Query 001022
Match_columns 1186
No_of_seqs 497 out of 2367
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 13:38:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0239 Kinesin (KAR3 subfamil 100.0 2.4E-82 5.2E-87 761.7 33.6 395 62-465 240-646 (670)
2 KOG0243 Kinesin-like protein [ 100.0 1E-79 2.2E-84 744.5 40.1 350 141-509 46-425 (1041)
3 KOG4280 Kinesin-like protein [ 100.0 8.9E-78 1.9E-82 703.4 24.0 347 143-506 4-367 (574)
4 KOG0245 Kinesin-like protein [ 100.0 1.2E-76 2.7E-81 705.3 25.5 345 144-508 4-381 (1221)
5 KOG0240 Kinesin (SMY1 subfamil 100.0 1.3E-74 2.8E-79 662.5 38.0 353 142-501 5-372 (607)
6 cd01370 KISc_KIP3_like Kinesin 100.0 2.1E-73 4.6E-78 642.2 29.7 313 145-459 1-338 (338)
7 PLN03188 kinesin-12 family pro 100.0 4.8E-73 1E-77 691.5 32.4 342 143-504 97-469 (1320)
8 cd01373 KISc_KLP2_like Kinesin 100.0 2.5E-72 5.5E-77 633.3 29.8 309 144-459 1-337 (337)
9 cd01368 KISc_KIF23_like Kinesi 100.0 1.5E-71 3.3E-76 628.9 29.9 307 144-457 1-345 (345)
10 KOG0242 Kinesin-like protein [ 100.0 5.5E-71 1.2E-75 665.4 28.6 350 144-505 6-369 (675)
11 cd01367 KISc_KIF2_like Kinesin 100.0 3.7E-70 7.9E-75 612.2 29.3 306 144-457 1-322 (322)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.2E-69 2.7E-74 615.2 32.1 319 144-463 1-353 (356)
13 KOG0241 Kinesin-like protein [ 100.0 3E-70 6.5E-75 638.4 27.2 349 143-507 3-383 (1714)
14 cd01371 KISc_KIF3 Kinesin moto 100.0 7.7E-69 1.7E-73 603.8 31.6 314 144-459 1-333 (333)
15 cd01366 KISc_C_terminal Kinesi 100.0 1.2E-68 2.7E-73 600.1 32.0 315 143-461 1-328 (329)
16 cd01376 KISc_KID_like Kinesin 100.0 9.3E-69 2E-73 599.9 30.8 305 145-457 1-319 (319)
17 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.1E-68 2.4E-73 599.9 31.0 309 144-459 2-325 (325)
18 cd01374 KISc_CENP_E Kinesin mo 100.0 1.8E-68 3.9E-73 597.6 30.2 306 145-459 1-321 (321)
19 cd01364 KISc_BimC_Eg5 Kinesin 100.0 3.8E-68 8.1E-73 601.8 30.9 316 144-463 2-347 (352)
20 cd01375 KISc_KIF9_like Kinesin 100.0 2.2E-67 4.7E-72 592.4 29.2 310 145-457 1-334 (334)
21 cd01372 KISc_KIF4 Kinesin moto 100.0 4.8E-67 1E-71 589.8 29.8 307 145-460 2-341 (341)
22 cd00106 KISc Kinesin motor dom 100.0 2.4E-65 5.2E-70 571.7 31.8 312 145-457 1-328 (328)
23 KOG0247 Kinesin-like protein [ 100.0 2.8E-65 6E-70 596.8 31.5 322 141-462 28-439 (809)
24 smart00129 KISc Kinesin motor, 100.0 6E-64 1.3E-68 562.8 30.7 316 145-464 1-333 (335)
25 PF00225 Kinesin: Kinesin moto 100.0 7E-64 1.5E-68 561.3 22.8 309 151-459 1-335 (335)
26 KOG0246 Kinesin-like protein [ 100.0 2.5E-60 5.5E-65 542.9 24.9 315 144-463 208-545 (676)
27 KOG0244 Kinesin-like protein [ 100.0 2.9E-58 6.3E-63 551.2 14.0 302 152-464 1-322 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 5E-55 1.1E-59 521.5 33.7 315 142-466 20-343 (568)
29 cd01363 Motor_domain Myosin an 100.0 1.1E-46 2.4E-51 392.1 15.9 172 203-438 8-186 (186)
30 KOG0239 Kinesin (KAR3 subfamil 100.0 5.6E-33 1.2E-37 335.6 -6.4 654 172-962 12-670 (670)
31 COG5059 KIP1 Kinesin-like prot 98.7 1.3E-10 2.9E-15 140.8 -11.2 263 128-403 290-566 (568)
32 PF09726 Macoilin: Transmembra 96.6 0.22 4.7E-06 63.2 22.3 35 634-668 628-665 (697)
33 PRK11637 AmiB activator; Provi 96.5 1.6 3.4E-05 52.4 28.3 9 816-824 378-386 (428)
34 PF09726 Macoilin: Transmembra 96.0 0.19 4.1E-06 63.7 17.9 119 539-661 458-578 (697)
35 PRK11637 AmiB activator; Provi 95.6 2.6 5.7E-05 50.5 24.2 7 694-700 305-311 (428)
36 COG1579 Zn-ribbon protein, pos 94.9 4.8 0.0001 45.2 21.6 93 539-661 94-186 (239)
37 KOG1853 LIS1-interacting prote 94.7 3.9 8.4E-05 46.0 20.0 37 625-661 144-183 (333)
38 TIGR02169 SMC_prok_A chromosom 94.7 4.7 0.0001 53.3 24.8 14 223-236 27-40 (1164)
39 COG4942 Membrane-bound metallo 94.6 15 0.00032 44.5 27.4 24 678-701 281-304 (420)
40 TIGR02169 SMC_prok_A chromosom 94.5 5.2 0.00011 52.9 24.7 30 631-660 465-494 (1164)
41 KOG0996 Structural maintenance 94.5 1.3 2.7E-05 58.2 17.9 33 642-674 570-602 (1293)
42 PF10168 Nup88: Nuclear pore c 94.4 3.2 6.9E-05 53.2 21.5 84 562-658 632-715 (717)
43 KOG0980 Actin-binding protein 94.4 4.1 9E-05 52.3 21.7 81 746-830 645-751 (980)
44 PF07888 CALCOCO1: Calcium bin 94.1 11 0.00025 46.8 24.3 41 478-518 154-194 (546)
45 PRK09039 hypothetical protein; 94.1 5 0.00011 47.2 20.8 44 549-592 117-160 (343)
46 PRK09039 hypothetical protein; 94.0 4.7 0.0001 47.4 20.2 41 552-592 113-153 (343)
47 PF13851 GAS: Growth-arrest sp 94.0 7.3 0.00016 42.6 20.3 22 625-646 179-200 (201)
48 TIGR02168 SMC_prok_B chromosom 93.9 8.3 0.00018 50.9 24.6 7 731-737 980-986 (1179)
49 PF00308 Bac_DnaA: Bacterial d 93.7 0.036 7.8E-07 60.4 2.3 50 186-237 3-52 (219)
50 TIGR02168 SMC_prok_B chromosom 93.7 5.2 0.00011 52.7 22.3 8 859-866 1072-1079(1179)
51 KOG2129 Uncharacterized conser 93.6 4.2 9.2E-05 48.4 18.5 61 575-645 252-313 (552)
52 PF07888 CALCOCO1: Calcium bin 93.3 12 0.00025 46.7 22.4 30 489-518 284-313 (546)
53 KOG0250 DNA repair protein RAD 93.3 4.7 0.0001 53.0 19.9 55 538-592 362-417 (1074)
54 PF05667 DUF812: Protein of un 93.2 7.4 0.00016 49.0 21.2 36 626-661 489-524 (594)
55 COG0556 UvrB Helicase subunit 93.2 0.1 2.3E-06 63.3 5.0 88 186-282 3-101 (663)
56 COG4372 Uncharacterized protei 92.9 18 0.0004 43.0 22.0 14 391-404 8-21 (499)
57 PF12718 Tropomyosin_1: Tropom 92.7 12 0.00027 38.9 18.7 56 539-594 85-140 (143)
58 KOG1029 Endocytic adaptor prot 92.6 9.7 0.00021 48.5 20.3 19 930-948 820-838 (1118)
59 PF08317 Spc7: Spc7 kinetochor 92.6 8 0.00017 45.1 19.1 47 546-592 221-267 (325)
60 PF09755 DUF2046: Uncharacteri 92.4 26 0.00056 41.0 22.3 42 551-592 109-151 (310)
61 PHA02562 46 endonuclease subun 92.4 12 0.00026 46.0 21.2 16 221-236 29-44 (562)
62 COG5185 HEC1 Protein involved 92.3 3 6.5E-05 50.2 15.1 155 485-661 268-422 (622)
63 PRK04863 mukB cell division pr 92.3 18 0.0004 50.1 24.4 17 221-237 29-45 (1486)
64 PF10481 CENP-F_N: Cenp-F N-te 92.2 24 0.00053 40.4 21.1 123 569-701 102-229 (307)
65 COG1579 Zn-ribbon protein, pos 92.2 24 0.00053 39.9 22.2 35 626-660 140-174 (239)
66 PRK03918 chromosome segregatio 91.9 29 0.00063 45.1 25.0 83 565-659 401-483 (880)
67 KOG0161 Myosin class II heavy 91.9 9.7 0.00021 53.5 21.2 17 1121-1137 1622-1638(1930)
68 COG1196 Smc Chromosome segrega 91.7 21 0.00046 48.4 24.1 22 212-236 20-41 (1163)
69 KOG0976 Rho/Rac1-interacting s 91.5 14 0.0003 47.3 20.0 34 634-667 244-277 (1265)
70 KOG4643 Uncharacterized coiled 91.4 12 0.00027 48.9 19.9 49 1070-1122 881-929 (1195)
71 KOG0995 Centromere-associated 91.3 4.2 9.1E-05 50.3 15.2 102 553-661 285-386 (581)
72 KOG1029 Endocytic adaptor prot 91.2 18 0.00038 46.4 20.4 31 625-655 473-503 (1118)
73 PRK02224 chromosome segregatio 91.2 17 0.00036 47.5 21.7 30 632-661 603-632 (880)
74 KOG0250 DNA repair protein RAD 91.1 27 0.00059 46.4 22.8 20 217-237 61-80 (1074)
75 KOG0977 Nuclear envelope prote 91.0 20 0.00044 44.7 20.8 115 475-589 100-217 (546)
76 PF00261 Tropomyosin: Tropomyo 90.9 14 0.00031 41.1 18.0 20 573-592 138-157 (237)
77 PF12325 TMF_TATA_bd: TATA ele 90.8 11 0.00024 38.4 15.3 97 475-593 17-113 (120)
78 COG1196 Smc Chromosome segrega 90.8 33 0.00072 46.6 24.4 21 769-789 985-1005(1163)
79 KOG1937 Uncharacterized conser 90.6 14 0.0003 44.7 18.2 34 628-661 345-378 (521)
80 KOG0971 Microtubule-associated 90.4 30 0.00064 45.2 21.5 15 726-744 599-613 (1243)
81 smart00787 Spc7 Spc7 kinetocho 90.4 17 0.00038 42.4 18.7 49 544-592 214-262 (312)
82 PRK02224 chromosome segregatio 90.4 27 0.00058 45.6 22.6 9 58-66 151-159 (880)
83 KOG0161 Myosin class II heavy 90.2 19 0.00041 50.9 21.3 22 308-329 684-705 (1930)
84 PF05667 DUF812: Protein of un 90.0 18 0.00039 45.7 19.6 37 625-661 495-531 (594)
85 PF14662 CCDC155: Coiled-coil 90.0 34 0.00073 37.5 20.5 31 628-658 144-177 (193)
86 PRK12377 putative replication 89.9 0.2 4.4E-06 56.0 2.7 50 188-238 71-120 (248)
87 PF11559 ADIP: Afadin- and alp 89.7 14 0.00031 38.1 15.7 45 538-585 105-149 (151)
88 KOG0996 Structural maintenance 89.7 17 0.00036 48.5 19.2 13 224-236 113-125 (1293)
89 PRK06620 hypothetical protein; 89.6 0.2 4.4E-06 54.6 2.3 50 185-237 10-62 (214)
90 PRK12704 phosphodiesterase; Pr 89.5 52 0.0011 41.1 22.9 32 761-794 278-309 (520)
91 PRK06893 DNA replication initi 89.4 0.26 5.6E-06 54.0 2.9 47 186-237 11-57 (229)
92 PRK14086 dnaA chromosomal repl 89.3 0.27 5.8E-06 61.4 3.3 51 185-237 282-332 (617)
93 PRK08084 DNA replication initi 89.3 0.25 5.4E-06 54.4 2.7 47 186-237 17-63 (235)
94 PF00038 Filament: Intermediat 89.2 37 0.00079 38.8 20.1 33 59-91 7-39 (312)
95 KOG0963 Transcription factor/C 89.2 31 0.00067 43.4 20.2 32 887-918 569-600 (629)
96 PF10174 Cast: RIM-binding pro 89.1 25 0.00055 45.7 20.2 119 476-594 289-410 (775)
97 KOG0946 ER-Golgi vesicle-tethe 89.0 11 0.00023 48.4 16.4 26 569-594 737-762 (970)
98 PF04849 HAP1_N: HAP1 N-termin 89.0 41 0.00088 39.4 19.9 20 484-503 170-189 (306)
99 COG3883 Uncharacterized protei 89.0 49 0.0011 38.0 25.1 13 577-589 177-189 (265)
100 PRK07952 DNA replication prote 88.9 0.33 7.2E-06 54.2 3.4 51 187-238 68-118 (244)
101 PF12128 DUF3584: Protein of u 88.9 27 0.00058 47.6 21.5 22 577-598 772-793 (1201)
102 KOG0976 Rho/Rac1-interacting s 88.8 17 0.00036 46.7 17.5 11 928-938 688-698 (1265)
103 KOG0963 Transcription factor/C 88.6 19 0.00042 45.2 17.9 34 477-510 238-271 (629)
104 COG2805 PilT Tfp pilus assembl 88.5 0.22 4.8E-06 57.3 1.7 30 208-237 114-143 (353)
105 KOG4809 Rab6 GTPase-interactin 88.5 33 0.00072 42.5 19.4 126 481-610 331-462 (654)
106 KOG0964 Structural maintenance 88.5 28 0.00061 45.7 19.6 19 313-331 117-135 (1200)
107 TIGR00606 rad50 rad50. This fa 88.3 32 0.0007 47.3 21.8 28 769-796 1135-1162(1311)
108 KOG4643 Uncharacterized coiled 88.2 47 0.001 44.0 21.3 28 954-981 897-933 (1195)
109 PRK03918 chromosome segregatio 88.1 75 0.0016 41.5 24.1 14 223-236 27-40 (880)
110 KOG0971 Microtubule-associated 88.0 41 0.00089 44.0 20.4 78 570-654 519-603 (1243)
111 TIGR01242 26Sp45 26S proteasom 88.0 1.1 2.5E-05 52.2 7.1 17 220-236 157-173 (364)
112 PRK04863 mukB cell division pr 87.9 27 0.00059 48.5 20.6 33 629-661 1075-1107(1486)
113 PRK14088 dnaA chromosomal repl 87.9 0.33 7.3E-06 58.4 2.8 50 185-237 99-148 (440)
114 KOG0612 Rho-associated, coiled 87.9 29 0.00063 46.6 19.6 32 628-661 667-698 (1317)
115 PRK05642 DNA replication initi 87.8 0.38 8.3E-06 53.0 2.9 50 186-237 14-63 (234)
116 PF13851 GAS: Growth-arrest sp 87.8 48 0.001 36.4 22.2 16 489-504 28-43 (201)
117 KOG0933 Structural maintenance 87.7 49 0.0011 43.9 21.0 20 199-218 368-387 (1174)
118 COG5185 HEC1 Protein involved 87.6 39 0.00084 41.3 19.0 61 567-654 485-545 (622)
119 TIGR00362 DnaA chromosomal rep 87.6 0.38 8.1E-06 56.9 2.9 51 185-237 104-154 (405)
120 PF15070 GOLGA2L5: Putative go 87.6 47 0.001 42.3 21.0 45 545-589 164-208 (617)
121 KOG0728 26S proteasome regulat 87.5 3.7 8.1E-05 46.5 10.2 18 218-235 180-197 (404)
122 PRK08116 hypothetical protein; 87.4 0.26 5.6E-06 55.6 1.4 51 186-237 80-132 (268)
123 KOG4360 Uncharacterized coiled 87.1 29 0.00062 42.8 17.7 90 541-661 212-301 (596)
124 TIGR03420 DnaA_homol_Hda DnaA 87.1 0.45 9.7E-06 50.9 2.9 47 186-237 10-56 (226)
125 PF12718 Tropomyosin_1: Tropom 87.1 42 0.0009 35.0 18.3 55 538-592 77-131 (143)
126 TIGR03319 YmdA_YtgF conserved 87.0 71 0.0015 39.9 21.8 87 675-794 214-303 (514)
127 PF08317 Spc7: Spc7 kinetochor 86.8 29 0.00063 40.5 17.5 52 543-594 211-262 (325)
128 PRK00149 dnaA chromosomal repl 86.7 0.44 9.5E-06 57.3 2.9 51 185-237 116-166 (450)
129 COG2804 PulE Type II secretory 86.5 0.36 7.8E-06 58.7 2.0 31 208-238 247-277 (500)
130 PRK00106 hypothetical protein; 86.4 52 0.0011 41.3 20.1 88 675-795 235-325 (535)
131 PF10168 Nup88: Nuclear pore c 86.4 27 0.00059 45.1 18.3 11 145-155 126-136 (717)
132 KOG4674 Uncharacterized conser 86.3 54 0.0012 46.1 21.6 33 629-661 1315-1347(1822)
133 PRK03992 proteasome-activating 86.1 1.6 3.5E-05 51.8 7.0 18 219-236 165-182 (389)
134 PRK10929 putative mechanosensi 86.0 62 0.0014 43.9 21.8 44 925-968 598-647 (1109)
135 KOG4360 Uncharacterized coiled 85.8 54 0.0012 40.6 19.1 110 479-592 164-277 (596)
136 PRK10884 SH3 domain-containing 85.8 9.9 0.00021 41.9 12.3 26 565-590 142-167 (206)
137 PF09789 DUF2353: Uncharacteri 85.7 74 0.0016 37.5 19.7 155 483-661 74-229 (319)
138 PF04156 IncA: IncA protein; 85.7 50 0.0011 35.2 17.4 18 487-504 87-104 (191)
139 PRK08903 DnaA regulatory inact 85.6 0.63 1.4E-05 50.3 3.1 48 186-237 13-60 (227)
140 PRK09087 hypothetical protein; 85.5 0.53 1.1E-05 51.8 2.5 47 186-237 16-62 (226)
141 smart00787 Spc7 Spc7 kinetocho 85.5 40 0.00088 39.4 17.7 54 544-597 207-260 (312)
142 PF15254 CCDC14: Coiled-coil d 85.2 1E+02 0.0022 40.0 21.7 29 633-661 527-555 (861)
143 PTZ00454 26S protease regulato 85.2 1.7 3.7E-05 52.0 6.7 51 186-236 140-196 (398)
144 KOG0804 Cytoplasmic Zn-finger 85.2 25 0.00055 42.7 15.9 55 535-589 390-448 (493)
145 COG3883 Uncharacterized protei 85.1 77 0.0017 36.5 19.1 9 495-503 80-88 (265)
146 PF10186 Atg14: UV radiation r 85.0 71 0.0015 35.8 20.1 25 482-506 21-45 (302)
147 PF12128 DUF3584: Protein of u 84.9 92 0.002 42.7 23.1 14 1125-1138 1072-1085(1201)
148 COG0593 DnaA ATPase involved i 84.9 0.56 1.2E-05 56.1 2.5 51 185-237 81-131 (408)
149 PRK06835 DNA replication prote 84.8 0.33 7.1E-06 56.5 0.5 37 201-238 166-202 (329)
150 PF14915 CCDC144C: CCDC144C pr 84.8 41 0.00088 39.2 16.7 31 631-661 147-177 (305)
151 PRK14087 dnaA chromosomal repl 84.7 0.58 1.3E-05 56.6 2.5 49 187-237 111-159 (450)
152 KOG0727 26S proteasome regulat 84.7 4.3 9.3E-05 46.1 8.9 72 188-259 152-246 (408)
153 PF04849 HAP1_N: HAP1 N-termin 84.6 90 0.0019 36.7 20.3 30 483-512 162-191 (306)
154 PF15619 Lebercilin: Ciliary p 84.6 62 0.0013 35.5 17.6 22 573-594 168-189 (194)
155 KOG1853 LIS1-interacting prote 84.4 39 0.00084 38.4 15.9 7 719-725 239-245 (333)
156 KOG4807 F-actin binding protei 84.1 62 0.0014 38.8 18.1 32 630-661 507-538 (593)
157 KOG0982 Centrosomal protein Nu 83.7 27 0.00059 42.2 15.2 44 550-593 341-384 (502)
158 PF15070 GOLGA2L5: Putative go 83.5 90 0.002 39.9 20.7 11 1130-1140 576-586 (617)
159 KOG1899 LAR transmembrane tyro 83.3 14 0.00031 46.1 13.0 13 869-881 489-501 (861)
160 PF10146 zf-C4H2: Zinc finger- 83.1 41 0.0009 37.8 15.8 59 533-591 45-103 (230)
161 PF00261 Tropomyosin: Tropomyo 83.1 84 0.0018 35.1 22.7 28 631-658 200-227 (237)
162 PF05483 SCP-1: Synaptonemal c 82.7 1.6E+02 0.0034 38.0 21.9 26 122-147 168-193 (786)
163 PF09738 DUF2051: Double stran 82.7 1E+02 0.0022 36.1 19.2 55 539-593 110-164 (302)
164 PF10146 zf-C4H2: Zinc finger- 82.6 31 0.00068 38.7 14.6 33 629-661 68-100 (230)
165 KOG2129 Uncharacterized conser 82.5 21 0.00046 42.8 13.6 18 782-799 300-317 (552)
166 PF11559 ADIP: Afadin- and alp 82.5 64 0.0014 33.4 17.5 50 541-590 73-122 (151)
167 KOG0999 Microtubule-associated 82.2 1E+02 0.0022 38.7 19.2 35 911-954 492-533 (772)
168 PF07926 TPR_MLP1_2: TPR/MLP1/ 82.0 63 0.0014 33.0 19.9 33 628-660 98-130 (132)
169 TIGR00606 rad50 rad50. This fa 82.0 1E+02 0.0022 42.7 21.9 30 485-514 885-914 (1311)
170 PF15619 Lebercilin: Ciliary p 82.0 86 0.0019 34.4 24.0 23 641-663 170-192 (194)
171 KOG4674 Uncharacterized conser 81.8 1.1E+02 0.0024 43.4 21.5 44 618-661 381-424 (1822)
172 KOG0018 Structural maintenance 81.7 60 0.0013 43.3 18.3 36 626-661 400-435 (1141)
173 KOG0804 Cytoplasmic Zn-finger 81.7 63 0.0014 39.5 17.2 25 569-593 421-445 (493)
174 COG1340 Uncharacterized archae 81.5 1.2E+02 0.0025 35.6 19.3 28 533-560 61-88 (294)
175 TIGR02928 orc1/cdc6 family rep 81.5 0.98 2.1E-05 52.1 2.6 38 199-236 19-57 (365)
176 COG1484 DnaC DNA replication p 81.4 1 2.2E-05 50.7 2.6 50 187-238 75-124 (254)
177 KOG0980 Actin-binding protein 81.2 1.3E+02 0.0027 39.8 20.4 114 479-592 356-475 (980)
178 KOG0995 Centromere-associated 81.1 1.6E+02 0.0036 37.1 23.3 46 547-592 345-390 (581)
179 PF04851 ResIII: Type III rest 80.8 0.91 2E-05 46.0 1.9 36 200-238 8-44 (184)
180 PF04111 APG6: Autophagy prote 80.8 26 0.00057 40.9 13.8 28 484-511 46-73 (314)
181 COG4942 Membrane-bound metallo 80.6 1.5E+02 0.0032 36.3 23.8 8 816-823 370-377 (420)
182 PRK08939 primosomal protein Dn 80.5 0.86 1.9E-05 52.6 1.7 52 187-238 123-175 (306)
183 KOG0933 Structural maintenance 80.5 1E+02 0.0023 41.0 19.6 19 385-403 686-704 (1174)
184 PRK08727 hypothetical protein; 80.2 1.1 2.3E-05 49.4 2.3 45 186-237 14-59 (233)
185 COG1340 Uncharacterized archae 80.2 1.3E+02 0.0028 35.3 18.6 33 487-519 157-189 (294)
186 KOG4673 Transcription factor T 79.9 1.6E+02 0.0034 38.0 20.1 57 1013-1086 901-958 (961)
187 PRK00411 cdc6 cell division co 79.9 1.5 3.3E-05 51.1 3.5 37 200-236 35-72 (394)
188 PF00038 Filament: Intermediat 79.8 1.2E+02 0.0026 34.7 24.4 25 630-654 264-288 (312)
189 COG4372 Uncharacterized protei 79.7 1.5E+02 0.0033 35.8 23.1 27 428-454 40-66 (499)
190 TIGR01843 type_I_hlyD type I s 79.5 1.4E+02 0.0029 35.2 21.2 36 632-669 243-278 (423)
191 PRK08181 transposase; Validate 78.9 1 2.2E-05 51.1 1.7 21 216-238 105-125 (269)
192 TIGR02680 conserved hypothetic 78.3 2.4E+02 0.0051 39.5 23.5 34 396-429 183-219 (1353)
193 COG4026 Uncharacterized protei 78.3 16 0.00036 40.6 10.3 44 736-779 226-271 (290)
194 KOG0994 Extracellular matrix g 78.2 2.4E+02 0.0052 38.5 21.6 28 634-661 1723-1750(1758)
195 PF14662 CCDC155: Coiled-coil 78.0 1.2E+02 0.0025 33.6 24.2 24 482-505 30-53 (193)
196 PF10174 Cast: RIM-binding pro 77.9 1.3E+02 0.0028 39.6 19.7 26 639-664 511-536 (775)
197 PF04156 IncA: IncA protein; 77.8 97 0.0021 33.0 16.0 13 488-500 95-107 (191)
198 KOG0946 ER-Golgi vesicle-tethe 77.5 48 0.001 43.0 15.2 47 546-592 669-715 (970)
199 PF10498 IFT57: Intra-flagella 77.5 1.2E+02 0.0025 36.5 17.9 24 231-257 57-80 (359)
200 PRK06526 transposase; Provisio 77.5 1.2 2.5E-05 50.1 1.6 21 216-238 97-117 (254)
201 KOG4673 Transcription factor T 77.3 2.3E+02 0.005 36.6 25.5 65 491-555 608-676 (961)
202 PF08614 ATG16: Autophagy prot 77.0 41 0.0009 36.4 13.1 47 546-592 114-160 (194)
203 KOG0977 Nuclear envelope prote 76.8 1E+02 0.0022 38.9 17.6 25 792-816 368-392 (546)
204 PRK04406 hypothetical protein; 76.8 23 0.00051 33.2 9.6 32 631-662 28-59 (75)
205 PLN02939 transferase, transfer 76.6 1.1E+02 0.0024 41.0 18.7 90 553-661 298-395 (977)
206 PF00769 ERM: Ezrin/radixin/mo 76.6 40 0.00087 38.1 13.2 33 628-660 89-121 (246)
207 PRK12422 chromosomal replicati 76.2 1.9 4E-05 52.3 2.9 52 184-237 104-159 (445)
208 PF00769 ERM: Ezrin/radixin/mo 76.1 1.1E+02 0.0023 34.7 16.4 110 485-594 9-121 (246)
209 PF06785 UPF0242: Uncharacteri 76.1 1.2E+02 0.0027 35.8 16.8 26 636-661 195-220 (401)
210 KOG0978 E3 ubiquitin ligase in 76.0 1.9E+02 0.0042 37.5 20.0 37 625-661 584-620 (698)
211 PF10226 DUF2216: Uncharacteri 75.8 1.3E+02 0.0029 33.1 16.7 46 477-522 44-89 (195)
212 cd00046 DEXDc DEAD-like helica 75.7 1.2 2.6E-05 41.9 0.9 17 222-238 3-19 (144)
213 PRK12704 phosphodiesterase; Pr 75.7 2E+02 0.0043 36.2 19.9 37 674-711 219-255 (520)
214 KOG0994 Extracellular matrix g 75.7 2E+02 0.0043 39.2 19.9 33 629-661 1711-1743(1758)
215 cd00009 AAA The AAA+ (ATPases 75.5 1.8 3.8E-05 41.3 2.0 19 218-236 18-36 (151)
216 PRK01156 chromosome segregatio 75.4 2.8E+02 0.0061 36.7 24.0 16 221-236 25-40 (895)
217 COG1474 CDC6 Cdc6-related prot 75.2 1.7 3.7E-05 51.4 2.2 30 207-236 29-59 (366)
218 PF13191 AAA_16: AAA ATPase do 75.2 1.5 3.3E-05 44.8 1.6 34 203-236 8-41 (185)
219 PRK06921 hypothetical protein; 74.9 1.8 3.8E-05 49.0 2.1 52 187-238 80-136 (266)
220 PRK12402 replication factor C 74.3 1.7 3.8E-05 49.2 1.9 42 189-237 13-54 (337)
221 PRK11281 hypothetical protein; 73.9 1.5E+02 0.0033 40.4 19.5 82 566-655 231-312 (1113)
222 PLN03188 kinesin-12 family pro 73.9 66 0.0014 43.8 15.8 16 359-374 844-859 (1320)
223 PF04012 PspA_IM30: PspA/IM30 73.9 1.4E+02 0.0031 32.6 19.4 45 547-591 97-141 (221)
224 PTZ00112 origin recognition co 73.8 1.5 3.2E-05 57.0 1.3 31 206-236 766-798 (1164)
225 KOG4603 TBP-1 interacting prot 73.8 20 0.00044 38.5 9.2 35 57-91 80-114 (201)
226 TIGR02538 type_IV_pilB type IV 73.7 1.4 2.9E-05 55.0 0.9 28 210-237 307-334 (564)
227 KOG2991 Splicing regulator [RN 73.6 1.3E+02 0.0027 34.7 15.6 57 537-593 239-295 (330)
228 PF09787 Golgin_A5: Golgin sub 73.5 1.8E+02 0.0039 36.3 18.9 30 625-654 389-418 (511)
229 PRK10436 hypothetical protein; 73.5 1.4 3.1E-05 53.6 1.0 28 210-237 209-236 (462)
230 PRK10884 SH3 domain-containing 72.9 53 0.0011 36.4 12.7 21 488-508 93-113 (206)
231 PF13401 AAA_22: AAA domain; P 72.9 1.4 2.9E-05 42.9 0.5 18 219-236 4-21 (131)
232 COG2433 Uncharacterized conser 72.8 66 0.0014 40.7 14.5 24 566-589 485-508 (652)
233 PRK09841 cryptic autophosphory 72.7 3E+02 0.0065 35.8 21.5 24 426-449 225-248 (726)
234 KOG0982 Centrosomal protein Nu 72.5 2.4E+02 0.0052 34.6 20.7 33 629-661 361-393 (502)
235 smart00053 DYNc Dynamin, GTPas 72.5 13 0.00027 41.9 8.0 54 310-372 85-138 (240)
236 PF01935 DUF87: Domain of unkn 72.4 1.5 3.3E-05 47.4 0.8 15 222-236 26-40 (229)
237 TIGR02533 type_II_gspE general 72.3 1.7 3.8E-05 53.2 1.4 28 210-237 233-260 (486)
238 KOG0244 Kinesin-like protein [ 72.2 1.1E+02 0.0023 40.5 16.7 36 766-801 693-728 (913)
239 KOG0240 Kinesin (SMY1 subfamil 72.2 2.8E+02 0.0061 35.2 19.6 10 250-259 181-190 (607)
240 PF00270 DEAD: DEAD/DEAH box h 72.0 2.2 4.7E-05 43.1 1.8 26 210-237 7-32 (169)
241 PF06637 PV-1: PV-1 protein (P 72.0 2.2E+02 0.0047 34.5 17.7 49 471-519 282-330 (442)
242 PF15066 CAGE1: Cancer-associa 71.8 2.6E+02 0.0056 34.7 22.5 17 443-459 315-331 (527)
243 PF15294 Leu_zip: Leucine zipp 71.4 1.1E+02 0.0024 35.4 15.1 36 485-520 129-164 (278)
244 KOG0018 Structural maintenance 71.3 1.2E+02 0.0026 40.7 16.8 43 423-465 91-133 (1141)
245 PF12846 AAA_10: AAA-like doma 71.0 1.7 3.6E-05 47.7 0.8 19 219-237 1-19 (304)
246 smart00382 AAA ATPases associa 70.9 1.8 4E-05 40.5 0.9 18 220-237 3-20 (148)
247 PRK00846 hypothetical protein; 70.9 53 0.0011 31.3 10.3 46 632-677 31-76 (77)
248 KOG4593 Mitotic checkpoint pro 70.8 3.3E+02 0.007 35.4 20.8 25 1120-1144 621-645 (716)
249 PRK09343 prefoldin subunit bet 70.7 34 0.00073 34.7 9.8 40 625-664 68-107 (121)
250 COG2433 Uncharacterized conser 70.7 71 0.0015 40.4 14.2 32 483-514 431-462 (652)
251 cd01131 PilT Pilus retraction 70.4 1.9 4E-05 46.3 0.9 19 219-237 1-19 (198)
252 KOG0612 Rho-associated, coiled 70.3 2.3E+02 0.005 38.8 19.2 42 976-1017 904-950 (1317)
253 KOG0964 Structural maintenance 70.3 3.9E+02 0.0084 36.1 22.0 12 225-236 31-42 (1200)
254 KOG0979 Structural maintenance 70.0 1.2E+02 0.0027 40.4 16.5 35 996-1030 637-671 (1072)
255 TIGR01420 pilT_fam pilus retra 69.8 2.2 4.8E-05 49.8 1.4 28 210-237 113-140 (343)
256 PRK10865 protein disaggregatio 69.8 9.6 0.00021 50.0 7.3 45 188-236 565-615 (857)
257 PF08614 ATG16: Autophagy prot 69.8 34 0.00074 37.0 10.3 17 487-503 73-89 (194)
258 PF13245 AAA_19: Part of AAA d 69.7 2.1 4.5E-05 39.6 1.0 26 211-237 3-28 (76)
259 COG5008 PilU Tfp pilus assembl 69.6 3 6.5E-05 47.7 2.3 34 204-237 110-145 (375)
260 PF09730 BicD: Microtubule-ass 69.6 3.6E+02 0.0077 35.4 21.7 100 992-1108 549-681 (717)
261 PF07111 HCR: Alpha helical co 69.6 3.2E+02 0.007 35.5 19.5 194 483-689 473-700 (739)
262 PF13863 DUF4200: Domain of un 69.4 1.3E+02 0.0027 30.0 16.1 21 485-505 11-31 (126)
263 PRK02119 hypothetical protein; 69.2 51 0.0011 30.8 9.9 33 632-664 27-59 (73)
264 TIGR02680 conserved hypothetic 69.1 4.8E+02 0.01 36.7 23.3 16 222-237 27-42 (1353)
265 KOG0999 Microtubule-associated 68.8 3.2E+02 0.007 34.6 26.8 103 487-592 597-699 (772)
266 PRK00106 hypothetical protein; 68.6 3.3E+02 0.0071 34.6 21.3 33 957-991 355-388 (535)
267 PF02841 GBP_C: Guanylate-bind 68.4 1.7E+02 0.0037 33.7 16.1 16 573-588 281-296 (297)
268 PF06785 UPF0242: Uncharacteri 68.3 2.6E+02 0.0057 33.3 22.1 117 480-600 91-225 (401)
269 PF15254 CCDC14: Coiled-coil d 68.3 3.8E+02 0.0083 35.2 20.1 37 557-593 517-553 (861)
270 KOG0978 E3 ubiquitin ligase in 67.9 2.7E+02 0.0058 36.3 18.7 47 547-593 572-618 (698)
271 PF01637 Arch_ATPase: Archaeal 67.2 2 4.4E-05 45.1 0.4 30 207-236 8-37 (234)
272 TIGR02525 plasmid_TraJ plasmid 67.2 2.8 6E-05 49.9 1.5 20 218-237 148-167 (372)
273 PF05266 DUF724: Protein of un 66.7 2.1E+02 0.0045 31.5 16.6 54 540-593 130-183 (190)
274 PF05266 DUF724: Protein of un 66.6 1.8E+02 0.0039 31.9 14.9 24 569-592 124-147 (190)
275 PF01920 Prefoldin_2: Prefoldi 66.4 79 0.0017 30.2 11.1 36 625-660 59-94 (106)
276 TIGR02524 dot_icm_DotB Dot/Icm 66.0 3 6.5E-05 49.3 1.5 21 217-237 132-152 (358)
277 TIGR03015 pepcterm_ATPase puta 65.8 3.8 8.2E-05 45.0 2.2 22 215-236 39-60 (269)
278 PF00437 T2SE: Type II/IV secr 65.7 5.6 0.00012 44.3 3.5 30 207-237 116-145 (270)
279 PRK12705 hypothetical protein; 65.7 3.6E+02 0.0078 34.0 21.7 17 675-691 208-224 (508)
280 PF07106 TBPIP: Tat binding pr 65.5 84 0.0018 33.2 12.0 58 58-115 74-136 (169)
281 TIGR03007 pepcterm_ChnLen poly 65.1 3.3E+02 0.0072 33.3 22.0 21 576-596 275-295 (498)
282 PHA01754 hypothetical protein 65.0 11 0.00023 34.2 4.3 49 986-1043 12-60 (69)
283 KOG0288 WD40 repeat protein Ti 64.8 2.4E+02 0.0052 34.5 16.3 18 733-750 225-242 (459)
284 PRK04778 septation ring format 64.6 3.8E+02 0.0083 33.9 21.1 20 484-503 320-339 (569)
285 PF10267 Tmemb_cc2: Predicted 64.5 2.1E+02 0.0046 34.8 16.2 43 547-589 275-318 (395)
286 PF15066 CAGE1: Cancer-associa 64.5 2.1E+02 0.0045 35.5 15.9 19 435-453 294-312 (527)
287 cd01129 PulE-GspE PulE/GspE Th 64.3 3.5 7.5E-05 46.6 1.5 28 210-237 71-98 (264)
288 PRK00409 recombination and DNA 64.1 2E+02 0.0042 38.0 17.1 38 916-953 737-775 (782)
289 TIGR03185 DNA_S_dndD DNA sulfu 64.0 4.1E+02 0.0089 34.1 20.1 16 221-236 30-45 (650)
290 PF07798 DUF1640: Protein of u 63.9 2.1E+02 0.0046 30.7 18.6 12 447-458 2-13 (177)
291 PF06309 Torsin: Torsin; Inte 63.7 3.9 8.5E-05 41.9 1.6 55 192-256 26-80 (127)
292 TIGR01843 type_I_hlyD type I s 63.5 3E+02 0.0066 32.3 19.1 29 483-511 146-174 (423)
293 KOG4809 Rab6 GTPase-interactin 63.3 1.4E+02 0.0029 37.6 14.3 81 564-661 326-406 (654)
294 PLN03137 ATP-dependent DNA hel 63.2 30 0.00064 46.8 9.7 27 208-236 466-492 (1195)
295 PF09728 Taxilin: Myosin-like 63.1 3.1E+02 0.0066 32.3 21.7 29 484-512 124-152 (309)
296 PF05622 HOOK: HOOK protein; 62.9 2.4 5.3E-05 54.1 0.0 24 631-654 387-410 (713)
297 PRK02793 phi X174 lysis protei 62.8 77 0.0017 29.5 9.7 33 632-664 26-58 (72)
298 PRK11281 hypothetical protein; 62.8 3.9E+02 0.0085 36.8 19.8 21 573-593 160-180 (1113)
299 PF13207 AAA_17: AAA domain; P 62.6 3.5 7.5E-05 39.7 1.0 16 221-236 1-16 (121)
300 PF01695 IstB_IS21: IstB-like 62.6 4.6 9.9E-05 43.0 2.0 19 220-238 48-66 (178)
301 PF13479 AAA_24: AAA domain 62.5 3.8 8.2E-05 44.5 1.4 20 219-238 3-22 (213)
302 TIGR00635 ruvB Holliday juncti 62.4 3.4 7.3E-05 46.6 1.0 41 197-237 6-48 (305)
303 PF10267 Tmemb_cc2: Predicted 62.3 2.7E+02 0.0057 34.0 16.5 24 632-655 295-318 (395)
304 PF05483 SCP-1: Synaptonemal c 62.3 4.4E+02 0.0096 34.3 18.6 24 629-652 740-763 (786)
305 PRK13894 conjugal transfer ATP 62.0 4.1 9E-05 47.4 1.7 28 208-236 138-165 (319)
306 KOG4302 Microtubule-associated 62.0 1.6E+02 0.0034 38.1 15.2 41 825-883 390-430 (660)
307 TIGR01005 eps_transp_fam exopo 61.9 4.7E+02 0.01 34.0 23.1 33 751-794 429-461 (754)
308 PF04111 APG6: Autophagy prote 61.8 1.4E+02 0.003 35.1 13.8 14 849-862 267-280 (314)
309 PRK13729 conjugal transfer pil 61.7 1.1E+02 0.0024 38.0 13.3 18 1067-1084 442-459 (475)
310 PF14915 CCDC144C: CCDC144C pr 61.5 3.2E+02 0.007 32.2 16.2 36 626-661 212-247 (305)
311 PRK10929 putative mechanosensi 61.5 6E+02 0.013 35.1 24.0 35 627-661 375-409 (1109)
312 PF00448 SRP54: SRP54-type pro 61.2 3.5 7.6E-05 44.6 0.9 17 221-237 3-19 (196)
313 PTZ00361 26 proteosome regulat 61.0 28 0.0006 42.5 8.4 16 221-236 219-234 (438)
314 PF10498 IFT57: Intra-flagella 60.2 2E+02 0.0043 34.6 15.0 48 546-593 271-318 (359)
315 TIGR00634 recN DNA repair prot 60.2 4.2E+02 0.0092 33.4 18.6 14 223-236 26-39 (563)
316 KOG0288 WD40 repeat protein Ti 60.1 3.7E+02 0.0079 33.0 16.7 34 719-752 225-263 (459)
317 PF13604 AAA_30: AAA domain; P 59.9 3.9 8.3E-05 44.0 0.9 28 210-237 9-36 (196)
318 KOG0992 Uncharacterized conser 59.8 3.1E+02 0.0066 34.4 16.2 200 476-687 233-445 (613)
319 TIGR03752 conj_TIGR03752 integ 59.8 80 0.0017 39.0 11.7 22 571-592 118-139 (472)
320 PF06705 SF-assemblin: SF-asse 59.5 3E+02 0.0064 31.0 21.0 31 626-656 159-189 (247)
321 PF08826 DMPK_coil: DMPK coile 59.5 1.1E+02 0.0023 28.1 9.6 39 551-589 21-59 (61)
322 smart00806 AIP3 Actin interact 59.4 4.2E+02 0.0091 32.7 17.5 156 488-656 155-317 (426)
323 COG1842 PspA Phage shock prote 59.3 3.1E+02 0.0066 31.0 20.2 48 546-593 97-144 (225)
324 PF15272 BBP1_C: Spindle pole 59.1 2.9E+02 0.0063 30.7 18.8 77 517-596 76-152 (196)
325 PF09304 Cortex-I_coil: Cortex 59.0 2.1E+02 0.0045 29.0 14.8 40 553-592 35-74 (107)
326 PF13086 AAA_11: AAA domain; P 58.6 5.6 0.00012 41.8 1.8 26 211-237 10-35 (236)
327 KOG2751 Beclin-like protein [S 58.5 4.4E+02 0.0095 32.6 18.3 27 476-502 145-171 (447)
328 TIGR02977 phageshock_pspA phag 58.4 2.9E+02 0.0064 30.5 15.8 106 486-591 29-135 (219)
329 KOG0979 Structural maintenance 58.3 4.1E+02 0.009 35.9 18.0 27 223-249 46-76 (1072)
330 PF03915 AIP3: Actin interacti 58.2 1.9E+02 0.0041 35.6 14.5 27 632-658 289-315 (424)
331 PF11932 DUF3450: Protein of u 57.7 1.3E+02 0.0028 33.8 12.4 21 707-727 182-203 (251)
332 TIGR02782 TrbB_P P-type conjug 57.4 5.2 0.00011 46.1 1.4 29 208-237 122-150 (299)
333 PF00004 AAA: ATPase family as 57.2 4.7 0.0001 38.8 0.9 15 222-236 1-15 (132)
334 KOG1003 Actin filament-coating 56.6 3.2E+02 0.007 30.4 19.4 33 628-660 109-141 (205)
335 PRK11519 tyrosine kinase; Prov 56.5 5.7E+02 0.012 33.3 21.2 24 427-450 226-249 (719)
336 PRK12723 flagellar biosynthesi 55.3 8.9 0.00019 45.9 2.9 19 218-236 173-191 (388)
337 PF15290 Syntaphilin: Golgi-lo 55.2 2.5E+02 0.0053 32.8 13.8 26 478-503 79-104 (305)
338 PRK00736 hypothetical protein; 54.9 1.2E+02 0.0026 28.0 9.4 32 632-663 23-54 (68)
339 PRK04778 septation ring format 54.8 5.5E+02 0.012 32.5 21.0 25 770-795 517-541 (569)
340 TIGR02338 gimC_beta prefoldin, 54.8 1.6E+02 0.0035 29.2 11.1 36 626-661 65-100 (110)
341 KOG2543 Origin recognition com 54.6 6.2 0.00013 47.2 1.4 39 220-279 31-69 (438)
342 cd01130 VirB11-like_ATPase Typ 53.4 7 0.00015 41.4 1.5 30 207-237 14-43 (186)
343 PRK01156 chromosome segregatio 53.4 6.8E+02 0.015 33.2 23.4 12 1112-1123 826-837 (895)
344 COG4962 CpaF Flp pilus assembl 53.3 6.9 0.00015 46.2 1.5 30 207-237 162-191 (355)
345 TIGR01005 eps_transp_fam exopo 53.1 6.4E+02 0.014 32.8 20.2 22 428-449 154-175 (754)
346 PF10186 Atg14: UV radiation r 52.9 3.7E+02 0.0081 30.1 18.6 17 969-985 276-292 (302)
347 PF10212 TTKRSYEDQ: Predicted 52.7 3E+02 0.0065 34.7 15.0 11 495-505 441-451 (518)
348 PF05970 PIF1: PIF1-like helic 52.6 8.4 0.00018 45.4 2.1 36 198-236 4-39 (364)
349 PF01580 FtsK_SpoIIIE: FtsK/Sp 52.6 5.5 0.00012 42.5 0.6 17 221-237 40-56 (205)
350 PF13870 DUF4201: Domain of un 52.3 3.2E+02 0.0069 29.1 21.7 26 633-658 143-168 (177)
351 PRK13833 conjugal transfer pro 52.3 6.5 0.00014 46.0 1.1 29 208-237 134-162 (323)
352 KOG2751 Beclin-like protein [S 52.1 4.7E+02 0.01 32.3 16.0 21 485-505 147-167 (447)
353 PF13671 AAA_33: AAA domain; P 51.6 7 0.00015 38.6 1.1 16 221-236 1-16 (143)
354 KOG0249 LAR-interacting protei 51.5 3E+02 0.0065 35.9 14.8 16 961-976 676-691 (916)
355 COG4026 Uncharacterized protei 51.4 1.3E+02 0.0029 33.9 10.6 73 547-657 134-206 (290)
356 TIGR03185 DNA_S_dndD DNA sulfu 51.4 6.4E+02 0.014 32.4 22.2 22 742-763 548-570 (650)
357 COG1201 Lhr Lhr-like helicases 51.3 14 0.00031 48.1 4.0 54 210-275 30-83 (814)
358 smart00487 DEXDc DEAD-like hel 50.9 9 0.00019 38.5 1.8 17 221-237 26-42 (201)
359 PRK13342 recombination factor 50.7 8.2 0.00018 46.1 1.7 39 199-237 16-54 (413)
360 TIGR00631 uvrb excinuclease AB 50.7 12 0.00025 47.8 3.1 90 188-282 2-98 (655)
361 PF04102 SlyX: SlyX; InterPro 50.7 75 0.0016 29.2 7.5 30 632-661 22-51 (69)
362 KOG0926 DEAH-box RNA helicase 50.6 9.6 0.00021 49.0 2.2 30 982-1011 1139-1168(1172)
363 PRK13900 type IV secretion sys 50.5 7.1 0.00015 45.7 1.1 30 207-237 149-178 (332)
364 TIGR03499 FlhF flagellar biosy 50.5 7 0.00015 44.5 1.0 17 221-237 196-212 (282)
365 PF11932 DUF3450: Protein of u 50.3 4.1E+02 0.009 29.9 15.1 7 645-651 156-162 (251)
366 PHA02544 44 clamp loader, smal 50.3 8.5 0.00019 43.6 1.7 22 216-237 39-61 (316)
367 PTZ00424 helicase 45; Provisio 50.3 8.4 0.00018 45.0 1.6 26 209-236 57-82 (401)
368 COG4209 LplB ABC-type polysacc 50.1 5.6 0.00012 45.6 0.1 25 728-754 189-213 (309)
369 TIGR03017 EpsF chain length de 50.0 5.3E+02 0.012 31.0 20.4 17 387-403 74-90 (444)
370 PF13094 CENP-Q: CENP-Q, a CEN 49.8 3.2E+02 0.007 28.6 13.0 67 451-517 1-70 (160)
371 PF04102 SlyX: SlyX; InterPro 49.7 82 0.0018 28.9 7.6 48 547-594 3-50 (69)
372 PRK06547 hypothetical protein; 49.7 12 0.00025 39.8 2.4 28 209-236 5-32 (172)
373 PRK11776 ATP-dependent RNA hel 49.7 9.3 0.0002 46.0 1.9 26 209-236 33-58 (460)
374 PF13863 DUF4200: Domain of un 49.6 2.8E+02 0.006 27.6 16.6 22 571-592 83-104 (126)
375 PF07926 TPR_MLP1_2: TPR/MLP1/ 49.6 3E+02 0.0066 28.1 19.1 25 569-593 98-122 (132)
376 KOG0243 Kinesin-like protein [ 49.6 7.8E+02 0.017 33.7 18.7 21 390-410 376-397 (1041)
377 PF05701 WEMBL: Weak chloropla 49.4 6.4E+02 0.014 31.7 23.5 28 629-656 236-263 (522)
378 cd00268 DEADc DEAD-box helicas 49.4 10 0.00022 39.8 2.0 24 211-236 30-53 (203)
379 PF03915 AIP3: Actin interacti 49.2 6E+02 0.013 31.4 18.3 67 484-550 216-287 (424)
380 PRK13851 type IV secretion sys 49.0 7.1 0.00015 46.0 0.8 30 207-237 151-180 (344)
381 TIGR03819 heli_sec_ATPase heli 48.8 13 0.00029 43.7 2.9 30 207-237 167-196 (340)
382 PRK04195 replication factor C 48.5 11 0.00025 45.9 2.4 38 200-237 19-57 (482)
383 PF07058 Myosin_HC-like: Myosi 48.2 5.4E+02 0.012 30.6 20.8 12 852-863 282-293 (351)
384 PF08172 CASP_C: CASP C termin 47.9 3.9E+02 0.0085 30.6 14.1 41 629-669 94-137 (248)
385 KOG2685 Cystoskeletal protein 47.8 6.2E+02 0.013 31.2 17.9 34 628-661 285-318 (421)
386 PRK10361 DNA recombination pro 47.7 6.7E+02 0.014 31.5 18.3 18 812-830 306-323 (475)
387 TIGR01010 BexC_CtrB_KpsE polys 47.5 5.4E+02 0.012 30.3 19.8 23 632-654 282-304 (362)
388 KOG0989 Replication factor C, 47.5 13 0.00028 43.6 2.4 18 220-237 58-75 (346)
389 PRK09183 transposase/IS protei 47.4 11 0.00023 42.5 1.9 21 216-238 101-121 (259)
390 PF13238 AAA_18: AAA domain; P 47.3 8.1 0.00018 37.0 0.8 15 222-236 1-15 (129)
391 PF07889 DUF1664: Protein of u 47.3 3.5E+02 0.0076 28.1 12.7 37 553-589 87-123 (126)
392 PRK10698 phage shock protein P 47.1 4.6E+02 0.0099 29.4 18.8 21 487-507 30-50 (222)
393 PF09728 Taxilin: Myosin-like 47.0 5.4E+02 0.012 30.3 18.4 22 633-654 277-298 (309)
394 PF06414 Zeta_toxin: Zeta toxi 47.0 9.8 0.00021 40.7 1.4 20 217-236 13-32 (199)
395 PF05673 DUF815: Protein of un 46.9 12 0.00025 42.5 2.0 71 187-284 23-94 (249)
396 PF15035 Rootletin: Ciliary ro 46.6 4E+02 0.0086 29.2 13.3 39 551-589 84-122 (182)
397 PF00063 Myosin_head: Myosin h 46.4 10 0.00022 48.3 1.7 34 203-236 68-102 (689)
398 TIGR02231 conserved hypothetic 46.1 2.2E+02 0.0048 35.4 12.9 30 482-511 72-101 (525)
399 PF06818 Fez1: Fez1; InterPro 46.1 3.8E+02 0.0083 29.9 13.2 129 466-594 9-149 (202)
400 TIGR03545 conserved hypothetic 46.0 1.8E+02 0.004 36.8 12.2 22 640-661 249-270 (555)
401 PF00910 RNA_helicase: RNA hel 46.0 7.3 0.00016 37.7 0.2 26 222-257 1-26 (107)
402 PF05496 RuvB_N: Holliday junc 45.9 18 0.00039 40.7 3.2 43 194-236 23-67 (233)
403 PF00580 UvrD-helicase: UvrD/R 45.8 7 0.00015 43.3 0.1 20 218-237 12-31 (315)
404 PF10046 BLOC1_2: Biogenesis o 45.8 2.3E+02 0.0049 27.8 10.4 65 61-126 33-97 (99)
405 PF02562 PhoH: PhoH-like prote 45.7 12 0.00025 41.3 1.7 19 218-236 18-36 (205)
406 PRK00080 ruvB Holliday junctio 45.6 11 0.00023 43.6 1.6 39 199-237 29-69 (328)
407 TIGR00348 hsdR type I site-spe 45.6 13 0.00027 47.6 2.3 30 207-237 247-281 (667)
408 PRK11192 ATP-dependent RNA hel 45.4 12 0.00025 44.7 1.8 26 209-236 30-55 (434)
409 KOG0335 ATP-dependent RNA heli 45.4 9.8 0.00021 46.7 1.2 62 211-279 105-189 (482)
410 PF09766 FimP: Fms-interacting 45.3 4.9E+02 0.011 31.1 15.1 50 541-590 94-143 (355)
411 PF08702 Fib_alpha: Fibrinogen 45.3 3.9E+02 0.0085 28.2 17.9 25 485-509 33-57 (146)
412 PLN03025 replication factor C 45.3 11 0.00024 43.3 1.6 42 189-237 11-52 (319)
413 PF07728 AAA_5: AAA domain (dy 45.2 8.7 0.00019 38.1 0.7 15 222-236 2-16 (139)
414 PF07724 AAA_2: AAA domain (Cd 45.1 11 0.00024 40.0 1.4 17 220-236 4-20 (171)
415 PF03215 Rad17: Rad17 cell cyc 45.0 12 0.00026 46.5 1.9 31 206-236 30-62 (519)
416 TIGR02881 spore_V_K stage V sp 45.0 17 0.00037 40.6 3.0 19 219-237 42-60 (261)
417 TIGR01069 mutS2 MutS2 family p 44.7 4.7E+02 0.01 34.6 16.0 35 916-950 726-762 (771)
418 PF10473 CENP-F_leu_zip: Leuci 44.5 4.1E+02 0.0088 28.1 18.5 14 579-592 122-135 (140)
419 PRK04837 ATP-dependent RNA hel 44.4 12 0.00026 44.5 1.8 26 209-236 37-62 (423)
420 KOG0163 Myosin class VI heavy 44.3 9.1E+02 0.02 32.1 18.1 14 245-258 428-441 (1259)
421 PLN02939 transferase, transfer 44.3 4.8E+02 0.01 35.4 15.9 25 485-509 160-184 (977)
422 TIGR02338 gimC_beta prefoldin, 44.3 3.3E+02 0.0072 27.0 13.1 30 567-596 79-108 (110)
423 TIGR01000 bacteriocin_acc bact 44.0 6.9E+02 0.015 30.6 23.3 36 632-669 288-323 (457)
424 PRK00440 rfc replication facto 43.9 12 0.00026 42.0 1.6 34 200-236 22-55 (319)
425 PRK13729 conjugal transfer pil 43.8 79 0.0017 39.1 8.3 46 547-592 75-120 (475)
426 PF05700 BCAS2: Breast carcino 43.7 2.5E+02 0.0055 31.2 11.7 90 470-559 132-221 (221)
427 PRK09343 prefoldin subunit bet 43.6 3.7E+02 0.008 27.3 14.4 36 565-600 81-116 (121)
428 PF14197 Cep57_CLD_2: Centroso 43.6 2.7E+02 0.0059 25.9 9.9 18 492-509 2-19 (69)
429 PRK13764 ATPase; Provisional 43.4 10 0.00023 47.8 1.1 19 219-237 257-275 (602)
430 PF05701 WEMBL: Weak chloropla 43.3 7.8E+02 0.017 31.0 22.6 18 575-592 336-353 (522)
431 cd00124 MYSc Myosin motor doma 43.3 52 0.0011 42.3 7.1 34 203-236 69-103 (679)
432 PRK10869 recombination and rep 42.6 8.1E+02 0.018 31.0 19.3 18 216-236 22-39 (553)
433 PF10212 TTKRSYEDQ: Predicted 42.6 5.2E+02 0.011 32.7 14.9 23 567-589 492-514 (518)
434 PF04949 Transcrip_act: Transc 42.5 2.7E+02 0.0058 29.8 10.7 89 54-142 43-138 (159)
435 PF09755 DUF2046: Uncharacteri 42.5 6.5E+02 0.014 29.9 25.0 46 547-592 112-158 (310)
436 PRK10590 ATP-dependent RNA hel 42.3 15 0.00032 44.5 2.0 26 209-236 30-55 (456)
437 PF15290 Syntaphilin: Golgi-lo 42.2 6.3E+02 0.014 29.7 14.9 30 477-506 71-100 (305)
438 PRK14722 flhF flagellar biosyn 42.2 12 0.00025 44.8 1.2 19 219-237 137-155 (374)
439 PF02994 Transposase_22: L1 tr 42.0 71 0.0015 38.2 7.6 44 549-592 145-188 (370)
440 KOG2077 JNK/SAPK-associated pr 41.6 6.1E+02 0.013 32.4 15.0 29 563-591 351-379 (832)
441 PRK10536 hypothetical protein; 41.6 13 0.00027 42.6 1.3 42 186-236 50-91 (262)
442 KOG4593 Mitotic checkpoint pro 41.1 9.6E+02 0.021 31.4 23.1 13 979-991 457-469 (716)
443 PRK00771 signal recognition pa 41.1 23 0.00049 43.3 3.4 20 217-236 93-112 (437)
444 PF05010 TACC: Transforming ac 41.0 5.6E+02 0.012 28.7 22.5 12 577-588 126-137 (207)
445 PF14992 TMCO5: TMCO5 family 40.9 2.6E+02 0.0056 32.7 11.3 36 776-811 231-268 (280)
446 PF03148 Tektin: Tektin family 40.8 7.3E+02 0.016 30.0 20.8 115 547-661 243-364 (384)
447 PF05622 HOOK: HOOK protein; 40.8 4.9 0.00011 51.4 -2.3 18 437-454 125-142 (713)
448 TIGR00634 recN DNA repair prot 40.8 3.6E+02 0.0078 34.0 13.7 19 745-763 440-458 (563)
449 TIGR01241 FtsH_fam ATP-depende 40.7 10 0.00022 46.4 0.4 51 186-236 50-105 (495)
450 PHA00729 NTP-binding motif con 40.6 19 0.00042 40.3 2.5 29 209-237 7-35 (226)
451 PF06120 Phage_HK97_TLTM: Tail 40.4 6.9E+02 0.015 29.6 16.0 82 423-506 21-106 (301)
452 PF15188 CCDC-167: Coiled-coil 40.2 91 0.002 30.3 6.5 60 569-656 5-64 (85)
453 PRK00295 hypothetical protein; 39.8 2.7E+02 0.0059 25.7 9.3 31 632-662 23-53 (68)
454 COG2256 MGS1 ATPase related to 39.7 16 0.00034 44.2 1.7 43 189-235 22-64 (436)
455 COG1382 GimC Prefoldin, chaper 39.7 2.4E+02 0.0052 29.0 9.7 16 579-594 30-45 (119)
456 TIGR01389 recQ ATP-dependent D 39.5 15 0.00033 45.8 1.6 26 209-236 20-45 (591)
457 PF03148 Tektin: Tektin family 39.4 7.6E+02 0.017 29.8 18.2 39 111-149 59-97 (384)
458 KOG1514 Origin recognition com 39.3 42 0.00091 43.1 5.2 47 203-259 404-452 (767)
459 PF13870 DUF4201: Domain of un 39.2 5E+02 0.011 27.6 18.8 30 630-659 147-176 (177)
460 PRK00295 hypothetical protein; 39.2 1.8E+02 0.004 26.8 8.1 47 548-594 5-51 (68)
461 TIGR03319 YmdA_YtgF conserved 39.0 9E+02 0.02 30.5 23.2 17 906-922 294-310 (514)
462 cd01382 MYSc_type_VI Myosin mo 39.0 70 0.0015 41.5 7.3 21 216-236 88-108 (717)
463 PRK13341 recombination factor 38.9 16 0.00035 47.1 1.8 45 189-237 26-70 (725)
464 COG1223 Predicted ATPase (AAA+ 38.8 14 0.0003 42.5 1.0 16 221-236 153-168 (368)
465 TIGR02231 conserved hypothetic 38.8 2.5E+02 0.0054 35.0 11.8 86 58-143 73-172 (525)
466 PRK04406 hypothetical protein; 38.7 2.2E+02 0.0048 26.9 8.7 49 546-594 9-57 (75)
467 PF05557 MAD: Mitotic checkpoi 38.4 99 0.0021 40.0 8.6 22 640-661 564-585 (722)
468 PF10473 CENP-F_leu_zip: Leuci 38.2 5.1E+02 0.011 27.4 20.6 21 486-506 15-35 (140)
469 PRK14961 DNA polymerase III su 38.1 22 0.00048 41.9 2.6 41 189-236 14-55 (363)
470 PF06160 EzrA: Septation ring 38.1 9.5E+02 0.021 30.5 19.4 152 485-660 249-411 (560)
471 KOG3771 Amphiphysin [Intracell 38.0 9E+02 0.02 30.2 16.0 44 625-668 172-230 (460)
472 PRK01297 ATP-dependent RNA hel 38.0 17 0.00037 44.1 1.7 26 209-236 116-141 (475)
473 PLN03229 acetyl-coenzyme A car 37.9 3.1E+02 0.0066 36.0 12.3 175 492-668 433-669 (762)
474 KOG1937 Uncharacterized conser 37.9 9.1E+02 0.02 30.2 20.9 23 570-592 463-485 (521)
475 CHL00176 ftsH cell division pr 37.7 18 0.00038 46.2 1.8 47 186-236 178-233 (638)
476 PRK11448 hsdR type I restricti 37.5 15 0.00032 49.7 1.2 34 204-238 419-452 (1123)
477 PRK11889 flhF flagellar biosyn 37.5 22 0.00048 43.2 2.5 18 220-237 242-259 (436)
478 KOG1850 Myosin-like coiled-coi 37.5 7.9E+02 0.017 29.4 20.0 26 487-512 129-154 (391)
479 TIGR00614 recQ_fam ATP-depende 37.2 18 0.00039 44.0 1.7 26 209-236 18-43 (470)
480 cd01377 MYSc_type_II Myosin mo 37.1 85 0.0019 40.6 7.7 34 203-236 74-108 (693)
481 TIGR03752 conj_TIGR03752 integ 36.9 2.2E+02 0.0047 35.5 10.5 22 567-588 121-142 (472)
482 cd01126 TraG_VirD4 The TraG/Tr 36.7 14 0.00031 43.5 0.8 15 222-236 2-16 (384)
483 PRK02119 hypothetical protein; 36.4 2.4E+02 0.0052 26.4 8.5 49 546-594 7-55 (73)
484 KOG4787 Uncharacterized conser 36.3 1.1E+03 0.023 30.5 20.1 36 626-661 499-534 (852)
485 cd01120 RecA-like_NTPases RecA 36.2 15 0.00032 36.2 0.7 16 222-237 2-17 (165)
486 PF02456 Adeno_IVa2: Adenoviru 36.2 17 0.00036 42.7 1.2 16 222-237 90-105 (369)
487 PF10211 Ax_dynein_light: Axon 36.1 6.1E+02 0.013 27.7 20.7 62 531-592 124-186 (189)
488 PRK11331 5-methylcytosine-spec 36.1 21 0.00046 43.7 2.1 30 424-457 320-349 (459)
489 KOG2010 Double stranded RNA bi 36.1 1.9E+02 0.0042 34.2 9.4 75 519-593 125-199 (405)
490 PRK14974 cell division protein 36.1 28 0.00061 41.1 3.0 20 217-236 138-157 (336)
491 PF05729 NACHT: NACHT domain 36.0 17 0.00038 36.1 1.2 16 221-236 2-17 (166)
492 PRK06696 uridine kinase; Valid 35.9 29 0.00064 37.8 3.0 34 203-236 6-39 (223)
493 PF10211 Ax_dynein_light: Axon 35.7 6.2E+02 0.013 27.7 17.9 29 632-660 160-188 (189)
494 PF08172 CASP_C: CASP C termin 35.6 2.7E+02 0.0059 31.8 10.5 44 544-587 82-125 (248)
495 PRK04325 hypothetical protein; 35.5 3.5E+02 0.0076 25.4 9.4 66 572-675 5-73 (74)
496 PRK10416 signal recognition pa 35.5 29 0.00063 40.5 3.0 19 219-237 114-132 (318)
497 TIGR02788 VirB11 P-type DNA tr 35.4 20 0.00043 41.4 1.6 30 207-237 133-162 (308)
498 PRK02793 phi X174 lysis protei 34.8 2.4E+02 0.0052 26.3 8.2 48 547-594 7-54 (72)
499 PRK00131 aroK shikimate kinase 34.8 18 0.0004 36.7 1.1 15 221-235 6-20 (175)
500 TIGR01618 phage_P_loop phage n 34.8 17 0.00037 40.4 0.9 18 219-236 12-29 (220)
No 1
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=2.4e-82 Score=761.74 Aligned_cols=395 Identities=38% Similarity=0.562 Sum_probs=333.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcChhHHHHhhhhhhhcc
Q 001022 62 STKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLDQVALEAEARISPLINEKKRLFNDLLT 141 (1186)
Q Consensus 62 ~~~v~~Lk~~l~~~~~~~~~Lr~e~~d~q~~~~~~l~~v~~~l~~L~~~~~~l~~~~~E~e~r~~~~~~eRkkLhN~l~e 141 (1186)
.+++..|++++..++..+.+++.++..++..+.. .+.........|......+.+.+ .+..+||+|||++++
T Consensus 240 ~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~e 311 (670)
T KOG0239|consen 240 KKKIQALQQELEELKAELKELNDQVSLLTREVQE-------ALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILE 311 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3345555555555555555555555554433322 22222222333444444444555 667889999999999
Q ss_pred CCCCEEEEEeeCCCCCCCCC---c-eEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhchHHhHhhhcCC
Q 001022 142 AKGNIKVFCRTRPLFEDEGP---S-VVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDG 217 (1186)
Q Consensus 142 lkGnIRVf~RVRPl~~~E~~---s-vV~~~d~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFeeV~PLV~svLdG 217 (1186)
+||||||||||||+++++.. . ++..++...+.+..+....+...+.|.||+||+|.++|++||.++.|+|++||||
T Consensus 312 LkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDG 391 (670)
T KOG0239|consen 312 LKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQSALDG 391 (670)
T ss_pred hhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHHHHhcC
Confidence 99999999999999988754 2 3333443456666665544444457999999999999999999999999999999
Q ss_pred ccEEEEeeccCCCCccccccc-CCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCC-CCceEE
Q 001022 218 YNVSIFAYGQTHSGKTHTMEG-SSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG-NGLAKI 295 (1186)
Q Consensus 218 yNvcIfAYGQTGSGKTyTM~G-s~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~-~~~~~i 295 (1186)
||+||||||||||||||||.| +++++|||||++++||..+..... +|.|.+.++|+|||||.|+|||++.. .....|
T Consensus 392 YnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~-g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I 470 (670)
T KOG0239|consen 392 YNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKS-GWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEI 470 (670)
T ss_pred cceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhcc-CceEEeeeehhHHHHHHHHHhccccccccceeE
Confidence 999999999999999999999 699999999999999999988776 99999999999999999999998874 444445
Q ss_pred Eecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccCCceeeeeeEEEecCCC
Q 001022 296 RLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGS 369 (1186)
Q Consensus 296 ~~~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLAGS 369 (1186)
..+. ...+.+++...|.+..++..+++.|..+|+++.|. |||||+||+|+|...+..++..+.++|+|||||||
T Consensus 471 ~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGS 550 (670)
T KOG0239|consen 471 VDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGS 550 (670)
T ss_pred EEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEeecccC
Confidence 4433 35688999999999999999999999999999885 89999999999999999999999999999999999
Q ss_pred ccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCccccEEEeeCCCCCCHHHHHHH
Q 001022 370 EGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSS 449 (1186)
Q Consensus 370 ER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~ETLsT 449 (1186)
||+++++++|+|++|+++||+||++||+||.||+.++.||||||||||+||||+|||++||+|||+|||...++.||+++
T Consensus 551 ER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~s 630 (670)
T KOG0239|consen 551 ERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCS 630 (670)
T ss_pred cccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcccccCc
Q 001022 450 LNFSSRARSTVLSLGN 465 (1186)
Q Consensus 450 LrFAsRAR~I~~~~~n 465 (1186)
|+||+|++.+.+++..
