Query 001022
Match_columns 1186
No_of_seqs 497 out of 2367
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 06:57:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001022.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001022hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4etp_A Kinesin-like protein KA 100.0 2.9E-85 9.8E-90 752.4 30.7 343 117-463 32-401 (403)
2 3u06_A Protein claret segregat 100.0 5E-85 1.7E-89 751.6 30.2 336 124-464 39-387 (412)
3 2rep_A Kinesin-like protein KI 100.0 3.3E-82 1.1E-86 720.9 24.7 328 132-459 10-376 (376)
4 3cob_A Kinesin heavy chain-lik 100.0 1.3E-81 4.5E-86 714.4 27.6 342 140-504 1-354 (369)
5 2h58_A Kinesin-like protein KI 100.0 1.8E-80 6.2E-85 696.4 27.5 314 141-460 1-329 (330)
6 3t0q_A AGR253WP; kinesin, alph 100.0 1.1E-80 3.9E-85 702.7 25.0 319 140-462 1-347 (349)
7 3lre_A Kinesin-like protein KI 100.0 4.5E-80 1.5E-84 699.2 25.0 322 135-459 1-355 (355)
8 1f9v_A Kinesin-like protein KA 100.0 9.6E-80 3.3E-84 694.7 23.7 318 142-463 1-345 (347)
9 1bg2_A Kinesin; motor protein, 100.0 2E-79 6.8E-84 686.8 22.6 308 141-459 4-325 (325)
10 2vvg_A Kinesin-2; motor protei 100.0 2.6E-79 9E-84 691.5 23.4 319 143-464 3-340 (350)
11 2y65_A Kinesin, kinesin heavy 100.0 3.8E-79 1.3E-83 693.6 23.8 313 141-464 8-338 (365)
12 3bfn_A Kinesin-like protein KI 100.0 3.7E-79 1.3E-83 697.4 21.3 324 137-463 14-351 (388)
13 3b6u_A Kinesin-like protein KI 100.0 1.2E-78 4E-83 690.6 25.2 326 137-464 14-358 (372)
14 1v8k_A Kinesin-like protein KI 100.0 5.3E-79 1.8E-83 699.9 20.7 327 129-463 57-406 (410)
15 3nwn_A Kinesin-like protein KI 100.0 1.5E-78 5E-83 687.5 23.3 316 141-459 21-359 (359)
16 2zfi_A Kinesin-like protein KI 100.0 1.9E-78 6.6E-83 688.3 24.3 319 143-463 3-358 (366)
17 1goj_A Kinesin, kinesin heavy 100.0 3.3E-78 1.1E-82 683.9 25.1 317 141-464 3-335 (355)
18 2wbe_C Bipolar kinesin KRP-130 100.0 1.3E-78 4.6E-83 691.0 22.1 320 140-464 19-366 (373)
19 2heh_A KIF2C protein; kinesin, 100.0 8.6E-79 2.9E-83 694.2 20.3 325 129-461 37-384 (387)
20 1x88_A Kinesin-like protein KI 100.0 7.8E-79 2.7E-83 690.0 18.8 320 141-463 5-354 (359)
21 1t5c_A CENP-E protein, centrom 100.0 3E-77 1E-81 674.6 26.6 311 143-464 3-333 (349)
22 2nr8_A Kinesin-like protein KI 100.0 1.3E-77 4.6E-82 679.4 23.4 319 137-459 16-358 (358)
23 2owm_A Nckin3-434, related to 100.0 3.8E-77 1.3E-81 691.6 25.3 325 138-464 32-418 (443)
24 3gbj_A KIF13B protein; kinesin 100.0 2.8E-77 9.6E-82 676.2 22.4 314 144-458 1-349 (354)
25 4a14_A Kinesin, kinesin-like p 100.0 1.2E-76 4.1E-81 668.9 23.2 306 142-457 9-344 (344)
26 3dc4_A Kinesin-like protein NO 100.0 3.9E-76 1.3E-80 664.3 24.6 304 141-464 19-340 (344)
27 1ry6_A Internal kinesin; kines 100.0 1.7E-76 5.8E-81 670.8 21.7 313 145-463 1-335 (360)
28 4h1g_A Maltose binding protein 100.0 3.7E-73 1.3E-77 692.2 24.4 325 133-460 363-712 (715)
29 2o0a_A S.cerevisiae chromosome 100.0 4.7E-32 1.6E-36 295.2 10.1 273 126-461 6-291 (298)
30 2kin_B Kinesin; motor protein, 99.9 1.6E-25 5.4E-30 212.3 2.3 79 386-464 2-81 (100)
31 3kin_B Kinesin heavy chain; mo 99.9 1.4E-24 4.7E-29 211.3 8.1 76 389-464 1-77 (117)
32 4etp_B Spindle POLE BODY-assoc 98.2 1.5E-05 5.3E-10 88.5 14.6 140 124-288 39-183 (333)
33 3oja_B Anopheles plasmodium-re 96.3 0.071 2.4E-06 63.4 17.6 26 433-458 391-416 (597)
34 3na7_A HP0958; flagellar bioge 96.0 0.87 3E-05 49.4 22.9 91 541-661 97-187 (256)
35 2v71_A Nuclear distribution pr 95.4 3.1 0.00011 43.8 22.9 36 626-661 142-180 (189)
36 3ghg_A Fibrinogen alpha chain; 95.2 0.29 1E-05 57.8 16.0 94 483-576 59-152 (562)
37 3oja_B Anopheles plasmodium-re 94.9 0.17 5.8E-06 60.2 13.2 46 547-592 536-581 (597)
38 3ec2_A DNA replication protein 94.7 0.008 2.7E-07 60.2 1.1 52 186-237 5-56 (180)
39 3na7_A HP0958; flagellar bioge 94.7 6 0.00021 42.8 24.4 33 629-661 137-169 (256)
40 1i84_S Smooth muscle myosin he 94.6 0.13 4.3E-06 67.0 12.2 40 244-283 432-472 (1184)
41 1i84_S Smooth muscle myosin he 94.1 0.14 4.7E-06 66.6 10.8 22 488-509 857-878 (1184)
42 2dfs_A Myosin-5A; myosin-V, in 93.8 1.1 3.8E-05 57.9 18.2 40 244-283 406-445 (1080)
43 3vkg_A Dynein heavy chain, cyt 93.3 3.4 0.00012 58.9 22.6 47 1100-1146 2981-3035(3245)
44 2w58_A DNAI, primosome compone 93.3 0.03 1E-06 56.9 2.1 51 186-236 20-71 (202)
45 2v71_A Nuclear distribution pr 92.9 11 0.00037 39.7 23.7 35 469-503 12-46 (189)
46 1c1g_A Tropomyosin; contractIl 91.8 13 0.00043 38.1 25.1 24 635-658 174-197 (284)
47 3o0z_A RHO-associated protein 91.7 14 0.00047 38.3 19.2 18 572-589 93-110 (168)
48 2dfs_A Myosin-5A; myosin-V, in 91.6 4.9 0.00017 52.1 19.6 17 576-592 1023-1039(1080)
49 1deq_A Fibrinogen (alpha chain 91.5 7.1 0.00024 44.8 18.4 96 484-579 63-158 (390)
50 2qgz_A Helicase loader, putati 91.1 0.077 2.6E-06 58.8 2.2 51 187-237 120-170 (308)
51 3vkg_A Dynein heavy chain, cyt 90.5 11 0.00038 53.9 22.6 34 485-518 1931-1964(3245)
52 2fxo_A Myosin heavy chain, car 90.1 15 0.00052 36.0 19.2 42 551-592 79-120 (129)
53 4b4t_M 26S protease regulatory 89.9 0.66 2.3E-05 54.3 8.7 51 186-236 176-232 (434)
54 4b4t_K 26S protease regulatory 89.7 1.3 4.5E-05 51.7 11.0 50 187-236 168-223 (428)
55 1m1j_A Fibrinogen alpha subuni 89.1 16 0.00054 42.9 18.8 107 485-605 62-169 (491)
56 4b4t_J 26S protease regulatory 87.7 1.3 4.6E-05 51.4 9.1 50 187-236 144-199 (405)
57 2fxo_A Myosin heavy chain, car 85.8 28 0.00096 34.1 18.6 44 546-589 81-124 (129)
58 3bos_A Putative DNA replicatio 84.3 0.38 1.3E-05 49.0 2.1 46 188-237 25-70 (242)
59 2bjv_A PSP operon transcriptio 83.4 0.28 9.5E-06 52.0 0.7 45 187-236 2-46 (265)
60 4gkp_A Spindle POLE BODY-assoc 82.7 1.5 5E-05 48.6 6.0 128 135-289 4-135 (275)
61 3uk6_A RUVB-like 2; hexameric 82.1 0.53 1.8E-05 52.0 2.3 46 187-236 40-87 (368)
62 1l8q_A Chromosomal replication 81.1 0.57 1.9E-05 51.2 2.1 50 186-237 6-55 (324)
63 3oja_A Leucine-rich immune mol 80.4 16 0.00055 42.4 14.1 26 567-592 440-465 (487)
64 3ghg_A Fibrinogen alpha chain; 79.5 16 0.00055 43.5 13.4 53 551-603 113-166 (562)
65 1jbk_A CLPB protein; beta barr 79.0 0.73 2.5E-05 44.6 1.9 29 208-236 32-60 (195)
66 2kjq_A DNAA-related protein; s 78.9 0.67 2.3E-05 45.9 1.6 43 186-237 12-54 (149)
67 1m1j_B Fibrinogen beta chain; 78.5 60 0.002 38.4 17.9 24 570-593 169-192 (464)
68 2v1u_A Cell division control p 78.1 0.74 2.5E-05 50.4 1.8 44 193-236 17-61 (387)
69 3oja_A Leucine-rich immune mol 78.1 93 0.0032 36.0 19.5 12 359-370 237-248 (487)
70 3h4m_A Proteasome-activating n 77.9 0.73 2.5E-05 49.0 1.7 51 186-236 12-68 (285)
71 1ixz_A ATP-dependent metallopr 77.6 0.83 2.8E-05 48.1 2.0 51 186-236 11-66 (254)
72 1d2n_A N-ethylmaleimide-sensit 77.5 0.92 3.1E-05 48.3 2.3 21 216-236 61-81 (272)
73 2r62_A Cell division protease 77.5 0.74 2.5E-05 48.6 1.5 51 186-236 6-61 (268)
74 3te6_A Regulatory protein SIR3 76.3 0.66 2.3E-05 52.1 0.8 30 207-236 32-62 (318)
75 2p65_A Hypothetical protein PF 76.0 0.83 2.8E-05 44.4 1.3 29 208-236 32-60 (187)
76 2z4s_A Chromosomal replication 75.4 1.1 3.9E-05 51.9 2.5 50 185-237 99-148 (440)
77 1lv7_A FTSH; alpha/beta domain 75.1 1.4 4.8E-05 46.4 2.9 51 186-236 7-62 (257)
78 3t15_A Ribulose bisphosphate c 74.7 1.2 4.2E-05 48.5 2.4 29 208-236 21-53 (293)
79 1g8p_A Magnesium-chelatase 38 73.0 0.94 3.2E-05 49.4 0.9 44 186-236 19-62 (350)
80 1f5n_A Interferon-induced guan 72.7 45 0.0015 40.6 15.3 20 572-591 563-582 (592)
81 1iy2_A ATP-dependent metallopr 72.0 1.7 5.9E-05 46.5 2.7 51 186-236 35-90 (278)
82 3cf0_A Transitional endoplasmi 71.0 1.3 4.5E-05 48.3 1.5 50 187-236 11-66 (301)
83 1qde_A EIF4A, translation init 70.5 1.6 5.5E-05 44.6 2.0 26 209-236 43-68 (224)
84 3syl_A Protein CBBX; photosynt 70.3 1.8 6.3E-05 46.4 2.4 20 217-236 65-84 (309)
85 1fnn_A CDC6P, cell division co 70.2 1.6 5.5E-05 48.0 2.0 38 199-236 21-61 (389)
86 3ghg_B Fibrinogen beta chain; 70.0 82 0.0028 37.2 16.0 32 485-516 92-123 (461)
87 2qby_A CDC6 homolog 1, cell di 69.8 1.6 5.6E-05 47.6 1.9 37 200-236 25-62 (386)
88 2qz4_A Paraplegin; AAA+, SPG7, 69.7 2.2 7.4E-05 44.5 2.8 19 218-236 38-56 (262)
89 1vec_A ATP-dependent RNA helic 69.7 1.8 6.3E-05 43.4 2.1 25 210-236 33-57 (206)
90 2qby_B CDC6 homolog 3, cell di 69.2 1.9 6.4E-05 47.5 2.3 38 199-236 24-62 (384)
91 2gxq_A Heat resistant RNA depe 69.0 1.8 6.2E-05 43.4 1.9 25 210-236 31-55 (207)
92 2c9o_A RUVB-like 1; hexameric 68.3 1.9 6.6E-05 49.9 2.2 46 187-236 33-80 (456)
93 2chg_A Replication factor C sm 68.1 1.8 6E-05 42.9 1.6 34 200-236 22-55 (226)
94 3b9p_A CG5977-PA, isoform A; A 68.0 1.7 5.8E-05 46.6 1.6 51 186-236 16-71 (297)
95 1sxj_C Activator 1 40 kDa subu 67.4 1.9 6.5E-05 47.6 1.8 42 189-237 23-64 (340)
96 4gkw_A Spindle assembly abnorm 66.7 1.1E+02 0.0037 30.6 22.5 29 564-592 100-128 (167)
97 2i1j_A Moesin; FERM, coiled-co 65.8 17 0.00059 43.9 9.8 107 485-591 339-448 (575)
98 3dkp_A Probable ATP-dependent 65.6 2.3 7.9E-05 44.2 1.9 26 209-236 58-83 (245)
99 3bor_A Human initiation factor 65.5 1.6 5.3E-05 45.6 0.6 26 209-236 59-84 (237)
100 3tnu_A Keratin, type I cytoske 65.4 75 0.0026 31.1 12.6 10 574-583 117-126 (131)
101 3ghg_C Fibrinogen gamma chain; 64.9 49 0.0017 38.6 12.8 25 485-509 35-59 (411)
102 3d8b_A Fidgetin-like protein 1 64.8 1.9 6.6E-05 48.2 1.3 50 187-236 80-134 (357)
103 4b4t_L 26S protease subunit RP 64.6 11 0.00038 44.1 7.5 50 187-236 177-232 (437)
104 2zqm_A Prefoldin beta subunit 64.4 78 0.0027 29.6 12.2 36 626-661 75-110 (117)
105 1deq_A Fibrinogen (alpha chain 64.2 92 0.0031 36.0 14.5 43 550-592 115-157 (390)
106 2v66_B Nuclear distribution pr 63.6 1.1E+02 0.0038 29.6 16.8 23 485-507 7-29 (111)
107 1p9r_A General secretion pathw 63.5 2.7 9.4E-05 48.7 2.2 29 209-237 157-185 (418)
108 1m1j_B Fibrinogen beta chain; 63.5 1.7E+02 0.006 34.6 17.2 20 570-589 176-195 (464)
109 2pl3_A Probable ATP-dependent 63.2 2.7 9.3E-05 43.4 1.9 25 210-236 55-79 (236)
110 2ocy_A RAB guanine nucleotide 63.2 1.4E+02 0.0047 30.6 16.1 33 560-592 113-145 (154)
111 3co5_A Putative two-component 62.4 2.7 9.4E-05 40.6 1.7 33 204-237 13-45 (143)
112 3mq9_A Bone marrow stromal ant 62.3 1.4E+02 0.0048 34.3 16.2 24 570-593 444-467 (471)
113 3iuy_A Probable ATP-dependent 61.9 3 0.0001 42.9 1.9 26 209-236 49-74 (228)
114 1fxk_A Prefoldin; archaeal pro 61.8 69 0.0024 29.6 11.1 37 625-661 62-98 (107)
115 1w5s_A Origin recognition comp 61.7 4.1 0.00014 45.2 3.2 33 204-236 31-69 (412)
116 1t6n_A Probable ATP-dependent 61.4 2.9 0.0001 42.6 1.8 26 209-236 43-68 (220)
117 3b6e_A Interferon-induced heli 61.2 1.7 5.9E-05 43.6 0.0 23 212-236 43-65 (216)
118 3mq9_A Bone marrow stromal ant 60.8 1.2E+02 0.0041 34.9 15.3 33 557-589 438-470 (471)
119 3u1c_A Tropomyosin alpha-1 cha 60.8 1.1E+02 0.0038 28.8 16.4 47 543-589 53-99 (101)
120 1x79_B RAB GTPase binding effe 60.7 74 0.0025 31.0 11.1 81 64-144 7-98 (112)
121 3pfi_A Holliday junction ATP-d 60.7 2.9 9.9E-05 45.6 1.7 44 189-236 27-72 (338)
122 3hnw_A Uncharacterized protein 60.5 49 0.0017 33.0 10.3 26 568-593 109-134 (138)
123 3tnu_B Keratin, type II cytosk 60.5 1.3E+02 0.0044 29.3 13.9 19 483-501 38-56 (129)
124 4h22_A Leucine-rich repeat fli 60.0 54 0.0018 31.4 9.8 64 530-593 19-82 (103)
125 3jvv_A Twitching mobility prot 60.0 2.8 9.5E-05 47.6 1.4 27 211-237 115-141 (356)
126 1wrb_A DJVLGB; RNA helicase, D 59.8 3.4 0.00012 43.2 2.0 26 209-236 52-77 (253)
127 1xwi_A SKD1 protein; VPS4B, AA 59.2 2.8 9.6E-05 46.4 1.3 49 188-236 9-62 (322)
128 3ly5_A ATP-dependent RNA helic 58.6 2.3 8E-05 45.3 0.5 26 209-236 83-108 (262)
129 1iqp_A RFCS; clamp loader, ext 58.4 4.7 0.00016 43.1 2.8 40 190-236 24-63 (327)
130 1njg_A DNA polymerase III subu 58.1 4.2 0.00014 40.5 2.2 17 220-236 46-62 (250)
131 3eiq_A Eukaryotic initiation f 57.2 4.1 0.00014 45.0 2.1 26 209-236 69-94 (414)
132 2oxc_A Probable ATP-dependent 56.9 4.1 0.00014 42.1 2.0 25 210-236 54-78 (230)
133 3pvs_A Replication-associated 56.9 3.6 0.00012 48.0 1.7 38 199-236 30-67 (447)
134 2eqb_B RAB guanine nucleotide 56.4 1.4E+02 0.0047 28.4 13.8 26 479-504 10-35 (97)
135 2ke4_A CDC42-interacting prote 56.3 76 0.0026 30.0 10.3 74 48-123 9-90 (98)
136 3vfd_A Spastin; ATPase, microt 56.1 3.7 0.00012 46.4 1.5 51 186-236 110-165 (389)
137 3ber_A Probable ATP-dependent 56.1 4.2 0.00015 42.9 1.9 26 209-236 72-97 (249)
138 1hqc_A RUVB; extended AAA-ATPa 56.1 4.2 0.00014 43.8 1.9 45 188-236 9-55 (324)
139 3llm_A ATP-dependent RNA helic 55.7 4 0.00014 42.6 1.6 26 209-236 68-93 (235)
140 3fe2_A Probable ATP-dependent 55.4 3.8 0.00013 42.7 1.5 24 211-236 60-83 (242)
141 3eie_A Vacuolar protein sortin 55.2 3.8 0.00013 45.0 1.5 50 187-236 14-68 (322)
142 3fmo_B ATP-dependent RNA helic 55.0 4 0.00014 44.7 1.5 28 209-236 121-148 (300)
143 2chq_A Replication factor C sm 54.6 3.2 0.00011 44.2 0.7 41 189-236 15-55 (319)
144 4fcw_A Chaperone protein CLPB; 54.5 4.9 0.00017 43.0 2.2 38 199-236 21-64 (311)
145 2eyu_A Twitching motility prot 54.3 4.5 0.00015 43.7 1.8 20 218-237 24-43 (261)
146 3u61_B DNA polymerase accessor 53.8 5.6 0.00019 43.2 2.5 41 189-236 24-65 (324)
147 1in4_A RUVB, holliday junction 53.4 4.8 0.00016 44.6 1.9 44 189-236 23-68 (334)
148 2v4h_A NF-kappa-B essential mo 53.3 1.4E+02 0.0047 29.0 11.5 10 580-589 94-103 (110)
149 1gvn_B Zeta; postsegregational 53.0 8.3 0.00028 42.1 3.7 36 201-236 10-50 (287)
150 2jee_A YIIU; FTSZ, septum, coi 52.6 1.4E+02 0.0049 27.5 11.1 14 546-559 32-45 (81)
151 3i00_A HIP-I, huntingtin-inter 52.5 98 0.0033 30.3 10.7 22 486-507 13-34 (120)
152 3efg_A Protein SLYX homolog; x 52.4 36 0.0012 30.9 7.1 31 632-662 32-62 (78)
153 1q0u_A Bstdead; DEAD protein, 51.9 3.1 0.00011 42.5 0.1 25 210-236 34-58 (219)
154 2j0s_A ATP-dependent RNA helic 51.8 5.1 0.00018 44.5 1.8 26 209-236 66-91 (410)
155 1sxj_D Activator 1 41 kDa subu 51.5 3.6 0.00012 44.7 0.5 27 210-236 49-75 (353)
156 1sxj_E Activator 1 40 kDa subu 51.4 4.7 0.00016 44.1 1.4 42 189-236 12-53 (354)
157 2qp9_X Vacuolar protein sortin 51.1 4.7 0.00016 45.2 1.4 50 187-236 47-101 (355)
158 3n70_A Transport activator; si 51.1 5.7 0.0002 38.4 1.8 19 218-236 23-41 (145)
159 3fmp_B ATP-dependent RNA helic 51.0 5.5 0.00019 45.7 1.9 26 210-235 122-147 (479)
160 1u0j_A DNA replication protein 50.5 6.2 0.00021 43.4 2.2 29 208-236 90-121 (267)
161 4gkw_A Spindle assembly abnorm 50.5 2E+02 0.007 28.6 14.9 40 625-664 120-162 (167)
162 3ol1_A Vimentin; structural ge 50.2 1.6E+02 0.0055 28.5 11.8 10 581-590 106-115 (119)
163 3iv1_A Tumor susceptibility ge 49.8 1.6E+02 0.0053 27.1 10.7 45 546-590 30-74 (78)
164 1f5n_A Interferon-induced guan 49.6 1.1E+02 0.0037 37.2 12.9 22 215-236 34-55 (592)
165 2oap_1 GSPE-2, type II secreti 49.5 19 0.00065 42.8 6.3 20 216-237 259-278 (511)
166 1jr3_A DNA polymerase III subu 49.2 7.8 0.00027 42.4 2.7 36 199-236 20-55 (373)
167 2fz4_A DNA repair protein RAD2 49.1 6.4 0.00022 41.5 1.9 25 211-237 102-126 (237)
168 3u59_A Tropomyosin beta chain; 49.0 1.7E+02 0.0059 27.3 15.8 43 547-589 57-99 (101)
169 2ewv_A Twitching motility prot 48.9 5.8 0.0002 45.1 1.6 28 210-237 127-154 (372)
170 2z0m_A 337AA long hypothetical 48.8 6.2 0.00021 42.1 1.8 24 211-236 25-48 (337)
171 3hnw_A Uncharacterized protein 48.3 1E+02 0.0036 30.7 10.4 14 547-560 116-129 (138)
172 2jlq_A Serine protease subunit 48.1 5.6 0.00019 45.9 1.4 26 210-236 11-36 (451)
173 3fht_A ATP-dependent RNA helic 48.0 5.6 0.00019 43.8 1.4 28 209-236 54-81 (412)
174 3pey_A ATP-dependent RNA helic 47.2 5.7 0.0002 43.3 1.2 27 210-236 35-61 (395)
175 3h1t_A Type I site-specific re 46.7 6.9 0.00024 46.4 1.9 27 210-237 190-216 (590)
176 3nmd_A CGMP dependent protein 46.6 53 0.0018 29.7 7.1 26 564-589 42-67 (72)
177 2zan_A Vacuolar protein sortin 46.4 5.1 0.00017 46.4 0.7 51 186-236 129-184 (444)
178 2i4i_A ATP-dependent RNA helic 46.3 7 0.00024 43.3 1.8 25 210-236 45-69 (417)
179 1m1j_C Fibrinogen gamma chain; 46.3 1.1E+02 0.0039 35.6 11.8 22 484-505 44-65 (409)
180 2b9c_A Striated-muscle alpha t 46.1 79 0.0027 31.9 9.2 26 629-654 102-127 (147)
181 1s2m_A Putative ATP-dependent 45.5 6.3 0.00022 43.5 1.2 26 209-236 50-75 (400)
182 1ofh_A ATP-dependent HSL prote 44.9 5.7 0.00019 42.2 0.7 18 219-236 50-67 (310)
183 3tnu_A Keratin, type I cytoske 44.9 2.3E+02 0.0079 27.6 13.1 10 580-589 116-125 (131)
184 4h22_A Leucine-rich repeat fli 44.7 1.4E+02 0.0048 28.6 10.0 58 55-116 22-79 (103)
185 2ce7_A Cell division protein F 44.5 10 0.00034 44.9 2.8 47 186-236 11-66 (476)
186 2zqm_A Prefoldin beta subunit 44.5 75 0.0026 29.7 8.4 38 625-662 67-104 (117)
187 3ghg_C Fibrinogen gamma chain; 44.3 2.8E+02 0.0094 32.4 14.5 19 571-589 114-132 (411)
188 2k48_A Nucleoprotein; viral pr 44.3 1.2E+02 0.0042 29.1 9.5 31 567-597 73-103 (107)
189 2x8a_A Nuclear valosin-contain 44.2 4.6 0.00016 43.7 -0.1 49 187-236 6-61 (274)
190 3iox_A AGI/II, PA; alpha helix 43.9 4.9E+02 0.017 31.1 16.6 25 570-594 81-105 (497)
191 3oiy_A Reverse gyrase helicase 43.6 8.5 0.00029 43.1 1.9 25 210-236 29-53 (414)
192 2i1j_A Moesin; FERM, coiled-co 43.4 32 0.0011 41.6 7.0 35 625-659 416-450 (575)
193 1m1j_C Fibrinogen gamma chain; 43.4 1.8E+02 0.0063 33.8 12.9 23 570-592 106-128 (409)
194 3hu3_A Transitional endoplasmi 43.0 8.1 0.00028 45.6 1.7 20 217-236 236-255 (489)
195 1tue_A Replication protein E1; 42.9 5.6 0.00019 42.5 0.3 27 211-237 48-76 (212)
196 1rif_A DAR protein, DNA helica 42.8 5.4 0.00019 42.6 0.2 23 213-237 124-146 (282)
197 3q8t_A Beclin-1; autophagy, AT 42.5 2.2E+02 0.0075 26.7 14.5 26 485-510 8-33 (96)
198 1gmj_A ATPase inhibitor; coile 42.5 37 0.0013 31.5 5.6 36 626-661 42-77 (84)
199 1fxk_A Prefoldin; archaeal pro 42.4 74 0.0025 29.4 7.9 38 624-661 68-105 (107)
200 3a7p_A Autophagy protein 16; c 42.2 3E+02 0.01 28.1 14.2 46 548-593 68-113 (152)
201 1xti_A Probable ATP-dependent 42.2 9.4 0.00032 41.8 2.0 26 209-236 37-62 (391)
202 3e70_C DPA, signal recognition 41.7 16 0.00054 41.0 3.7 19 218-236 128-146 (328)
203 3m50_P N.plumbaginifolia H+-tr 41.0 9.6 0.00033 29.2 1.2 17 876-892 14-30 (31)
204 1sxj_B Activator 1 37 kDa subu 40.9 8.7 0.0003 40.9 1.4 34 200-236 26-59 (323)
205 2db3_A ATP-dependent RNA helic 40.8 9.5 0.00033 43.5 1.8 26 209-236 85-110 (434)
206 3tnu_B Keratin, type II cytosk 40.6 2.6E+02 0.009 27.1 13.9 24 487-510 35-58 (129)
207 1m1j_A Fibrinogen alpha subuni 40.5 3.5E+02 0.012 32.0 14.4 16 577-592 133-148 (491)
208 1ojl_A Transcriptional regulat 40.4 9.3 0.00032 41.9 1.6 33 203-236 10-42 (304)
209 2w83_C C-JUN-amino-terminal ki 40.1 1.2E+02 0.0042 27.6 8.3 39 555-593 37-75 (77)
210 1wt6_A Myotonin-protein kinase 40.0 2.1E+02 0.0071 26.4 9.9 24 571-594 47-70 (81)
211 1c4o_A DNA nucleotide excision 39.8 13 0.00045 45.4 2.9 45 188-237 2-46 (664)
212 3i5x_A ATP-dependent RNA helic 39.8 12 0.0004 43.9 2.4 28 209-236 101-128 (563)
213 2dhr_A FTSH; AAA+ protein, hex 39.7 7.3 0.00025 46.3 0.6 47 186-236 26-81 (499)
214 3hhm_B NISH2 P85alpha; PI3KCA, 39.5 4.9E+02 0.017 29.8 18.0 28 482-509 141-168 (373)
215 3pxi_A Negative regulator of g 39.5 13 0.00043 45.9 2.7 38 199-236 495-538 (758)
216 1qvr_A CLPB protein; coiled co 39.3 6.2 0.00021 49.5 -0.1 42 189-237 168-209 (854)
217 1n0w_A DNA repair protein RAD5 39.1 11 0.00036 38.7 1.7 28 209-236 11-41 (243)
218 3iyk_A VP5; icosahedral virus; 39.1 5.7E+02 0.02 30.6 16.0 51 976-1048 465-515 (526)
219 3fho_A ATP-dependent RNA helic 39.1 9 0.00031 44.8 1.3 27 210-236 149-175 (508)
220 3ol1_A Vimentin; structural ge 38.8 2.8E+02 0.0094 26.8 14.0 21 570-590 84-104 (119)
221 3u1c_A Tropomyosin alpha-1 cha 38.8 2.5E+02 0.0086 26.3 14.9 26 567-592 35-60 (101)
222 4a2p_A RIG-I, retinoic acid in 38.7 11 0.00038 43.3 1.9 25 210-236 15-39 (556)
223 2w0m_A SSO2452; RECA, SSPF, un 38.2 13 0.00043 37.6 2.0 17 221-237 25-41 (235)
224 1ypw_A Transitional endoplasmi 38.0 20 0.00069 44.8 4.2 51 186-236 199-255 (806)
225 3qh9_A Liprin-beta-2; coiled-c 37.7 2.5E+02 0.0084 25.9 10.8 20 632-651 58-77 (81)
226 2e7s_A RAB guanine nucleotide 37.6 62 0.0021 32.4 6.7 25 565-589 106-130 (135)
227 2q6q_A Spindle POLE BODY compo 37.6 1.7E+02 0.0059 26.2 8.7 55 538-592 7-61 (74)
228 3hws_A ATP-dependent CLP prote 37.4 8 0.00027 43.0 0.5 18 219-236 51-68 (363)
229 4gp7_A Metallophosphoesterase; 37.2 9.6 0.00033 37.9 1.0 18 220-237 10-27 (171)
230 3upu_A ATP-dependent DNA helic 37.1 11 0.00039 43.5 1.7 36 197-236 27-62 (459)
231 2eqb_B RAB guanine nucleotide 37.1 2.8E+02 0.0095 26.4 13.3 19 575-593 75-93 (97)
232 2ocy_A RAB guanine nucleotide 37.0 3.6E+02 0.012 27.5 21.6 33 625-657 112-144 (154)
233 3b9q_A Chloroplast SRP recepto 36.8 17 0.00058 40.1 3.0 18 219-236 100-117 (302)
234 2v4h_A NF-kappa-B essential mo 36.7 3E+02 0.01 26.7 11.3 15 486-500 43-57 (110)
235 2v1x_A ATP-dependent DNA helic 36.7 14 0.00049 44.4 2.5 26 209-236 51-76 (591)
236 3tbk_A RIG-I helicase domain; 36.7 13 0.00043 42.7 1.9 24 211-236 13-36 (555)
237 4b3f_X DNA-binding protein smu 36.7 11 0.00036 45.8 1.4 26 210-236 197-222 (646)
238 1r6b_X CLPA protein; AAA+, N-t 36.6 16 0.00055 44.8 3.0 38 199-236 462-505 (758)
239 3iox_A AGI/II, PA; alpha helix 36.6 6.2E+02 0.021 30.2 16.4 42 552-593 70-111 (497)
240 2p5t_B PEZT; postsegregational 36.5 19 0.00066 38.0 3.2 18 219-236 32-49 (253)
241 2r44_A Uncharacterized protein 36.4 7.6 0.00026 42.3 0.1 17 221-237 48-64 (331)
242 1fuu_A Yeast initiation factor 36.4 6.9 0.00024 42.8 -0.3 25 210-236 51-75 (394)