T Consensus 631 L~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 631 LRFATRVRSVELGSAR 646 (670)
T ss_pred cchHHHhhceeccccc
Confidence 9999999999987544
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1e-79 Score=744.51 Aligned_cols=350 Identities=33% Similarity=0.492 Sum_probs=295.3
Q ss_pred cCCCCEEEEEeeCCCCCCCC----CceEeecC-CcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhHhhh
Q 001022 141 TAKGNIKVFCRTRPLFEDEG----PSVVEFTD-DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSA 214 (1186)
Q Consensus 141 elkGnIRVf~RVRPl~~~E~----~svV~~~d-~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFee-V~PLV~sv 214 (1186)
+..-||+|+|||||+++.|. +.+|.+++ ...|.|.....+. .-.++|+||+||||.+.|.+||+. |+|+|..|
T Consensus 46 e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk-~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eV 124 (1041)
T KOG0243|consen 46 EKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASK-QIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEV 124 (1041)
T ss_pred CCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccc-cccceeecceeeCcchhHHHHHHHHHHHHHHHH
Confidence 44569999999999998873 45677777 4557777652221 146899999999999999999997 69999999
Q ss_pred cCCccEEEEeeccCCCCccccccc--------CCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCC
Q 001022 215 LDGYNVSIFAYGQTHSGKTHTMEG--------SSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLP 286 (1186)
Q Consensus 215 LdGyNvcIfAYGQTGSGKTyTM~G--------s~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~ 286 (1186)
+.|||||||||||||+||||||+| .+.+.|||||++.+||+.+.. .+.+|.|+|||+|+|||.++|||+
T Consensus 125 l~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~---~~~EYsvKVSfLELYNEEl~DLLa 201 (1041)
T KOG0243|consen 125 LEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEA---QGAEYSVKVSFLELYNEELTDLLA 201 (1041)
T ss_pred hccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHh---cCCeEEEEEEehhhhhHHHHHhcC
Confidence 999999999999999999999999 567899999999999998864 347899999999999999999999
Q ss_pred CCCCC--ceEEEec-------ccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeec-c
Q 001022 287 QTGNG--LAKIRLQ-------SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNL-I 352 (1186)
Q Consensus 287 ~~~~~--~~~i~~~-------~~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~-~ 352 (1186)
+.... ...+..+ .+..+.|+-+..|+++.++..+|..|...|.+++|. |||||+||+|+|..... .
T Consensus 202 ~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~ 281 (1041)
T KOG0243|consen 202 SEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTP 281 (1041)
T ss_pred CccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCC
Confidence 87653 2222111 123456899999999999999999999999999884 99999999999976543 3
Q ss_pred CCc--eeeeeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCccc
Q 001022 353 TGE--NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKT 430 (1186)
Q Consensus 353 tg~--~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~~hVPYRdSKLTrLLqDSLGGNSKT 430 (1186)
.|+ ...|||+||||||||..+++|+.+.|.+|++.||+||.+||+||+||.++.+|||||+|||||||||||||.+||
T Consensus 282 ~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT 361 (1041)
T KOG0243|consen 282 EGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKT 361 (1041)
T ss_pred cchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCcee
Confidence 333 346999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeeCCCCCCHHHHHHHhHHHHHHhhcccccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 431 LMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEAND 509 (1186)
Q Consensus 431 lMIv~ISPs~~~~~ETLsTLrFAsRAR~I~~~~~n~~~ikk~k~i~~~~~~el~~le~eI~eLkeEI~~Lr~~L~~~~~ 509 (1186)
+||+||||+..+++||++||.||.||++|+++|....... +...+++|-.||++|+..+.++.+
T Consensus 362 ~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~---------------K~~llKd~~~EIerLK~dl~AaRe 425 (1041)
T KOG0243|consen 362 CIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLM---------------KKTLLKDLYEEIERLKRDLAAARE 425 (1041)
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHH---------------HHHHHHHHHHHHHHHHHHHHHhHh
Confidence 9999999999999999999999999999988776543322 234556666666666666655543
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.9e-78 Score=703.42 Aligned_cols=347 Identities=35% Similarity=0.520 Sum_probs=294.1
Q ss_pred CCCEEEEEeeCCCCCCCCC----ceEeec-CCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHhHhhhcC
Q 001022 143 KGNIKVFCRTRPLFEDEGP----SVVEFT-DDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALD 216 (1186)
Q Consensus 143 kGnIRVf~RVRPl~~~E~~----svV~~~-d~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFeeV-~PLV~svLd 216 (1186)
..+|+|++|+||+.+.+.. .++.++ ....+.+.++.......++.|+||.||+++++|++||+.+ .|+|++|++
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~ 83 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLE 83 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhc
Confidence 4689999999999875521 233333 3345566666666666778999999999999999999986 899999999
Q ss_pred CccEEEEeeccCCCCcccccccC-CCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCCCCceEE
Q 001022 217 GYNVSIFAYGQTHSGKTHTMEGS-SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 295 (1186)
Q Consensus 217 GyNvcIfAYGQTGSGKTyTM~Gs-~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~~i 295 (1186)
|||+||||||||||||||||.|+ ++..|||||++++||..|+.... ...|.|+|||+|||||.|+|||++.+.....+
T Consensus 84 GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~-~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~l 162 (574)
T KOG4280|consen 84 GYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKE-KTRFLVRVSYLEIYNESIRDLLSPVNPKGLEL 162 (574)
T ss_pred ccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccc-cceEEEEeehHHHHhHHHHHHhCccCcCCcee
Confidence 99999999999999999999998 67799999999999999986543 33899999999999999999999987655555
Q ss_pred Eecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeec-cCC--ceeeeeeEEEec
Q 001022 296 RLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNL-ITG--ENLYSKLSLVDL 366 (1186)
Q Consensus 296 ~~~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~-~tg--~~~~SkL~LVDL 366 (1186)
+.+. +.++.+++...|.+++++..+|..|..+|.+++|. |||||+||+|+|++... ..+ ....|+|+||||
T Consensus 163 re~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDL 242 (574)
T KOG4280|consen 163 REDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDL 242 (574)
T ss_pred eEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeeec
Confidence 5543 45677999999999999999999999999998875 99999999999998322 222 345799999999
Q ss_pred CCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCCC-cccCCCCccccccccccCCCccccEEEeeCCCCCCHHH
Q 001022 367 AGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD-IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSE 445 (1186)
Q Consensus 367 AGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~~-hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~E 445 (1186)
|||||..+++++|+|++||.+||+||++||+||.+|++++. ||||||||||+||||||||||+|+||+||+|...+++|
T Consensus 243 agsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~E 322 (574)
T KOG4280|consen 243 AGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEE 322 (574)
T ss_pred cchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHH
Confidence 99999999999999999999999999999999999999766 99999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHhhcccccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 446 TLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKE 506 (1186)
Q Consensus 446 TLsTLrFAsRAR~I~~~~~n~~~ikk~k~i~~~~~~el~~le~eI~eLkeEI~~Lr~~L~~ 506 (1186)
|++||+||+||+.|.+.+. ++. + ..+..+.+|++||..|+.++..
T Consensus 323 TlsTLrfA~Rak~I~nk~~----ine------d------~~~~~~~~lq~ei~~Lk~~l~~ 367 (574)
T KOG4280|consen 323 TLSTLRFAQRAKAIKNKPV----INE------D------PKDALLRELQEEIERLKKELDP 367 (574)
T ss_pred HHHHHHHHHHHHHhhcccc----ccC------C------cchhhHHHHHHHHHHHHHhhcc
Confidence 9999999999999876432 211 1 1245556666666666666543
No 4
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-76 Score=705.27 Aligned_cols=345 Identities=31% Similarity=0.507 Sum_probs=299.3
Q ss_pred CCEEEEEeeCCCCCCCC---C-ceEeecCCcEEEEecCCCccCCCCceeecceeeCCC-------CChhhHHhch-HHhH
Q 001022 144 GNIKVFCRTRPLFEDEG---P-SVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPH-------VGQAELFSDV-QPFV 211 (1186)
Q Consensus 144 GnIRVf~RVRPl~~~E~---~-svV~~~d~~tI~v~~~~~~~~~~~k~FtFD~VF~p~-------asQeeVFeeV-~PLV 211 (1186)
.+|+|.||||||+..|. . ++|.+.++. +.+..+... .....|+||++||.. ++|..||+++ .|++
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~-ttii~~~~~--k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL 80 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDAKCVVQMQGNT-TTIINPKGS--KDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREML 80 (1221)
T ss_pred CceEEEEEeccchhhhhhcccceEEEecCCc-eeeecCCCc--ccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHH
Confidence 58999999999998773 2 345555444 444333322 223459999999876 4799999998 8999
Q ss_pred hhhcCCccEEEEeeccCCCCcccccccCC--CCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCC-CC
Q 001022 212 QSALDGYNVSIFAYGQTHSGKTHTMEGSS--HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLP-QT 288 (1186)
Q Consensus 212 ~svLdGyNvcIfAYGQTGSGKTyTM~Gs~--~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~-~~ 288 (1186)
+.+++|||+||||||||||||||||+|-. +++|||||++++||..+.........|.|.|||+|||||+|+|||+ +.
T Consensus 81 ~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~ 160 (1221)
T KOG0245|consen 81 DHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPK 160 (1221)
T ss_pred HHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCC
Confidence 99999999999999999999999999976 8999999999999999998888889999999999999999999999 77
Q ss_pred CCCceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeecc--CC--ceee
Q 001022 289 GNGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI--TG--ENLY 358 (1186)
Q Consensus 289 ~~~~~~i~~~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~--tg--~~~~ 358 (1186)
+.+..+++... +.+|.+|+...|+|..++..++..|.+.|++++|+ |||||+||+|.+.+.... ++ ...+
T Consensus 161 ~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~ 240 (1221)
T KOG0245|consen 161 SKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKV 240 (1221)
T ss_pred CCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceee
Confidence 77777777654 56788999999999999999999999999999886 999999999999887543 22 4578
Q ss_pred eeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhcc-------CCCcccCCCCccccccccccCCCcccc
Q 001022 359 SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS-------RKDIVPYENSMLTKVLADSLGESSKTL 431 (1186)
Q Consensus 359 SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~-------k~~hVPYRdSKLTrLLqDSLGGNSKTl 431 (1186)
|+++|||||||||+..+|+.|+|+||+.+|||||.+||.||+||++ +..+||||||.||+||+++|||||||+
T Consensus 241 SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTa 320 (1221)
T KOG0245|consen 241 SKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTA 320 (1221)
T ss_pred eeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhh
Confidence 9999999999999999999999999999999999999999999985 234999999999999999999999999
Q ss_pred EEEeeCCCCCCHHHHHHHhHHHHHHhhccccc-CcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 432 MIVNICPNAANMSETLSSLNFSSRARSTVLSL-GNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEAN 508 (1186)
Q Consensus 432 MIv~ISPs~~~~~ETLsTLrFAsRAR~I~~~~-~n~~~ikk~k~i~~~~~~el~~le~eI~eLkeEI~~Lr~~L~~~~ 508 (1186)
||++|||.+-||+|||+|||||.|||+|++.. .|.+ .-.+.|++|++|+.+|+..+....
T Consensus 321 MIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEd-----------------pnaKLIRELreEv~rLksll~~~~ 381 (1221)
T KOG0245|consen 321 MIAALSPADINYEETLSTLRYADRAKQIVNNAVVNED-----------------PNAKLIRELREEVARLKSLLRAQG 381 (1221)
T ss_pred hhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCC-----------------ccHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999987542 2222 335788999999999998876543
No 5
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.3e-74 Score=662.45 Aligned_cols=353 Identities=33% Similarity=0.478 Sum_probs=294.6
Q ss_pred CCCCEEEEEeeCCCCCCCC----CceEeecC-CcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhHhhhc
Q 001022 142 AKGNIKVFCRTRPLFEDEG----PSVVEFTD-DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSAL 215 (1186)
Q Consensus 142 lkGnIRVf~RVRPl~~~E~----~svV~~~d-~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFee-V~PLV~svL 215 (1186)
.-++|+|+||+||.+..|. ..+..+.. ..++.+...+. .+.|.||+||.|+++|++||+. +.|+|++||
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~-----~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL 79 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKE-----TKTYVFDRVFSPNATQEDVYEFAAKPIVDDVL 79 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccc-----cccceeeeecCCCccHHHHHHHHHHHHHHHHh
Confidence 3479999999999986652 22333333 45666554332 2889999999999999999997 589999999
Q ss_pred CCccEEEEeeccCCCCcccccccCCC---CCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCCCCc
Q 001022 216 DGYNVSIFAYGQTHSGKTHTMEGSSH---DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGL 292 (1186)
Q Consensus 216 dGyNvcIfAYGQTGSGKTyTM~Gs~~---~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~ 292 (1186)
.|||+||||||||||||||||.|..+ ..||+||++++||+.|.+.. .+.+|.|+|||||||+|+|+|||++.....
T Consensus 80 ~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~-~n~efhVkVsy~EIYmEKi~DLL~~~k~nl 158 (607)
T KOG0240|consen 80 LGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSME-ENLEFHVKVSYFEIYMEKIRDLLDPEKTNL 158 (607)
T ss_pred cccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCc-ccceEEEEEEeehhhhhHHHHHhCcccCCc
Confidence 99999999999999999999999765 56999999999999998643 467999999999999999999999876554
Q ss_pred eEEEec-ccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccCCceeeeeeEEEecC
Q 001022 293 AKIRLQ-SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLA 367 (1186)
Q Consensus 293 ~~i~~~-~~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLA 367 (1186)
...+.. -..++.|++...|.++++++++++.|..+|+++.|+ |||||+||+|+|++.+..+.....|+|.|||||
T Consensus 159 svheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVDLa 238 (607)
T KOG0240|consen 159 SVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVDLA 238 (607)
T ss_pred eeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEEEcc
Confidence 333221 234677999999999999999999999999988775 999999999999999999999999999999999
Q ss_pred CCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccC-CCcccCCCCccccccccccCCCccccEEEeeCCCCCCHHHH
Q 001022 368 GSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSET 446 (1186)
Q Consensus 368 GSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k-~~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~ET 446 (1186)
|||+++++|+.|.-+.|+.+||+||++||+||++|+.+ +.|||||||||||||||+|||||+|.+|+|++|+..+..||
T Consensus 239 GSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET 318 (607)
T KOG0240|consen 239 GSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAET 318 (607)
T ss_pred cccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccccccc
Confidence 99999999999999999999999999999999999997 89999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHhhcccccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 447 LSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLR 501 (1186)
Q Consensus 447 LsTLrFAsRAR~I~~~~~n~~~ikk~k~i~~~~~~el~~le~eI~eLkeEI~~Lr 501 (1186)
.+||+|++||+.|.+.+.-+.. ........+...+.+....++..++.+...|+
T Consensus 319 ~STl~fg~rak~ikN~v~~n~e-~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~ 372 (607)
T KOG0240|consen 319 KSTLRFGNRAKTIKNTVWVNLE-LTAEEWKRKLEKKKDKNVALKEELEKLRNSLK 372 (607)
T ss_pred ccchhhccccccccchhhhhhH-hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 9999999999998765433221 12233333444444444444444444444443
No 6
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=2.1e-73 Score=642.25 Aligned_cols=313 Identities=32% Similarity=0.545 Sum_probs=279.7
Q ss_pred CEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCc--------cCCCCceeecceeeCCCCChhhHHhch-HHhH
Q 001022 145 NIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDT--------ISNPKKDFEFDRVYGPHVGQAELFSDV-QPFV 211 (1186)
Q Consensus 145 nIRVf~RVRPl~~~E----~~svV~~~d~~tI~v~~~~~~--------~~~~~k~FtFD~VF~p~asQeeVFeeV-~PLV 211 (1186)
||+|||||||+.+.| ...+|.+.++..+.+.+.... .....+.|.||+||+++++|++||+.+ .|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 799999999999765 346788888877776654321 123468999999999999999999986 7999
Q ss_pred hhhcCCccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCCCC
Q 001022 212 QSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNG 291 (1186)
Q Consensus 212 ~svLdGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~ 291 (1186)
+++++|||+||||||||||||||||+|++.++|||||++++||+.++... ..+.|.|++||+|||||+|+|||++....
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~-~~~~~~v~vS~~EIyne~v~DLL~~~~~~ 159 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERK-DDKEFEVSLSYLEIYNETIRDLLSPSSGP 159 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcc-cCceEEEEEEEEEEECCEEEECCCCCCCC
Confidence 99999999999999999999999999999999999999999999987544 46889999999999999999999886433
Q ss_pred ceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeecc---CCceeeeeeE
Q 001022 292 LAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI---TGENLYSKLS 362 (1186)
Q Consensus 292 ~~~i~~~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~---tg~~~~SkL~ 362 (1186)
..++.+. ...+.++++..|.+.++++.++..|..+|....|. |||||+||+|+|.+.+.. ......|+|+
T Consensus 160 -l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~ 238 (338)
T cd01370 160 -LELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLS 238 (338)
T ss_pred -ceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEE
Confidence 3444443 34567899999999999999999999999988774 899999999999988765 4556789999
Q ss_pred EEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCC---CcccCCCCccccccccccCCCccccEEEeeCCC
Q 001022 363 LVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTLMIVNICPN 439 (1186)
Q Consensus 363 LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~---~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs 439 (1186)
|||||||||..+++..|.+++|+.+||+||++|++||.+|+.++ .||||||||||+||+|+|||||+|+||+||||+
T Consensus 239 ~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~ 318 (338)
T cd01370 239 LIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPS 318 (338)
T ss_pred EEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCc
Confidence 99999999999999999999999999999999999999999877 899999999999999999999999999999999
Q ss_pred CCCHHHHHHHhHHHHHHhhc
Q 001022 440 AANMSETLSSLNFSSRARST 459 (1186)
Q Consensus 440 ~~~~~ETLsTLrFAsRAR~I 459 (1186)
..+++||++||+||+||++|
T Consensus 319 ~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 319 SSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred hhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999875
No 7
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=4.8e-73 Score=691.51 Aligned_cols=342 Identities=29% Similarity=0.464 Sum_probs=289.0
Q ss_pred CCCEEEEEeeCCCCCCCC-CceEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHhHhhhcCCccE
Q 001022 143 KGNIKVFCRTRPLFEDEG-PSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDGYNV 220 (1186)
Q Consensus 143 kGnIRVf~RVRPl~~~E~-~svV~~~d~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFeeV-~PLV~svLdGyNv 220 (1186)
.++|+|||||||+.+.|. ..++...++..+.+. .+.|.||+||+++++|++||+.+ .|+|+++++|||+
T Consensus 97 ds~VkV~VRVRPl~~~E~g~~iV~~~s~dsl~I~---------~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNa 167 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEEGEMIVQKMSNDSLTIN---------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNS 167 (1320)
T ss_pred CCCeEEEEEcCCCCCccCCCeeEEEcCCCeEEEe---------CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcc
Confidence 579999999999987763 334444555555553 36899999999999999999986 8999999999999
Q ss_pred EEEeeccCCCCcccccccCC----------CCCCcHHHHHHHHHHhhccC----cccccccceeEEEEEEecccccccCC
Q 001022 221 SIFAYGQTHSGKTHTMEGSS----------HDRGLYARCFEELFDLSNSD----TTATARFNFAVTVFELYNEQLRELLP 286 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM~Gs~----------~~~GIIPRaledLF~~i~~~----~~~~~~y~V~VS~lEIYNE~V~DLL~ 286 (1186)
||||||||||||||||+|+. .++|||||++++||+.+... ......|.|+|||+|||||+|+|||+
T Consensus 168 TIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLs 247 (1320)
T PLN03188 168 SVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLD 247 (1320)
T ss_pred eeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceeccc
Confidence 99999999999999999963 56899999999999988642 22456899999999999999999998
Q ss_pred CCCCCceEEEec--ccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeecc--C--Cce
Q 001022 287 QTGNGLAKIRLQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI--T--GEN 356 (1186)
Q Consensus 287 ~~~~~~~~i~~~--~~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~--t--g~~ 356 (1186)
+.... ..++.+ ....+.+++++.|.+.+++..+|..|..+|.++.|. |||||+||+|+|...... . ...
T Consensus 248 p~~k~-L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~ 326 (1320)
T PLN03188 248 PSQKN-LQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSF 326 (1320)
T ss_pred cccCC-ceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcce
Confidence 76543 334433 334577899999999999999999999999988874 999999999999875432 2 224
Q ss_pred eeeeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhcc-----CCCcccCCCCccccccccccCCCcccc
Q 001022 357 LYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS-----RKDIVPYENSMLTKVLADSLGESSKTL 431 (1186)
Q Consensus 357 ~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~-----k~~hVPYRdSKLTrLLqDSLGGNSKTl 431 (1186)
..|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+. +..||||||||||+||||+|||||+|+
T Consensus 327 r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTv 406 (1320)
T PLN03188 327 KTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLA 406 (1320)
T ss_pred EEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEE
Confidence 579999999999999999999999999999999999999999999975 457999999999999999999999999
Q ss_pred EEEeeCCCCCCHHHHHHHhHHHHHHhhcccccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 432 MIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQAL 504 (1186)
Q Consensus 432 MIv~ISPs~~~~~ETLsTLrFAsRAR~I~~~~~n~~~ikk~k~i~~~~~~el~~le~eI~eLkeEI~~Lr~~L 504 (1186)
|||||||...+++||++||+||+||+.|++.+..+... ...+..+.+.|.+|++|+.+|+...
T Consensus 407 MIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~----------~~~vn~LrelIr~Lk~EL~rLK~~~ 469 (1320)
T PLN03188 407 MVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVM----------QDDVNFLREVIRQLRDELQRVKANG 469 (1320)
T ss_pred EEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccch----------hhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998755322111 1122345678889999998888764
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=2.5e-72 Score=633.33 Aligned_cols=309 Identities=36% Similarity=0.487 Sum_probs=268.5
Q ss_pred CCEEEEEeeCCCCCCCC----CceEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHhHhhhcCCc
Q 001022 144 GNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDGY 218 (1186)
Q Consensus 144 GnIRVf~RVRPl~~~E~----~svV~~~d~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFeeV-~PLV~svLdGy 218 (1186)
+||||||||||+.+.|. ..++...++.++.+... +.+.|.||+||+++++|++||+.+ .|+|+++++||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~------~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~ 74 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH------PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGY 74 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCC------CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 58999999999987763 34555555555554432 248999999999999999999986 89999999999
Q ss_pred cEEEEeeccCCCCcccccccCC--------CCCCcHHHHHHHHHHhhccC---cccccccceeEEEEEEecccccccCCC
Q 001022 219 NVSIFAYGQTHSGKTHTMEGSS--------HDRGLYARCFEELFDLSNSD---TTATARFNFAVTVFELYNEQLRELLPQ 287 (1186)
Q Consensus 219 NvcIfAYGQTGSGKTyTM~Gs~--------~~~GIIPRaledLF~~i~~~---~~~~~~y~V~VS~lEIYNE~V~DLL~~ 287 (1186)
|+||||||||||||||||+|+. .++|||||++++||..+... ......|.|.+||+|||||+|+|||++
T Consensus 75 n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~ 154 (337)
T cd01373 75 NGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDP 154 (337)
T ss_pred ceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCC
Confidence 9999999999999999999975 36899999999999987643 224568999999999999999999987
Q ss_pred CCCCceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccCC--ceeee
Q 001022 288 TGNGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITG--ENLYS 359 (1186)
Q Consensus 288 ~~~~~~~i~~~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~tg--~~~~S 359 (1186)
.... ..++.+. ...+.++++..|.+.+|+..++..|..+|..+.|. |||||+||+|+|...+...+ ....|
T Consensus 155 ~~~~-l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s 233 (337)
T cd01373 155 TSRN-LKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTS 233 (337)
T ss_pred CCCC-ceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEE
Confidence 6544 3444332 34567899999999999999999999999888764 89999999999987654433 34579
Q ss_pred eeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhcc----CCCcccCCCCccccccccccCCCccccEEEe
Q 001022 360 KLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS----RKDIVPYENSMLTKVLADSLGESSKTLMIVN 435 (1186)
Q Consensus 360 kL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~----k~~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ 435 (1186)
+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+. +..|||||+||||+||+|+|||||+|+||+|
T Consensus 234 ~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~ 313 (337)
T cd01373 234 RLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIAN 313 (337)
T ss_pred EEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEE
Confidence 999999999999999999999999999999999999999999974 4689999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHhHHHHHHhhc
Q 001022 436 ICPNAANMSETLSSLNFSSRARST 459 (1186)
Q Consensus 436 ISPs~~~~~ETLsTLrFAsRAR~I 459 (1186)
|||+..+++||++||+||+||+.|
T Consensus 314 vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 314 VSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred ECCCcccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999875
No 9
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.5e-71 Score=628.91 Aligned_cols=307 Identities=31% Similarity=0.493 Sum_probs=273.8
Q ss_pred CCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCcc--------CCCCceeecceeeCCCCChhhHHhch-HHh
Q 001022 144 GNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTI--------SNPKKDFEFDRVYGPHVGQAELFSDV-QPF 210 (1186)
Q Consensus 144 GnIRVf~RVRPl~~~E----~~svV~~~d~~tI~v~~~~~~~--------~~~~k~FtFD~VF~p~asQeeVFeeV-~PL 210 (1186)
.+|+|||||||+.+.| ...++.+.++.+|.+.++.... ....+.|.||+||+++++|++||+.+ .|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~ 80 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPL 80 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHH
Confidence 3799999999998875 4567888889999988765421 23568999999999999999999985 899
Q ss_pred HhhhcCCccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCCC
Q 001022 211 VQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN 290 (1186)
Q Consensus 211 V~svLdGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~ 290 (1186)
|+++++|||+||||||||||||||||+|++.++|||||++++||+.+.. |.|.+||+|||||+|+|||++...
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~-------~~v~~S~~EIyne~v~DLL~~~~~ 153 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG-------YSVFVSYVEIYNNYIYDLLEDSPS 153 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh-------eeEEEEEEEEeCCEeEeCCCCccc
Confidence 9999999999999999999999999999999999999999999998753 899999999999999999987653
Q ss_pred C-----ceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccC------
Q 001022 291 G-----LAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT------ 353 (1186)
Q Consensus 291 ~-----~~~i~~~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~t------ 353 (1186)
. ...++.+. ...+.+++++.|.+.+++..++..|.++|..+.|. |||||+||+|++.+.+...
T Consensus 154 ~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~ 233 (345)
T cd01368 154 STKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQ 233 (345)
T ss_pred cccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCccccccc
Confidence 2 33444443 23466899999999999999999999999988774 8999999999998765432
Q ss_pred --CceeeeeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhcc------CCCcccCCCCccccccccccC
Q 001022 354 --GENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS------RKDIVPYENSMLTKVLADSLG 425 (1186)
Q Consensus 354 --g~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~------k~~hVPYRdSKLTrLLqDSLG 425 (1186)
+....|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+. +..|||||+||||+||+|+||
T Consensus 234 ~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~ 313 (345)
T cd01368 234 DKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFD 313 (345)
T ss_pred CCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcC
Confidence 345679999999999999999999999999999999999999999999986 568999999999999999999
Q ss_pred CCccccEEEeeCCCCCCHHHHHHHhHHHHHHh
Q 001022 426 ESSKTLMIVNICPNAANMSETLSSLNFSSRAR 457 (1186)
Q Consensus 426 GNSKTlMIv~ISPs~~~~~ETLsTLrFAsRAR 457 (1186)
|||+|+||+||||+..+++||++||+||++|+
T Consensus 314 g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 314 GEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999985
No 10
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.5e-71 Score=665.44 Aligned_cols=350 Identities=31% Similarity=0.490 Sum_probs=291.1
Q ss_pred CCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCc-cCCCCceeecceeeCCCCChhhHHhc-hHHhHhhhcCC
Q 001022 144 GNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDT-ISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALDG 217 (1186)
Q Consensus 144 GnIRVf~RVRPl~~~E----~~svV~~~d~~tI~v~~~~~~-~~~~~k~FtFD~VF~p~asQeeVFee-V~PLV~svLdG 217 (1186)
.+|.|+|||||+.+.+ ..+.+...++..+........ .......|.||+||+++++|++||+. ++|+|.+|++|
T Consensus 6 ~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G 85 (675)
T KOG0242|consen 6 EKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEG 85 (675)
T ss_pred ceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhcC
Confidence 5899999999998763 223445555555444332110 01115889999999999999999997 79999999999
Q ss_pred ccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCCCCceEEEe
Q 001022 218 YNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL 297 (1186)
Q Consensus 218 yNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~~i~~ 297 (1186)
||++|||||||||||||||.|...+|||||+++.+||+.|.... .+.|.|.|||+|||||.|+|||++++.. ..++.
T Consensus 86 ~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~--~r~f~v~vSYlEIYNE~I~DLL~~~~~~-L~irE 162 (675)
T KOG0242|consen 86 FNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSG--EREFSVRVSYLEIYNERIRDLLNPDGGD-LRLRE 162 (675)
T ss_pred cccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcC--CceeEEEEEEEEEeccccccccCCCCCC-ceEeE
Confidence 99999999999999999999999999999999999999998654 7899999999999999999999998765 34444
Q ss_pred cc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccCCceeeeeeEEEecCCCcc
Q 001022 298 QS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEG 371 (1186)
Q Consensus 298 ~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLAGSER 371 (1186)
+. ...|.+++++.|.+.+++..+|..|..+|+++.|. |||||+||+|.|......... ..|+|+|||||||||
T Consensus 163 D~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~-~~s~L~lIDLAGSER 241 (675)
T KOG0242|consen 163 DSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASS-RVSKLNLIDLAGSER 241 (675)
T ss_pred cCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccc-hhheehhhhhhhhhh
Confidence 43 34567999999999999999999999999998875 999999999999987654432 678999999999999
Q ss_pred ccccCCccchhHHHHHhhhhhHHHHHHHHhhccC--CCcccCCCCccccccccccCCCccccEEEeeCCCCCCHHHHHHH
Q 001022 372 LIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR--KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSS 449 (1186)
Q Consensus 372 ~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k--~~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~ETLsT 449 (1186)
+.++++.|.|++|+.+||+||++||+||++|+.+ ..||||||||||||||++|||||+|+|||||+|...+|+||.+|
T Consensus 242 as~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nT 321 (675)
T KOG0242|consen 242 ASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNT 321 (675)
T ss_pred hhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHH
Confidence 9999999999999999999999999999999986 46899999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcccccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 450 LNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALK 505 (1186)
Q Consensus 450 LrFAsRAR~I~~~~~n~~~ikk~k~i~~~~~~el~~le~eI~eLkeEI~~Lr~~L~ 505 (1186)
|+||+||++|.+.+........ +. .+..++.++..|+.++..++....
T Consensus 322 L~fAsrak~i~~~~~~n~~~~~-~~-------~~~~~~~~i~~l~~e~~~~~~~~~ 369 (675)
T KOG0242|consen 322 LKFASRAKEITTKAQVNVILSD-KA-------LLKYLQREIAELEAELERLKKKLE 369 (675)
T ss_pred HHHHHHhhhcccccccceecch-hh-------hhHHHHHHHHHHHHHHHhhccccc
Confidence 9999999999866532211110 11 111224566666666666554443
No 11
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=3.7e-70 Score=612.19 Aligned_cols=306 Identities=31% Similarity=0.453 Sum_probs=271.4
Q ss_pred CCEEEEEeeCCCCCCCC----CceEeecCCcEEEEecCCCccC----CCCceeecceeeCCCCChhhHHhc-hHHhHhhh
Q 001022 144 GNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDDTIS----NPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSA 214 (1186)
Q Consensus 144 GnIRVf~RVRPl~~~E~----~svV~~~d~~tI~v~~~~~~~~----~~~k~FtFD~VF~p~asQeeVFee-V~PLV~sv 214 (1186)
+||+|||||||+.+.|. ..++.+++++++.+..+..... ...+.|+||+||+++++|++||+. +.|+|+++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 58999999999998773 4667777767888876533211 125789999999999999999998 58999999
Q ss_pred cCCccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCCCCceE
Q 001022 215 LDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAK 294 (1186)
Q Consensus 215 LdGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~~ 294 (1186)
++|||+||||||||||||||||+|+..++||+||++++||+.++... ..|.|++||+|||||+|+|||++.. ...
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~---~~~~v~~S~~EIy~e~v~DLL~~~~--~l~ 155 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN---DDLGVTVSFFEIYGGKLFDLLNDRK--RLS 155 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc---cccEEEEEEEeeecCchhhhccCcc--cee
Confidence 99999999999999999999999999999999999999999886543 6899999999999999999998732 334
Q ss_pred EEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccCCceeeeeeEEEecCC
Q 001022 295 IRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAG 368 (1186)
Q Consensus 295 i~~~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLAG 368 (1186)
++.+. ...+.+++++.|.+++++..++..|..+|..+.|. |||||+||+|+|.+.+. ....|+|+||||||
T Consensus 156 i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~s~l~~vDLAG 232 (322)
T cd01367 156 VLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---NKLLGKLSFIDLAG 232 (322)
T ss_pred EEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---CeeEEEEEEeecCC
Confidence 44433 33567899999999999999999999999888764 89999999999998764 45689999999999
Q ss_pred CccccccC-CccchhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCccccEEEeeCCCCCCHHHHH
Q 001022 369 SEGLIAED-DSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETL 447 (1186)
Q Consensus 369 SER~~ks~-a~G~RLkEa~~INkSLsALg~VIsALa~k~~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~ETL 447 (1186)
|||...++ ..|.+++|+.+||+||++|++||.+|+.++.||||||||||+||+|+|||||+|+||+||||+..+++||+
T Consensus 233 sE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl 312 (322)
T cd01367 233 SERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTL 312 (322)
T ss_pred ccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHH
Confidence 99998765 57899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHh
Q 001022 448 SSLNFSSRAR 457 (1186)
Q Consensus 448 sTLrFAsRAR 457 (1186)
+||+||+|++
T Consensus 313 ~tL~fa~r~k 322 (322)
T cd01367 313 NTLRYADRVK 322 (322)
T ss_pred HHHHHHHhhC
Confidence 9999999985
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.2e-69 Score=615.18 Aligned_cols=319 Identities=33% Similarity=0.516 Sum_probs=280.9
Q ss_pred CCEEEEEeeCCCCCCCC----CceEeecCCcEEEEecCCC--ccCCCCceeecceeeCCC-------CChhhHHhch-HH
Q 001022 144 GNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDD--TISNPKKDFEFDRVYGPH-------VGQAELFSDV-QP 209 (1186)
Q Consensus 144 GnIRVf~RVRPl~~~E~----~svV~~~d~~tI~v~~~~~--~~~~~~k~FtFD~VF~p~-------asQeeVFeeV-~P 209 (1186)
+||+|||||||+...|. ..++.+++ ..+.+.++.. ......+.|.||+||+++ ++|++||+.+ .|
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~-~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p 79 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPG-KVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRE 79 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECC-CEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHH
Confidence 68999999999987652 35677766 6777776542 123456899999999999 9999999985 89
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCC
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG 289 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~ 289 (1186)
+|+++++|||+||||||||||||||||+|+..++|||||++++||+.+.........|.|.+||+|||||+|+|||++..
T Consensus 80 ~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~ 159 (356)
T cd01365 80 LLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKK 159 (356)
T ss_pred HHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCc
Confidence 99999999999999999999999999999999999999999999999876665577899999999999999999998874
Q ss_pred --CCceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeecc----CCcee
Q 001022 290 --NGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI----TGENL 357 (1186)
Q Consensus 290 --~~~~~i~~~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~----tg~~~ 357 (1186)
.....++.+. ...+.+++++.|.+.+++..++..|.++|..+.|. |||||+||+|++.+.... .....
T Consensus 160 ~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~ 239 (356)
T cd01365 160 KNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEK 239 (356)
T ss_pred cCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceE
Confidence 2333444433 23467899999999999999999999999887764 899999999999987644 34567
Q ss_pred eeeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccC--------CCcccCCCCccccccccccCCCcc
Q 001022 358 YSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR--------KDIVPYENSMLTKVLADSLGESSK 429 (1186)
Q Consensus 358 ~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k--------~~hVPYRdSKLTrLLqDSLGGNSK 429 (1186)
.|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|+.+ ..|||||+||||+||+|+||||++
T Consensus 240 ~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~ 319 (356)
T cd01365 240 VSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSK 319 (356)
T ss_pred EEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCce
Confidence 899999999999999999999999999999999999999999999863 489999999999999999999999
Q ss_pred ccEEEeeCCCCCCHHHHHHHhHHHHHHhhccccc
Q 001022 430 TLMIVNICPNAANMSETLSSLNFSSRARSTVLSL 463 (1186)
Q Consensus 430 TlMIv~ISPs~~~~~ETLsTLrFAsRAR~I~~~~ 463 (1186)
|+||+||||...+++||++||+||+++++|++.+
T Consensus 320 t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~ 353 (356)
T cd01365 320 TAMIATISPADINYEETLSTLRYADRAKKIVNVA 353 (356)
T ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHHhhccCcc
Confidence 9999999999999999999999999999987654
No 13
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3e-70 Score=638.42 Aligned_cols=349 Identities=33% Similarity=0.487 Sum_probs=299.3
Q ss_pred CCCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCC---CccCCCCceeecceeeCCC-------CChhhHHhch-
Q 001022 143 KGNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGD---DTISNPKKDFEFDRVYGPH-------VGQAELFSDV- 207 (1186)
Q Consensus 143 kGnIRVf~RVRPl~~~E----~~svV~~~d~~tI~v~~~~---~~~~~~~k~FtFD~VF~p~-------asQeeVFeeV- 207 (1186)
..+|||.|||||++..| ..+++++....++.-.++. ....+.+++|.||++|++. ++|+.||..+
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 46899999999998776 3456777665555443332 1234677999999999876 4799999998
Q ss_pred HHhHhhhcCCccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCC
Q 001022 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQ 287 (1186)
Q Consensus 208 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~ 287 (1186)
.-+|+++|+|||+||||||||||||||||+|..+++|||||+++.||..|.....+...|.|.|||+|||||++||||+|
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdP 162 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDP 162 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCC
Confidence 67899999999999999999999999999999999999999999999999988888999999999999999999999999
Q ss_pred CCCC-ceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeec--cC--Cce
Q 001022 288 TGNG-LAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNL--IT--GEN 356 (1186)
Q Consensus 288 ~~~~-~~~i~~~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~--~t--g~~ 356 (1186)
.++. ..+++.+. +.++.||.+..|++++++..++..|.++|+++.|+ |||||+||.+.|.+.-. .+ ...
T Consensus 163 k~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~Sge 242 (1714)
T KOG0241|consen 163 KGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGE 242 (1714)
T ss_pred CCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchh
Confidence 7654 34455443 35677999999999999999999999999999886 89999999999987632 22 234
Q ss_pred eeeeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhcc------CCCcccCCCCccccccccccCCCccc
Q 001022 357 LYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS------RKDIVPYENSMLTKVLADSLGESSKT 430 (1186)
Q Consensus 357 ~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~------k~~hVPYRdSKLTrLLqDSLGGNSKT 430 (1186)
..|+|+|||||||||+.++++.|.|++|+.+||+||++||.||++|++ +..+||||||.||+||+|+|||||+|
T Consensus 243 KvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrT 322 (1714)
T KOG0241|consen 243 KVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRT 322 (1714)
T ss_pred heeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCcee
Confidence 579999999999999999999999999999999999999999999986 24599999999999999999999999
Q ss_pred cEEEeeCCCCCCHHHHHHHhHHHHHHhhcccccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 431 LMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEA 507 (1186)
Q Consensus 431 lMIv~ISPs~~~~~ETLsTLrFAsRAR~I~~~~~n~~~ikk~k~i~~~~~~el~~le~eI~eLkeEI~~Lr~~L~~~ 507 (1186)
+||+||||++++|+||++|||||.||+.|++. ..++ .++-..-|.+|++|++.|+..|..+
T Consensus 323 vMiatvSPaAdnyeeTlStLRYadrAkrIvN~----avvN------------edpnarvirElReEve~lr~qL~~a 383 (1714)
T KOG0241|consen 323 VMIATVSPAADNYEETLSTLRYADRAKRIVNH----AVVN------------EDPNARVIRELREEVEKLREQLEQA 383 (1714)
T ss_pred EEEEEecccccchHHHHHHHHHHHHHHHhhcc----cccc------------CCchHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999998642 1111 1133467788889999998888764
No 14
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=7.7e-69 Score=603.79 Aligned_cols=314 Identities=36% Similarity=0.543 Sum_probs=278.1
Q ss_pred CCEEEEEeeCCCCCCCC----CceEee-cCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhHhhhcCC
Q 001022 144 GNIKVFCRTRPLFEDEG----PSVVEF-TDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALDG 217 (1186)
Q Consensus 144 GnIRVf~RVRPl~~~E~----~svV~~-~d~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFee-V~PLV~svLdG 217 (1186)
.||+|+|||||+++.|. ..++.. +++.+|.+.++........+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 38999999999987663 345554 4567788877765455667899999999999999999998 59999999999
Q ss_pred ccEEEEeeccCCCCcccccccCCC---CCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCCCCceE
Q 001022 218 YNVSIFAYGQTHSGKTHTMEGSSH---DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAK 294 (1186)
Q Consensus 218 yNvcIfAYGQTGSGKTyTM~Gs~~---~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~~ 294 (1186)
||+||||||||||||||||+|+.. ++|||||++++||+.+.... ...|.|.+||+|||||+|+|||.+.......
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~--~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~ 158 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAE--NVQFLVRVSYLEIYNEEVRDLLGKDQKKKLE 158 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhcc--CccEEEEEEEEEeeCCeeeeCCCCCCCCcee
Confidence 999999999999999999999877 89999999999999887543 3789999999999999999999887644445
Q ss_pred EEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeecc---CCceeeeeeEEEe
Q 001022 295 IRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI---TGENLYSKLSLVD 365 (1186)
Q Consensus 295 i~~~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~---tg~~~~SkL~LVD 365 (1186)
++.+. ...+.+++++.|.+.+++..++..|.++|..+.+. |||||+||+|+|.+.+.. .+....|+|+|||
T Consensus 159 i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VD 238 (333)
T cd01371 159 LKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVD 238 (333)
T ss_pred EEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEE
Confidence 54433 34567999999999999999999999999887763 899999999999987653 3345679999999
Q ss_pred cCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCCC-cccCCCCccccccccccCCCccccEEEeeCCCCCCHH
Q 001022 366 LAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD-IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMS 444 (1186)
Q Consensus 366 LAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~~-hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~ 444 (1186)
||||||..+++..|.+++|+.+||+||.+|++||.+|+.++. |||||+||||+||+|+|||||+|+||+||+|...+++
T Consensus 239 LAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~ 318 (333)
T cd01371 239 LAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYD 318 (333)
T ss_pred CCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHH
Confidence 999999999999999999999999999999999999998775 9999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHhhc
Q 001022 445 ETLSSLNFSSRARST 459 (1186)
Q Consensus 445 ETLsTLrFAsRAR~I 459 (1186)
||++||+||+|||+|
T Consensus 319 eTl~TL~fa~r~r~I 333 (333)
T cd01371 319 ETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHHhhcC
Confidence 999999999999875
No 15
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1.2e-68 Score=600.06 Aligned_cols=315 Identities=45% Similarity=0.697 Sum_probs=285.7
Q ss_pred CCCEEEEEeeCCCCCCC---CCceEeecCC--cEEEEecCCCccCCCCceeecceeeCCCCChhhHHhchHHhHhhhcCC
Q 001022 143 KGNIKVFCRTRPLFEDE---GPSVVEFTDD--CTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDG 217 (1186)
Q Consensus 143 kGnIRVf~RVRPl~~~E---~~svV~~~d~--~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFeeV~PLV~svLdG 217 (1186)
+|+|+|+||+||+.+.| ...++.++++ .+|.+..+ ....+.|.||+||+++++|++||+.|.|+|+++++|
T Consensus 1 ~~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G 76 (329)
T cd01366 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKG----TGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDG 76 (329)
T ss_pred CCCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCC----CCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCC
Confidence 69999999999999886 4567777766 67777643 234589999999999999999999999999999999
Q ss_pred ccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCC--CCceEE
Q 001022 218 YNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG--NGLAKI 295 (1186)
Q Consensus 218 yNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~--~~~~~i 295 (1186)
+|+||||||+|||||||||+|+..++||+||++++||+.++.....+..|.|.+||+|||||+++|||++.. .....+
T Consensus 77 ~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i 156 (329)
T cd01366 77 YNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEI 156 (329)
T ss_pred CceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEE
Confidence 999999999999999999999999999999999999999887665578999999999999999999999863 333445
Q ss_pred Eecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccCCceeeeeeEEEecCCC
Q 001022 296 RLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGS 369 (1186)
Q Consensus 296 ~~~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLAGS 369 (1186)
+.+. ...+.+++++.|.+++++..++..|.++|....+. |||||+||+|+|.+.+...+....|+|+|||||||
T Consensus 157 ~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VDLaGs 236 (329)
T cd01366 157 KHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLAGS 236 (329)
T ss_pred EECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEECCCC
Confidence 4443 33467899999999999999999999999887663 89999999999999887777888999999999999
Q ss_pred ccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCccccEEEeeCCCCCCHHHHHHH
Q 001022 370 EGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSS 449 (1186)
Q Consensus 370 ER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~ETLsT 449 (1186)
|+..+.+..|.+++|+..||+||.+|++||.+|+.+..|||||+||||+||+|+|||+++|+||+||||...+++||++|
T Consensus 237 E~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~t 316 (329)
T cd01366 237 ERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCS 316 (329)
T ss_pred cccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhccc
Q 001022 450 LNFSSRARSTVL 461 (1186)
Q Consensus 450 LrFAsRAR~I~~ 461 (1186)
|+||+|+++|++
T Consensus 317 L~~a~~~~~i~~ 328 (329)
T cd01366 317 LRFASRVRSVEL 328 (329)
T ss_pred HHHHHHhhcccC
Confidence 999999999864
No 16
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=9.3e-69 Score=599.93 Aligned_cols=305 Identities=32% Similarity=0.526 Sum_probs=269.9
Q ss_pred CEEEEEeeCCCCCCC--CCceEeecCC-----cEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhHhhhcC
Q 001022 145 NIKVFCRTRPLFEDE--GPSVVEFTDD-----CTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALD 216 (1186)
Q Consensus 145 nIRVf~RVRPl~~~E--~~svV~~~d~-----~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFee-V~PLV~svLd 216 (1186)
||+|||||||+.+.| .+.++...++ ..+.+..+.. ....+.|.||+||+++++|++||+. +.|+|+++++
T Consensus 1 ~i~V~vRvRP~~~~e~~~~~~v~~~~~~~~~~~~v~~~~~~~--~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~ 78 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRN--RGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLS 78 (319)
T ss_pred CcEEEEEeCcCCccccCCCceEEEeCCCCCcceEEEEeCCCC--CCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 799999999998766 3455655444 3666665532 2346899999999999999999998 6999999999
Q ss_pred CccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCCCCceEEE
Q 001022 217 GYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIR 296 (1186)
Q Consensus 217 GyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~~i~ 296 (1186)
|||+||||||||||||||||+|+..++|||||++++||+.+... .+.|.|.+||+|||||+|+|||++..... .++
T Consensus 79 G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~---~~~~~v~~S~~EIy~e~v~DLL~~~~~~l-~i~ 154 (319)
T cd01376 79 GQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQ---AWTGAFSMSYYEIYNEKVYDLLEPAKKEL-PIR 154 (319)
T ss_pred CCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhc---cccceEEEEEEEEECCEeeEccCCCCCCc-eEE
Confidence 99999999999999999999999999999999999999987543 37899999999999999999998864443 344
Q ss_pred ec--ccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccCCceeeeeeEEEecCCCc
Q 001022 297 LQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSE 370 (1186)
Q Consensus 297 ~~--~~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLAGSE 370 (1186)
.. ....+.++++..|.+.+++..++..|.++|..+.+. |||||+||+|+|.+.+. .....|+|+||||||||
T Consensus 155 ~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--~~~~~s~l~~VDLAGsE 232 (319)
T cd01376 155 EDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS--NIQLEGKLNLIDLAGSE 232 (319)
T ss_pred EcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC--CceEEEEEEEEECCCCC
Confidence 33 233567999999999999999999999999887764 89999999999988754 33678999999999999
Q ss_pred cccccCCccchhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCccccEEEeeCCCCCCHHHHHHHh
Q 001022 371 GLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSL 450 (1186)
Q Consensus 371 R~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~ETLsTL 450 (1186)
|..+++..|.+++|+.+||+||++|++||.+|..+..|||||+||||+||+|+|||||+|+||+||||...+++||++||
T Consensus 233 ~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL 312 (319)
T cd01376 233 DNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTL 312 (319)
T ss_pred cccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 001022 451 NFSSRAR 457 (1186)
Q Consensus 451 rFAsRAR 457 (1186)
+||+|||
T Consensus 313 ~fa~r~~ 319 (319)
T cd01376 313 NFASRSK 319 (319)
T ss_pred HHHHhhC
Confidence 9999985
No 17
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.1e-68 Score=599.89 Aligned_cols=309 Identities=38% Similarity=0.591 Sum_probs=279.9
Q ss_pred CCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHhHhhhcCCc
Q 001022 144 GNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDGY 218 (1186)
Q Consensus 144 GnIRVf~RVRPl~~~E----~~svV~~~d~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFeeV-~PLV~svLdGy 218 (1186)
.+|+|+|||||+.+.| ...++.++++.+|.+..+. ..+.|.||+||+++++|++||+.+ .|+|+++++||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~-----~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~ 76 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSD-----DGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGY 76 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCC-----CceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 4899999999998776 4578888888888887642 358999999999999999999985 99999999999
Q ss_pred cEEEEeeccCCCCcccccccCCC---CCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCCCCceEE
Q 001022 219 NVSIFAYGQTHSGKTHTMEGSSH---DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKI 295 (1186)
Q Consensus 219 NvcIfAYGQTGSGKTyTM~Gs~~---~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~~i 295 (1186)
|+||||||||||||||||+|+.. ++||+||++++||+.+... .....|.|.+||+|||||.++|||++..... .+
T Consensus 77 n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~-~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l-~i 154 (325)
T cd01369 77 NGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSM-DENLEFHVKVSYLEIYMEKIRDLLDVSKDNL-QV 154 (325)
T ss_pred cceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhc-cCCceEEEEEEEEEEECCChhhcccCccCCc-eE
Confidence 99999999999999999999887 8999999999999988654 3456899999999999999999998865443 33
Q ss_pred Eecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccCCceeeeeeEEEecCCC
Q 001022 296 RLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGS 369 (1186)
Q Consensus 296 ~~~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLAGS 369 (1186)
+.+. ...+.+++++.|.+.+++..++..|..+|....+. |||||+||+|+|.+.+...+....|+|+|||||||
T Consensus 155 ~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLAGs 234 (325)
T cd01369 155 HEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAGS 234 (325)
T ss_pred EEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEECCCC
Confidence 3332 34567899999999999999999999999887763 89999999999999887777788999999999999
Q ss_pred ccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCC-CcccCCCCccccccccccCCCccccEEEeeCCCCCCHHHHHH
Q 001022 370 EGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK-DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLS 448 (1186)
Q Consensus 370 ER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~-~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~ETLs 448 (1186)
||..+++.+|.+++|+..||+||++|++||.+|++++ .|||||+||||+||+|+|||+|+|+||+||||...+++||++
T Consensus 235 E~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~ 314 (325)
T cd01369 235 EKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLS 314 (325)
T ss_pred CcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHH
Confidence 9999999999999999999999999999999999977 999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHhhc
Q 001022 449 SLNFSSRARST 459 (1186)
Q Consensus 449 TLrFAsRAR~I 459 (1186)
||+||+||++|
T Consensus 315 TL~~a~r~~~i 325 (325)
T cd01369 315 TLRFGARAKTI 325 (325)
T ss_pred HHHHHHHhhcC
Confidence 99999999875
No 18
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.8e-68 Score=597.57 Aligned_cols=306 Identities=34% Similarity=0.531 Sum_probs=274.6
Q ss_pred CEEEEEeeCCCCCCC---CCceEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHhHhhhcCCccE
Q 001022 145 NIKVFCRTRPLFEDE---GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDGYNV 220 (1186)
Q Consensus 145 nIRVf~RVRPl~~~E---~~svV~~~d~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFeeV-~PLV~svLdGyNv 220 (1186)
||+|+||+||+...| ..+++.+.++.+|.+..+ ...+.|.||+||+++++|++||+.+ .|+|+++++|||+
T Consensus 1 ~V~V~vRvRP~~~~e~~~~~~~~~~~~~~~v~~~~~-----~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~ 75 (321)
T cd01374 1 KIKVSVRVRPLNPRESDNEQVAWSIDNDNTISLEES-----TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNG 75 (321)
T ss_pred CeEEEEEcCcCCcccccCCcceEEECCCCEEEEcCC-----CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCce
Confidence 799999999998875 356777777767777654 3458999999999999999999985 8999999999999
Q ss_pred EEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCCCCceEEEecc-
Q 001022 221 SIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQS- 299 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~~i~~~~- 299 (1186)
||||||||||||||||+|+..++|||||++++||+.+.... ...|.|.+||+|||||+|+|||++.... ..+..+.
T Consensus 76 ~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~--~~~~~v~~S~~Eiy~e~v~DLL~~~~~~-l~i~~~~~ 152 (321)
T cd01374 76 TIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTP--DREFLLRVSYLEIYNEKIKDLLSPSPQE-LRIREDPN 152 (321)
T ss_pred eEEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhccc--CceEEEEEEEEEEEcCEeEEccCCCCCC-ceEEECCC
Confidence 99999999999999999999999999999999999886543 5689999999999999999999987643 3344332
Q ss_pred -cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccC---CceeeeeeEEEecCCCcc
Q 001022 300 -LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT---GENLYSKLSLVDLAGSEG 371 (1186)
Q Consensus 300 -~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~t---g~~~~SkL~LVDLAGSER 371 (1186)
...+.+++++.|.+++++..++..|.++|..+.|. |||||+||+|+|.+.+... +....|+|+|||||||||
T Consensus 153 ~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~ 232 (321)
T cd01374 153 KGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSER 232 (321)
T ss_pred CCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCc
Confidence 34567899999999999999999999999887664 8999999999999887654 556789999999999999
Q ss_pred ccccCCccchhHHHHHhhhhhHHHHHHHHhhccCC--CcccCCCCccccccccccCCCccccEEEeeCCCCCCHHHHHHH
Q 001022 372 LIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK--DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSS 449 (1186)
Q Consensus 372 ~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~--~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~ETLsT 449 (1186)
..+.+ .|.+++|+.+||+||++|++||.+|+.++ .|||||+||||+||+|+|||||+|+||+||||...+++||++|
T Consensus 233 ~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~T 311 (321)
T cd01374 233 ASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNT 311 (321)
T ss_pred cccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHH
Confidence 99988 99999999999999999999999999985 9999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhc
Q 001022 450 LNFSSRARST 459 (1186)
Q Consensus 450 LrFAsRAR~I 459 (1186)
|+||+|+++|
T Consensus 312 L~~a~r~~~i 321 (321)
T cd01374 312 LKFASRAKKV 321 (321)
T ss_pred HHHHHHHhcC
Confidence 9999999875
No 19
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=3.8e-68 Score=601.75 Aligned_cols=316 Identities=35% Similarity=0.498 Sum_probs=276.6
Q ss_pred CCEEEEEeeCCCCCCCC----CceEeecCC-cEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhHhhhcCC
Q 001022 144 GNIKVFCRTRPLFEDEG----PSVVEFTDD-CTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALDG 217 (1186)
Q Consensus 144 GnIRVf~RVRPl~~~E~----~svV~~~d~-~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFee-V~PLV~svLdG 217 (1186)
+||+|+|||||+.+.|. ..++..+++ .+|.+.++.. .....+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~-~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA-DKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCc-ccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 59999999999987663 356777655 5676665432 23456899999999999999999998 59999999999
Q ss_pred ccEEEEeeccCCCCcccccccCC-----------CCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCC
Q 001022 218 YNVSIFAYGQTHSGKTHTMEGSS-----------HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLP 286 (1186)
Q Consensus 218 yNvcIfAYGQTGSGKTyTM~Gs~-----------~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~ 286 (1186)
||+||||||||||||||||+|+. +++|||||++++||+.+... ...|.|++||+|||||+|+|||+
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~---~~~~~v~~S~~EIy~e~v~DLL~ 157 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ---NTEYSVKVSYLELYNEELFDLLS 157 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc---cceeEEEEEEEEeeCCeeeeCCC
Confidence 99999999999999999999974 34899999999999988653 56899999999999999999998
Q ss_pred CCC--CCceEEEec----ccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccC---
Q 001022 287 QTG--NGLAKIRLQ----SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT--- 353 (1186)
Q Consensus 287 ~~~--~~~~~i~~~----~~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~t--- 353 (1186)
+.. .....+..+ ....+.+++++.|.+.+++..++..|.++|..+.|. |||||+||+|++.+.....
T Consensus 158 ~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~ 237 (352)
T cd01364 158 SESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGE 237 (352)
T ss_pred CccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCC
Confidence 874 333344443 233567899999999999999999999999887764 8999999999998865432
Q ss_pred CceeeeeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCccccEE
Q 001022 354 GENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMI 433 (1186)
Q Consensus 354 g~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~~hVPYRdSKLTrLLqDSLGGNSKTlMI 433 (1186)
.....|+|+|||||||||..+.++.+.+++|+..||+||++|++||.+|+.+..|||||+||||+||+|+|||||+|+||
T Consensus 238 ~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I 317 (352)
T cd01364 238 ELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSII 317 (352)
T ss_pred ccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEE
Confidence 22357999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCHHHHHHHhHHHHHHhhccccc
Q 001022 434 VNICPNAANMSETLSSLNFSSRARSTVLSL 463 (1186)
Q Consensus 434 v~ISPs~~~~~ETLsTLrFAsRAR~I~~~~ 463 (1186)
+||||...+++||++||+||+|+++|++.|
T Consensus 318 ~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P 347 (352)
T cd01364 318 ATISPASINLEETLSTLEYAHRAKNIKNKP 347 (352)
T ss_pred EEeCCCcccHHHHHHHHHHHHHHhhccCcc
Confidence 999999999999999999999999987655
No 20
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=2.2e-67 Score=592.43 Aligned_cols=310 Identities=37% Similarity=0.491 Sum_probs=272.5
Q ss_pred CEEEEEeeCCCCCCCCCceEeecCCcEEEEecCCCccC------CCCceeecceeeCCCCChhhHHhch-HHhHhhhcCC
Q 001022 145 NIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTIS------NPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDG 217 (1186)
Q Consensus 145 nIRVf~RVRPl~~~E~~svV~~~d~~tI~v~~~~~~~~------~~~k~FtFD~VF~p~asQeeVFeeV-~PLV~svLdG 217 (1186)
.|+|+||+||+...+...+...+++..+.+..+..... ...+.|.||+||++ ++|++||+.+ .|+|+++++|
T Consensus 1 ~i~V~vRvRP~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G 79 (334)
T cd01375 1 TIQVFVRVRPTPTKQGSSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSALDG 79 (334)
T ss_pred CeEEEEECCCCCCCCCccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHHhCC
Confidence 48999999999987766666667777777776644322 23468999999999 9999999986 8999999999
Q ss_pred ccEEEEeeccCCCCcccccccCC---CCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCCC----
Q 001022 218 YNVSIFAYGQTHSGKTHTMEGSS---HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN---- 290 (1186)
Q Consensus 218 yNvcIfAYGQTGSGKTyTM~Gs~---~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~---- 290 (1186)
||+||||||||||||||||+|+. .++|||||++++||+.++.. .+..|.|++||+|||||+|+|||++...
T Consensus 80 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~--~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~~ 157 (334)
T cd01375 80 YNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMR--ATKTYTVHVSYLEIYNEQLYDLLGDTPEALES 157 (334)
T ss_pred CccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhc--cCcceEEEEEEEEEECCEeecCCCCCcccccc
Confidence 99999999999999999999976 47899999999999998653 3567999999999999999999988742
Q ss_pred -CceEEEec--ccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEe--eccCCceeeeee
Q 001022 291 -GLAKIRLQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYN--NLITGENLYSKL 361 (1186)
Q Consensus 291 -~~~~i~~~--~~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~--n~~tg~~~~SkL 361 (1186)
....++.+ ....+.+++++.|.+++++..++..|..+|....+. |||||+||+|+|.+. .........|+|
T Consensus 158 ~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~l 237 (334)
T cd01375 158 LPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSKL 237 (334)
T ss_pred CCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEEEE
Confidence 22334433 234567899999999999999999999999887664 899999999999987 334445678999
Q ss_pred EEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCC-CcccCCCCccccccccccCCCccccEEEeeCCCC
Q 001022 362 SLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK-DIVPYENSMLTKVLADSLGESSKTLMIVNICPNA 440 (1186)
Q Consensus 362 ~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~-~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~ 440 (1186)
+|||||||||..+++..|..++|+.+||+||++|++||.+|+.++ .||||||||||+||+|+|||||+|+||+||||..
T Consensus 238 ~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~ 317 (334)
T cd01375 238 NLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEP 317 (334)
T ss_pred EEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCch
Confidence 999999999999999999999999999999999999999999988 9999999999999999999999999999999999
Q ss_pred CCHHHHHHHhHHHHHHh
Q 001022 441 ANMSETLSSLNFSSRAR 457 (1186)
Q Consensus 441 ~~~~ETLsTLrFAsRAR 457 (1186)
.++.||++||+||+|++
T Consensus 318 ~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 318 SNLDETLSTLRFAQRVA 334 (334)
T ss_pred hhHHHHHHHHHHHHhcC
Confidence 99999999999999984
No 21
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=4.8e-67 Score=589.80 Aligned_cols=307 Identities=34% Similarity=0.536 Sum_probs=268.7
Q ss_pred CEEEEEeeCCCCCCCCC----ceEeecC-CcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHhHhhhcCCc
Q 001022 145 NIKVFCRTRPLFEDEGP----SVVEFTD-DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDGY 218 (1186)
Q Consensus 145 nIRVf~RVRPl~~~E~~----svV~~~d-~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFeeV-~PLV~svLdGy 218 (1186)
+|+|+||+||+.+.|.. .++.+.+ +..+.+.+ .+.|.||+||+++++|++||+.+ .|+|+++++||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~--------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~ 73 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT--------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGY 73 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC--------CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 69999999999877632 3444432 33443322 47899999999999999999985 89999999999
Q ss_pred cEEEEeeccCCCCcccccccCC------CCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCC--C
Q 001022 219 NVSIFAYGQTHSGKTHTMEGSS------HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG--N 290 (1186)
Q Consensus 219 NvcIfAYGQTGSGKTyTM~Gs~------~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~--~ 290 (1186)
|+||||||||||||||||+|+. .++|||||++++||+.++... ...+|.|.|||+|||||+|+|||.+.. .
T Consensus 74 n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~-~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~ 152 (341)
T cd01372 74 NATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKK-DEPDFQLKVSFLELYNEEVRDLLSPSTSEK 152 (341)
T ss_pred ccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhcc-ccceEEEEEEEEEeECCeeecCCCCcccCC
Confidence 9999999999999999999974 579999999999999987543 357899999999999999999998874 3
Q ss_pred CceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeecc----------CC
Q 001022 291 GLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI----------TG 354 (1186)
Q Consensus 291 ~~~~i~~~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~----------tg 354 (1186)
....++.+. ...+.+++++.|.+.+++..++..|..+|....+. |||||+||+|+|.+.+.. ..
T Consensus 153 ~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~ 232 (341)
T cd01372 153 SPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKN 232 (341)
T ss_pred CCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCC
Confidence 344555443 33567899999999999999999999999887764 899999999999988763 34
Q ss_pred ceeeeeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCC---CcccCCCCccccccccccCCCcccc
Q 001022 355 ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTL 431 (1186)
Q Consensus 355 ~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~---~hVPYRdSKLTrLLqDSLGGNSKTl 431 (1186)
....|+|+||||||||+..+++..|.+++|+..||+||.+|++||.+|+.++ .|||||+||||+||+|+||||++|+
T Consensus 233 ~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~ 312 (341)
T cd01372 233 STLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTL 312 (341)
T ss_pred ceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEE
Confidence 4678999999999999999999999999999999999999999999999866 7999999999999999999999999
Q ss_pred EEEeeCCCCCCHHHHHHHhHHHHHHhhcc
Q 001022 432 MIVNICPNAANMSETLSSLNFSSRARSTV 460 (1186)
Q Consensus 432 MIv~ISPs~~~~~ETLsTLrFAsRAR~I~ 460 (1186)
||+||||...+++||++||+||+|+++|+
T Consensus 313 ~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 313 MIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999874
No 22
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=2.4e-65 Score=571.66 Aligned_cols=312 Identities=38% Similarity=0.585 Sum_probs=282.8
Q ss_pred CEEEEEeeCCCCCCC---CCceEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHhHhhhcCCccE
Q 001022 145 NIKVFCRTRPLFEDE---GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDGYNV 220 (1186)
Q Consensus 145 nIRVf~RVRPl~~~E---~~svV~~~d~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFeeV-~PLV~svLdGyNv 220 (1186)
+|+||||+||+...| .+.++.+.++++|.+.++........+.|.||+||+++++|++||+.+ .|+|+++++|+|+
T Consensus 1 ~i~V~vRvrP~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~ 80 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNG 80 (328)
T ss_pred CeEEEEEcCCCCcccccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 699999999998764 678899988889999887654556679999999999999999999985 7999999999999
Q ss_pred EEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCC--CCCceEEEec
Q 001022 221 SIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQT--GNGLAKIRLQ 298 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~--~~~~~~i~~~ 298 (1186)
|||+||+|||||||||+|+..++|||||++++||+.+.........|.|.+||+|||||+|+|||.+. ... ..++.+
T Consensus 81 ~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~-l~i~~~ 159 (328)
T cd00106 81 TIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKP-LSLRED 159 (328)
T ss_pred eEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCC-cEEEEc
Confidence 99999999999999999999999999999999999987654446789999999999999999999986 333 344443
Q ss_pred c--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccCCc--eeeeeeEEEecCCCc
Q 001022 299 S--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGE--NLYSKLSLVDLAGSE 370 (1186)
Q Consensus 299 ~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~tg~--~~~SkL~LVDLAGSE 370 (1186)
. ...+.+++++.|.+.+++..++..|..+|....+. |||||+||+|+|.+.+..... ...|+|+||||||||
T Consensus 160 ~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLaGse 239 (328)
T cd00106 160 PKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSE 239 (328)
T ss_pred CCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECCCCC
Confidence 3 34577899999999999999999999999887664 799999999999998876554 778999999999999
Q ss_pred cccccCCccchhHHHHHhhhhhHHHHHHHHhhccCC--CcccCCCCccccccccccCCCccccEEEeeCCCCCCHHHHHH
Q 001022 371 GLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK--DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLS 448 (1186)
Q Consensus 371 R~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~--~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~ETLs 448 (1186)
+..+.+..+.+++|+..||+||.+|++||.+|+.+. .|||||+||||+||+|+|+|+++|+||+||+|...+++||++
T Consensus 240 ~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~ 319 (328)
T cd00106 240 RAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLS 319 (328)
T ss_pred cccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHH
Confidence 999999999999999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHh
Q 001022 449 SLNFSSRAR 457 (1186)
Q Consensus 449 TLrFAsRAR 457 (1186)
||+||+|++
T Consensus 320 tL~~a~r~~ 328 (328)
T cd00106 320 TLRFASRAK 328 (328)
T ss_pred HHHHHHhcC
Confidence 999999985
No 23
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.8e-65 Score=596.76 Aligned_cols=322 Identities=29% Similarity=0.449 Sum_probs=281.3
Q ss_pred cCCCCEEEEEeeCCCC-CCCCCceEeecCCcEEEEecCCCcc-------CCCCceeecceeeCCCCChhhHHhch-HHhH
Q 001022 141 TAKGNIKVFCRTRPLF-EDEGPSVVEFTDDCTIRVNTGDDTI-------SNPKKDFEFDRVYGPHVGQAELFSDV-QPFV 211 (1186)
Q Consensus 141 elkGnIRVf~RVRPl~-~~E~~svV~~~d~~tI~v~~~~~~~-------~~~~k~FtFD~VF~p~asQeeVFeeV-~PLV 211 (1186)
+.+..|.||||+||+. ..+...++.+.++.+|.+..|.... ....+.|.|.+||+|+++|.+||+.+ .|+|
T Consensus 28 ~~~d~v~v~~rvrP~~~~~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~plV 107 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSDASEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPLV 107 (809)
T ss_pred hhhcchheeEeecCCCCCccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHHHH
Confidence 5678899999999998 5566788888899999988764322 22347899999999999999999975 8999
Q ss_pred hhhcCCccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhcc--------------------------------
Q 001022 212 QSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNS-------------------------------- 259 (1186)
Q Consensus 212 ~svLdGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~-------------------------------- 259 (1186)
.+++.|.|..+|+||.|||||||||+|++.++||+||+++.||+.++.
T Consensus 108 ~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~ 187 (809)
T KOG0247|consen 108 KDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKREA 187 (809)
T ss_pred HHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999954430
Q ss_pred ---C----------------------------cccccccceeEEEEEEecccccccCCCCCCCc-----eEEEe--cccc
Q 001022 260 ---D----------------------------TTATARFNFAVTVFELYNEQLRELLPQTGNGL-----AKIRL--QSLE 301 (1186)
Q Consensus 260 ---~----------------------------~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~-----~~i~~--~~~~ 301 (1186)
+ -..+..|.|+|||+|||||-|||||.+.+... ..++. ....
T Consensus 188 ~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~~~ 267 (809)
T KOG0247|consen 188 MLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTNGNM 267 (809)
T ss_pred ccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccCCCe
Confidence 0 01345689999999999999999998764321 11222 2345
Q ss_pred cceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeecc--CCceeeeeeEEEecCCCcccccc
Q 001022 302 SSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI--TGENLYSKLSLVDLAGSEGLIAE 375 (1186)
Q Consensus 302 ~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~--tg~~~~SkL~LVDLAGSER~~ks 375 (1186)
++.|++.+.|.+.+|++++|..|.++|+.++|+ |||||+||+|.+.+.... .+....|.|.|||||||||..++
T Consensus 268 ~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSERt~rt 347 (809)
T KOG0247|consen 268 YVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSERTNRT 347 (809)
T ss_pred eeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccchhcccc
Confidence 678999999999999999999999999999885 999999999999887655 45567899999999999999999
Q ss_pred CCccchhHHHHHhhhhhHHHHHHHHhhccC-----CCcccCCCCccccccccccCCCccccEEEeeCCCCCCHHHHHHHh
Q 001022 376 DDSGERITDVLHVMKSLSALGDVLSSLTSR-----KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSL 450 (1186)
Q Consensus 376 ~a~G~RLkEa~~INkSLsALg~VIsALa~k-----~~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~ETLsTL 450 (1186)
+++|.||+||++||.||++||.||.+|..+ +.+|||||||||++++++|.|..+.+||+||+|.+.+|+|+++.|
T Consensus 348 q~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vl 427 (809)
T KOG0247|consen 348 QNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVL 427 (809)
T ss_pred cchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHH
Confidence 999999999999999999999999999863 369999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccc
Q 001022 451 NFSSRARSTVLS 462 (1186)
Q Consensus 451 rFAsRAR~I~~~ 462 (1186)
+||.-+..|.+.
T Consensus 428 kFaeiaq~v~v~ 439 (809)
T KOG0247|consen 428 KFAEIAQEVEVA 439 (809)
T ss_pred HHHHhccccccc
Confidence 999999998753
No 24
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=6e-64 Score=562.76 Aligned_cols=316 Identities=39% Similarity=0.587 Sum_probs=279.7
Q ss_pred CEEEEEeeCCCCCCC----CCceEeecCCc--EEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHhHhhhcCC
Q 001022 145 NIKVFCRTRPLFEDE----GPSVVEFTDDC--TIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALDG 217 (1186)
Q Consensus 145 nIRVf~RVRPl~~~E----~~svV~~~d~~--tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFeeV-~PLV~svLdG 217 (1186)
+|+|+|||||+...| .++++.+.++. +|.+..+. .....+.|.||+||+++++|++||+.+ .|+|+++++|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G 78 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPK--NRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEG 78 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCC--CCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcC
Confidence 699999999998776 34677776554 66665442 334568999999999999999999985 8999999999
Q ss_pred ccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCCCCceEEEe
Q 001022 218 YNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL 297 (1186)
Q Consensus 218 yNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~~i~~ 297 (1186)
+|+|||+||+|||||||||+|+.+++||+||++++||+.+.... ....|.|++||+|||||+++|||++.... ..++.
T Consensus 79 ~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~-~~~~~~v~~S~~ei~~e~v~DLL~~~~~~-l~i~~ 156 (335)
T smart00129 79 YNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLE-EGWQFQVKVSYLEIYNEKIRDLLNPSPKK-LEIRE 156 (335)
T ss_pred CceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcc-cCceEEEEEEEEEEECCEEEECcCCCCCC-cEEEE
Confidence 99999999999999999999999999999999999999886543 36789999999999999999999877543 34444
Q ss_pred cc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEe--eccCCceeeeeeEEEecCCC
Q 001022 298 QS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYN--NLITGENLYSKLSLVDLAGS 369 (1186)
Q Consensus 298 ~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~--n~~tg~~~~SkL~LVDLAGS 369 (1186)
+. ...+.+++++.|.+++++..++..|..+|....+. |||||+||+|+|.+. +...+....|+|+|||||||
T Consensus 157 ~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGs 236 (335)
T smart00129 157 DKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGS 236 (335)
T ss_pred CCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCC
Confidence 33 34567899999999999999999999999877664 899999999999966 55566678899999999999
Q ss_pred ccccccCCccchhHHHHHhhhhhHHHHHHHHhhcc--CCCcccCCCCccccccccccCCCccccEEEeeCCCCCCHHHHH
Q 001022 370 EGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS--RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETL 447 (1186)
Q Consensus 370 ER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~--k~~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~ETL 447 (1186)
||..+.+..|.+++|+..||+||.+|++||.+|++ +..|||||+|+||+||+++|+|+++|+||+||||...+++||+
T Consensus 237 e~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl 316 (335)
T smart00129 237 ERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETL 316 (335)
T ss_pred CccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHH
Confidence 99999999999999999999999999999999998 6779999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHhhcccccC
Q 001022 448 SSLNFSSRARSTVLSLG 464 (1186)
Q Consensus 448 sTLrFAsRAR~I~~~~~ 464 (1186)
+||+||+++++|++.|.
T Consensus 317 ~tL~~a~~~~~i~~~p~ 333 (335)
T smart00129 317 STLRFASRAKEIKNKAI 333 (335)
T ss_pred HHHHHHHHHhhcccCCC
Confidence 99999999999987653
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=7e-64 Score=561.32 Aligned_cols=309 Identities=39% Similarity=0.571 Sum_probs=261.6
Q ss_pred eeCCCCCCCCC----ceEeecC-CcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhHhhhcCCccEEEEe
Q 001022 151 RTRPLFEDEGP----SVVEFTD-DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALDGYNVSIFA 224 (1186)
Q Consensus 151 RVRPl~~~E~~----svV~~~d-~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFee-V~PLV~svLdGyNvcIfA 224 (1186)
||||+++.|.. ..+...+ .................+.|.||+||+++++|++||+. +.|+|+++++|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 89999866521 2222221 11111122222333456899999999999999999998 599999999999999999
Q ss_pred eccCCCCcccccccC--CCCCCcHHHHHHHHHHhhccCccc-ccccceeEEEEEEecccccccCCCCC---CCceEEEec
Q 001022 225 YGQTHSGKTHTMEGS--SHDRGLYARCFEELFDLSNSDTTA-TARFNFAVTVFELYNEQLRELLPQTG---NGLAKIRLQ 298 (1186)
Q Consensus 225 YGQTGSGKTyTM~Gs--~~~~GIIPRaledLF~~i~~~~~~-~~~y~V~VS~lEIYNE~V~DLL~~~~---~~~~~i~~~ 298 (1186)
||+|||||||||+|+ ..++||+||++++||+.+...... ...|.|+|||+|||||+|+|||++.. .....++.+
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~ 160 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRED 160 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeec
Confidence 999999999999999 899999999999999988754432 46899999999999999999999874 233455554
Q ss_pred cc---ccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccCCc----eeeeeeEEEecC
Q 001022 299 SL---ESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGE----NLYSKLSLVDLA 367 (1186)
Q Consensus 299 ~~---~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~tg~----~~~SkL~LVDLA 367 (1186)
.. ..+.+++++.|.+.+++..++..|.++|....+. |||||+||+|+|.+.+..... ...|+|+|||||
T Consensus 161 ~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLa 240 (335)
T PF00225_consen 161 SNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLA 240 (335)
T ss_dssp TTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEE
T ss_pred cccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeecc
Confidence 43 4567899999999999999999999999888775 899999999999998876554 478999999999
Q ss_pred CCccccccCCc-cchhHHHHHhhhhhHHHHHHHHhhccC--CCcccCCCCccccccccccCCCccccEEEeeCCCCCCHH
Q 001022 368 GSEGLIAEDDS-GERITDVLHVMKSLSALGDVLSSLTSR--KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMS 444 (1186)
Q Consensus 368 GSER~~ks~a~-G~RLkEa~~INkSLsALg~VIsALa~k--~~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~ 444 (1186)
||||..+.+.. +.+++|+..||+||.+|++||.+|+.+ ..|||||+||||+||+|+|||||+|+||+||||...+++
T Consensus 241 GsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~ 320 (335)
T PF00225_consen 241 GSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYE 320 (335)
T ss_dssp ESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHH
T ss_pred cccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHH
Confidence 99999988864 888999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHhhc
Q 001022 445 ETLSSLNFSSRARST 459 (1186)
Q Consensus 445 ETLsTLrFAsRAR~I 459 (1186)
||++||+||+++++|
T Consensus 321 eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 321 ETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999975
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-60 Score=542.93 Aligned_cols=315 Identities=26% Similarity=0.379 Sum_probs=273.1
Q ss_pred CCEEEEEeeCCCCCCCC----CceEeecCCcEEEEecCCCccC----CCCceeecceeeCCCCChhhHHhc-hHHhHhhh
Q 001022 144 GNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDDTIS----NPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSA 214 (1186)
Q Consensus 144 GnIRVf~RVRPl~~~E~----~svV~~~d~~tI~v~~~~~~~~----~~~k~FtFD~VF~p~asQeeVFee-V~PLV~sv 214 (1186)
..|.|+||-||++..|. ..+|.+|..+.+.|+-+...+. -.++.|.||++|++.++++.||.. ++|||..+
T Consensus 208 hrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~I 287 (676)
T KOG0246|consen 208 HRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTI 287 (676)
T ss_pred ceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHH
Confidence 46999999999998773 3578888888888876643222 135899999999999999999996 59999999
Q ss_pred cCCccEEEEeeccCCCCcccccccCCC------CCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCC
Q 001022 215 LDGYNVSIFAYGQTHSGKTHTMEGSSH------DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQT 288 (1186)
Q Consensus 215 LdGyNvcIfAYGQTGSGKTyTM~Gs~~------~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~ 288 (1186)
|+|--+|+||||||||||||||.|+-. ..||..++.+++|..+....-....+.|++||||||+.++||||+..
T Consensus 288 F~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~k 367 (676)
T KOG0246|consen 288 FEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLNDK 367 (676)
T ss_pred HhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhccc
Confidence 999999999999999999999988532 36999999999999887544456689999999999999999999874
Q ss_pred CCCceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCC----CCceeEEEEEEEEEEeeccCCceeeeeeE
Q 001022 289 GNGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVS----KFNVSHLIIMIHIYYNNLITGENLYSKLS 362 (1186)
Q Consensus 289 ~~~~~~i~~~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T----~SSRSH~IftI~V~~~n~~tg~~~~SkL~ 362 (1186)
.. ..+..+. ...++|+.+..|.+.++++++++.|...|+.+.| +|||||+||+|.+.... +....|+++
T Consensus 368 ~K--LrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~---~~k~hGKfS 442 (676)
T KOG0246|consen 368 KK--LRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG---EFKLHGKFS 442 (676)
T ss_pred cc--eEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC---cceeEeEEE
Confidence 32 2333332 3468899999999999999999999999987765 49999999999997643 246789999
Q ss_pred EEecCCCccccc-cCCccchhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCC-CccccEEEeeCCCC
Q 001022 363 LVDLAGSEGLIA-EDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGE-SSKTLMIVNICPNA 440 (1186)
Q Consensus 363 LVDLAGSER~~k-s~a~G~RLkEa~~INkSLsALg~VIsALa~k~~hVPYRdSKLTrLLqDSLGG-NSKTlMIv~ISPs~ 440 (1186)
||||||+||... +.++.++..|+..||+||+||..||.||..++.|+|||.||||++|+|||=| ||+|+||+||||+.
T Consensus 443 lIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~ 522 (676)
T KOG0246|consen 443 LIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGI 522 (676)
T ss_pred EEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCc
Confidence 999999999654 4567788899999999999999999999999999999999999999999988 99999999999999
Q ss_pred CCHHHHHHHhHHHHHHhhccccc
Q 001022 441 ANMSETLSSLNFSSRARSTVLSL 463 (1186)
Q Consensus 441 ~~~~ETLsTLrFAsRAR~I~~~~ 463 (1186)
.+.+.||+|||||.|+++...+.
T Consensus 523 ~ScEhTLNTLRYAdRVKeLsv~~ 545 (676)
T KOG0246|consen 523 SSCEHTLNTLRYADRVKELSVDG 545 (676)
T ss_pred chhhhhHHHHHHHHHHHhhcCCC
Confidence 99999999999999999976543
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.9e-58 Score=551.16 Aligned_cols=302 Identities=32% Similarity=0.461 Sum_probs=258.0
Q ss_pred eCCCCCCCC----CceEee-cCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhHhhhcCCccEEEEee
Q 001022 152 TRPLFEDEG----PSVVEF-TDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALDGYNVSIFAY 225 (1186)
Q Consensus 152 VRPl~~~E~----~svV~~-~d~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFee-V~PLV~svLdGyNvcIfAY 225 (1186)
|||+...|. +.|+++ +....|.+ +....|+||+||....+|.++|+. |.|+++.+|+|||++++||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~i--------g~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlay 72 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAI--------GKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAY 72 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceee--------cCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeee
Confidence 689876542 234442 33334443 335789999999999999999997 6999999999999999999
Q ss_pred ccCCCCcccccccC----CCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCCCCceEEEecc--
Q 001022 226 GQTHSGKTHTMEGS----SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQS-- 299 (1186)
Q Consensus 226 GQTGSGKTyTM~Gs----~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~~i~~~~-- 299 (1186)
|||||||||||.+. .++.|||||++.++|..+.... ...|.|.|+|+||||+.|+|||.+..... .+....
T Consensus 73 gQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~--~~~f~i~vs~vely~e~v~dl~~~~~~~~-~i~~~e~~ 149 (913)
T KOG0244|consen 73 GQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTE--SFVFRITVSFVELYNEEVLDLLKPSRLKA-NIKLREPK 149 (913)
T ss_pred cccCCCceeecccccccccccCCcCcchHHHHHHHHHhhh--ccceeeeeeeeeccchhhhhhcChhhhhh-ceeccccC
Confidence 99999999999876 2345999999999999987543 37899999999999999999998544322 133322
Q ss_pred -cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeec-cCCceeeeeeEEEecCCCcccc
Q 001022 300 -LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNL-ITGENLYSKLSLVDLAGSEGLI 373 (1186)
Q Consensus 300 -~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~-~tg~~~~SkL~LVDLAGSER~~ 373 (1186)
...+.++++..|....+....|..|...|++++|. |||||+||++++.+... ......++||+|||||||||.+
T Consensus 150 g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~k 229 (913)
T KOG0244|consen 150 GEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVK 229 (913)
T ss_pred CceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeecccccccc
Confidence 24567899999999999999999999999988774 89999999999987533 3333567999999999999999
Q ss_pred ccCCccchhHHHHHhhhhhHHHHHHHHhhccCCC--cccCCCCccccccccccCCCccccEEEeeCCCCCCHHHHHHHhH
Q 001022 374 AEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD--IVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLN 451 (1186)
Q Consensus 374 ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~~--hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~ETLsTLr 451 (1186)
+++++|+|++|+.+||.+|++||+||++|...+. |||||+||||+||||+||||+.|+||+||||+..++.||++||+
T Consensus 230 kT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ 309 (913)
T KOG0244|consen 230 KTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLR 309 (913)
T ss_pred ccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHH
Confidence 9999999999999999999999999999998655 99999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccC
Q 001022 452 FSSRARSTVLSLG 464 (1186)
Q Consensus 452 FAsRAR~I~~~~~ 464 (1186)
||.||++|++.+.
T Consensus 310 ya~Rak~iknk~v 322 (913)
T KOG0244|consen 310 YADRAKQIKNKPV 322 (913)
T ss_pred HhhHHHHhccccc
Confidence 9999999987653
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5e-55 Score=521.54 Aligned_cols=315 Identities=31% Similarity=0.506 Sum_probs=270.0
Q ss_pred CCCCEEEEEeeCCCCCCCCCceEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhHhhhcCCccE
Q 001022 142 AKGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSALDGYNV 220 (1186)
Q Consensus 142 lkGnIRVf~RVRPl~~~E~~svV~~~d~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFee-V~PLV~svLdGyNv 220 (1186)
.-.+++++++..|-..++ ..+...+...+..... ....|.||+||++.++|++||+. +.|+++++++|||+
T Consensus 20 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~ 91 (568)
T COG5059 20 SVSDIKSTIRIIPGELGE--RLINTSKKSHVSLEKS------KEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNC 91 (568)
T ss_pred eecCceEEEeecCCCcch--heeecccccccccccc------cceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccc
Confidence 346778888888843332 1222222222222211 14679999999999999999997 69999999999999
Q ss_pred EEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCCCCceEEEe--c
Q 001022 221 SIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRL--Q 298 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~~i~~--~ 298 (1186)
||||||||||||||||.|..+++||||+++.+||+.+..... +..|.|.+||+|||||+++|||.+.... ..++. .
T Consensus 92 TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~-~~~~~v~is~lEiYnEk~~DLl~~~~~~-~~~~~~~~ 169 (568)
T COG5059 92 TVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSM-TKDFAVSISYLEIYNEKIYDLLSPNEES-LNIREDSL 169 (568)
T ss_pred eEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhccc-CcceeeEeehhHHHhhHHHhhccCcccc-ccccccCC
Confidence 999999999999999999999999999999999998875443 6789999999999999999999887654 12222 2
Q ss_pred ccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccCCceeeeeeEEEecCCCccccc
Q 001022 299 SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIA 374 (1186)
Q Consensus 299 ~~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLAGSER~~k 374 (1186)
....+.+++...+.+.++++.+|+.|..+|..+.+. |||||+||++++.+.+...+....++|+||||||||++..
T Consensus 170 ~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~ 249 (568)
T COG5059 170 LGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAAR 249 (568)
T ss_pred CceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccceecceEEEEeeccccccch
Confidence 233456789999999999999999999999988874 8999999999999988777766668999999999999999
Q ss_pred cCCccchhHHHHHhhhhhHHHHHHHHhhcc--CCCcccCCCCccccccccccCCCccccEEEeeCCCCCCHHHHHHHhHH
Q 001022 375 EDDSGERITDVLHVMKSLSALGDVLSSLTS--RKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNF 452 (1186)
Q Consensus 375 s~a~G~RLkEa~~INkSLsALg~VIsALa~--k~~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~ETLsTLrF 452 (1186)
++..+.|++|+..||+||.+||+||.+|.. +..|||||+||||||||++|||+++|+|||||+|...+++||.+||+|
T Consensus 250 ~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~ 329 (568)
T COG5059 250 TGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKF 329 (568)
T ss_pred hhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHH
Confidence 999999999999999999999999999997 788999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccCcc
Q 001022 453 SSRARSTVLSLGNR 466 (1186)
Q Consensus 453 AsRAR~I~~~~~n~ 466 (1186)
|+||++|...+...
T Consensus 330 a~rak~I~~~~~~~ 343 (568)
T COG5059 330 ASRAKSIKNKIQVN 343 (568)
T ss_pred HHHHhhcCCccccc
Confidence 99999998765443
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=1.1e-46 Score=392.11 Aligned_cols=172 Identities=44% Similarity=0.657 Sum_probs=162.0
Q ss_pred HHhchHHhHhhhcCCccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEeccccc
Q 001022 203 LFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLR 282 (1186)
Q Consensus 203 VFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~ 282 (1186)
||+.+.|+|+.+++|||+|||+||||||||||||+|++.++||+||++++
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~------------------------------ 57 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD------------------------------ 57 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH------------------------------
Confidence 99998899999999999999999999999999999999999999999987
Q ss_pred ccCCCCCCCceEEEecccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccC---Cc
Q 001022 283 ELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT---GE 355 (1186)
Q Consensus 283 DLL~~~~~~~~~i~~~~~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~t---g~ 355 (1186)
+..++..|..+|.++.|. |||||+||+|++.+.+... +.
T Consensus 58 ----------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~~ 103 (186)
T cd01363 58 ----------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQ 103 (186)
T ss_pred ----------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCccc
Confidence 677888888899777764 8999999999999877654 45
Q ss_pred eeeeeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCccccEEEe
Q 001022 356 NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVN 435 (1186)
Q Consensus 356 ~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ 435 (1186)
...|+|+||||||||+..+++..+.+++|+..||+||++|++||.+|+++..|||||+||||+||+|+|||||+|+||+|
T Consensus 104 ~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~t~~i~~ 183 (186)
T cd01363 104 PKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRTLMVAC 183 (186)
T ss_pred eeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCeEEEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCC
Q 001022 436 ICP 438 (1186)
Q Consensus 436 ISP 438 (1186)
|||
T Consensus 184 vsP 186 (186)
T cd01363 184 ISP 186 (186)
T ss_pred eCc
Confidence 999
No 30
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=99.97 E-value=5.6e-33 Score=335.58 Aligned_cols=654 Identities=35% Similarity=0.368 Sum_probs=454.1
Q ss_pred EEEecCCCccCCCCceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccccCCCCCCcHHHHHH
Q 001022 172 IRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFE 251 (1186)
Q Consensus 172 I~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRale 251 (1186)
+..+............+.|+.+..+...+..-+....+.+..++++++.. +|++|++.+.....|++.+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 83 (670)
T KOG0239|consen 12 IHGNTSDDTLSNPKKRFELARVYSPSVGQPSLFSDVQPFVQSALEGLNVK--------AGLTYTMEGSNQPGGLLARLFK 83 (670)
T ss_pred ccCCcccccccccccccCccccccccccccccCCccccchhhhhhhhhcc--------hhhhhhhhhhcCcchhHHHhhh
Confidence 33333334444566889999999888777777777777778888888775 8999999999999999999988
Q ss_pred HHHHhhccCcccccccceeEEEEEEecccccccCCCCCCCceEEEecccccceeeeeeccCCHHHHHHHHHHHHhhcCCC
Q 001022 252 ELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGND 331 (1186)
Q Consensus 252 dLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~~i~~~~~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~ 331 (1186)
.++......... ..++.|++.+.|++.........+..........+..........+..+......++...
T Consensus 84 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 155 (670)
T KOG0239|consen 84 ELIDLANSDKTS--------NVVEAYNERLRDLLSELQSNLSELNMALLESVEELSQAEEDNPSIFVSLLELAQENRGLY 155 (670)
T ss_pred hcccccccCCCc--------hhHHHHHHHHhhhccccccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHHHhhhcccc
Confidence 888754432221 167889999999987654332222222222233344445555666666666665555443
Q ss_pred CCCCceeEEEEEEEEEEeeccCCceeeeeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCCCcccC
Q 001022 332 VSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPY 411 (1186)
Q Consensus 332 ~T~SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~~hVPY 411 (1186)
...++. .... ...++|+|+.+-......-+....+...+-.+...+...+..
T Consensus 156 ~~~~~~---------------~~~~---~~~~~~~~~k~~~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~---------- 207 (670)
T KOG0239|consen 156 LDLSKV---------------TPEN---SLSLLDLALKESLKLESDLGDLVTELEHVTNSISELESVLKS---------- 207 (670)
T ss_pred cccccc---------------chhh---hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhh----------
Confidence 332222 0111 111556666654433332222223332222222222222222
Q ss_pred CCCccccccccccCCCccccEEEeeCCCCCCHHHHHHHhHHHHHHhhcccccCcchhhhhhhHHHHHHHHHHHHHHHHHH
Q 001022 412 ENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQ 491 (1186)
Q Consensus 412 RdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRAR~I~~~~~n~~~ikk~k~i~~~~~~el~~le~eI~ 491 (1186)
....+..|.+.++ .|+...+.+..-. .......++|.