243 3pxg_A Negative regulator of g 36.0 15 0.00053 42.7 2.6 42 189-237 178-219 (468)
244 3b85_A Phosphate starvation-in 35.7 13 0.00044 38.8 1.7 24 211-236 16-39 (208)
245 1l8d_A DNA double-strand break 35.7 2.7E+02 0.0093 25.8 12.2 23 570-592 79-101 (112)
246 1sxj_A Activator 1 95 kDa subu 35.4 8.6 0.0003 45.3 0.3 17 220-236 78-94 (516)
247 1ic2_A Tropomyosin alpha chain 35.4 2.5E+02 0.0085 25.2 11.6 16 574-589 39-54 (81)
248 2fwr_A DNA repair protein RAD2 35.4 14 0.00047 42.2 2.0 25 210-236 101-125 (472)
249 3lw7_A Adenylate kinase relate 35.3 12 0.0004 35.8 1.2 16 221-236 3-18 (179)
250 1t6f_A Geminin; coiled-coil, c 35.2 47 0.0016 26.2 4.2 26 630-655 9-34 (37)
251 1qvr_A CLPB protein; coiled co 35.1 15 0.00053 45.9 2.5 37 200-236 563-605 (854)
252 4fi5_A Nucleoprotein; structur 34.8 1.8E+02 0.006 28.3 9.0 33 567-599 60-92 (113)
253 2cvh_A DNA repair and recombin 34.2 14 0.00048 37.1 1.7 28 210-237 8-38 (220)
254 3u59_A Tropomyosin beta chain; 33.7 3E+02 0.01 25.7 14.9 24 569-592 37-60 (101)
255 2px0_A Flagellar biosynthesis 33.7 13 0.00045 40.9 1.4 17 221-237 107-123 (296)
256 4a74_A DNA repair and recombin 33.5 17 0.00058 36.7 2.1 28 209-236 12-42 (231)
257 3tr0_A Guanylate kinase, GMP k 33.2 12 0.00041 37.4 1.0 16 221-236 9-24 (205)
258 3c8u_A Fructokinase; YP_612366 32.9 21 0.00073 36.3 2.8 20 217-236 20-39 (208)
259 1rz3_A Hypothetical protein rb 32.9 21 0.00072 36.2 2.7 20 217-236 20-39 (201)
260 2ic6_A Nucleocapsid protein; h 32.9 2.1E+02 0.007 26.3 8.7 31 567-597 43-73 (78)
261 2yhs_A FTSY, cell division pro 32.8 19 0.00065 43.0 2.6 18 219-236 293-310 (503)
262 1gmj_A ATPase inhibitor; coile 32.7 1.3E+02 0.0046 27.8 7.6 42 546-590 38-79 (84)
263 3nmd_A CGMP dependent protein 32.3 1.6E+02 0.0056 26.5 7.9 26 568-593 39-64 (72)
264 3dm5_A SRP54, signal recogniti 32.1 23 0.0008 41.5 3.2 21 217-237 98-118 (443)
265 2gza_A Type IV secretion syste 32.0 13 0.00045 41.9 1.1 20 215-236 173-192 (361)
266 2jee_A YIIU; FTSZ, septum, coi 32.0 3.1E+02 0.01 25.3 11.1 17 487-503 12-28 (81)
267 1go4_E MAD1 (mitotic arrest de 32.0 1.3E+02 0.0045 28.7 7.6 27 567-593 17-43 (100)
268 4gl2_A Interferon-induced heli 31.7 16 0.00053 44.0 1.7 25 210-236 15-39 (699)
269 1w36_D RECD, exodeoxyribonucle 31.6 12 0.00041 45.2 0.7 18 220-237 165-182 (608)
270 3tau_A Guanylate kinase, GMP k 31.5 14 0.00049 37.7 1.2 17 220-236 9-25 (208)
271 1um8_A ATP-dependent CLP prote 31.5 13 0.00044 41.5 0.9 18 219-236 72-89 (376)
272 1hv8_A Putative ATP-dependent 31.3 13 0.00045 39.9 0.9 25 211-236 37-61 (367)
273 3sqw_A ATP-dependent RNA helic 31.3 19 0.00066 42.6 2.4 28 209-236 50-77 (579)
274 3a7p_A Autophagy protein 16; c 31.1 3E+02 0.01 28.1 10.5 63 62-124 67-132 (152)
275 4ag6_A VIRB4 ATPase, type IV s 30.7 11 0.00039 42.3 0.3 19 216-236 34-52 (392)
276 2og2_A Putative signal recogni 30.6 25 0.00085 40.0 3.0 18 219-236 157-174 (359)
277 3cvf_A Homer-3, homer protein 30.5 2.4E+02 0.0081 25.9 8.8 33 58-90 8-40 (79)
278 1kgd_A CASK, peripheral plasma 30.4 15 0.0005 36.8 1.0 16 221-236 7-22 (180)
279 2qag_C Septin-7; cell cycle, c 30.2 16 0.00056 42.3 1.5 24 213-236 25-48 (418)
280 3kl4_A SRP54, signal recogniti 29.9 24 0.00084 41.2 2.9 19 219-237 97-115 (433)
281 1yks_A Genome polyprotein [con 29.8 19 0.00063 41.6 1.9 21 214-236 5-25 (440)
282 1ly1_A Polynucleotide kinase; 29.6 17 0.00057 35.3 1.2 17 220-236 3-19 (181)
283 1zp6_A Hypothetical protein AT 29.5 15 0.0005 36.4 0.8 17 220-236 10-26 (191)
284 2dr3_A UPF0273 protein PH0284; 29.2 17 0.00059 37.1 1.3 17 220-236 24-40 (247)
285 1e9r_A Conjugal transfer prote 29.1 14 0.00047 42.1 0.6 18 219-236 53-70 (437)
286 2ykg_A Probable ATP-dependent 28.8 21 0.00072 42.8 2.2 24 211-236 22-45 (696)
287 4b4t_I 26S protease regulatory 28.7 17 0.0006 42.6 1.4 50 187-236 178-233 (437)
288 3trf_A Shikimate kinase, SK; a 28.7 18 0.0006 35.7 1.2 16 221-236 7-22 (185)
289 3he5_B Synzip2; heterodimeric 28.6 2.4E+02 0.0083 23.1 7.6 20 573-592 28-47 (52)
290 2oqq_A Transcription factor HY 28.3 1.6E+02 0.0055 24.0 6.4 28 565-592 13-40 (42)
291 4emc_A Monopolin complex subun 28.3 2.5E+02 0.0087 29.5 9.7 24 482-505 14-37 (190)
292 3swk_A Vimentin; cytoskeleton, 28.3 3.5E+02 0.012 24.8 10.7 20 570-589 64-83 (86)
293 3efg_A Protein SLYX homolog; x 28.2 1.3E+02 0.0046 27.2 6.8 47 547-593 13-59 (78)
294 3l4q_C Phosphatidylinositol 3- 28.1 5.2E+02 0.018 26.7 17.0 46 546-591 101-146 (170)
295 3hhm_B NISH2 P85alpha; PI3KCA, 27.9 7.3E+02 0.025 28.4 18.2 41 483-524 135-175 (373)
296 2j41_A Guanylate kinase; GMP, 27.5 17 0.0006 36.2 1.0 16 221-236 8-23 (207)
297 2v66_B Nuclear distribution pr 27.4 4.3E+02 0.015 25.6 17.0 24 488-511 3-26 (111)
298 1qhx_A CPT, protein (chloramph 27.2 19 0.00066 35.1 1.2 17 220-236 4-20 (178)
299 1rj9_A FTSY, signal recognitio 27.1 18 0.00062 40.0 1.1 16 221-236 104-119 (304)
300 3a00_A Guanylate kinase, GMP k 27.0 17 0.00058 36.4 0.8 15 222-236 4-18 (186)
301 2qnr_A Septin-2, protein NEDD5 26.9 17 0.0006 39.8 0.9 23 214-236 13-35 (301)
302 2ehv_A Hypothetical protein PH 26.8 18 0.00062 37.0 1.0 17 221-237 32-48 (251)
303 1wp9_A ATP-dependent RNA helic 26.7 19 0.00067 39.7 1.3 24 211-237 18-41 (494)
304 2ic9_A Nucleocapsid protein; h 26.7 3.1E+02 0.011 26.0 9.0 33 567-599 43-75 (96)
305 1r6b_X CLPA protein; AAA+, N-t 26.6 21 0.0007 43.9 1.6 28 210-237 198-225 (758)
306 1oyw_A RECQ helicase, ATP-depe 26.5 14 0.00049 43.5 0.1 26 209-236 32-57 (523)
307 3lfu_A DNA helicase II; SF1 he 26.5 18 0.00062 43.1 1.0 19 219-237 22-40 (647)
308 2l5g_B Putative uncharacterize 26.4 1.4E+02 0.0047 24.4 5.7 31 560-590 7-37 (42)
309 1lvg_A Guanylate kinase, GMP k 26.4 17 0.0006 37.0 0.7 16 221-236 6-21 (198)
310 3mq7_A Bone marrow stromal ant 26.4 4.7E+02 0.016 25.6 15.0 20 642-661 92-111 (121)
311 1ye8_A Protein THEP1, hypothet 26.3 19 0.00065 36.5 1.0 15 222-236 3-17 (178)
312 3sop_A Neuronal-specific septi 26.2 20 0.00069 38.8 1.2 19 218-236 1-19 (270)
313 2orw_A Thymidine kinase; TMTK, 26.1 16 0.00056 37.1 0.5 17 221-237 5-21 (184)
314 2bdt_A BH3686; alpha-beta prot 26.1 19 0.00066 35.7 1.0 16 221-236 4-19 (189)
315 2d7d_A Uvrabc system protein B 26.0 31 0.0011 42.1 3.0 49 186-238 3-51 (661)
316 3m91_A Proteasome-associated A 25.8 2.1E+02 0.0073 24.1 7.1 38 551-588 12-49 (51)
317 4a4z_A Antiviral helicase SKI2 25.7 26 0.00087 45.0 2.2 73 1057-1145 918-991 (997)
318 2b8t_A Thymidine kinase; deoxy 25.7 19 0.00064 38.4 0.8 19 220-238 13-31 (223)
319 4fla_A Regulation of nuclear P 25.6 5.3E+02 0.018 26.0 11.7 23 566-588 111-133 (152)
320 3lnc_A Guanylate kinase, GMP k 25.6 22 0.00075 36.7 1.3 16 221-236 29-44 (231)
321 1moz_A ARL1, ADP-ribosylation 25.5 30 0.001 33.4 2.2 29 208-236 6-35 (183)
322 3bas_A Myosin heavy chain, str 25.5 3.9E+02 0.013 24.4 11.2 20 487-506 13-32 (89)
323 2gk6_A Regulator of nonsense t 25.4 22 0.00075 43.0 1.5 25 211-237 189-213 (624)
324 1znw_A Guanylate kinase, GMP k 25.4 20 0.00069 36.5 1.0 21 214-236 17-37 (207)
325 2r8r_A Sensor protein; KDPD, P 25.2 19 0.00064 38.8 0.7 19 219-237 6-24 (228)
326 3iij_A Coilin-interacting nucl 24.9 21 0.00072 35.1 1.0 16 221-236 13-28 (180)
327 1deb_A APC protein, adenomatou 24.9 3E+02 0.01 23.3 7.6 33 485-517 7-39 (54)
328 3pxi_A Negative regulator of g 24.8 30 0.001 42.6 2.6 42 189-237 178-219 (758)
329 1uf9_A TT1252 protein; P-loop, 24.6 26 0.00088 34.8 1.6 22 215-236 4-25 (203)
330 2oca_A DAR protein, ATP-depend 24.5 17 0.00059 41.9 0.3 35 194-237 112-146 (510)
331 4a2q_A RIG-I, retinoic acid in 24.1 27 0.00092 43.2 1.9 25 210-236 256-280 (797)
332 2zj8_A DNA helicase, putative 23.9 22 0.00075 43.4 1.1 21 214-236 36-56 (720)
333 1t6f_A Geminin; coiled-coil, c 23.8 1E+02 0.0036 24.3 4.4 26 476-501 9-34 (37)
334 3uie_A Adenylyl-sulfate kinase 23.7 27 0.00093 35.2 1.6 20 217-236 23-42 (200)
335 4b4t_H 26S protease regulatory 23.6 20 0.0007 42.4 0.7 50 187-236 205-260 (467)
336 3vaa_A Shikimate kinase, SK; s 23.4 25 0.00084 35.5 1.2 16 221-236 27-42 (199)
337 2oqq_A Transcription factor HY 23.3 2.3E+02 0.0078 23.2 6.4 33 553-585 8-40 (42)
338 1l8d_A DNA double-strand break 23.2 4.5E+02 0.015 24.3 11.0 26 570-595 18-43 (112)
339 1j8m_F SRP54, signal recogniti 23.1 53 0.0018 36.1 3.9 18 220-237 99-116 (297)
340 4a2w_A RIG-I, retinoic acid in 23.0 27 0.00091 44.4 1.6 31 915-946 897-928 (936)
341 2v6i_A RNA helicase; membrane, 23.0 29 0.00099 39.8 1.8 16 221-236 4-19 (431)
342 3kb2_A SPBC2 prophage-derived 22.9 27 0.00091 33.6 1.3 16 221-236 3-18 (173)
343 1kht_A Adenylate kinase; phosp 22.8 26 0.00089 34.3 1.2 16 221-236 5-20 (192)
344 2pt7_A CAG-ALFA; ATPase, prote 22.8 19 0.00066 40.1 0.3 19 216-236 170-188 (330)
345 1lkx_A Myosin IE heavy chain; 22.6 31 0.0011 42.7 2.1 21 216-236 91-111 (697)
346 1gm5_A RECG; helicase, replica 22.5 23 0.00079 44.3 0.9 39 195-236 368-406 (780)
347 1ik9_A DNA repair protein XRCC 22.5 5.3E+02 0.018 27.3 11.2 53 62-114 131-191 (213)
348 1gd2_E Transcription factor PA 22.5 1.5E+02 0.0053 26.4 5.9 38 548-592 29-66 (70)
349 3kta_A Chromosome segregation 22.4 24 0.00082 34.7 0.8 16 221-236 28-43 (182)
350 1ci6_A Transcription factor AT 22.3 2.9E+02 0.01 23.8 7.6 32 550-581 25-56 (63)
351 2ze6_A Isopentenyl transferase 22.3 26 0.00091 37.2 1.2 15 221-235 3-17 (253)
352 1knq_A Gluconate kinase; ALFA/ 21.8 26 0.00089 34.2 1.0 17 220-236 9-25 (175)
353 1z6g_A Guanylate kinase; struc 21.7 22 0.00075 36.8 0.4 15 222-236 26-40 (218)
354 1wt6_A Myotonin-protein kinase 21.6 4.8E+02 0.016 24.1 10.0 42 548-589 31-72 (81)
355 1tev_A UMP-CMP kinase; ploop, 21.4 29 0.00099 33.9 1.2 17 220-236 4-20 (196)
356 1w9i_A Myosin II heavy chain; 21.4 34 0.0012 42.9 2.1 21 216-236 169-189 (770)
357 4etp_A Kinesin-like protein KA 21.3 2.4E+02 0.0081 32.6 8.9 44 546-589 15-58 (403)
358 1kag_A SKI, shikimate kinase I 21.3 27 0.00093 33.9 1.0 16 221-236 6-21 (173)
359 2v26_A Myosin VI; calmodulin-b 21.2 34 0.0012 42.9 2.0 21 216-236 137-157 (784)
360 2i3b_A HCR-ntpase, human cance 21.1 23 0.00078 36.4 0.4 16 221-236 3-18 (189)
361 1xx6_A Thymidine kinase; NESG, 21.1 23 0.00078 36.7 0.4 18 221-238 10-27 (191)
362 1jcd_A Major outer membrane li 21.1 3.6E+02 0.012 22.8 7.6 31 57-87 5-35 (52)
363 1gku_B Reverse gyrase, TOP-RG; 21.1 34 0.0011 44.2 2.0 23 210-234 64-86 (1054)
364 2z83_A Helicase/nucleoside tri 21.0 32 0.0011 39.8 1.6 19 216-236 20-38 (459)
365 2b9c_A Striated-muscle alpha t 21.0 6.4E+02 0.022 25.3 13.2 20 573-592 98-117 (147)
366 2fna_A Conserved hypothetical 20.9 29 0.00098 37.2 1.2 17 220-236 31-47 (357)
367 2va8_A SSO2462, SKI2-type heli 20.8 36 0.0012 41.3 2.1 21 214-236 43-63 (715)
368 1zu4_A FTSY; GTPase, signal re 20.8 41 0.0014 37.4 2.4 18 220-237 106-123 (320)
369 2rhm_A Putative kinase; P-loop 20.7 29 0.001 34.1 1.1 17 220-236 6-22 (193)
370 3t5d_A Septin-7; GTP-binding p 20.7 29 0.001 37.0 1.2 21 216-236 5-25 (274)
371 1kk8_A Myosin heavy chain, str 20.5 36 0.0012 43.1 2.0 21 216-236 166-186 (837)
372 2whx_A Serine protease/ntpase/ 20.5 40 0.0014 40.9 2.3 24 211-236 180-203 (618)
373 1x8y_A Lamin A/C; structural p 20.5 4.9E+02 0.017 23.7 9.5 19 489-507 4-22 (86)
374 1g8x_A Myosin II heavy chain f 20.4 35 0.0012 44.1 1.9 33 203-235 155-188 (1010)
375 3he5_B Synzip2; heterodimeric 20.4 3.2E+02 0.011 22.4 6.7 19 537-555 6-24 (52)
376 1odf_A YGR205W, hypothetical 3 20.4 51 0.0017 36.1 3.0 20 217-236 29-48 (290)
377 2efr_A General control protein 20.4 6.9E+02 0.024 25.4 20.4 31 489-519 22-52 (155)
378 1vma_A Cell division protein F 20.3 33 0.0011 38.0 1.5 18 219-236 104-121 (306)
379 3cm0_A Adenylate kinase; ATP-b 20.2 32 0.0011 33.8 1.2 16 221-236 6-21 (186)
380 3cf2_A TER ATPase, transitiona 20.2 52 0.0018 41.4 3.4 51 186-236 199-255 (806)
381 3asz_A Uridine kinase; cytidin 20.2 28 0.00097 35.0 0.9 16 221-236 8-23 (211)
382 1f2t_A RAD50 ABC-ATPase; DNA d 20.1 33 0.0011 33.7 1.3 17 221-237 25-41 (149)
383 2ycu_A Non muscle myosin 2C, a 20.1 37 0.0013 43.7 2.0 21 216-236 143-163 (995)
No 1
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-85 Score=752.38 Aligned_cols=343 Identities=34% Similarity=0.520 Sum_probs=285.2
Q ss_pred HHHHHHHhcChhHHHHhhhhhhhccCCCCEEEEEeeCCCCCC-CC--CceEee--cCC----cEEEEecCCCccCCCCce
Q 001022 117 VALEAEARISPLINEKKRLFNDLLTAKGNIKVFCRTRPLFED-EG--PSVVEF--TDD----CTIRVNTGDDTISNPKKD 187 (1186)
Q Consensus 117 ~~~E~e~r~~~~~~eRkkLhN~l~elkGnIRVf~RVRPl~~~-E~--~svV~~--~d~----~tI~v~~~~~~~~~~~k~ 187 (1186)
...+..+++..+..+||+|||+++|+||||||||||||+++. |. ...+.+ .++ ..+.+..... ....+.
T Consensus 32 ~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~ 109 (403)
T 4etp_A 32 GMKELNEILIKEETVRRTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQN--TAQVHE 109 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSS--SCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCC--CcCceE
Confidence 333444455566788999999999999999999999999866 32 122222 221 2344433221 123588
Q ss_pred eecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCccccccc
Q 001022 188 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARF 267 (1186)
Q Consensus 188 FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y 267 (1186)
|+||+||+++++|++||++|.|+|+++++|||+||||||||||||||||+|+ ++|||||++++||+.+.......+.|
T Consensus 110 F~FD~VF~~~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~lF~~i~~~~~~~~~~ 187 (403)
T 4etp_A 110 FKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDY 187 (403)
T ss_dssp EEESEEECTTCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHHTTTEEE
T ss_pred EEcCEEECCCCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHHHHHHHHhhhccCceE
Confidence 9999999999999999999999999999999999999999999999999996 46999999999999987655667899
Q ss_pred ceeEEEEEEecccccccCCCCCCC--------ceEEEecc---cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC--
Q 001022 268 NFAVTVFELYNEQLRELLPQTGNG--------LAKIRLQS---LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK-- 334 (1186)
Q Consensus 268 ~V~VS~lEIYNE~V~DLL~~~~~~--------~~~i~~~~---~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~-- 334 (1186)
.|+|||+|||||+|+|||.+.... ...++.+. ...+.+++++.|.+++++..+|..|..+|.++.|.
T Consensus 188 ~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N 267 (403)
T 4etp_A 188 KVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASN 267 (403)
T ss_dssp EEEEEEEEEETTEEEETTCC--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHH
T ss_pred EEEEEEEEEecceeeEccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCC
Confidence 999999999999999999876421 12233322 23567899999999999999999999999999885
Q ss_pred --CceeEEEEEEEEEEeeccCCceeeeeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCCC---cc
Q 001022 335 --FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKD---IV 409 (1186)
Q Consensus 335 --SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~~---hV 409 (1186)
|||||+||+|+|.+.+...+....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+.. ||
T Consensus 268 ~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hi 347 (403)
T 4etp_A 268 EHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHI 347 (403)
T ss_dssp HHHHTSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCC
T ss_pred cccCCcccEEEEEEEEeecCCCCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcC
Confidence 8999999999999998888888899999999999999999999999999999999999999999999987554 99
Q ss_pred cCCCCccccccccccCCCccccEEEeeCCCCCCHHHHHHHhHHHHHHhhccccc
Q 001022 410 PYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSL 463 (1186)
Q Consensus 410 PYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRAR~I~~~~ 463 (1186)
||||||||+||||+|||||+|+||+||||+..+++||++||+||+|+++|.+++
T Consensus 348 PyRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~ 401 (403)
T 4etp_A 348 PFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS 401 (403)
T ss_dssp CGGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC----
T ss_pred CcccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCC
Confidence 999999999999999999999999999999999999999999999999987653
No 2
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=5e-85 Score=751.58 Aligned_cols=336 Identities=33% Similarity=0.519 Sum_probs=283.3
Q ss_pred hcChhHHHHhhhhhhhccCCCCEEEEEeeCCCCCCCCC---ceEeecCCcEEEEecCCCccC--CCCceeecceeeCCCC
Q 001022 124 RISPLINEKKRLFNDLLTAKGNIKVFCRTRPLFEDEGP---SVVEFTDDCTIRVNTGDDTIS--NPKKDFEFDRVYGPHV 198 (1186)
Q Consensus 124 r~~~~~~eRkkLhN~l~elkGnIRVf~RVRPl~~~E~~---svV~~~d~~tI~v~~~~~~~~--~~~k~FtFD~VF~p~a 198 (1186)
++..+..+||+|||++++++|||||||||||+++.|.. .++.++++.++.+........ ...+.|+||+||+|++
T Consensus 39 ~l~~~~~~rr~l~n~~~~l~gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~ 118 (412)
T 3u06_A 39 QLFQSNMERKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 118 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCGGGTTSCBCEEEEEETTEEEEECCC-------CCCEEECSEEECTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEEcCCCCchhccCcceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCC
Confidence 34455678999999999999999999999999877632 345667788887765443221 2257899999999999
Q ss_pred ChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEec
Q 001022 199 GQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYN 278 (1186)
Q Consensus 199 sQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYN 278 (1186)
+|++||+.|.|+|+++|+|||+||||||||||||||||+|+++++|||||++++||+.+.......+.|.|+|||+||||
T Consensus 119 ~Q~~Vf~~v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYn 198 (412)
T 3u06_A 119 SQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYN 198 (412)
T ss_dssp CHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEET
T ss_pred CHHHHHHHHHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999998765566789999999999999
Q ss_pred ccccccCCCCCCCceEEEe--c--ccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEee
Q 001022 279 EQLRELLPQTGNGLAKIRL--Q--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNN 350 (1186)
Q Consensus 279 E~V~DLL~~~~~~~~~i~~--~--~~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n 350 (1186)
|+|+|||.+..... .++. + ....+.+++++.|.+++++..+|..|..+|.++.|. |||||+||+|+|.+.+
T Consensus 199 E~i~DLL~~~~~~~-~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~ 277 (412)
T 3u06_A 199 EVLYDLLSNEQKDM-EIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRH 277 (412)
T ss_dssp TEEEETTCCSCCCC-CEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEE
T ss_pred CeeEEcCCCCCCCc-eeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEe
Confidence 99999998755432 2332 2 234567899999999999999999999999999885 8999999999999988
Q ss_pred ccCCceeeeeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCccc
Q 001022 351 LITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKT 430 (1186)
Q Consensus 351 ~~tg~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~~hVPYRdSKLTrLLqDSLGGNSKT 430 (1186)
...+....|+|+|||||||||.. .|.|++|+.+||+||++||+||.+|+.++.||||||||||+||||+|||||+|
T Consensus 278 ~~~~~~~~~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~LLqdsLgGnskt 353 (412)
T 3u06_A 278 AEKQEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKT 353 (412)
T ss_dssp TTTTEEEEEEEEEEECCCCCC--------------CTTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGTSTTCEE
T ss_pred CCCCCEEEEEEEEEECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhccCCCCCccccHHHHHHHHhcCCCceE
Confidence 87787889999999999999974 47899999999999999999999999999999999999999999999999999
Q ss_pred cEEEeeCCCCCCHHHHHHHhHHHHHHhhcccccC
Q 001022 431 LMIVNICPNAANMSETLSSLNFSSRARSTVLSLG 464 (1186)
Q Consensus 431 lMIv~ISPs~~~~~ETLsTLrFAsRAR~I~~~~~ 464 (1186)
+||+||||+..+++||++||+||+|+++|++...
T Consensus 354 ~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~~~ 387 (412)
T 3u06_A 354 LMFINVSPFQDCFQESVKSLRFAASVNSCKMTKA 387 (412)
T ss_dssp EEEEEECCBGGGHHHHHHHHHHHHHHHHHCC---
T ss_pred EEEEEeCCChhhHHHHHHHHHHHHHHhhcccccc
Confidence 9999999999999999999999999999986543
No 3
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.3e-82 Score=720.87 Aligned_cols=328 Identities=38% Similarity=0.541 Sum_probs=250.9
Q ss_pred HhhhhhhhccCCCCEEEEEeeCCCCCCCCCc---eEee--------cCCcEEEEecCCCc--------cCCCCceeecce
Q 001022 132 KKRLFNDLLTAKGNIKVFCRTRPLFEDEGPS---VVEF--------TDDCTIRVNTGDDT--------ISNPKKDFEFDR 192 (1186)
Q Consensus 132 RkkLhN~l~elkGnIRVf~RVRPl~~~E~~s---vV~~--------~d~~tI~v~~~~~~--------~~~~~k~FtFD~ 192 (1186)
-.+|||++++++|||||||||||+++.|... ++.+ .++++|.+..++.. .....+.|+||+
T Consensus 10 ~~~~hn~~~~~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~ 89 (376)
T 2rep_A 10 HSSGLVPRGSLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDR 89 (376)
T ss_dssp -------------CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSE
T ss_pred cccccchhhccCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecE
Confidence 3579999999999999999999999887432 2332 24556666543211 112347899999
Q ss_pred eeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccccCCC----CCCcHHHHHHHHHHhhccCcccccccc
Q 001022 193 VYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSH----DRGLYARCFEELFDLSNSDTTATARFN 268 (1186)
Q Consensus 193 VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~Gs~~----~~GIIPRaledLF~~i~~~~~~~~~y~ 268 (1186)
||+++++|++||+.|.|+|+++|+|||+||||||||||||||||+|++. ++|||||++++||+.+......++.|.
T Consensus 90 Vf~~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~ 169 (376)
T 2rep_A 90 VFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYS 169 (376)
T ss_dssp EECTTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEE
T ss_pred EcCCcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEE
Confidence 9999999999999999999999999999999999999999999999753 689999999999999876656678999
Q ss_pred eeEEEEEEecccccccCCCCCC----CceEEEec----ccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----Cc
Q 001022 269 FAVTVFELYNEQLRELLPQTGN----GLAKIRLQ----SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FN 336 (1186)
Q Consensus 269 V~VS~lEIYNE~V~DLL~~~~~----~~~~i~~~----~~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SS 336 (1186)
|+|||+|||||+|+|||.+... ....++.. ....+.+++++.|.+++++..+|..|.++|.++.|. ||
T Consensus 170 v~vS~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SS 249 (376)
T 2rep_A 170 FVASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSS 249 (376)
T ss_dssp EEEEEEEEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGG
T ss_pred EEEEEEEEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCC
Confidence 9999999999999999987521 22334443 233567899999999999999999999999988774 99
Q ss_pred eeEEEEEEEEEEeeccCCceeeeeeEEEecCCCccccccCCcc----chhHHHHHhhhhhHHHHHHHHhhccCCCcccCC
Q 001022 337 VSHLIIMIHIYYNNLITGENLYSKLSLVDLAGSEGLIAEDDSG----ERITDVLHVMKSLSALGDVLSSLTSRKDIVPYE 412 (1186)
Q Consensus 337 RSH~IftI~V~~~n~~tg~~~~SkL~LVDLAGSER~~ks~a~G----~RLkEa~~INkSLsALg~VIsALa~k~~hVPYR 412 (1186)
|||+||+|+|.+.+...+....|+|+|||||||||+.++++.| +|++|+.+||+||++||+||.+|++++.|||||
T Consensus 250 RSH~Ifti~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYR 329 (376)
T 2rep_A 250 RSHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYR 329 (376)
T ss_dssp GSEEEEEEEEEEEESSSCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTCSCCCGG
T ss_pred CceEEEEEEEEEEecCCCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCCCccCCc
Confidence 9999999999998877777788999999999999999999999 999999999999999999999999999999999
Q ss_pred CCccccccccccCCCccccEEEeeCCCCCCHHHHHHHhHHHHHHhhc
Q 001022 413 NSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST 459 (1186)
Q Consensus 413 dSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRAR~I 459 (1186)
|||||+||||+|||||+|+||+||||+..+++||++||+||+|+++|
T Consensus 330 dSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 330 NSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp GSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999864
No 4
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=1.3e-81 Score=714.36 Aligned_cols=342 Identities=36% Similarity=0.525 Sum_probs=292.4
Q ss_pred ccCCCCEEEEEeeCCCCCCCC---C-ceEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhchHHhHhhhc
Q 001022 140 LTAKGNIKVFCRTRPLFEDEG---P-SVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQSAL 215 (1186)
Q Consensus 140 ~elkGnIRVf~RVRPl~~~E~---~-svV~~~d~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFeeV~PLV~svL 215 (1186)
+|++|||||||||||+.+.|. . .++...+..++...... ...+.|.||+||+++++|++||+.+.|+|++++
T Consensus 1 ee~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~v~~~~~~----~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~lv~~~l 76 (369)
T 3cob_A 1 EDMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKD----DKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAV 76 (369)
T ss_dssp ---CCBCEEEEEECCCCHHHHHTTCCBCEEECSSSEEEEECTT----SCEEEEECSEEECTTCCHHHHHHTTTHHHHHHH
T ss_pred CCCCCCeEEEEECCCCChhhccCCCcEEEEcCCcEEEEecCCC----CCceEEecCEEECCCCCcceehhhhhhhhHhhh
Confidence 479999999999999987551 1 23333444455443221 234899999999999999999999999999999
Q ss_pred CCccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCCC--Cce
Q 001022 216 DGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN--GLA 293 (1186)
Q Consensus 216 dGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~--~~~ 293 (1186)
+|||+||||||||||||||||+|++.++|||||++++||+.+.... ..+.|.|+|||+|||||+|+|||.+... ...
T Consensus 77 ~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l 155 (369)
T 3cob_A 77 DGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDS-NKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKL 155 (369)
T ss_dssp TTCEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTT-TTEEEEEEEEEEEECSSCEEESSCCSSSCCCCC
T ss_pred cCCceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhc-cCceeEEEEEEEEEeCceeeecCCCcccCCcce
Confidence 9999999999999999999999999999999999999999987543 3478999999999999999999987543 234
Q ss_pred EEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccCCceeeeeeEEEecC
Q 001022 294 KIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDLA 367 (1186)
Q Consensus 294 ~i~~~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDLA 367 (1186)
.++.+. ...+.+++++.|.++++++.+|..|..+|.++.|. |||||+||+|+|.+.+...+....|+|+|||||
T Consensus 156 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLA 235 (369)
T 3cob_A 156 DIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLA 235 (369)
T ss_dssp EEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECC
T ss_pred EEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCCCcEEEEEEEEEeCC
Confidence 455443 33567899999999999999999999999998875 899999999999998887777889999999999
Q ss_pred CCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCccccEEEeeCCCCCCHHHHH
Q 001022 368 GSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETL 447 (1186)
Q Consensus 368 GSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~ETL 447 (1186)
||||+.++++.|.+++|+.+||+||++||+||.+|+.++.||||||||||+||||+|||||+|+||+||||+..+++||+
T Consensus 236 GSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl 315 (369)
T 3cob_A 236 GSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETH 315 (369)
T ss_dssp CSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHH
T ss_pred CCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHhhcccccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 448 SSLNFSSRARSTVLSLGNRDTIKKWRDIANDARKELYEREKEIQDLKQEILGLRQAL 504 (1186)
Q Consensus 448 sTLrFAsRAR~I~~~~~n~~~ikk~k~i~~~~~~el~~le~eI~eLkeEI~~Lr~~L 504 (1186)
+||+||+||++|++.+..+... ++|.+|++++..++...
T Consensus 316 ~TLrfA~rak~i~~~~~~n~~~------------------~ei~~L~~~l~~~~~~~ 354 (369)
T 3cob_A 316 NSLTYASRVRSIVNDPSKNVSS------------------KEVARLKKLVSYWKEQA 354 (369)
T ss_dssp HHHHHHHHHHTCBCCCCCCEEC------------------HHHHHHHHHTTCC----
T ss_pred HHHHHHHHHhhcccCCcccCCH------------------HHHHHHHHHHHHHHHhc
Confidence 9999999999998765432211 56677777777666654
No 5
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.8e-80 Score=696.39 Aligned_cols=314 Identities=39% Similarity=0.594 Sum_probs=268.6
Q ss_pred cCCCCEEEEEeeCCCCCCCCC-----ceEee--cCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhchHHhHhh
Q 001022 141 TAKGNIKVFCRTRPLFEDEGP-----SVVEF--TDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQS 213 (1186)
Q Consensus 141 elkGnIRVf~RVRPl~~~E~~-----svV~~--~d~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFeeV~PLV~s 213 (1186)
+++|||||+|||||+.+.|.. .++.+ .++..+.+... ...+.|+||+||+++++|++||+.|.|+|++
T Consensus 1 ~~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~~ 75 (330)
T 2h58_A 1 GSKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHK-----GKPVSFELDKVFSPQASQQDVFQEVQALVTS 75 (330)
T ss_dssp ----CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEET-----TEEEEEECSEEECTTCCHHHHHTTTHHHHHH
T ss_pred CCCCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCC-----CCeeEEecCeEeCCCCCcHhHHHHHHHHHHH
Confidence 478999999999999876632 23444 23344444332 2347899999999999999999999999999
Q ss_pred hcCCccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCCCCce
Q 001022 214 ALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGLA 293 (1186)
Q Consensus 214 vLdGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~~ 293 (1186)
+++|||+||||||||||||||||+|+++++|||||++++||+.++.. ...+.|.|+|||+|||||+|+|||++.+....
T Consensus 76 ~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l 154 (330)
T 2h58_A 76 CIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEK-ASDWEYTITVSAAEIYNEVLRDLLGKEPQEKL 154 (330)
T ss_dssp HHTTCCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTS-CTTEEEEEEEEEEEEETTEEEETTSCSSCCCC
T ss_pred HhCCCEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcc-cCCceEEEEEEEEEEECCChhhcccccccccc
Confidence 99999999999999999999999999999999999999999998753 45678999999999999999999987654434
Q ss_pred EEEe--c--ccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccCCceeeeeeEEEe
Q 001022 294 KIRL--Q--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVD 365 (1186)
Q Consensus 294 ~i~~--~--~~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~LVD 365 (1186)
.++. + ....+.+++++.|.++++++.+|..|.++|.++.|. |||||+||+|+|.+.+...+....|+|+|||
T Consensus 155 ~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVD 234 (330)
T 2h58_A 155 EIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVD 234 (330)
T ss_dssp CCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred eEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCCCcEEEEEEEEEe
Confidence 4443 2 223567899999999999999999999999998874 8999999999999988777778899999999
Q ss_pred cCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCccccEEEeeCCCCCCHHH
Q 001022 366 LAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSE 445 (1186)
Q Consensus 366 LAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~E 445 (1186)
||||||..++++.|.|++|+.+||+||++||+||.+|+.++.||||||||||+||||+|||||+|+||+||||+..+++|
T Consensus 235 LAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~E 314 (330)
T 2h58_A 235 LAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSE 314 (330)
T ss_dssp CCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHH
T ss_pred CCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHhhcc
Q 001022 446 TLSSLNFSSRARSTV 460 (1186)
Q Consensus 446 TLsTLrFAsRAR~I~ 460 (1186)
|++||+||+||++|+
T Consensus 315 Tl~TL~fA~rak~i~ 329 (330)
T 2h58_A 315 TLYSLKFAERVRSVE 329 (330)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhhCc
Confidence 999999999999975
No 6
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=1.1e-80 Score=702.74 Aligned_cols=319 Identities=35% Similarity=0.549 Sum_probs=258.3
Q ss_pred ccCCCCEEEEEeeCCCCCCCCC----ceEeecC----CcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhchHHhH
Q 001022 140 LTAKGNIKVFCRTRPLFEDEGP----SVVEFTD----DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFV 211 (1186)
Q Consensus 140 ~elkGnIRVf~RVRPl~~~E~~----svV~~~d----~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFeeV~PLV 211 (1186)
+++||||||||||||+++.|.. .++...+ ...+.+..+.. ....+.|+||+||+++++|++||++|.|+|
T Consensus 1 m~lkgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~f~FD~Vf~~~~~Q~~vf~~v~~lv 78 (349)
T 3t0q_A 1 MALRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEG--RILSYNFQFDMIFEPSHTNKEIFEEIRQLV 78 (349)
T ss_dssp ----CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC----CEEEEEEESEEECTTCCHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCC--cccceeeecCEEECCCccHHHHHHHHHHHH
Confidence 4789999999999999987743 2233222 22455544322 123478999999999999999999999999
Q ss_pred hhhcCCccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCCC-
Q 001022 212 QSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN- 290 (1186)
Q Consensus 212 ~svLdGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~- 290 (1186)
+++++|||+||||||||||||||||+|+ ++|||||++++||+.+......++.|.|.|||+|||||+|+|||.+...
T Consensus 79 ~~~l~G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 156 (349)
T 3t0q_A 79 QSSLDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSH 156 (349)
T ss_dssp HGGGTTCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC-----
T ss_pred HHHHCCcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhccccccccc
Confidence 9999999999999999999999999996 4699999999999988766666789999999999999999999986531
Q ss_pred ---------CceEEEecc---cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccCC
Q 001022 291 ---------GLAKIRLQS---LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITG 354 (1186)
Q Consensus 291 ---------~~~~i~~~~---~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~tg 354 (1186)
....++.+. ...+.+++++.|.+++++..+|..|.++|.++.|. |||||+||+|+|.+.+...+
T Consensus 157 ~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~ 236 (349)
T 3t0q_A 157 DNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTG 236 (349)
T ss_dssp ----------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTTC
T ss_pred cccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCCC
Confidence 122233322 24577899999999999999999999999998874 99999999999999988888
Q ss_pred ceeeeeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCC---CcccCCCCccccccccccCCCcccc
Q 001022 355 ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTL 431 (1186)
Q Consensus 355 ~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~---~hVPYRdSKLTrLLqDSLGGNSKTl 431 (1186)
....|+|+|||||||||+.+++++|+|++|+.+||+||++||+||.+|++++ .||||||||||+||||+|||||+|+
T Consensus 237 ~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~ 316 (349)
T 3t0q_A 237 ETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTL 316 (349)
T ss_dssp CEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEE
T ss_pred CeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEE
Confidence 8889999999999999999999999999999999999999999999998765 4999999999999999999999999
Q ss_pred EEEeeCCCCCCHHHHHHHhHHHHHHhhcccc
Q 001022 432 MIVNICPNAANMSETLSSLNFSSRARSTVLS 462 (1186)
Q Consensus 432 MIv~ISPs~~~~~ETLsTLrFAsRAR~I~~~ 462 (1186)
||+||||+..+++||++||+||+|+++|++.
T Consensus 317 mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~ 347 (349)
T 3t0q_A 317 MFVNIPPDPNHISETLNSLRFASKVNSTKIA 347 (349)
T ss_dssp EEEEECCCGGGHHHHHHHHHHHHHHHC----
T ss_pred EEEEeCCchhhHHHHHHHHHHHHHhhhcccC
Confidence 9999999999999999999999999998754
No 7
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=4.5e-80 Score=699.18 Aligned_cols=322 Identities=29% Similarity=0.445 Sum_probs=247.6
Q ss_pred hhhhhccCCCCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCcc----------------CCCCceeecceee
Q 001022 135 LFNDLLTAKGNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTI----------------SNPKKDFEFDRVY 194 (1186)
Q Consensus 135 LhN~l~elkGnIRVf~RVRPl~~~E----~~svV~~~d~~tI~v~~~~~~~----------------~~~~k~FtFD~VF 194 (1186)
|++..++++|||||+|||||+++.| ...+|.+.++..+.+.+..... ....+.|.||+||
T Consensus 1 ~~~~~~d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf 80 (355)
T 3lre_A 1 MSVTEEDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVF 80 (355)
T ss_dssp -----------CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEE
T ss_pred CCcChhhccCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEE
Confidence 4678889999999999999998765 2456777777666655432110 1234689999999
Q ss_pred CCCCChhhHHhch-HHhHhhhcCCccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEE
Q 001022 195 GPHVGQAELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTV 273 (1186)
Q Consensus 195 ~p~asQeeVFeeV-~PLV~svLdGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~ 273 (1186)
+++++|++||+.+ .|+|+++++|||+||||||||||||||||+|++.++|||||++++||+.+.... ....|.|.|||
T Consensus 81 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~-~~~~~~v~vS~ 159 (355)
T 3lre_A 81 DETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIK-EEKICSTAVSY 159 (355)
T ss_dssp CTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTT-TTEEEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhc-cCceEEEEEEE
Confidence 9999999999986 899999999999999999999999999999999999999999999999887543 35689999999
Q ss_pred EEEecccccccCCCCCCCceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEE
Q 001022 274 FELYNEQLRELLPQTGNGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIY 347 (1186)
Q Consensus 274 lEIYNE~V~DLL~~~~~~~~~i~~~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~ 347 (1186)
+|||||+|+|||.+.. ...++.+. ...+.+++++.|.++++++.+|..|.++|.++.|. |||||+||+|++.
T Consensus 160 ~EIYnE~i~DLL~~~~--~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~ 237 (355)
T 3lre_A 160 LEVYNEQIRDLLVNSG--PLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLR 237 (355)
T ss_dssp EEEETTEEEESSSCCC--CBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEE
T ss_pred EEEECCEEEECcCCCC--CceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEE
Confidence 9999999999998754 34455443 34577999999999999999999999999988874 9999999999999
Q ss_pred EeeccC---CceeeeeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccC---CCcccCCCCccccccc
Q 001022 348 YNNLIT---GENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR---KDIVPYENSMLTKVLA 421 (1186)
Q Consensus 348 ~~n~~t---g~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k---~~hVPYRdSKLTrLLq 421 (1186)
+.+... .....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+++ ..||||||||||+|||
T Consensus 238 ~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~ 317 (355)
T 3lre_A 238 QQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLK 317 (355)
T ss_dssp EEETTSCTTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTT
T ss_pred EecCCCCCCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHH
Confidence 876532 2345799999999999999999999999999999999999999999999874 3599999999999999
Q ss_pred cccCCCccccEEEeeCCCCCCHHHHHHHhHHHHHHhhc
Q 001022 422 DSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARST 459 (1186)
Q Consensus 422 DSLGGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRAR~I 459 (1186)
|+|||||+|+||+||||+..+++||++||+||+||++|
T Consensus 318 dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 318 DSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp TTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred HhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999875
No 8
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=9.6e-80 Score=694.67 Aligned_cols=318 Identities=36% Similarity=0.554 Sum_probs=263.5
Q ss_pred CCCCEEEEEeeCCCCC-CC--CCceEeec--C----CcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhchHHhHh
Q 001022 142 AKGNIKVFCRTRPLFE-DE--GPSVVEFT--D----DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDVQPFVQ 212 (1186)
Q Consensus 142 lkGnIRVf~RVRPl~~-~E--~~svV~~~--d----~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFeeV~PLV~ 212 (1186)
|||||||||||||+++ .| ...++.+. + ..++.+..+.. ....+.|+||+||+++++|++||++|.|+|+
T Consensus 1 lk~nIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~ 78 (347)
T 1f9v_A 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQN--TAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQ 78 (347)
T ss_dssp --CEEEEEEEECCCCTTTCCCTTEEEEECCCBTTTTBEEEEEEEGGG--TTCEEEEEESEEECTTCCHHHHHHHHHHHHG
T ss_pred CCCCeEEEEEeCCCCcccccCCCceEEEecccCCCCceEEEEecCCC--CcCceEEeeCEEECCCCCHHHHHHHHHHHHH
Confidence 6899999999999987 34 22333332 1 13455543321 2345899999999999999999999999999
Q ss_pred hhcCCccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCCCC-
Q 001022 213 SALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNG- 291 (1186)
Q Consensus 213 svLdGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~- 291 (1186)
++++|||+||||||||||||||||+|+ ++|||||++++||+.+.......+.|.|+|||+|||||+|+|||.+....
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 156 (347)
T 1f9v_A 79 SSLDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNK 156 (347)
T ss_dssp GGGGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC------
T ss_pred HhcCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCccccc
Confidence 999999999999999999999999996 57999999999999987655567899999999999999999999876432
Q ss_pred -------ceEEEecc---cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccCCcee
Q 001022 292 -------LAKIRLQS---LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENL 357 (1186)
Q Consensus 292 -------~~~i~~~~---~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~tg~~~ 357 (1186)
...++.+. ...+.+++++.|.++++++.+|..|..+|.++.|. |||||+||+|+|.+.+...+...
T Consensus 157 ~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~ 236 (347)
T 1f9v_A 157 EDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHS 236 (347)
T ss_dssp -------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC--CCEE
T ss_pred cccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCCCcee
Confidence 12233322 23566899999999999999999999999988874 89999999999999887778888
Q ss_pred eeeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCC---CcccCCCCccccccccccCCCccccEEE
Q 001022 358 YSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK---DIVPYENSMLTKVLADSLGESSKTLMIV 434 (1186)
Q Consensus 358 ~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~---~hVPYRdSKLTrLLqDSLGGNSKTlMIv 434 (1186)
.|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++ .||||||||||+||||+|||||+|+||+
T Consensus 237 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~ 316 (347)
T 1f9v_A 237 YGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFV 316 (347)
T ss_dssp EEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEE
T ss_pred eeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEE
Confidence 9999999999999999999999999999999999999999999999865 8999999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHhHHHHHHhhccccc
Q 001022 435 NICPNAANMSETLSSLNFSSRARSTVLSL 463 (1186)
Q Consensus 435 ~ISPs~~~~~ETLsTLrFAsRAR~I~~~~ 463 (1186)
||||+..+++||++||+||+||++|.+++
T Consensus 317 ~vsP~~~~~~ETl~TLrfA~r~~~i~~~~ 345 (347)
T 1f9v_A 317 NISPSSSHINETLNSLRFASKVNSTRLVS 345 (347)
T ss_dssp EECCSGGGHHHHHHHHHHHHHHCCTTTC-
T ss_pred EeCCccccHHHHHHHHHHHHHHhhhccCC
Confidence 99999999999999999999999987653
No 9
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=2e-79 Score=686.75 Aligned_cols=308 Identities=36% Similarity=0.564 Sum_probs=277.2
Q ss_pred cCCCCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHhHhhhc
Q 001022 141 TAKGNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSAL 215 (1186)
Q Consensus 141 elkGnIRVf~RVRPl~~~E----~~svV~~~d~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFeeV-~PLV~svL 215 (1186)
..++||||+|||||+++.| ...++.++++.++.+. .+.|.||+||+++++|++||+.+ .|+|++++
T Consensus 4 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~---------~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l 74 (325)
T 1bg2_A 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA---------SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVL 74 (325)
T ss_dssp CSSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEET---------TEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CCCCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEEC---------CEEEECCeEeCCCCCHHHHHHHHhhhhHHHHh
Confidence 4579999999999998766 2346667777777652 37899999999999999999985 89999999
Q ss_pred CCccEEEEeeccCCCCcccccccCCC---CCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCCCCc
Q 001022 216 DGYNVSIFAYGQTHSGKTHTMEGSSH---DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNGL 292 (1186)
Q Consensus 216 dGyNvcIfAYGQTGSGKTyTM~Gs~~---~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~~ 292 (1186)
+|||+||||||||||||||||+|+.. ++|||||++++||+.+... ...+.|.|+|||+|||||+|+|||++.....
T Consensus 75 ~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~l 153 (325)
T 1bg2_A 75 EGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSM-DENLEFHIKVSYFEIYLDKIRDLLDVSKTNL 153 (325)
T ss_dssp TTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHH-CSSEEEEEEEEEEEEETTEEEESSCTTCCSB
T ss_pred CCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhc-cCCceEEEEEEEEEEecCeeeecccCCCCCc
Confidence 99999999999999999999999754 4699999999999988643 3468899999999999999999998765443
Q ss_pred eEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccCCceeeeeeEEEec
Q 001022 293 AKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSLVDL 366 (1186)
Q Consensus 293 ~~i~~~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~LVDL 366 (1186)
.++.+. ...+.+++++.|.++++++.+|..|..+|.++.|. |||||+||+|+|.+.+...+....|+|+||||
T Consensus 154 -~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skl~lVDL 232 (325)
T 1bg2_A 154 -SVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDL 232 (325)
T ss_dssp -CEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEEC
T ss_pred -eEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCCCcEEEEEEEEEEC
Confidence 344333 23566899999999999999999999999999886 89999999999999887777778899999999
Q ss_pred CCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCccccEEEeeCCCCCCHHHH
Q 001022 367 AGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSET 446 (1186)
Q Consensus 367 AGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~ET 446 (1186)
|||||..++++.|.+++|+.+||+||++||+||.+|+++..||||||||||+||||+|||||+|+||+||||+..+++||
T Consensus 233 AGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ET 312 (325)
T 1bg2_A 233 AGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESET 312 (325)
T ss_dssp CCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHH
T ss_pred CCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHhhc
Q 001022 447 LSSLNFSSRARST 459 (1186)
Q Consensus 447 LsTLrFAsRAR~I 459 (1186)
++||+||+||++|
T Consensus 313 l~TL~fa~rak~I 325 (325)
T 1bg2_A 313 KSTLLFGQRAKTI 325 (325)
T ss_dssp HHHHHHHHTSCCC
T ss_pred HHHHHHHHHhccC
Confidence 9999999999875
No 10
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=2.6e-79 Score=691.53 Aligned_cols=319 Identities=33% Similarity=0.513 Sum_probs=255.2
Q ss_pred CCCEEEEEeeCCCCCCC----CCceEeec-CCcEEEEecCCCc-----cCCCCceeecceeeCCCCChhhHHhc-hHHhH
Q 001022 143 KGNIKVFCRTRPLFEDE----GPSVVEFT-DDCTIRVNTGDDT-----ISNPKKDFEFDRVYGPHVGQAELFSD-VQPFV 211 (1186)
Q Consensus 143 kGnIRVf~RVRPl~~~E----~~svV~~~-d~~tI~v~~~~~~-----~~~~~k~FtFD~VF~p~asQeeVFee-V~PLV 211 (1186)
.+||||||||||+++.| ...++.+. ++.+|.+.++... .....+.|+||+||+++++|++||+. +.|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 58999999999998665 23456553 4567777665321 12345899999999999999999998 59999
Q ss_pred hhhcCCccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCCCC
Q 001022 212 QSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNG 291 (1186)
Q Consensus 212 ~svLdGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~ 291 (1186)
+++++|||+||||||||||||||||+|+++++|||||++++||+.+... ...+.|.|+|||+|||||+|+|||.+..
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~~-- 159 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSS-SSNQNFLVIGSYLELYNEEIRDLIKNNT-- 159 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTC-CTTEEEEEEEEEEEEETTEEEETTTTEE--
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhh-ccCCcEEEEEEEEEEeCCEEEEcccCCc--
Confidence 9999999999999999999999999999999999999999999998743 4568899999999999999999998432
Q ss_pred ceEEEec--ccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccCCc--eeeeeeEE
Q 001022 292 LAKIRLQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGE--NLYSKLSL 363 (1186)
Q Consensus 292 ~~~i~~~--~~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~tg~--~~~SkL~L 363 (1186)
...++.+ ....+.+++++.|.++++++.+|..|..+|.++.|. |||||+||+|+|.+.+...+. ...|+|+|
T Consensus 160 ~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~skl~l 239 (350)
T 2vvg_A 160 KLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNL 239 (350)
T ss_dssp EECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----CEEEEEEEEE
T ss_pred CceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCccEEEEEEEE
Confidence 2233333 234567899999999999999999999999998875 999999999999987654443 46799999
Q ss_pred EecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCccccEEEeeCCCCCCH
Q 001022 364 VDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANM 443 (1186)
Q Consensus 364 VDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~ 443 (1186)
||||||||..++++.|.+++|+.+||+||++||+||.+|++++.||||||||||+||||+|||||+|+||+||||+..++
T Consensus 240 VDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~ 319 (350)
T 2vvg_A 240 VDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNY 319 (350)
T ss_dssp EECCCCCC---------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGH
T ss_pred EeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHhhcccccC
Q 001022 444 SETLSSLNFSSRARSTVLSLG 464 (1186)
Q Consensus 444 ~ETLsTLrFAsRAR~I~~~~~ 464 (1186)
+||++||+||+||++|++.+.
T Consensus 320 ~ETl~TL~fA~rak~i~n~~~ 340 (350)
T 2vvg_A 320 DETMSTLRYADRAKQIKNKPR 340 (350)
T ss_dssp HHHHHHHHHHHHHTTCBCCCC
T ss_pred HHHHHHHHHHHHHhhccccce
Confidence 999999999999999987654
No 11
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=3.8e-79 Score=693.56 Aligned_cols=313 Identities=33% Similarity=0.544 Sum_probs=261.7
Q ss_pred cCCCCEEEEEeeCCCCCCC----CCceEeecC---CcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHhHh
Q 001022 141 TAKGNIKVFCRTRPLFEDE----GPSVVEFTD---DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQ 212 (1186)
Q Consensus 141 elkGnIRVf~RVRPl~~~E----~~svV~~~d---~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFeeV-~PLV~ 212 (1186)
..+|||||||||||+++.| ...++.+++ +.++.+ ..+.|+||+||+++++|++||+.+ .|+|+
T Consensus 8 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~---------~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~ 78 (365)
T 2y65_A 8 PAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI---------AGKVYLFDKVFKPNASQEKVYNEAAKSIVT 78 (365)
T ss_dssp CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEE---------TTEEEECSEEECTTCCHHHHHHHHTHHHHH
T ss_pred CCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEE---------CCEEEeCceEecCCCCHHHHHHHhhhhHHH
Confidence 4679999999999998765 234555554 334433 237899999999999999999985 89999
Q ss_pred hhcCCccEEEEeeccCCCCcccccccCC---CCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCC
Q 001022 213 SALDGYNVSIFAYGQTHSGKTHTMEGSS---HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG 289 (1186)
Q Consensus 213 svLdGyNvcIfAYGQTGSGKTyTM~Gs~---~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~ 289 (1186)
++++|||+||||||||||||||||+|+. .++|||||++++||+.+... ...+.|.|+|||+|||||+|+|||++..
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 157 (365)
T 2y65_A 79 DVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAM-EVNLEFHIKVSYYEIYMDKIRDLLDVSK 157 (365)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHC-CSCEEEEEEEEEEEEETTEEEETTCTTC
T ss_pred HHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhc-cCCceEEEEEEEEEEECCeeeecccCCc
Confidence 9999999999999999999999999964 45799999999999988643 3568999999999999999999998765
Q ss_pred CCceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccCCceeeeeeEE
Q 001022 290 NGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSL 363 (1186)
Q Consensus 290 ~~~~~i~~~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~L 363 (1186)
.. ..++.+. ...+.+++++.|.++++++.+|..|..+|.++.|. |||||+||+|+|.+.+...+....|+|+|
T Consensus 158 ~~-l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~l 236 (365)
T 2y65_A 158 VN-LSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYL 236 (365)
T ss_dssp CS-BCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEE
T ss_pred CC-ceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCCCEeEEEEEE
Confidence 43 3344433 23567899999999999999999999999999986 89999999999999888777788899999
Q ss_pred EecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccC-CCcccCCCCccccccccccCCCccccEEEeeCCCCCC
Q 001022 364 VDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAAN 442 (1186)
Q Consensus 364 VDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k-~~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~ 442 (1186)
||||||||+.++++.|.+++|+.+||+||++||+||.+|+++ +.||||||||||+||||+|||||+|+||+||||+..+
T Consensus 237 VDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~ 316 (365)
T 2y65_A 237 VDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFN 316 (365)
T ss_dssp EECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGG
T ss_pred EECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCC
Confidence 999999999999999999999999999999999999999986 5899999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHhhcccccC
Q 001022 443 MSETLSSLNFSSRARSTVLSLG 464 (1186)
Q Consensus 443 ~~ETLsTLrFAsRAR~I~~~~~ 464 (1186)
++||++||+||+||++|++.+.