T Consensus 208 -~~~~~~~l~~~~~-------------------------~~~~~~~~~~~l~-----------------~~~~~~~~~i~ 244 (670)
T KOG0239|consen 208 -AQEERRVLADSLG-------------------------NYADLRRNIKPLE-----------------GLESTIKKKIQ 244 (670)
T ss_pred -hHHHHHHHHHHhh-------------------------hhhhHHHhhhhhh-----------------hhhhHHHHHHH
Confidence 3444555555554 4444444432111 11122334489
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 492 DLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQI 571 (1186)
Q Consensus 492 eLkeEI~~Lr~~L~~~~~q~~~l~~E~qk~~k~~~elq~~L~se~~~L~ek~k~ekE~~~qL~~ql~qLl~~eeE~k~qi 571 (1186)
.|+.++..|+..+...+.++..+.++.+..|.....++.++...+..+.+.+ .+++...++.+++.++...
T Consensus 245 ~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGn-------- 315 (670)
T KOG0239|consen 245 ALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKGN-------- 315 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcC--------
Confidence 9999999999999999999999999999888887777666666665555555 4444444444444333211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccC----CCCCcccccccccCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 001022 572 QQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIR----SEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERL 647 (1186)
Q Consensus 572 qq~e~eIe~LqqeIeeLe~qLke~l~s~s~~~~~r----~e~~~~s~s~~~~~~e~~d~~~~~kKLEEeLkkrd~lIe~l 647 (1186)
|...=+. +-.+.+........ .+..+.....+.......-....-.+....++.+++..+..
T Consensus 316 -------------IRV~CRv-RP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~ 381 (670)
T KOG0239|consen 316 -------------IRVFCRV-RPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEV 381 (670)
T ss_pred -------------ceEEEEe-cCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHH
Confidence 1100000 00011111100000 00000000101111111111345567888899999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCCCCCCCCCCccccCCCcccccCCCeEEEeccCccccccCCchhh
Q 001022 648 HEENEKLFDRLTEKASSLSSPLSKGSVNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALVKSSSEKIKTTPAGEY 727 (1186)
Q Consensus 648 ~ee~ekl~~rlt~k~~~~ssp~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (1186)
+.-+...+|....-.-.-.--.+.++=.|.+. .+..+ .+.|.+ ..+.-+.+..+++|-...+++|.+||
T Consensus 382 ~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~--------~~~~~-Giipra--l~~lF~~~~~~~~g~~y~~~~s~~EI 450 (670)
T KOG0239|consen 382 SPLVQSALDGYNVCIFAYGQTGSGKTYTMSGP--------TPEDP-GIIPRA--LEKLFRTITSLKSGWKYDKTVSMLEI 450 (670)
T ss_pred HHHHHHHhcCcceeEEEecccCCCccccccCC--------CcccC-CccHHH--HHHHHHHHHhhccCceEEeeeehhHH
Confidence 99999999998877333222333333333332 11222 455555 67777888888999999999999999
Q ss_pred HHHhhhCCCCcc-cccchhhccchhhHHHHHHHHHHHhccchhHHHHHHHhhhHHHHhHhcCcccchhhhhhhhhhhHHH
Q 001022 728 LTAALNDFNPEQ-YDNLAVISDGANKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRVRILYI 806 (1186)
Q Consensus 728 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (1186)
.+.++.||.++. |.+.++|.+++|+.+|++.+++|+.|..++|.+|.+|.+..+++.+.+.|.+.+++|+|.+|+|.|+
T Consensus 451 YNe~i~DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~ 530 (670)
T KOG0239|consen 451 YNEAIRDLLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGI 530 (670)
T ss_pred HHHHHHHhccccccccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEecc
Confidence 999999999999 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCccccccccCcchhhhhccCCCCCCCCCCCCCCCCCCcccccccccccccccccccccchhhhhhhhccccccc
Q 001022 807 RSLLARSPELQSIMVSPVECFLEKSNTGRSRSSSRGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGIDQDT 886 (1186)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 886 (1186)
++.+.+.+.|+.+|.+.|+++| .+++|.++.++.+.|..++.++......+.+.+ .+.++...++
T Consensus 531 -------~~~t~~~~~g~l~LVDLAGSER------~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~--k~~HiPyRNS 595 (670)
T KOG0239|consen 531 -------NELTGIRVTGVLNLVDLAGSER------VSKSGVTGERLKEAQNINKSLSALGDVISALAS--KRSHIPYRNS 595 (670)
T ss_pred -------ccCcccccccceeEeecccCcc------cCcCCCchhhhHHHHHhchhhhhhHHHHHHHhh--cCCCCccccc
Confidence 9999999999999999998887 777899999999999999999999988888877 4445557999
Q ss_pred ccccccccchhhhHHHHhhhhcchhhhhhhhccCChhhhHHHHHHHHhhcccccccccCCCCCCcccchhhhHHhh
Q 001022 887 WRHQVTGGKLREIQEEAKSFATGNKALAALFVHTPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQLELLSTAI 962 (1186)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 962 (1186)
-..||.+..|. .+....-|+++|+..++++.|+|.+++++++|+|....+.+...|+++.+++..|+++..++|+
T Consensus 596 KLT~lLq~sLG-G~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (670)
T KOG0239|consen 596 KLTQLLQDSLG-GDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARKQVSTSDDVSLKRFGQLEKLSTAI 670 (670)
T ss_pred chHHHhHhhhC-CccceeeEEEeCccHHHHhhhhhccchHHHhhceecccccccccccchhhhhhhhhhhhhhhcC
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999885
No 31
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.70 E-value=1.3e-10 Score=140.85 Aligned_cols=263 Identities=22% Similarity=0.216 Sum_probs=170.5
Q ss_pred hHHHHhhhhhhhccCCCCEEEEEeeCCCCCCC--CCceEeecC-----CcEEEEecCCCccCCCCceeecceeeCCCCCh
Q 001022 128 LINEKKRLFNDLLTAKGNIKVFCRTRPLFEDE--GPSVVEFTD-----DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQ 200 (1186)
Q Consensus 128 ~~~eRkkLhN~l~elkGnIRVf~RVRPl~~~E--~~svV~~~d-----~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQ 200 (1186)
+.+.+|.||+.+...+ +++|+|+|+|..... ......+.+ ...+.++.. .........|.||.+|.+...+
T Consensus 290 eskLTRlLq~sLgG~~-~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~ 367 (568)
T COG5059 290 ESKLTRLLQDSLGGNC-NTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSS-SDSSREIEEIKFDLSEDRSEIE 367 (568)
T ss_pred hhHHHHHHHHhcCCCc-cEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCc-CcchHHHHHHHhhhhhhhhhhh
Confidence 4567899999999999 999999999987442 212222211 112222211 1223345789999999999999
Q ss_pred hhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEeccc
Q 001022 201 AELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQ 280 (1186)
Q Consensus 201 eeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~ 280 (1186)
..+|....-+++..++| +++||++++|+++||. ....++..-.+...|..........|.|...+-++++|-..
T Consensus 368 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 441 (568)
T COG5059 368 ILVFREQSQLSQSSLSG----IFAYMQSLKKETETLK--SRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDR 441 (568)
T ss_pred hHHHHHHHhhhhhhhhh----HHHHHhhhhhhhhccc--chhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999988889998988 9999999999999995 33456666666888887777667778888888888887222
Q ss_pred ccccCCCCCCCceEE-Eeccc--ccceeeeeeccCCHHHHHHHHHHHHhhcCCCCC----CCceeEEEEEEEEEEeeccC
Q 001022 281 LRELLPQTGNGLAKI-RLQSL--ESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVS----KFNVSHLIIMIHIYYNNLIT 353 (1186)
Q Consensus 281 V~DLL~~~~~~~~~i-~~~~~--~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T----~SSRSH~IftI~V~~~n~~t 353 (1186)
..++........... ..... .....+.........+..... .+...+....+ .++++|.+|+.+....+...
T Consensus 442 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 520 (568)
T COG5059 442 LLLLREEELSKKKTKIHKLNKLRHDLSSLLSSIPEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSST 520 (568)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHhhhhcchhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchhhhh
Confidence 222222211110000 00000 000000000000001111111 12233333322 37799999988887665544
Q ss_pred CceeeeeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhc
Q 001022 354 GENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLT 403 (1186)
Q Consensus 354 g~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa 403 (1186)
+... ++.|||||+||. -+..-|.++++..++|++|..+++++.++.
T Consensus 521 ~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 521 KELS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred HHHH---hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 4333 899999999999 999999999999999999999999998764
No 32
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.56 E-value=0.22 Score=63.19 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh---hccCCCC
Q 001022 634 EEELKKRDALIERLHEENEKLFDRLTEK---ASSLSSP 668 (1186)
Q Consensus 634 EEeLkkrd~lIe~l~ee~ekl~~rlt~k---~~~~ssp 668 (1186)
..+|+-.+..|-.+++|+..|+.|+.+. ||.++=+
T Consensus 628 krq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~~~~~ 665 (697)
T PF09726_consen 628 KRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMPSDSYC 665 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 3455666777778889999999998888 6664443
No 33
>PRK11637 AmiB activator; Provisional
Probab=96.51 E-value=1.6 Score=52.37 Aligned_cols=9 Identities=44% Similarity=0.165 Sum_probs=4.8
Q ss_pred ccccccCcc
Q 001022 816 LQSIMVSPV 824 (1186)
Q Consensus 816 ~~~~~~~~~ 824 (1186)
|++|.|.+=
T Consensus 378 ~~~~~v~~G 386 (428)
T PRK11637 378 NQSALVSVG 386 (428)
T ss_pred CCcCCCCCc
Confidence 455555543
No 34
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.05 E-value=0.19 Score=63.68 Aligned_cols=119 Identities=22% Similarity=0.273 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--ccccCCCCCcccccc
Q 001022 539 LADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEV--RSTIRSEPMPAVSSV 616 (1186)
Q Consensus 539 L~ek~k~ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLke~l~s~s~--~~~~r~e~~~~s~s~ 616 (1186)
+...+..++.++++++.++..+.+..+.-+..++++|.++...+..-..+|.+|.+..+.... ....+. .+....
T Consensus 458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~--~~~~~~- 534 (697)
T PF09726_consen 458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARA--LAQAQA- 534 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhc--cccchh-
Confidence 334445566677777788877776666667778888888888888878888877653322111 111111 101111
Q ss_pred cccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 617 LRTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 617 ~~~~~e~~d~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
...+-+..--.+.++||.|+++-...++.+++++..|..++.+.
T Consensus 535 -~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l 578 (697)
T PF09726_consen 535 -TRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQEL 578 (697)
T ss_pred -ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111222334556677777776666666666666666655433
No 35
>PRK11637 AmiB activator; Provisional
Probab=95.58 E-value=2.6 Score=50.49 Aligned_cols=7 Identities=29% Similarity=0.283 Sum_probs=3.3
Q ss_pred cccCCCc
Q 001022 694 DVAPLPL 700 (1186)
Q Consensus 694 ~~~~~~~ 700 (1186)
..+|-|+
T Consensus 305 g~~~~Pv 311 (428)
T PRK11637 305 GQAFWPV 311 (428)
T ss_pred CCCccCC
Confidence 3445554
No 36
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.85 E-value=4.8 Score=45.25 Aligned_cols=93 Identities=19% Similarity=0.319 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccc
Q 001022 539 LADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLR 618 (1186)
Q Consensus 539 L~ek~k~ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLke~l~s~s~~~~~r~e~~~~s~s~~~ 618 (1186)
|...+...+++...+...+.++......+..++......+..++..+.+++..+.
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e------------------------- 148 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLE------------------------- 148 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 3344455566666666666666655555555555555555555555555554331
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 619 TTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 619 ~~~e~~d~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
..+....++.++...++..+.+-+-.++-+-|+|+-..
T Consensus 149 -----~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri~~~ 186 (239)
T COG1579 149 -----EEVAEIREEGQELSSKREELKEKLDPELLSEYERIRKN 186 (239)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 12334455677777888888888888888888887665
No 37
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.70 E-value=3.9 Score=45.99 Aligned_cols=37 Identities=30% Similarity=0.470 Sum_probs=24.0
Q ss_pred chhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhh
Q 001022 625 DSSAVSKKLEEELKKRDALIE---RLHEENEKLFDRLTEK 661 (1186)
Q Consensus 625 d~~~~~kKLEEeLkkrd~lIe---~l~ee~ekl~~rlt~k 661 (1186)
..+++.-=||-||-.++.+++ |+..|-..|.++|.-.
T Consensus 144 qAIErnAfLESELdEke~llesvqRLkdEardlrqelavr 183 (333)
T KOG1853|consen 144 QAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELAVR 183 (333)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666678889999988885 4445555555555433
No 38
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=94.66 E-value=4.7 Score=53.29 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=11.9
Q ss_pred EeeccCCCCccccc
Q 001022 223 FAYGQTHSGKTHTM 236 (1186)
Q Consensus 223 fAYGQTGSGKTyTM 236 (1186)
+-+|++|||||..|
T Consensus 27 ~i~G~NGsGKS~il 40 (1164)
T TIGR02169 27 VISGPNGSGKSNIG 40 (1164)
T ss_pred EEECCCCCCHHHHH
Confidence 34899999999876
No 39
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.55 E-value=15 Score=44.51 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=17.2
Q ss_pred cccccCCCCCCCCCCccccCCCcc
Q 001022 678 PRDMARNDNNNKGLPVDVAPLPLS 701 (1186)
Q Consensus 678 ~~~~~r~~~~~~~~~~~~~~~~~~ 701 (1186)
|-++.-+.++.++++...++.|+.
T Consensus 281 p~~~~i~~t~~~~~~~G~l~~PV~ 304 (420)
T COG4942 281 PEKMLISSTGGFGALRGQLAWPVT 304 (420)
T ss_pred cchhccccccccccccCCcCCCCC
Confidence 334455566778888889999986
No 40
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=94.53 E-value=5.2 Score=52.94 Aligned_cols=30 Identities=33% Similarity=0.378 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001022 631 KKLEEELKKRDALIERLHEENEKLFDRLTE 660 (1186)
Q Consensus 631 kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~ 660 (1186)
.++++++......+..+..++.++..++..
T Consensus 465 ~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~ 494 (1164)
T TIGR02169 465 SKYEQELYDLKEEYDRVEKELSKLQRELAE 494 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555554443
No 41
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.47 E-value=1.3 Score=58.17 Aligned_cols=33 Identities=36% Similarity=0.336 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCC
Q 001022 642 ALIERLHEENEKLFDRLTEKASSLSSPLSKGSV 674 (1186)
Q Consensus 642 ~lIe~l~ee~ekl~~rlt~k~~~~ssp~~~~~~ 674 (1186)
.....+..++.++++|+.+...+++|..+++.+
T Consensus 570 ~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kV 602 (1293)
T KOG0996|consen 570 KEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKV 602 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 333444445558888888887777777766544
No 42
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.42 E-value=3.2 Score=53.22 Aligned_cols=84 Identities=17% Similarity=0.234 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCchhHHHHHHHHHHHHHH
Q 001022 562 QLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRD 641 (1186)
Q Consensus 562 ~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLke~l~s~s~~~~~r~e~~~~s~s~~~~~~e~~d~~~~~kKLEEeLkkrd 641 (1186)
..+.+++.+++..+.+++.|+..|++++.+++.....-. ++.... ++...-...=.+...+-|++.-
T Consensus 632 ~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~--~~~~~~-----------~~s~~L~~~Q~~~I~~iL~~~~ 698 (717)
T PF10168_consen 632 EAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE--SQKSPK-----------KKSIVLSESQKRTIKEILKQQG 698 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccc-----------CCCccCCHHHHHHHHHHHHHHH
Confidence 446667777777888888888888888776654221111 111000 0111112233456788889999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001022 642 ALIERLHEENEKLFDRL 658 (1186)
Q Consensus 642 ~lIe~l~ee~ekl~~rl 658 (1186)
+.|+.+-++.++++..+
T Consensus 699 ~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 699 EEIDELVKQIKNIKKIV 715 (717)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999887654
No 43
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.39 E-value=4.1 Score=52.31 Aligned_cols=81 Identities=19% Similarity=0.231 Sum_probs=45.8
Q ss_pred hccchhh--------HHHHHHHHHHHhccchhHH----HHHHHhhhHHHHhH----------hcCcccchhhhhhhhhhh
Q 001022 746 ISDGANK--------LLMLVLAAVIKAGASREHE----ILAEIRDAVFAFIR----------KMEPTRVMDTMLVSRVRI 803 (1186)
Q Consensus 746 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 803 (1186)
++||.|- ++|-.++-+|-.|++--|- =..-+-+.+.-|+| ----.+++|-|++-+
T Consensus 645 la~~~d~s~~i~~v~~fs~~~~~~~~na~a~~~ta~~e~~d~v~~l~k~~~~~a~~~~~~l~~~~al~~~d~~~l~~--- 721 (980)
T KOG0980|consen 645 LADGDDASDLIHCVTLFSHLISTTINNAKATAYTASPEGSDRVNDLCKKCGREALAFLVSLSSENALERGDEMLLRQ--- 721 (980)
T ss_pred cCCchhhhhHhhHHHHHHHHHHHHHhcchhheeccCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHHH---
Confidence 5666666 6666666666655543332 22223333333322 123456788885543
Q ss_pred HHHHHhhhcCccc----cccccCcchhhhhc
Q 001022 804 LYIRSLLARSPEL----QSIMVSPVECFLEK 830 (1186)
Q Consensus 804 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 830 (1186)
||--+..-.||| -+|++-|++.-|++
T Consensus 722 -~lq~~~~~~eel~~~~~di~~e~l~~lld~ 751 (980)
T KOG0980|consen 722 -YLQTLNQLGEELLPKELDIDQELLGNLLDI 751 (980)
T ss_pred -HHHHHHHHhHHhccccchhhHHHHHHHHHH
Confidence 777888888887 35666676666654
No 44
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.13 E-value=11 Score=46.78 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 478 DARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEV 518 (1186)
Q Consensus 478 ~~~~el~~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~ 518 (1186)
++.+....++.+...|+.++..|+..|....+.+..+..+.
T Consensus 154 eL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~ 194 (546)
T PF07888_consen 154 ELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQ 194 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666677777777776666655555554433
No 45
>PRK09039 hypothetical protein; Validated
Probab=94.11 E-value=5 Score=47.18 Aligned_cols=44 Identities=14% Similarity=0.254 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 549 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 549 ~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
+..++...+......-.+..-++..++.+|+.|+..+..|+.++
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L 160 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAAL 160 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444455555555555555555555555
No 46
>PRK09039 hypothetical protein; Validated
Probab=93.99 E-value=4.7 Score=47.44 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 552 QLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 552 qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
.+..+..++.....+.+....+...++..|+++|+.|+.++
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Ql 153 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQL 153 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44455555554455555555666666677777777777665
No 47
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.99 E-value=7.3 Score=42.64 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=18.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 001022 625 DSSAVSKKLEEELKKRDALIER 646 (1186)
Q Consensus 625 d~~~~~kKLEEeLkkrd~lIe~ 646 (1186)
++..+..++++-|..+...|..
T Consensus 179 ~~~~v~~~l~~~l~~KN~~I~~ 200 (201)
T PF13851_consen 179 ALSQVSKKLEDVLDSKNQTIKD 200 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 5677888999999998888864
No 48
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=93.90 E-value=8.3 Score=50.88 Aligned_cols=7 Identities=14% Similarity=0.757 Sum_probs=3.4
Q ss_pred hhhCCCC
Q 001022 731 ALNDFNP 737 (1186)
Q Consensus 731 ~~~~~~~ 737 (1186)
|+..|.|
T Consensus 980 aiee~~~ 986 (1179)
T TIGR02168 980 KIKELGP 986 (1179)
T ss_pred HHHHcCC
Confidence 4544444
No 49
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.74 E-value=0.036 Score=60.44 Aligned_cols=50 Identities=22% Similarity=0.450 Sum_probs=34.1
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
..|+||.-+.. ..++..|..+..+.+.--..+|. +|-||++|+||||-|.
T Consensus 3 ~~~tFdnfv~g-~~N~~a~~~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 3 PKYTFDNFVVG-ESNELAYAAAKAIAENPGERYNP-LFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp TT-SCCCS--T-TTTHHHHHHHHHHHHSTTTSSSE-EEEEESTTSSHHHHHH
T ss_pred CCCccccCCcC-CcHHHHHHHHHHHHhcCCCCCCc-eEEECCCCCCHHHHHH
Confidence 57999996653 44677777666666663334555 6889999999999874
No 50
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=93.73 E-value=5.2 Score=52.71 Aligned_cols=8 Identities=38% Similarity=0.733 Sum_probs=3.4
Q ss_pred cccccccc
Q 001022 859 GFKINLKP 866 (1186)
Q Consensus 859 ~~~~~~~~ 866 (1186)
||.|...|
T Consensus 1072 ~~~~~~~~ 1079 (1179)
T TIGR02168 1072 GIEIFAQP 1079 (1179)
T ss_pred CceEEEeC
Confidence 44444443
No 51
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=93.62 E-value=4.2 Score=48.38 Aligned_cols=61 Identities=25% Similarity=0.336 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc-ccccCCCCCcccccccccCCCCCchhHHHHHHHHHHHHHHHHHH
Q 001022 575 DSTIKTLQAKINSIESQRNEALHSSEV-RSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIE 645 (1186)
Q Consensus 575 e~eIe~LqqeIeeLe~qLke~l~s~s~-~~~~r~e~~~~s~s~~~~~~e~~d~~~~~kKLEEeLkkrd~lIe 645 (1186)
...|+.|+.+++.|+..+..+.++... ..+++.+.- ... ..-..+++||..++.+|+++-.
T Consensus 252 ~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~--------~~r--een~rlQrkL~~e~erRealcr 313 (552)
T KOG2129|consen 252 KLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEV--------DHR--EENERLQRKLINELERREALCR 313 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 347888999999999988765444433 223322211 000 1245588899999998877653
No 52
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.29 E-value=12 Score=46.70 Aligned_cols=30 Identities=23% Similarity=0.407 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 489 EIQDLKQEILGLRQALKEANDQCVLLYNEV 518 (1186)
Q Consensus 489 eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~ 518 (1186)
+...|++++..++..+.....+...+..|+
T Consensus 284 e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL 313 (546)
T PF07888_consen 284 ENEALKEQLRSAQEQLQASQQEAELLRKEL 313 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444
No 53
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.28 E-value=4.7 Score=52.97 Aligned_cols=55 Identities=18% Similarity=0.346 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 538 MLADKHKIEKEQNAQLRNQVAQLLQLE-QEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 538 ~L~ek~k~ekE~~~qL~~ql~qLl~~e-eE~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
..+..++..+.....++.++..+.+.. .+...++.+.+++++.|+.+++.++.++
T Consensus 362 ~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~ 417 (1074)
T KOG0250|consen 362 EIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQI 417 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555666665555333 4555566666777777777777666555
No 54
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.22 E-value=7.4 Score=49.01 Aligned_cols=36 Identities=11% Similarity=0.234 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 626 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 626 ~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
+..+.-..-.-++|+++.|...-.|...|..++...
T Consensus 489 Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l 524 (594)
T PF05667_consen 489 YTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSL 524 (594)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555567777777777777777776665554
No 55
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=93.17 E-value=0.1 Score=63.25 Aligned_cols=88 Identities=23% Similarity=0.385 Sum_probs=58.1
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccccc------C-----CCCCCcHHHHHHHHH
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG------S-----SHDRGLYARCFEELF 254 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G------s-----~~~~GIIPRaledLF 254 (1186)
..|....-|.|.-+|-. .|..||+++-+|...-+ -.|.|||||||||-- - .++.-+ ..+||
T Consensus 3 ~~F~l~s~f~PaGDQP~---AI~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTL----AaQLy 74 (663)
T COG0556 3 KPFKLHSPFKPAGDQPE---AIAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTL----AAQLY 74 (663)
T ss_pred CceEeccCCCCCCCcHH---HHHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhH----HHHHH
Confidence 45777777888888754 45677777777765544 579999999999953 1 133333 34455
Q ss_pred HhhccCcccccccceeEEEEEEeccccc
Q 001022 255 DLSNSDTTATARFNFAVTVFELYNEQLR 282 (1186)
Q Consensus 255 ~~i~~~~~~~~~y~V~VS~lEIYNE~V~ 282 (1186)
....+ --+.......|||+.-|.-..|
T Consensus 75 ~Efk~-fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 75 SEFKE-FFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HHHHH-hCcCcceEEEeeeccccCcccc
Confidence 44432 2345567789999999865544
No 56
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.92 E-value=18 Score=43.04 Aligned_cols=14 Identities=21% Similarity=0.271 Sum_probs=11.0
Q ss_pred hhHHHHHHHHhhcc
Q 001022 391 SLSALGDVLSSLTS 404 (1186)
Q Consensus 391 SLsALg~VIsALa~ 404 (1186)
+...||.||..+.+
T Consensus 8 ~vlvLgGVIA~~gD 21 (499)
T COG4372 8 FVLVLGGVIAYAGD 21 (499)
T ss_pred HHHHHHhHHHHHhh
Confidence 56778999988875
No 57
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.73 E-value=12 Score=38.85 Aligned_cols=56 Identities=7% Similarity=0.125 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 539 LADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1186)
Q Consensus 539 L~ek~k~ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLke 594 (1186)
+.+........+.....++.+....-.+..-+++.++.+...++.++++|..++++
T Consensus 85 LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 85 LEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444445556666677777777777777766643
No 58
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.61 E-value=9.7 Score=48.52 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=12.1
Q ss_pred HHHHhhcccccccccCCCC
Q 001022 930 RSWLAENFEFLSVTGDDAS 948 (1186)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~ 948 (1186)
-.|=|.|=.-||..-+|.+
T Consensus 820 y~wrakke~dLsFskgd~I 838 (1118)
T KOG1029|consen 820 YPWRAKKENDLSFSKGDTI 838 (1118)
T ss_pred ccccccccccccccCCCee
Confidence 3577777666776666654
No 59
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.58 E-value=8 Score=45.06 Aligned_cols=47 Identities=23% Similarity=0.300 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 546 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 546 ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
.+..+...+..+.++.....+.+..+......+..++.+|+++++..
T Consensus 221 ~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 221 QKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444445555555555555555433
No 60
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=92.41 E-value=26 Score=40.97 Aligned_cols=42 Identities=29% Similarity=0.420 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 001022 551 AQLRNQVAQLLQLEQEQKMQIQQ-RDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 551 ~qL~~ql~qLl~~eeE~k~qiqq-~e~eIe~LqqeIeeLe~qL 592 (1186)
+.|..++.++...+.++...+.+ .+..+..|+.+|..|+.+.
T Consensus 109 n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~ 151 (310)
T PF09755_consen 109 NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEK 151 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444444433332 3445667777777776533
No 61
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.35 E-value=12 Score=46.04 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=13.1
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
..+-+|++|+|||..+
T Consensus 29 ~~~i~G~NG~GKStll 44 (562)
T PHA02562 29 KTLITGKNGAGKSTML 44 (562)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556899999999865
No 62
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=92.31 E-value=3 Score=50.25 Aligned_cols=155 Identities=19% Similarity=0.209 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 485 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLE 564 (1186)
Q Consensus 485 ~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~qk~~k~~~elq~~L~se~~~L~ek~k~ekE~~~qL~~ql~qLl~~e 564 (1186)
....+|..|+.++..|.+.++++.+ +....+++.++|.. ++.+. .++...+..++.+. ..-..+.
T Consensus 268 ~i~~~i~~lk~~n~~l~e~i~ea~k-~s~~i~~l~ek~r~---l~~D~----nk~~~~~~~mk~K~-------~~~~g~l 332 (622)
T COG5185 268 IINTDIANLKTQNDNLYEKIQEAMK-ISQKIKTLREKWRA---LKSDS----NKYENYVNAMKQKS-------QEWPGKL 332 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---HhhhH----HHHHHHHHHHHHHH-------HhcchHH
Confidence 3455677777777777766665432 22223344444432 22222 12222222222211 1122233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCchhHHHHHHHHHHHHHHHHH
Q 001022 565 QEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALI 644 (1186)
Q Consensus 565 eE~k~qiqq~e~eIe~LqqeIeeLe~qLke~l~s~s~~~~~r~e~~~~s~s~~~~~~e~~d~~~~~kKLEEeLkkrd~lI 644 (1186)
+.++.++...+++|+.|+..+..|+.++...-.+-+...--..+... ..++.+-+.....+|......++-++
T Consensus 333 ~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~-------L~reL~~i~~~~~~L~k~V~~~~lea 405 (622)
T COG5185 333 EKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREK-------LTRELDKINIQSDKLTKSVKSRKLEA 405 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHH-------HHHHHHHhcchHHHHHHHHHhHHHHH
Confidence 44566777778888888888888887775433333322111111110 01112223334456777777788888
Q ss_pred HHHHHHHHHHHHHHhhh
Q 001022 645 ERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 645 e~l~ee~ekl~~rlt~k 661 (1186)
+.-.+.++|.+..+...
T Consensus 406 q~~~~slek~~~~~~sl 422 (622)
T COG5185 406 QGIFKSLEKTLRQYDSL 422 (622)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77778888877666655
No 63
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.27 E-value=18 Score=50.12 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.3
Q ss_pred EEEeeccCCCCcccccc
Q 001022 221 SIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM~ 237 (1186)
++.-+|++|||||.+|-
T Consensus 29 ~~~l~G~NGaGKSTll~ 45 (1486)
T PRK04863 29 VTTLSGGNGAGKSTTMA 45 (1486)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 56678999999999884
No 64
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.18 E-value=24 Score=40.42 Aligned_cols=123 Identities=20% Similarity=0.220 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc---ccCCCCCcccccccccCCCCCchhHHHHHHHHHHHHHHHHHH
Q 001022 569 MQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRS---TIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIE 645 (1186)
Q Consensus 569 ~qiqq~e~eIe~LqqeIeeLe~qLke~l~s~s~~~---~~r~e~~~~s~s~~~~~~e~~d~~~~~kKLEEeLkkrd~lIe 645 (1186)
-++..-...|+.|++++..++.+|.+......... ..-..+...-... .+....-..++-..|.|..++..+.-+
T Consensus 102 gQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p--~tp~q~~~~sk~e~L~ekynkeveerk 179 (307)
T PF10481_consen 102 GQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATP--LTPSQYYSDSKYEELQEKYNKEVEERK 179 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCC--CChhhhhhhhhHHHHHHHHHHHHHHHh
Confidence 34444555667777777777766654333222111 1111111110110 011111223445567777777777778
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCcccccCCCCCCCCCCc--cccCCCcc
Q 001022 646 RLHEENEKLFDRLTEKASSLSSPLSKGSVNVQPRDMARNDNNNKGLPV--DVAPLPLS 701 (1186)
Q Consensus 646 ~l~ee~ekl~~rlt~k~~~~ssp~~~~~~~~~~~~~~r~~~~~~~~~~--~~~~~~~~ 701 (1186)
+++.|+.-|.- |. ++-| -.+..|.-+++.|--+++.-+|. +--||-++
T Consensus 180 rle~e~k~lq~----k~--~~q~--~~qstmsHRdIArhQasSSVFsWQqektps~~s 229 (307)
T PF10481_consen 180 RLEAEVKALQA----KK--ASQA--APQSTMSHRDIARHQASSSVFSWQQEKTPSRLS 229 (307)
T ss_pred hHHHHHHHHhc----cc--CCCc--CccccccHHHHHHHhccCcccccccccCccccc
Confidence 88888887742 21 1111 22346777788877766655554 55555543
No 65
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.18 E-value=24 Score=39.85 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001022 626 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTE 660 (1186)
Q Consensus 626 ~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~ 660 (1186)
+.+....+++++++-++......++-..|..++-.
T Consensus 140 ~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ 174 (239)
T COG1579 140 LAEAEARLEEEVAEIREEGQELSSKREELKEKLDP 174 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 34455566666666666666666665555444433
No 66
>PRK03918 chromosome segregation protein; Provisional
Probab=91.93 E-value=29 Score=45.13 Aligned_cols=83 Identities=16% Similarity=0.228 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCchhHHHHHHHHHHHHHHHHH
Q 001022 565 QEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALI 644 (1186)
Q Consensus 565 eE~k~qiqq~e~eIe~LqqeIeeLe~qLke~l~s~s~~~~~r~e~~~~s~s~~~~~~e~~d~~~~~kKLEEeLkkrd~lI 644 (1186)
......+......+..++..+++|+..+.........|..- ..+. . ......+..+.+++++.-...+
T Consensus 401 ~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~~~Cp~c-~~~L----------~-~~~~~el~~~~~~ei~~l~~~~ 468 (880)
T PRK03918 401 EEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVC-GREL----------T-EEHRKELLEEYTAELKRIEKEL 468 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCcC----------C-chhHHHHHHHHHHHHHHHHHHH
Confidence 33444455555556666666666665554433333344331 1111 0 0112333345555555555555
Q ss_pred HHHHHHHHHHHHHHh
Q 001022 645 ERLHEENEKLFDRLT 659 (1186)
Q Consensus 645 e~l~ee~ekl~~rlt 659 (1186)
..+.++++++.+++.
T Consensus 469 ~~l~~~~~~l~~~~~ 483 (880)
T PRK03918 469 KEIEEKERKLRKELR 483 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555544443
No 67
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.90 E-value=9.7 Score=53.46 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q 001022 1121 CAQRQIADARRMVEVLQ 1137 (1186)
Q Consensus 1121 ~~~~~~~~~~~~~~~~~ 1137 (1186)
||.+++.||.+-.+.++
T Consensus 1622 ~ank~~~d~~K~lkk~q 1638 (1930)
T KOG0161|consen 1622 HANKANEDAQKQLKKLQ 1638 (1930)
T ss_pred HHHHhhHHHHHHHHhhH
Confidence 45555555555444433
No 68
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=91.74 E-value=21 Score=48.41 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=15.6
Q ss_pred hhhcCCccEEEEeeccCCCCccccc
Q 001022 212 QSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 212 ~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
-.+-.|+++. .||.||||+-.+
T Consensus 20 i~f~~~~t~I---vGPNGSGKSNI~ 41 (1163)
T COG1196 20 INFSPGFTAI---VGPNGSGKSNIV 41 (1163)
T ss_pred eecCCCCeEE---ECCCCCchHHHH
Confidence 3344566664 499999999776
No 69
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=91.54 E-value=14 Score=47.26 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 001022 634 EEELKKRDALIERLHEENEKLFDRLTEKASSLSS 667 (1186)
Q Consensus 634 EEeLkkrd~lIe~l~ee~ekl~~rlt~k~~~~ss 667 (1186)
.+=+++.--.|+.+..+++-+.+.+.++|.++..
T Consensus 244 ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~ 277 (1265)
T KOG0976|consen 244 LTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKA 277 (1265)
T ss_pred hhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666777888888888888888887543
No 70
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=91.45 E-value=12 Score=48.89 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=24.9
Q ss_pred hhcHHHHHHHHHHHHhhccccchhhhhHhHHHhhHHHHHhhCccccccCchhH
Q 001022 1070 LISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLDIDHPCA 1122 (1186)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1122 (1186)
+..|+.+++--+.+. |++.+..+.-+-++..+...-.+ +.+|--|.|-+
T Consensus 881 ~vtl~rf~nEsnr~~---s~h~~ls~qn~eLs~~~~~~sdq-~~~l~kd~p~~ 929 (1195)
T KOG4643|consen 881 LVTLNRFLNESNRNL---SQHEILSTQNKELSQRALHDSDQ-YHLLGKDFPDQ 929 (1195)
T ss_pred HHHHHHHHHHhhccc---hhhhhhhhhhHHHHHHHHhcccc-hhhhCCCCchH
Confidence 445666666554443 35555555544444444333322 44566666654
No 71
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.30 E-value=4.2 Score=50.25 Aligned_cols=102 Identities=18% Similarity=0.151 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCchhHHHHH
Q 001022 553 LRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKK 632 (1186)
Q Consensus 553 L~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLke~l~s~s~~~~~r~e~~~~s~s~~~~~~e~~d~~~~~kK 632 (1186)
+......+..+...++.++...+++|+.++.++.+|+.++..+--+.+....-..+... -..+.+++..-..+
T Consensus 285 ~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~-------l~r~l~~i~~~~d~ 357 (581)
T KOG0995|consen 285 MKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNK-------LKRELNKIQSELDR 357 (581)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 33333444444555666777777777777777777777664332222222111111100 01112223333445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 633 LEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 633 LEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
|..+.-.++.+|+...+++++++..+...
T Consensus 358 l~k~vw~~~l~~~~~f~~le~~~~~~~~l 386 (581)
T KOG0995|consen 358 LSKEVWELKLEIEDFFKELEKKFIDLNSL 386 (581)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777777777777777776666555
No 72
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.22 E-value=18 Score=46.37 Aligned_cols=31 Identities=32% Similarity=0.361 Sum_probs=20.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 625 DSSAVSKKLEEELKKRDALIERLHEENEKLF 655 (1186)
Q Consensus 625 d~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~ 655 (1186)
.++.+.+.-|-+...++++-+++++.+++|.
T Consensus 473 ~ie~~~~q~e~~isei~qlqarikE~q~kl~ 503 (1118)
T KOG1029|consen 473 EIEEVTKQRELMISEIDQLQARIKELQEKLQ 503 (1118)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666667777776666666666653
No 73
>PRK02224 chromosome segregation protein; Provisional
Probab=91.17 E-value=17 Score=47.49 Aligned_cols=30 Identities=33% Similarity=0.412 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 632 KLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 632 KLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
+++.++...+..++.+.+..+.+.++++++
T Consensus 603 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 632 (880)
T PRK02224 603 DAEDEIERLREKREALAELNDERRERLAEK 632 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444434444444444444444444444
No 74
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=91.12 E-value=27 Score=46.39 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=15.9
Q ss_pred CccEEEEeeccCCCCcccccc
Q 001022 217 GYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 217 GyNvcIfAYGQTGSGKTyTM~ 237 (1186)
|-+.. |.-|+.||||+-.|.
T Consensus 61 g~~vN-fI~G~NGSGKSAIlt 80 (1074)
T KOG0250|consen 61 GPRVN-FIVGNNGSGKSAILT 80 (1074)
T ss_pred CCCce-EeecCCCCcHHHHHH
Confidence 55555 888999999998774
No 75
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=91.05 E-value=20 Score=44.65 Aligned_cols=115 Identities=20% Similarity=0.266 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhh---hHHHhHHHHHHHHHHHHHHH
Q 001022 475 IANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSD---LKSENYMLADKHKIEKEQNA 551 (1186)
Q Consensus 475 i~~~~~~el~~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~qk~~k~~~elq~~---L~se~~~L~ek~k~ekE~~~ 551 (1186)
..++...+...++.+|..|+.|+..|+..+......+.....++........+++.+ ++.....+.+..+.++.++.
T Consensus 100 ~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~ 179 (546)
T KOG0977|consen 100 LLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENS 179 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444555567788888888888888887766555544444433323333333322 23333444455555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 552 QLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1186)
Q Consensus 552 qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe 589 (1186)
.++..+..+.....+....-.+++..++.|..+|+=+.
T Consensus 180 rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 180 RLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 66666655554333323333444555555555555554
No 76
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=90.92 E-value=14 Score=41.11 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001022 573 QRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 573 q~e~eIe~LqqeIeeLe~qL 592 (1186)
..+..+..|+.+|..+...+
T Consensus 138 ~~E~ki~eLE~el~~~~~~l 157 (237)
T PF00261_consen 138 AAESKIKELEEELKSVGNNL 157 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhchhHHHHHHHHHHHHHHH
Confidence 33344444444444443333
No 77
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.79 E-value=11 Score=38.38 Aligned_cols=97 Identities=18% Similarity=0.275 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhHHHhHHHHHHHHHHHHHHHHHH
Q 001022 475 IANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLR 554 (1186)
Q Consensus 475 i~~~~~~el~~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~qk~~k~~~elq~~L~se~~~L~ek~k~ekE~~~qL~ 554 (1186)
+.+.+...+..++.++..|+.++..|......+.++...+..+... .+........++
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~----------------------~~~~~~~~~~L~ 74 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEE----------------------LRALKKEVEELE 74 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHH
Confidence 3344444555566666666666666655555544444333322211 112233333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 555 NQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1186)
Q Consensus 555 ~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLk 593 (1186)
.++.++..+..-.-.-+-++.+++++|+.-+.+++.-++
T Consensus 75 ~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 75 QELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 444444444333344455566667777777777765444
No 78
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=90.77 E-value=33 Score=46.62 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=10.6
Q ss_pred hHHHHHHHhhhHHHHhHhcCc
Q 001022 769 EHEILAEIRDAVFAFIRKMEP 789 (1186)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~ 789 (1186)
+++=|.+-+..+...|-+|.-
T Consensus 985 ~~~dl~~a~~~l~~~i~~~d~ 1005 (1163)
T COG1196 985 QREDLEEAKEKLLEVIEELDK 1005 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555443
No 79
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.63 E-value=14 Score=44.74 Aligned_cols=34 Identities=32% Similarity=0.313 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 628 AVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 628 ~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
...++||++|...++.|++..+.+++|..++...
T Consensus 345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~l 378 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKL 378 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 5667888888888888888888888887776654
No 80
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.41 E-value=30 Score=45.18 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=10.3
Q ss_pred hhHHHhhhCCCCcccccch
Q 001022 726 EYLTAALNDFNPEQYDNLA 744 (1186)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~ 744 (1186)
+|||| |=||+|-..-
T Consensus 599 ~~l~A----FmPdsFlrrG 613 (1243)
T KOG0971|consen 599 SLLTA----FMPDSFLRRG 613 (1243)
T ss_pred HHHHH----hCcHhhccCC
Confidence 46665 8899986544
No 81
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=90.41 E-value=17 Score=42.36 Aligned_cols=49 Identities=16% Similarity=0.105 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 544 KIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 544 k~ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
+..+.++...+..+.++.....+.+..|.....++..++.+|.++++.+
T Consensus 214 ~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 214 KKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444555555555555555555555544
No 82
>PRK02224 chromosome segregation protein; Provisional
Probab=90.39 E-value=27 Score=45.61 Aligned_cols=9 Identities=11% Similarity=0.254 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 001022 58 KQALSTKVQ 66 (1186)
Q Consensus 58 k~~l~~~v~ 66 (1186)
++.+..++.
T Consensus 151 R~~ii~~l~ 159 (880)
T PRK02224 151 RQDMIDDLL 159 (880)
T ss_pred HHHHHHHHh
Confidence 333333333
No 83
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=90.16 E-value=19 Score=50.85 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=11.6
Q ss_pred eeccCCHHHHHHHHHHHHhhcC
Q 001022 308 QEKVDNPLEFSKVLKSAFQSRG 329 (1186)
Q Consensus 308 e~~V~S~~E~~~lL~~g~~~R~ 329 (1186)
+..|+...+..++...|.-+|-
T Consensus 684 QLrcngVLEgIRicR~GfPnr~ 705 (1930)
T KOG0161|consen 684 QLRCNGVLEGIRICRQGFPNRM 705 (1930)
T ss_pred HhhccCcHHHHHHHHhhCcccc
Confidence 3445555555555555555543
No 84
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=89.99 E-value=18 Score=45.69 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=28.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 625 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 625 d~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
+|..-.+|=.+++.|--.-+..+++|++.+..+|..=
T Consensus 495 EIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~Rt 531 (594)
T PF05667_consen 495 EIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRT 531 (594)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4555666777888888888899999999887776543
No 85
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=89.97 E-value=34 Score=37.55 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 001022 628 AVSKKLEEELKKRDALIERLH---EENEKLFDRL 658 (1186)
Q Consensus 628 ~~~kKLEEeLkkrd~lIe~l~---ee~ekl~~rl 658 (1186)
.+....+..+..+...|+.+. +++-.+-+.+
T Consensus 144 ~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeL 177 (193)
T PF14662_consen 144 SLICQRDAILSERTQQIEELKKTIEEYRSITEEL 177 (193)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555 4444443433
No 86
>PRK12377 putative replication protein; Provisional
Probab=89.94 E-value=0.2 Score=56.05 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=36.9
Q ss_pred eecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccccc
Q 001022 188 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG 238 (1186)
Q Consensus 188 FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 238 (1186)
.+||........|..++..+..+++.+..+. ..++-||++|+||||.+.+
T Consensus 71 ~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CCcCCcccCChhHHHHHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 3466554445667778887777888776654 4678899999999999854
No 87
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=89.73 E-value=14 Score=38.11 Aligned_cols=45 Identities=27% Similarity=0.450 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 538 MLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKI 585 (1186)
Q Consensus 538 ~L~ek~k~ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeI 585 (1186)
.+...++.+++.+..+...+.+. .....-++..++.+++.|+..+
T Consensus 105 ~~~~~~k~~kee~~klk~~~~~~---~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 105 SLEAKLKQEKEELQKLKNQLQQR---KTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455555555444444333 3344455566666666666654
No 88
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.71 E-value=17 Score=48.51 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=10.9
Q ss_pred eeccCCCCccccc
Q 001022 224 AYGQTHSGKTHTM 236 (1186)
Q Consensus 224 AYGQTGSGKTyTM 236 (1186)
-.|+.||||+-.+
T Consensus 113 IvGPNGSGKSNVI 125 (1293)
T KOG0996|consen 113 IVGPNGSGKSNVI 125 (1293)
T ss_pred eECCCCCCchHHH
Confidence 3599999999876
No 89
>PRK06620 hypothetical protein; Validated
Probab=89.62 E-value=0.2 Score=54.60 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=35.1
Q ss_pred CceeecceeeCCCCChhhHHhchHHhHhhhcCCcc---EEEEeeccCCCCcccccc
Q 001022 185 KKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYN---VSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 185 ~k~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyN---vcIfAYGQTGSGKTyTM~ 237 (1186)
+..|+||..+...+ +...|..+..+.+. -|+| -.++-||++||||||.+.
T Consensus 10 ~~~~tfd~Fvvg~~-N~~a~~~~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 10 SSKYHPDEFIVSSS-NDQAYNIIKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCCchhhEeccc-HHHHHHHHHHHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 35789999776544 45577776555432 1343 458999999999999995
No 90
>PRK12704 phosphodiesterase; Provisional
Probab=89.55 E-value=52 Score=41.07 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=21.9
Q ss_pred HHHhccchhHHHHHHHhhhHHHHhHhcCcccchh
Q 001022 761 VIKAGASREHEILAEIRDAVFAFIRKMEPTRVMD 794 (1186)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1186)
.|||. |=.|+.+.++..+-.+|+..--..+++
T Consensus 278 ~i~P~--~iee~~~~~~~~~~~~~~~~ge~~~~~ 309 (520)
T PRK12704 278 RIHPA--RIEEMVEKARKEVDEEIREEGEQAVFE 309 (520)
T ss_pred CcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56655 667788888887777777665555555
No 91
>PRK06893 DNA replication initiation factor; Validated
Probab=89.40 E-value=0.26 Score=54.01 Aligned_cols=47 Identities=21% Similarity=0.331 Sum_probs=32.4
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
..++||..++.... ..+ ..+...+-+++|.+++-||++|+||||.+.
T Consensus 11 ~~~~fd~f~~~~~~-~~~----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 11 DDETLDNFYADNNL-LLL----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred CcccccccccCChH-HHH----HHHHHHhhccCCCeEEEECCCCCCHHHHHH
Confidence 56889998865532 111 122233335788889999999999999985
No 92
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=89.34 E-value=0.27 Score=61.42 Aligned_cols=51 Identities=22% Similarity=0.387 Sum_probs=37.0
Q ss_pred CceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 185 KKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 185 ~k~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
+..|+||..+-... +..+|..+..+++..-.+||. ||-||.+|+||||.+.
T Consensus 282 ~~~~TFDnFvvG~s-N~~A~aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~ 332 (617)
T PRK14086 282 NPKYTFDTFVIGAS-NRFAHAAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLH 332 (617)
T ss_pred CCCCCHhhhcCCCc-cHHHHHHHHHHHhCccccCCc-EEEECCCCCCHHHHHH
Confidence 36799998664343 445666555666654457786 8999999999999985
No 93
>PRK08084 DNA replication initiation factor; Provisional
Probab=89.27 E-value=0.25 Score=54.37 Aligned_cols=47 Identities=17% Similarity=0.353 Sum_probs=33.2
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
..|+||.-+.. .+...+..+..+... .....++-||++|+||||.+.
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~l~~~~~~---~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAALQNALRQ---EHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CcCCccccccC--ccHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHH
Confidence 56788876654 566677766555431 222478999999999999985
No 94
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=89.25 E-value=37 Score=38.83 Aligned_cols=33 Identities=21% Similarity=0.514 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 59 QALSTKVQRLKDEIKFVKEDYLELRQEATDLQE 91 (1186)
Q Consensus 59 ~~l~~~v~~Lk~~l~~~~~~~~~Lr~e~~d~q~ 91 (1186)
+.|..++...=++|..+..++..|..++..+..
T Consensus 7 ~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~ 39 (312)
T PF00038_consen 7 QSLNDRLASYIEKVRFLEQENKRLESEIEELRE 39 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence 456677777777777777777777766655443
No 95
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=89.20 E-value=31 Score=43.44 Aligned_cols=32 Identities=22% Similarity=0.081 Sum_probs=22.6
Q ss_pred ccccccccchhhhHHHHhhhhcchhhhhhhhc
Q 001022 887 WRHQVTGGKLREIQEEAKSFATGNKALAALFV 918 (1186)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 918 (1186)
.+.|-++|-+--++----.|-+|||+.+.+|.
T Consensus 569 ~~k~~~l~~~~~~~~s~~r~~l~nk~~r~~~~ 600 (629)
T KOG0963|consen 569 ERKYKRLGSFERITLSLGRTLLFNKMTRTLFF 600 (629)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666778999999988764
No 96
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=89.07 E-value=25 Score=45.74 Aligned_cols=119 Identities=19% Similarity=0.287 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhHHHhHHHHHHHHHH---HHHHHH
Q 001022 476 ANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIE---KEQNAQ 552 (1186)
Q Consensus 476 ~~~~~~el~~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~qk~~k~~~elq~~L~se~~~L~ek~k~e---kE~~~q 552 (1186)
++.+..++...+.++..++.++..+.............+...+........-++.++..-...+..++... ...+..
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~ 368 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEK 368 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555444444443333333333333333332333333444333333333222221 112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 553 LRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1186)
Q Consensus 553 L~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLke 594 (1186)
+......+.....+++..+...+.+|..|+.+|+.|+..+++
T Consensus 369 ~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~e 410 (775)
T PF10174_consen 369 LQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLRE 410 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334456666666777777777777777766543
No 97
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.00 E-value=11 Score=48.41 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 569 MQIQQRDSTIKTLQAKINSIESQRNE 594 (1186)
Q Consensus 569 ~qiqq~e~eIe~LqqeIeeLe~qLke 594 (1186)
..+.....+++.|..+.+.+..++++
T Consensus 737 eel~a~~~e~k~l~~~q~~l~~~L~k 762 (970)
T KOG0946|consen 737 EELNAALSENKKLENDQELLTKELNK 762 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555666666666666666644
No 98
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=88.98 E-value=41 Score=39.37 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001022 484 YEREKEIQDLKQEILGLRQA 503 (1186)
Q Consensus 484 ~~le~eI~eLkeEI~~Lr~~ 503 (1186)
..++.+...|+.|...|+..
T Consensus 170 k~LEeEN~~LR~Ea~~L~~e 189 (306)
T PF04849_consen 170 KSLEEENEQLRSEASQLKTE 189 (306)
T ss_pred HHHHHHHHHHHHHHHHhhHH
Confidence 34444444455554444443
No 99
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.95 E-value=49 Score=38.01 Aligned_cols=13 Identities=23% Similarity=0.457 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 001022 577 TIKTLQAKINSIE 589 (1186)
Q Consensus 577 eIe~LqqeIeeLe 589 (1186)
...+|+..++.|+
T Consensus 177 l~~e~e~~~~~L~ 189 (265)
T COG3883 177 LQNELETQLNSLN 189 (265)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 100
>PRK07952 DNA replication protein DnaC; Validated
Probab=88.95 E-value=0.33 Score=54.25 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=36.0
Q ss_pred eeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccccc
Q 001022 187 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG 238 (1186)
Q Consensus 187 ~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 238 (1186)
..+||.-...+..|..++..+..+++.+..|++ .++-||.+|+||||.+.+
T Consensus 68 ~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~-~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSKARQYVEEFDGNIA-SFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CCccccccCCCchHHHHHHHHHHHHHhhccCCc-eEEEECCCCCCHHHHHHH
Confidence 345665443345677788777777777655543 688999999999999853
No 101
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=88.92 E-value=27 Score=47.64 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 001022 577 TIKTLQAKINSIESQRNEALHS 598 (1186)
Q Consensus 577 eIe~LqqeIeeLe~qLke~l~s 598 (1186)
.|..|+++|+.|+.+++.....
T Consensus 772 ~I~~l~~~i~~L~~~l~~ie~~ 793 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELKRIEER 793 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777777777666543333
No 102
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=88.78 E-value=17 Score=46.66 Aligned_cols=11 Identities=36% Similarity=0.833 Sum_probs=7.7
Q ss_pred HHHHHHhhccc
Q 001022 928 QIRSWLAENFE 938 (1186)
Q Consensus 928 ~~~~~~~~~~~ 938 (1186)
.+-+||||.=.
T Consensus 688 ~Le~~laekR~ 698 (1265)
T KOG0976|consen 688 HLEGWLAEKRN 698 (1265)
T ss_pred HHHHHHhhhhh
Confidence 36788888554
No 103
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=88.56 E-value=19 Score=45.16 Aligned_cols=34 Identities=29% Similarity=0.341 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 477 NDARKELYEREKEIQDLKQEILGLRQALKEANDQ 510 (1186)
Q Consensus 477 ~~~~~el~~le~eI~eLkeEI~~Lr~~L~~~~~q 510 (1186)
+-...++......|..|+.|+..|+.++..++..
T Consensus 238 ~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~ 271 (629)
T KOG0963|consen 238 SLIMTELEDAQQRIVFLEREVEQLREQLAKANSS 271 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3344566677788888888888888888766543
No 104
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.54 E-value=0.22 Score=57.30 Aligned_cols=30 Identities=30% Similarity=0.403 Sum_probs=27.0
Q ss_pred HHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 208 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
.|++..+++--++.|+.-|+||||||.||-
T Consensus 114 P~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 114 PPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 577788889999999999999999999983
No 105
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.50 E-value=33 Score=42.55 Aligned_cols=126 Identities=19% Similarity=0.216 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 481 KELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQL 560 (1186)
Q Consensus 481 ~el~~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~qk~~k~~~elq~~L~se~~~L~ek~k~ekE~~~qL~~ql~qL 560 (1186)
.+++...++.++|++.+..|+.++.+...+...+.+++-..-.....++..|+...+.+ +..+|+...+..++.+-
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIal----EqkkEec~kme~qLkkA 406 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAL----EQKKEECSKMEAQLKKA 406 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 45566677777777778778777777666665555554433333333444555444443 33455555555555554
Q ss_pred HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCC
Q 001022 561 LQLEQ------EQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPM 610 (1186)
Q Consensus 561 l~~ee------E~k~qiqq~e~eIe~LqqeIeeLe~qLke~l~s~s~~~~~r~e~~ 610 (1186)
-+... +...++++++.++..|+.+....-.+..+.+.--..+.+.+....