T Consensus 317 ~~ETl~TL~fA~rak~I~n~~~ 338 (365)
T 2y65_A 317 ESETKSTLDFGRRAKTVKNVVC 338 (365)
T ss_dssp HHHHHHHHHHHHHHTTCEEECC
T ss_pred HHHHHHHHHHHHHHhcccCcce
Confidence 9999999999999999987654
No 12
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.7e-79 Score=697.40 Aligned_cols=324 Identities=27% Similarity=0.459 Sum_probs=249.1
Q ss_pred hhhccCCCCEEEEEeeCCCCCCCC----CceEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhH
Q 001022 137 NDLLTAKGNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFV 211 (1186)
Q Consensus 137 N~l~elkGnIRVf~RVRPl~~~E~----~svV~~~d~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFee-V~PLV 211 (1186)
-.....++||||+|||||+++.|. ..|+...+++++.+..+.. ....+.|+||+||+++++|++||+. +.|+|
T Consensus 14 ~~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~--~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv 91 (388)
T 3bfn_A 14 LYFQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRN--HQETLKYQFDAFYGERSTQQDIYAGSVQPIL 91 (388)
T ss_dssp CCSSSCCCCCEEEEEECCCC-------------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGH
T ss_pred ccccCCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCC--CCCeeEEEcceEecCCCCHhHHHHHHHHHHH
Confidence 445678999999999999998763 2455555666666543321 1234789999999999999999997 69999
Q ss_pred hhhcCCccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccC--cccccccceeEEEEEEecccccccCCCCC
Q 001022 212 QSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSD--TTATARFNFAVTVFELYNEQLRELLPQTG 289 (1186)
Q Consensus 212 ~svLdGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~--~~~~~~y~V~VS~lEIYNE~V~DLL~~~~ 289 (1186)
+++|+|||+||||||||||||||||+|+++++|||||++++||+.+... ....+.|.|+|||+|||||+|+|||++..
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~ 171 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPAS 171 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSS
T ss_pred HHhhcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCC
Confidence 9999999999999999999999999999999999999999999988642 23467899999999999999999998765
Q ss_pred CCceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccC-CceeeeeeE
Q 001022 290 NGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT-GENLYSKLS 362 (1186)
Q Consensus 290 ~~~~~i~~~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~t-g~~~~SkL~ 362 (1186)
.. ..++.+. ...+.+++++.|.++++++.+|..|..+|.++.|. |||||+||+|+|.+.+... .....|+|+
T Consensus 172 ~~-l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~skL~ 250 (388)
T 3bfn_A 172 GD-LVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLY 250 (388)
T ss_dssp CB-CCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTCCEEEEEEE
T ss_pred CC-ceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCCCceeEEEEE
Confidence 43 3344432 34567899999999999999999999999998874 8999999999999876543 345789999
Q ss_pred EEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCccccEEEeeCCCCCC
Q 001022 363 LVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAAN 442 (1186)
Q Consensus 363 LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~ 442 (1186)
|||||||||..++++.|.|++|+.+||+||++||+||.+|+++..||||||||||+||||+|||||+|+||+||||+..+
T Consensus 251 lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~ 330 (388)
T 3bfn_A 251 LIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRF 330 (388)
T ss_dssp EEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGG
T ss_pred EEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHHhhCCCccEEEEEEECCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHhhccccc
Q 001022 443 MSETLSSLNFSSRARSTVLSL 463 (1186)
Q Consensus 443 ~~ETLsTLrFAsRAR~I~~~~ 463 (1186)
++||++||+||+||++|++.+
T Consensus 331 ~~ETlsTLrfA~rak~I~n~p 351 (388)
T 3bfn_A 331 YLDTVSALNFAARSKEVINRP 351 (388)
T ss_dssp HHHHHHHHHHHCSEEEEC---
T ss_pred HHHHHHHHHHHHHHhhCcCcC
Confidence 999999999999999987654
No 13
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=1.2e-78 Score=690.61 Aligned_cols=326 Identities=32% Similarity=0.476 Sum_probs=269.2
Q ss_pred hhhccCCCCEEEEEeeCCCCCCC----CCceEee-cCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHh
Q 001022 137 NDLLTAKGNIKVFCRTRPLFEDE----GPSVVEF-TDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPF 210 (1186)
Q Consensus 137 N~l~elkGnIRVf~RVRPl~~~E----~~svV~~-~d~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFeeV-~PL 210 (1186)
+..++.++||||||||||+++.| ...++.+ ++..+|.+..+........+.|+||+||+++++|++||+.+ .|+
T Consensus 14 ~~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~pl 93 (372)
T 3b6u_A 14 LYFQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPL 93 (372)
T ss_dssp -------CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHH
T ss_pred CccCCCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHH
Confidence 45678899999999999998655 2345554 34567888766544345568999999999999999999985 999
Q ss_pred HhhhcCCccEEEEeeccCCCCcccccccCC---CCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCC
Q 001022 211 VQSALDGYNVSIFAYGQTHSGKTHTMEGSS---HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQ 287 (1186)
Q Consensus 211 V~svLdGyNvcIfAYGQTGSGKTyTM~Gs~---~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~ 287 (1186)
|+++|+|||+||||||||||||||||+|+. .++|||||++++||..+.. ...+.|.|+|||+|||||+|+|||++
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~--~~~~~~~v~vS~~EIYnE~i~DLL~~ 171 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISR--SQNQQYLVRASYLEIYQEEIRDLLSK 171 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHT--CSSCEEEEEEEEEEEETTEEEETTSS
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhh--ccCCceEEEEEEEEEeCCEEEECCCC
Confidence 999999999999999999999999999964 4579999999999999875 45689999999999999999999988
Q ss_pred CCCCceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeecc---CCceee
Q 001022 288 TGNGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI---TGENLY 358 (1186)
Q Consensus 288 ~~~~~~~i~~~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~---tg~~~~ 358 (1186)
.......++.+. ...+.+++++.|.++++++.+|..|..+|.++.|. |||||+||+|+|...+.. ......
T Consensus 172 ~~~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~ 251 (372)
T 3b6u_A 172 DQTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRV 251 (372)
T ss_dssp CTTCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEEE
T ss_pred CCCCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceEE
Confidence 655445555443 34567899999999999999999999999999986 899999999999886542 233567
Q ss_pred eeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCC-CcccCCCCccccccccccCCCccccEEEeeC
Q 001022 359 SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK-DIVPYENSMLTKVLADSLGESSKTLMIVNIC 437 (1186)
Q Consensus 359 SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~-~hVPYRdSKLTrLLqDSLGGNSKTlMIv~IS 437 (1186)
|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++++ .||||||||||+||||+|||||+|+||+|||
T Consensus 252 skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vs 331 (372)
T 3b6u_A 252 GKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVG 331 (372)
T ss_dssp EEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEEC
T ss_pred EEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeC
Confidence 999999999999999999999999999999999999999999998864 6999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhHHHHHHhhcccccC
Q 001022 438 PNAANMSETLSSLNFSSRARSTVLSLG 464 (1186)
Q Consensus 438 Ps~~~~~ETLsTLrFAsRAR~I~~~~~ 464 (1186)
|+..+++||++||+||+||++|++.+.
T Consensus 332 P~~~~~~ETlsTLrfA~rak~I~n~~~ 358 (372)
T 3b6u_A 332 PASYNVEETLTTLRYANRAKNIKNKPR 358 (372)
T ss_dssp CBGGGHHHHHHHHHHHHHHTTCBCCCC
T ss_pred CcccCHHHHHHHHHHHHHHhhccccce
Confidence 999999999999999999999987654
No 14
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=5.3e-79 Score=699.93 Aligned_cols=327 Identities=28% Similarity=0.388 Sum_probs=264.0
Q ss_pred HHHHhhhhhhhccCCCCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCccCC----CCceeecceeeCCCCCh
Q 001022 129 INEKKRLFNDLLTAKGNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTISN----PKKDFEFDRVYGPHVGQ 200 (1186)
Q Consensus 129 ~~eRkkLhN~l~elkGnIRVf~RVRPl~~~E----~~svV~~~d~~tI~v~~~~~~~~~----~~k~FtFD~VF~p~asQ 200 (1186)
...|+..||+..+ ++||+|||||||+++.| ...+|.+++++++.+..+...... ..+.|+||+||+++++|
T Consensus 57 ~~~~~~~~~~~~~-~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ 135 (410)
T 1v8k_A 57 MECSPLTVTDPIE-EHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASN 135 (410)
T ss_dssp HTCCTTTTTCTTS-CCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCH
T ss_pred hccCCCccCCcCC-CCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCCh
Confidence 3447788888777 89999999999998765 245778888888877654322111 24789999999999999
Q ss_pred hhHHhch-HHhHhhhcCCccEEEEeeccCCCCcccccccCC------CCCCcHHHHHHHHHHhhccCcccccccceeEEE
Q 001022 201 AELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSS------HDRGLYARCFEELFDLSNSDTTATARFNFAVTV 273 (1186)
Q Consensus 201 eeVFeeV-~PLV~svLdGyNvcIfAYGQTGSGKTyTM~Gs~------~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~ 273 (1186)
++||+.+ .|+|+++|+|||+||||||||||||||||+|+. .++|||||++++||..+.......+.|.|+|||
T Consensus 136 ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~ 215 (410)
T 1v8k_A 136 EVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTF 215 (410)
T ss_dssp HHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEE
T ss_pred hhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEE
Confidence 9999985 999999999999999999999999999999963 468999999999999887544456889999999
Q ss_pred EEEecccccccCCCCCCCceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEE
Q 001022 274 FELYNEQLRELLPQTGNGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIY 347 (1186)
Q Consensus 274 lEIYNE~V~DLL~~~~~~~~~i~~~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~ 347 (1186)
+|||||+|+|||++.. ...++.+. ...+.+++++.|.++++++.+|..|..+|.++.|. |||||+||+|+|.
T Consensus 216 lEIYnE~i~DLL~~~~--~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~ 293 (410)
T 1v8k_A 216 FEIYNGKVFDLLNKKA--KLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLR 293 (410)
T ss_dssp EEEETTEEEETTTTTE--EEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEE
T ss_pred EEeeCCEEEECCCCCC--CceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEE
Confidence 9999999999998743 23444433 34577899999999999999999999999998874 9999999999998
Q ss_pred EeeccCCceeeeeeEEEecCCCccccccC-CccchhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccc-cC
Q 001022 348 YNNLITGENLYSKLSLVDLAGSEGLIAED-DSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADS-LG 425 (1186)
Q Consensus 348 ~~n~~tg~~~~SkL~LVDLAGSER~~ks~-a~G~RLkEa~~INkSLsALg~VIsALa~k~~hVPYRdSKLTrLLqDS-LG 425 (1186)
+.. ...|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.+|+.++.||||||||||+||||+ ||
T Consensus 294 ~~~-----~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hIPYRdSKLTrLLqdsllG 368 (410)
T 1v8k_A 294 TKG-----RLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIG 368 (410)
T ss_dssp SSS-----SEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHHTTHHHHS
T ss_pred eCC-----cceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCCCCCCcccchhHHHHhhcccC
Confidence 642 467999999999999998876 46788999999999999999999999999999999999999999999 69
Q ss_pred CCccccEEEeeCCCCCCHHHHHHHhHHHHHHhhccccc
Q 001022 426 ESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSL 463 (1186)
Q Consensus 426 GNSKTlMIv~ISPs~~~~~ETLsTLrFAsRAR~I~~~~ 463 (1186)
|||+|+||+||||+..+++||++||+||+||++|.-++
T Consensus 369 gnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~ 406 (410)
T 1v8k_A 369 ENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHH 406 (410)
T ss_dssp SSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC---
T ss_pred CCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCC
Confidence 99999999999999999999999999999999986543
No 15
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-78 Score=687.49 Aligned_cols=316 Identities=28% Similarity=0.379 Sum_probs=250.7
Q ss_pred cCCCCEEEEEeeCCCCCCCCCceEeecCCcEEEEecCCCcc------CCCCceeecceeeCCCCChhhHHhch-HHhHhh
Q 001022 141 TAKGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTI------SNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQS 213 (1186)
Q Consensus 141 elkGnIRVf~RVRPl~~~E~~svV~~~d~~tI~v~~~~~~~------~~~~k~FtFD~VF~p~asQeeVFeeV-~PLV~s 213 (1186)
..+|||||||||||+.+.|...+...++..+|.+..+.... ....+.|+||+||+ +++|++||+.+ .|+|++
T Consensus 21 ~~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~plv~~ 99 (359)
T 3nwn_A 21 GTRKKVHAFVRVKPTDDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDVVSQ 99 (359)
T ss_dssp ---CCEEEEEEECCCSSCCTTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHHHHH
T ss_pred CCCCCEEEEEEcCCCCcccccceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHHHHHH
Confidence 56899999999999987776655555667788877654321 22346899999997 58999999986 899999
Q ss_pred hcCCccEEEEeeccCCCCcccccccCCC---CCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCCC
Q 001022 214 ALDGYNVSIFAYGQTHSGKTHTMEGSSH---DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN 290 (1186)
Q Consensus 214 vLdGyNvcIfAYGQTGSGKTyTM~Gs~~---~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~ 290 (1186)
+|+|||+||||||||||||||||+|+.. ++|||||++++||+.+.. .+.+.|.|+|||+|||||+|+|||++...
T Consensus 100 ~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~--~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 177 (359)
T 3nwn_A 100 ALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEE--RPTHAITVRVSYLEIYNESLFDLLSTLPY 177 (359)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHT--CTTSCEEEEEEEEEEETTEEEETTSSSTT
T ss_pred HhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhc--CCCCcEEEEEEEEEEeccccccccccccc
Confidence 9999999999999999999999999754 489999999999998864 34678999999999999999999986432
Q ss_pred C-----ceEEEec-ccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCC----CCceeEEEEEEEEEEeecc--CCceee
Q 001022 291 G-----LAKIRLQ-SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVS----KFNVSHLIIMIHIYYNNLI--TGENLY 358 (1186)
Q Consensus 291 ~-----~~~i~~~-~~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T----~SSRSH~IftI~V~~~n~~--tg~~~~ 358 (1186)
. ...++.+ ....+.+++++.|.+++++..++..|..+|.++.| .|||||+||+|+|...... .+....
T Consensus 178 ~~~~~~~~~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~~~ 257 (359)
T 3nwn_A 178 VGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYIT 257 (359)
T ss_dssp SCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------CCEE
T ss_pred cccccccceEEecCCceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeecccccCccccc
Confidence 1 2223332 23456789999999999999999999999988776 4999999999999876543 234567
Q ss_pred eeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhcc-CCCcccCCCCccccccccccCCCccccEEEeeC
Q 001022 359 SKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS-RKDIVPYENSMLTKVLADSLGESSKTLMIVNIC 437 (1186)
Q Consensus 359 SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~-k~~hVPYRdSKLTrLLqDSLGGNSKTlMIv~IS 437 (1186)
|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|++ ++.||||||||||+||||+|||||+|+||+|||
T Consensus 258 skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~mI~~is 337 (359)
T 3nwn_A 258 SKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIY 337 (359)
T ss_dssp EEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEEEC
T ss_pred ccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEEEEEeC
Confidence 9999999999999999999999999999999999999999999987 457999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhHHHHHHhhc
Q 001022 438 PNAANMSETLSSLNFSSRARST 459 (1186)
Q Consensus 438 Ps~~~~~ETLsTLrFAsRAR~I 459 (1186)
|+..+++||++||+||+|||+|
T Consensus 338 P~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 338 GEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp CSGGGHHHHHHHHHHHTTGGGC
T ss_pred CchhhHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999975
No 16
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=1.9e-78 Score=688.29 Aligned_cols=319 Identities=30% Similarity=0.495 Sum_probs=264.2
Q ss_pred CCCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCccCCCCceeecceeeCCC--------CChhhHHhch-HH
Q 001022 143 KGNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPH--------VGQAELFSDV-QP 209 (1186)
Q Consensus 143 kGnIRVf~RVRPl~~~E----~~svV~~~d~~tI~v~~~~~~~~~~~k~FtFD~VF~p~--------asQeeVFeeV-~P 209 (1186)
.+||||||||||+++.| ...++.+.++.. .+..+.. .....+.|+||+||+++ ++|++||+.+ .|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~-~i~~~~~-~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~p 80 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTT-TIVNPKQ-PKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEE 80 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETTEE-EECCTTC-TTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCCcE-EEeccCC-CCCCceEEecceEeecCccccccccCcHHHHHHHHHHH
Confidence 47999999999998655 234566655544 3433322 12345899999999987 8999999986 89
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccccCC--CCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCC
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTMEGSS--HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQ 287 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM~Gs~--~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~ 287 (1186)
+|+++++|||+||||||||||||||||+|+. .++|||||++++||+.+.......+.|.|+|||+|||||+|+|||++
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~ 160 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP 160 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCT
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcccc
Confidence 9999999999999999999999999999984 57899999999999999876666789999999999999999999998
Q ss_pred CCCCceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccCC----cee
Q 001022 288 TGNGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITG----ENL 357 (1186)
Q Consensus 288 ~~~~~~~i~~~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~tg----~~~ 357 (1186)
.......++.+. ...+.+++++.|.+++|++.+|..|.++|.++.|. |||||+||+|+|.+...... ...
T Consensus 161 ~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~ 240 (366)
T 2zfi_A 161 KNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEK 240 (366)
T ss_dssp TTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEE
T ss_pred ccCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCcccee
Confidence 765555565543 33566899999999999999999999999998875 89999999999988654322 235
Q ss_pred eeeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhcc------------CCCcccCCCCccccccccccC
Q 001022 358 YSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS------------RKDIVPYENSMLTKVLADSLG 425 (1186)
Q Consensus 358 ~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~------------k~~hVPYRdSKLTrLLqDSLG 425 (1186)
.|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|++ +..||||||||||+||||+||
T Consensus 241 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLg 320 (366)
T 2zfi_A 241 VSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLG 320 (366)
T ss_dssp EEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSS
T ss_pred EeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhC
Confidence 79999999999999999999999999999999999999999999986 357999999999999999999
Q ss_pred CCccccEEEeeCCCCCCHHHHHHHhHHHHHHhhccccc
Q 001022 426 ESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSL 463 (1186)
Q Consensus 426 GNSKTlMIv~ISPs~~~~~ETLsTLrFAsRAR~I~~~~ 463 (1186)
|||+|+||+||||+..+++||++||+||+||++|++.+
T Consensus 321 Gnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~ 358 (366)
T 2zfi_A 321 GNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTV 358 (366)
T ss_dssp TTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC------
T ss_pred CCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCC
Confidence 99999999999999999999999999999999987654
No 17
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=3.3e-78 Score=683.90 Aligned_cols=317 Identities=35% Similarity=0.514 Sum_probs=282.1
Q ss_pred cCCCCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhHhhhc
Q 001022 141 TAKGNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSAL 215 (1186)
Q Consensus 141 elkGnIRVf~RVRPl~~~E----~~svV~~~d~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFee-V~PLV~svL 215 (1186)
..+|||||+|||||+.+.| ...+|.+.++.++.+.... ..+.|+||+||+++++|++||+. +.|+|++++
T Consensus 3 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~-----~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l 77 (355)
T 1goj_A 3 SSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKE-----AQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDIL 77 (355)
T ss_dssp CSSCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECSTT-----CCEEEECSEEECTTCCHHHHHHHHTHHHHHHHT
T ss_pred CCCCCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEccCC-----CccEEeeCeEECCCCccHHHHHHHHHHHHHHHh
Confidence 3479999999999998644 3467788877777665332 35899999999999999999996 699999999
Q ss_pred CCccEEEEeeccCCCCcccccccC----CCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCCCC
Q 001022 216 DGYNVSIFAYGQTHSGKTHTMEGS----SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGNG 291 (1186)
Q Consensus 216 dGyNvcIfAYGQTGSGKTyTM~Gs----~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~~ 291 (1186)
+|||+||||||||||||||||+|+ +.++|||||++++||+.+... ...+.|.|+|||+|||||+|+|||++....
T Consensus 78 ~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 156 (355)
T 1goj_A 78 NGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSS-AANIEYTVRVSYMEIYMERIRDLLAPQNDN 156 (355)
T ss_dssp TTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTS-CTTEEEEEEEEEEEEETTEEEETTSTTCCS
T ss_pred CCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhc-ccCceEEEEEEEEEEECCEEEEcccCccCC
Confidence 999999999999999999999996 466899999999999988643 356789999999999999999999886544
Q ss_pred ceEEEec--ccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCC----CCceeEEEEEEEEEEeeccCCceeeeeeEEEe
Q 001022 292 LAKIRLQ--SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVS----KFNVSHLIIMIHIYYNNLITGENLYSKLSLVD 365 (1186)
Q Consensus 292 ~~~i~~~--~~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T----~SSRSH~IftI~V~~~n~~tg~~~~SkL~LVD 365 (1186)
. .++.+ ....+.+++++.|.++++++.+|..|..+|.++.| .|||||+||+|+|.+.+...+....|+|+|||
T Consensus 157 l-~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVD 235 (355)
T 1goj_A 157 L-PVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVD 235 (355)
T ss_dssp C-CEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred c-eeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCCCceeeeEEEEEE
Confidence 3 33333 23456789999999999999999999999988766 49999999999999988877778899999999
Q ss_pred cCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccC-CCcccCCCCccccccccccCCCccccEEEeeCCCCCCHH
Q 001022 366 LAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMS 444 (1186)
Q Consensus 366 LAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k-~~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~ 444 (1186)
||||||..++++.|.+++|+.+||+||++||+||.+|+++ ..||||||||||+||||+|||||+|+||+||||+..+++
T Consensus 236 LAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ 315 (355)
T 1goj_A 236 LAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDA 315 (355)
T ss_dssp CCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHH
T ss_pred CCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHH
Confidence 9999999999999999999999999999999999999985 589999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHhhcccccC
Q 001022 445 ETLSSLNFSSRARSTVLSLG 464 (1186)
Q Consensus 445 ETLsTLrFAsRAR~I~~~~~ 464 (1186)
||++||+||+||++|++.+.
T Consensus 316 ETl~TL~fA~rak~I~n~~~ 335 (355)
T 1goj_A 316 ETLSTLRFGMRAKSIKNKAK 335 (355)
T ss_dssp HHHHHHHHHHHHHTCBCCCC
T ss_pred HHHHHHHHHHHHhhccCCce
Confidence 99999999999999987654
No 18
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=1.3e-78 Score=690.96 Aligned_cols=320 Identities=33% Similarity=0.509 Sum_probs=262.7
Q ss_pred ccCCCCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhHhhh
Q 001022 140 LTAKGNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSA 214 (1186)
Q Consensus 140 ~elkGnIRVf~RVRPl~~~E----~~svV~~~d~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFee-V~PLV~sv 214 (1186)
.+.++||||||||||+++.| ...++.+.++..+.+..... ....+.|+||+||+++++|++||+. +.|+|+++
T Consensus 19 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~ 96 (373)
T 2wbe_C 19 KKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLD--SKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEV 96 (373)
T ss_dssp CCCCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSS--STTCEEEECSEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCC--CCCceEEeccEEeccccchhHHHHHHHHHHHHHH
Confidence 35789999999999998765 34577777777777654322 2345899999999999999999998 59999999
Q ss_pred cCCccEEEEeeccCCCCcccccccCCC-----------CCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccc
Q 001022 215 LDGYNVSIFAYGQTHSGKTHTMEGSSH-----------DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRE 283 (1186)
Q Consensus 215 LdGyNvcIfAYGQTGSGKTyTM~Gs~~-----------~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~D 283 (1186)
|+|||+||||||||||||||||+|++. ++|||||++++||+.+.. ..+.|.|+|||+|||||+|+|
T Consensus 97 l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~---~~~~~~v~vS~~EIYnE~i~D 173 (373)
T 2wbe_C 97 LNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRM---MEVEYTMRISYLELYNEELCD 173 (373)
T ss_dssp HHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHH---CCSCEEEEEEEEEEETTEEEE
T ss_pred hCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHh---cCceEEEEEEEEEEeCCeEEE
Confidence 999999999999999999999999754 689999999999998864 246899999999999999999
Q ss_pred cCCCCCCCceEEEecc----cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeecc-CC
Q 001022 284 LLPQTGNGLAKIRLQS----LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI-TG 354 (1186)
Q Consensus 284 LL~~~~~~~~~i~~~~----~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~-tg 354 (1186)
||.+.......+..+. ...+.+++++.|.+++|++.+|..|..+|.++.|. |||||+||+|+|...... .+
T Consensus 174 LL~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~ 253 (373)
T 2wbe_C 174 LLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEG 253 (373)
T ss_dssp SSCTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTTT
T ss_pred CCCCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCCC
Confidence 9987655444444332 23566899999999999999999999999999985 899999999999876432 22
Q ss_pred --ceeeeeeEEEecCCCccccccCCc-cchhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCcccc
Q 001022 355 --ENLYSKLSLVDLAGSEGLIAEDDS-GERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTL 431 (1186)
Q Consensus 355 --~~~~SkL~LVDLAGSER~~ks~a~-G~RLkEa~~INkSLsALg~VIsALa~k~~hVPYRdSKLTrLLqDSLGGNSKTl 431 (1186)
....|+|+|||||||||+.++++. |.|++|+.+||+||++||+||.+|+++..||||||||||+||||+|||||+|+
T Consensus 254 ~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~ 333 (373)
T 2wbe_C 254 EDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQESLGGRTKTS 333 (373)
T ss_dssp CCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCSSCCCGGGCHHHHHTHHHHHSSSEEE
T ss_pred CcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCCCcCccccchHHHHHHHHhCCCceEE
Confidence 235799999999999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCHHHHHHHhHHHHHHhhcccccC
Q 001022 432 MIVNICPNAANMSETLSSLNFSSRARSTVLSLG 464 (1186)
Q Consensus 432 MIv~ISPs~~~~~ETLsTLrFAsRAR~I~~~~~ 464 (1186)
||+||||+..+++||++||+||+||++|++.+.
T Consensus 334 mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~ 366 (373)
T 2wbe_C 334 IIATISPGHKDIEETLSTLEYAHRAKNIQNKPE 366 (373)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHHHTCEECCC
T ss_pred EEEEeCCCcccHHHHHHHHHHHHHHhhccccce
Confidence 999999999999999999999999999987654
No 19
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=8.6e-79 Score=694.19 Aligned_cols=325 Identities=28% Similarity=0.404 Sum_probs=262.1
Q ss_pred HHHHhhhhhhhccCCCCEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCccCC----CCceeecceeeCCCCCh
Q 001022 129 INEKKRLFNDLLTAKGNIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTISN----PKKDFEFDRVYGPHVGQ 200 (1186)
Q Consensus 129 ~~eRkkLhN~l~elkGnIRVf~RVRPl~~~E----~~svV~~~d~~tI~v~~~~~~~~~----~~k~FtFD~VF~p~asQ 200 (1186)
...|+.+||+..+ ++||||||||||+++.| ...+|.+++++++.+..+...... ..+.|+||+||+++++|
T Consensus 37 ~~~~~~~~~~~~~-~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ 115 (387)
T 2heh_A 37 LECHPLTMTDPIE-EHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASN 115 (387)
T ss_dssp CCCBCCCTTSCCC-CCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCH
T ss_pred hccCCCccCCCCC-CCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCc
Confidence 3457888998877 99999999999998765 245778888888777654322111 24689999999999999
Q ss_pred hhHHhch-HHhHhhhcCCccEEEEeeccCCCCcccccccC------CCCCCcHHHHHHHHHHhhccCcccccccceeEEE
Q 001022 201 AELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGS------SHDRGLYARCFEELFDLSNSDTTATARFNFAVTV 273 (1186)
Q Consensus 201 eeVFeeV-~PLV~svLdGyNvcIfAYGQTGSGKTyTM~Gs------~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~ 273 (1186)
++||+.+ .|+|+++|+|||+||||||||||||||||+|+ ..++|||||++++||..+.......+.|.|+|||
T Consensus 116 ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~ 195 (387)
T 2heh_A 116 EVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTF 195 (387)
T ss_dssp HHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEE
T ss_pred eeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEE
Confidence 9999985 99999999999999999999999999999996 3568999999999999887544456789999999
Q ss_pred EEEecccccccCCCCCCCceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEE
Q 001022 274 FELYNEQLRELLPQTGNGLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIY 347 (1186)
Q Consensus 274 lEIYNE~V~DLL~~~~~~~~~i~~~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~ 347 (1186)
+|||||+|+|||++.. ...++.+. ...+.+++++.|.+++|++.+|..|..+|.++.|. |||||+||+|+|.
T Consensus 196 ~EIYnE~v~DLL~~~~--~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~ 273 (387)
T 2heh_A 196 FEIYNGKLFDLLNKKA--KLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILR 273 (387)
T ss_dssp EEEETTEEEETTTTTE--ECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEE
T ss_pred EEecCCeEEECCCCCc--cceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEE
Confidence 9999999999998753 23444433 34577899999999999999999999999998874 9999999999998
Q ss_pred EeeccCCceeeeeeEEEecCCCccccccC-CccchhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccc-cC
Q 001022 348 YNNLITGENLYSKLSLVDLAGSEGLIAED-DSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADS-LG 425 (1186)
Q Consensus 348 ~~n~~tg~~~~SkL~LVDLAGSER~~ks~-a~G~RLkEa~~INkSLsALg~VIsALa~k~~hVPYRdSKLTrLLqDS-LG 425 (1186)
+. ....|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.+|+.++.||||||||||+||||+ ||
T Consensus 274 ~~-----~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPYRdSKLTrlLqdsllG 348 (387)
T 2heh_A 274 AK-----GRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIG 348 (387)
T ss_dssp SS-----SSEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGGSS
T ss_pred EC-----CeeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCCCCCCccccHHHHHHhhhccC
Confidence 64 2467999999999999998876 46788999999999999999999999999999999999999999999 69
Q ss_pred CCccccEEEeeCCCCCCHHHHHHHhHHHHHHhhccc
Q 001022 426 ESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVL 461 (1186)
Q Consensus 426 GNSKTlMIv~ISPs~~~~~ETLsTLrFAsRAR~I~~ 461 (1186)
|||+|+||+||||+..+++||++||+||+||++|..
T Consensus 349 gnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~ 384 (387)
T 2heh_A 349 ENSRTCMIATISPGISSCEYTLNTLRYADRVKELSP 384 (387)
T ss_dssp TTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC---
T ss_pred CCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcC
Confidence 999999999999999999999999999999999864
No 20
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=7.8e-79 Score=689.98 Aligned_cols=320 Identities=32% Similarity=0.476 Sum_probs=257.9
Q ss_pred cCCCCEEEEEeeCCCCCCC----CCceEeec-CCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHhHhhh
Q 001022 141 TAKGNIKVFCRTRPLFEDE----GPSVVEFT-DDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSA 214 (1186)
Q Consensus 141 elkGnIRVf~RVRPl~~~E----~~svV~~~-d~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFeeV-~PLV~sv 214 (1186)
+.++||||||||||+++.| ...++.+. +...|.+..+........+.|+||+||+++++|++||+.+ .|+|+++
T Consensus 5 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 84 (359)
T 1x88_A 5 EKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEV 84 (359)
T ss_dssp ----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHH
Confidence 4579999999999998654 23455553 3456666543211122357899999999999999999985 8999999
Q ss_pred cCCccEEEEeeccCCCCcccccccCCC-----------CCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccc
Q 001022 215 LDGYNVSIFAYGQTHSGKTHTMEGSSH-----------DRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRE 283 (1186)
Q Consensus 215 LdGyNvcIfAYGQTGSGKTyTM~Gs~~-----------~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~D 283 (1186)
|+|||+||||||||||||||||+|++. .+|||||++++||+.+.. ..+.|.|+|||+|||||+|+|
T Consensus 85 l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~---~~~~~~v~vS~~EIYnE~i~D 161 (359)
T 1x88_A 85 IMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD---NGTEFSVKVSLLEIYNEELFD 161 (359)
T ss_dssp HTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS---SSEEEEEEEEEEEEETTEEEE
T ss_pred hCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc---cCceEEEEEEEEEEeCceeee
Confidence 999999999999999999999999754 369999999999998864 468899999999999999999
Q ss_pred cCCCCCCC--ceEEEecc----cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeecc-
Q 001022 284 LLPQTGNG--LAKIRLQS----LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI- 352 (1186)
Q Consensus 284 LL~~~~~~--~~~i~~~~----~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~- 352 (1186)
||++.... ...++.+. ...+.+++++.|.++++++.+|..|..+|.++.|. |||||+||+|+|...+..
T Consensus 162 LL~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~ 241 (359)
T 1x88_A 162 LLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 241 (359)
T ss_dssp TTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECT
T ss_pred hhcccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccC
Confidence 99886542 23444332 23567899999999999999999999999887764 899999999999876432
Q ss_pred CCc--eeeeeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCccc
Q 001022 353 TGE--NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKT 430 (1186)
Q Consensus 353 tg~--~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~~hVPYRdSKLTrLLqDSLGGNSKT 430 (1186)
.+. ...|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+..||||||||||+||||+|||||+|
T Consensus 242 ~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt 321 (359)
T 1x88_A 242 DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRT 321 (359)
T ss_dssp TSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGSSSSSEE
T ss_pred CCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHhCCCCeE
Confidence 222 357999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeeCCCCCCHHHHHHHhHHHHHHhhccccc
Q 001022 431 LMIVNICPNAANMSETLSSLNFSSRARSTVLSL 463 (1186)
Q Consensus 431 lMIv~ISPs~~~~~ETLsTLrFAsRAR~I~~~~ 463 (1186)
+||+||||+..+++||++||+||+||++|++.+
T Consensus 322 ~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p 354 (359)
T 1x88_A 322 SIIATISPASLNLEETLSTLEYAHRAKNILNKP 354 (359)
T ss_dssp EEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCC
T ss_pred EEEEEECCCcccHHHHHHHHHHHHHHhhccCcc
Confidence 999999999999999999999999999998654
No 21
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=3e-77 Score=674.64 Aligned_cols=311 Identities=32% Similarity=0.447 Sum_probs=263.7
Q ss_pred CCCEEEEEeeCCCCCCCCC----ceEeec-CCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhch-HHhHhhhcC
Q 001022 143 KGNIKVFCRTRPLFEDEGP----SVVEFT-DDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSDV-QPFVQSALD 216 (1186)
Q Consensus 143 kGnIRVf~RVRPl~~~E~~----svV~~~-d~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFeeV-~PLV~svLd 216 (1186)
.|+|+|||||||+++.|.. .++.+. ++..|... ...+.|+||+||+++++|++||+.+ .|+|+++++
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~-------~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~ 75 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQV-------DGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQ 75 (349)
T ss_dssp CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEET-------TSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHT
T ss_pred CCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEEC-------CCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence 6999999999999987742 223332 33333321 1247899999999999999999986 899999999
Q ss_pred CccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCCC-CceEE
Q 001022 217 GYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTGN-GLAKI 295 (1186)
Q Consensus 217 GyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~~-~~~~i 295 (1186)
|||+||||||||||||||||+|+++++|||||++++||+.+... +...|.|+|||+|||||+|+|||++... ....+
T Consensus 76 G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~--~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i 153 (349)
T 1t5c_A 76 GYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKF--PDREFLLRVSYMEIYNETITDLLCGTQKMKPLII 153 (349)
T ss_dssp TCCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGC--TTEEEEEEEEEEEEETTEEEESSSSSCTTCCEEE
T ss_pred CCccceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhC--cCCcEEEEEEEEEEeCCEEEEccCCCCCCCCceE
Confidence 99999999999999999999999999999999999999998753 4678999999999999999999987643 33455
Q ss_pred Eeccc--ccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccC-----CceeeeeeEEE
Q 001022 296 RLQSL--ESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLIT-----GENLYSKLSLV 364 (1186)
Q Consensus 296 ~~~~~--~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~t-----g~~~~SkL~LV 364 (1186)
+.+.. ..+.+++++.|.++++++.+|..|.++|.++.|. |||||+||+|+|.+.+... +....|+|+||
T Consensus 154 ~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lV 233 (349)
T 1t5c_A 154 REDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLV 233 (349)
T ss_dssp EETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEE
T ss_pred EECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEE
Confidence 55432 3566899999999999999999999999998875 8999999999998876432 34567999999
Q ss_pred ecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCC--CcccCCCCccccccccccCCCccccEEEeeCCCCCC
Q 001022 365 DLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK--DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAAN 442 (1186)
Q Consensus 365 DLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~--~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~ 442 (1186)
|||||||+.++++.|.|++|+.+||+||++||+||.+|+.++ .||||||||||+||||+|||||+|+||+||||. +
T Consensus 234 DLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~ 311 (349)
T 1t5c_A 234 DLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--S 311 (349)
T ss_dssp ECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--C
T ss_pred ECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--C
Confidence 999999999999999999999999999999999999999764 699999999999999999999999999999996 6
Q ss_pred HHHHHHHhHHHHHHhhcccccC
Q 001022 443 MSETLSSLNFSSRARSTVLSLG 464 (1186)
Q Consensus 443 ~~ETLsTLrFAsRAR~I~~~~~ 464 (1186)
++||++||+||+||++|++.+.
T Consensus 312 ~~ETlsTL~fA~rak~I~n~~~ 333 (349)
T 1t5c_A 312 FDETLTALQFASTAKYMKNTPY 333 (349)
T ss_dssp SHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHHHhhcccCce
Confidence 9999999999999999987654
No 22
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=1.3e-77 Score=679.38 Aligned_cols=319 Identities=28% Similarity=0.388 Sum_probs=249.3
Q ss_pred hhhccCCCCEEEEEeeCCCCCCCCCceEee-cCCcEEEEecCCCcc------CCCCceeecceeeCCCCChhhHHhch-H
Q 001022 137 NDLLTAKGNIKVFCRTRPLFEDEGPSVVEF-TDDCTIRVNTGDDTI------SNPKKDFEFDRVYGPHVGQAELFSDV-Q 208 (1186)
Q Consensus 137 N~l~elkGnIRVf~RVRPl~~~E~~svV~~-~d~~tI~v~~~~~~~------~~~~k~FtFD~VF~p~asQeeVFeeV-~ 208 (1186)
-.-.+.+|||||||||||+.+.+.. ++.+ +++.++.+..+.... ....+.|+||+||+ +++|++||+.+ .
T Consensus 16 ~~~~~~~g~IrV~vRvRP~~~~~~~-~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~~ 93 (358)
T 2nr8_A 16 PRGSGTRKKVHAFVRVKPTDDFAHE-MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAK 93 (358)
T ss_dssp -------CCEEEEEEECCCSSCCTT-TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTH
T ss_pred cCCCCCCCCeEEEEEcCCCCCCccc-eeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHHHH
Confidence 3456789999999999999765543 3444 566777776654321 12346899999995 88999999986 8
Q ss_pred HhHhhhcCCccEEEEeeccCCCCcccccccCCCC---CCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccC
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHD---RGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL 285 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM~Gs~~~---~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL 285 (1186)
|+|+++++|||+||||||||||||||||+|++++ +|||||++++||+.++.. ..+.|.|+|||+|||||+|+|||
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~--~~~~~~v~vS~~EIYnE~i~DLL 171 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEER--PTHAITVRVSYLEIYNESLFDLL 171 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTC--TTSCEEEEEEEEEEETTEEEETT
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhc--CCceEEEEEEEEEEeCCeeeECc
Confidence 9999999999999999999999999999998764 899999999999998753 45789999999999999999999
Q ss_pred CCCCC-----CceEEEec-ccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeecc--C
Q 001022 286 PQTGN-----GLAKIRLQ-SLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI--T 353 (1186)
Q Consensus 286 ~~~~~-----~~~~i~~~-~~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~--t 353 (1186)
++.+. ....++.+ ....+.++++..|.+.++++.+|..|.++|.++.|. |||||+||+|+|.+.+.. .
T Consensus 172 ~~~~~~~~~~~~l~i~e~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~ 251 (358)
T 2nr8_A 172 STLPYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSE 251 (358)
T ss_dssp SSSTTSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC------
T ss_pred CCccccCccCCceEEEECCCceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccCCC
Confidence 87432 22233333 334567899999999999999999999999887763 999999999999876532 2
Q ss_pred CceeeeeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccC-CCcccCCCCccccccccccCCCccccE
Q 001022 354 GENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLM 432 (1186)
Q Consensus 354 g~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k-~~hVPYRdSKLTrLLqDSLGGNSKTlM 432 (1186)
+....|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+++ +.||||||||||+||||+|||||+|+|
T Consensus 252 ~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGnskt~m 331 (358)
T 2nr8_A 252 EKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVL 331 (358)
T ss_dssp -CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEE
T ss_pred CCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCCeEEE
Confidence 3346799999999999999999999999999999999999999999999874 579999999999999999999999999
Q ss_pred EEeeCCCCCCHHHHHHHhHHHHHHhhc
Q 001022 433 IVNICPNAANMSETLSSLNFSSRARST 459 (1186)
Q Consensus 433 Iv~ISPs~~~~~ETLsTLrFAsRAR~I 459 (1186)
|+||||+..+++||++||+||+||++|
T Consensus 332 Ia~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 332 VTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp EEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999975
No 23
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=3.8e-77 Score=691.57 Aligned_cols=325 Identities=31% Similarity=0.456 Sum_probs=258.2
Q ss_pred hhccCCCCEEEEEeeCCCCCCC----CCceEeecCC-cEEEEecCCCc-----------cCCCCceeecceeeCCC----
Q 001022 138 DLLTAKGNIKVFCRTRPLFEDE----GPSVVEFTDD-CTIRVNTGDDT-----------ISNPKKDFEFDRVYGPH---- 197 (1186)
Q Consensus 138 ~l~elkGnIRVf~RVRPl~~~E----~~svV~~~d~-~tI~v~~~~~~-----------~~~~~k~FtFD~VF~p~---- 197 (1186)
...++++||||||||||+++.| ..+++.+.+. ..+.+..+... .....+.|+||+||+++
T Consensus 32 ~~~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~ 111 (443)
T 2owm_A 32 VSKDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTED 111 (443)
T ss_dssp --CCCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTS
T ss_pred ccCCCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCC
Confidence 4578999999999999998655 2345555432 34444333211 01235899999999864
Q ss_pred ---CChhhHHhch-HHhHhhhcCCccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccC--cccccccceeE
Q 001022 198 ---VGQAELFSDV-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSD--TTATARFNFAV 271 (1186)
Q Consensus 198 ---asQeeVFeeV-~PLV~svLdGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~--~~~~~~y~V~V 271 (1186)
++|++||+.+ .|+|+++|+|||+||||||||||||||||+|+++++|||||++++||+.+... ..+.+.|.|+|
T Consensus 112 ~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~v 191 (443)
T 2owm_A 112 EHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKV 191 (443)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEE
T ss_pred ccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEE
Confidence 8999999986 89999999999999999999999999999999999999999999999988754 23578999999
Q ss_pred EEEEEecccccccCCCCCC----CceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEE
Q 001022 272 TVFELYNEQLRELLPQTGN----GLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLI 341 (1186)
Q Consensus 272 S~lEIYNE~V~DLL~~~~~----~~~~i~~~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~I 341 (1186)
||+|||||+|+|||.+... ....++.+. ...+.+++++.|.+++|++.+|..|..+|.++.|. |||||+|
T Consensus 192 S~lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~I 271 (443)
T 2owm_A 192 SYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAV 271 (443)
T ss_dssp EEEEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEE
T ss_pred EEEEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEE
Confidence 9999999999999987322 234455443 34577999999999999999999999999998875 8999999
Q ss_pred EEEEEEEeecc----CCceeeeeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCC-----------
Q 001022 342 IMIHIYYNNLI----TGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRK----------- 406 (1186)
Q Consensus 342 ftI~V~~~n~~----tg~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~----------- 406 (1186)
|+|+|.+.... ......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|++++
T Consensus 272 fti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~ 351 (443)
T 2owm_A 272 FTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVK 351 (443)
T ss_dssp EEEEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC-------------
T ss_pred EEEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccccccc
Confidence 99999875431 223467999999999999999999999999999999999999999999998743
Q ss_pred -----------CcccCCCCccccccccccCCCccccEEEeeCCCCCCHHHHHHHhHHHHHHhhcccccC
Q 001022 407 -----------DIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLG 464 (1186)
Q Consensus 407 -----------~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRAR~I~~~~~ 464 (1186)
.||||||||||+||||+|||||+|+||+||||+ +++||++||+||+||++|++.+.
T Consensus 352 ~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~ 418 (443)
T 2owm_A 352 SGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAV 418 (443)
T ss_dssp ------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCC
T ss_pred cccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccce
Confidence 389999999999999999999999999999996 69999999999999999987653
No 24
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=2.8e-77 Score=676.17 Aligned_cols=314 Identities=34% Similarity=0.503 Sum_probs=252.8
Q ss_pred CCEEEEEeeCCCCCCCC----CceEeecCCcEEEEecCCC-----ccCCCCceeecceee--------CCCCChhhHHhc
Q 001022 144 GNIKVFCRTRPLFEDEG----PSVVEFTDDCTIRVNTGDD-----TISNPKKDFEFDRVY--------GPHVGQAELFSD 206 (1186)
Q Consensus 144 GnIRVf~RVRPl~~~E~----~svV~~~d~~tI~v~~~~~-----~~~~~~k~FtFD~VF--------~p~asQeeVFee 206 (1186)
.||+|+|||||+++.|. ..++.+++ ..+.+.++.. ......+.|+||+|| ++.++|++||+.
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~-~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~ 79 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDA-NKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKC 79 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEET-TEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeCC-CeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHH
Confidence 38999999999987662 34455544 4555554321 122346899999999 456789999998
Q ss_pred h-HHhHhhhcCCccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccC
Q 001022 207 V-QPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELL 285 (1186)
Q Consensus 207 V-~PLV~svLdGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL 285 (1186)
+ .|+|+++|+|||+||||||||||||||||+|+++++|||||++++||+.+.......+.|.|+|||+|||||+|+|||
T Consensus 80 ~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL 159 (354)
T 3gbj_A 80 LGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLL 159 (354)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETT
T ss_pred hhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEcc
Confidence 6 899999999999999999999999999999999999999999999999887655667899999999999999999999
Q ss_pred CCCCC-CceEEEecc--cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeecc----CC
Q 001022 286 PQTGN-GLAKIRLQS--LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI----TG 354 (1186)
Q Consensus 286 ~~~~~-~~~~i~~~~--~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~----tg 354 (1186)
++.+. ....++.+. ...+.+++++.|.+++++..+|..|..+|.++.|. |||||+||+|+|.+.... ..
T Consensus 160 ~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~ 239 (354)
T 3gbj_A 160 DPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTS 239 (354)
T ss_dssp C------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSCEE
T ss_pred CCCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCCC
Confidence 87542 223333322 34577999999999999999999999999998874 999999999999875321 22
Q ss_pred ceeeeeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhcc------CCCcccCCCCccccccccccCCCc
Q 001022 355 ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS------RKDIVPYENSMLTKVLADSLGESS 428 (1186)
Q Consensus 355 ~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~------k~~hVPYRdSKLTrLLqDSLGGNS 428 (1186)
....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++ +..||||||||||+||||+|||||
T Consensus 240 ~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGns 319 (354)
T 3gbj_A 240 GEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNS 319 (354)
T ss_dssp EEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTC
T ss_pred CeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCC
Confidence 34679999999999999999999999999999999999999999999985 457999999999999999999999
Q ss_pred cccEEEeeCCCCCCHHHHHHHhHHHHHHhh
Q 001022 429 KTLMIVNICPNAANMSETLSSLNFSSRARS 458 (1186)
Q Consensus 429 KTlMIv~ISPs~~~~~ETLsTLrFAsRAR~ 458 (1186)
+|+||+||||+..+++||++||+||.||+.
T Consensus 320 kt~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 320 KTAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999975
No 25
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=1.2e-76 Score=668.89 Aligned_cols=306 Identities=30% Similarity=0.506 Sum_probs=247.9
Q ss_pred CCCCEEEEEeeCCCCCCC----CCceEeec-CCcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhHhhhc
Q 001022 142 AKGNIKVFCRTRPLFEDE----GPSVVEFT-DDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSAL 215 (1186)
Q Consensus 142 lkGnIRVf~RVRPl~~~E----~~svV~~~-d~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFee-V~PLV~svL 215 (1186)
..++|||+|||||+++.| ...++.+. +...+.+ ...+.|.||+||+++++|++||+. +.|+|+++|
T Consensus 9 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~--------~~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l 80 (344)
T 4a14_A 9 EEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTL--------GRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFF 80 (344)
T ss_dssp CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEE--------TTTEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred cccceEEEEEecccchHHHhccCeeEEEEcCCCceEEe--------cccceEEEEEEEecCcchhHHHHHHHHHHHHHHH
Confidence 368999999999998765 23444443 3334433 234889999999999999999998 599999999
Q ss_pred CCccEEEEeeccCCCCcccccccC------CCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCC
Q 001022 216 DGYNVSIFAYGQTHSGKTHTMEGS------SHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG 289 (1186)
Q Consensus 216 dGyNvcIfAYGQTGSGKTyTM~Gs------~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~ 289 (1186)
+|||+||||||||||||||||+|+ .+++|||||++++||+.++.. ....|.|+|||+|||||+|+|||++..
T Consensus 81 ~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~--~~~~~~v~vS~~EIYnE~i~DLL~~~~ 158 (344)
T 4a14_A 81 EGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDEN--DLLDCLVHVSYLEVYKEEFRDLLEVGT 158 (344)
T ss_dssp TTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHC--TTSEEEEEEEEEEEETTEEEETTSSCC
T ss_pred hhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccc--cceeeEEEEehhhhhHHHHHHHHHhcc
Confidence 999999999999999999999997 367999999999999998753 467899999999999999999998653
Q ss_pred C-CceEEEeccc--ccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeecc--------CC
Q 001022 290 N-GLAKIRLQSL--ESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLI--------TG 354 (1186)
Q Consensus 290 ~-~~~~i~~~~~--~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~--------tg 354 (1186)
. ....++.+.. ..+.+++++.|.++++++.+|..|..+|.++.|. |||||+||+|+|.+.+.. .+
T Consensus 159 ~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~ 238 (344)
T 4a14_A 159 ASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPG 238 (344)
T ss_dssp CGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------
T ss_pred ccccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCcccc
Confidence 2 3344554433 4567899999999999999999999999988874 899999999999987532 23
Q ss_pred ceeeeeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccC---CCcccCCCCccccccccccCCCcccc
Q 001022 355 ENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSR---KDIVPYENSMLTKVLADSLGESSKTL 431 (1186)
Q Consensus 355 ~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k---~~hVPYRdSKLTrLLqDSLGGNSKTl 431 (1186)
....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+++ ..||||||||||+||||+|||||+|+
T Consensus 239 ~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~ 318 (344)
T 4a14_A 239 QLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTV 318 (344)
T ss_dssp CEEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEE
T ss_pred ceeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceE
Confidence 456799999999999999999999999999999999999999999999863 46999999999999999999999999
Q ss_pred EEEeeCCCCCCHHHHHHHhHHHHHHh
Q 001022 432 MIVNICPNAANMSETLSSLNFSSRAR 457 (1186)
Q Consensus 432 MIv~ISPs~~~~~ETLsTLrFAsRAR 457 (1186)
||+||||+..+++||++||+||+|||
T Consensus 319 mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 319 MIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCccchhHHhhhhhhhhhcC
Confidence 99999999999999999999999985
No 26
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=3.9e-76 Score=664.33 Aligned_cols=304 Identities=25% Similarity=0.426 Sum_probs=245.5
Q ss_pred cCCCCEEEEEeeCCCCCCC---CCceEeecC---CcEEEEecCCCccCCCCceeecceeeCCCCChhhHHhc-hHHhHhh
Q 001022 141 TAKGNIKVFCRTRPLFEDE---GPSVVEFTD---DCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQAELFSD-VQPFVQS 213 (1186)
Q Consensus 141 elkGnIRVf~RVRPl~~~E---~~svV~~~d---~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQeeVFee-V~PLV~s 213 (1186)
...++|||+|||||+.+.+ ...++.+++ +..+.+ ..+.|+||+||+++++|++||+. +.|+|++
T Consensus 19 ~~~~~VrV~vRvRP~~~~e~~~~~~~v~~~~~~~~~~~~~---------~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~ 89 (344)
T 3dc4_A 19 AKLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIV---------DQNEFHFDHAFPATISQDEMYQALILPLVDK 89 (344)
T ss_dssp CCCSEEEEEEEECCCC-------CCSEECCSSSCSSEEEE---------TTEEEECSEEECTTCCHHHHHHHHTHHHHHH
T ss_pred CCCCCeEEEEECCCCCcccccCCceEEEecCCCCCceEEe---------cCcEEEcceEECCCCCHHHHHHhhccchhhH
Confidence 5678999999999998654 234566543 334433 23799999999999999999998 5999999
Q ss_pred hcCCccEEEEeeccCCCCcccccccCC------CCCCcHHHHHHHHHHhhccCcc-cccccceeEEEEEEecccccccCC
Q 001022 214 ALDGYNVSIFAYGQTHSGKTHTMEGSS------HDRGLYARCFEELFDLSNSDTT-ATARFNFAVTVFELYNEQLRELLP 286 (1186)
Q Consensus 214 vLdGyNvcIfAYGQTGSGKTyTM~Gs~------~~~GIIPRaledLF~~i~~~~~-~~~~y~V~VS~lEIYNE~V~DLL~ 286 (1186)
+++|||+||||||||||||||||+|++ +++|||||++++||+.+..... ....|.|+|||+|||||+|+|||.
T Consensus 90 ~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 169 (344)
T 3dc4_A 90 LLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLG 169 (344)
T ss_dssp HHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTS
T ss_pred hhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccC
Confidence 999999999999999999999999864 5689999999999998865432 345799999999999999999998
Q ss_pred CCCCCceEEEecccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccCCceeeeeeE
Q 001022 287 QTGNGLAKIRLQSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLS 362 (1186)
Q Consensus 287 ~~~~~~~~i~~~~~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~ 362 (1186)
+...... ......+++...|.+.+++..+|..|.++|.++.|. |||||+||+|+|.+. ...|+|+
T Consensus 170 ~~~~~~~-----~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~------~~~skl~ 238 (344)
T 3dc4_A 170 STPHMPM-----VAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK------THHSRMN 238 (344)
T ss_dssp SCTTSBC-----CSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS------SCEEEEE
T ss_pred CCCCCcc-----ccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec------CcEEEEE
Confidence 7653221 112234778889999999999999999999998875 899999999999753 3579999
Q ss_pred EEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCccccEEEeeCCCCCC
Q 001022 363 LVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAAN 442 (1186)
Q Consensus 363 LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~ 442 (1186)
|||||||||+.++++.|.+++|+.+||+||++||+||.+|+.++.||||||||||+||||+|||||+|+||+||||+..+
T Consensus 239 lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~ 318 (344)
T 3dc4_A 239 IVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCD 318 (344)
T ss_dssp EEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTCSSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCGGG
T ss_pred EEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccCCcCCccccHHHHHHHHHhCCCCEEEEEEEeCCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHhhcccccC
Q 001022 443 MSETLSSLNFSSRARSTVLSLG 464 (1186)
Q Consensus 443 ~~ETLsTLrFAsRAR~I~~~~~ 464 (1186)
++||++||+||+||+.....+.
T Consensus 319 ~~ETlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 319 LSETLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHhhcCCCCC
Confidence 9999999999999998755443
No 27
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=1.7e-76 Score=670.82 Aligned_cols=313 Identities=28% Similarity=0.392 Sum_probs=266.7
Q ss_pred CEEEEEeeCCCCCCC----CCceEeecCCcEEEEecCCCccC----CCCceeecceeeCCCCChhhHHhc-hHHhHhhhc
Q 001022 145 NIKVFCRTRPLFEDE----GPSVVEFTDDCTIRVNTGDDTIS----NPKKDFEFDRVYGPHVGQAELFSD-VQPFVQSAL 215 (1186)
Q Consensus 145 nIRVf~RVRPl~~~E----~~svV~~~d~~tI~v~~~~~~~~----~~~k~FtFD~VF~p~asQeeVFee-V~PLV~svL 215 (1186)
||||||||||+++.| ...++.+.++++|.+..+..... ...+.|.||+||+++++|++||+. +.|+|++++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~ 80 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY 80 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence 799999999998765 24577888888888765432111 124689999999999999999997 599999999
Q ss_pred C-CccEEEEeeccCCCCcccccccCC-----CCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccccCCCCC
Q 001022 216 D-GYNVSIFAYGQTHSGKTHTMEGSS-----HDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRELLPQTG 289 (1186)
Q Consensus 216 d-GyNvcIfAYGQTGSGKTyTM~Gs~-----~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~DLL~~~~ 289 (1186)
+ |||+||||||||||||||||+|+. +++|||||++++||..++.. ...+.|.|+|||+|||||+|+|||.+..
T Consensus 81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~~v~vS~~EIYnE~v~DLL~~~~ 159 (360)
T 1ry6_A 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIY-DKDNTKGIFISFYEIYCGKLYDLLQKRK 159 (360)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHH-CSSSCEEEEEEEEEEETTEEEESCCC--
T ss_pred cCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhh-ccCCceEEEEEEEEeeCCeeEEcccCCc
Confidence 5 999999999999999999999974 67999999999999988643 2457899999999999999999998754
Q ss_pred CCceEEEe--cccccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEEeeccCCceeeeeeEE
Q 001022 290 NGLAKIRL--QSLESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYYNNLITGENLYSKLSL 363 (1186)
Q Consensus 290 ~~~~~i~~--~~~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~~n~~tg~~~~SkL~L 363 (1186)
.. .+.. .....+.++++..|.+++|++.+|..|..+|.++.|. |||||+||+|++.+.+ .....|+|+|
T Consensus 160 ~~--~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~---~~~~~skL~l 234 (360)
T 1ry6_A 160 MV--AALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN---KNTSLGKIAF 234 (360)
T ss_dssp -----------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT---TTEEEEEEEE
T ss_pred cc--eeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc---CCcceeEEEE
Confidence 22 2222 2234577899999999999999999999999888764 9999999999998754 3456799999
Q ss_pred EecCCCccccccCCcc-chhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCccccEEEeeCCCCCC
Q 001022 364 VDLAGSEGLIAEDDSG-ERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAAN 442 (1186)
Q Consensus 364 VDLAGSER~~ks~a~G-~RLkEa~~INkSLsALg~VIsALa~k~~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~ 442 (1186)
||||||||..++++.| .+++|+.+||+||++||+||.+|..++.||||||||||+||||+|||||+|+||+||||+..+
T Consensus 235 VDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~ 314 (360)
T 1ry6_A 235 IDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISC 314 (360)
T ss_dssp EECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGG
T ss_pred EECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCccc
Confidence 9999999999998876 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHhhccccc
Q 001022 443 MSETLSSLNFSSRARSTVLSL 463 (1186)
Q Consensus 443 ~~ETLsTLrFAsRAR~I~~~~ 463 (1186)
++||++||+||+||++|++.+
T Consensus 315 ~~ETlsTLrfA~rak~i~n~~ 335 (360)
T 1ry6_A 315 CEQTLNTLRYSSRVKNKGNSK 335 (360)
T ss_dssp HHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHHhhcccCc
Confidence 999999999999999998643
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=3.7e-73 Score=692.18 Aligned_cols=325 Identities=31% Similarity=0.460 Sum_probs=260.4
Q ss_pred hhhhhhhccCCCCEEEEEeeC----CCCCCC---C--CceEeecC------CcEEEEecCCCccCCCCceeecceeeCCC
Q 001022 133 KRLFNDLLTAKGNIKVFCRTR----PLFEDE---G--PSVVEFTD------DCTIRVNTGDDTISNPKKDFEFDRVYGPH 197 (1186)
Q Consensus 133 kkLhN~l~elkGnIRVf~RVR----Pl~~~E---~--~svV~~~d------~~tI~v~~~~~~~~~~~k~FtFD~VF~p~ 197 (1186)
+.+-.++..+.+++||||||| |.+..| + ...++.|+ ...|.+..+.. .....+.|+||+||+++
T Consensus 363 ~~Aq~~~~~il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~fd~vf~~~ 441 (715)
T 4h1g_A 363 AAAQTNAAALKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNIN-NNFSNLRFLFDKIFERE 441 (715)
T ss_dssp HHHHHHHSSSSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEET-TEEEEEEEECSEEECSS
T ss_pred HHHHHHHHHHHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCC-CCCCCeEEEeceEeCCC
Confidence 344456778899999999999 444332 1 12334333 23455543321 22345899999999999
Q ss_pred CChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEe
Q 001022 198 VGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELY 277 (1186)
Q Consensus 198 asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIY 277 (1186)
++|++||+.|.|+|+++|+|||+||||||||||||||||+|+ ++|||||++++||+.+.........|.|+|||+|||
T Consensus 442 ~~q~~v~~~~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiy 519 (715)
T 4h1g_A 442 QSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIY 519 (715)
T ss_dssp CCHHHHGGGTHHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhCCceEEEEccCCCCCchhhccCCC--CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEE
Confidence 999999999999999999999999999999999999999984 589999999999999876666678999999999999
Q ss_pred cccccccCCCCCCC--ceEEEecc---cccceeeeeeccCCHHHHHHHHHHHHhhcCCCCCC----CceeEEEEEEEEEE
Q 001022 278 NEQLRELLPQTGNG--LAKIRLQS---LESSIELVQEKVDNPLEFSKVLKSAFQSRGNDVSK----FNVSHLIIMIHIYY 348 (1186)
Q Consensus 278 NE~V~DLL~~~~~~--~~~i~~~~---~~~v~~Lte~~V~S~~E~~~lL~~g~~~R~~~~T~----SSRSH~IftI~V~~ 348 (1186)
||+|+|||.+.... ...++... ...+.+++++.|.+++++..+|..|.++|+++.|. |||||+||+|+|.+
T Consensus 520 ne~i~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~ 599 (715)
T 4h1g_A 520 NEAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQG 599 (715)
T ss_dssp TTEEEESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEE
T ss_pred CCEEEECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEE
Confidence 99999999875432 22233222 23567899999999999999999999999988774 99999999999999
Q ss_pred eeccCCceeeeeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhcc-CCCcccCCCCccccccccccCCC
Q 001022 349 NNLITGENLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTS-RKDIVPYENSMLTKVLADSLGES 427 (1186)
Q Consensus 349 ~n~~tg~~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~-k~~hVPYRdSKLTrLLqDSLGGN 427 (1186)
.+...+....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+. +..||||||||||+||||+||||
T Consensus 600 ~~~~~~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn 679 (715)
T 4h1g_A 600 YNSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGN 679 (715)
T ss_dssp EETTTCCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTT
T ss_pred EecCCCCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCC
Confidence 98888888899999999999999999999999999999999999999999999975 45899999999999999999999
Q ss_pred ccccEEEeeCCCCCCHHHHHHHhHHHHHHhhcc
Q 001022 428 SKTLMIVNICPNAANMSETLSSLNFSSRARSTV 460 (1186)
Q Consensus 428 SKTlMIv~ISPs~~~~~ETLsTLrFAsRAR~I~ 460 (1186)
|+|+|||||||+..+++||++||+||+||++|+
T Consensus 680 ~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 680 SKTLMFVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp CEEEEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred ceEEEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence 999999999999999999999999999999985
No 29
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.7e-32 Score=295.21 Aligned_cols=273 Identities=11% Similarity=0.184 Sum_probs=185.9
Q ss_pred ChhHHHHhhhhhhhccCCCCEEEEEeeCCCC-CCCCCceEeecCCcEEEEecCCCccCCCCceeecceeeCCCCChh--h
Q 001022 126 SPLINEKKRLFNDLLTAKGNIKVFCRTRPLF-EDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHVGQA--E 202 (1186)
Q Consensus 126 ~~~~~eRkkLhN~l~elkGnIRVf~RVRPl~-~~E~~svV~~~d~~tI~v~~~~~~~~~~~k~FtFD~VF~p~asQe--e 202 (1186)
..+...||+|||.++|+||||||||||||.. + ....+.+++.+ |.+.. ..+.|.||+||+|.++|+ +
T Consensus 6 eqE~~~RRkL~NsI~ELKGnIRVFcrvrp~~~p--~~~~v~y~~~~-I~v~~-------~~k~f~FDRVf~p~s~Qe~~~ 75 (298)
T 2o0a_A 6 EKELLRSRRLENSIIEQKGTMRCYAYVMEQNLP--ENLLFDYENGV-ITQGL-------SEHVYKFNRVIPHLKVSEDKF 75 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEECGGGSC--TTEEEETTTTE-EEETT-------TCCEEECSEEEETTTSCHHHH
T ss_pred HHHHHHHHHHHhHHHHhhCceEEEEEeccccCC--ccceeecCccc-eeecC-------CCceEEeeeEECccccccHHH
Confidence 3456779999999999999999999999965 4 22347888776 66522 128999999999999999 9
Q ss_pred HHhchHHhHhhhcC-CccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEe-ccc
Q 001022 203 LFSDVQPFVQSALD-GYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELY-NEQ 280 (1186)
Q Consensus 203 VFeeV~PLV~svLd-GyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIY-NE~ 280 (1186)
||+++.++|++||+ |||+||||||||||||| ||++..+|.....- ..|.|.+.+||+||| ||.