T Consensus 407 h~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneKnDkd 462 (654)
T KOG4809|consen 407 HNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKD 462 (654)
T ss_pred HHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 43332 456778888888888887776655555554444444444444333
No 106
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.47 E-value=28 Score=45.72 Aligned_cols=19 Identities=37% Similarity=0.233 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHHHhhcCCC
Q 001022 313 NPLEFSKVLKSAFQSRGND 331 (1186)
Q Consensus 313 S~~E~~~lL~~g~~~R~~~ 331 (1186)
+-.+++.+|..+.-.|++.
T Consensus 117 tk~evvnLLESAGFSrsNP 135 (1200)
T KOG0964|consen 117 TKGEVVNLLESAGFSRSNP 135 (1200)
T ss_pred cHHHHHHHHHhcCcccCCC
Confidence 4578899998876655543
No 107
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.32 E-value=32 Score=47.27 Aligned_cols=28 Identities=11% Similarity=0.124 Sum_probs=18.1
Q ss_pred hHHHHHHHhhhHHHHhHhcCcccchhhh
Q 001022 769 EHEILAEIRDAVFAFIRKMEPTRVMDTM 796 (1186)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1186)
.++=+.||-.-+-.+.++.=+..+.|+.
T Consensus 1135 ~~~~~~~~n~~~~~~w~~~~~~~~~~~i 1162 (1311)
T TIGR00606 1135 HSMKMEEINKIIRDLWRSTYRGQDIEYI 1162 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccHHHHh
Confidence 3455677777777777766666666654
No 108
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=88.22 E-value=47 Score=43.98 Aligned_cols=28 Identities=36% Similarity=0.359 Sum_probs=15.6
Q ss_pred chhhhHH--hhhhhhh-------ccCCCCCCCCchhh
Q 001022 954 QLELLST--AIMDGWM-------AGLGGAVPPSTDAL 981 (1186)
Q Consensus 954 ~~~~~~~--~~~~~~~-------~~~~~~~~~~~~~~ 981 (1186)
+.+.+|| -.++|.| +-+|.+-||.+-||
T Consensus 897 ~h~~ls~qn~eLs~~~~~~sdq~~~l~kd~p~~cgal 933 (1195)
T KOG4643|consen 897 QHEILSTQNKELSQRALHDSDQYHLLGKDFPDQCGAL 933 (1195)
T ss_pred hhhhhhhhhHHHHHHHHhcccchhhhCCCCchHHHhh
Confidence 5555554 2455554 34666777765555
No 109
>PRK03918 chromosome segregation protein; Provisional
Probab=88.10 E-value=75 Score=41.50 Aligned_cols=14 Identities=36% Similarity=0.581 Sum_probs=11.9
Q ss_pred EeeccCCCCccccc
Q 001022 223 FAYGQTHSGKTHTM 236 (1186)
Q Consensus 223 fAYGQTGSGKTyTM 236 (1186)
+-+|++|||||..+
T Consensus 27 ~i~G~nG~GKStil 40 (880)
T PRK03918 27 LIIGQNGSGKSSIL 40 (880)
T ss_pred EEEcCCCCCHHHHH
Confidence 37899999999765
No 110
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.02 E-value=41 Score=43.96 Aligned_cols=78 Identities=18% Similarity=0.211 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCc-------hhHHHHHHHHHHHHHHH
Q 001022 570 QIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMD-------SSAVSKKLEEELKKRDA 642 (1186)
Q Consensus 570 qiqq~e~eIe~LqqeIeeLe~qLke~l~s~s~~~~~r~e~~~~s~s~~~~~~e~~d-------~~~~~kKLEEeLkkrd~ 642 (1186)
.+.+++.+|..+++....|..++.+.-......... +.-.+....++.| .-...+.+|.+|+.-+-
T Consensus 519 t~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseee-------s~q~~s~~~et~dyk~~fa~skayaraie~QlrqiEv 591 (1243)
T KOG0971|consen 519 TVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEE-------SQQPPSVDPETFDYKIKFAESKAYARAIEMQLRQIEV 591 (1243)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH-------hcCCCCCchhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344556777777777777777665533221111100 0000111122222 23356777888877777
Q ss_pred HHHHHHHHHHHH
Q 001022 643 LIERLHEENEKL 654 (1186)
Q Consensus 643 lIe~l~ee~ekl 654 (1186)
..++-|-++=+.
T Consensus 592 ~~a~rh~~~l~A 603 (1243)
T KOG0971|consen 592 AQANRHMSLLTA 603 (1243)
T ss_pred HHHHHHHHHHHH
Confidence 777777665443
No 111
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=87.95 E-value=1.1 Score=52.21 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.9
Q ss_pred EEEEeeccCCCCccccc
Q 001022 220 VSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 220 vcIfAYGQTGSGKTyTM 236 (1186)
..|+-||++|+|||++.
T Consensus 157 ~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLA 173 (364)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45888999999999887
No 112
>PRK04863 mukB cell division protein MukB; Provisional
Probab=87.90 E-value=27 Score=48.50 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 629 VSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 629 ~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
....||..+..++..|+.+.+.++++...++..
T Consensus 1075 ~~~~~~~~~~~re~EIe~L~kkL~~~~~e~~~~ 1107 (1486)
T PRK04863 1075 RRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEM 1107 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888888888888888877776555
No 113
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=87.88 E-value=0.33 Score=58.39 Aligned_cols=50 Identities=24% Similarity=0.452 Sum_probs=35.7
Q ss_pred CceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 185 KKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 185 ~k~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
+..|+||.-+.. .++...|..+..+.++ -..||. +|-||++|+||||.+.
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHAALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCCcccccccC-CchHHHHHHHHHHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence 467999997643 4456677665555543 123675 9999999999999984
No 114
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=87.88 E-value=29 Score=46.58 Aligned_cols=32 Identities=38% Similarity=0.510 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 628 AVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 628 ~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
+...++|.+++.-++..+..-.|++.+ ||+.+
T Consensus 667 ~~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~ 698 (1317)
T KOG0612|consen 667 ALEIKLERKLKMLQNELEQENAEHHRL--RLQDK 698 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhH
Confidence 466678888888887777777777776 55555
No 115
>PRK05642 DNA replication initiation factor; Validated
Probab=87.76 E-value=0.38 Score=52.97 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=31.3
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
..|+||.-+... +...+..+..+.+..-+.-+..++-||.+|+||||-+.
T Consensus 14 ~~~tfdnF~~~~--~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 14 DDATFANYYPGA--NAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CcccccccCcCC--hHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHH
Confidence 568999977432 34444444433332212123468899999999999984
No 116
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.75 E-value=48 Score=36.44 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 001022 489 EIQDLKQEILGLRQAL 504 (1186)
Q Consensus 489 eI~eLkeEI~~Lr~~L 504 (1186)
.|..|++++..++...
T Consensus 28 lIksLKeei~emkk~e 43 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKE 43 (201)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555443
No 117
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.70 E-value=49 Score=43.86 Aligned_cols=20 Identities=20% Similarity=0.393 Sum_probs=10.0
Q ss_pred ChhhHHhchHHhHhhhcCCc
Q 001022 199 GQAELFSDVQPFVQSALDGY 218 (1186)
Q Consensus 199 sQeeVFeeV~PLV~svLdGy 218 (1186)
.+...|+....+++++..|.
T Consensus 368 ~~s~~~e~~e~~~eslt~G~ 387 (1174)
T KOG0933|consen 368 EDSKLLEKAEELVESLTAGL 387 (1174)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 34444444555555555544
No 118
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=87.65 E-value=39 Score=41.34 Aligned_cols=61 Identities=23% Similarity=0.246 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 001022 567 QKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIER 646 (1186)
Q Consensus 567 ~k~qiqq~e~eIe~LqqeIeeLe~qLke~l~s~s~~~~~r~e~~~~s~s~~~~~~e~~d~~~~~kKLEEeLkkrd~lIe~ 646 (1186)
+.+.+...+.-|.+|++.+..++.+|..... .....+..-|+++.+.+..++.
T Consensus 485 Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s---------------------------~~~~~ke~~e~e~~a~~~E~ek 537 (622)
T COG5185 485 LEEDIKNLKHDINELTQILEKLELELSEANS---------------------------KFELSKEENERELVAQRIEIEK 537 (622)
T ss_pred HHHHhhhHHhHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHhhHHHHHHHHHHHHH
Confidence 3445556666777777777777766632111 1222333457778888888888
Q ss_pred HHHHHHHH
Q 001022 647 LHEENEKL 654 (1186)
Q Consensus 647 l~ee~ekl 654 (1186)
++.++.++
T Consensus 538 lE~el~~l 545 (622)
T COG5185 538 LEKELNDL 545 (622)
T ss_pred HHHHHHHh
Confidence 88888776
No 119
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=87.63 E-value=0.38 Score=56.90 Aligned_cols=51 Identities=22% Similarity=0.360 Sum_probs=34.6
Q ss_pred CceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 185 KKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 185 ~k~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
+..|+||.... ...+...|..+..+...--..||. ++-||++|+||||.+.
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~~~~~~~~~~~~~n~-l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYNP-LFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCCccccccc-CCcHHHHHHHHHHHHhCcCccCCe-EEEECCCCCcHHHHHH
Confidence 46799998443 345566776665555542223454 7789999999999984
No 120
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=87.55 E-value=47 Score=42.31 Aligned_cols=45 Identities=27% Similarity=0.302 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 545 IEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1186)
Q Consensus 545 ~ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe 589 (1186)
.+|+++.++.+....+-+.+.++...++-.......|..++.+++
T Consensus 164 eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~ 208 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQ 208 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554444444444333333334444444444
No 121
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=87.48 E-value=3.7 Score=46.53 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=14.0
Q ss_pred ccEEEEeeccCCCCcccc
Q 001022 218 YNVSIFAYGQTHSGKTHT 235 (1186)
Q Consensus 218 yNvcIfAYGQTGSGKTyT 235 (1186)
.--.++-||+.|+|||..
T Consensus 180 QPKGvlLygppgtGktLl 197 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLL 197 (404)
T ss_pred CCcceEEecCCCCchhHH
Confidence 334588999999999854
No 122
>PRK08116 hypothetical protein; Validated
Probab=87.41 E-value=0.26 Score=55.58 Aligned_cols=51 Identities=18% Similarity=0.331 Sum_probs=37.3
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcC--CccEEEEeeccCCCCcccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALD--GYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~PLV~svLd--GyNvcIfAYGQTGSGKTyTM~ 237 (1186)
..++||.-. .+..+...|..+...++++.. ..|..++-||.+|+||||.+.
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred Hhcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 456777644 455666677777777777653 345679999999999999985
No 123
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=87.11 E-value=29 Score=42.80 Aligned_cols=90 Identities=10% Similarity=0.105 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccC
Q 001022 541 DKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTT 620 (1186)
Q Consensus 541 ek~k~ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLke~l~s~s~~~~~r~e~~~~s~s~~~~~ 620 (1186)
.+.....+.+....+++....+....+-.++..++.++..+.-+.+++...|.
T Consensus 212 ~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq--------------------------- 264 (596)
T KOG4360|consen 212 TQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQ--------------------------- 264 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---------------------------
Confidence 33344444444444444444444444455666666677777777777766552
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 621 GDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 621 ~e~~d~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
......++|+.|++.-++.-+.+++.++.-.+.|...
T Consensus 265 ----~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 265 ----AYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred ----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2334456788888888888888888887777777766
No 124
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=87.10 E-value=0.45 Score=50.89 Aligned_cols=47 Identities=28% Similarity=0.552 Sum_probs=34.1
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
..|+||.... ..+..+++.+..++. .+....|+-||++|+||||...
T Consensus 10 ~~~~~~~~~~--~~~~~~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 10 DDPTFDNFYA--GGNAELLAALRQLAA---GKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CchhhcCcCc--CCcHHHHHHHHHHHh---cCCCCeEEEECCCCCCHHHHHH
Confidence 5578888773 255666666655543 4566789999999999999883
No 125
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=87.08 E-value=42 Score=35.04 Aligned_cols=55 Identities=11% Similarity=0.206 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 538 MLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 538 ~L~ek~k~ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
.+..++..+.+.+.+....+.....+..+......+++.....|+.+...++..+
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ 131 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKY 131 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555555555544
No 126
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=87.05 E-value=71 Score=39.91 Aligned_cols=87 Identities=24% Similarity=0.384 Sum_probs=50.6
Q ss_pred CCCcccccCCCCCCCCCCccccCCCcccccCCCeEEEeccCccccccCCchhhHHHhhhCCCCcccccchhhccchhhHH
Q 001022 675 NVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLL 754 (1186)
Q Consensus 675 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (1186)
.|-++=+||.+.|....-. ..---|-.|.|.++|. |..|||=--| ||
T Consensus 214 ~~kgriigreGrnir~~e~-~tgvd~iiddtp~~v~---------------------ls~fdp~rre----ia------- 260 (514)
T TIGR03319 214 EMKGRIIGREGRNIRALET-LTGVDLIIDDTPEAVI---------------------LSGFDPVRRE----IA------- 260 (514)
T ss_pred hhhccccCCCcchHHHHHH-HhCceEEEcCCCCeEE---------------------ecCCchHHHH----HH-------
Confidence 6777778888777655331 1011122333333332 5678885433 11
Q ss_pred HHHHHHHHHhc---cchhHHHHHHHhhhHHHHhHhcCcccchh
Q 001022 755 MLVLAAVIKAG---ASREHEILAEIRDAVFAFIRKMEPTRVMD 794 (1186)
Q Consensus 755 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1186)
-+.|--+|.=| .+|=.|+.+..+.-|...|++.-..-||+
T Consensus 261 ~~~l~~li~dgrihp~riee~~~~~~~~~~~~i~~~g~~~~~~ 303 (514)
T TIGR03319 261 RMALEKLIQDGRIHPARIEEMVEKATKEVDNAIREEGEQAAFD 303 (514)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12233334433 35667888888999999998888888887
No 127
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.81 E-value=29 Score=40.51 Aligned_cols=52 Identities=10% Similarity=0.169 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 543 HKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1186)
Q Consensus 543 ~k~ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLke 594 (1186)
+...+.++.++...+........+++.++++.+..|+.+..+..++..++.+
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e 262 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555666666666666666666666666654
No 128
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=86.75 E-value=0.44 Score=57.27 Aligned_cols=51 Identities=22% Similarity=0.374 Sum_probs=35.0
Q ss_pred CceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 185 KKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 185 ~k~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
...|+||.-.. ...+...|..+..+.+.--..|| .++-||++|+||||.+.
T Consensus 116 ~~~~tfd~fv~-g~~n~~a~~~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 116 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CCCCccccccc-CCCcHHHHHHHHHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence 46789998443 23556677766665554323455 47889999999999984
No 129
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.52 E-value=0.36 Score=58.72 Aligned_cols=31 Identities=29% Similarity=0.224 Sum_probs=26.9
Q ss_pred HHhHhhhcCCccEEEEeeccCCCCccccccc
Q 001022 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTMEG 238 (1186)
Q Consensus 208 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 238 (1186)
...+..++..-++.|+.-|+||||||.||+.
T Consensus 247 ~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 247 LARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 4556777888999999999999999999964
No 130
>PRK00106 hypothetical protein; Provisional
Probab=86.41 E-value=52 Score=41.32 Aligned_cols=88 Identities=24% Similarity=0.363 Sum_probs=49.9
Q ss_pred CCCcccccCCCCCCCCCCccccCCCcccccCCCeEEEeccCccccccCCchhhHHHhhhCCCCcccccchhhccchhhHH
Q 001022 675 NVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVALVKSSSEKIKTTPAGEYLTAALNDFNPEQYDNLAVISDGANKLL 754 (1186)
Q Consensus 675 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (1186)
.|-++=+||.+.|....-. .----|-.|.|.++|. |..|||=--| ||
T Consensus 235 emkGriIGreGrNir~~E~-~tGvdliiddtp~~v~---------------------lS~fdpvRRe----iA------- 281 (535)
T PRK00106 235 NMKGRIIGREGRNIRTLES-LTGIDVIIDDTPEVVV---------------------LSGFDPIRRE----IA------- 281 (535)
T ss_pred HhhcceeCCCcchHHHHHH-HhCceEEEcCCCCeEE---------------------EeCCChHHHH----HH-------
Confidence 5677777887776654331 1011122333333332 5678885443 22
Q ss_pred HHHHHHHHHhc---cchhHHHHHHHhhhHHHHhHhcCcccchhh
Q 001022 755 MLVLAAVIKAG---ASREHEILAEIRDAVFAFIRKMEPTRVMDT 795 (1186)
Q Consensus 755 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1186)
.+.|--.|.=| .+|=.|+....+.-|..+|++.--..|+|.
T Consensus 282 r~~le~Li~dgrIhp~rIEe~v~k~~~e~~~~i~~~Ge~a~~~l 325 (535)
T PRK00106 282 RMTLESLIKDGRIHPARIEELVEKNRLEMDNRIREYGEAAAYEI 325 (535)
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 22344444444 356678888888888888887766666664
No 131
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.36 E-value=27 Score=45.14 Aligned_cols=11 Identities=36% Similarity=0.788 Sum_probs=6.5
Q ss_pred CEEEEEeeCCC
Q 001022 145 NIKVFCRTRPL 155 (1186)
Q Consensus 145 nIRVf~RVRPl 155 (1186)
...+.||.=|+
T Consensus 126 ~~~i~Crt~~v 136 (717)
T PF10168_consen 126 KKEINCRTVPV 136 (717)
T ss_pred CcceeEEEEEe
Confidence 34566776664
No 132
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=86.32 E-value=54 Score=46.15 Aligned_cols=33 Identities=27% Similarity=0.544 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 629 VSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 629 ~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
-..+|+++|...+.+|+.+.+++..+...+.++
T Consensus 1315 ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~q 1347 (1822)
T KOG4674|consen 1315 EISRLKEELEEKENLIAELKKELNRLQEKIKKQ 1347 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788888888888888888888877444443
No 133
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=86.06 E-value=1.6 Score=51.80 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=15.0
Q ss_pred cEEEEeeccCCCCccccc
Q 001022 219 NVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 219 NvcIfAYGQTGSGKTyTM 236 (1186)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 345888999999999876
No 134
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=86.05 E-value=62 Score=43.89 Aligned_cols=44 Identities=18% Similarity=0.033 Sum_probs=27.0
Q ss_pred hHHHHH--HHHhhcccccccccC----CCCCCcccchhhhHHhhhhhhhc
Q 001022 925 LQRQIR--SWLAENFEFLSVTGD----DASGGTTGQLELLSTAIMDGWMA 968 (1186)
Q Consensus 925 ~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 968 (1186)
++|+++ .|+.==+-|++++++ ....++-|++=.+-..++=.|+.
T Consensus 598 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~lgr~~~i~~~~~l~~~~ 647 (1109)
T PRK10929 598 AMRYYLLSIGLIVPLIMALITFDNLNDREFSGTLGRLCFILLCGALSLVT 647 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHHHHHHHH
Confidence 344444 255433444555554 55677889998888877766664
No 135
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=85.82 E-value=54 Score=40.58 Aligned_cols=110 Identities=15% Similarity=0.209 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHhHHhhhHHHhHHHHHHHHHHHHHHHHHH
Q 001022 479 ARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLY----NEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLR 554 (1186)
Q Consensus 479 ~~~el~~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~----~E~qk~~k~~~elq~~L~se~~~L~ek~k~ekE~~~qL~ 554 (1186)
+...+...++++..|+.+..-|+.+--....+-..++ +++...-..+..++..+..+.. ....+.|.+..|-
T Consensus 164 L~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~----el~~q~Ee~skLl 239 (596)
T KOG4360|consen 164 LQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTK----ELSRQQEENSKLL 239 (596)
T ss_pred HHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3444555566666666666666554221122222222 2222111222222333332222 2223455566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 555 NQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 555 ~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
.++..+.++......+..+++..++.+.+.-.+++.++
T Consensus 240 sql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~ 277 (596)
T KOG4360|consen 240 SQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAEL 277 (596)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 66666666666666666666666666655555555544
No 136
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.76 E-value=9.9 Score=41.93 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 565 QEQKMQIQQRDSTIKTLQAKINSIES 590 (1186)
Q Consensus 565 eE~k~qiqq~e~eIe~LqqeIeeLe~ 590 (1186)
++++.+++....+++.++.+++.++.
T Consensus 142 ~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 142 QKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555543
No 137
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=85.68 E-value=74 Score=37.53 Aligned_cols=155 Identities=24% Similarity=0.177 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhH-HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 483 LYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLK-SENYMLADKHKIEKEQNAQLRNQVAQLL 561 (1186)
Q Consensus 483 l~~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~qk~~k~~~elq~~L~-se~~~L~ek~k~ekE~~~qL~~ql~qLl 561 (1186)
+.+...+...|+.|+..|++.+.++..++..+.+-+.+..-.......... .+... +-.+++.++.+..++.
T Consensus 74 L~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~-------lV~qLEk~~~q~~qLe 146 (319)
T PF09789_consen 74 LSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHERED-------LVEQLEKLREQIEQLE 146 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHH-------HHHHHHHHHHHHHHHH
Confidence 344556667777777777777777777766666544332221111111100 11222 2233344444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCchhHHHHHHHHHHHHHH
Q 001022 562 QLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRD 641 (1186)
Q Consensus 562 ~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLke~l~s~s~~~~~r~e~~~~s~s~~~~~~e~~d~~~~~kKLEEeLkkrd 641 (1186)
.-.+..-.+.++...+...|+.+.+.|..+|+-.+.....+.. +-+....=.+-|-|+|+.-+
T Consensus 147 ~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~riv-----------------DIDaLi~ENRyL~erl~q~q 209 (319)
T PF09789_consen 147 RDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIV-----------------DIDALIMENRYLKERLKQLQ 209 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc-----------------cHHHHHHHHHHHHHHHHHHH
Confidence 3333334445556667788999999998888765544433210 11112223456777777777
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 001022 642 ALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 642 ~lIe~l~ee~ekl~~rlt~k 661 (1186)
+...-...-+.|++.=+..|
T Consensus 210 eE~~l~k~~i~KYK~~le~k 229 (319)
T PF09789_consen 210 EEKELLKQTINKYKSALERK 229 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 77777777777766655533
No 138
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.67 E-value=50 Score=35.16 Aligned_cols=18 Identities=22% Similarity=0.543 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001022 487 EKEIQDLKQEILGLRQAL 504 (1186)
Q Consensus 487 e~eI~eLkeEI~~Lr~~L 504 (1186)
...+.++.+|+..++..+
T Consensus 87 ~~~l~~l~~el~~l~~~~ 104 (191)
T PF04156_consen 87 QQQLQQLQEELDQLQERI 104 (191)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 139
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=85.63 E-value=0.63 Score=50.32 Aligned_cols=48 Identities=19% Similarity=0.360 Sum_probs=32.5
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
..|+||.+++.. ...++..+..++.. .+.+..++-||.+||||||.+.
T Consensus 13 ~~~~~d~f~~~~--~~~~~~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 13 PPPTFDNFVAGE--NAELVARLRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred ChhhhcccccCC--cHHHHHHHHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 568899987322 23455555555442 2345578999999999999884
No 140
>PRK09087 hypothetical protein; Validated
Probab=85.52 E-value=0.53 Score=51.81 Aligned_cols=47 Identities=19% Similarity=0.149 Sum_probs=32.2
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
..|+||.-+..++. ..+|..+... ..-.|-.++-||++||||||.+.
T Consensus 16 ~~~~~~~Fi~~~~N-~~a~~~l~~~----~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 16 PAYGRDDLLVTESN-RAAVSLVDHW----PNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCChhceeecCch-HHHHHHHHhc----ccCCCCeEEEECCCCCCHHHHHH
Confidence 56889997764443 4477644322 22235568999999999999985
No 141
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.49 E-value=40 Score=39.45 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001022 544 KIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALH 597 (1186)
Q Consensus 544 k~ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLke~l~ 597 (1186)
+..++++.+....+....+...+.+.++++.+..|+....+..+++.++++...
T Consensus 207 ~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 207 DRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555666666677777777777777777777777765433
No 142
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=85.22 E-value=1e+02 Score=40.00 Aligned_cols=29 Identities=38% Similarity=0.486 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 633 LEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 633 LEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
|.=.|..||+.|.||.+=..-|..-.+..
T Consensus 527 L~itlrQrDaEi~RL~eLtR~LQ~Sma~l 555 (861)
T PF15254_consen 527 LGITLRQRDAEIERLRELTRTLQNSMAKL 555 (861)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567889999998887777665555444
No 143
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=85.21 E-value=1.7 Score=51.98 Aligned_cols=51 Identities=22% Similarity=0.385 Sum_probs=31.5
Q ss_pred ceeecceeeCCCCChhhHHhch-HHhHh-hhcC--C--ccEEEEeeccCCCCccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDV-QPFVQ-SALD--G--YNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV-~PLV~-svLd--G--yNvcIfAYGQTGSGKTyTM 236 (1186)
..++|+.|-+.+..-+++.+.| .|+.. ..+. | ....|+-||++|+|||+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 3467777777655555554444 34432 1222 2 2346888999999999887
No 144
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.15 E-value=25 Score=42.67 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=25.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 535 ENYMLADKHKIEKEQNAQLRNQVA----QLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1186)
Q Consensus 535 e~~~L~ek~k~ekE~~~qL~~ql~----qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe 589 (1186)
+...+.++.+.++|.+..|+..+. .+.++++..+..+...+.+|..|+..+.+|-
T Consensus 390 k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 390 KLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 333444444444444444433222 2223333344455555666666666665553
No 145
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.14 E-value=77 Score=36.49 Aligned_cols=9 Identities=33% Similarity=0.416 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 001022 495 QEILGLRQA 503 (1186)
Q Consensus 495 eEI~~Lr~~ 503 (1186)
.++..|+.+
T Consensus 80 ~eik~l~~e 88 (265)
T COG3883 80 AEIKKLQKE 88 (265)
T ss_pred HHHHHHHHH
Confidence 333333333
No 146
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=85.05 E-value=71 Score=35.81 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 482 ELYEREKEIQDLKQEILGLRQALKE 506 (1186)
Q Consensus 482 el~~le~eI~eLkeEI~~Lr~~L~~ 506 (1186)
.+..+...+.+++.+...|+..+.+
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~ 45 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEE 45 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777666666544
No 147
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=84.90 E-value=92 Score=42.73 Aligned_cols=14 Identities=14% Similarity=0.456 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHh
Q 001022 1125 QIADARRMVEVLQQ 1138 (1186)
Q Consensus 1125 ~~~~~~~~~~~~~~ 1138 (1186)
.+...+.++++|+.
T Consensus 1072 ~~~~l~~l~~~l~~ 1085 (1201)
T PF12128_consen 1072 YVNALRELLDILPS 1085 (1201)
T ss_pred HHHHHHHHHHHHhh
Confidence 45555555555555
No 148
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=84.87 E-value=0.56 Score=56.12 Aligned_cols=51 Identities=22% Similarity=0.428 Sum_probs=31.7
Q ss_pred CceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 185 KKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 185 ~k~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
+..|+||....... +...|.....+-++-=.-|| -+|-||.+|+||||-|.
T Consensus 81 ~~~ytFdnFv~g~~-N~~A~aa~~~va~~~g~~~n-plfi~G~~GlGKTHLl~ 131 (408)
T COG0593 81 NPKYTFDNFVVGPS-NRLAYAAAKAVAENPGGAYN-PLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCchhheeeCCc-hHHHHHHHHHHHhccCCcCC-cEEEECCCCCCHHHHHH
Confidence 46799998555443 44444433222222112255 47899999999999994
No 149
>PRK06835 DNA replication protein DnaC; Validated
Probab=84.76 E-value=0.33 Score=56.52 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=27.5
Q ss_pred hhHHhchHHhHhhhcCCccEEEEeeccCCCCccccccc
Q 001022 201 AELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG 238 (1186)
Q Consensus 201 eeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 238 (1186)
..+++.+...++++-.+. -.++-||+||+||||.+.+
T Consensus 166 ~~~~~~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 166 EKILEKCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 345555566888776554 5589999999999998853
No 150
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=84.76 E-value=41 Score=39.15 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 631 KKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 631 kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
.-|-+.|.+-+..+..+.-++....+-|.+|
T Consensus 147 e~LsQqLskaesK~nsLe~elh~trdaLrEK 177 (305)
T PF14915_consen 147 EILSQQLSKAESKFNSLEIELHHTRDALREK 177 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777776666666
No 151
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=84.73 E-value=0.58 Score=56.62 Aligned_cols=49 Identities=27% Similarity=0.448 Sum_probs=33.5
Q ss_pred eeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 187 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 187 ~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
.|+||.-+... ++...|..+..++.+-=..|| .+|-||.+|+||||.|.
T Consensus 111 ~~tFdnFv~g~-~n~~A~~aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIAVQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ccchhcccCCC-cHHHHHHHHHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 59999966444 455677665555543212355 47899999999999984
No 152
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=84.68 E-value=4.3 Score=46.09 Aligned_cols=72 Identities=24% Similarity=0.396 Sum_probs=43.0
Q ss_pred eecceeeCCCCChhhHHhch-HHhHhhhcC---Ccc--EEEEeeccCCCCccccccc--------------CC---CCCC
Q 001022 188 FEFDRVYGPHVGQAELFSDV-QPFVQSALD---GYN--VSIFAYGQTHSGKTHTMEG--------------SS---HDRG 244 (1186)
Q Consensus 188 FtFD~VF~p~asQeeVFeeV-~PLV~svLd---GyN--vcIfAYGQTGSGKTyTM~G--------------s~---~~~G 244 (1186)
..+..|=+-+..-++|-+.| -|+...-+- |.+ -.|+.||+.|+|||...-. +. .--|
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylg 231 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLG 231 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhc
Confidence 44455555555555666655 355544331 222 3478999999999754321 11 1135
Q ss_pred cHHHHHHHHHHhhcc
Q 001022 245 LYARCFEELFDLSNS 259 (1186)
Q Consensus 245 IIPRaledLF~~i~~ 259 (1186)
==||.++++|....+
T Consensus 232 egprmvrdvfrlake 246 (408)
T KOG0727|consen 232 EGPRMVRDVFRLAKE 246 (408)
T ss_pred cCcHHHHHHHHHHhc
Confidence 559999999987654
No 153
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=84.64 E-value=90 Score=36.66 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 483 LYEREKEIQDLKQEILGLRQALKEANDQCV 512 (1186)
Q Consensus 483 l~~le~eI~eLkeEI~~Lr~~L~~~~~q~~ 512 (1186)
+..+.+.++.|++|+..||.+.........
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~ 191 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETD 191 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 456778888888888888887665544333
No 154
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=84.63 E-value=62 Score=35.52 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001022 573 QRDSTIKTLQAKINSIESQRNE 594 (1186)
Q Consensus 573 q~e~eIe~LqqeIeeLe~qLke 594 (1186)
+...++..++.+|+.|+..+++
T Consensus 168 ~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 168 EAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555543
No 155
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=84.45 E-value=39 Score=38.44 Aligned_cols=7 Identities=29% Similarity=0.548 Sum_probs=3.2
Q ss_pred cccCCch
Q 001022 719 IKTTPAG 725 (1186)
Q Consensus 719 ~~~~~~~ 725 (1186)
+-.||+.
T Consensus 239 ~pltp~a 245 (333)
T KOG1853|consen 239 VPLTPDA 245 (333)
T ss_pred CCCCchh
Confidence 4445543
No 156
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=84.14 E-value=62 Score=38.80 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 630 SKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 630 ~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
.-.||=-|..++..|.=+.+|...|+|+|.-.
T Consensus 507 ayELEVLLRVKEsEiQYLKqEissLkDELQta 538 (593)
T KOG4807|consen 507 AYELEVLLRVKESEIQYLKQEISSLKDELQTA 538 (593)
T ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34688888999999999999999999998755
No 157
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.68 E-value=27 Score=42.16 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 550 NAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1186)
Q Consensus 550 ~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLk 593 (1186)
++.++.++...++....+...+.+...+-..-+.-+++|++++.
T Consensus 341 LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkele 384 (502)
T KOG0982|consen 341 LEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELE 384 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33344444333333333333333333333334444445555443
No 158
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=83.49 E-value=90 Score=39.91 Aligned_cols=11 Identities=18% Similarity=0.697 Sum_probs=5.4
Q ss_pred HHHHHHHHhhc
Q 001022 1130 RRMVEVLQQMR 1140 (1186)
Q Consensus 1130 ~~~~~~~~~~~ 1140 (1186)
.+++..|++|.
T Consensus 576 qqImqLL~eiQ 586 (617)
T PF15070_consen 576 QQIMQLLQEIQ 586 (617)
T ss_pred HHHHHHhHhcC
Confidence 34445555554
No 159
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=83.26 E-value=14 Score=46.14 Aligned_cols=13 Identities=15% Similarity=0.363 Sum_probs=8.0
Q ss_pred ccchhhhhhhhcc
Q 001022 869 KSKLSSVVLRMRG 881 (1186)
Q Consensus 869 ~~~~~~~~~~~~~ 881 (1186)
++-+-.++.|||-
T Consensus 489 ~rglrnifgKlrR 501 (861)
T KOG1899|consen 489 RRGLRNIFGKLRR 501 (861)
T ss_pred hhHHHHHHHHhhh
Confidence 3446667777763
No 160
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=83.09 E-value=41 Score=37.81 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=32.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 533 KSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQ 591 (1186)
Q Consensus 533 ~se~~~L~ek~k~ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~q 591 (1186)
..+.....+.++.....+..+.+.+.+...........+..+..+...|..++++++.+
T Consensus 45 ~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 45 LQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555656555555444444555555556666666666666655
No 161
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=83.08 E-value=84 Score=35.11 Aligned_cols=28 Identities=32% Similarity=0.515 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 631 KKLEEELKKRDALIERLHEENEKLFDRL 658 (1186)
Q Consensus 631 kKLEEeLkkrd~lIe~l~ee~ekl~~rl 658 (1186)
.+|+.++......|......+.++.+.+
T Consensus 200 ~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 200 KKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554444444444444444444
No 162
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=82.69 E-value=1.6e+02 Score=37.99 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=16.2
Q ss_pred HHhcChhHHHHhhhhhhhccCCCCEE
Q 001022 122 EARISPLINEKKRLFNDLLTAKGNIK 147 (1186)
Q Consensus 122 e~r~~~~~~eRkkLhN~l~elkGnIR 147 (1186)
.+.......+|-..|+-.+++.+||.
T Consensus 168 aEK~~~yE~EREET~qly~~l~~nie 193 (786)
T PF05483_consen 168 AEKMKKYEYEREETRQLYMDLNENIE 193 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 33444555667677777777777764
No 163
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=82.67 E-value=1e+02 Score=36.13 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 539 LADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1186)
Q Consensus 539 L~ek~k~ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLk 593 (1186)
+.=++..++..+.++...+.++.....+..-.+......+..|+.++..|+.+++
T Consensus 110 l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 110 LMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555444433333222344444555555555555555554
No 164
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=82.57 E-value=31 Score=38.74 Aligned_cols=33 Identities=39% Similarity=0.473 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 629 VSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 629 ~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
..++.+.+..++.+.|.++++|+..|.+.+.+.
T Consensus 68 iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 68 IIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777777777888888888887777776
No 165
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=82.52 E-value=21 Score=42.82 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=13.4
Q ss_pred HHhHhcCcccchhhhhhh
Q 001022 782 AFIRKMEPTRVMDTMLVS 799 (1186)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~ 799 (1186)
-.|+.||-|..|-.||--
T Consensus 300 kL~~e~erRealcr~lsE 317 (552)
T KOG2129|consen 300 KLINELERREALCRMLSE 317 (552)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 467788888888887753
No 166
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=82.46 E-value=64 Score=33.35 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 541 DKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIES 590 (1186)
Q Consensus 541 ek~k~ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~ 590 (1186)
.....+++++.++...+.........+..++......+...+.+++.+..
T Consensus 73 ~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 73 NDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555544444444444444444455555555555543
No 167
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.23 E-value=1e+02 Score=38.72 Aligned_cols=35 Identities=29% Similarity=0.422 Sum_probs=20.3
Q ss_pred hhhhhhhcc-------CChhhhHHHHHHHHhhcccccccccCCCCCCcccc
Q 001022 911 KALAALFVH-------TPAGELQRQIRSWLAENFEFLSVTGDDASGGTTGQ 954 (1186)
Q Consensus 911 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1186)
.-||-||-| ||. |-|-.++.|.--| .|+.+|..++
T Consensus 492 deLaqlyh~vc~~n~etp~----rvmlD~~~e~~~~-----~ds~~~~~s~ 533 (772)
T KOG0999|consen 492 DELAQLYHHVCECNNETPN----RVMLDYYRETDLR-----NDSPTGIQSP 533 (772)
T ss_pred HHHHHHHHHHHHHcCCCCc----hhhhhhhcccccc-----CCCcccccCc
Confidence 346666544 444 4455555554333 7778887776
No 168
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=82.04 E-value=63 Score=32.98 Aligned_cols=33 Identities=36% Similarity=0.526 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001022 628 AVSKKLEEELKKRDALIERLHEENEKLFDRLTE 660 (1186)
Q Consensus 628 ~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~ 660 (1186)
.-...|+.++..-+.-++.+..+|.-|.+.+..
T Consensus 98 ~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 98 EQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344567888888888888888888877776653
No 169
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.00 E-value=1e+02 Score=42.69 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 485 EREKEIQDLKQEILGLRQALKEANDQCVLL 514 (1186)
Q Consensus 485 ~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l 514 (1186)
.++.++.+|..++..++..+.....++..+
T Consensus 885 ~le~~L~el~~el~~l~~~~~~~~~~~~~~ 914 (1311)
T TIGR00606 885 QFEEQLVELSTEVQSLIREIKDAKEQDSPL 914 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334444444444444444444444433333
No 170
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=81.98 E-value=86 Score=34.45 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 001022 641 DALIERLHEENEKLFDRLTEKAS 663 (1186)
Q Consensus 641 d~lIe~l~ee~ekl~~rlt~k~~ 663 (1186)
...+..++.+++.|..++.+|..
T Consensus 170 ~~~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 170 QEEVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34457888888888888888743
No 171
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=81.77 E-value=1.1e+02 Score=43.37 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=26.1
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 618 RTTGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 618 ~~~~e~~d~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
.+...-.++-+..-++.+++.-..-.|+++.-.+.....++..+
T Consensus 381 ~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~ 424 (1822)
T KOG4674|consen 381 RPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQK 424 (1822)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333334444555666666666667777666666666666655
No 172
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=81.69 E-value=60 Score=43.30 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 626 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 626 ~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
..++..++|+.++....-+++++.++.+|-...+++
T Consensus 400 ~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~ 435 (1141)
T KOG0018|consen 400 ELERRAELEARIKQLKESVERLDKRRNKLAAKITSL 435 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888888888888877777
No 173
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.67 E-value=63 Score=39.49 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 569 MQIQQRDSTIKTLQAKINSIESQRN 593 (1186)
Q Consensus 569 ~qiqq~e~eIe~LqqeIeeLe~qLk 593 (1186)
...++.+..+..+..+|++|+.|++
T Consensus 421 ~~~e~~~~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 421 ELEEREKEALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555566666666666663
No 174
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=81.49 E-value=1.2e+02 Score=35.61 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=11.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 533 KSENYMLADKHKIEKEQNAQLRNQVAQL 560 (1186)
Q Consensus 533 ~se~~~L~ek~k~ekE~~~qL~~ql~qL 560 (1186)
..+..++.+.+..+++...++...+.++
T Consensus 61 r~~rdeineev~elK~kR~ein~kl~eL 88 (294)
T COG1340 61 REERDEINEEVQELKEKRDEINAKLQEL 88 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444443
No 175
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=81.45 E-value=0.98 Score=52.05 Aligned_cols=38 Identities=24% Similarity=0.416 Sum_probs=25.9
Q ss_pred ChhhHHhchHHhHhhhcC-CccEEEEeeccCCCCccccc
Q 001022 199 GQAELFSDVQPFVQSALD-GYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 199 sQeeVFeeV~PLV~svLd-GyNvcIfAYGQTGSGKTyTM 236 (1186)
..++-++.+...+..++. +...+++-||++|+|||+++
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 344444445445555443 45568999999999999987
No 176
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=81.36 E-value=1 Score=50.65 Aligned_cols=50 Identities=22% Similarity=0.141 Sum_probs=35.7
Q ss_pred eeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccccc
Q 001022 187 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG 238 (1186)
Q Consensus 187 ~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 238 (1186)
+|.|..+-..+..+..+|..+..+++.+-.|.| ++-||++|+||||-..+
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~n--l~l~G~~G~GKThLa~A 124 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALEDLASLVEFFERGEN--LVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CcccccccCCcchhHHHHHHHHHHHHHhccCCc--EEEECCCCCcHHHHHHH
Confidence 344444434455788888888888877775555 56799999999999853
No 177
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=81.21 E-value=1.3e+02 Score=39.80 Aligned_cols=114 Identities=18% Similarity=0.272 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh------HHhhhHHHhHHHHHHHHHHHHHHHH
Q 001022 479 ARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFT------LQSDLKSENYMLADKHKIEKEQNAQ 552 (1186)
Q Consensus 479 ~~~el~~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~qk~~k~~~e------lq~~L~se~~~L~ek~k~ekE~~~q 552 (1186)
++.-+..++..+..|+.++..-+...++...++..+.+|.........+ +.++++.+...+++++..+++...+
T Consensus 356 ar~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~ 435 (980)
T KOG0980|consen 356 ARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTE 435 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555555554444444444555544333222211 2344555666667777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 553 LRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 553 L~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
+......++.+..+...++.-.+..+.....++.+|..++
T Consensus 436 l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~l 475 (980)
T KOG0980|consen 436 LRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQL 475 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 8777777776655543333333333334444444444333
No 178
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.06 E-value=1.6e+02 Score=37.10 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 547 kE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
++.+....-++..+.+...+.+.+++..-..++.+=..++.+-..+
T Consensus 345 ~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i 390 (581)
T KOG0995|consen 345 KRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRI 390 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444544455555555544444444444444444333
No 179
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=80.79 E-value=0.91 Score=45.97 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=22.1
Q ss_pred hhhHHhchHHhHhhhcCC-ccEEEEeeccCCCCccccccc
Q 001022 200 QAELFSDVQPFVQSALDG-YNVSIFAYGQTHSGKTHTMEG 238 (1186)
Q Consensus 200 QeeVFeeV~PLV~svLdG-yNvcIfAYGQTGSGKTyTM~G 238 (1186)
|.++...+ ++.+-.+ .+.-++..++||||||++|..
T Consensus 8 Q~~ai~~i---~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 8 QQEAIARI---INSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHH---HHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHH---HHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 44444443 3333333 344455667999999999963
No 180
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=80.75 E-value=26 Score=40.90 Aligned_cols=28 Identities=36% Similarity=0.362 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 484 YEREKEIQDLKQEILGLRQALKEANDQC 511 (1186)
Q Consensus 484 ~~le~eI~eLkeEI~~Lr~~L~~~~~q~ 511 (1186)
.....++..|+.|...+.++|...+.+.
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~ 73 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKER 73 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555444433
No 181
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=80.56 E-value=1.5e+02 Score=36.31 Aligned_cols=8 Identities=63% Similarity=0.858 Sum_probs=5.0
Q ss_pred ccccccCc
Q 001022 816 LQSIMVSP 823 (1186)
Q Consensus 816 ~~~~~~~~ 823 (1186)
+|+|.|.|
T Consensus 370 ~~~i~v~~ 377 (420)
T COG4942 370 NQSILVNP 377 (420)
T ss_pred cceeeecC
Confidence 56666665
No 182
>PRK08939 primosomal protein DnaI; Reviewed
Probab=80.52 E-value=0.86 Score=52.56 Aligned_cols=52 Identities=12% Similarity=0.192 Sum_probs=35.6
Q ss_pred eeecceeeCCCCChhhHHhchHHhHhhhcCC-ccEEEEeeccCCCCccccccc
Q 001022 187 DFEFDRVYGPHVGQAELFSDVQPFVQSALDG-YNVSIFAYGQTHSGKTHTMEG 238 (1186)
Q Consensus 187 ~FtFD~VF~p~asQeeVFeeV~PLV~svLdG-yNvcIfAYGQTGSGKTyTM~G 238 (1186)
..+||.+-..+..+..++..+..+++....| ..-.++-||++|+||||.+.+
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 4566665433446666777666677766543 234689999999999999954
No 183
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.51 E-value=1e+02 Score=41.02 Aligned_cols=19 Identities=37% Similarity=0.389 Sum_probs=9.6
Q ss_pred HHHhhhhhHHHHHHHHhhc
Q 001022 385 VLHVMKSLSALGDVLSSLT 403 (1186)
Q Consensus 385 a~~INkSLsALg~VIsALa 403 (1186)
-..|.+.|.+|..-|..|-
T Consensus 686 ~~~~q~el~~le~eL~~le 704 (1174)
T KOG0933|consen 686 LRAIQKELEALERELKSLE 704 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555553
No 184
>PRK08727 hypothetical protein; Validated
Probab=80.20 E-value=1.1 Score=49.43 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=27.8
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCc-cEEEEeeccCCCCcccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGY-NVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~PLV~svLdGy-NvcIfAYGQTGSGKTyTM~ 237 (1186)
..|+||.-+...+ + ....+..+. .|+ .-.|+-||++|+||||.+.
T Consensus 14 ~~~~f~~f~~~~~-n--~~~~~~~~~----~~~~~~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 14 SDQRFDSYIAAPD-G--LLAQLQALA----AGQSSDWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CcCChhhccCCcH-H--HHHHHHHHH----hccCCCeEEEECCCCCCHHHHHH
Confidence 4578888664333 2 222222222 133 2359999999999999984
No 185
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=80.18 E-value=1.3e+02 Score=35.27 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 487 EKEIQDLKQEILGLRQALKEANDQCVLLYNEVQ 519 (1186)
Q Consensus 487 e~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~q 519 (1186)
...+.+|..++..++............+.++.|
T Consensus 157 ~~~~~el~aei~~lk~~~~e~~eki~~la~eaq 189 (294)
T COG1340 157 NEKLKELKAEIDELKKKAREIHEKIQELANEAQ 189 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555665555555555444444444443
No 186
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=79.95 E-value=1.6e+02 Score=37.98 Aligned_cols=57 Identities=25% Similarity=0.441 Sum_probs=35.5
Q ss_pred hhhhhHHHHHhhhhhhhHHHHHHHHHhhccceeeecccCCCCCCCCCchhhhhhhhhhhcHHHHHH-HHHHHHhh
Q 001022 1013 EDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSPIRNPSTAAEDARLASLISLDGILN-QVKDAVRQ 1086 (1186)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 1086 (1186)
|.+.-|-++|-.||-++|+-.-+||-|--- ---+|+-|| -|..|.++|| |+.+++++
T Consensus 901 ek~~~~p~~~~~ledL~qRy~a~LqmyGEk----------------~Ee~EELrl-Dl~dlK~mYk~QIdeLl~~ 958 (961)
T KOG4673|consen 901 EKADRVPGIKAELEDLRQRYAAALQMYGEK----------------DEELEELRL-DLVDLKEMYKEQIDELLNK 958 (961)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhcch----------------HHHHHHHHh-hHHHHHHHHHHHHHHHHhc
Confidence 345667788888888888888888766321 123555564 3555666665 45555544
No 187
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=79.86 E-value=1.5 Score=51.11 Aligned_cols=37 Identities=24% Similarity=0.436 Sum_probs=24.9
Q ss_pred hhhHHhchHHhHhhhc-CCccEEEEeeccCCCCccccc
Q 001022 200 QAELFSDVQPFVQSAL-DGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 200 QeeVFeeV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 236 (1186)
-++-++.+...+..++ .+...+++-||++|+|||+++
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 3444444544554444 345567899999999999987
No 188
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=79.84 E-value=1.2e+02 Score=34.74 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 630 SKKLEEELKKRDALIERLHEENEKL 654 (1186)
Q Consensus 630 ~kKLEEeLkkrd~lIe~l~ee~ekl 654 (1186)
...+|.+|..-...++.+..+++.|
T Consensus 264 i~~le~el~~l~~~~~~~~~ey~~L 288 (312)
T PF00038_consen 264 IAELEEELAELREEMARQLREYQEL 288 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555444
No 189
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=79.72 E-value=1.5e+02 Score=35.84 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=14.5
Q ss_pred ccccEEEeeCCCCCCHHHHHHHhHHHH
Q 001022 428 SKTLMIVNICPNAANMSETLSSLNFSS 454 (1186)
Q Consensus 428 SKTlMIv~ISPs~~~~~ETLsTLrFAs 454 (1186)
-.|.+|++|-...---.-||..|=.++
T Consensus 40 kqTAvlvtvltG~liSA~tLailf~~~ 66 (499)
T COG4372 40 KQTAVLVTVLTGMLISAATLAILFLLN 66 (499)
T ss_pred ccceeehhhhhcchhhHHHHHHHHHhh
Confidence 456677776554333345555554444
No 190
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=79.46 E-value=1.4e+02 Score=35.19 Aligned_cols=36 Identities=33% Similarity=0.416 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q 001022 632 KLEEELKKRDALIERLHEENEKLFDRLTEKASSLSSPL 669 (1186)
Q Consensus 632 KLEEeLkkrd~lIe~l~ee~ekl~~rlt~k~~~~ssp~ 669 (1186)
..++++..-...++....+++.+..++. .+.|.||.
T Consensus 243 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~--~~~i~AP~ 278 (423)
T TIGR01843 243 EVLEELTEAQARLAELRERLNKARDRLQ--RLIIRSPV 278 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcEEECCC
Confidence 3444555555555666666665544443 35677776
No 191
>PRK08181 transposase; Validated
Probab=78.87 E-value=1 Score=51.11 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=17.8
Q ss_pred CCccEEEEeeccCCCCccccccc
Q 001022 216 DGYNVSIFAYGQTHSGKTHTMEG 238 (1186)
Q Consensus 216 dGyNvcIfAYGQTGSGKTyTM~G 238 (1186)
.|+| |+-||++|+||||.+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 4665 78999999999999865
No 192
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=78.33 E-value=2.4e+02 Score=39.53 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=21.8
Q ss_pred HHHHHhhcc-CCCcccCCCC--ccccccccccCCCcc
Q 001022 396 GDVLSSLTS-RKDIVPYENS--MLTKVLADSLGESSK 429 (1186)
Q Consensus 396 g~VIsALa~-k~~hVPYRdS--KLTrLLqDSLGGNSK 429 (1186)
...|..+.. .++.++|+-. +++.+|.++|..-+.
T Consensus 183 ~~l~~~l~~lr~P~Ls~~~~~~~l~~~l~~~l~~l~~ 219 (1353)
T TIGR02680 183 AALLDLLIQLRQPQLSKKPDEGVLSDALTEALPPLDD 219 (1353)
T ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHHHHHhCCCCCH
Confidence 344444432 5566777755 599999999976443
No 193
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=78.27 E-value=16 Score=40.62 Aligned_cols=44 Identities=30% Similarity=0.379 Sum_probs=29.1
Q ss_pred CCcccccchhhccchhhHHHHHHHHHHHhccchhH--HHHHHHhhh
Q 001022 736 NPEQYDNLAVISDGANKLLMLVLAAVIKAGASREH--EILAEIRDA 779 (1186)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 779 (1186)
.|+..++.--|-+|--|..-.+|..|-=|-.|||. |-|.=|+-|
T Consensus 226 ~p~die~~~~~~~~~e~e~~i~lg~~~iaapsREdave~l~iik~a 271 (290)
T COG4026 226 APKDIEGQGYIYAEDEKEVEILLGTVYIAAPSREDAVEELEIIKEA 271 (290)
T ss_pred CchhccceeeeecccccccceeeeeeeeecCchHHHHHHHHHHHHH
Confidence 45666666666777777766677777777777777 555555554
No 194
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=78.16 E-value=2.4e+02 Score=38.47 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 634 EEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 634 EEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
|+.|..+.+.|..|+++++.+-+-+.++
T Consensus 1723 ~~~L~~~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1723 EQALEDKAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 4445555555666666666554444443
No 195
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=77.97 E-value=1.2e+02 Score=33.58 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 482 ELYEREKEIQDLKQEILGLRQALK 505 (1186)
Q Consensus 482 el~~le~eI~eLkeEI~~Lr~~L~ 505 (1186)
.+...+..-.+|..|+..|+..+.
T Consensus 30 ~ve~~ee~na~L~~e~~~L~~q~~ 53 (193)
T PF14662_consen 30 SVETAEEGNAQLAEEITDLRKQLK 53 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445544444443
No 196
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=77.90 E-value=1.3e+02 Score=39.57 Aligned_cols=26 Identities=35% Similarity=0.358 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcc
Q 001022 639 KRDALIERLHEENEKLFDRLTEKASS 664 (1186)
Q Consensus 639 krd~lIe~l~ee~ekl~~rlt~k~~~ 664 (1186)
+.+..|++++-++++.+++......+
T Consensus 511 K~~s~i~~l~I~lEk~rek~~kl~~q 536 (775)
T PF10174_consen 511 KKDSEIERLEIELEKKREKHEKLEKQ 536 (775)
T ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 44555677777777777776666444
No 197
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=77.83 E-value=97 Score=33.02 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 001022 488 KEIQDLKQEILGL 500 (1186)
Q Consensus 488 ~eI~eLkeEI~~L 500 (1186)
.++.+++..+..+
T Consensus 95 ~el~~l~~~~~~~ 107 (191)
T PF04156_consen 95 EELDQLQERIQEL 107 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 198
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.52 E-value=48 Score=42.98 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 546 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 546 ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
++-+.+++.+...++....++++.++++..+....|.+.+.-|+.+|
T Consensus 669 lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qL 715 (970)
T KOG0946|consen 669 LDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQL 715 (970)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444445555555555555666666666666666666666666
No 199
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=77.52 E-value=1.2e+02 Score=36.47 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=11.1
Q ss_pred CcccccccCCCCCCcHHHHHHHHHHhh
Q 001022 231 GKTHTMEGSSHDRGLYARCFEELFDLS 257 (1186)
Q Consensus 231 GKTyTM~Gs~~~~GIIPRaledLF~~i 257 (1186)
|+.|-..+..++|. -++..|+..+
T Consensus 57 g~~f~~p~e~DDPn---~~~~~Il~~l 80 (359)
T PF10498_consen 57 GRKFEQPQEYDDPN---ATISNILDEL 80 (359)
T ss_pred CCCCCCCcccCCHH---HHHHHHHHHH
Confidence 45555544444443 3444555444
No 200
>PRK06526 transposase; Provisional
Probab=77.46 E-value=1.2 Score=50.14 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=17.4
Q ss_pred CCccEEEEeeccCCCCccccccc
Q 001022 216 DGYNVSIFAYGQTHSGKTHTMEG 238 (1186)
Q Consensus 216 dGyNvcIfAYGQTGSGKTyTM~G 238 (1186)
.+.| |+-||++|+||||.+.+
T Consensus 97 ~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 97 GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cCce--EEEEeCCCCchHHHHHH
Confidence 3555 78899999999999864
No 201
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=77.34 E-value=2.3e+02 Score=36.63 Aligned_cols=65 Identities=18% Similarity=0.227 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhHhHHhhhHHHhHHHHHHHHHHHHHHHHHHH
Q 001022 491 QDLKQEILGLRQALKEANDQCVLLYNEVQ----KAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRN 555 (1186)
Q Consensus 491 ~eLkeEI~~Lr~~L~~~~~q~~~l~~E~q----k~~k~~~elq~~L~se~~~L~ek~k~ekE~~~qL~~ 555 (1186)
+.++.||..|...|++++..|..+.+++- ..+..+..+|.-+.+....|....+.+.+++...+.
T Consensus 608 d~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQt 676 (961)
T KOG4673|consen 608 DMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQT 676 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHH
Confidence 55777888888888888888877766552 233445556666666655665555555554443333
No 202
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=77.01 E-value=41 Score=36.37 Aligned_cols=47 Identities=17% Similarity=0.315 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 546 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 546 ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
....+..+...+..+.....++...+...+..++.+++++..|..++
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~ 160 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQL 160 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666777777777777777777777666
No 203
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=76.84 E-value=1e+02 Score=38.87 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=14.7
Q ss_pred chhhhhhhhhhhHHHHHhhhcCccc
Q 001022 792 VMDTMLVSRVRILYIRSLLARSPEL 816 (1186)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1186)
.|||=.-=+--|---|-||-..-+.
T Consensus 368 LlD~ki~Ld~EI~~YRkLLegee~r 392 (546)
T KOG0977|consen 368 LLDTKISLDAEIAAYRKLLEGEEER 392 (546)
T ss_pred hhchHhHHHhHHHHHHHHhccccCC
Confidence 4555444455566667777666555
No 204
>PRK04406 hypothetical protein; Provisional
Probab=76.83 E-value=23 Score=33.23 Aligned_cols=32 Identities=13% Similarity=0.402 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001022 631 KKLEEELKKRDALIERLHEENEKLFDRLTEKA 662 (1186)
Q Consensus 631 kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k~ 662 (1186)
..|.+.+..++..|..+..++..|.+|+.+..
T Consensus 28 e~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 28 EELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36777788889999999999999999998874
No 205
>PLN02939 transferase, transferring glycosyl groups
Probab=76.61 E-value=1.1e+02 Score=41.02 Aligned_cols=90 Identities=22% Similarity=0.203 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCc-hhH
Q 001022 553 LRNQVAQLLQLEQEQKMQIQ---QRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMD-SSA 628 (1186)
Q Consensus 553 L~~ql~qLl~~eeE~k~qiq---q~e~eIe~LqqeIeeLe~qLke~l~s~s~~~~~r~e~~~~s~s~~~~~~e~~d-~~~ 628 (1186)
+|+++..+..+......+.. -.=++.+.|+.++..|+..|.+...++-.... .+ .-.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~ 358 (977)
T PLN02939 298 WWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYK-------------------VELLQQ 358 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHH-------------------HHHHHH
Confidence 55555555544333322222 22456678999999999888765544432210 01 113
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhh
Q 001022 629 VSKKLEEELKKRDALIERLH----EENEKLFDRLTEK 661 (1186)
Q Consensus 629 ~~kKLEEeLkkrd~lIe~l~----ee~ekl~~rlt~k 661 (1186)
+-+.+|+.|.+.++.|..++ ++.+...+.+...
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (977)
T PLN02939 359 KLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKL 395 (977)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888885544 4444444444443
No 206
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=76.60 E-value=40 Score=38.09 Aligned_cols=33 Identities=33% Similarity=0.368 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001022 628 AVSKKLEEELKKRDALIERLHEENEKLFDRLTE 660 (1186)
Q Consensus 628 ~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~ 660 (1186)
....+|+++...++.....++.++......+..
T Consensus 89 ~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ 121 (246)
T PF00769_consen 89 AEIARLEEESERKEEEAEELQEELEEAREDEEE 121 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777777777777766554433
No 207
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=76.20 E-value=1.9 Score=52.35 Aligned_cols=52 Identities=25% Similarity=0.342 Sum_probs=35.5
Q ss_pred CCceeecceeeCCCCChhhHHhchHHhHhhh--cCC--ccEEEEeeccCCCCcccccc
Q 001022 184 PKKDFEFDRVYGPHVGQAELFSDVQPFVQSA--LDG--YNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 184 ~~k~FtFD~VF~p~asQeeVFeeV~PLV~sv--LdG--yNvcIfAYGQTGSGKTyTM~ 237 (1186)
-+..|+||.-... .++...|..+..+.+.. ..| ||. +|-||++|+||||.+.
T Consensus 104 l~~~~tFdnFv~g-~~N~~a~~~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 104 LDPLMTFANFLVT-PENDLPHRILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQ 159 (445)
T ss_pred CCccccccceeeC-CcHHHHHHHHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHH
Confidence 3577999996653 35556666665555433 223 554 6789999999999984
No 208
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=76.12 E-value=1.1e+02 Score=34.74 Aligned_cols=110 Identities=15% Similarity=0.284 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH---HhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 485 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTL---QSDLKSENYMLADKHKIEKEQNAQLRNQVAQLL 561 (1186)
Q Consensus 485 ~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~qk~~k~~~el---q~~L~se~~~L~ek~k~ekE~~~qL~~ql~qLl 561 (1186)
.+...+.+++++....+..|.........+..+.+........| ...+...+..|........+....|...+....
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~ 88 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAE 88 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666555544444444333322222222 223344444444433344444555666777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 562 QLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1186)
Q Consensus 562 ~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLke 594 (1186)
.....+......++.+...|+.++...+..+.+
T Consensus 89 ~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ 121 (246)
T PF00769_consen 89 AEIARLEEESERKEEEAEELQEELEEAREDEEE 121 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667777777888888888888777664443
No 209
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=76.09 E-value=1.2e+02 Score=35.85 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 636 ELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 636 eLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
.|.+|++.|-.++.....|.-++...
T Consensus 195 ml~kRQ~yI~~LEsKVqDLm~EirnL 220 (401)
T PF06785_consen 195 MLDKRQAYIGKLESKVQDLMYEIRNL 220 (401)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666665555555554444
No 210
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=75.98 E-value=1.9e+02 Score=37.53 Aligned_cols=37 Identities=30% Similarity=0.258 Sum_probs=26.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 625 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 625 d~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
++...-..++.+|..-.....++++|+++|..++...
T Consensus 584 ~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 584 QIQEQYAELELELEIEKFKRKRLEEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555666677777777788888888887776655
No 211
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=75.84 E-value=1.3e+02 Score=33.11 Aligned_cols=46 Identities=26% Similarity=0.392 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 477 NDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAW 522 (1186)
Q Consensus 477 ~~~~~el~~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~qk~~ 522 (1186)
.+....+...-.+|+.|++.+.+|+..-++..+-|-.+..+-||..
T Consensus 44 ~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgr 89 (195)
T PF10226_consen 44 KEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGR 89 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhH
Confidence 3333344444566777777777776666655555555555555443
No 212
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=75.74 E-value=1.2 Score=41.95 Aligned_cols=17 Identities=29% Similarity=0.167 Sum_probs=14.7
Q ss_pred EEeeccCCCCccccccc
Q 001022 222 IFAYGQTHSGKTHTMEG 238 (1186)
Q Consensus 222 IfAYGQTGSGKTyTM~G 238 (1186)
++.+|+||||||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 56799999999999954
No 213
>PRK12704 phosphodiesterase; Provisional
Probab=75.70 E-value=2e+02 Score=36.18 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=20.6
Q ss_pred CCCCcccccCCCCCCCCCCccccCCCcccccCCCeEEE
Q 001022 674 VNVQPRDMARNDNNNKGLPVDVAPLPLSADKTEGTVAL 711 (1186)
Q Consensus 674 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1186)
-.|-++=+||.+.|....-. ..---|-.|.|.+++.|
T Consensus 219 d~mkgriigreGrnir~~e~-~tgvd~iiddtp~~v~l 255 (520)
T PRK12704 219 DEMKGRIIGREGRNIRALET-LTGVDLIIDDTPEAVIL 255 (520)
T ss_pred chhhcceeCCCcchHHHHHH-HhCCeEEEcCCCCeEEE
Confidence 36777888888877655331 11112345556555554
No 214
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=75.68 E-value=2e+02 Score=39.21 Aligned_cols=33 Identities=24% Similarity=0.188 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 629 VSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 629 ~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
..+.||-+....+..++.+..++--|..|+.+.
T Consensus 1711 ~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~v 1743 (1758)
T KOG0994|consen 1711 RLKDLELEYLRNEQALEDKAAELAGLEKRVESV 1743 (1758)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHH
Confidence 444455555555666666777776666666554
No 215
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=75.50 E-value=1.8 Score=41.30 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=15.7
Q ss_pred ccEEEEeeccCCCCccccc
Q 001022 218 YNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 218 yNvcIfAYGQTGSGKTyTM 236 (1186)
....++-+|++|+|||+++
T Consensus 18 ~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4456888999999999876
No 216
>PRK01156 chromosome segregation protein; Provisional
Probab=75.37 E-value=2.8e+02 Score=36.67 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=13.2
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
+.+-+|++|||||..+
T Consensus 25 i~~I~G~NGsGKSsil 40 (895)
T PRK01156 25 INIITGKNGAGKSSIV 40 (895)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567899999999774
No 217
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=75.19 E-value=1.7 Score=51.40 Aligned_cols=30 Identities=40% Similarity=0.634 Sum_probs=21.0
Q ss_pred hHHhHhhhcCCccE-EEEeeccCCCCccccc
Q 001022 207 VQPFVQSALDGYNV-SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 207 V~PLV~svLdGyNv-cIfAYGQTGSGKTyTM 236 (1186)
+..++..++.|.-. .++.||.||+|||.|+
T Consensus 29 l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 29 LASFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 34444555544333 3999999999999987
No 218
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=75.17 E-value=1.5 Score=44.81 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=19.8
Q ss_pred HHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 203 LFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 203 VFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.++.+..+++....|...+++-+|.+|+|||+.+
T Consensus 8 e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 8 EIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp HHHHHHHTTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 3444555666445777888999999999999986
No 219
>PRK06921 hypothetical protein; Provisional
Probab=74.88 E-value=1.8 Score=49.01 Aligned_cols=52 Identities=23% Similarity=0.271 Sum_probs=30.9
Q ss_pred eeecceeeCCCCCh--hhHHhchHHhHhhhcC---CccEEEEeeccCCCCccccccc
Q 001022 187 DFEFDRVYGPHVGQ--AELFSDVQPFVQSALD---GYNVSIFAYGQTHSGKTHTMEG 238 (1186)
Q Consensus 187 ~FtFD~VF~p~asQ--eeVFeeV~PLV~svLd---GyNvcIfAYGQTGSGKTyTM~G 238 (1186)
.++||..-.....+ ..++..+...++++-+ +..-.++-||++|+||||.+..
T Consensus 80 ~~~F~nf~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 80 KLTFKNFKTEGKPQAIKDAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred hhhhhcCccCCccHHHHHHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 46666522111222 3355545566666532 2345688999999999999853
No 220
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=74.30 E-value=1.7 Score=49.22 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=28.0
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 189 tFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
+||.+.+ |.++.+.+..++. .|....++-||++|+|||++..
T Consensus 13 ~~~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 13 LLEDILG----QDEVVERLSRAVD---SPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred cHHHhcC----CHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHH
Confidence 4666664 5556555544443 3443357889999999999883
No 221
>PRK11281 hypothetical protein; Provisional
Probab=73.94 E-value=1.5e+02 Score=40.42 Aligned_cols=82 Identities=16% Similarity=0.152 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCchhHHHHHHHHHHHHHHHHHH
Q 001022 566 EQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIE 645 (1186)
Q Consensus 566 E~k~qiqq~e~eIe~LqqeIeeLe~qLke~l~s~s~~~~~r~e~~~~s~s~~~~~~e~~d~~~~~kKLEEeLkkrd~lIe 645 (1186)
..+.++++.+..++.|+..+++.+.+..+....+... .+........+- -.+..+..++|-++|.+.-+.+.
T Consensus 231 ~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~a~~----~~~~~~~~~~p~----i~~~~~~N~~Ls~~L~~~t~~~~ 302 (1113)
T PRK11281 231 YLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQS----QDEAARIQANPL----VAQELEINLQLSQRLLKATEKLN 302 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhcccCCChH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777788888888887766555432222111 010000000000 01133456666666666666665
Q ss_pred HHHHHHHHHH
Q 001022 646 RLHEENEKLF 655 (1186)
Q Consensus 646 ~l~ee~ekl~ 655 (1186)
.+-+++....
T Consensus 303 ~l~~~~~~~~ 312 (1113)
T PRK11281 303 TLTQQNLRVK 312 (1113)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 222
>PLN03188 kinesin-12 family protein; Provisional
Probab=73.91 E-value=66 Score=43.76 Aligned_cols=16 Identities=44% Similarity=0.499 Sum_probs=10.7
Q ss_pred eeeEEEecCCCccccc
Q 001022 359 SKLSLVDLAGSEGLIA 374 (1186)
Q Consensus 359 SkL~LVDLAGSER~~k 374 (1186)
+.+.+|-.-||+...+
T Consensus 844 ~~~~~v~~~~~~~~~~ 859 (1320)
T PLN03188 844 SNLQLVPVDGSESAEK 859 (1320)
T ss_pred ccceeeeccCcccccc
Confidence 4677777777776543
No 223
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=73.89 E-value=1.4e+02 Score=32.60 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQ 591 (1186)
Q Consensus 547 kE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~q 591 (1186)
.++...+..++.+.......++..+.+.+.+|..++.+...|...
T Consensus 97 e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar 141 (221)
T PF04012_consen 97 EEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAR 141 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444554444444445555555555555555555555443
No 224
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=73.84 E-value=1.5 Score=56.96 Aligned_cols=31 Identities=32% Similarity=0.581 Sum_probs=23.0
Q ss_pred chHHhHhhhcC--CccEEEEeeccCCCCccccc
Q 001022 206 DVQPFVQSALD--GYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 206 eV~PLV~svLd--GyNvcIfAYGQTGSGKTyTM 236 (1186)
.+..++..++. |-+.|+|-||+||+|||.|+
T Consensus 766 eLasfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 766 EVHGFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 34455555553 45567899999999999998
No 225
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=73.76 E-value=20 Score=38.51 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 57 SKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQE 91 (1186)
Q Consensus 57 ~k~~l~~~v~~Lk~~l~~~~~~~~~Lr~e~~d~q~ 91 (1186)
.-+.|.-++.+|.++++.+...|..+-.|.+.++.
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s 114 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSS 114 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667778888888888888777777777766654
No 226
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=73.70 E-value=1.4 Score=54.95 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=24.0
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
.+..++..-++.|+..|+||||||.||+
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 4566677788999999999999999985
No 227
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=73.56 E-value=1.3e+02 Score=34.67 Aligned_cols=57 Identities=21% Similarity=0.272 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 537 YMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1186)
Q Consensus 537 ~~L~ek~k~ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLk 593 (1186)
..|...+.+.+...++++.....+..-.+++.+.+....++|-.|++++++-+.++.
T Consensus 239 a~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq 295 (330)
T KOG2991|consen 239 AELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQ 295 (330)
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHH
Confidence 344455556667777777777777777777777777777788888888877775444
No 228
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=73.51 E-value=1.8e+02 Score=36.25 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=22.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 625 DSSAVSKKLEEELKKRDALIERLHEENEKL 654 (1186)
Q Consensus 625 d~~~~~kKLEEeLkkrd~lIe~l~ee~ekl 654 (1186)
|++.+-+.|=+-|=.++..++.+-.+...|
T Consensus 389 elE~rl~~lt~~Li~KQ~~lE~l~~ek~al 418 (511)
T PF09787_consen 389 ELESRLTQLTESLIQKQTQLESLGSEKNAL 418 (511)
T ss_pred hHHHHHhhccHHHHHHHHHHHHHHhhhhhc
Confidence 566777777777777788888877777766
No 229
>PRK10436 hypothetical protein; Provisional
Probab=73.46 E-value=1.4 Score=53.58 Aligned_cols=28 Identities=36% Similarity=0.293 Sum_probs=23.5
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
.+..++..-++.|+..|+||||||.||+
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 4555666778899999999999999995
No 230
>PRK10884 SH3 domain-containing protein; Provisional
Probab=72.87 E-value=53 Score=36.37 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001022 488 KEIQDLKQEILGLRQALKEAN 508 (1186)
Q Consensus 488 ~eI~eLkeEI~~Lr~~L~~~~ 508 (1186)
..+.+|+.|+..++.++.+..
T Consensus 93 ~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555443
No 231
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=72.85 E-value=1.4 Score=42.88 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=13.3
Q ss_pred cEEEEeeccCCCCccccc
Q 001022 219 NVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 219 NvcIfAYGQTGSGKTyTM 236 (1186)
+.+++.+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 467899999999999987
No 232
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=72.85 E-value=66 Score=40.71 Aligned_cols=24 Identities=8% Similarity=0.390 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 566 EQKMQIQQRDSTIKTLQAKINSIE 589 (1186)
Q Consensus 566 E~k~qiqq~e~eIe~LqqeIeeLe 589 (1186)
.++-.+.+...+++.|+.++++++
T Consensus 485 ~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 485 RLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666777776666
No 233
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=72.75 E-value=3e+02 Score=35.81 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=12.3
Q ss_pred CCccccEEEeeCCCCCCHHHHHHH
Q 001022 426 ESSKTLMIVNICPNAANMSETLSS 449 (1186)
Q Consensus 426 GNSKTlMIv~ISPs~~~~~ETLsT 449 (1186)
+++.++-|-.-++++.-....+++
T Consensus 225 ~~s~ii~Is~~~~dP~~Aa~ilN~ 248 (726)
T PRK09841 225 KESGMLELTMTGDDPQLITRILNS 248 (726)
T ss_pred CCCCeEEEEEeCCCHHHHHHHHHH
Confidence 345555555556655444444443
No 234
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=72.52 E-value=2.4e+02 Score=34.62 Aligned_cols=33 Identities=30% Similarity=0.376 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 629 VSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 629 ~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
+-++.+++-+..+++|+.+-++++-+..+--..
T Consensus 361 ~Lrrfq~ekeatqELieelrkelehlr~~kl~~ 393 (502)
T KOG0982|consen 361 ILRRFQEEKEATQELIEELRKELEHLRRRKLVL 393 (502)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334578888888899999999988886654444
No 235
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=72.52 E-value=13 Score=41.90 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=35.0
Q ss_pred ccCCHHHHHHHHHHHHhhcCCCCCCCceeEEEEEEEEEEeeccCCceeeeeeEEEecCCCccc
Q 001022 310 KVDNPLEFSKVLKSAFQSRGNDVSKFNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGL 372 (1186)
Q Consensus 310 ~V~S~~E~~~lL~~g~~~R~~~~T~SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLAGSER~ 372 (1186)
...+++++...+..+...- ..+...-|.-++.++|...+. -.|+||||+|-.+.
T Consensus 85 ~~~~~~~v~~~i~~~~~~~--~~~~~~~s~~~i~l~i~~p~~-------~~ltLIDlPGl~~~ 138 (240)
T smart00053 85 KFTDFDEVRNEIEAETDRV--TGTNKGISPVPINLRVYSPHV-------LNLTLIDLPGITKV 138 (240)
T ss_pred ccCCHHHHHHHHHHHHHHh--cCCCCcccCcceEEEEeCCCC-------CceEEEeCCCcccc
Confidence 3457778888777654321 111223466678888877653 36999999999643
No 236
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=72.37 E-value=1.5 Score=47.38 Aligned_cols=15 Identities=47% Similarity=0.722 Sum_probs=13.1
Q ss_pred EEeeccCCCCccccc
Q 001022 222 IFAYGQTHSGKTHTM 236 (1186)
Q Consensus 222 IfAYGQTGSGKTyTM 236 (1186)
+.-+|.||||||+|+
T Consensus 26 ~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTV 40 (229)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999999
No 237
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=72.35 E-value=1.7 Score=53.16 Aligned_cols=28 Identities=29% Similarity=0.242 Sum_probs=23.6
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
.+..++...++.|+..|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4555677778889999999999999995
No 238
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=72.22 E-value=1.1e+02 Score=40.55 Aligned_cols=36 Identities=19% Similarity=-0.061 Sum_probs=31.2
Q ss_pred cchhHHHHHHHhhhHHHHhHhcCcccchhhhhhhhh
Q 001022 766 ASREHEILAEIRDAVFAFIRKMEPTRVMDTMLVSRV 801 (1186)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1186)
.+|||||.+-..++.+.|.+-++-+.||--=++.+=
T Consensus 693 ~~~e~ei~~~~~~~~~~l~~~~~~ra~~~~d~~~~r 728 (913)
T KOG0244|consen 693 PSNEIEINQIALNPRGTLLYAAEERAVRMWDLKRLR 728 (913)
T ss_pred hccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999876665543
No 239
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=72.19 E-value=2.8e+02 Score=35.23 Aligned_cols=10 Identities=20% Similarity=0.448 Sum_probs=6.0
Q ss_pred HHHHHHhhcc
Q 001022 250 FEELFDLSNS 259 (1186)
Q Consensus 250 ledLF~~i~~ 259 (1186)
.+++|+.++.
T Consensus 181 ~d~v~~~i~~ 190 (607)
T KOG0240|consen 181 PDEVLDVIDE 190 (607)
T ss_pred HHHHHHHHhc
Confidence 5666766653
No 240
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=72.05 E-value=2.2 Score=43.05 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=20.2
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
++..+..|.| ++..|+||||||....
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 3445556777 6788999999999975
No 241
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=71.96 E-value=2.2e+02 Score=34.51 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 471 KWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQ 519 (1186)
Q Consensus 471 k~k~i~~~~~~el~~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~q 519 (1186)
+...+...++..+.....|..+|+.....++..+....+.+....+|.+
T Consensus 282 Kveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAq 330 (442)
T PF06637_consen 282 KVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQ 330 (442)
T ss_pred HHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666666666666666554444443444443
No 242
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=71.82 E-value=2.6e+02 Score=34.69 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=9.7
Q ss_pred HHHHHHHhHHHHHHhhc
Q 001022 443 MSETLSSLNFSSRARST 459 (1186)
Q Consensus 443 ~~ETLsTLrFAsRAR~I 459 (1186)
+.|+|..|+-.++-..+
T Consensus 315 LNEvL~kLk~tn~kQq~ 331 (527)
T PF15066_consen 315 LNEVLQKLKHTNRKQQN 331 (527)
T ss_pred HHHHHHHHHhhhHHHHH
Confidence 45666666666554443
No 243
>PF15294 Leu_zip: Leucine zipper
Probab=71.44 E-value=1.1e+02 Score=35.44 Aligned_cols=36 Identities=31% Similarity=0.318 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 485 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQK 520 (1186)
Q Consensus 485 ~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~qk 520 (1186)
-+..+|.+|+.|++.|+..+...+.+|.....|-.+
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~k 164 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSK 164 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999888888766655433
No 244
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=71.30 E-value=1.2e+02 Score=40.75 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=32.7
Q ss_pred ccCCCccccEEEeeCCCCCCHHHHHHHhHHHHHHhhcccccCc
Q 001022 423 SLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLGN 465 (1186)
Q Consensus 423 SLGGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRAR~I~~~~~n 465 (1186)
..+|.+.+.||-+-.-+...|.+.|..+.+--+||+..+-.|.
T Consensus 91 ~I~~G~seY~IDne~VT~eeY~~eLekinIlVkARNFLVFQGd 133 (1141)
T KOG0018|consen 91 AINGGTSEYMIDNEIVTREEYLEELEKINILVKARNFLVFQGD 133 (1141)
T ss_pred hhcCCceeEEEcceeccHHHHHHHHhhcceeeeeeeEEEecCh
Confidence 3446677788888777788899999999998899987654433
No 245
>PF12846 AAA_10: AAA-like domain
Probab=71.00 E-value=1.7 Score=47.74 Aligned_cols=19 Identities=37% Similarity=0.501 Sum_probs=16.2
Q ss_pred cEEEEeeccCCCCcccccc
Q 001022 219 NVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 219 NvcIfAYGQTGSGKTyTM~ 237 (1186)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567889999999999984
No 246
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=70.94 E-value=1.8 Score=40.51 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=15.6
Q ss_pred EEEEeeccCCCCcccccc
Q 001022 220 VSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 220 vcIfAYGQTGSGKTyTM~ 237 (1186)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 467889999999999984
No 247
>PRK00846 hypothetical protein; Provisional
Probab=70.87 E-value=53 Score=31.27 Aligned_cols=46 Identities=20% Similarity=0.120 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCC
Q 001022 632 KLEEELKKRDALIERLHEENEKLFDRLTEKASSLSSPLSKGSVNVQ 677 (1186)
Q Consensus 632 KLEEeLkkrd~lIe~l~ee~ekl~~rlt~k~~~~ssp~~~~~~~~~ 677 (1186)
.|.+.+.+++..|.++.+++..|.+|+.+..++...+.+-.+|++|
T Consensus 31 ~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~~~~~~dE~PPPH 76 (77)
T PRK00846 31 ELSEALADARLTGARNAELIRHLLEDLGKVRSTLFADPADEPPPPH 76 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCcCC
Confidence 5666677788888888899999999988885444333334444443
No 248
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.78 E-value=3.3e+02 Score=35.39 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccce
Q 001022 1120 PCAQRQIADARRMVEVLQQMRSDVA 1144 (1186)
Q Consensus 1120 ~~~~~~~~~~~~~~~~~~~~~~~~~ 1144 (1186)
-|-+-.|-.-|.+|.+|.-.+-|+.
T Consensus 621 ~vF~~ki~eFr~ac~sL~Gykid~~ 645 (716)
T KOG4593|consen 621 EVFASKIQEFRDACYSLLGYKIDFT 645 (716)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 3677778888888888886665543
No 249
>PRK09343 prefoldin subunit beta; Provisional
Probab=70.73 E-value=34 Score=34.69 Aligned_cols=40 Identities=25% Similarity=0.343 Sum_probs=25.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 001022 625 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKASS 664 (1186)
Q Consensus 625 d~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k~~~ 664 (1186)
|..+....++++++.-+..|+.+.++.+.+..++.+...+
T Consensus 68 d~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~ 107 (121)
T PRK09343 68 DKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAK 107 (121)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666677777777777666666665333
No 250
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=70.66 E-value=71 Score=40.42 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 483 LYEREKEIQDLKQEILGLRQALKEANDQCVLL 514 (1186)
Q Consensus 483 l~~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l 514 (1186)
+..++.++..|+.++++++..+...+.++..+
T Consensus 431 ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~ 462 (652)
T COG2433 431 VERLEEENSELKRELEELKREIEKLESELERF 462 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444333
No 251
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=70.37 E-value=1.9 Score=46.34 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=16.6
Q ss_pred cEEEEeeccCCCCcccccc
Q 001022 219 NVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 219 NvcIfAYGQTGSGKTyTM~ 237 (1186)
++.|+-.|+||||||.++.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3678999999999999984
No 252
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=70.33 E-value=2.3e+02 Score=38.76 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=25.3
Q ss_pred CCchhhhhhHHHHHH-----HHhhhhhhhhhhhhhhcccccchhhhh
Q 001022 976 PSTDALGQLLSEYAK-----RVYNSQLQHLKDIAGTLATEDAEDASQ 1017 (1186)
Q Consensus 976 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1017 (1186)
|+.|.+|--=-+|+- .-+.+..+||.-...-++.|.-.-..+
T Consensus 904 ~t~~~~g~hRqe~~~k~~t~ac~~e~~~~l~q~~~i~~~E~e~~~~~ 950 (1317)
T KOG0612|consen 904 KTKDVLGLHRQELTCKDCTLACLEETNRTLTQKCKLLSEEKERLLGK 950 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhcCCchhhhhhhhhh
Confidence 377777765555543 345667777777777666665444333
No 253
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=70.31 E-value=3.9e+02 Score=36.08 Aligned_cols=12 Identities=33% Similarity=0.562 Sum_probs=9.9
Q ss_pred eccCCCCccccc
Q 001022 225 YGQTHSGKTHTM 236 (1186)
Q Consensus 225 YGQTGSGKTyTM 236 (1186)
.|..||||+--.
T Consensus 31 VGrNGSGKSNFF 42 (1200)
T KOG0964|consen 31 VGRNGSGKSNFF 42 (1200)
T ss_pred ecCCCCCchhhH
Confidence 489999998665
No 254
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=69.96 E-value=1.2e+02 Score=40.37 Aligned_cols=35 Identities=23% Similarity=0.181 Sum_probs=20.2
Q ss_pred hhhhhhhhhhhcccccchhhhhHHHHHhhhhhhhH
Q 001022 996 QLQHLKDIAGTLATEDAEDASQVSKLRSALESVDH 1030 (1186)
Q Consensus 996 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1186)
++|-|+---..+-++.++-..++.|.|+.||-++.
T Consensus 637 ~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~ 671 (1072)
T KOG0979|consen 637 EIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQK 671 (1072)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33434433344555666666777777777766543
No 255
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=69.84 E-value=2.2 Score=49.76 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=20.8
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
.+..++.-..+.|+-.|+||||||.||.
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 3344444345779999999999999994
No 256
>PRK10865 protein disaggregation chaperone; Provisional
Probab=69.81 E-value=9.6 Score=49.98 Aligned_cols=45 Identities=29% Similarity=0.297 Sum_probs=28.3
Q ss_pred eecceeeCCCCChhhHHhchHHhHhhhcCCcc------EEEEeeccCCCCccccc
Q 001022 188 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYN------VSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 188 FtFD~VF~p~asQeeVFeeV~PLV~svLdGyN------vcIfAYGQTGSGKTyTM 236 (1186)
.-+.+|++ |...-..|...|..+..|.+ ++++-+|+||+|||++.
T Consensus 565 ~l~~~viG----Q~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 565 ELHHRVIG----QNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred HhCCeEeC----CHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 44667776 44444444444444433322 57888899999999976
No 257
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=69.79 E-value=34 Score=36.99 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001022 487 EKEIQDLKQEILGLRQA 503 (1186)
Q Consensus 487 e~eI~eLkeEI~~Lr~~ 503 (1186)
+..+..++.|+..+...
T Consensus 73 e~~~~~l~~ELael~r~ 89 (194)
T PF08614_consen 73 EQKLAKLQEELAELYRS 89 (194)
T ss_dssp -----------------
T ss_pred ccccccccccccccccc
Confidence 33444444444444443
No 258
>PF13245 AAA_19: Part of AAA domain
Probab=69.66 E-value=2.1 Score=39.64 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=17.8
Q ss_pred HhhhcCCccEEEEeeccCCCCcccccc
Q 001022 211 VQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 211 V~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
|..++. -+..+.-.|+.|||||+|+.
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 344455 33345558999999999983
No 259
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=69.62 E-value=3 Score=47.71 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=27.9
Q ss_pred Hhch--HHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 204 FSDV--QPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 204 FeeV--~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
|+++ .++++.+.--..+.|+-.|.|||||+.||-
T Consensus 110 ~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 110 FEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred HHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 5553 577788777788899999999999999983
No 260
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=69.61 E-value=3.6e+02 Score=35.39 Aligned_cols=100 Identities=33% Similarity=0.481 Sum_probs=57.8
Q ss_pred Hhhhhhhhhhhhhh-h------------cc---cccchh-hhhHHHHHhhhhhhhHHHHHHHHHhhccceeeecccCCCC
Q 001022 992 VYNSQLQHLKDIAG-T------------LA---TEDAED-ASQVSKLRSALESVDHRRRKVLQQMRSDVALLTLEEGGSP 1054 (1186)
Q Consensus 992 ~~~~~~~~~~~~~~-~------------~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1054 (1186)
+-..|+.||+-... | ++ ..+.|+ -.||-||||-|. -||..|-+ +|| +|.
T Consensus 549 ~irdQikhL~~av~~t~e~srq~~~~~~~~~~~d~d~e~l~eqilKLKSLLS---TKREQIaT-LRT---VLK------- 614 (717)
T PF09730_consen 549 IIRDQIKHLQRAVDRTTELSRQRVASRSSASEADKDKEELQEQILKLKSLLS---TKREQIAT-LRT---VLK------- 614 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccCCcccccHHHhHHHHHHHHHHHH---HHHHHHHH-HHH---HHH-------
Confidence 34579999984332 1 12 222232 248999999986 47777643 343 111
Q ss_pred CCCCCchhhhhhhhhhhc---------------HHHHHHHHH-HHHhhccccchhhhhHhHHHhhHHHHH
Q 001022 1055 IRNPSTAAEDARLASLIS---------------LDGILNQVK-DAVRQSSVNTLSRSKKKAMLTSLDELA 1108 (1186)
Q Consensus 1055 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1108 (1186)
-|--| | +.=||+|=| |-.=||..| |.---+|+..+++.+=-.|..-||++.
T Consensus 615 -ANKqT-A-EvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATFsSlRamFa~RCdEYvtQldemq 681 (717)
T PF09730_consen 615 -ANKQT-A-EVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATFSSLRAMFAARCDEYVTQLDEMQ 681 (717)
T ss_pred -HHHHH-H-HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01122 2 344666543 333344444 345567888888888888888888873
No 261
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=69.59 E-value=3.2e+02 Score=35.49 Aligned_cols=194 Identities=23% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 483 LYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQ 562 (1186)
Q Consensus 483 l~~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~qk~~k~~~elq~~L~se~~~L~ek~k~ekE~~~qL~~ql~qLl~ 562 (1186)
..++..+++.|++|-.+|-.+|+-. +..+..++.........-...+......+........+.+..+..++....+
T Consensus 473 ~~dL~~ELqqLReERdRl~aeLqlS---a~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~ 549 (739)
T PF07111_consen 473 VTDLSLELQQLREERDRLDAELQLS---ARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARK 549 (739)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhccccccccc-CCCCCcccccccccCCCCCchhHHHHHH
Q 001022 563 LEQEQKMQIQQRDSTIK--------TLQAKINSIESQRNEALHSSEVRSTI-RSEPMPAVSSVLRTTGDGMDSSAVSKKL 633 (1186)
Q Consensus 563 ~eeE~k~qiqq~e~eIe--------~LqqeIeeLe~qLke~l~s~s~~~~~-r~e~~~~s~s~~~~~~e~~d~~~~~kKL 633 (1186)
...+...+...+..+.. .|+.++.+++..+.+.+...+.+.+- +.+ .++..-..-.+.++.
T Consensus 550 ~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~rLNeARRE----------HtKaVVsLRQ~qrqa 619 (739)
T PF07111_consen 550 SLQESTEEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEMEKRLNEARRE----------HTKAVVSLRQIQRQA 619 (739)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHhhh--------------hccC----CCCCCC---CCCCCCcccccCCCCCC
Q 001022 634 EEELKKRDALI----ERLHEENEKLFDRLTEK--------------ASSL----SSPLSK---GSVNVQPRDMARNDNNN 688 (1186)
Q Consensus 634 EEeLkkrd~lI----e~l~ee~ekl~~rlt~k--------------~~~~----ssp~~~---~~~~~~~~~~~r~~~~~ 688 (1186)
-.+-..-.+++ +..+++-.+|..|+.++ .|+. +||... .++.++++...|.....
T Consensus 620 ~reKer~~E~~~lq~e~~~~e~~rl~~rlqelerdkNl~l~rl~~~lps~~~k~~~~~~~~~s~~~~~~~~~~~r~~~~g 699 (739)
T PF07111_consen 620 AREKERNQELRRLQEEARKEEGQRLTQRLQELERDKNLMLQRLLAVLPSLLEKESSPRPPESSKPASLPAAFPTRESTKG 699 (739)
T ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCcccccccCCCCccccCCCCCCCCCCccccCC
Q ss_pred C
Q 001022 689 K 689 (1186)
Q Consensus 689 ~ 689 (1186)
.
T Consensus 700 s 700 (739)
T PF07111_consen 700 S 700 (739)
T ss_pred C
No 262
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=69.36 E-value=1.3e+02 Score=30.04 Aligned_cols=21 Identities=19% Similarity=0.185 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001022 485 EREKEIQDLKQEILGLRQALK 505 (1186)
Q Consensus 485 ~le~eI~eLkeEI~~Lr~~L~ 505 (1186)
..+..+..-+.++..+...+.
T Consensus 11 ~~~~~l~~kr~e~~~~~~~~~ 31 (126)
T PF13863_consen 11 LVQLALDTKREEIERREEQLK 31 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 263
>PRK02119 hypothetical protein; Provisional
Probab=69.24 E-value=51 Score=30.80 Aligned_cols=33 Identities=15% Similarity=0.350 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 001022 632 KLEEELKKRDALIERLHEENEKLFDRLTEKASS 664 (1186)
Q Consensus 632 KLEEeLkkrd~lIe~l~ee~ekl~~rlt~k~~~ 664 (1186)
.|.+-+.+++..|.++..++..|.+++.+....
T Consensus 27 ~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 27 ELNQALIEQQFVIDKMQVQLRYMANKLKDMQPS 59 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 566777788888889999999999998887433
No 264
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=69.07 E-value=4.8e+02 Score=36.66 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=12.9
Q ss_pred EEeeccCCCCcccccc
Q 001022 222 IFAYGQTHSGKTHTME 237 (1186)
Q Consensus 222 IfAYGQTGSGKTyTM~ 237 (1186)
++--|++|||||.+|-
T Consensus 27 ~~~~G~NGsGKS~~ld 42 (1353)
T TIGR02680 27 LLLRGNNGAGKSKVLE 42 (1353)
T ss_pred EEEECCCCCcHHHHHH
Confidence 3456999999999883
No 265
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.76 E-value=3.2e+02 Score=34.57 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 487 EKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQE 566 (1186)
Q Consensus 487 e~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~qk~~k~~~elq~~L~se~~~L~ek~k~ekE~~~qL~~ql~qLl~~eeE 566 (1186)
++....|.++|..|+.-|....+++..+..-+.-. +. +-+..+..-.........+..+.+..+++.+..+.+--.-
T Consensus 597 dk~~e~l~~~ilklksllstkreqi~tlrtvlkan-kq--taevaltnlksKYEnEK~mvtetm~KlRnELk~Lkedaat 673 (772)
T KOG0999|consen 597 DKDKEALMEQILKLKSLLSTKREQITTLRTVLKAN-KQ--TAEVALTNLKSKYENEKAMVTETMDKLRNELKALKEDAAT 673 (772)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HH--HHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777666655444443333222111 10 0011111111222333344556666666666555322111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 567 QKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 567 ~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
....-.-+-...++|..+++++.++|
T Consensus 674 fsslramf~~R~ee~~tq~de~~~ql 699 (772)
T KOG0999|consen 674 FSSLRAMFAARCEEYVTQLDELQRQL 699 (772)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 12222223334556666777777666
No 266
>PRK00106 hypothetical protein; Provisional
Probab=68.62 E-value=3.3e+02 Score=34.55 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=16.0
Q ss_pred hhHHhhhhhhhccC-CCCCCCCchhhhhhHHHHHHH
Q 001022 957 LLSTAIMDGWMAGL-GGAVPPSTDALGQLLSEYAKR 991 (1186)
Q Consensus 957 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 991 (1186)
.+.+|++-|+||.- |. .|..-.+|-||-|.-|-
T Consensus 355 Sv~VA~lA~~lA~~lgl--d~e~a~~AGLLHDIGK~ 388 (535)
T PRK00106 355 SVEVGKLAGILAGELGE--NVALARRAGFLHDMGKA 388 (535)
T ss_pred HHHHHHHHHHHHHHhCC--CHHHHHHHHHHHhccCc
Confidence 34556666666532 21 23333445555555554
No 267
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=68.41 E-value=1.7e+02 Score=33.74 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 001022 573 QRDSTIKTLQAKINSI 588 (1186)
Q Consensus 573 q~e~eIe~LqqeIeeL 588 (1186)
.+..+...++.+|+.|
T Consensus 281 ~~~~~~~~l~~ei~~L 296 (297)
T PF02841_consen 281 GFQEEAEKLQKEIQDL 296 (297)
T ss_dssp T-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3455666666666665
No 268
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=68.30 E-value=2.6e+02 Score=33.34 Aligned_cols=117 Identities=21% Similarity=0.279 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhHHHhHHHHHHH-------HHHHHHHHH
Q 001022 480 RKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKH-------KIEKEQNAQ 552 (1186)
Q Consensus 480 ~~el~~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~qk~~k~~~elq~~L~se~~~L~ek~-------k~ekE~~~q 552 (1186)
+..+++...+.++|+-..++|..+|-...+=......+.+.... +-..+++++..++.++ ....|+..+
T Consensus 91 ~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~----li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~ 166 (401)
T PF06785_consen 91 RESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEG----LIRHLREENQCLQLQLDALQQECGEKEEESQT 166 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHH
Confidence 34445556666677777777766664433311112222222221 1222223332222111 112233334
Q ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 001022 553 LRNQVAQLLQLEQEQ-----------KMQIQQRDSTIKTLQAKINSIESQRNEALHSSE 600 (1186)
Q Consensus 553 L~~ql~qLl~~eeE~-----------k~qiqq~e~eIe~LqqeIeeLe~qLke~l~s~s 600 (1186)
|...+++.....+++ ..-+..+..-|..|+.++++|--+++..+.-.+
T Consensus 167 LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~ 225 (401)
T PF06785_consen 167 LNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQLES 225 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444444444333332 233455667788888888887766665443333
No 269
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=68.27 E-value=3.8e+02 Score=35.24 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 557 VAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1186)
Q Consensus 557 l~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLk 593 (1186)
+..-...+.-+...+.|++.+|..|+.-..-|.....
T Consensus 517 Le~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma 553 (861)
T PF15254_consen 517 LEASEKENQILGITLRQRDAEIERLRELTRTLQNSMA 553 (861)
T ss_pred HHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444566677788888777665555554443
No 270
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=67.92 E-value=2.7e+02 Score=36.28 Aligned_cols=47 Identities=9% Similarity=0.179 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1186)
Q Consensus 547 kE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLk 593 (1186)
+.+......++.++...-.+....+.........++.+++.|++.+.
T Consensus 572 q~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle 618 (698)
T KOG0978|consen 572 QIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLE 618 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555444444455555555555566666777766663
No 271
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=67.25 E-value=2 Score=45.10 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=21.2
Q ss_pred hHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 207 VQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 207 V~PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
+..+.+.+-.|.+.+++-||+.|+|||+.|
T Consensus 8 l~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 8 LEKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 344444444567888999999999999987
No 272
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=67.17 E-value=2.8 Score=49.86 Aligned_cols=20 Identities=25% Similarity=0.150 Sum_probs=17.0
Q ss_pred ccEEEEeeccCCCCcccccc
Q 001022 218 YNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 218 yNvcIfAYGQTGSGKTyTM~ 237 (1186)
.++.|+..|+||||||+||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 45578889999999999994
No 273
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=66.66 E-value=2.1e+02 Score=31.51 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 540 ADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1186)
Q Consensus 540 ~ek~k~ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLk 593 (1186)
...+..++.++.+++.+...+....+....++.+.+...+.+.+++...+.++.
T Consensus 130 e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 130 ESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555566665555555556666777777777777777777777664
No 274
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=66.57 E-value=1.8e+02 Score=31.95 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 569 MQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 569 ~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
....+++.+|..|+.+|-+|+.+.
T Consensus 124 ~~~~~~e~~i~~Le~ki~el~~~~ 147 (190)
T PF05266_consen 124 AELKELESEIKELEMKILELQRQA 147 (190)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345566777777888877777665
No 275
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=66.41 E-value=79 Score=30.16 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=18.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001022 625 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTE 660 (1186)
Q Consensus 625 d~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~ 660 (1186)
+..+....|+++.+.-+..|+.+.++.+.+..++++
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~ 94 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKE 94 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555444443
No 276
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=66.00 E-value=3 Score=49.28 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.2
Q ss_pred CccEEEEeeccCCCCcccccc
Q 001022 217 GYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 217 GyNvcIfAYGQTGSGKTyTM~ 237 (1186)
-.++.|+-.|+||||||.||.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHH
Confidence 346889999999999999984
No 277
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=65.81 E-value=3.8 Score=45.04 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=17.3
Q ss_pred cCCccEEEEeeccCCCCccccc
Q 001022 215 LDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 215 LdGyNvcIfAYGQTGSGKTyTM 236 (1186)
+......++-+|++|||||+++
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHH
Confidence 4444556788999999999887
No 278
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=65.75 E-value=5.6 Score=44.30 Aligned_cols=30 Identities=37% Similarity=0.564 Sum_probs=20.1
Q ss_pred hHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 207 VQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 207 V~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
+..++..++.+ .+.|+-.|.||||||.+|.
T Consensus 116 ~~~~l~~~v~~-~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 116 IAEFLRSAVRG-RGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp HHHHHHHCHHT-TEEEEEEESTTSSHHHHHH
T ss_pred HHHHHhhcccc-ceEEEEECCCccccchHHH
Confidence 34444444433 4456677999999999983
No 279
>PRK12705 hypothetical protein; Provisional
Probab=65.73 E-value=3.6e+02 Score=33.98 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=11.9
Q ss_pred CCCcccccCCCCCCCCC
Q 001022 675 NVQPRDMARNDNNNKGL 691 (1186)
Q Consensus 675 ~~~~~~~~r~~~~~~~~ 691 (1186)
.|-++=+||.+.|....
T Consensus 208 emkGriIGreGrNir~~ 224 (508)
T PRK12705 208 AMKGRIIGREGRNIRAF 224 (508)
T ss_pred HhhccccCccchhHHHH
Confidence 67777788887766543
No 280
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=65.49 E-value=84 Score=33.17 Aligned_cols=58 Identities=21% Similarity=0.333 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhHH
Q 001022 58 KQALSTKVQRLKDEIKFVKEDYLELRQEATDLQEY-----SNAKIDRVTRYLGVLADKTRKLD 115 (1186)
Q Consensus 58 k~~l~~~v~~Lk~~l~~~~~~~~~Lr~e~~d~q~~-----~~~~l~~v~~~l~~L~~~~~~l~ 115 (1186)
-..+..++..|++++..++.++..|+.+...+... +...+..+..++..+.++...|.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888888888888887776432 23334455555555555555443
No 281
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=65.10 E-value=3.3e+02 Score=33.35 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 001022 576 STIKTLQAKINSIESQRNEAL 596 (1186)
Q Consensus 576 ~eIe~LqqeIeeLe~qLke~l 596 (1186)
-.+..++++++.++.++++..
T Consensus 275 P~v~~l~~qi~~l~~~l~~~~ 295 (498)
T TIGR03007 275 PDVIATKREIAQLEEQKEEEG 295 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhhc
Confidence 455667777777777765443
No 282
>PHA01754 hypothetical protein
Probab=65.05 E-value=11 Score=34.17 Aligned_cols=49 Identities=37% Similarity=0.521 Sum_probs=41.8
Q ss_pred HHHHHHHhhhhhhhhhhhhhhcccccchhhhhHHHHHhhhhhhhHHHHHHHHHhhccc
Q 001022 986 SEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSKLRSALESVDHRRRKVLQQMRSDV 1043 (1186)
Q Consensus 986 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043 (1186)
-|++-..|- -|.|.|-.|||||-|..-|-.-...|+|-| ||+..||.+-
T Consensus 12 tEltAKLyl----ALdDLamaLATee~EeVRkSevfqkA~EVi-----Kvvkemrr~~ 60 (69)
T PHA01754 12 TELTAKLYL----ALDDLTMALATEDKEEVRKSEVFQKALEVV-----KVVKEMRRLQ 60 (69)
T ss_pred HHHHHHHHH----HHHHHHHHHhhcchHHHHHHHHHHHHHHHH-----HHHHHHHHcc
Confidence 356666775 699999999999999999998899999988 8999999753
No 283
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=64.80 E-value=2.4e+02 Score=34.51 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=12.2
Q ss_pred hCCCCcccccchhhccch
Q 001022 733 NDFNPEQYDNLAVISDGA 750 (1186)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~ 750 (1186)
+||||+-|--+||-.||+
T Consensus 225 ~d~d~~~~~~iAas~d~~ 242 (459)
T KOG0288|consen 225 IDFDSDNKHVIAASNDKN 242 (459)
T ss_pred eeecCCCceEEeecCCCc
Confidence 567777777777766664
No 284
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=64.65 E-value=3.8e+02 Score=33.90 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001022 484 YEREKEIQDLKQEILGLRQA 503 (1186)
Q Consensus 484 ~~le~eI~eLkeEI~~Lr~~ 503 (1186)
.........|..|+..++..
T Consensus 320 ~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 320 EHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 34444555555555555544
No 285
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=64.50 E-value=2.1e+02 Score=34.83 Aligned_cols=43 Identities=12% Similarity=0.164 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001022 547 KEQNAQLRNQVAQLLQLEQE-QKMQIQQRDSTIKTLQAKINSIE 589 (1186)
Q Consensus 547 kE~~~qL~~ql~qLl~~eeE-~k~qiqq~e~eIe~LqqeIeeLe 589 (1186)
+.++..|.+.++.+.++..- ..+...+..+-++..+.+|..||
T Consensus 275 q~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 275 QNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33444455555555443332 23455667778888999999998
No 286
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=64.46 E-value=2.1e+02 Score=35.48 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=11.6
Q ss_pred eeCCCCCCHHHHHHHhHHH
Q 001022 435 NICPNAANMSETLSSLNFS 453 (1186)
Q Consensus 435 ~ISPs~~~~~ETLsTLrFA 453 (1186)
|--|+....-|+++.|+=+
T Consensus 294 c~~~d~eqs~Eslqpleed 312 (527)
T PF15066_consen 294 CKTPDTEQSFESLQPLEED 312 (527)
T ss_pred ccCCCHHhhhhccCCcHHH
Confidence 3446666666777776643
No 287
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=64.26 E-value=3.5 Score=46.59 Aligned_cols=28 Identities=32% Similarity=0.342 Sum_probs=21.6
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
.+..++..-.+.|+-.|.||||||.||.
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 3455555556678889999999999994
No 288
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=64.12 E-value=2e+02 Score=37.98 Aligned_cols=38 Identities=21% Similarity=0.425 Sum_probs=24.9
Q ss_pred hhccCC-hhhhHHHHHHHHhhcccccccccCCCCCCccc
Q 001022 916 LFVHTP-AGELQRQIRSWLAENFEFLSVTGDDASGGTTG 953 (1186)
Q Consensus 916 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1186)
.+||-- -|-|++.|+.||..+=...+..-....-|..|
T Consensus 737 ~IIHGkGtG~Lr~~v~~~L~~~~~V~~f~~a~~~~GG~G 775 (782)
T PRK00409 737 LIIHGKGTGKLRKGVQEFLKKHPSVKSFRDAPPNEGGFG 775 (782)
T ss_pred EEEcCCChhHHHHHHHHHHcCCCceeeeeecCcccCCCe
Confidence 456643 27899999999998766555555444444444
No 289
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=63.99 E-value=4.1e+02 Score=34.06 Aligned_cols=16 Identities=31% Similarity=0.378 Sum_probs=13.7
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
+++-+|..|+|||..|
T Consensus 30 ~~~i~G~Ng~GKttll 45 (650)
T TIGR03185 30 IILIGGLNGAGKTTLL 45 (650)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999999877
No 290
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=63.92 E-value=2.1e+02 Score=30.67 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=7.6
Q ss_pred HHHhHHHHHHhh
Q 001022 447 LSSLNFSSRARS 458 (1186)
Q Consensus 447 LsTLrFAsRAR~ 458 (1186)
+.|+.|..+...
T Consensus 2 FDT~~~v~~Le~ 13 (177)
T PF07798_consen 2 FDTHKFVKRLEA 13 (177)
T ss_pred CcHHHHHHHHHH
Confidence 356777776654
No 291
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=63.72 E-value=3.9 Score=41.91 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=33.2
Q ss_pred eeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHh
Q 001022 192 RVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDL 256 (1186)
Q Consensus 192 ~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~ 256 (1186)
++|+.+--++.|...|...+.+=-....-.+--.|.||+||||+- ..+.+.||..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~----------~liA~~ly~~ 80 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVS----------RLIAEHLYKS 80 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHH----------HHHHHHHHhc
Confidence 466655555555544443333322234444556799999999975 5667788863
No 292
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=63.47 E-value=3e+02 Score=32.33 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 483 LYEREKEIQDLKQEILGLRQALKEANDQC 511 (1186)
Q Consensus 483 l~~le~eI~eLkeEI~~Lr~~L~~~~~q~ 511 (1186)
+..++.++..++.++..++..+.....+.
T Consensus 146 ~~~l~~~i~~~~~~i~~~~~~l~~~~~~l 174 (423)
T TIGR01843 146 LELILAQIKQLEAELAGLQAQLQALRQQL 174 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555444444433
No 293
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.29 E-value=1.4e+02 Score=37.60 Aligned_cols=81 Identities=21% Similarity=0.276 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCchhHHHHHHHHHHHHHHHH
Q 001022 564 EQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDAL 643 (1186)
Q Consensus 564 eeE~k~qiqq~e~eIe~LqqeIeeLe~qLke~l~s~s~~~~~r~e~~~~s~s~~~~~~e~~d~~~~~kKLEEeLkkrd~l 643 (1186)
+.|..++|.+.+.+++.|..++..|+..++++..+. ..++.+ +....+-.-++.-+|+.++=+
T Consensus 326 erE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl---~dlkeh--------------assLas~glk~ds~Lk~leIa 388 (654)
T KOG4809|consen 326 ERERLEEIESFRKENKDLKEKVNALQAELTEKESSL---IDLKEH--------------ASSLASAGLKRDSKLKSLEIA 388 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--------------HHHHHHHhhhhhhhhhHHHHH
Confidence 445566777777777777777777777665433221 111111 112223334677889999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 001022 644 IERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 644 Ie~l~ee~ekl~~rlt~k 661 (1186)
++.+.+++.+|..-|.+.