T Consensus 76 vf~E~~~~i~scLd~GyNvcIfSyGQTGsGKT-------------~ral~q~f~~~~~~--~~~~Y~~tlq~veLy~Ne~ 140 (298)
T 2o0a_A 76 FTQEYSVYHDMCLNQKKNFNLISLSTTPHGSL-------------RESLIKFLAEKDTI--YQKQYVITLQFVFLSDDEF 140 (298)
T ss_dssp HHHTTHHHHHHHHHTTCCEEEEEECSSCCHHH-------------HHHHHHHHHSTTSH--HHHHEEEEEEEEEEECC-C
T ss_pred HHHHHHHHHHHHHhCCCceEEEEECCCCCCcc-------------HHHHHHHHHHhhhh--cccceEEEEEEEEEecCCc
Confidence 99999999999999 99999999999999999 99999999865320 128999999999999 999
Q ss_pred ccccCCCCCCC-ceEE--EecccccceeeeeeccCC-HHHHHHHHHHHHhhcCCCCCCCc-eeEEEEEEEEEEeeccCCc
Q 001022 281 LRELLPQTGNG-LAKI--RLQSLESSIELVQEKVDN-PLEFSKVLKSAFQSRGNDVSKFN-VSHLIIMIHIYYNNLITGE 355 (1186)
Q Consensus 281 V~DLL~~~~~~-~~~i--~~~~~~~v~~Lte~~V~S-~~E~~~lL~~g~~~R~~~~T~SS-RSH~IftI~V~~~n~~tg~ 355 (1186)
++|||..++.+ ...+ ..++...+.+++.+.|.+ .+|+..++..+..- ..+ +.-.|+.+.+...+....+
T Consensus 141 ~~DLL~~~~~~~k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~~------~~~~~gi~i~k~~~~~~~~~~~~ 214 (298)
T 2o0a_A 141 SQDMLLDYSHNDKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEHP------NLPHSGMGIIKVQFFPRDSKSDG 214 (298)
T ss_dssp EEETTSCCC------CEEEECSSCEEEESCCEEESSGGGGSCTTTTCC-------------CEEEEEEEEEEESCC----
T ss_pred hHHhcCCCCCCCcceEEecCCCCEEecccEEEEccccHHHHHHHhhccccc------ccCCCCceEEEEEEecCcccccc
Confidence 99999744433 2222 334445677888999999 77776655211111 111 2355666666664322111
Q ss_pred ---eeeeeeEEEecCCCccccccCCccchhHHHHHhhhhhHHHHHHHHhhccCCCcccCCCCccccccccccCCCccccE
Q 001022 356 ---NLYSKLSLVDLAGSEGLIAEDDSGERITDVLHVMKSLSALGDVLSSLTSRKDIVPYENSMLTKVLADSLGESSKTLM 432 (1186)
Q Consensus 356 ---~~~SkL~LVDLAGSER~~ks~a~G~RLkEa~~INkSLsALg~VIsALa~k~~hVPYRdSKLTrLLqDSLGGNSKTlM 432 (1186)
...--+.|+.+.-.. +...|.+ ++..+ -+-.|+++-+|+..| -..|-++
T Consensus 215 ~~~~~~~d~yf~e~~~~~--------------------~~~~l~~---~~~~~----~~~~spi~~il~~ll-~~tks~~ 266 (298)
T 2o0a_A 215 NNDPVPVDFYFIELNNLK--------------------SIEQFDK---SIFKK----ESCETPIALVLKKLI-SDTKSFF 266 (298)
T ss_dssp ---CCCEEEEEEEECSHH--------------------HHHHHHH---HHHTC-----CCCSHHHHHHHHHH-HHSBCEE
T ss_pred cCCCCceEEEEEEeCCHH--------------------HHHHHHh---hcccc----cccCCcHHHHHHHHH-hcCcceE
Confidence 123456777553222 1222222 22222 345788888888655 3578899
Q ss_pred EEeeCCCCCCHHHHHHHhHHHHHHhhccc
Q 001022 433 IVNICPNAANMSETLSSLNFSSRARSTVL 461 (1186)
Q Consensus 433 Iv~ISPs~~~~~ETLsTLrFAsRAR~I~~ 461 (1186)
++++.-+..+ -.-|..++++..+.+
T Consensus 267 ~~~l~~~~~~----~~lL~~s~~i~~~~~ 291 (298)
T 2o0a_A 267 LLNLNDSKNV----NKLLTISEEVQTQLC 291 (298)
T ss_dssp EEEECCGGGH----HHHHHHHHHHHHHTC
T ss_pred EEEecCCCch----hHHHHHHHHhhcccC
Confidence 9999764332 236777777776554
No 30
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.90 E-value=1.6e-25 Score=212.27 Aligned_cols=79 Identities=38% Similarity=0.571 Sum_probs=74.8
Q ss_pred HHhhhhhHHHHHHHHhhccC-CCcccCCCCccccccccccCCCccccEEEeeCCCCCCHHHHHHHhHHHHHHhhcccccC
Q 001022 386 LHVMKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLG 464 (1186)
Q Consensus 386 ~~INkSLsALg~VIsALa~k-~~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRAR~I~~~~~ 464 (1186)
.+||+||++||+||.+|+.+ ..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||+.|.+.+.
T Consensus 2 ~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~~ 81 (100)
T 2kin_B 2 KNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS 81 (100)
T ss_dssp CBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEEC
T ss_pred CcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcce
Confidence 46999999999999999986 68999999999999999999999999999999999999999999999999999987654
No 31
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.90 E-value=1.4e-24 Score=211.30 Aligned_cols=76 Identities=41% Similarity=0.612 Sum_probs=72.3
Q ss_pred hhhhHHHHHHHHhhccC-CCcccCCCCccccccccccCCCccccEEEeeCCCCCCHHHHHHHhHHHHHHhhcccccC
Q 001022 389 MKSLSALGDVLSSLTSR-KDIVPYENSMLTKVLADSLGESSKTLMIVNICPNAANMSETLSSLNFSSRARSTVLSLG 464 (1186)
Q Consensus 389 NkSLsALg~VIsALa~k-~~hVPYRdSKLTrLLqDSLGGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRAR~I~~~~~ 464 (1186)
|+||++||+||.+|+.+ +.||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+||+.|.+.+.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~ 77 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS 77 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCce
Confidence 89999999999999986 47999999999999999999999999999999999999999999999999999987654
No 32
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=98.18 E-value=1.5e-05 Score=88.55 Aligned_cols=140 Identities=15% Similarity=0.246 Sum_probs=96.7
Q ss_pred hcChhHHHHhhhhhhhccCCCCEEEEEeeCCCCCCCCCceEeecCCcEEEEecCCCccCCCCceeecceeeCCCC--Chh
Q 001022 124 RISPLINEKKRLFNDLLTAKGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPHV--GQA 201 (1186)
Q Consensus 124 r~~~~~~eRkkLhN~l~elkGnIRVf~RVRPl~~~E~~svV~~~d~~tI~v~~~~~~~~~~~k~FtFD~VF~p~a--sQe 201 (1186)
++..+...||+|-|.+.|+||.||+|+=+-+-.-++ ...|.+.+. +|. +. ...+.|.|++|++... .+.
T Consensus 39 KmeqE~lrRRkLENSIdElKG~IRcFAYi~~~~~p~-~~~idY~~~-~It-~~------~~~~~y~FnRiIp~~~~~e~~ 109 (333)
T 4etp_B 39 TVCKELLRSRRLENSIIEQKGTMRVYAYVMEQNLPE-NLLFDYENG-VIT-QG------LSEHVYKFNRVIPHLKVSEDC 109 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSCCS-SCEEETTTT-EEE-C--------CCCEEECSEEEETTTCCHHH
T ss_pred HHHHHHHHHHHHhhhHHHhcCcEEEEEEECcccCCc-cEEEecccc-eEe-ec------CCcceEEEeeeechhhcchHH
Confidence 334456679999999999999999999887632222 234555443 343 11 1348999999998776 677
Q ss_pred hHHhchHHhHhhhc-CCccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccC-cccccccceeEEEEEEecc
Q 001022 202 ELFSDVQPFVQSAL-DGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSD-TTATARFNFAVTVFELYNE 279 (1186)
Q Consensus 202 eVFeeV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~-~~~~~~y~V~VS~lEIYNE 279 (1186)
.+|++.+..++-|+ .+.|+.||..|+.- .+ ..-..|+..+... .--.+.|.+.+.|+.+-++
T Consensus 110 ~l~qE~q~y~DmcL~~~~NfslIsis~~~-------------w~---~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~ 173 (333)
T 4etp_B 110 FFTQEYSVYHDMALNQKKNFNLISLSTTP-------------HG---SLRESLIKFLAEKDTIYQKQYVITLQFVFLSDD 173 (333)
T ss_dssp HHHHTTHHHHHHHHHTTCCEEEEEEESSC-------------CC---HHHHHHHHHHHSTTCHHHHHEEEEEEEEECCSS
T ss_pred HHHHHHHHHHHHHHccCCCeeEEEecCCC-------------cH---HHHHHHHHHHHhcccccccceEEEEEEEEEcCC
Confidence 78889999999999 99999999998641 11 1233333333221 0014778999999888777
Q ss_pred c-ccccCCCC
Q 001022 280 Q-LRELLPQT 288 (1186)
Q Consensus 280 ~-V~DLL~~~ 288 (1186)
. .-|||.+.
T Consensus 174 ~~S~DlL~~~ 183 (333)
T 4etp_B 174 EFSQDMLLDY 183 (333)
T ss_dssp SCCEESSCC-
T ss_pred Cchhhhhccc
Confidence 6 79999775
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.32 E-value=0.071 Score=63.39 Aligned_cols=26 Identities=8% Similarity=0.111 Sum_probs=14.5
Q ss_pred EEeeCCCCCCHHHHHHHhHHHHHHhh
Q 001022 433 IVNICPNAANMSETLSSLNFSSRARS 458 (1186)
Q Consensus 433 Iv~ISPs~~~~~ETLsTLrFAsRAR~ 458 (1186)
+||-.+........+..+.....+..
T Consensus 391 ~cc~~~~~~~~~~~~~~l~~~~~~~~ 416 (597)
T 3oja_B 391 LCCKESDKPYLDRLLQYIALTSVVEK 416 (597)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHHHHT
T ss_pred ccccCCCccchhHHHHHhhHHHHhhc
Confidence 55655555555555666655554443
No 34
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.04 E-value=0.87 Score=49.41 Aligned_cols=91 Identities=14% Similarity=0.214 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcccccccccC
Q 001022 541 DKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNEALHSSEVRSTIRSEPMPAVSSVLRTT 620 (1186)
Q Consensus 541 ek~k~ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLke~l~s~s~~~~~r~e~~~~s~s~~~~~ 620 (1186)
..+...+..+..+.+.+.++....++.+..+...+..+..++..+..++.++.
T Consensus 97 kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~--------------------------- 149 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVE--------------------------- 149 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------
Confidence 33444445555555555555544444444555555555555555555554442
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 621 GDGMDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 621 ~e~~d~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
..+..+..++++-.++|+++....-.++=..|+++...
T Consensus 150 ---~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Yerir~~ 187 (256)
T 3na7_A 150 ---NEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRRW 187 (256)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 02334445555556677777777777777788887763
No 35
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.41 E-value=3.1 Score=43.76 Aligned_cols=36 Identities=28% Similarity=0.467 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhh
Q 001022 626 SSAVSKKLEEELKKRDALI---ERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 626 ~~~~~kKLEEeLkkrd~lI---e~l~ee~ekl~~rlt~k 661 (1186)
..+..-=||.+|..++.+- .|+..++..|.+++.-+
T Consensus 142 aiEr~alLE~El~EKe~l~~~~QRLkdE~rDLk~El~v~ 180 (189)
T 2v71_A 142 AIERNAFLESELDEKESLLVSVQRLKDEARDLRQELAVR 180 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455677777666554 56666666666665544
No 36
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=95.22 E-value=0.29 Score=57.78 Aligned_cols=94 Identities=9% Similarity=0.113 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 483 LYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQ 562 (1186)
Q Consensus 483 l~~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~qk~~k~~~elq~~L~se~~~L~ek~k~ekE~~~qL~~ql~qLl~ 562 (1186)
..++...|.+|+.+++.+.+.......-...+.++++++.....+..+...+-...|+..+..++++++..-.++..|+.
T Consensus 59 ErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQs 138 (562)
T 3ghg_A 59 NQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQK 138 (562)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888866666555555555555544444443333322222223334444444433333333333333
Q ss_pred HHHHHHHHHHHHHH
Q 001022 563 LEQEQKMQIQQRDS 576 (1186)
Q Consensus 563 ~eeE~k~qiqq~e~ 576 (1186)
..+++..+|+++|.
T Consensus 139 nLedq~~kIQRLEv 152 (562)
T 3ghg_A 139 NVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.85 E-value=0.17 Score=60.17 Aligned_cols=46 Identities=9% Similarity=0.206 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 547 kE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
+++.++++++..++.+..++++.++.+..+++..+++++.+|+.++
T Consensus 536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 536 QKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444445544444555555555555555555555555443
No 38
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.68 E-value=0.008 Score=60.24 Aligned_cols=52 Identities=19% Similarity=0.167 Sum_probs=40.9
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
+.++||.....+..|.++++.+..++.++--.....++-||++|||||+.+.
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 4578898777667799999888888887654444557779999999999883
No 39
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.66 E-value=6 Score=42.81 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 629 VSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 629 ~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
+...+++.-+..++.++.+.++...+..+-.+.
T Consensus 137 ~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l 169 (256)
T 3na7_A 137 LEKLALELESLVENEVKNIKETQQIIFKKKEDL 169 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555566666666554444433
No 40
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.60 E-value=0.13 Score=67.01 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=25.0
Q ss_pred CcHHHHHHHHHHhhccCcccc-cccceeEEEEEEecccccc
Q 001022 244 GLYARCFEELFDLSNSDTTAT-ARFNFAVTVFELYNEQLRE 283 (1186)
Q Consensus 244 GIIPRaledLF~~i~~~~~~~-~~y~V~VS~lEIYNE~V~D 283 (1186)
+|+.|.+.+|...|+..-... ......|.++.||+=.+++
T Consensus 432 ~lY~~lF~wlv~~iN~~l~~~~~~~~~~IgvLDi~GFE~f~ 472 (1184)
T 1i84_S 432 AKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFE 472 (1184)
T ss_dssp HHHHHHHHHHHHHHTTTCC------CEEEEEEECCCCCCCS
T ss_pred HHHHHHHHHHHHHHHHhhCCCccCCcceEEEeecCCcCCCC
Confidence 677788888888776533222 2345678889998666555
No 41
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.06 E-value=0.14 Score=66.64 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001022 488 KEIQDLKQEILGLRQALKEAND 509 (1186)
Q Consensus 488 ~eI~eLkeEI~~Lr~~L~~~~~ 509 (1186)
.++.+|++++..++..+.....
T Consensus 857 ~El~~L~~eL~el~~~L~~le~ 878 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEA 878 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554444433
No 42
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.78 E-value=1.1 Score=57.88 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=26.4
Q ss_pred CcHHHHHHHHHHhhccCcccccccceeEEEEEEecccccc
Q 001022 244 GLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQLRE 283 (1186)
Q Consensus 244 GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~V~D 283 (1186)
+|..|.+.+|...|+..-.........|.++.||+=++++
T Consensus 406 ~lY~~LF~wlV~~iN~~l~~~~~~~~~IgvLDI~GFE~f~ 445 (1080)
T 2dfs_A 406 HIYANLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFE 445 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSCCCEEEEEEEECCCCCCS
T ss_pred HHHHHHHHHHHHHHHHhhccccccCceEEeeccCCccccC
Confidence 6777888888777764222222345678899999766655
No 43
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.28 E-value=3.4 Score=58.85 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=14.3
Q ss_pred HHhhHHHHHhhCcccccc--------CchhHHHHHHHHHHHHHHHHhhcccceee
Q 001022 1100 MLTSLDELAERMPSLLDI--------DHPCAQRQIADARRMVEVLQQMRSDVALL 1146 (1186)
Q Consensus 1100 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1146 (1186)
+..-++++.+++|..++. ..|-.-=...+..++-+.|..||++..=|
T Consensus 2981 v~~~~~~~l~~lP~~~~~~~~~~~~~~~pl~~vl~QE~~r~n~Ll~~ir~sL~~L 3035 (3245)
T 3vkg_A 2981 LRATITEWTKLLPKPLKQLKRTTQNIKDPLFRCFEREISTGGKLVKKITNDLANL 3035 (3245)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 666677777788776642 12322222345566666777777765433
No 44
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.25 E-value=0.03 Score=56.89 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=38.4
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCcc-EEEEeeccCCCCccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYN-VSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyN-vcIfAYGQTGSGKTyTM 236 (1186)
..++||.+...+..+..+++.+..++...-.++. ..|+-||++|+||||.+
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 4567888776665777788877777776544432 67888999999999987
No 45
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.89 E-value=11 Score=39.74 Aligned_cols=35 Identities=11% Similarity=0.349 Sum_probs=16.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 469 IKKWRDIANDARKELYEREKEIQDLKQEILGLRQA 503 (1186)
Q Consensus 469 ikk~k~i~~~~~~el~~le~eI~eLkeEI~~Lr~~ 503 (1186)
+..|+..+......+..++.++.+.+..=..|...
T Consensus 12 ~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~E 46 (189)
T 2v71_A 12 TAYWKELSMKYKQSFQEARDELVEFQEGSRELEAE 46 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554444444444444444443333333
No 46
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=91.83 E-value=13 Score=38.12 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 635 EELKKRDALIERLHEENEKLFDRL 658 (1186)
Q Consensus 635 EeLkkrd~lIe~l~ee~ekl~~rl 658 (1186)
.++......+..+..+.+.+..++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~ 197 (284)
T 1c1g_A 174 SDLERAEERAELSEGKCAELEEEI 197 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333
No 47
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=91.69 E-value=14 Score=38.26 Aligned_cols=18 Identities=17% Similarity=0.385 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001022 572 QQRDSTIKTLQAKINSIE 589 (1186)
Q Consensus 572 qq~e~eIe~LqqeIeeLe 589 (1186)
.+++..|..|+.+++.++
T Consensus 93 ~elq~ri~~L~~El~~~k 110 (168)
T 3o0z_A 93 GDLQARITSLQEEVKHLK 110 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444443
No 48
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.59 E-value=4.9 Score=52.10 Aligned_cols=17 Identities=6% Similarity=0.286 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001022 576 STIKTLQAKINSIESQR 592 (1186)
Q Consensus 576 ~eIe~LqqeIeeLe~qL 592 (1186)
+++..|+.++..|+.++
T Consensus 1023 ~kv~~L~~e~~~L~qq~ 1039 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEK 1039 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444333
No 49
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=91.50 E-value=7.1 Score=44.84 Aligned_cols=96 Identities=11% Similarity=0.168 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 484 YEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQL 563 (1186)
Q Consensus 484 ~~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~qk~~k~~~elq~~L~se~~~L~ek~k~ekE~~~qL~~ql~qLl~~ 563 (1186)
......|.+|+.++..+.+.-.....-...+.+-+.+..+.....++...+-...|+.++..+++++...-..+..|..-
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~ 142 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKN 142 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 35567788888888888777666655555666666666665555555555555556666666666555444455555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 001022 564 EQEQKMQIQQRDSTIK 579 (1186)
Q Consensus 564 eeE~k~qiqq~e~eIe 579 (1186)
.+++..+|+++|..|+
T Consensus 143 l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 143 VRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666666553
No 50
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.11 E-value=0.077 Score=58.77 Aligned_cols=51 Identities=18% Similarity=0.322 Sum_probs=37.3
Q ss_pred eeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 187 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 187 ~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
.++||.+...+..+..++..+..++...-.+....|+-||++|+||||.+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 467887655444666777766777777655545667889999999999984
No 51
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.46 E-value=11 Score=53.91 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 485 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEV 518 (1186)
Q Consensus 485 ~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~ 518 (1186)
+...++.+|+.++..++..|++...++..+.+++
T Consensus 1931 et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A 1931 DTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQM 1964 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777766655555444443
No 52
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=90.07 E-value=15 Score=35.99 Aligned_cols=42 Identities=10% Similarity=0.162 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 551 AQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 551 ~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
.++..++..+.....+.......+...-..++.++.+|+.++
T Consensus 79 ~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 79 IQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444445555555555444
No 53
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.88 E-value=0.66 Score=54.29 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=32.8
Q ss_pred ceeecceeeCCCCChhhHHhch-HHhHh-hhcC----CccEEEEeeccCCCCccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDV-QPFVQ-SALD----GYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV-~PLV~-svLd----GyNvcIfAYGQTGSGKTyTM 236 (1186)
..-+||.|-+-+..-+++.+.| .|+.. ..+. -..-.|+-||+.|+|||++.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHH
Confidence 3457888888766555666554 45532 1221 23346888999999999765
No 54
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.66 E-value=1.3 Score=51.67 Aligned_cols=50 Identities=28% Similarity=0.461 Sum_probs=30.3
Q ss_pred eeecceeeCCCCChhhHHhch-HHhHhh-hcC--C--ccEEEEeeccCCCCccccc
Q 001022 187 DFEFDRVYGPHVGQAELFSDV-QPFVQS-ALD--G--YNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 187 ~FtFD~VF~p~asQeeVFeeV-~PLV~s-vLd--G--yNvcIfAYGQTGSGKTyTM 236 (1186)
.-+||.|-+-+.--+++.+.| .|+... .+. | ..-.|+-||+.|+|||++.
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHH
Confidence 456777777655444554444 333221 121 2 2345899999999999876
No 55
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=89.10 E-value=16 Score=42.90 Aligned_cols=107 Identities=14% Similarity=0.168 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 485 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTLQSDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLE 564 (1186)
Q Consensus 485 ~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~qk~~k~~~elq~~L~se~~~L~ek~k~ekE~~~qL~~ql~qLl~~e 564 (1186)
.....|.+|+..+..+.+.-.....-...+.+-+.+..+.....++...+ -..+|+.++..|..+.
T Consensus 62 dv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e--------------~S~eLe~ri~yIK~kV 127 (491)
T 1m1j_A 62 NYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGH--------------VSTELRRRIVTLKQRV 127 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHH--------------HHHHHHHHHHHHHHHH
Confidence 44556666666666665554433333333444444443333333333333 3333444444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccccccccc
Q 001022 565 QEQKMQIQQRDSTIKTLQAKINSIESQRNE-ALHSSEVRSTI 605 (1186)
Q Consensus 565 eE~k~qiqq~e~eIe~LqqeIeeLe~qLke-~l~s~s~~~~~ 605 (1186)
..+-.+|..+..-|+.+..+|+.||..+.. ...+...|.+.
T Consensus 128 d~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~~~Cr~pC~r~ 169 (491)
T 1m1j_A 128 ATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIRACKGSCARS 169 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTBSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhh
Confidence 333344455555666666667777665543 33455555433
No 56
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.68 E-value=1.3 Score=51.38 Aligned_cols=50 Identities=24% Similarity=0.333 Sum_probs=30.6
Q ss_pred eeecceeeCCCCChhhHHhch-HHhHhh-hcC--C--ccEEEEeeccCCCCccccc
Q 001022 187 DFEFDRVYGPHVGQAELFSDV-QPFVQS-ALD--G--YNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 187 ~FtFD~VF~p~asQeeVFeeV-~PLV~s-vLd--G--yNvcIfAYGQTGSGKTyTM 236 (1186)
.-+||.|-+-+.--+++.+.| -|+..- .+. | ..-.|+-||+.|+|||++.
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 356777777655555555544 454321 222 2 2345899999999999765
No 57
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=85.76 E-value=28 Score=34.09 Aligned_cols=44 Identities=9% Similarity=0.220 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 546 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1186)
Q Consensus 546 ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe 589 (1186)
+..++..+..++.+......++...-...+..+..|+..|++++
T Consensus 81 Le~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 81 LEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555666666666666665
No 58
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=84.33 E-value=0.38 Score=49.02 Aligned_cols=46 Identities=24% Similarity=0.437 Sum_probs=29.5
Q ss_pred eecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 188 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 188 FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
++||.+++. ..+..++..+..++.. +....|+-||++|+|||+.+.
T Consensus 25 ~~~~~~~~~-~~~~~~~~~l~~~~~~---~~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGALKSAASG---DGVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSTTTSCC---CCHHHHHHHHHHHHT---CSCSEEEEECSTTSSHHHHHH
T ss_pred CChhhccCC-CCCHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHH
Confidence 567766552 3345566555444432 345678889999999999873
No 59
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.43 E-value=0.28 Score=52.03 Aligned_cols=45 Identities=16% Similarity=0.182 Sum_probs=21.8
Q ss_pred eeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 187 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 187 ~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.|+||.+.+.+..-..+.+. +..+.. .+..|+-||.+|+|||+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~~----~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLEQ----VSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHHH----HHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHHH----HHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 47889887644333333333 333322 2356778999999999876
No 60
>4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A
Probab=82.69 E-value=1.5 Score=48.59 Aligned_cols=128 Identities=16% Similarity=0.285 Sum_probs=71.5
Q ss_pred hhhhhccCCCCEEEEEeeCCCCCCCCCceEeecCCcEEEEecCCCccCCCCceeecceeeCCC--CChhhHHhchHHhHh
Q 001022 135 LFNDLLTAKGNIKVFCRTRPLFEDEGPSVVEFTDDCTIRVNTGDDTISNPKKDFEFDRVYGPH--VGQAELFSDVQPFVQ 212 (1186)
Q Consensus 135 LhN~l~elkGnIRVf~RVRPl~~~E~~svV~~~d~~tI~v~~~~~~~~~~~k~FtFD~VF~p~--asQeeVFeeV~PLV~ 212 (1186)
|-|.+-|+||.||.|.=+-+-.-++ ...|.+.+.+ |. +. ...+.|.|++|.+.. ..++-+|++.++..+
T Consensus 4 LeNSIdElkG~iRcFAYi~e~~l~~-~~~IdY~~~t-I~--~~-----~~~~~y~F~RiIp~~~~~e~~ll~qE~~~Y~D 74 (275)
T 4gkp_A 4 LLNSITELKGCARLFANIIEDEISE-KLIVNYSDES-IE--DM-----KNHKTYKFTKLIQNFSHQNKDLFKEDLHVYID 74 (275)
T ss_dssp ------------CEEEEEETTTSCT-TEEEETTTTE-EE--ET-----TTTEEEECSEEEEECSSSCCCGGGTHHHHHHH
T ss_pred ccccHHHhcCcEEEEEEEccccCCc-cEEEecccce-ec--cC-----CCccEEEEEeeeccccCCHHHHHHHHHHHHHH
Confidence 6799999999999999885422111 2345555544 33 11 234889999998654 345566778999999
Q ss_pred hhc-CCccEEEEeeccCCCCcccccccCCCCCCcHHHHHHHHHHhhccCcccccccceeEEEEEEeccc-ccccCCCCC
Q 001022 213 SAL-DGYNVSIFAYGQTHSGKTHTMEGSSHDRGLYARCFEELFDLSNSDTTATARFNFAVTVFELYNEQ-LRELLPQTG 289 (1186)
Q Consensus 213 svL-dGyNvcIfAYGQTGSGKTyTM~Gs~~~~GIIPRaledLF~~i~~~~~~~~~y~V~VS~lEIYNE~-V~DLL~~~~ 289 (1186)
-|+ .+.|+.+|+.++.-- +-+--..+..+... -...|.+.+.++=+-.+. --|||....
T Consensus 75 mCL~k~~NfnlISiS~~~~------------~~lr~~ll~f~~~~------y~~~y~itlQ~V~Ls~~~~S~Dll~~~~ 135 (275)
T 4gkp_A 75 FCLKRRENFNLFSVGSSNI------------PNTFEKLLAFFKNN------YFDKFVITLQYVMLSDNADSQDLLSNNK 135 (275)
T ss_dssp HHHHTTCCEEEEEECCSSC------------CSHHHHHHHHHHHH------TTTTEEEEEEEEEEC----CEETTCC--
T ss_pred HHhccCCCceEEEecCCCc------------HHHHHHHHHHHHHh------ccccceEEEEEEEecCCCcccccccCCc
Confidence 999 799999999886442 22444455555542 234577888887776544 458885543
No 61
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=82.15 E-value=0.53 Score=51.97 Aligned_cols=46 Identities=17% Similarity=0.160 Sum_probs=32.2
Q ss_pred eeecceeeCCCCChhhHHhchHHhHhhhcCCccE--EEEeeccCCCCccccc
Q 001022 187 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNV--SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 187 ~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNv--cIfAYGQTGSGKTyTM 236 (1186)
.+.||.+.+ |+.+...+..++..+-.|... .++-||++|+|||+..
T Consensus 40 ~~~~~~ivG----~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 40 RQASQGMVG----QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CSEETTEES----CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred CcchhhccC----hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 455777665 555555555556555566553 7888999999999887
No 62
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=81.14 E-value=0.57 Score=51.21 Aligned_cols=50 Identities=20% Similarity=0.349 Sum_probs=31.5
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
..|+||.+... ..+...+..+..++..--. ....++-||++|+|||+.+.
T Consensus 6 ~~~~f~~fv~g-~~~~~a~~~~~~~~~~~~~-~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 6 PKYTLENFIVG-EGNRLAYEVVKEALENLGS-LYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp TTCCSSSCCCC-TTTHHHHHHHHHHHHTTTT-SCSSEEEECSSSSSHHHHHH
T ss_pred CCCCcccCCCC-CcHHHHHHHHHHHHhCcCC-CCCeEEEECCCCCcHHHHHH
Confidence 46889887632 2344455555445544211 23457889999999999883
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.39 E-value=16 Score=42.39 Aligned_cols=26 Identities=8% Similarity=-0.095 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 567 QKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 567 ~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
...++++..++.+.++.+++++..++
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
T 3oja_A 440 YQHKETQLAEENARLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 33344444444445555555444443
No 64
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=79.54 E-value=16 Score=43.52 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccccccc
Q 001022 551 AQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRNE-ALHSSEVRS 603 (1186)
Q Consensus 551 ~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLke-~l~s~s~~~ 603 (1186)
.+|+.++..|..+...+..+|+.++.-|+++..+|+.||.-+.. ...++..|.
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCs 166 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCS 166 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 35666666666555555566666666777777777777664443 334444444
No 65
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=79.01 E-value=0.73 Score=44.63 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=21.4
Q ss_pred HHhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 208 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..++..+..+....|+-||++|+|||+.+
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 33444444466667889999999999987
No 66
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=78.92 E-value=0.67 Score=45.85 Aligned_cols=43 Identities=28% Similarity=0.491 Sum_probs=25.6
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
..|+||.-+. . .+.+.+..+..+ .|. .++-||++|||||+.+.
T Consensus 12 ~~~~~~~f~~-g-~n~~~~~~l~~~-----~g~--~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 12 DYPSFDKFLG-T-ENAELVYVLRHK-----HGQ--FIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCCCCCCCCS-C-CTHHHHHHCCCC-----CCS--EEEEESSSTTTTCHHHH
T ss_pred CccchhhcCc-C-ccHHHHHHHHhc-----CCC--EEEEECCCCCCHHHHHH
Confidence 3456665443 3 333444433332 454 45669999999999983
No 67
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=78.51 E-value=60 Score=38.45 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 570 QIQQRDSTIKTLQAKINSIESQRN 593 (1186)
Q Consensus 570 qiqq~e~eIe~LqqeIeeLe~qLk 593 (1186)
.+..++..++.++.+|..|+..+.
T Consensus 169 ~i~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 169 SLRVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555566666666665554
No 68
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=78.14 E-value=0.74 Score=50.44 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=29.7
Q ss_pred eeCCCCChhhHHhchHHhHhhhc-CCccEEEEeeccCCCCccccc
Q 001022 193 VYGPHVGQAELFSDVQPFVQSAL-DGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 193 VF~p~asQeeVFeeV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 236 (1186)
+++.-..++...+.+...+..++ .+...+++-||++|+|||+++
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 33333446666666666665554 344567899999999999987
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.10 E-value=93 Score=35.99 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=6.7
Q ss_pred eeeEEEecCCCc
Q 001022 359 SKLSLVDLAGSE 370 (1186)
Q Consensus 359 SkL~LVDLAGSE 370 (1186)
..|..+||.|..
T Consensus 237 ~~L~~L~l~~N~ 248 (487)
T 3oja_A 237 QNLEHFDLRGNG 248 (487)
T ss_dssp TTCCEEECTTCC
T ss_pred CCCCEEEcCCCC
Confidence 345666666543
No 70
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=77.90 E-value=0.73 Score=49.02 Aligned_cols=51 Identities=20% Similarity=0.263 Sum_probs=30.7
Q ss_pred ceeecceeeCCCCChhhHHhchH-Hh-----HhhhcCCccEEEEeeccCCCCccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQ-PF-----VQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~-PL-----V~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..++|+.+.+.+..-+.+.+.+. ++ ....--.....|+-||++|+|||+..
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 45788888875554444444331 21 11111123445888999999999876
No 71
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=77.65 E-value=0.83 Score=48.05 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=29.1
Q ss_pred ceeecceeeCCCCChhhHHhchH-----HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQ-----PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~-----PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..++||.|.+.+....++.+-+. +.+..+---....|+-||++|+|||+.+
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 45789988876543333332211 1222221011122889999999999987
No 72
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=77.52 E-value=0.92 Score=48.30 Aligned_cols=21 Identities=38% Similarity=0.374 Sum_probs=18.6
Q ss_pred CCccEEEEeeccCCCCccccc
Q 001022 216 DGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 216 dGyNvcIfAYGQTGSGKTyTM 236 (1186)
......|+-||++|+|||++.
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 667788999999999999986
No 73
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=77.46 E-value=0.74 Score=48.64 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=32.8
Q ss_pred ceeecceeeCCCCChhhHHhchHHh-----HhhhcCCccEEEEeeccCCCCccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQPF-----VQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~PL-----V~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+.|+.+.+.+.....+.+.+..+ ...+-......|+-||++|+|||+..
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 4578899988777666665543321 11111122334889999999999987
No 74
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=76.32 E-value=0.66 Score=52.11 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=23.2
Q ss_pred hHHhHhhhc-CCccEEEEeeccCCCCccccc
Q 001022 207 VQPFVQSAL-DGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 207 V~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 236 (1186)
+...+..++ .|...+++-||++|+|||.++
T Consensus 32 i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 32 IFLPIYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 444444444 678889999999999999887
No 75
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=76.04 E-value=0.83 Score=44.40 Aligned_cols=29 Identities=17% Similarity=0.119 Sum_probs=21.4
Q ss_pred HHhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 208 QPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 208 ~PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..++..+..+....|+-||++|+|||+.+
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 34444444466667899999999999987
No 76
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=75.40 E-value=1.1 Score=51.85 Aligned_cols=50 Identities=22% Similarity=0.412 Sum_probs=31.0
Q ss_pred CceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 185 KKDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 185 ~k~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
+..|+||...... ++...+..+..++.. .|..-.++-||++|+||||.+.
T Consensus 99 ~~~~tfd~fv~g~-~n~~a~~~~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 99 NPDYTFENFVVGP-GNSFAYHAALEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp CTTCSGGGCCCCT-TTHHHHHHHHHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CCCCChhhcCCCC-chHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 3568898855322 333445444444443 2313357889999999999983
No 77
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=75.14 E-value=1.4 Score=46.38 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=29.8
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHh-hhcC----CccEEEEeeccCCCCccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQPFVQ-SALD----GYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~PLV~-svLd----GyNvcIfAYGQTGSGKTyTM 236 (1186)
..+.|+.|.+.+..-+.+.+.+..+.. ..+. .....|+-||++|+|||+.+
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 456788888755444444332222111 0111 12345899999999999887
No 78
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=74.73 E-value=1.2 Score=48.51 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=19.8
Q ss_pred HHhHhhhcC--Cc--cEEEEeeccCCCCccccc
Q 001022 208 QPFVQSALD--GY--NVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 208 ~PLV~svLd--Gy--NvcIfAYGQTGSGKTyTM 236 (1186)
..++.+.+. |. ...|+-||++|+|||+..
T Consensus 21 ~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 21 VHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp HHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred HHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 455565553 22 235777999999999876
No 79
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=72.95 E-value=0.94 Score=49.40 Aligned_cols=44 Identities=18% Similarity=0.385 Sum_probs=28.3
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..|+|+.+++.+ .+... +...++.+....|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~~----~~~~~---l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQE----DMKLA---LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSCH----HHHHH---HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccChH----HHHHH---HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 568899987743 33322 222233333445899999999999876
No 80
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=72.71 E-value=45 Score=40.57 Aligned_cols=20 Identities=5% Similarity=0.278 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001022 572 QQRDSTIKTLQAKINSIESQ 591 (1186)
Q Consensus 572 qq~e~eIe~LqqeIeeLe~q 591 (1186)
+.++.+...|+.+|++|+.+
T Consensus 563 ~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 563 EGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34567777888888888755
No 81
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=71.97 E-value=1.7 Score=46.48 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=28.7
Q ss_pred ceeecceeeCCCCChhhHHhchH-----HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQ-----PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~-----PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..++||.|.+.+....++.+-+. +.+..+---....|+-||++|||||+.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 45788888776543333332211 1122211011123889999999999987
No 82
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=70.98 E-value=1.3 Score=48.31 Aligned_cols=50 Identities=20% Similarity=0.152 Sum_probs=29.9
Q ss_pred eeecceeeCCCCChhhHHhch-HHhH-----hhhcCCccEEEEeeccCCCCccccc
Q 001022 187 DFEFDRVYGPHVGQAELFSDV-QPFV-----QSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 187 ~FtFD~VF~p~asQeeVFeeV-~PLV-----~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.++||.|.+.+..-..+.+.+ .|+. .++--.....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 466888877555444444443 2221 1111123456888999999999876
No 83
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=70.50 E-value=1.6 Score=44.55 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=20.0
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+..+++|.| ++..++||||||.+.
T Consensus 43 ~~i~~~~~~~~--~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 43 RAIMPIIEGHD--VLAQAQSGTGKTGTF 68 (224)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 34556678887 577889999999873
No 84
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=70.31 E-value=1.8 Score=46.41 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=16.6
Q ss_pred CccEEEEeeccCCCCccccc
Q 001022 217 GYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 217 GyNvcIfAYGQTGSGKTyTM 236 (1186)
.....|+-||++|+|||++.
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 44457899999999999976
No 85
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=70.17 E-value=1.6 Score=48.01 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=26.5
Q ss_pred ChhhHHhchHHhHhhhcCCcc-E--EEEeeccCCCCccccc
Q 001022 199 GQAELFSDVQPFVQSALDGYN-V--SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 199 sQeeVFeeV~PLV~svLdGyN-v--cIfAYGQTGSGKTyTM 236 (1186)
.++...+.+...+..++.|.. . +++-||++|+|||+++
T Consensus 21 gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 21 HREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 355555556556666554432 4 6888999999999987
No 86
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=70.01 E-value=82 Score=37.23 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 485 EREKEIQDLKQEILGLRQALKEANDQCVLLYN 516 (1186)
Q Consensus 485 ~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~ 516 (1186)
..+..|++|+..+.++.+.-..+.+-...+..
T Consensus 92 ~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~ 123 (461)
T 3ghg_B 92 PIRNSVDELNNNVEAVSQTSSSSFQYMYLLKD 123 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33455566666665555554444333333333
No 87
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=69.77 E-value=1.6 Score=47.58 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=24.4
Q ss_pred hhhHHhchHHhHhhhc-CCccEEEEeeccCCCCccccc
Q 001022 200 QAELFSDVQPFVQSAL-DGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 200 QeeVFeeV~PLV~svL-dGyNvcIfAYGQTGSGKTyTM 236 (1186)
++...+.+...+..++ .+...+++-||++|+|||+.+
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHH
Confidence 4444444444444443 344557889999999999887
No 88
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=69.74 E-value=2.2 Score=44.50 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=16.2
Q ss_pred ccEEEEeeccCCCCccccc
Q 001022 218 YNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 218 yNvcIfAYGQTGSGKTyTM 236 (1186)
....|+-||++|+|||+..
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4456899999999999987
No 89
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=69.68 E-value=1.8 Score=43.45 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=18.6
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.+..+++|.| ++..++||||||.+.
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHHH
Confidence 4455667877 466789999999764
No 90
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=69.23 E-value=1.9 Score=47.54 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=27.1
Q ss_pred ChhhHHhchHHhHhhhcCC-ccEEEEeeccCCCCccccc
Q 001022 199 GQAELFSDVQPFVQSALDG-YNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 199 sQeeVFeeV~PLV~svLdG-yNvcIfAYGQTGSGKTyTM 236 (1186)
.++...+.+...+..++.| ...+|+-||++|+|||+++
T Consensus 24 gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 24 FREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3555566665566665544 3458999999999999876
No 91
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=69.01 E-value=1.8 Score=43.41 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=18.6
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.+..+++|.| ++..++||||||.+.
T Consensus 31 ~i~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 31 ALPLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCCC--EEEECCCCChHHHHH
Confidence 3455677877 456789999999874
No 92
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=68.29 E-value=1.9 Score=49.91 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=32.0
Q ss_pred eeecceeeCCCCChhhHHhchHHhHhhhcCCcc--EEEEeeccCCCCccccc
Q 001022 187 DFEFDRVYGPHVGQAELFSDVQPFVQSALDGYN--VSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 187 ~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyN--vcIfAYGQTGSGKTyTM 236 (1186)
.+.||.|.+ |+++.+.+..++..+..|.. ..|+-||++|+|||+..
T Consensus 33 ~~~~~~iiG----~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVG----QENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEES----CHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccC----HHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 456677765 66676666666666655543 35777999999999876
No 93
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=68.13 E-value=1.8 Score=42.95 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=22.1
Q ss_pred hhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 200 QAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 200 QeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
+.++.+.+...+.. +....++-||++|+|||+++
T Consensus 22 ~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 22 QDEVIQRLKGYVER---KNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CHHHHHHHHHHHHT---TCCCCEEEECSTTSSHHHHH
T ss_pred cHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHH
Confidence 44444444444433 33334899999999999887
No 94
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=68.04 E-value=1.7 Score=46.59 Aligned_cols=51 Identities=22% Similarity=0.328 Sum_probs=31.1
Q ss_pred ceeecceeeCCCCChhhHHhch-HHhHh-hhcC---CccEEEEeeccCCCCccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDV-QPFVQ-SALD---GYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV-~PLV~-svLd---GyNvcIfAYGQTGSGKTyTM 236 (1186)
....|+.+.+.+..-..+.+.+ .|+.. ..+. .....|+-||++|+|||+..
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3567888887554444444433 33321 1222 23457899999999999876
No 95
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=67.40 E-value=1.9 Score=47.56 Aligned_cols=42 Identities=38% Similarity=0.675 Sum_probs=26.8
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 189 tFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
.|+.+++ |..+.+.+...|. .|.-..++-||+.|+|||+++.
T Consensus 23 ~~~~~~g----~~~~~~~L~~~i~---~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 23 TLDEVYG----QNEVITTVRKFVD---EGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SGGGCCS----CHHHHHHHHHHHH---TTCCCCEEEECSSSSSHHHHHH
T ss_pred cHHHhcC----cHHHHHHHHHHHh---cCCCceEEEECCCCCCHHHHHH
Confidence 3556654 5556555544443 3532236779999999999983
No 96
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=66.72 E-value=1.1e+02 Score=30.56 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 564 EQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 564 eeE~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
..++...+.+.+.+.+.|...|-.|+++|
T Consensus 100 LrELEADLKEKDsMVe~LT~TiG~LrKEL 128 (167)
T 4gkw_A 100 LGELEADLKEKDSMVESLTETIGILRKEL 128 (167)
T ss_dssp THHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHhhhhHHHHHHHHHHHHHHHHH
Confidence 34455556667777777777777777655
No 97
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=65.78 E-value=17 Score=43.87 Aligned_cols=107 Identities=16% Similarity=0.274 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH---HhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 485 EREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKVSFTL---QSDLKSENYMLADKHKIEKEQNAQLRNQVAQLL 561 (1186)
Q Consensus 485 ~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~qk~~k~~~el---q~~L~se~~~L~ek~k~ekE~~~qL~~ql~qLl 561 (1186)
+++..+.++++|....+.+|....+....+.++.+........+ +.++..++..+........+...+|..++.+..
T Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~~~l~~~~~~~~ 418 (575)
T 2i1j_A 339 EYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQ 418 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33444445555555555555444443333333332222221111 122222333333222222333333444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 562 QLEQEQKMQIQQRDSTIKTLQAKINSIESQ 591 (1186)
Q Consensus 562 ~~eeE~k~qiqq~e~eIe~LqqeIeeLe~q 591 (1186)
.....+..+.+.++.+-..|+.++...+..
T Consensus 419 ~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~ 448 (575)
T 2i1j_A 419 EEVSRIQQEVELKDSETRRLQEEVEDARRK 448 (575)
T ss_dssp -----------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555566666666666655543
No 98
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=65.59 E-value=2.3 Score=44.21 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=20.0
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+..+++|.| ++..++||||||.+.
T Consensus 58 ~~i~~~~~~~~--~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 58 QAIPVMLHGRE--LLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 34556678888 577889999999874
No 99
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=65.48 E-value=1.6 Score=45.63 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=20.2
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+..++.|.| ++..++||||||.+.
T Consensus 59 ~ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 59 RAIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 44556678887 567899999999774
No 100
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=65.36 E-value=75 Score=31.11 Aligned_cols=10 Identities=20% Similarity=0.255 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 001022 574 RDSTIKTLQA 583 (1186)
Q Consensus 574 ~e~eIe~Lqq 583 (1186)
++.+|..|+.
T Consensus 117 Ld~EIatYRk 126 (131)
T 3tnu_A 117 LEQEIATYRR 126 (131)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3445555543
No 101
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=64.89 E-value=49 Score=38.62 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 485 EREKEIQDLKQEILGLRQALKEAND 509 (1186)
Q Consensus 485 ~le~eI~eLkeEI~~Lr~~L~~~~~ 509 (1186)
..+..|++|+..+.++.+.-..+.+
T Consensus 35 ~V~~~l~~L~~~l~~isn~Ts~~~~ 59 (411)
T 3ghg_C 35 KVDKDLQSLEDILHQVENKTSEVKQ 59 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhhhhHHHH
Confidence 4455666666666666555444433
No 102
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=64.78 E-value=1.9 Score=48.23 Aligned_cols=50 Identities=22% Similarity=0.360 Sum_probs=28.5
Q ss_pred eeecceeeCCCCChhhHHhch-HHhHhhh----cCCccEEEEeeccCCCCccccc
Q 001022 187 DFEFDRVYGPHVGQAELFSDV-QPFVQSA----LDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 187 ~FtFD~VF~p~asQeeVFeeV-~PLV~sv----LdGyNvcIfAYGQTGSGKTyTM 236 (1186)
...||.+.+.+..-..+.+.+ .|+...- +.+....|+-||++|+|||++.
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 356777766433333333332 2222111 2244567889999999999877
No 103
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.57 E-value=11 Score=44.13 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=29.8
Q ss_pred eeecceeeCCCCChhhHHhch-HHhHhh-hcC--C--ccEEEEeeccCCCCccccc
Q 001022 187 DFEFDRVYGPHVGQAELFSDV-QPFVQS-ALD--G--YNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 187 ~FtFD~VF~p~asQeeVFeeV-~PLV~s-vLd--G--yNvcIfAYGQTGSGKTyTM 236 (1186)
..+||.|-+-+..-+++.+.| -|+-.. .+. | ..-.|+-||+.|+|||++.
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 456777776554444444443 343221 222 2 2346889999999999875
No 104
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=64.39 E-value=78 Score=29.63 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 626 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 626 ~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
+......++.+++.-+..++.+.++++++...+.++
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555555555555
No 105
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=64.16 E-value=92 Score=35.96 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 550 NAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 550 ~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
..+|+.++..|..+...+-..|..++.-|+.+..+|+.||..+
T Consensus 115 s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 115 NEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443333333344444444444444444444433
No 106
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=63.55 E-value=1.1e+02 Score=29.65 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001022 485 EREKEIQDLKQEILGLRQALKEA 507 (1186)
Q Consensus 485 ~le~eI~eLkeEI~~Lr~~L~~~ 507 (1186)
++......|..|++.++..+...
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~ 29 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQ 29 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666665555443
No 107
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=63.50 E-value=2.7 Score=48.75 Aligned_cols=29 Identities=24% Similarity=0.223 Sum_probs=22.7
Q ss_pred HhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
+++..++......|.-.|+||||||.||.
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 35555555666789999999999999984
No 108
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=63.46 E-value=1.7e+02 Score=34.59 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001022 570 QIQQRDSTIKTLQAKINSIE 589 (1186)
Q Consensus 570 qiqq~e~eIe~LqqeIeeLe 589 (1186)
.+.+...+|+.|+.++..+.
T Consensus 176 ~~~~l~~ki~~l~~~~~~~~ 195 (464)
T 1m1j_B 176 VIDSLHKKIQKLENAIATQT 195 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666554
No 109
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=63.19 E-value=2.7 Score=43.39 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=18.7
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.+..+++|.|+ +..++||||||.+.
T Consensus 55 ~i~~~~~~~~~--li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 55 TIGLALQGKDV--LGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEEeCCCCcHHHHH
Confidence 34556788874 56689999999874
No 110
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=63.18 E-value=1.4e+02 Score=30.55 Aligned_cols=33 Identities=15% Similarity=0.337 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 560 LLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 560 Ll~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
+..+...++.++.+.+..+..++..+..|+.-+
T Consensus 113 ~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 113 IEILNKRLTEQLREKDTLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556677777788888888888887544
No 111
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=62.42 E-value=2.7 Score=40.65 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=20.4
Q ss_pred HhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 204 FSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 204 FeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
...+...+..+..+ +..|+-||.+|+|||+...
T Consensus 13 ~~~l~~~~~~~~~~-~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 13 IQEMNREVEAAAKR-TSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp HHHHHHHHHHHHTC-SSCEEEEEETTCCHHHHHG
T ss_pred HHHHHHHHHHHhCC-CCcEEEECCCCccHHHHHH
Confidence 33444444443332 2346779999999998864
No 112
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=62.28 E-value=1.4e+02 Score=34.33 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 570 QIQQRDSTIKTLQAKINSIESQRN 593 (1186)
Q Consensus 570 qiqq~e~eIe~LqqeIeeLe~qLk 593 (1186)
.+++++.+|..|.++|++++.+.+
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555444443
No 113
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=61.89 E-value=3 Score=42.87 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=20.1
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+..+++|.|+ +..++||||||.+.
T Consensus 49 ~~i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 49 QAWPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 445667789886 56789999999874
No 114
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=61.76 E-value=69 Score=29.57 Aligned_cols=37 Identities=16% Similarity=0.368 Sum_probs=20.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 625 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 625 d~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
+..+....|++..+.-+..|+.+.++.+.+..++.+.
T Consensus 62 ~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~l 98 (107)
T 1fxk_A 62 AKDELTEELQEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555566666655555555554443
No 115
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=61.65 E-value=4.1 Score=45.18 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=23.2
Q ss_pred HhchHHhH-hhhcCC---ccEEEEe--eccCCCCccccc
Q 001022 204 FSDVQPFV-QSALDG---YNVSIFA--YGQTHSGKTHTM 236 (1186)
Q Consensus 204 FeeV~PLV-~svLdG---yNvcIfA--YGQTGSGKTyTM 236 (1186)
.+.+...+ ..+..| ...+++- ||+.|+|||+.+
T Consensus 31 l~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 31 AEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 33344455 555555 5567888 999999999987
No 116
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=61.36 E-value=2.9 Score=42.57 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=19.1
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+..+++|.| ++..++||||||.+.
T Consensus 43 ~~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 43 ECIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCchhhhh
Confidence 34555677887 456679999999865
No 117
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=61.20 E-value=1.7 Score=43.58 Aligned_cols=23 Identities=48% Similarity=0.510 Sum_probs=17.5
Q ss_pred hhhcCCccEEEEeeccCCCCccccc
Q 001022 212 QSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 212 ~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+++|.| ++..++||||||.+.
T Consensus 43 ~~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 43 QPALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCCHHHHH
Confidence 34456776 456899999999987
No 118
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=60.85 E-value=1.2e+02 Score=34.92 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 557 VAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1186)
Q Consensus 557 l~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe 589 (1186)
+.|-+.+.+|++.++..++.+++.++.++++++
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 438 KAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333334555666666667777777777777665
No 119
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=60.78 E-value=1.1e+02 Score=28.76 Aligned_cols=47 Identities=11% Similarity=0.184 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 543 HKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1186)
Q Consensus 543 ~k~ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe 589 (1186)
++.....+.....++........+-.......+..+..|..+|+-|+
T Consensus 53 ~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 53 LRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33334444444444444443333333444556667777777776665
No 120
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=60.73 E-value=74 Score=30.96 Aligned_cols=81 Identities=7% Similarity=0.262 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----------HHHHHhcChhHHHH
Q 001022 64 KVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLDQVA-----------LEAEARISPLINEK 132 (1186)
Q Consensus 64 ~v~~Lk~~l~~~~~~~~~Lr~e~~d~q~~~~~~l~~v~~~l~~L~~~~~~l~~~~-----------~E~e~r~~~~~~eR 132 (1186)
.+.+|...+..++.+...++.+..++.+++..+-+.-...+..|.+++..-++.+ .++..++..+..-|
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~R 86 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSR 86 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444445555554444444443444444444333322222 33444555666678
Q ss_pred hhhhhhhccCCC
Q 001022 133 KRLFNDLLTAKG 144 (1186)
Q Consensus 133 kkLhN~l~elkG 144 (1186)
+++..+|..+.+
T Consensus 87 e~V~~eL~rLQ~ 98 (112)
T 1x79_B 87 EQVSEELVRLQK 98 (112)
T ss_dssp HHHHTC------
T ss_pred HHHHHHHHHHHh
Confidence 888877766543
No 121
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=60.69 E-value=2.9 Score=45.63 Aligned_cols=44 Identities=25% Similarity=0.329 Sum_probs=29.9
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhc--CCccEEEEeeccCCCCccccc
Q 001022 189 EFDRVYGPHVGQAELFSDVQPFVQSAL--DGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 189 tFD~VF~p~asQeeVFeeV~PLV~svL--dGyNvcIfAYGQTGSGKTyTM 236 (1186)
+|+.+.+ ++.+...+..++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG----~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIG----QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCC----hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 4666554 5566666655555553 344456899999999999876
No 122
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=60.52 E-value=49 Score=33.01 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 568 KMQIQQRDSTIKTLQAKINSIESQRN 593 (1186)
Q Consensus 568 k~qiqq~e~eIe~LqqeIeeLe~qLk 593 (1186)
+.++.++..++..|+.++.+|+.+++
T Consensus 109 ~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 109 AKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555556666666665554
No 123
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.50 E-value=1.3e+02 Score=29.32 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001022 483 LYEREKEIQDLKQEILGLR 501 (1186)
Q Consensus 483 l~~le~eI~eLkeEI~~Lr 501 (1186)
+.++...|+.|+.|+..++
T Consensus 38 i~elrr~iq~L~~el~~l~ 56 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVK 56 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443
No 124
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=59.98 E-value=54 Score=31.44 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=44.1
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 530 SDLKSENYMLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1186)
Q Consensus 530 ~~L~se~~~L~ek~k~ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLk 593 (1186)
..|..+...+.=.+..++..+.++...+.++.....+..-.+......+..|+.++..++.+++
T Consensus 19 AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 19 AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445566677777777777777666566566677777788889999998888885
No 125
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=59.96 E-value=2.8 Score=47.61 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=19.8
Q ss_pred HhhhcCCccEEEEeeccCCCCcccccc
Q 001022 211 VQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 211 V~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
+.+++.-....|.-.|+||||||.||.
T Consensus 115 l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 115 FKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 334443444588889999999999983
No 126
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=59.83 E-value=3.4 Score=43.22 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=19.4
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+..+++|.|+ +..++||||||.+.
T Consensus 52 ~~i~~i~~~~~~--l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 52 NAIPAILEHRDI--MACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 345566788884 55679999999875
No 127
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=59.25 E-value=2.8 Score=46.38 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=29.4
Q ss_pred eecceeeCCCCChhhHHhch-HHhHh-hhcCCc---cEEEEeeccCCCCccccc
Q 001022 188 FEFDRVYGPHVGQAELFSDV-QPFVQ-SALDGY---NVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 188 FtFD~VF~p~asQeeVFeeV-~PLV~-svLdGy---NvcIfAYGQTGSGKTyTM 236 (1186)
.+||.|.+.+..-+.+.+.| .|+-. .++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 46788777554444444333 23321 233332 246888999999999886
No 128
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=58.62 E-value=2.3 Score=45.27 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=19.6
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+..++.|.| ++..++||||||.+.
T Consensus 83 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 83 KSIRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHHHhCCCc--EEEEccCCCCchHHH
Confidence 34555667877 577899999999874
No 129
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=58.45 E-value=4.7 Score=43.15 Aligned_cols=40 Identities=23% Similarity=0.429 Sum_probs=26.3
Q ss_pred cceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 190 FDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 190 FD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
|+.+.+ |+++.+.+..++.. |....++-||++|+|||++.
T Consensus 24 ~~~~~g----~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 24 LDDIVG----QEHIVKRLKHYVKT---GSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp TTTCCS----CHHHHHHHHHHHHH---TCCCEEEEESCTTSSHHHHH
T ss_pred HHHhhC----CHHHHHHHHHHHHc---CCCCeEEEECcCCCCHHHHH
Confidence 455443 56666555544443 44334888999999999987
No 130
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=58.09 E-value=4.2 Score=40.52 Aligned_cols=17 Identities=24% Similarity=0.217 Sum_probs=15.0
Q ss_pred EEEEeeccCCCCccccc
Q 001022 220 VSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 220 vcIfAYGQTGSGKTyTM 236 (1186)
..++-||++|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 37889999999999876
No 131
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=57.20 E-value=4.1 Score=45.05 Aligned_cols=26 Identities=31% Similarity=0.569 Sum_probs=20.9
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+..++.|.| ++..++||||||.+.