T Consensus 389 lEqkkEec~kme~qLkkA 406 (654)
T KOG4809|consen 389 LEQKKEECSKMEAQLKKA 406 (654)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999997777665
No 294
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=63.22 E-value=30 Score=46.81 Aligned_cols=27 Identities=26% Similarity=0.527 Sum_probs=21.7
Q ss_pred HHhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 208 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+|..++.|.|+.+. -+||+|||.+-
T Consensus 466 ~eaI~aiL~GrDVLVi--mPTGSGKSLcY 492 (1195)
T PLN03137 466 REIINATMSGYDVFVL--MPTGGGKSLTY 492 (1195)
T ss_pred HHHHHHHHcCCCEEEE--cCCCccHHHHH
Confidence 4678888999996554 59999999874
No 295
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=63.13 E-value=3.1e+02 Score=32.28 Aligned_cols=29 Identities=28% Similarity=0.255 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 484 YEREKEIQDLKQEILGLRQALKEANDQCV 512 (1186)
Q Consensus 484 ~~le~eI~eLkeEI~~Lr~~L~~~~~q~~ 512 (1186)
......-..+..++..|+..++...++..
T Consensus 124 ee~~~~~~k~~~eN~~L~eKlK~l~eQye 152 (309)
T PF09728_consen 124 EEQSERNIKLREENEELREKLKSLIEQYE 152 (309)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444566677777777666555554
No 296
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=62.85 E-value=2.4 Score=54.11 Aligned_cols=24 Identities=46% Similarity=0.551 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 631 KKLEEELKKRDALIERLHEENEKL 654 (1186)
Q Consensus 631 kKLEEeLkkrd~lIe~l~ee~ekl 654 (1186)
.+++.+++.-.+.++.+..+.+.+
T Consensus 387 ~~l~~e~~~L~ek~~~l~~eke~l 410 (713)
T PF05622_consen 387 DKLEFENKQLEEKLEALEEEKERL 410 (713)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 297
>PRK02793 phi X174 lysis protein; Provisional
Probab=62.81 E-value=77 Score=29.55 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 001022 632 KLEEELKKRDALIERLHEENEKLFDRLTEKASS 664 (1186)
Q Consensus 632 KLEEeLkkrd~lIe~l~ee~ekl~~rlt~k~~~ 664 (1186)
.|-+-+.+++..|.++..++..|.+++.+....
T Consensus 26 ~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 58 (72)
T PRK02793 26 ELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 566677778888889999999999999887443
No 298
>PRK11281 hypothetical protein; Provisional
Probab=62.80 E-value=3.9e+02 Score=36.75 Aligned_cols=21 Identities=5% Similarity=0.169 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001022 573 QRDSTIKTLQAKINSIESQRN 593 (1186)
Q Consensus 573 q~e~eIe~LqqeIeeLe~qLk 593 (1186)
.....+.+-++++++++.+++
T Consensus 160 RAQ~~lsea~~RlqeI~~~L~ 180 (1113)
T PRK11281 160 RAQAALYANSQRLQQIRNLLK 180 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334455555566666665553
No 299
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=62.62 E-value=3.5 Score=39.73 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=14.3
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
+|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5889999999999876
No 300
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=62.62 E-value=4.6 Score=43.00 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=15.7
Q ss_pred EEEEeeccCCCCccccccc
Q 001022 220 VSIFAYGQTHSGKTHTMEG 238 (1186)
Q Consensus 220 vcIfAYGQTGSGKTyTM~G 238 (1186)
-.++-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 3488899999999999854
No 301
>PF13479 AAA_24: AAA domain
Probab=62.53 E-value=3.8 Score=44.53 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=17.1
Q ss_pred cEEEEeeccCCCCccccccc
Q 001022 219 NVSIFAYGQTHSGKTHTMEG 238 (1186)
Q Consensus 219 NvcIfAYGQTGSGKTyTM~G 238 (1186)
+..++-||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 56789999999999998754
No 302
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=62.45 E-value=3.4 Score=46.61 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=27.3
Q ss_pred CCChhhHHhchHHhHhhhcC--CccEEEEeeccCCCCcccccc
Q 001022 197 HVGQAELFSDVQPFVQSALD--GYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 197 ~asQeeVFeeV~PLV~svLd--GyNvcIfAYGQTGSGKTyTM~ 237 (1186)
-..|+++.+.+..++..... +....++-||++|+|||+...
T Consensus 6 ~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 6 FIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred HcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 34577777777666655432 222236679999999998873
No 303
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=62.33 E-value=2.7e+02 Score=34.04 Aligned_cols=24 Identities=17% Similarity=0.051 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 632 KLEEELKKRDALIERLHEENEKLF 655 (1186)
Q Consensus 632 KLEEeLkkrd~lIe~l~ee~ekl~ 655 (1186)
+..|..+.-.+.++.++....||.
T Consensus 295 qs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 295 QSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 456666666778888888888776
No 304
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=62.28 E-value=4.4e+02 Score=34.27 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 629 VSKKLEEELKKRDALIERLHEENE 652 (1186)
Q Consensus 629 ~~kKLEEeLkkrd~lIe~l~ee~e 652 (1186)
...-||-+|......|-.+..+++
T Consensus 740 ~k~sLE~ELs~lk~el~slK~QLk 763 (786)
T PF05483_consen 740 HKASLELELSNLKNELSSLKKQLK 763 (786)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444555555555555555555554
No 305
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=62.01 E-value=4.1 Score=47.38 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=19.6
Q ss_pred HHhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 208 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..++..++.+. ..|+-.|.||||||++|
T Consensus 138 ~~~L~~~v~~~-~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 138 REAIIAAVRAH-RNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 34556666554 44566699999999877
No 306
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=61.98 E-value=1.6e+02 Score=38.06 Aligned_cols=41 Identities=27% Similarity=0.432 Sum_probs=24.7
Q ss_pred hhhhhccCCCCCCCCCCCCCCCCCCcccccccccccccccccccccchhhhhhhhcccc
Q 001022 825 ECFLEKSNTGRSRSSSRGSSPARSPVHYVDEKIQGFKINLKPEKKSKLSSVVLRMRGID 883 (1186)
Q Consensus 825 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 883 (1186)
|.|||-.|--.+|=+.+ .|=-++||+|+|.+ ..|+|+=|+.
T Consensus 390 E~~lee~n~D~nR~~~~----------------Rg~h~lLkreekar--~~vsKlP~~~ 430 (660)
T KOG4302|consen 390 ESWLEEYNRDSNRYNAG----------------RGAHLLLKREEKAR--KLVSKLPKMV 430 (660)
T ss_pred HHHHhcccchhhhHhcc----------------ccchhHHHHHHHHH--HHhhhCchhh
Confidence 78898887665554441 22345788887753 3455555544
No 307
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=61.95 E-value=4.7e+02 Score=34.01 Aligned_cols=33 Identities=33% Similarity=0.448 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHhccchhHHHHHHHhhhHHHHhHhcCcccchh
Q 001022 751 NKLLMLVLAAVIKAGASREHEILAEIRDAVFAFIRKMEPTRVMD 794 (1186)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1186)
||++++++++|+=- +=+..+.|++-|=-++|.+
T Consensus 429 ~~~~~l~~~~~~gl-----------~lg~~~a~l~e~~d~~i~s 461 (754)
T TIGR01005 429 KKGPIVGLAAVLGL-----------LLGAIFALLRELFSGRAMR 461 (754)
T ss_pred chHHHHHHHHHHHH-----------HHHHHHHHHHHHHhcccCC
Confidence 67777777665432 2245577777664444433
No 308
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=61.84 E-value=1.4e+02 Score=35.11 Aligned_cols=14 Identities=36% Similarity=0.565 Sum_probs=6.5
Q ss_pred Cccccccccccccc
Q 001022 849 PVHYVDEKIQGFKI 862 (1186)
Q Consensus 849 ~~~~~~~~~~~~~~ 862 (1186)
|..--.+.|.|+.|
T Consensus 267 Py~i~~~~I~~~si 280 (314)
T PF04111_consen 267 PYKIDKDKIGGVSI 280 (314)
T ss_dssp SS-ECTTEECTCES
T ss_pred ceeccCCccCCeee
Confidence 43333566666643
No 309
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=61.72 E-value=1.1e+02 Score=37.95 Aligned_cols=18 Identities=17% Similarity=0.135 Sum_probs=13.8
Q ss_pred hhhhhcHHHHHHHHHHHH
Q 001022 1067 LASLISLDGILNQVKDAV 1084 (1186)
Q Consensus 1067 ~~~~~~~~~~~~~~~~~~ 1084 (1186)
-..-|+-|+++||+.++.
T Consensus 442 ~~~~~~~d~~~~~~~~l~ 459 (475)
T PRK13729 442 HLNGFNTDQMLKQLGNLN 459 (475)
T ss_pred cCCCCCHHHHHHHHhcCC
Confidence 345688899999998864
No 310
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=61.51 E-value=3.2e+02 Score=32.18 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 626 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 626 ~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
......-+||.|..-+-..--+.++++....+...|
T Consensus 212 ~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~k 247 (305)
T PF14915_consen 212 YIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNK 247 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677777777777777777777776666554
No 311
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=61.47 E-value=6e+02 Score=35.10 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 627 SAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 627 ~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
.+..+.+++-++.|.+++..+-+.+..+-..+++.
T Consensus 375 ~~~~~~l~~ll~~rr~LL~~L~~~~~~~l~~l~~L 409 (1109)
T PRK10929 375 AEQNRILDAQLRTQRELLNSLLSGGDTLILELTKL 409 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456678888888888877777766665444433
No 312
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=61.18 E-value=3.5 Score=44.58 Aligned_cols=17 Identities=41% Similarity=0.430 Sum_probs=15.0
Q ss_pred EEEeeccCCCCcccccc
Q 001022 221 SIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM~ 237 (1186)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 57889999999999983
No 313
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=61.04 E-value=28 Score=42.55 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=13.8
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
.|+-||++|+|||++.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677999999999887
No 314
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=60.24 E-value=2e+02 Score=34.55 Aligned_cols=48 Identities=2% Similarity=0.196 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 546 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1186)
Q Consensus 546 ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLk 593 (1186)
+-.+....++++.++..+-.+....+.++..++..+..++++.+.++.
T Consensus 271 l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 271 LIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445444444444445555556666666666666665553
No 315
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=60.18 E-value=4.2e+02 Score=33.38 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=11.9
Q ss_pred EeeccCCCCccccc
Q 001022 223 FAYGQTHSGKTHTM 236 (1186)
Q Consensus 223 fAYGQTGSGKTyTM 236 (1186)
+-+|.||||||-.|
T Consensus 26 vitG~nGaGKS~ll 39 (563)
T TIGR00634 26 VLTGETGAGKSMII 39 (563)
T ss_pred EEECCCCCCHHHHH
Confidence 46799999999776
No 316
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=60.15 E-value=3.7e+02 Score=33.05 Aligned_cols=34 Identities=24% Similarity=0.190 Sum_probs=23.3
Q ss_pred cccCCchhhHHHhhhCC-----CCcccccchhhccchhh
Q 001022 719 IKTTPAGEYLTAALNDF-----NPEQYDNLAVISDGANK 752 (1186)
Q Consensus 719 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 752 (1186)
++-++.|.|+.||=||+ |-|+|.-.+-.+---.|
T Consensus 225 ~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdk 263 (459)
T KOG0288|consen 225 IDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDK 263 (459)
T ss_pred eeecCCCceEEeecCCCceeeeeccchhhhhhhcccccc
Confidence 67788888888888888 55666655555544445
No 317
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=59.87 E-value=3.9 Score=44.00 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=19.0
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
.|..++...+-.++..|..||||||+|.
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 3444554444445558999999999983
No 318
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.80 E-value=3.1e+02 Score=34.41 Aligned_cols=200 Identities=16% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhHHHhHHHHHHHH
Q 001022 476 ANDARKELYEREKEIQDLKQ-----------EILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHK 544 (1186)
Q Consensus 476 ~~~~~~el~~le~eI~eLke-----------EI~~Lr~~L~~~~~q~~~l~~E~qk~~k~~~elq~~L~se~~~L~ek~k 544 (1186)
......+-.-++.++.+|+. ++..+......++++...--.|.+++.+....+.++....+..|. +.+
T Consensus 233 lq~~~~ehkllee~~~rl~~~~s~VegS~S~~~l~~ek~r~~lee~~~~e~~e~rk~v~k~~~l~q~~~~~~~eL~-K~k 311 (613)
T KOG0992|consen 233 LQALIREHKLLEEHLERLHLQLSDVEGSWSGQNLALEKQRSRLEEQVAEETTEKRKAVKKRDDLIQSRKQVSFELE-KAK 311 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCC
Q 001022 545 IEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGM 624 (1186)
Q Consensus 545 ~ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLke~l~s~s~~~~~r~e~~~~s~s~~~~~~e~~ 624 (1186)
-+..++..+...+.++.....--....++.+ .++.+++-++.++.......+....+-.......+.++..++
T Consensus 312 de~~~n~~~~~lie~lq~el~~al~~c~eeN----~~~t~~n~e~~~lq~~etek~ee~tlla~~~dr~se~~e~te--- 384 (613)
T KOG0992|consen 312 DEIKQNDDKVKLIEELQDELSVALKECREEN----KIETQVNFERNKLQNEETEKKEEKTLLAAADDRFSEYSELTE--- 384 (613)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCCccccc-CCCCC
Q 001022 625 D-SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKASSLSSPLSKGSVNVQPRDMA-RNDNN 687 (1186)
Q Consensus 625 d-~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k~~~~ssp~~~~~~~~~~~~~~-r~~~~ 687 (1186)
. ..+++..+.+.-++...-|+.++.|++.....+..-. |..++.+.-.+...+. |+++.
T Consensus 385 qkleelk~~f~a~q~K~a~tikeL~~El~~yrr~i~~~~----s~ia~~~~e~pqq~s~sRSsSs 445 (613)
T KOG0992|consen 385 QKLEELKVQFTAKQEKHAETIKELEIELEEYRRAILRNA----SEIAQYEDELPQQLSLSRSSSS 445 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----cccCCCCccchhhhhhcccccc
No 319
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=59.78 E-value=80 Score=38.98 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001022 571 IQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 571 iqq~e~eIe~LqqeIeeLe~qL 592 (1186)
.+++.++++.++..+.+|..+|
T Consensus 118 ~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 118 IEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555666665555
No 320
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=59.52 E-value=3e+02 Score=30.95 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 626 SSAVSKKLEEELKKRDALIERLHEENEKLFD 656 (1186)
Q Consensus 626 ~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~ 656 (1186)
...+..+++.|...|+..+..+..+++.+..
T Consensus 159 ~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~ 189 (247)
T PF06705_consen 159 ENRLQEKIEKEKNTRESKLSELRSELEEVKR 189 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777888888877777777776654
No 321
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=59.50 E-value=1.1e+02 Score=28.07 Aligned_cols=39 Identities=10% Similarity=0.213 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 551 AQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1186)
Q Consensus 551 ~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe 589 (1186)
............+.++...+..++..+|..|+.++++++
T Consensus 21 ~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 21 TKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333333333334444444444444444443
No 322
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=59.43 E-value=4.2e+02 Score=32.67 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 488 KEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLK--SENYMLADKHKIEKEQNAQLRNQVAQLLQLEQ 565 (1186)
Q Consensus 488 ~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~qk~~k~~~elq~~L~--se~~~L~ek~k~ekE~~~qL~~ql~qLl~~ee 565 (1186)
.+++.|+.++..||+-..............+..........--... ....+...-.+.+.+.-+.+-+++..|+...+
T Consensus 155 ~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE 234 (426)
T smart00806 155 AELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIE 234 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCchhHHHHHHHHHHHHH
Q 001022 566 EQKMQIQQR-----DSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKR 640 (1186)
Q Consensus 566 E~k~qiqq~-----e~eIe~LqqeIeeLe~qLke~l~s~s~~~~~r~e~~~~s~s~~~~~~e~~d~~~~~kKLEEeLkkr 640 (1186)
.++..+.++ ...++....+|...+..|++....-...++. =++--..--..-.+=.+.|.-+
T Consensus 235 ~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~-------------WkKiWE~EL~~VcEEqqfL~lQ 301 (426)
T smart00806 235 ALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPI-------------WKKIWEAELDKVCEEQQFLTLQ 301 (426)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChH-------------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 001022 641 DALIERLHEENEKLFD 656 (1186)
Q Consensus 641 d~lIe~l~ee~ekl~~ 656 (1186)
++++..|.++++|..+
T Consensus 302 edL~~DL~dDL~ka~e 317 (426)
T smart00806 302 EDLIADLKEDLEKAEE 317 (426)
T ss_pred HHHHHHHHHHHHHHHH
No 323
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=59.26 E-value=3.1e+02 Score=31.00 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 546 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1186)
Q Consensus 546 ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLk 593 (1186)
+.+....+...+.+.......++..+..++.+|..++.+.+.+....+
T Consensus 97 le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~ 144 (225)
T COG1842 97 LEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKA 144 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445444444455555566666666666666665554443
No 324
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=59.15 E-value=2.9e+02 Score=30.71 Aligned_cols=77 Identities=22% Similarity=0.243 Sum_probs=39.3
Q ss_pred HHHHHHHhhHhHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001022 517 EVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEAL 596 (1186)
Q Consensus 517 E~qk~~k~~~elq~~L~se~~~L~ek~k~ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLke~l 596 (1186)
++.+..+....++..+..-...+........+.+..+.+++..+.-..++++ ..++.+...++.+|.+|+++|....
T Consensus 76 ~LK~~~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~---~~r~~e~~~YesRI~dLE~~L~~~n 152 (196)
T PF15272_consen 76 ELKKSSKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQ---NERERERIAYESRIADLERQLNSRN 152 (196)
T ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333333344444333333333333344455555555544443333322 2344555689999999999997433
No 325
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=59.01 E-value=2.1e+02 Score=29.00 Aligned_cols=40 Identities=33% Similarity=0.294 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 553 LRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 553 L~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
|..+..++......+..+...+...+..|+.+|.++.+.+
T Consensus 35 L~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 35 LAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444455556667777777777777666
No 326
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=58.56 E-value=5.6 Score=41.75 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=16.7
Q ss_pred HhhhcCCccEEEEeeccCCCCcccccc
Q 001022 211 VQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 211 V~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
|..++..-. ..+..|+.|||||+|+.
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHHH
Confidence 444454333 55668999999999884
No 327
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=58.51 E-value=4.4e+02 Score=32.55 Aligned_cols=27 Identities=30% Similarity=0.355 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 476 ANDARKELYEREKEIQDLKQEILGLRQ 502 (1186)
Q Consensus 476 ~~~~~~el~~le~eI~eLkeEI~~Lr~ 502 (1186)
.+.+..++..++.+++..+.-++.|++
T Consensus 145 ~~~ld~e~~~~~~e~~~Y~~~l~~Le~ 171 (447)
T KOG2751|consen 145 LNKLDKEVEDAEDEVDTYKACLQRLEQ 171 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334444444444444444444443
No 328
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=58.35 E-value=2.9e+02 Score=30.54 Aligned_cols=106 Identities=11% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 001022 486 REKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKI-EKEQNAQLRNQVAQLLQLE 564 (1186)
Q Consensus 486 le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~qk~~k~~~elq~~L~se~~~L~ek~k~-ekE~~~qL~~ql~qLl~~e 564 (1186)
++.-|+++++.+...+..+......-..+..++..........+.....-...-.+.+.. --++......+...+....
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~ 108 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALEREL 108 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 565 QEQKMQIQQRDSTIKTLQAKINSIESQ 591 (1186)
Q Consensus 565 eE~k~qiqq~e~eIe~LqqeIeeLe~q 591 (1186)
..++..+.++...+..|+.++++++..
T Consensus 109 ~~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 109 AAVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 329
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=58.28 E-value=4.1e+02 Score=35.89 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=18.2
Q ss_pred EeeccCCCCcccccc----cCCCCCCcHHHH
Q 001022 223 FAYGQTHSGKTHTME----GSSHDRGLYARC 249 (1186)
Q Consensus 223 fAYGQTGSGKTyTM~----Gs~~~~GIIPRa 249 (1186)
|-.|+.||||+.... |-+..|-++-|+
T Consensus 46 mIiGpNGSGKSSiVcAIcLglgG~Pk~lGRa 76 (1072)
T KOG0979|consen 46 MIIGPNGSGKSSIVCAICLGLGGKPKLLGRA 76 (1072)
T ss_pred eEECCCCCCchHHHHHHHHHcCCChhhccch
Confidence 567999999998764 233445555555
No 330
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=58.24 E-value=1.9e+02 Score=35.57 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 632 KLEEELKKRDALIERLHEENEKLFDRL 658 (1186)
Q Consensus 632 KLEEeLkkrd~lIe~l~ee~ekl~~rl 658 (1186)
+=++.|+-+++++..+.++++++.+=+
T Consensus 289 eEQqfL~~QedL~~DL~eDl~k~~etf 315 (424)
T PF03915_consen 289 EEQQFLKLQEDLLSDLKEDLKKASETF 315 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888899999998884433
No 331
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=57.68 E-value=1.3e+02 Score=33.79 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=9.9
Q ss_pred CeEEEeccCcc-ccccCCchhh
Q 001022 707 GTVALVKSSSE-KIKTTPAGEY 727 (1186)
Q Consensus 707 ~~~~~~~~~~~-~~~~~~~~~~ 727 (1186)
-.|-++.-|-- .+-.||-|..
T Consensus 182 ~~V~~LrlGr~~l~~~t~Dg~~ 203 (251)
T PF11932_consen 182 RQVDFLRLGRVALYYQTLDGSQ 203 (251)
T ss_pred EEEEEEeecchhheeECCCccc
Confidence 33444444432 2555666653
No 332
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=57.41 E-value=5.2 Score=46.07 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=20.9
Q ss_pred HHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 208 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
..++..++.+ ...|+-.|.||||||.+|.
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 3455555554 3457789999999999983
No 333
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=57.21 E-value=4.7 Score=38.77 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=13.4
Q ss_pred EEeeccCCCCccccc
Q 001022 222 IFAYGQTHSGKTHTM 236 (1186)
Q Consensus 222 IfAYGQTGSGKTyTM 236 (1186)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 578999999999986
No 334
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=56.62 E-value=3.2e+02 Score=30.45 Aligned_cols=33 Identities=30% Similarity=0.423 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001022 628 AVSKKLEEELKKRDALIERLHEENEKLFDRLTE 660 (1186)
Q Consensus 628 ~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~ 660 (1186)
+...+|+++++..+..++.+..-.+++++++..
T Consensus 109 s~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~ 141 (205)
T KOG1003|consen 109 SQSEELEEDLRILDSNLKSLSAKEEKLEQKEEK 141 (205)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHH
Confidence 344567777777776666666666666655443
No 335
>PRK11519 tyrosine kinase; Provisional
Probab=56.51 E-value=5.7e+02 Score=33.30 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=14.3
Q ss_pred CccccEEEeeCCCCCCHHHHHHHh
Q 001022 427 SSKTLMIVNICPNAANMSETLSSL 450 (1186)
Q Consensus 427 NSKTlMIv~ISPs~~~~~ETLsTL 450 (1186)
++.++-|-.-++++.-....+++|
T Consensus 226 ~S~ii~Is~~~~dP~~Aa~iaN~l 249 (719)
T PRK11519 226 DTGVLSLTYTGEDREQIRDILNSI 249 (719)
T ss_pred CceEEEEEEEcCCHHHHHHHHHHH
Confidence 355566666666666555566555
No 336
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=55.31 E-value=8.9 Score=45.95 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=16.7
Q ss_pred ccEEEEeeccCCCCccccc
Q 001022 218 YNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 218 yNvcIfAYGQTGSGKTyTM 236 (1186)
....|+.+|+||+|||.|+
T Consensus 173 ~~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3467889999999999998
No 337
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=55.23 E-value=2.5e+02 Score=32.81 Aligned_cols=26 Identities=31% Similarity=0.617 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 478 DARKELYEREKEIQDLKQEILGLRQA 503 (1186)
Q Consensus 478 ~~~~el~~le~eI~eLkeEI~~Lr~~ 503 (1186)
+....+.+.+.||.+|+.++.++++.
T Consensus 79 es~~~l~dRetEI~eLksQL~RMrED 104 (305)
T PF15290_consen 79 ESENRLHDRETEIDELKSQLARMRED 104 (305)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33334444445555555555555444
No 338
>PRK00736 hypothetical protein; Provisional
Probab=54.89 E-value=1.2e+02 Score=28.02 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001022 632 KLEEELKKRDALIERLHEENEKLFDRLTEKAS 663 (1186)
Q Consensus 632 KLEEeLkkrd~lIe~l~ee~ekl~~rlt~k~~ 663 (1186)
.|.+.+.+++..|..+..++..|.+|+.+...
T Consensus 23 ~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 23 ELSDQLAEQWKTVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56677778888899999999999999887643
No 339
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=54.77 E-value=5.5e+02 Score=32.55 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=13.0
Q ss_pred HHHHHHHhhhHHHHhHhcCcccchhh
Q 001022 770 HEILAEIRDAVFAFIRKMEPTRVMDT 795 (1186)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1186)
++|=+.+..|-.-| |.-+=.+.+|+
T Consensus 517 ~~V~~~f~~Ae~lF-~~~~Y~~al~~ 541 (569)
T PRK04778 517 EEVAEALNEAERLF-REYDYKAALEI 541 (569)
T ss_pred HHHHHHHHHHHHHH-HhCChHHHHHH
Confidence 44444555555555 55555444444
No 340
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=54.76 E-value=1.6e+02 Score=29.18 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 626 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 626 ~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
..+....++..++.-+..|+.+.++.+.+..++.+.
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~ 100 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKEL 100 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444454444444555555555555444444443
No 341
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=54.64 E-value=6.2 Score=47.18 Aligned_cols=39 Identities=23% Similarity=0.309 Sum_probs=29.1
Q ss_pred EEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecc
Q 001022 220 VSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNE 279 (1186)
Q Consensus 220 vcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE 279 (1186)
.-|+-||.+||||||+. +.+|+..+ .-.|++.++|-|+=
T Consensus 31 S~~~iyG~sgTGKT~~~--------------r~~l~~~n-------~~~vw~n~~ecft~ 69 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLV--------------RQLLRKLN-------LENVWLNCVECFTY 69 (438)
T ss_pred eeEEEeccCCCchhHHH--------------HHHHhhcC-------CcceeeehHHhccH
Confidence 34689999999999986 46666542 23588999888853
No 342
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=53.40 E-value=7 Score=41.41 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=20.3
Q ss_pred hHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 207 VQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 207 V~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
+.+++..++.. ...+.-.|+||||||.+|.
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 34555555543 2346678999999999873
No 343
>PRK01156 chromosome segregation protein; Provisional
Probab=53.39 E-value=6.8e+02 Score=33.22 Aligned_cols=12 Identities=50% Similarity=0.565 Sum_probs=6.4
Q ss_pred ccccccCchhHH
Q 001022 1112 PSLLDIDHPCAQ 1123 (1186)
Q Consensus 1112 ~~~~~~~~~~~~ 1123 (1186)
|.+|-+|-|.+.
T Consensus 826 ~~~lilDEpt~~ 837 (895)
T PRK01156 826 KSLLIMDEPTAF 837 (895)
T ss_pred CCeEEEeCCCCc
Confidence 555555555543
No 344
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=53.30 E-value=6.9 Score=46.19 Aligned_cols=30 Identities=30% Similarity=0.389 Sum_probs=23.2
Q ss_pred hHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 207 VQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 207 V~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
+..++..++.++ +.|+-.|.||||||.++.
T Consensus 162 ~a~~L~~av~~r-~NILisGGTGSGKTTlLN 191 (355)
T COG4962 162 AAKFLRRAVGIR-CNILISGGTGSGKTTLLN 191 (355)
T ss_pred HHHHHHHHHhhc-eeEEEeCCCCCCHHHHHH
Confidence 345666666666 778899999999998874
No 345
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=53.09 E-value=6.4e+02 Score=32.82 Aligned_cols=22 Identities=5% Similarity=0.004 Sum_probs=9.6
Q ss_pred ccccEEEeeCCCCCCHHHHHHH
Q 001022 428 SKTLMIVNICPNAANMSETLSS 449 (1186)
Q Consensus 428 SKTlMIv~ISPs~~~~~ETLsT 449 (1186)
+..+-|-.-++++.-...-.++
T Consensus 154 s~ii~Is~~~~dP~~Aa~iaN~ 175 (754)
T TIGR01005 154 TRIIAIEFRSEDPKLAAAIPDA 175 (754)
T ss_pred cEEEEEEEecCCHHHHHHHHHH
Confidence 4444444445544444333333
No 346
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=52.89 E-value=3.7e+02 Score=30.09 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=7.2
Q ss_pred cCCCCCCCCchhhhhhH
Q 001022 969 GLGGAVPPSTDALGQLL 985 (1186)
Q Consensus 969 ~~~~~~~~~~~~~~~~~ 985 (1186)
|++++.-...|.||-|+
T Consensus 276 ~~~~~~l~~~~~l~nl~ 292 (302)
T PF10186_consen 276 GIDVPLLDPRDTLGNLL 292 (302)
T ss_pred CCCCCcCCchhhHHHHH
Confidence 44444334444444443
No 347
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=52.73 E-value=3e+02 Score=34.66 Aligned_cols=11 Identities=27% Similarity=0.371 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 001022 495 QEILGLRQALK 505 (1186)
Q Consensus 495 eEI~~Lr~~L~ 505 (1186)
.|...|...+.
T Consensus 441 ~Ec~aL~~rL~ 451 (518)
T PF10212_consen 441 AECRALQKRLE 451 (518)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 348
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=52.61 E-value=8.4 Score=45.38 Aligned_cols=36 Identities=22% Similarity=0.449 Sum_probs=26.6
Q ss_pred CChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 198 VGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 198 asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..|..+|+.|-..+.. .+| ..+|.-|.-|+||||.+
T Consensus 4 ~eQ~~~~~~v~~~~~~-~~~--~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN-EEG--LNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHHc-cCC--cEEEEEcCCCCChhHHH
Confidence 4689999887433333 344 46688999999999987
No 349
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=52.59 E-value=5.5 Score=42.45 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=13.1
Q ss_pred EEEeeccCCCCcccccc
Q 001022 221 SIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM~ 237 (1186)
-++.+|+||||||.++.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 47899999999999983
No 350
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=52.34 E-value=3.2e+02 Score=29.11 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 633 LEEELKKRDALIERLHEENEKLFDRL 658 (1186)
Q Consensus 633 LEEeLkkrd~lIe~l~ee~ekl~~rl 658 (1186)
+..+..+..+.++.+.+....+..++
T Consensus 143 ll~Dy~~~~~~~~~l~~~i~~l~rk~ 168 (177)
T PF13870_consen 143 LLRDYDKTKEEVEELRKEIKELERKV 168 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444443333
No 351
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=52.33 E-value=6.5 Score=45.99 Aligned_cols=29 Identities=34% Similarity=0.455 Sum_probs=20.5
Q ss_pred HHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 208 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
..++..++.+. ..|+-.|.||||||.+|.
T Consensus 134 ~~~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 134 ASVIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 34555555433 347788999999999983
No 352
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=52.06 E-value=4.7e+02 Score=32.28 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001022 485 EREKEIQDLKQEILGLRQALK 505 (1186)
Q Consensus 485 ~le~eI~eLkeEI~~Lr~~L~ 505 (1186)
.+++++..+.+|++..++-+.
T Consensus 147 ~ld~e~~~~~~e~~~Y~~~l~ 167 (447)
T KOG2751|consen 147 KLDKEVEDAEDEVDTYKACLQ 167 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333
No 353
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=51.60 E-value=7 Score=38.60 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=14.0
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
.|+.+|.+|||||+..
T Consensus 1 lii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3789999999999875
No 354
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=51.49 E-value=3e+02 Score=35.87 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=10.5
Q ss_pred hhhhhhhccCCCCCCC
Q 001022 961 AIMDGWMAGLGGAVPP 976 (1186)
Q Consensus 961 ~~~~~~~~~~~~~~~~ 976 (1186)
-|-.-|.--||.|++-
T Consensus 676 wigneWLPslGLpQYr 691 (916)
T KOG0249|consen 676 WIGNEWLPSLGLPQYR 691 (916)
T ss_pred eeccccccccCchHHH
Confidence 3445677888877654
No 355
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=51.40 E-value=1.3e+02 Score=33.87 Aligned_cols=73 Identities=21% Similarity=0.339 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCch
Q 001022 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDS 626 (1186)
Q Consensus 547 kE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLke~l~s~s~~~~~r~e~~~~s~s~~~~~~e~~d~ 626 (1186)
++...+++.++.++...+.++..++.+++.+.+..+.+++.|+.++.
T Consensus 134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s--------------------------------- 180 (290)
T COG4026 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS--------------------------------- 180 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
Confidence 44444555555555555555556666677777778888888876662
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 627 SAVSKKLEEELKKRDALIERLHEENEKLFDR 657 (1186)
Q Consensus 627 ~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~r 657 (1186)
+|+|+++++-....++....+.|++.
T Consensus 181 -----~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 181 -----RLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred -----HHHHHHHhchhHHHHHHHHHHHhccc
Confidence 57777777766666666666655555
No 356
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=51.39 E-value=6.4e+02 Score=32.37 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=13.3
Q ss_pred cchhhccchhhHHHHHH-HHHHH
Q 001022 742 NLAVISDGANKLLMLVL-AAVIK 763 (1186)
Q Consensus 742 ~~~~~~~~~~~~~~~~~-~~~~~ 763 (1186)
.....|.|-+-++.|.+ .|+++
T Consensus 548 ~~~~lS~Ge~~~~~la~~~al~~ 570 (650)
T TIGR03185 548 DKERLSAGERQILAIALLWGLAK 570 (650)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 34566888887775543 34444
No 357
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=51.32 E-value=14 Score=48.06 Aligned_cols=54 Identities=24% Similarity=0.318 Sum_probs=33.6
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEE
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFE 275 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lE 275 (1186)
.+..+.+|+|+.|.| +||||||-+-| +| ++..|+..- .....+.-+.++||=+-
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAAf--------Lp-il~~l~~~~-~~~~~~~i~~lYIsPLk 83 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAAF--------LP-VINELLSLG-KGKLEDGIYALYISPLK 83 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHHH--------HH-HHHHHHhcc-CCCCCCceEEEEeCcHH
Confidence 455667999999988 99999998763 33 566666542 11122334455555443
No 358
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=50.95 E-value=9 Score=38.46 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=13.8
Q ss_pred EEEeeccCCCCcccccc
Q 001022 221 SIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM~ 237 (1186)
.++..|.||||||.++.
T Consensus 26 ~~~i~~~~GsGKT~~~~ 42 (201)
T smart00487 26 DVILAAPTGSGKTLAAL 42 (201)
T ss_pred cEEEECCCCCchhHHHH
Confidence 34667899999999884
No 359
>PRK13342 recombination factor protein RarA; Reviewed
Probab=50.73 E-value=8.2 Score=46.12 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=24.3
Q ss_pred ChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 199 GQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 199 sQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
.|+.+...-.++..-+-.+.-..++-||++|+|||++..
T Consensus 16 Gq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 16 GQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred CcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 355565542233333334555566779999999998773
No 360
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=50.71 E-value=12 Score=47.85 Aligned_cols=90 Identities=20% Similarity=0.285 Sum_probs=52.0
Q ss_pred eecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccccCC---CCCCcH----HHHHHHHHHhhccC
Q 001022 188 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSS---HDRGLY----ARCFEELFDLSNSD 260 (1186)
Q Consensus 188 FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~Gs~---~~~GII----PRaledLF~~i~~~ 260 (1186)
|....=|.|.-.|..-|.. +++.+-+|...- ..+|.||||||+||-.-- ..+-|| .....+|++.+..-
T Consensus 2 f~~~~~~~~~~~Q~~ai~~---l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f 77 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK---LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEF 77 (655)
T ss_pred ceeccCCCCChHHHHHHHH---HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHh
Confidence 4445557888888877664 445555564222 278999999999996511 111111 12234444433221
Q ss_pred cccccccceeEEEEEEeccccc
Q 001022 261 TTATARFNFAVTVFELYNEQLR 282 (1186)
Q Consensus 261 ~~~~~~y~V~VS~lEIYNE~V~ 282 (1186)
- +.....+.||||.-|.-..|
T Consensus 78 ~-p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 78 F-PENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred C-CCCeEEEEeeecccCCcccc
Confidence 1 23346778999988876553
No 361
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=50.69 E-value=75 Score=29.21 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 632 KLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 632 KLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
+|.+.+..++..|.++.+++..|.+|+.+.
T Consensus 22 ~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 22 ELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666777788888888888888877776
No 362
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=50.61 E-value=9.6 Score=49.04 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHhhhhhhhhhhhhhhccccc
Q 001022 982 GQLLSEYAKRVYNSQLQHLKDIAGTLATED 1011 (1186)
Q Consensus 982 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1186)
-+|++||-+-+|+.-.+.++|.=-|+--||
T Consensus 1139 ~~l~ee~~~~~~~~~~~~~~~lw~~~~~~e 1168 (1172)
T KOG0926|consen 1139 NVLLEEYQNWFWKVFRHRVKDLWPPMLKEE 1168 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCccccc
Confidence 379999999999999999998877776554
No 363
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=50.47 E-value=7.1 Score=45.74 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=21.0
Q ss_pred hHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 207 VQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 207 V~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
+..++..++.+. ..|+..|.||||||.+|.
T Consensus 149 ~~~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 149 IKEFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 445566555433 336778999999999983
No 364
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=50.46 E-value=7 Score=44.49 Aligned_cols=17 Identities=41% Similarity=0.436 Sum_probs=14.0
Q ss_pred EEEeeccCCCCcccccc
Q 001022 221 SIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM~ 237 (1186)
.|.-.|+||+|||+|+.
T Consensus 196 vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLA 212 (282)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45556999999999984
No 365
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=50.33 E-value=4.1e+02 Score=29.85 Aligned_cols=7 Identities=29% Similarity=0.140 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 001022 645 ERLHEEN 651 (1186)
Q Consensus 645 e~l~ee~ 651 (1186)
+.++.|.
T Consensus 156 ea~~~E~ 162 (251)
T PF11932_consen 156 EAYQIEM 162 (251)
T ss_pred HHHHHHH
Confidence 3333333
No 366
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=50.31 E-value=8.5 Score=43.64 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=17.1
Q ss_pred CCc-cEEEEeeccCCCCcccccc
Q 001022 216 DGY-NVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 216 dGy-NvcIfAYGQTGSGKTyTM~ 237 (1186)
.|. ...++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 454 4567779999999999874
No 367
>PTZ00424 helicase 45; Provisional
Probab=50.26 E-value=8.4 Score=45.01 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=20.6
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+..+++|.|+. ..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~i--i~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDTI--GQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 4566778899864 5689999999875
No 368
>COG4209 LplB ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]
Probab=50.10 E-value=5.6 Score=45.56 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=22.2
Q ss_pred HHHhhhCCCCcccccchhhccchhhHH
Q 001022 728 LTAALNDFNPEQYDNLAVISDGANKLL 754 (1186)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (1186)
-.||+.--||.+|| ||+-|||||.=
T Consensus 189 ylAai~~Idpt~YE--AA~vDGA~rwq 213 (309)
T COG4209 189 YLAAIAGIDPTLYE--AAMVDGASRWQ 213 (309)
T ss_pred HHHHHHcCCHHHHH--HHHcccHHHHH
Confidence 36899999999999 89999999963
No 369
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=50.04 E-value=5.3e+02 Score=31.01 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=11.2
Q ss_pred HhhhhhHHHHHHHHhhc
Q 001022 387 HVMKSLSALGDVLSSLT 403 (1186)
Q Consensus 387 ~INkSLsALg~VIsALa 403 (1186)
.|=+|=..+..|+..|.
T Consensus 74 ~il~S~~v~~~Vi~~l~ 90 (444)
T TIGR03017 74 DIINSDRVAKKVVDKLK 90 (444)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 44556667777777765
No 370
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=49.77 E-value=3.2e+02 Score=28.62 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=33.3
Q ss_pred HHHHHHhhcccccCcchhhhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 451 NFSSRARSTVLSLGNRDTIKKWRDIAND---ARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNE 517 (1186)
Q Consensus 451 rFAsRAR~I~~~~~n~~~ikk~k~i~~~---~~~el~~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E 517 (1186)
+|.+++..+.++++.......+..+.+. +...+......+..|++|+.+....++...+....+.+.
T Consensus 1 rl~~~l~~~~~Pp~~~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~ 70 (160)
T PF13094_consen 1 RLLRRLARLPFPPQKREDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKN 70 (160)
T ss_pred ChHhhCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777766666653322222222222 122233444556667777766666665544444444433
No 371
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=49.72 E-value=82 Score=28.95 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1186)
Q Consensus 547 kE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLke 594 (1186)
.+.+.+|..+++......++++..+.+...+|..|+..+..|..+++.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777677777777777777777788887777776643
No 372
>PRK06547 hypothetical protein; Provisional
Probab=49.67 E-value=12 Score=39.82 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=20.3
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.++..+..+.--.|.-+|.+|||||+.-
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 3445555566666777799999999875
No 373
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=49.66 E-value=9.3 Score=46.00 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=19.8
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+..+++|.| ++..++||||||.+.
T Consensus 33 ~ai~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 33 QSLPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 34556678998 566779999999764
No 374
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=49.64 E-value=2.8e+02 Score=27.61 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001022 571 IQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 571 iqq~e~eIe~LqqeIeeLe~qL 592 (1186)
|.++..+|..++.++..++..+
T Consensus 83 i~~l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 83 IKKLKAELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333
No 375
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=49.64 E-value=3e+02 Score=28.11 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 569 MQIQQRDSTIKTLQAKINSIESQRN 593 (1186)
Q Consensus 569 ~qiqq~e~eIe~LqqeIeeLe~qLk 593 (1186)
.+-..++.++..++.++++|..+.+
T Consensus 98 ~qk~~le~e~~~~~~r~~dL~~QN~ 122 (132)
T PF07926_consen 98 EQKEQLEKELSELEQRIEDLNEQNK 122 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677777777777776554
No 376
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=49.58 E-value=7.8e+02 Score=33.69 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHhhc-cCCCccc
Q 001022 390 KSLSALGDVLSSLT-SRKDIVP 410 (1186)
Q Consensus 390 kSLsALg~VIsALa-~k~~hVP 410 (1186)
..|++|-.--.|=. .++++++
T Consensus 376 ETlSTLEYA~RAKnIkNKPevN 397 (1041)
T KOG0243|consen 376 ETLSTLEYAHRAKNIKNKPEVN 397 (1041)
T ss_pred HHHHHHHHHHHhhhccCCCccc
Confidence 45666665544433 2444544
No 377
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=49.39 E-value=6.4e+02 Score=31.73 Aligned_cols=28 Identities=32% Similarity=0.377 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 629 VSKKLEEELKKRDALIERLHEENEKLFD 656 (1186)
Q Consensus 629 ~~kKLEEeLkkrd~lIe~l~ee~ekl~~ 656 (1186)
..+.|+.+|..-...|..++.+++....
T Consensus 236 ~~k~Le~kL~~a~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 236 AAKDLESKLAEASAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777788888888888888777654
No 378
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=49.37 E-value=10 Score=39.80 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=18.0
Q ss_pred HhhhcCCccEEEEeeccCCCCccccc
Q 001022 211 VQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 211 V~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
++.++.|+| ++..++||+|||.+.
T Consensus 30 ~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 30 IPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHhcCCc--EEEECCCCCcHHHHH
Confidence 444555887 567789999999874
No 379
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=49.19 E-value=6e+02 Score=31.39 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhHhHHhhhHHHhHHHHHHHHHHHHHH
Q 001022 484 YEREKEIQDLKQEILGLRQALKEA-----NDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQN 550 (1186)
Q Consensus 484 ~~le~eI~eLkeEI~~Lr~~L~~~-----~~q~~~l~~E~qk~~k~~~elq~~L~se~~~L~ek~k~ekE~~ 550 (1186)
..+-..+.+|++-|+.||...... ..++..+..++...-+....++.-+..+.-.|.+-.+.+-+.+
T Consensus 216 d~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V 287 (424)
T PF03915_consen 216 DRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKV 287 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 344455566666666666553221 1233333344444444444444455555444544444333333
No 380
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=49.01 E-value=7.1 Score=46.01 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=20.9
Q ss_pred hHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 207 VQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 207 V~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
+..++..++.+ ...|+-.|.||||||.+|.
T Consensus 151 ~~~~l~~~v~~-~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 151 LEAFLHACVVG-RLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHHHHc-CCeEEEECCCCccHHHHHH
Confidence 44556655542 2336778999999999984
No 381
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=48.76 E-value=13 Score=43.69 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=22.8
Q ss_pred hHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 207 VQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 207 V~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
+..++..++.+. ..|+-.|.||||||.+|.
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 456666666654 678889999999998773
No 382
>PRK04195 replication factor C large subunit; Provisional
Probab=48.48 E-value=11 Score=45.90 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=27.0
Q ss_pred hhhHHhchHHhHhhhcCCc-cEEEEeeccCCCCcccccc
Q 001022 200 QAELFSDVQPFVQSALDGY-NVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 200 QeeVFeeV~PLV~svLdGy-NvcIfAYGQTGSGKTyTM~ 237 (1186)
|..+-+.+..++.+...|. .-.++-||++|+|||++..
T Consensus 19 ~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 19 NEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 4444445566666666665 4567889999999998873
No 383
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=48.24 E-value=5.4e+02 Score=30.56 Aligned_cols=12 Identities=17% Similarity=0.504 Sum_probs=7.4
Q ss_pred cccccccccccc
Q 001022 852 YVDEKIQGFKIN 863 (1186)
Q Consensus 852 ~~~~~~~~~~~~ 863 (1186)
..++.++||=..
T Consensus 282 ~~~D~VsG~LYD 293 (351)
T PF07058_consen 282 ESEDSVSGFLYD 293 (351)
T ss_pred CcCCcchHHHHH
Confidence 456777777543
No 384
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=47.95 E-value=3.9e+02 Score=30.55 Aligned_cols=41 Identities=39% Similarity=0.378 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhccCCCCC
Q 001022 629 VSKKLEEELKKRDALIERLHEENEKLF---DRLTEKASSLSSPL 669 (1186)
Q Consensus 629 ~~kKLEEeLkkrd~lIe~l~ee~ekl~---~rlt~k~~~~ssp~ 669 (1186)
+..+||+|+.+....+..+..|+++|+ -+|=||...++|-.
T Consensus 94 Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 556788888887777655444444442 12333444555543
No 385
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=47.83 E-value=6.2e+02 Score=31.16 Aligned_cols=34 Identities=26% Similarity=0.210 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 628 AVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 628 ~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
....+|+-.|++..+.|+..+...+-+...+..|
T Consensus 285 dar~kL~~ql~k~leEi~~~e~~I~~le~airdK 318 (421)
T KOG2685|consen 285 DARNKLEWQLAKTLEEIADAENNIEALERAIRDK 318 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcc
Confidence 4566788888999999999999999888888877
No 386
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=47.71 E-value=6.7e+02 Score=31.48 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=11.4
Q ss_pred cCccccccccCcchhhhhc
Q 001022 812 RSPELQSIMVSPVECFLEK 830 (1186)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~ 830 (1186)
++|+. -|..-|+|-|+--
T Consensus 306 ~t~Df-VlMFiP~E~af~~ 323 (475)
T PRK10361 306 RTLDY-VLMFIPVEPAFLL 323 (475)
T ss_pred CCCCE-EEEeeccHHHHHH
Confidence 45554 3667788887643
No 387
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=47.55 E-value=5.4e+02 Score=30.34 Aligned_cols=23 Identities=4% Similarity=-0.032 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001022 632 KLEEELKKRDALIERLHEENEKL 654 (1186)
Q Consensus 632 KLEEeLkkrd~lIe~l~ee~ekl 654 (1186)
.|+.+.+--++..+.+...++..
T Consensus 282 ~L~re~~~a~~~y~~~l~r~~~a 304 (362)
T TIGR01010 282 RLVLQNELAQQQLKAALTSLQQT 304 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544
No 388
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=47.46 E-value=13 Score=43.57 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=15.1
Q ss_pred EEEEeeccCCCCcccccc
Q 001022 220 VSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 220 vcIfAYGQTGSGKTyTM~ 237 (1186)
--.+-||+.|+|||.|..
T Consensus 58 p~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 58 PHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred ceEEeeCCCCCcHhHHHH
Confidence 346789999999999973
No 389
>PRK09183 transposase/IS protein; Provisional
Probab=47.41 E-value=11 Score=42.54 Aligned_cols=21 Identities=33% Similarity=0.378 Sum_probs=16.5
Q ss_pred CCccEEEEeeccCCCCccccccc
Q 001022 216 DGYNVSIFAYGQTHSGKTHTMEG 238 (1186)
Q Consensus 216 dGyNvcIfAYGQTGSGKTyTM~G 238 (1186)
.|.| |+-+|++|+||||.+.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHHH
Confidence 4665 45699999999999853
No 390
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=47.34 E-value=8.1 Score=37.00 Aligned_cols=15 Identities=40% Similarity=0.277 Sum_probs=13.2
Q ss_pred EEeeccCCCCccccc
Q 001022 222 IFAYGQTHSGKTHTM 236 (1186)
Q Consensus 222 IfAYGQTGSGKTyTM 236 (1186)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999876
No 391
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=47.31 E-value=3.5e+02 Score=28.11 Aligned_cols=37 Identities=16% Similarity=0.331 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 553 LRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1186)
Q Consensus 553 L~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe 589 (1186)
.++++..+..........+.........|+.+|.+++
T Consensus 87 i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 87 IKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333344445555555666666666554
No 392
>PRK10698 phage shock protein PspA; Provisional
Probab=47.08 E-value=4.6e+02 Score=29.39 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001022 487 EKEIQDLKQEILGLRQALKEA 507 (1186)
Q Consensus 487 e~eI~eLkeEI~~Lr~~L~~~ 507 (1186)
+.-|+++++.+..++..+...
T Consensus 30 ~q~i~em~~~l~~~r~alA~~ 50 (222)
T PRK10698 30 RLMIQEMEDTLVEVRSTSARA 50 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555443
No 393
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=47.04 E-value=5.4e+02 Score=30.27 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001022 633 LEEELKKRDALIERLHEENEKL 654 (1186)
Q Consensus 633 LEEeLkkrd~lIe~l~ee~ekl 654 (1186)
+-++-..++..++.+..++++|
T Consensus 277 m~eer~~~~~~~~~~~~k~~kL 298 (309)
T PF09728_consen 277 MAEERQKLEKELEKLKKKIEKL 298 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444454444444443
No 394
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=47.03 E-value=9.8 Score=40.69 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=15.4
Q ss_pred CccEEEEeeccCCCCccccc
Q 001022 217 GYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 217 GyNvcIfAYGQTGSGKTyTM 236 (1186)
..-..||..||.|||||+.+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHH
Confidence 44567999999999999877
No 395
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=46.94 E-value=12 Score=42.52 Aligned_cols=71 Identities=20% Similarity=0.433 Sum_probs=42.8
Q ss_pred eeecceeeCCCCChhhHHhchHHhHhhhcCCccEE-EEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCccccc
Q 001022 187 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVS-IFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATA 265 (1186)
Q Consensus 187 ~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvc-IfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~ 265 (1186)
...+|...+-+...+.+.+.+..+ +.|..+- ++-||..|+|||.++- .++...... +
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~F----l~G~pannvLL~G~rGtGKSSlVk--------------all~~y~~~---G- 80 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQF----LQGLPANNVLLWGARGTGKSSLVK--------------ALLNEYADQ---G- 80 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHH----HcCCCCcceEEecCCCCCHHHHHH--------------HHHHHHhhc---C-
Confidence 345666666666555555555444 4444332 5559999999998873 222222111 1
Q ss_pred ccceeEEEEEEeccccccc
Q 001022 266 RFNFAVTVFELYNEQLREL 284 (1186)
Q Consensus 266 ~y~V~VS~lEIYNE~V~DL 284 (1186)
+.++||..+.+.||
T Consensus 81 -----LRlIev~k~~L~~l 94 (249)
T PF05673_consen 81 -----LRLIEVSKEDLGDL 94 (249)
T ss_pred -----ceEEEECHHHhccH
Confidence 66789988877766
No 396
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=46.59 E-value=4e+02 Score=29.16 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 551 AQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1186)
Q Consensus 551 ~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe 589 (1186)
.-|+.++.+....++.+...++.+......++.+++.-+
T Consensus 84 ~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke 122 (182)
T PF15035_consen 84 ALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKE 122 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444333
No 397
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=46.39 E-value=10 Score=48.31 Aligned_cols=34 Identities=35% Similarity=0.393 Sum_probs=25.1
Q ss_pred HHhchHHhHhhhc-CCccEEEEeeccCCCCccccc
Q 001022 203 LFSDVQPFVQSAL-DGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 203 VFeeV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 236 (1186)
||.-.......++ .|.|-||+-.|.+|||||.|+
T Consensus 68 if~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 68 IFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp HHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred cchhhhcccccccccccccceeeccccccccccch
Confidence 5554333333332 689999999999999999997
No 398
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=46.08 E-value=2.2e+02 Score=35.39 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 482 ELYEREKEIQDLKQEILGLRQALKEANDQC 511 (1186)
Q Consensus 482 el~~le~eI~eLkeEI~~Lr~~L~~~~~q~ 511 (1186)
.+..++++|++|+.++..++.++.....+.
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666555544443
No 399
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=46.08 E-value=3.8e+02 Score=29.94 Aligned_cols=129 Identities=19% Similarity=0.277 Sum_probs=0.0
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhh---HHHhHHHHHH
Q 001022 466 RDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDL---KSENYMLADK 542 (1186)
Q Consensus 466 ~~~ikk~k~i~~~~~~el~~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~qk~~k~~~elq~~L---~se~~~L~ek 542 (1186)
.+.|.-.+.-..++..++.....+|-.|+..+..++..+...+.....+..............++++ .++...+.++
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrek 88 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREK 88 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhh
Q ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 543 HKIEKEQNAQLRNQVAQL---------LQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1186)
Q Consensus 543 ~k~ekE~~~qL~~ql~qL---------l~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLke 594 (1186)
+......+..++..+... ...-.+.+.+-..-...+..|+.+++.|+.+|..
T Consensus 89 l~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~ 149 (202)
T PF06818_consen 89 LGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQR 149 (202)
T ss_pred hhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHH
No 400
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=46.03 E-value=1.8e+02 Score=36.78 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 001022 640 RDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 640 rd~lIe~l~ee~ekl~~rlt~k 661 (1186)
-+..++.+.+--++-++||.++
T Consensus 249 ~~~~~~~lk~ap~~D~~~L~~~ 270 (555)
T TIGR03545 249 LKADLAELKKAPQNDLKRLENK 270 (555)
T ss_pred HHHHHHHHHhccHhHHHHHHHH
Confidence 3333333444444444455444
No 401
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=45.95 E-value=7.3 Score=37.75 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=19.6
Q ss_pred EEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhh
Q 001022 222 IFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLS 257 (1186)
Q Consensus 222 IfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i 257 (1186)
|+-||++|.|||+.+ ...+.+|.+.+
T Consensus 1 I~i~G~~G~GKS~l~----------~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA----------KELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHH----------HHHHHHHHHHh
Confidence 578999999999988 34556666544
No 402
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=45.89 E-value=18 Score=40.74 Aligned_cols=43 Identities=23% Similarity=0.359 Sum_probs=29.4
Q ss_pred eCCCCChhhHHhchHHhHhhhcC-C-ccEEEEeeccCCCCccccc
Q 001022 194 YGPHVGQAELFSDVQPFVQSALD-G-YNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 194 F~p~asQeeVFeeV~PLV~svLd-G-yNvcIfAYGQTGSGKTyTM 236 (1186)
|++-..|+.+-.....+++.+.. | .-..++-||+.|.|||..-
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHH
Confidence 34445699999888888888764 2 3345888999999998654
No 403
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=45.84 E-value=7 Score=43.26 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=14.7
Q ss_pred ccEEEEeeccCCCCcccccc
Q 001022 218 YNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 218 yNvcIfAYGQTGSGKTyTM~ 237 (1186)
.+..++..|..|||||+||.
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHH
Confidence 45566777889999999983
No 404
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=45.76 E-value=2.3e+02 Score=27.82 Aligned_cols=65 Identities=25% Similarity=0.360 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Q 001022 61 LSTKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLDQVALEAEARIS 126 (1186)
Q Consensus 61 l~~~v~~Lk~~l~~~~~~~~~Lr~e~~d~q~~~~~~l~~v~~~l~~L~~~~~~l~~~~~E~e~r~~ 126 (1186)
-..+...|++.+..++.....|.+....++.+. ..++.+...+..|...+..|++...+.|.+++
T Consensus 33 ~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l-~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 33 TSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYL-QQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566666666666666666666666665543 34456666677777777777777776666543
No 405
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=45.67 E-value=12 Score=41.33 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=14.1
Q ss_pred ccEEEEeeccCCCCccccc
Q 001022 218 YNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 218 yNvcIfAYGQTGSGKTyTM 236 (1186)
.+-.+++.|+.||||||.-
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 5568999999999999876
No 406
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=45.60 E-value=11 Score=43.56 Aligned_cols=39 Identities=23% Similarity=0.363 Sum_probs=25.2
Q ss_pred ChhhHHhchHHhHhhhcC--CccEEEEeeccCCCCcccccc
Q 001022 199 GQAELFSDVQPFVQSALD--GYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 199 sQeeVFeeV~PLV~svLd--GyNvcIfAYGQTGSGKTyTM~ 237 (1186)
.|+++-+.+..++..... +....++-||++|+|||+...
T Consensus 29 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 29 GQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 455555555555554432 222356779999999999884
No 407
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=45.60 E-value=13 Score=47.57 Aligned_cols=30 Identities=30% Similarity=0.204 Sum_probs=20.6
Q ss_pred hHHhHhhhcC-----CccEEEEeeccCCCCcccccc
Q 001022 207 VQPFVQSALD-----GYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 207 V~PLV~svLd-----GyNvcIfAYGQTGSGKTyTM~ 237 (1186)
|..+++.+.. |.+..++.. .||||||+||.
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~ 281 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTML 281 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHH
Confidence 5566666655 344555444 89999999995
No 408
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=45.41 E-value=12 Score=44.74 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=20.5
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+..+++|.| +++.++||||||.+.
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 34556678988 778899999999874
No 409
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=45.40 E-value=9.8 Score=46.65 Aligned_cols=62 Identities=19% Similarity=0.324 Sum_probs=40.3
Q ss_pred HhhhcCCccEEEEeeccCCCCcccccccCC---------C-----CCCcHHH---------HHHHHHHhhccCccccccc
Q 001022 211 VQSALDGYNVSIFAYGQTHSGKTHTMEGSS---------H-----DRGLYAR---------CFEELFDLSNSDTTATARF 267 (1186)
Q Consensus 211 V~svLdGyNvcIfAYGQTGSGKTyTM~Gs~---------~-----~~GIIPR---------aledLF~~i~~~~~~~~~y 267 (1186)
|..+.+|.+. +|++|||||||+...++- . ..|..|+ .+.+||+... ...|
T Consensus 105 ip~i~~Grdl--~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~-----k~~~ 177 (482)
T KOG0335|consen 105 IPIISGGRDL--MACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEAR-----KFSY 177 (482)
T ss_pred cceeecCCce--EEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHH-----hhcc
Confidence 5556778875 899999999999987631 1 1112232 3567776543 3456
Q ss_pred ceeEEEEEEecc
Q 001022 268 NFAVTVFELYNE 279 (1186)
Q Consensus 268 ~V~VS~lEIYNE 279 (1186)
.-.+-.+.+|+.
T Consensus 178 ~s~~~~~~~ygg 189 (482)
T KOG0335|consen 178 LSGMKSVVVYGG 189 (482)
T ss_pred cccceeeeeeCC
Confidence 666777888966
No 410
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=45.34 E-value=4.9e+02 Score=31.13 Aligned_cols=50 Identities=18% Similarity=0.340 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 541 DKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIES 590 (1186)
Q Consensus 541 ek~k~ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~ 590 (1186)
.++..+-++..++..++.++.+....+...++.+...+..|...|+.+..
T Consensus 94 ~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~ 143 (355)
T PF09766_consen 94 ARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKK 143 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33444444555566666666666666666666666666667666666654
No 411
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=45.33 E-value=3.9e+02 Score=28.16 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 485 EREKEIQDLKQEILGLRQALKEAND 509 (1186)
Q Consensus 485 ~le~eI~eLkeEI~~Lr~~L~~~~~ 509 (1186)
.....|.+|+..+..+.+.-..+..
T Consensus 33 ~v~~~i~~L~~~L~~~~n~t~~~~~ 57 (146)
T PF08702_consen 33 DVDKDIQELENLLDQISNSTSEAFE 57 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3445666666666666555444433
No 412
>PLN03025 replication factor C subunit; Provisional
Probab=45.29 E-value=11 Score=43.31 Aligned_cols=42 Identities=24% Similarity=0.422 Sum_probs=25.5
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 189 tFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
+||.|.+ |.++...+..++. .|.-..++-||+.|+|||++..
T Consensus 11 ~l~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 11 KLDDIVG----NEDAVSRLQVIAR---DGNMPNLILSGPPGTGKTTSIL 52 (319)
T ss_pred CHHHhcC----cHHHHHHHHHHHh---cCCCceEEEECCCCCCHHHHHH
Confidence 3555553 4555554444433 2332335569999999999985
No 413
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=45.22 E-value=8.7 Score=38.13 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=13.6
Q ss_pred EEeeccCCCCccccc
Q 001022 222 IFAYGQTHSGKTHTM 236 (1186)
Q Consensus 222 IfAYGQTGSGKTyTM 236 (1186)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999887
No 414
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=45.12 E-value=11 Score=40.01 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.9
Q ss_pred EEEEeeccCCCCccccc
Q 001022 220 VSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 220 vcIfAYGQTGSGKTyTM 236 (1186)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 56889999999999965
No 415
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=45.04 E-value=12 Score=46.55 Aligned_cols=31 Identities=23% Similarity=0.467 Sum_probs=24.5
Q ss_pred chHHhHhhhcCCcc--EEEEeeccCCCCccccc
Q 001022 206 DVQPFVQSALDGYN--VSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 206 eV~PLV~svLdGyN--vcIfAYGQTGSGKTyTM 236 (1186)
+|+..++..+.|.. ..++-+|++|+|||.|+
T Consensus 30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 46777777765553 56788999999999998
No 416
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=44.96 E-value=17 Score=40.57 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=15.6
Q ss_pred cEEEEeeccCCCCcccccc
Q 001022 219 NVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 219 NvcIfAYGQTGSGKTyTM~ 237 (1186)
...++-||++|+|||++..
T Consensus 42 ~~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred cceEEEEcCCCCCHHHHHH
Confidence 3457789999999999873
No 417
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=44.73 E-value=4.7e+02 Score=34.57 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=23.5
Q ss_pred hhccCC-hhhhHHHHHHHHhhcccccccccCC-CCCC
Q 001022 916 LFVHTP-AGELQRQIRSWLAENFEFLSVTGDD-ASGG 950 (1186)
Q Consensus 916 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 950 (1186)
..||-- .|-|++.|+.||..+=...+..-+. .-||
T Consensus 726 ~IIHGkGtG~Lr~~v~~~L~~~~~V~~f~~a~~~~GG 762 (771)
T TIGR01069 726 LIIHGKGSGKLRKGVQELLKNHPKVKSFRDAPPNDGG 762 (771)
T ss_pred EEEcCCChhHHHHHHHHHhcCCcceeeecccCcccCC
Confidence 355632 3889999999999876666664333 3344
No 418
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=44.51 E-value=4.1e+02 Score=28.09 Aligned_cols=14 Identities=7% Similarity=0.214 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 001022 579 KTLQAKINSIESQR 592 (1186)
Q Consensus 579 e~LqqeIeeLe~qL 592 (1186)
+.+...+..|..++
T Consensus 122 e~~~~~ve~L~~ql 135 (140)
T PF10473_consen 122 EESKSAVEMLQKQL 135 (140)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 419
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=44.44 E-value=12 Score=44.55 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=19.7
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+..++.|.|+ ++.++||||||.+.
T Consensus 37 ~aip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 37 LALPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHHhCCCcE--EEECCCCchHHHHH
Confidence 345567889985 45669999999864
No 420
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=44.33 E-value=9.1e+02 Score=32.07 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=7.1
Q ss_pred cHHHHHHHHHHhhc
Q 001022 245 LYARCFEELFDLSN 258 (1186)
Q Consensus 245 IIPRaledLF~~i~ 258 (1186)
|..+.+++|...++
T Consensus 428 iYSkLFD~lV~~iN 441 (1259)
T KOG0163|consen 428 IYSKLFDWLVGRIN 441 (1259)
T ss_pred HHHHHHHHHHHHhh
Confidence 44455555555544
No 421
>PLN02939 transferase, transferring glycosyl groups
Probab=44.32 E-value=4.8e+02 Score=35.42 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 485 EREKEIQDLKQEILGLRQALKEAND 509 (1186)
Q Consensus 485 ~le~eI~eLkeEI~~Lr~~L~~~~~ 509 (1186)
..-.+-..|+.++.-|+..|.+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (977)
T PLN02939 160 KILTEKEALQGKINILEMRLSETDA 184 (977)
T ss_pred HHHHHHHHHHhhHHHHHHHhhhhhh
Confidence 3344556677777777777665443
No 422
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=44.25 E-value=3.3e+02 Score=26.98 Aligned_cols=30 Identities=13% Similarity=0.341 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001022 567 QKMQIQQRDSTIKTLQAKINSIESQRNEAL 596 (1186)
Q Consensus 567 ~k~qiqq~e~eIe~LqqeIeeLe~qLke~l 596 (1186)
+...+..++..+..++.++.+++.++++.+
T Consensus 79 ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 79 LELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566667777777777777777776543
No 423
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=43.99 E-value=6.9e+02 Score=30.57 Aligned_cols=36 Identities=14% Similarity=0.258 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q 001022 632 KLEEELKKRDALIERLHEENEKLFDRLTEKASSLSSPL 669 (1186)
Q Consensus 632 KLEEeLkkrd~lIe~l~ee~ekl~~rlt~k~~~~ssp~ 669 (1186)
...+++..-...++....+++...+++.. +.|.||.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~~--~~I~AP~ 323 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQK--GVIKAPE 323 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CEEECCC
Confidence 44556666666666666666666555433 4566775
No 424
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=43.85 E-value=12 Score=42.04 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=21.8
Q ss_pred hhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 200 QAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 200 QeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
|.++-+.+...+. .|....++-||+.|+|||+++
T Consensus 22 ~~~~~~~l~~~i~---~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 22 QEEIVERLKSYVK---EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred cHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHH
Confidence 3444444444333 344445788999999999887
No 425
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=43.82 E-value=79 Score=39.08 Aligned_cols=46 Identities=15% Similarity=0.124 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 547 kE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
+.+..+++++++.+.+..+.+..+.++.+++|++|+.+++.|+.++
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555543334344566677788888888888888777
No 426
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=43.72 E-value=2.5e+02 Score=31.18 Aligned_cols=90 Identities=19% Similarity=0.237 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhHHHhHHHHHHHHHHHHH
Q 001022 470 KKWRDIANDARKELYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQ 549 (1186)
Q Consensus 470 kk~k~i~~~~~~el~~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~qk~~k~~~elq~~L~se~~~L~ek~k~ekE~ 549 (1186)
..|..-...+...+..+++++..++++++.+-...+..-.....-...++..|.......-++......+...++.++++
T Consensus 132 naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 132 NAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 001022 550 NAQLRNQVAQ 559 (1186)
Q Consensus 550 ~~qL~~ql~q 559 (1186)
..++..+..+
T Consensus 212 ~~~~~~~~~~ 221 (221)
T PF05700_consen 212 AAELKENQQQ 221 (221)
T ss_pred HHHHhccccC
No 427
>PRK09343 prefoldin subunit beta; Provisional
Probab=43.61 E-value=3.7e+02 Score=27.34 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 001022 565 QEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSE 600 (1186)
Q Consensus 565 eE~k~qiqq~e~eIe~LqqeIeeLe~qLke~l~s~s 600 (1186)
+..+..+..++.....++.++.+++.++++.+....
T Consensus 81 E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~ 116 (121)
T PRK09343 81 ELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYY 116 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334466777777788888888888888877665543
No 428
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=43.60 E-value=2.7e+02 Score=25.93 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001022 492 DLKQEILGLRQALKEAND 509 (1186)
Q Consensus 492 eLkeEI~~Lr~~L~~~~~ 509 (1186)
.|..++..|+..+..+..
T Consensus 2 ~Lea~~~~Lr~rLd~~~r 19 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTR 19 (69)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 355566666655555433
No 429
>PRK13764 ATPase; Provisional
Probab=43.45 E-value=10 Score=47.82 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=16.2
Q ss_pred cEEEEeeccCCCCcccccc
Q 001022 219 NVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 219 NvcIfAYGQTGSGKTyTM~ 237 (1186)
...|+..|+||||||+++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3448999999999999984
No 430
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=43.31 E-value=7.8e+02 Score=30.99 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001022 575 DSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 575 e~eIe~LqqeIeeLe~qL 592 (1186)
...+..|+.++..++.++
T Consensus 336 ~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 336 SSEVSSLEAELNKTRSEL 353 (522)
T ss_pred HhHHhhHHHHHHHHHHHH
Confidence 344555555555555555
No 431
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=43.29 E-value=52 Score=42.33 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=25.8
Q ss_pred HHhchHHhHhhhc-CCccEEEEeeccCCCCccccc
Q 001022 203 LFSDVQPFVQSAL-DGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 203 VFeeV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 236 (1186)
||.-......+++ .|.|-||+.-|.+|||||.+.
T Consensus 69 ifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 69 VFAIADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 5554333344444 599999999999999999998
No 432
>PRK10869 recombination and repair protein; Provisional
Probab=42.64 E-value=8.1e+02 Score=31.05 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=13.5
Q ss_pred CCccEEEEeeccCCCCccccc
Q 001022 216 DGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 216 dGyNvcIfAYGQTGSGKTyTM 236 (1186)
.|.|+ -.|.||||||-.|
T Consensus 22 ~glnv---itGetGaGKS~il 39 (553)
T PRK10869 22 SGMTV---ITGETGAGKSIAI 39 (553)
T ss_pred CCcEE---EECCCCCChHHHH
Confidence 36554 5799999998655
No 433
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=42.56 E-value=5.2e+02 Score=32.66 Aligned_cols=23 Identities=4% Similarity=0.228 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001022 567 QKMQIQQRDSTIKTLQAKINSIE 589 (1186)
Q Consensus 567 ~k~qiqq~e~eIe~LqqeIeeLe 589 (1186)
+.+++...++++..-+.+|+.|+
T Consensus 492 MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 492 MSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444445554444
No 434
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=42.52 E-value=2.7e+02 Score=29.81 Aligned_cols=89 Identities=27% Similarity=0.253 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcC
Q 001022 54 SEISKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQ-------EYSNAKIDRVTRYLGVLADKTRKLDQVALEAEARIS 126 (1186)
Q Consensus 54 ~~~~k~~l~~~v~~Lk~~l~~~~~~~~~Lr~e~~d~q-------~~~~~~l~~v~~~l~~L~~~~~~l~~~~~E~e~r~~ 126 (1186)
.|.-|.....+|+..-..+.........++.++.-+. +....+++.+.++|.-|..-+.+-+..+.++-+.+.
T Consensus 43 IErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~n 122 (159)
T PF04949_consen 43 IERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFN 122 (159)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555665554332 234456778888888887777777777777777777
Q ss_pred hhHHHHhhhhhhhccC
Q 001022 127 PLINEKKRLFNDLLTA 142 (1186)
Q Consensus 127 ~~~~eRkkLhN~l~el 142 (1186)
+..+++-.|-+.|.+|
T Consensus 123 EknkeK~~Lv~~L~eL 138 (159)
T PF04949_consen 123 EKNKEKAQLVTRLMEL 138 (159)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777776654
No 435
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=42.48 E-value=6.5e+02 Score=29.89 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 547 KEQNAQLRNQVAQLLQL-EQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 547 kE~~~qL~~ql~qLl~~-eeE~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
..++.+++....++.+. +.++...+..+...|..|+.+...+...+
T Consensus 112 ~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~l 158 (310)
T PF09755_consen 112 SRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEEL 158 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34555565555555532 23333444555555555555444444333
No 436
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=42.29 E-value=15 Score=44.50 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=20.5
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+..+++|.| |++..+||||||.+.
T Consensus 30 ~ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 30 QAIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 44566788998 567789999999875
No 437
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=42.23 E-value=6.3e+02 Score=29.66 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 477 NDARKELYEREKEIQDLKQEILGLRQALKE 506 (1186)
Q Consensus 477 ~~~~~el~~le~eI~eLkeEI~~Lr~~L~~ 506 (1186)
..++..+.+-+..+.+=..||.+||.+|..
T Consensus 71 RHLkakLkes~~~l~dRetEI~eLksQL~R 100 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRETEIDELKSQLAR 100 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334444445555555555566666666543
No 438
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=42.20 E-value=12 Score=44.83 Aligned_cols=19 Identities=32% Similarity=0.244 Sum_probs=15.8
Q ss_pred cEEEEeeccCCCCcccccc
Q 001022 219 NVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 219 NvcIfAYGQTGSGKTyTM~ 237 (1186)
...|.-+|+||+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3466789999999999983
No 439
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=41.96 E-value=71 Score=38.20 Aligned_cols=44 Identities=20% Similarity=0.388 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 549 QNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 549 ~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
.+.++..++..+.....++...++..+..+..+.+++.+|+...
T Consensus 145 Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 145 RIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344444444444444444444445555666666666666433
No 440
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=41.62 E-value=6.1e+02 Score=32.45 Aligned_cols=29 Identities=10% Similarity=0.213 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 563 LEQEQKMQIQQRDSTIKTLQAKINSIESQ 591 (1186)
Q Consensus 563 ~eeE~k~qiqq~e~eIe~LqqeIeeLe~q 591 (1186)
....+.++|.++++++..++++..+-+++
T Consensus 351 ak~Klee~i~elEEElk~~k~ea~~ar~~ 379 (832)
T KOG2077|consen 351 AKLKLEEKIRELEEELKKAKAEAEDARQK 379 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344455556666666666666555544
No 441
>PRK10536 hypothetical protein; Provisional
Probab=41.60 E-value=13 Score=42.58 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=28.9
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..|.|..|-+-+..|......+ .+ +..|+..|.+||||||..
T Consensus 50 ~~~~~~~i~p~n~~Q~~~l~al-------~~--~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 50 DSRDTSPILARNEAQAHYLKAI-------ES--KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred hhcCCccccCCCHHHHHHHHHH-------hc--CCeEEEECCCCCCHHHHH
Confidence 3466666666666666544422 23 247899999999999987
No 442
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=41.14 E-value=9.6e+02 Score=31.44 Aligned_cols=13 Identities=23% Similarity=0.276 Sum_probs=6.9
Q ss_pred hhhhhhHHHHHHH
Q 001022 979 DALGQLLSEYAKR 991 (1186)
Q Consensus 979 ~~~~~~~~~~~~~ 991 (1186)
++++-++..|-++
T Consensus 457 ~~~~~~i~~~k~~ 469 (716)
T KOG4593|consen 457 EELYREITGQKKR 469 (716)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555444
No 443
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=41.06 E-value=23 Score=43.25 Aligned_cols=20 Identities=35% Similarity=0.260 Sum_probs=16.9
Q ss_pred CccEEEEeeccCCCCccccc
Q 001022 217 GYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 217 GyNvcIfAYGQTGSGKTyTM 236 (1186)
+.-..|+-+|.+|+|||+|.
T Consensus 93 ~~p~vI~lvG~~GsGKTTta 112 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTA 112 (437)
T ss_pred CCCeEEEEECCCCCcHHHHH
Confidence 34567888999999999998
No 444
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=40.99 E-value=5.6e+02 Score=28.69 Aligned_cols=12 Identities=8% Similarity=0.313 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 001022 577 TIKTLQAKINSI 588 (1186)
Q Consensus 577 eIe~LqqeIeeL 588 (1186)
.+...+++.+.|
T Consensus 126 ~l~~~eqry~aL 137 (207)
T PF05010_consen 126 RLKKEEQRYQAL 137 (207)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 445
>PF14992 TMCO5: TMCO5 family
Probab=40.85 E-value=2.6e+02 Score=32.67 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=24.5
Q ss_pred HhhhHHHHhHhcCcccchhh--hhhhhhhhHHHHHhhh
Q 001022 776 IRDAVFAFIRKMEPTRVMDT--MLVSRVRILYIRSLLA 811 (1186)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 811 (1186)
.-+-+|-||.-.-|.-+.|+ ++.||-++--.|.+|.
T Consensus 231 LL~y~~f~~~fInpdll~~~LP~~L~R~tlw~LR~~l~ 268 (280)
T PF14992_consen 231 LLGYLLFYIQFINPDLLEDVLPKMLSRRTLWRLREFLF 268 (280)
T ss_pred HHHHHHHHHhhcCcHHHHHHhHHhcchhHHHHHHHHHh
Confidence 34556777777778777775 3567777777777765
No 446
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=40.81 E-value=7.3e+02 Score=29.97 Aligned_cols=115 Identities=16% Similarity=0.205 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cccccccccCCCCCccccccccc
Q 001022 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEAL-------HSSEVRSTIRSEPMPAVSSVLRT 619 (1186)
Q Consensus 547 kE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLke~l-------~s~s~~~~~r~e~~~~s~s~~~~ 619 (1186)
...+..++.++.+..+...++..++.+...+|...+..|..|+..+..+. .+-..+..++.--.--.......
T Consensus 243 ~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L 322 (384)
T PF03148_consen 243 DAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGL 322 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHH
Confidence 34555666777777777777777777777777777777777776554321 12222222211000011111112
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 620 TGDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 620 ~~e~~d~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
..|...+..-...|.+.|..-+..+..+..-..+|.+.+..|
T Consensus 323 ~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K 364 (384)
T PF03148_consen 323 IEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVK 364 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234555666677778888887777777777777777777766
No 447
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=40.79 E-value=4.9 Score=51.43 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=9.3
Q ss_pred CCCCCCHHHHHHHhHHHH
Q 001022 437 CPNAANMSETLSSLNFSS 454 (1186)
Q Consensus 437 SPs~~~~~ETLsTLrFAs 454 (1186)
+|....|-+.+.+|.+..
T Consensus 125 c~~ke~yI~~I~~Ld~~~ 142 (713)
T PF05622_consen 125 CENKEEYIQRIMELDEST 142 (713)
T ss_dssp SSTHHHHHHHHHHS-HHH
T ss_pred CccHHHHHHHHHCCCHHH
Confidence 344455556666665544
No 448
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=40.76 E-value=3.6e+02 Score=34.00 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=12.9
Q ss_pred hhccchhhHHHHHHHHHHH
Q 001022 745 VISDGANKLLMLVLAAVIK 763 (1186)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~ 763 (1186)
..|.|-=+.+||.++.|..
T Consensus 440 ~lSgGe~~rv~la~~l~~~ 458 (563)
T TIGR00634 440 VASGGELSRVMLALKVVLS 458 (563)
T ss_pred hcCHhHHHHHHHHHHHhhC
Confidence 4567777777777766653
No 449
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=40.70 E-value=10 Score=46.40 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=29.6
Q ss_pred ceeecceeeCCCCChhhHHhchHHhH-----hhhcCCccEEEEeeccCCCCccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQPFV-----QSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~PLV-----~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
...+||.|.+.+....++.+-+..+- ...=....-.|+-||++|+|||+..
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
Confidence 35678888876555444443222211 0000112234788999999999987
No 450
>PHA00729 NTP-binding motif containing protein
Probab=40.59 E-value=19 Score=40.29 Aligned_cols=29 Identities=28% Similarity=0.233 Sum_probs=20.9
Q ss_pred HhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
.++..+..|--..|+-+|.+|+||||...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 34555544333579999999999999874
No 451
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=40.35 E-value=6.9e+02 Score=29.56 Aligned_cols=82 Identities=15% Similarity=0.202 Sum_probs=45.6
Q ss_pred ccCCCccccEEEeeCCCCCCHHH----HHHHhHHHHHHhhcccccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 423 SLGESSKTLMIVNICPNAANMSE----TLSSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEIL 498 (1186)
Q Consensus 423 SLGGNSKTlMIv~ISPs~~~~~E----TLsTLrFAsRAR~I~~~~~n~~~ikk~k~i~~~~~~el~~le~eI~eLkeEI~ 498 (1186)
.+||..-.+|++- +--...|.. --..+.||..+-.|.-....- .....+....++...+......|.+|+.++.
T Consensus 21 LvGGp~Gl~ml~A-gA~Y~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~M-s~~ql~~~~~k~~~si~~q~~~i~~l~~~i~ 98 (301)
T PF06120_consen 21 LVGGPPGLVMLGA-GAWYYFYQNAEQARQEAIEFADSLDELKEKLKEM-SSTQLRANIAKAEESIAAQKRAIEDLQKKID 98 (301)
T ss_pred hhcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678777777763 211222332 345788988877664221100 0112234445555666667777777777777
Q ss_pred HHHHHHHH
Q 001022 499 GLRQALKE 506 (1186)
Q Consensus 499 ~Lr~~L~~ 506 (1186)
.|+..+..
T Consensus 99 ~l~~~i~~ 106 (301)
T PF06120_consen 99 SLKDQIKN 106 (301)
T ss_pred HHHHHHHH
Confidence 77766643
No 452
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=40.24 E-value=91 Score=30.27 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 001022 569 MQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLH 648 (1186)
Q Consensus 569 ~qiqq~e~eIe~LqqeIeeLe~qLke~l~s~s~~~~~r~e~~~~s~s~~~~~~e~~d~~~~~kKLEEeLkkrd~lIe~l~ 648 (1186)
.+|...++++...+..++.++..|+...-+ .+-.+.+|+|+..-...+...+
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs----------------------------~e~R~~lE~E~~~l~~~l~~~E 56 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRELS----------------------------PEARRSLEKELNELKEKLENNE 56 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCCC----------------------------hHHHHHHHHHHHHHHHHhhccH
Confidence 367777888888888888888888421111 1233467777777777777777
Q ss_pred HHHHHHHH
Q 001022 649 EENEKLFD 656 (1186)
Q Consensus 649 ee~ekl~~ 656 (1186)
+++..|.+
T Consensus 57 ~eL~~Lrk 64 (85)
T PF15188_consen 57 KELKLLRK 64 (85)
T ss_pred HHHHHHHH
Confidence 77777644
No 453
>PRK00295 hypothetical protein; Provisional
Probab=39.75 E-value=2.7e+02 Score=25.72 Aligned_cols=31 Identities=29% Similarity=0.399 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001022 632 KLEEELKKRDALIERLHEENEKLFDRLTEKA 662 (1186)
Q Consensus 632 KLEEeLkkrd~lIe~l~ee~ekl~~rlt~k~ 662 (1186)
.|.+.+.+++..|..+..++..|.+|+.+..
T Consensus 23 ~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 23 ALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666777788888999999999999988875
No 454
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=39.74 E-value=16 Score=44.18 Aligned_cols=43 Identities=28% Similarity=0.459 Sum_probs=30.9
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccc
Q 001022 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHT 235 (1186)
Q Consensus 189 tFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyT 235 (1186)
+||.|++ |+.+...-.|+=.-+-.|.-...+-||+.|+|||..
T Consensus 22 ~lde~vG----Q~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 22 SLDEVVG----QEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred CHHHhcC----hHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 3555554 777776655554445568888899999999999964
No 455
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=39.73 E-value=2.4e+02 Score=29.04 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 001022 579 KTLQAKINSIESQRNE 594 (1186)
Q Consensus 579 e~LqqeIeeLe~qLke 594 (1186)
+.++..+.+.+..+.+
T Consensus 30 ~~le~qL~E~~~al~E 45 (119)
T COG1382 30 QQLEAQLKEIEKALEE 45 (119)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 456
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=39.45 E-value=15 Score=45.84 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=20.3
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.+|..+++|.|+ ++..+||||||.+.
T Consensus 20 ~~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 20 EIISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 456677899986 44569999999885
No 457
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=39.43 E-value=7.6e+02 Score=29.80 Aligned_cols=39 Identities=23% Similarity=0.289 Sum_probs=27.2
Q ss_pred HHhHHHHHHHHHHhcChhHHHHhhhhhhhccCCCCEEEE
Q 001022 111 TRKLDQVALEAEARISPLINEKKRLFNDLLTAKGNIKVF 149 (1186)
Q Consensus 111 ~~~l~~~~~E~e~r~~~~~~eRkkLhN~l~elkGnIRVf 149 (1186)
..+|+..+.++..++..+...|.++-+.+..+.+++.|.
T Consensus 59 k~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~ 97 (384)
T PF03148_consen 59 KNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIA 97 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 344555666666677777888888888888877666543
No 458
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=39.29 E-value=42 Score=43.13 Aligned_cols=47 Identities=28% Similarity=0.458 Sum_probs=34.1
Q ss_pred HHhchHHhHhhhc--CCccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhcc
Q 001022 203 LFSDVQPFVQSAL--DGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNS 259 (1186)
Q Consensus 203 VFeeV~PLV~svL--dGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~ 259 (1186)
-|.+|...+.+++ +|--+|+.--|..|||||+|+. ..++.|-....+
T Consensus 404 E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~----------~Vm~~Lq~~s~~ 452 (767)
T KOG1514|consen 404 EFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVL----------EVMKELQTSSAQ 452 (767)
T ss_pred HHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHH----------HHHHHHHHHHhh
Confidence 3555666666666 3777799999999999999984 356666654443
No 459
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=39.18 E-value=5e+02 Score=27.62 Aligned_cols=30 Identities=27% Similarity=0.257 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001022 630 SKKLEEELKKRDALIERLHEENEKLFDRLT 659 (1186)
Q Consensus 630 ~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt 659 (1186)
=.+..+++......|+.+....+.+..++.
T Consensus 147 y~~~~~~~~~l~~~i~~l~rk~~~l~~~i~ 176 (177)
T PF13870_consen 147 YDKTKEEVEELRKEIKELERKVEILEMRIK 176 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 347788888888888888888887766653
No 460
>PRK00295 hypothetical protein; Provisional
Probab=39.17 E-value=1.8e+02 Score=26.82 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 548 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1186)
Q Consensus 548 E~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLke 594 (1186)
+++.+|..+++......++++..+.+....|..|+.++..|..+++.
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666777777777777788888877776654
No 461
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=38.97 E-value=9e+02 Score=30.51 Aligned_cols=17 Identities=29% Similarity=0.165 Sum_probs=9.9
Q ss_pred hhcchhhhhhhhccCCh
Q 001022 906 FATGNKALAALFVHTPA 922 (1186)
Q Consensus 906 ~~~~~~~~~~~~~~~~~ 922 (1186)
+-+|-.++--|=||.--
T Consensus 294 ~~~g~~~~~~~~~~~~~ 310 (514)
T TIGR03319 294 REEGEQAAFDLGVHGLH 310 (514)
T ss_pred HHHHHHHHHHhCCCcCC
Confidence 34566666666666543
No 462
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=38.95 E-value=70 Score=41.53 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=20.2
Q ss_pred CCccEEEEeeccCCCCccccc
Q 001022 216 DGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 216 dGyNvcIfAYGQTGSGKTyTM 236 (1186)
.|.|-||+.-|.+|||||.|.
T Consensus 88 ~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 88 LKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cCCCCeEEEecCCCCChhHHH
Confidence 699999999999999999998
No 463
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=38.94 E-value=16 Score=47.13 Aligned_cols=45 Identities=18% Similarity=0.272 Sum_probs=26.6
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 189 tFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
+||.+++ |+.+-.....+...+-.|.-..++-||++|+|||++..
T Consensus 26 tldd~vG----Qe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 26 TLEEFVG----QDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred cHHHhcC----cHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 3555543 44444332223222334555577889999999999874
No 464
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=38.83 E-value=14 Score=42.52 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=13.4
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
.|+-||++|+|||++-
T Consensus 153 nVLFyGppGTGKTm~A 168 (368)
T COG1223 153 NVLFYGPPGTGKTMMA 168 (368)
T ss_pred eeEEECCCCccHHHHH
Confidence 4678999999998764
No 465
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=38.79 E-value=2.5e+02 Score=34.96 Aligned_cols=86 Identities=19% Similarity=0.192 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 001022 58 KQALSTKVQRLKDEIKFVKEDYLELRQEATDLQEYSN--------------AKIDRVTRYLGVLADKTRKLDQVALEAEA 123 (1186)
Q Consensus 58 k~~l~~~v~~Lk~~l~~~~~~~~~Lr~e~~d~q~~~~--------------~~l~~v~~~l~~L~~~~~~l~~~~~E~e~ 123 (1186)
-+.|..++..|++++..+......+..+..-++.... .-+..+...+..+.++..++.....+.+.
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAER 152 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666555554444443322222110 01122333344444444444444444444
Q ss_pred hcChhHHHHhhhhhhhccCC
Q 001022 124 RISPLINEKKRLFNDLLTAK 143 (1186)
Q Consensus 124 r~~~~~~eRkkLhN~l~elk 143 (1186)
++.....+..+|.+++..+.
T Consensus 153 ~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 153 RIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 44444444444545444443
No 466
>PRK04406 hypothetical protein; Provisional
Probab=38.75 E-value=2.2e+02 Score=26.89 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 546 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1186)
Q Consensus 546 ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLke 594 (1186)
+.+++.+|..+++......++++..+.+....|..|+.++..|..+++.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666666666666666666677777777777777666643
No 467
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=38.37 E-value=99 Score=40.02 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 001022 640 RDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 640 rd~lIe~l~ee~ekl~~rlt~k 661 (1186)
+...++.+.+||+.|..++...
T Consensus 564 k~~~l~~L~~En~~L~~~l~~l 585 (722)
T PF05557_consen 564 KKSTLEALQAENEDLLARLRSL 585 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4577889999999998888666
No 468
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=38.24 E-value=5.1e+02 Score=27.40 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001022 486 REKEIQDLKQEILGLRQALKE 506 (1186)
Q Consensus 486 le~eI~eLkeEI~~Lr~~L~~ 506 (1186)
...+-..|+..+..|...|..
T Consensus 15 ~~~e~dsle~~v~~LEreLe~ 35 (140)
T PF10473_consen 15 SESEKDSLEDHVESLERELEM 35 (140)
T ss_pred HHHhHhhHHHHHHHHHHHHHH
Confidence 334444455555555555543
No 469
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.15 E-value=22 Score=41.88 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=25.2
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhcCC-ccEEEEeeccCCCCccccc
Q 001022 189 EFDRVYGPHVGQAELFSDVQPFVQSALDG-YNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 189 tFD~VF~p~asQeeVFeeV~PLV~svLdG-yNvcIfAYGQTGSGKTyTM 236 (1186)
+||.|.+ |+.+-+.+...+ -.| ..-.++-||+.|+|||++.
T Consensus 14 ~~~~iiG----q~~~~~~l~~~~---~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 14 YFRDIIG----QKHIVTAISNGL---SLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred chhhccC----hHHHHHHHHHHH---HcCCCCeEEEEecCCCCCHHHHH
Confidence 3555553 555444333222 233 3456789999999999887
No 470
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=38.12 E-value=9.5e+02 Score=30.51 Aligned_cols=152 Identities=15% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhHhHHhhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 001022 485 EREKEIQDLKQEILGLRQAL--------KEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQ 556 (1186)
Q Consensus 485 ~le~eI~eLkeEI~~Lr~~L--------~~~~~q~~~l~~E~qk~~k~~~elq~~L~se~~~L~ek~k~ekE~~~qL~~q 556 (1186)
....+|..+++++......| ......+....+.+-..+.....-..........+.+.+...++.+.++...
T Consensus 249 ~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e 328 (560)
T PF06160_consen 249 DIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEE 328 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCchhHHHHHH
Q 001022 557 VAQLL---QLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKL 633 (1186)
Q Consensus 557 l~qLl---~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLke~l~s~s~~~~~r~e~~~~s~s~~~~~~e~~d~~~~~kKL 633 (1186)
+..+. ......-....+++.++..++..+..+...+ ......-..+...-+++
T Consensus 329 ~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i------------------------~~~~~~yS~i~~~l~~~ 384 (560)
T PF06160_consen 329 LERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERI------------------------EEQQVPYSEIQEELEEI 384 (560)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HcCCcCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001022 634 EEELKKRDALIERLHEENEKLFDRLTE 660 (1186)
Q Consensus 634 EEeLkkrd~lIe~l~ee~ekl~~rlt~ 660 (1186)
.+.|.+-++......+.+..|.+...+
T Consensus 385 ~~~l~~ie~~q~~~~~~l~~L~~dE~~ 411 (560)
T PF06160_consen 385 EEQLEEIEEEQEEINESLQSLRKDEKE 411 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 471
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.97 E-value=9e+02 Score=30.22 Aligned_cols=44 Identities=25% Similarity=0.233 Sum_probs=31.9
Q ss_pred chhHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHhhhhccCCCC
Q 001022 625 DSSAVSKKLEEELKKRD---------------ALIERLHEENEKLFDRLTEKASSLSSP 668 (1186)
Q Consensus 625 d~~~~~kKLEEeLkkrd---------------~lIe~l~ee~ekl~~rlt~k~~~~ssp 668 (1186)
+.+.+..+|-|||=.-= .+-.+.|.|..||+++|.+.+..+--.
T Consensus 172 ~fE~lN~~L~eELP~L~~sRv~f~vp~Fqsl~~~q~vf~~Emskl~~~L~~v~~kl~dq 230 (460)
T KOG3771|consen 172 VFEELNNELLEELPALYSSRVGFFVPTFQSLFNLQLVFHKEMSKLYKNLYDVLDKLFDQ 230 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45666777777764322 223788999999999999998888766
No 472
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=37.97 E-value=17 Score=44.06 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=20.5
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+..+++|.|+.+ ..+||||||.+.
T Consensus 116 ~ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 45667789999765 559999999775
No 473
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=37.91 E-value=3.1e+02 Score=36.01 Aligned_cols=175 Identities=17% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhHhHHhhhHHHhHHHHHHHHHHHHHHHHHHH--------HHHH
Q 001022 492 DLKQEILGLRQALKEAN----DQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRN--------QVAQ 559 (1186)
Q Consensus 492 eLkeEI~~Lr~~L~~~~----~q~~~l~~E~qk~~k~~~elq~~L~se~~~L~ek~k~ekE~~~qL~~--------ql~q 559 (1186)
.|+.|++.||+++..+. .......+|.-+.++..+..+-.-.-.-.-|+++...+++....... -...
T Consensus 433 ~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK 512 (762)
T PLN03229 433 ELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEK 512 (762)
T ss_pred cHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHH
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHH------------HHHHHHHHhhcccccccccCCCCCcccccccccCC
Q 001022 560 LLQLEQEQKMQIQQ------RDSTIKTLQAKIN------------SIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTG 621 (1186)
Q Consensus 560 Ll~~eeE~k~qiqq------~e~eIe~LqqeIe------------eLe~qLke~l~s~s~~~~~r~e~~~~s~s~~~~~~ 621 (1186)
...+++|.+..+.+ +..+.+.|+.... .|..+++++...--.+...+.+....-........
T Consensus 513 ~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~~~~~kek~ea~~aev~~~g~ 592 (762)
T PLN03229 513 IEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSGA 592 (762)
T ss_pred HHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHhhh-hccCCCC
Q 001022 622 DGMDSSAVSKKLEEELKKRDALIE-------------------------------RLHEENEKLFDRLTEK-ASSLSSP 668 (1186)
Q Consensus 622 e~~d~~~~~kKLEEeLkkrd~lIe-------------------------------~l~ee~ekl~~rlt~k-~~~~ssp 668 (1186)
+..+ ..-..|-+++.+-.+.|+ ...+..++|.+.++++ ..-+.||
T Consensus 593 s~~~--~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k~KIe~L~~eIkkkIe~av~ss 669 (762)
T PLN03229 593 SSGD--ELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLNEEINKKIERVIRSS 669 (762)
T ss_pred cccC--CCCHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhcccccCCChhhHHHHHHHHHHHHHHHHHHhcch
No 474
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.86 E-value=9.1e+02 Score=30.20 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001022 570 QIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 570 qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
++.+.=...-.+.+++.+|+.++
T Consensus 463 ei~E~i~~tg~~~revrdlE~qI 485 (521)
T KOG1937|consen 463 EILEMIRETGALKREVRDLESQI 485 (521)
T ss_pred HHHHHHHHcchHHHHHHHHHHHH
Confidence 33333334445555666666555
No 475
>CHL00176 ftsH cell division protein; Validated
Probab=37.73 E-value=18 Score=46.16 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=28.4
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcC---------CccEEEEeeccCCCCccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALD---------GYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~PLV~svLd---------GyNvcIfAYGQTGSGKTyTM 236 (1186)
..++||.|.+.+...+++ ..++.-+-+ ...-.|+-||++|+|||+..
T Consensus 178 ~~~~f~dv~G~~~~k~~l----~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEF----EEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CCCCHHhccChHHHHHHH----HHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 356788887754433333 333322211 11234888999999999987
No 476
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=37.51 E-value=15 Score=49.66 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=0.0
Q ss_pred HhchHHhHhhhcCCccEEEEeeccCCCCccccccc
Q 001022 204 FSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG 238 (1186)
Q Consensus 204 FeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 238 (1186)
++.|..+++.+-+|...+++. .+||||||+||.+
T Consensus 419 ~~AI~ai~~a~~~g~r~~Ll~-maTGSGKT~tai~ 452 (1123)
T PRK11448 419 EDAIQAVEKAIVEGQREILLA-MATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHHHHHHhccCCeEEE-eCCCCCHHHHHHH
No 477
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=37.47 E-value=22 Score=43.16 Aligned_cols=18 Identities=39% Similarity=0.438 Sum_probs=16.0
Q ss_pred EEEEeeccCCCCcccccc
Q 001022 220 VSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 220 vcIfAYGQTGSGKTyTM~ 237 (1186)
..|+-.|++|+|||+|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 578899999999999983
No 478
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=37.45 E-value=7.9e+02 Score=29.42 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 487 EKEIQDLKQEILGLRQALKEANDQCV 512 (1186)
Q Consensus 487 e~eI~eLkeEI~~Lr~~L~~~~~q~~ 512 (1186)
......|++++..|...+....++..
T Consensus 129 ~~~n~klre~NieL~eKlkeL~eQy~ 154 (391)
T KOG1850|consen 129 RSKNDKLREDNIELSEKLKELGEQYE 154 (391)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555556555555544443
No 479
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.20 E-value=18 Score=43.97 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=19.8
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..|..++.|.|+ +...+||||||.+.
T Consensus 18 ~ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 18 EVINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 456677889985 45579999999764
No 480
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=37.10 E-value=85 Score=40.60 Aligned_cols=34 Identities=32% Similarity=0.410 Sum_probs=24.9
Q ss_pred HHhchHHhHhhhc-CCccEEEEeeccCCCCccccc
Q 001022 203 LFSDVQPFVQSAL-DGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 203 VFeeV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 236 (1186)
||.-......+.+ .|.|-||+.-|.+|||||.|.
T Consensus 74 iyaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 74 IFAIADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 5553333333333 599999999999999999997
No 481
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=36.94 E-value=2.2e+02 Score=35.46 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001022 567 QKMQIQQRDSTIKTLQAKINSI 588 (1186)
Q Consensus 567 ~k~qiqq~e~eIe~LqqeIeeL 588 (1186)
++.++++....+..|+.+++.+
T Consensus 121 l~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 121 LKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555566666666666543
No 482
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=36.71 E-value=14 Score=43.47 Aligned_cols=15 Identities=27% Similarity=0.514 Sum_probs=13.6
Q ss_pred EEeeccCCCCccccc
Q 001022 222 IFAYGQTHSGKTHTM 236 (1186)
Q Consensus 222 IfAYGQTGSGKTyTM 236 (1186)
++.+|.||||||+++
T Consensus 2 ~lv~g~tGsGKt~~~ 16 (384)
T cd01126 2 VLVFAPTRSGKGVGF 16 (384)
T ss_pred eeEecCCCCCCccEE
Confidence 578999999999998
No 483
>PRK02119 hypothetical protein; Provisional
Probab=36.43 E-value=2.4e+02 Score=26.45 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 546 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1186)
Q Consensus 546 ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLke 594 (1186)
..+++..|..+++......++++..+.+....|..|+.++..|..+++.
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666676666666667777777777777788887777766654
No 484
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.25 E-value=1.1e+03 Score=30.53 Aligned_cols=36 Identities=25% Similarity=0.131 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 626 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 626 ~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
-+.+.+.||++++--.++--++|.|+|-+.....++
T Consensus 499 d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~ 534 (852)
T KOG4787|consen 499 DELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEI 534 (852)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHH
Confidence 456788899888888888888888888764443333
No 485
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=36.19 E-value=15 Score=36.20 Aligned_cols=16 Identities=44% Similarity=0.586 Sum_probs=13.5
Q ss_pred EEeeccCCCCcccccc
Q 001022 222 IFAYGQTHSGKTHTME 237 (1186)
Q Consensus 222 IfAYGQTGSGKTyTM~ 237 (1186)
++-||.+|+|||+.+.
T Consensus 2 ~~i~G~~G~GKT~l~~ 17 (165)
T cd01120 2 ILVFGPTGSGKTTLAL 17 (165)
T ss_pred eeEeCCCCCCHHHHHH
Confidence 4679999999999873
No 486
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=36.15 E-value=17 Score=42.69 Aligned_cols=16 Identities=38% Similarity=0.576 Sum_probs=13.5
Q ss_pred EEeeccCCCCcccccc
Q 001022 222 IFAYGQTHSGKTHTME 237 (1186)
Q Consensus 222 IfAYGQTGSGKTyTM~ 237 (1186)
...||+|||||++.+-
T Consensus 90 ~~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLR 105 (369)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4569999999999874
No 487
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=36.14 E-value=6.1e+02 Score=27.73 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=31.6
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 531 DLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQE-QKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 531 ~L~se~~~L~ek~k~ekE~~~qL~~ql~qLl~~eeE-~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
++..+...+......+..+..++..+...+.+...+ .....+...+++..|+...+.|+.++
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444455555555555554443333 22333445666667777766666665
No 488
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=36.10 E-value=21 Score=43.74 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=21.3
Q ss_pred cCCCccccEEEeeCCCCCCHHHHHHHhHHHHHHh
Q 001022 424 LGESSKTLMIVNICPNAANMSETLSSLNFSSRAR 457 (1186)
Q Consensus 424 LGGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRAR 457 (1186)
+.-..+..+|+|++..... +..|.+|-+=|
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~AlrRR 349 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYALRRR 349 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHHHHhh
Confidence 4556789999999987654 44677776544
No 489
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=36.09 E-value=1.9e+02 Score=34.21 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=36.9
Q ss_pred HHHHHhhHhHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 519 QKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1186)
Q Consensus 519 qk~~k~~~elq~~L~se~~~L~ek~k~ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLk 593 (1186)
+.+++...-....|..+..-+.=++..+|..+.++..+++.-.....+...++......+..|+...++|+..|+
T Consensus 125 eekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~ 199 (405)
T KOG2010|consen 125 EEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLR 199 (405)
T ss_pred HHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444443333333344444444555555444444444455555566666666666666665554
No 490
>PRK14974 cell division protein FtsY; Provisional
Probab=36.09 E-value=28 Score=41.07 Aligned_cols=20 Identities=40% Similarity=0.491 Sum_probs=17.4
Q ss_pred CccEEEEeeccCCCCccccc
Q 001022 217 GYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 217 GyNvcIfAYGQTGSGKTyTM 236 (1186)
+...+|.-.|.+|+|||.|+
T Consensus 138 ~~~~vi~~~G~~GvGKTTti 157 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTI 157 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHH
Confidence 44578999999999999998
No 491
>PF05729 NACHT: NACHT domain
Probab=35.99 E-value=17 Score=36.13 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=14.2
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
.++-+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 4678999999999988
No 492
>PRK06696 uridine kinase; Validated
Probab=35.90 E-value=29 Score=37.81 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=23.0
Q ss_pred HHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 203 LFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 203 VFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
+.+++...|...-.+....|.-.|.+|||||+..
T Consensus 6 ~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 6 LIKELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 3444433333334567778888999999999865
No 493
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=35.71 E-value=6.2e+02 Score=27.68 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001022 632 KLEEELKKRDALIERLHEENEKLFDRLTE 660 (1186)
Q Consensus 632 KLEEeLkkrd~lIe~l~ee~ekl~~rlt~ 660 (1186)
....+.++..+.|+-+...++.|.+.++.
T Consensus 160 ~~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 160 LRQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555677778888888888888777653
No 494
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=35.59 E-value=2.7e+02 Score=31.84 Aligned_cols=44 Identities=20% Similarity=0.236 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 544 KIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINS 587 (1186)
Q Consensus 544 k~ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIee 587 (1186)
-+...|-+..+.+..+|++....+..++..+..+++.|+.-.-+
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~k 125 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVK 125 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666544444444444444444444444333
No 495
>PRK04325 hypothetical protein; Provisional
Probab=35.50 E-value=3.5e+02 Score=25.42 Aligned_cols=66 Identities=12% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 572 QQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTTGDGMDSSAVSKKLEEELKKRDALIERLHEEN 651 (1186)
Q Consensus 572 qq~e~eIe~LqqeIeeLe~qLke~l~s~s~~~~~r~e~~~~s~s~~~~~~e~~d~~~~~kKLEEeLkkrd~lIe~l~ee~ 651 (1186)
...+..|..|+.++.-.+.-+. .|-+.+.+++..|.++..++
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe--------------------------------------~LN~vv~~Qq~~I~~L~~ql 46 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLID--------------------------------------GLNATVARQQQTLDLLQAQL 46 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhhccCC---CCCCCCCCC
Q 001022 652 EKLFDRLTEKASSLS---SPLSKGSVN 675 (1186)
Q Consensus 652 ekl~~rlt~k~~~~s---sp~~~~~~~ 675 (1186)
..|.+|+.+...... +|..-.||+
T Consensus 47 ~~L~~rl~~~~~~~~~~~~~~~e~PPH 73 (74)
T PRK04325 47 RLLYQQMRDANPDAAEPYSLRDEIPPH 73 (74)
T ss_pred HHHHHHHHHhcccccCCCCCCcCCCCC
No 496
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=35.50 E-value=29 Score=40.51 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=15.6
Q ss_pred cEEEEeeccCCCCcccccc
Q 001022 219 NVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 219 NvcIfAYGQTGSGKTyTM~ 237 (1186)
...|.-.|++|+|||.|+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIG 132 (318)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4567777999999999983
No 497
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=35.42 E-value=20 Score=41.38 Aligned_cols=30 Identities=30% Similarity=0.445 Sum_probs=21.9
Q ss_pred hHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 207 VQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 207 V~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
+.+++..++.+. ..|+-.|.||||||..|.
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 566777777544 355667999999999773
No 498
>PRK02793 phi X174 lysis protein; Provisional
Probab=34.82 E-value=2.4e+02 Score=26.35 Aligned_cols=48 Identities=10% Similarity=0.174 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE 594 (1186)
Q Consensus 547 kE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLke 594 (1186)
.+++.+|..+++......++++..+.+....|..|+.++..|..+++.
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666676666666677777777777777888888877777754
No 499
>PRK00131 aroK shikimate kinase; Reviewed
Probab=34.80 E-value=18 Score=36.65 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=0.0
Q ss_pred EEEeeccCCCCcccc
Q 001022 221 SIFAYGQTHSGKTHT 235 (1186)
Q Consensus 221 cIfAYGQTGSGKTyT 235 (1186)
+|+-+|.+|||||+.
T Consensus 6 ~i~l~G~~GsGKstl 20 (175)
T PRK00131 6 NIVLIGFMGAGKSTI 20 (175)
T ss_pred eEEEEcCCCCCHHHH
No 500
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=34.78 E-value=17 Score=40.44 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=0.0
Q ss_pred cEEEEeeccCCCCccccc
Q 001022 219 NVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 219 NvcIfAYGQTGSGKTyTM 236 (1186)
...++-||..|+|||++.
T Consensus 12 ~~~~liyG~~G~GKtt~a 29 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTI 29 (220)
T ss_pred CcEEEEECCCCCCHHHHH
Done!