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 45667788988 577899999999874
No 132
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=56.94 E-value=4.1 Score=42.13 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=18.7
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.+..+++|.|+ +..++||||||.+.
T Consensus 54 ~i~~~~~~~~~--l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 54 AIPLGRCGLDL--IVQAKSGTGKTCVF 78 (230)
T ss_dssp HHHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCCcHHHHH
Confidence 44556788885 55679999999873
No 133
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=56.92 E-value=3.6 Score=48.03 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=26.2
Q ss_pred ChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 199 GQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 199 sQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.|+.+......+...+-.|.-..|+-||++|+|||+..
T Consensus 30 Gq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 30 GQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp SCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 46677744344444444455568899999999999876
No 134
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=56.38 E-value=1.4e+02 Score=28.42 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 479 ARKELYEREKEIQDLKQEILGLRQAL 504 (1186)
Q Consensus 479 ~~~el~~le~eI~eLkeEI~~Lr~~L 504 (1186)
++.++..++.+......|+..|...+
T Consensus 10 lre~l~~le~~~~~~~~e~~~L~~~l 35 (97)
T 2eqb_B 10 LKEDYNTLKRELSDRDDEVKRLREDI 35 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33344444444444444444444443
No 135
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=56.25 E-value=76 Score=30.01 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=49.7
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001022 48 SALPHSSEISKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQ--------EYSNAKIDRVTRYLGVLADKTRKLDQVAL 119 (1186)
Q Consensus 48 ~~~~~~~~~~k~~l~~~v~~Lk~~l~~~~~~~~~Lr~e~~d~q--------~~~~~~l~~v~~~l~~L~~~~~~l~~~~~ 119 (1186)
|.+|+ |+.|+.|.++|..|..++.....+...|..-..-+. .....++..+...+..|.....++...+.
T Consensus 9 s~LPp--eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~ 86 (98)
T 2ke4_A 9 SHLPP--EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLA 86 (98)
T ss_dssp SSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554 688999999999999999987766544443222111 12344566677777777777777777777
Q ss_pred HHHH
Q 001022 120 EAEA 123 (1186)
Q Consensus 120 E~e~ 123 (1186)
|.+.
T Consensus 87 e~e~ 90 (98)
T 2ke4_A 87 EAES 90 (98)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7654
No 136
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=56.12 E-value=3.7 Score=46.35 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=30.0
Q ss_pred ceeecceeeCCCCChhhHHhch-HHhHh-hhcC---CccEEEEeeccCCCCccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDV-QPFVQ-SALD---GYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV-~PLV~-svLd---GyNvcIfAYGQTGSGKTyTM 236 (1186)
..+.||.+.+.+..-+.+.+.+ .|+.. .++. ....+|+-||++|+|||+..
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 4567888887444333333332 22221 1112 22357899999999999876
No 137
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=56.07 E-value=4.2 Score=42.93 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=19.2
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+..+++|.|+ +..++||||||.+.
T Consensus 72 ~~i~~i~~~~~~--lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 72 EAIPLALQGRDI--IGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHhCCCCE--EEEcCCCCCchhHh
Confidence 345566788875 45679999999874
No 138
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=56.06 E-value=4.2 Score=43.82 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=28.1
Q ss_pred eecceeeCCCCChhhHHhchHHhHhhhc--CCccEEEEeeccCCCCccccc
Q 001022 188 FEFDRVYGPHVGQAELFSDVQPFVQSAL--DGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 188 FtFD~VF~p~asQeeVFeeV~PLV~svL--dGyNvcIfAYGQTGSGKTyTM 236 (1186)
.+|+.+.+. ..+...+..++..+. .+....|+-||++|+|||+..
T Consensus 9 ~~~~~~ig~----~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 9 KTLDEYIGQ----ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CSTTTCCSC----HHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred ccHHHhhCH----HHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 356666553 444444444444433 234456788999999999876
No 139
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=55.68 E-value=4 Score=42.60 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=18.8
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.++..+..|.+ ++..|+||||||..+
T Consensus 68 ~~i~~i~~g~~--~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 68 EILEAISQNSV--VIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSHHHHH
T ss_pred HHHHHHhcCCE--EEEEeCCCCCcHHhH
Confidence 44555566765 567899999999765
No 140
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=55.43 E-value=3.8 Score=42.69 Aligned_cols=24 Identities=38% Similarity=0.419 Sum_probs=17.6
Q ss_pred HhhhcCCccEEEEeeccCCCCccccc
Q 001022 211 VQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 211 V~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
+..+++|.|+. ..++||||||.+.
T Consensus 60 i~~~~~g~~~l--~~apTGsGKT~~~ 83 (242)
T 3fe2_A 60 WPVALSGLDMV--GVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHTCCEE--EEECTTSCHHHHH
T ss_pred HHHHhCCCCEE--EECCCcCHHHHHH
Confidence 44556788754 5569999999874
No 141
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=55.24 E-value=3.8 Score=44.97 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=28.9
Q ss_pred eeecceeeCCCCChhhHHhch-HHhHh-hhcCCc---cEEEEeeccCCCCccccc
Q 001022 187 DFEFDRVYGPHVGQAELFSDV-QPFVQ-SALDGY---NVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 187 ~FtFD~VF~p~asQeeVFeeV-~PLV~-svLdGy---NvcIfAYGQTGSGKTyTM 236 (1186)
..+|+.|.+.+..-+.+.+.+ .|+.. ..+.+. ...|+-||++|+|||+..
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 356788777444333333333 23221 222221 346889999999999876
No 142
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=55.01 E-value=4 Score=44.67 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=19.8
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+..++.|.+-.++++++||||||.+.
T Consensus 121 ~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 121 NALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 3455667773334678899999999874
No 143
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=54.62 E-value=3.2 Score=44.23 Aligned_cols=41 Identities=27% Similarity=0.403 Sum_probs=25.4
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 189 tFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.|+.+.+ |+.+.+.+...+. .|....++-||++|+|||++.
T Consensus 15 ~~~~~~g----~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 15 TLDEVVG----QDEVIQRLKGYVE---RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SGGGSCS----CHHHHHHHHTTTT---TTCCCCEEEESSSSSSHHHHH
T ss_pred CHHHHhC----CHHHHHHHHHHHh---CCCCCeEEEECcCCcCHHHHH
Confidence 3555543 4455444433333 344334888999999999876
No 144
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=54.46 E-value=4.9 Score=42.98 Aligned_cols=38 Identities=32% Similarity=0.299 Sum_probs=25.1
Q ss_pred ChhhHHhchHHhHhhhcCC------ccEEEEeeccCCCCccccc
Q 001022 199 GQAELFSDVQPFVQSALDG------YNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 199 sQeeVFeeV~PLV~svLdG------yNvcIfAYGQTGSGKTyTM 236 (1186)
.|..+.+.+...+.....| -...|+-||++|+|||++.
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHH
Confidence 3556665554444444322 1367899999999999876
No 145
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=54.29 E-value=4.5 Score=43.73 Aligned_cols=20 Identities=35% Similarity=0.338 Sum_probs=16.4
Q ss_pred ccEEEEeeccCCCCcccccc
Q 001022 218 YNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 218 yNvcIfAYGQTGSGKTyTM~ 237 (1186)
....+.-.|+||||||.++.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHH
Confidence 34567789999999999983
No 146
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=53.82 E-value=5.6 Score=43.16 Aligned_cols=41 Identities=17% Similarity=0.075 Sum_probs=26.1
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhcCCc-cEEEEeeccCCCCccccc
Q 001022 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGY-NVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 189 tFD~VF~p~asQeeVFeeV~PLV~svLdGy-NvcIfAYGQTGSGKTyTM 236 (1186)
+||.+.+ |+.+...+...+. .|. ...++-||++|+|||+++
T Consensus 24 ~~~~ivg----~~~~~~~l~~~l~---~~~~~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 24 TIDECIL----PAFDKETFKSITS---KGKIPHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp STTTSCC----CHHHHHHHHHHHH---TTCCCSEEEECSSTTSSHHHHH
T ss_pred CHHHHhC----cHHHHHHHHHHHH---cCCCCeEEEeeCcCCCCHHHHH
Confidence 3555543 4555554544444 333 356788999999999987
No 147
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=53.41 E-value=4.8 Score=44.56 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=26.3
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhc-CC-ccEEEEeeccCCCCccccc
Q 001022 189 EFDRVYGPHVGQAELFSDVQPFVQSAL-DG-YNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 189 tFD~VF~p~asQeeVFeeV~PLV~svL-dG-yNvcIfAYGQTGSGKTyTM 236 (1186)
+|+.+|+ |..+.+.+.-.|.... .| ..-.++-||++|+|||+.+
T Consensus 23 ~l~~~~g----~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 23 SLDEFIG----QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHH
T ss_pred cHHHccC----cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHH
Confidence 5666665 4455555544443321 11 1123566999999999987
No 148
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=53.33 E-value=1.4e+02 Score=28.99 Aligned_cols=10 Identities=20% Similarity=0.491 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 001022 580 TLQAKINSIE 589 (1186)
Q Consensus 580 ~LqqeIeeLe 589 (1186)
.|+..++.|.
T Consensus 94 ~L~~ql~~Lq 103 (110)
T 2v4h_A 94 YLQEQLEQLQ 103 (110)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 149
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=52.98 E-value=8.3 Score=42.07 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=23.4
Q ss_pred hhHHhchHHhHhhhcCC-----ccEEEEeeccCCCCccccc
Q 001022 201 AELFSDVQPFVQSALDG-----YNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 201 eeVFeeV~PLV~svLdG-----yNvcIfAYGQTGSGKTyTM 236 (1186)
+++...+..++..++.| ....|+..|++|||||+..
T Consensus 10 ~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 34444344445555443 2467889999999999865
No 150
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=52.59 E-value=1.4e+02 Score=27.46 Aligned_cols=14 Identities=36% Similarity=0.461 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 001022 546 EKEQNAQLRNQVAQ 559 (1186)
Q Consensus 546 ekE~~~qL~~ql~q 559 (1186)
+++++..+.....+
T Consensus 32 LKekN~~L~~e~~e 45 (81)
T 2jee_A 32 LKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 151
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=52.45 E-value=98 Score=30.31 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001022 486 REKEIQDLKQEILGLRQALKEA 507 (1186)
Q Consensus 486 le~eI~eLkeEI~~Lr~~L~~~ 507 (1186)
.+..|..|+.|+..|+..++..
T Consensus 13 rD~~Ie~Lkreie~lk~ele~l 34 (120)
T 3i00_A 13 KDHLIERLYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777766544
No 152
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=52.42 E-value=36 Score=30.95 Aligned_cols=31 Identities=23% Similarity=0.167 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001022 632 KLEEELKKRDALIERLHEENEKLFDRLTEKA 662 (1186)
Q Consensus 632 KLEEeLkkrd~lIe~l~ee~ekl~~rlt~k~ 662 (1186)
.|.+.+.+++..|.++..++..|.+|+.+..
T Consensus 32 eLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 32 ELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666667777788888888888888877764
No 153
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=51.90 E-value=3.1 Score=42.51 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=18.2
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.+..+++|.|+ +..++||||||.+.
T Consensus 34 ~i~~~~~~~~~--lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 34 IIPGALRGESM--VGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHHHTCCE--EEECCSSHHHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 34455678775 56789999999873
No 154
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=51.81 E-value=5.1 Score=44.48 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=19.7
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+..+++|.| ++..++||||||.+.
T Consensus 66 ~ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 66 RAIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCCchHHH
Confidence 34556678888 566789999999764
No 155
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=51.52 E-value=3.6 Score=44.72 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=18.7
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
+...+..|....++-||++|+|||+++
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 333334453333888999999999987
No 156
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=51.43 E-value=4.7 Score=44.09 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=25.1
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 189 tFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
+||.+.+ |+.+.+.+...+...-.+.+ ++-||++|+|||+++
T Consensus 12 ~~~~~vg----~~~~~~~l~~~~~~~~~~~~--~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 12 SLNALSH----NEELTNFLKSLSDQPRDLPH--LLLYGPNGTGKKTRC 53 (354)
T ss_dssp SGGGCCS----CHHHHHHHHTTTTCTTCCCC--EEEECSTTSSHHHHH
T ss_pred CHHHhcC----CHHHHHHHHHHHhhCCCCCe--EEEECCCCCCHHHHH
Confidence 4566553 55555544433311112334 778999999999987
No 157
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=51.11 E-value=4.7 Score=45.18 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=28.5
Q ss_pred eeecceeeCCCCChhhHHhch-HHhHh-hhcCC---ccEEEEeeccCCCCccccc
Q 001022 187 DFEFDRVYGPHVGQAELFSDV-QPFVQ-SALDG---YNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 187 ~FtFD~VF~p~asQeeVFeeV-~PLV~-svLdG---yNvcIfAYGQTGSGKTyTM 236 (1186)
..+|+.|.+.+..-..+.+.+ .|+-. .++.+ ....|+-||++|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 456788776544433444333 23211 22222 1235788999999999876
No 158
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=51.11 E-value=5.7 Score=38.39 Aligned_cols=19 Identities=16% Similarity=0.545 Sum_probs=15.5
Q ss_pred ccEEEEeeccCCCCccccc
Q 001022 218 YNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 218 yNvcIfAYGQTGSGKTyTM 236 (1186)
.+..|+-||.+|+|||+..
T Consensus 23 ~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp CCSCEEEESSTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 4455788999999999876
No 159
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=50.99 E-value=5.5 Score=45.70 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=20.0
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHT 235 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyT 235 (1186)
.+..++.|.+..++..|+||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 44555667556678999999999977
No 160
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=50.52 E-value=6.2 Score=43.40 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=23.7
Q ss_pred HHhHhhhcCCc---cEEEEeeccCCCCccccc
Q 001022 208 QPFVQSALDGY---NVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 208 ~PLV~svLdGy---NvcIfAYGQTGSGKTyTM 236 (1186)
...+..+++|. .-||+-||+.|+|||+..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 45577788876 458999999999999876
No 161
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=50.46 E-value=2e+02 Score=28.62 Aligned_cols=40 Identities=28% Similarity=0.351 Sum_probs=26.8
Q ss_pred chhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhcc
Q 001022 625 DSSAVSKKLEEELKKRDALI---ERLHEENEKLFDRLTEKASS 664 (1186)
Q Consensus 625 d~~~~~kKLEEeLkkrd~lI---e~l~ee~ekl~~rlt~k~~~ 664 (1186)
.|.-+.+.||.+--|-++.. +++.-|||.+.+|+.---++
T Consensus 120 TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR~Q 162 (167)
T 4gkw_A 120 TIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYRAQ 162 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHh
Confidence 35667778876655555544 77888899888887654333
No 162
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=50.23 E-value=1.6e+02 Score=28.46 Aligned_cols=10 Identities=10% Similarity=0.385 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q 001022 581 LQAKINSIES 590 (1186)
Q Consensus 581 LqqeIeeLe~ 590 (1186)
+++++.+|..
T Consensus 106 heeEl~eLq~ 115 (119)
T 3ol1_A 106 HEEEIQELQA 115 (119)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHH
Confidence 4445555543
No 163
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=49.82 E-value=1.6e+02 Score=27.06 Aligned_cols=45 Identities=18% Similarity=0.260 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 546 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIES 590 (1186)
Q Consensus 546 ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~ 590 (1186)
++....+|..-...+.....+++.+..+.+..|+.|+.+.++|+.
T Consensus 30 LrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 30 LKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444555566667777777777777764
No 164
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=49.60 E-value=1.1e+02 Score=37.23 Aligned_cols=22 Identities=23% Similarity=0.230 Sum_probs=17.9
Q ss_pred cCCccEEEEeeccCCCCccccc
Q 001022 215 LDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 215 LdGyNvcIfAYGQTGSGKTyTM 236 (1186)
+++....|...|.+|+|||+.|
T Consensus 34 i~~~~~~VaivG~pnvGKStLi 55 (592)
T 1f5n_A 34 ITQPMVVVAIVGLYRTGKSYLM 55 (592)
T ss_dssp CCSBEEEEEEEEBTTSSHHHHH
T ss_pred ccCCCcEEEEECCCCCCHHHHH
Confidence 3666677889999999999765
No 165
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=49.45 E-value=19 Score=42.79 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=16.6
Q ss_pred CCccEEEEeeccCCCCcccccc
Q 001022 216 DGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 216 dGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
.|.+ |.-.|+||||||.||.
T Consensus 259 ~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 259 HKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp TTCC--EEEEESTTSSHHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHHH
Confidence 6776 5678999999999873
No 166
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=49.21 E-value=7.8 Score=42.39 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=23.7
Q ss_pred ChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 199 GQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 199 sQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.|+.+.+.+...+.. ......++-||+.|+|||+++
T Consensus 20 g~~~~~~~L~~~l~~--~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 20 GQEHVLTALANGLSL--GRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp SCHHHHHHHHHHHHH--TCCCSEEEEESCTTSSHHHHH
T ss_pred CcHHHHHHHHHHHHh--CCCCeEEEEECCCCCCHHHHH
Confidence 355565555444433 223346789999999999887
No 167
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=49.11 E-value=6.4 Score=41.51 Aligned_cols=25 Identities=28% Similarity=0.085 Sum_probs=18.2
Q ss_pred HhhhcCCccEEEEeeccCCCCcccccc
Q 001022 211 VQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 211 V~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
+..++++.+ ++.+|+||+|||++..
T Consensus 102 i~~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 102 LERWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHHHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCCCHHHHHH
Confidence 344566666 5667899999999863
No 168
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=49.00 E-value=1.7e+02 Score=27.33 Aligned_cols=43 Identities=9% Similarity=0.254 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1186)
Q Consensus 547 kE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe 589 (1186)
.........++........+......+.+..+..|..+|+-|+
T Consensus 57 E~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 57 EDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333334444443333333333344445566666666665543
No 169
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=48.91 E-value=5.8 Score=45.09 Aligned_cols=28 Identities=29% Similarity=0.188 Sum_probs=20.1
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
.+..+.-.....|.-.|+||||||.++.
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHH
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHH
Confidence 3444333445578889999999999983
No 170
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=48.76 E-value=6.2 Score=42.07 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=17.7
Q ss_pred HhhhcCCccEEEEeeccCCCCccccc
Q 001022 211 VQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 211 V~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
+..+++|.| ++..++||||||.+.
T Consensus 25 i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 25 IPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 445567877 456689999999865
No 171
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=48.28 E-value=1e+02 Score=30.68 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 001022 547 KEQNAQLRNQVAQL 560 (1186)
Q Consensus 547 kE~~~qL~~ql~qL 560 (1186)
++++..++.++..+
T Consensus 116 ~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 116 KSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 172
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=48.06 E-value=5.6 Score=45.94 Aligned_cols=26 Identities=12% Similarity=0.103 Sum_probs=20.3
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
++..++.|.+. ++..|+||||||...
T Consensus 11 ~i~~~l~~~~~-~lv~a~TGsGKT~~~ 36 (451)
T 2jlq_A 11 VDEDIFRKKRL-TIMDLHPGAGKTKRI 36 (451)
T ss_dssp CCGGGGSTTCE-EEECCCTTSSCCTTH
T ss_pred HHHHHHhcCCe-EEEECCCCCCHhhHH
Confidence 45667888775 457799999999874
No 173
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=47.98 E-value=5.6 Score=43.80 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=20.2
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+..++.|.+..++..++||||||.+.
T Consensus 54 ~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 54 NALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 3456667774445677889999999874
No 174
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=47.15 E-value=5.7 Score=43.27 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=18.8
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.+..++.|.+..++..++||||||.+.
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 345556673334577889999999864
No 175
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=46.71 E-value=6.9 Score=46.37 Aligned_cols=27 Identities=37% Similarity=0.316 Sum_probs=18.7
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
+++.+..|.+.++++ ++||||||.++.
T Consensus 190 ~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 190 AVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 344444576655554 899999999974
No 176
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=46.58 E-value=53 Score=29.66 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 564 EQEQKMQIQQRDSTIKTLQAKINSIE 589 (1186)
Q Consensus 564 eeE~k~qiqq~e~eIe~LqqeIeeLe 589 (1186)
..++..++++++..|..|+.++.+++
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455556666666666655554
No 177
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=46.36 E-value=5.1 Score=46.40 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=28.4
Q ss_pred ceeecceeeCCCCChhhHHhch-HHhHh-hhcCC---ccEEEEeeccCCCCccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDV-QPFVQ-SALDG---YNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV-~PLV~-svLdG---yNvcIfAYGQTGSGKTyTM 236 (1186)
...+|+.|.+.+..-..+.+.+ .|+-. .++.| ....|+-||++|+|||+..
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 3467888876433222222222 22211 22332 2246888999999999887
No 178
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=46.34 E-value=7 Score=43.32 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=19.2
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.+..++.|.|+ +..++||||||.+.
T Consensus 45 ~i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 45 AIPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHccCCCE--EEEcCCCCHHHHHH
Confidence 45556788885 56789999999865
No 179
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=46.29 E-value=1.1e+02 Score=35.58 Aligned_cols=22 Identities=18% Similarity=0.003 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001022 484 YEREKEIQDLKQEILGLRQALK 505 (1186)
Q Consensus 484 ~~le~eI~eLkeEI~~Lr~~L~ 505 (1186)
+..-.++..+..++..|...++
T Consensus 44 E~~l~elsn~ts~v~~Lvk~iq 65 (409)
T 1m1j_C 44 EGLLQQATNSTGSIEYLIQHIK 65 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445544444443
No 180
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=46.05 E-value=79 Score=31.87 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 629 VSKKLEEELKKRDALIERLHEENEKL 654 (1186)
Q Consensus 629 ~~kKLEEeLkkrd~lIe~l~ee~ekl 654 (1186)
..+.|+++|..-...++.++..-++.
T Consensus 102 k~~eLEeeL~~~~~nlKsLE~~eeka 127 (147)
T 2b9c_A 102 KCAELEEELKTVTNNLKSLEDKVEEL 127 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHH
Confidence 33455555555555555444443333
No 181
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=45.48 E-value=6.3 Score=43.51 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=19.0
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+..++.|.+ ++..++||||||.+.
T Consensus 50 ~~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 50 EAIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 34455667877 566789999999764
No 182
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=44.94 E-value=5.7 Score=42.23 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=15.2
Q ss_pred cEEEEeeccCCCCccccc
Q 001022 219 NVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 219 NvcIfAYGQTGSGKTyTM 236 (1186)
...|+-||++|+|||++.
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346788999999999987
No 183
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=44.85 E-value=2.3e+02 Score=27.61 Aligned_cols=10 Identities=20% Similarity=0.381 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 001022 580 TLQAKINSIE 589 (1186)
Q Consensus 580 ~LqqeIeeLe 589 (1186)
.|..+|.-.+
T Consensus 116 ~Ld~EIatYR 125 (131)
T 3tnu_A 116 RLEQEIATYR 125 (131)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444544444
No 184
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=44.67 E-value=1.4e+02 Score=28.64 Aligned_cols=58 Identities=17% Similarity=0.215 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001022 55 EISKQALSTKVQRLKDEIKFVKEDYLELRQEATDLQEYSNAKIDRVTRYLGVLADKTRKLDQ 116 (1186)
Q Consensus 55 ~~~k~~l~~~v~~Lk~~l~~~~~~~~~Lr~e~~d~q~~~~~~l~~v~~~l~~L~~~~~~l~~ 116 (1186)
.+.|.+|.=+|..||+.+..+...+.+++++..+.... +++..+....|+.....+..
T Consensus 22 DNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re----~e~~Kr~~~~L~~~~~~lk~ 79 (103)
T 4h22_A 22 DNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKE----FEREKHAHSILQFQFAEVKE 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999888888764321 34445555555555444443
No 185
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=44.51 E-value=10 Score=44.87 Aligned_cols=47 Identities=23% Similarity=0.303 Sum_probs=28.7
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhc-----C----CccEEEEeeccCCCCccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSAL-----D----GYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~PLV~svL-----d----GyNvcIfAYGQTGSGKTyTM 236 (1186)
..++|+.|.+.+ ++-..+..++..+- . .....|+-||++|+|||+..
T Consensus 11 ~~~~f~di~G~~----~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAE----EAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCH----HHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcH----HHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 456788887754 34444433333221 1 12234889999999999876
No 186
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=44.46 E-value=75 Score=29.75 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=32.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 001022 625 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEKA 662 (1186)
Q Consensus 625 d~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k~ 662 (1186)
+..+....|++..+.-+..|+.+.++.+.+..++.+..
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888999999999999999999999988888773
No 187
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=44.34 E-value=2.8e+02 Score=32.43 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001022 571 IQQRDSTIKTLQAKINSIE 589 (1186)
Q Consensus 571 iqq~e~eIe~LqqeIeeLe 589 (1186)
+...+..|+.|++.+..|+
T Consensus 114 ~~~~~~~i~~L~~~v~~l~ 132 (411)
T 3ghg_C 114 YNSNNQKIVNLKEKVAQLE 132 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555
No 188
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=44.27 E-value=1.2e+02 Score=29.08 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001022 567 QKMQIQQRDSTIKTLQAKINSIESQRNEALH 597 (1186)
Q Consensus 567 ~k~qiqq~e~eIe~LqqeIeeLe~qLke~l~ 597 (1186)
++.-++++......|+.+|.+|++++.....
T Consensus 73 NK~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 73 NKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999875443
No 189
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=44.24 E-value=4.6 Score=43.71 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=24.8
Q ss_pred eeecceeeCCCCChhhHHhch-HHh-----Hhhh-cCCccEEEEeeccCCCCccccc
Q 001022 187 DFEFDRVYGPHVGQAELFSDV-QPF-----VQSA-LDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 187 ~FtFD~VF~p~asQeeVFeeV-~PL-----V~sv-LdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+|+.|-+.+...+++.+.| .|+ +..+ +.-..+ |+-||+.|+|||+.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHH
Confidence 356777766555444454432 333 2222 111122 889999999999876
No 190
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=43.85 E-value=4.9e+02 Score=31.10 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 570 QIQQRDSTIKTLQAKINSIESQRNE 594 (1186)
Q Consensus 570 qiqq~e~eIe~LqqeIeeLe~qLke 594 (1186)
...+.+.+...|++++.+....+.+
T Consensus 81 ~~AeY~~kl~aYe~~~~~~~k~lae 105 (497)
T 3iox_A 81 DLADYPVKLKAYEDEQTSIKAALAE 105 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555543
No 191
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=43.57 E-value=8.5 Score=43.08 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=18.8
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.+..+++|.| ++..++||||||...
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~~ 53 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTFG 53 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHHH
Confidence 3455677876 568899999999843
No 192
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=43.43 E-value=32 Score=41.56 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=5.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001022 625 DSSAVSKKLEEELKKRDALIERLHEENEKLFDRLT 659 (1186)
Q Consensus 625 d~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt 659 (1186)
+......+|+++-+++++.-+.+++++....+.+.
T Consensus 416 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~ 450 (575)
T 2i1j_A 416 AKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQD 450 (575)
T ss_dssp --------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567777777777777777777776655443
No 193
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=43.39 E-value=1.8e+02 Score=33.83 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001022 570 QIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 570 qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
++..++..+..++.+|+.|+.++
T Consensus 106 ~i~~l~~~~~~~~~~i~~l~~~i 128 (409)
T 1m1j_C 106 TIQQLTDMHIMNSNKITQLKQKI 128 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444444444455555554444
No 194
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=43.01 E-value=8.1 Score=45.61 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=16.5
Q ss_pred CccEEEEeeccCCCCccccc
Q 001022 217 GYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 217 GyNvcIfAYGQTGSGKTyTM 236 (1186)
.....|+-||++|+|||+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHH
Confidence 34556889999999999876
No 195
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=42.87 E-value=5.6 Score=42.49 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=19.7
Q ss_pred HhhhcCC--ccEEEEeeccCCCCcccccc
Q 001022 211 VQSALDG--YNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 211 V~svLdG--yNvcIfAYGQTGSGKTyTM~ 237 (1186)
+..++.| +.-|++-||+.|+|||++..
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 3444445 33469999999999998864
No 196
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=42.77 E-value=5.4 Score=42.61 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=16.1
Q ss_pred hhcCCccEEEEeeccCCCCcccccc
Q 001022 213 SALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 213 svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
.++.|.++.| .++||||||.+..
T Consensus 124 ~~l~~~~~ll--~~~tGsGKT~~~~ 146 (282)
T 1rif_A 124 EGLVNRRRIL--NLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHSEEEE--CCCTTSCHHHHHH
T ss_pred HHHhcCCeEE--EcCCCCCcHHHHH
Confidence 3444555433 8999999998873
No 197
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=42.51 E-value=2.2e+02 Score=26.67 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 485 EREKEIQDLKQEILGLRQALKEANDQ 510 (1186)
Q Consensus 485 ~le~eI~eLkeEI~~Lr~~L~~~~~q 510 (1186)
.+..++..|+.+-..|...|......
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke 33 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKN 33 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555544433
No 198
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=42.47 E-value=37 Score=31.46 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 626 SSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 626 ~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
+..+.++++++|....+.|+++++++++...++++.
T Consensus 42 L~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 42 LAALKKHKENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677899999999999999999999998888765
No 199
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=42.45 E-value=74 Score=29.36 Aligned_cols=38 Identities=13% Similarity=0.092 Sum_probs=31.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001022 624 MDSSAVSKKLEEELKKRDALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 624 ~d~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~rlt~k 661 (1186)
..+......++.+++.-+..++.+.++++++...+.++
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888999999999999999999998888765
No 200
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=42.17 E-value=3e+02 Score=28.11 Aligned_cols=46 Identities=20% Similarity=0.123 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 548 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1186)
Q Consensus 548 E~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLk 593 (1186)
..+..|+..+..+..+..+++..+......++.+++++..|..+++
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n 113 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENN 113 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666777777777788888877777763
No 201
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=42.17 E-value=9.4 Score=41.78 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=19.4
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+..++.|.|+ +..++||||||.+.
T Consensus 37 ~~i~~~~~~~~~--lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 37 ECIPQAILGMDV--LCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHHTTTCCE--EEECSSCSSHHHHH
T ss_pred HHHHHHhcCCcE--EEECCCCCcHHHHH
Confidence 345666778874 55679999999875
No 202
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=41.67 E-value=16 Score=40.99 Aligned_cols=19 Identities=37% Similarity=0.342 Sum_probs=16.3
Q ss_pred ccEEEEeeccCCCCccccc
Q 001022 218 YNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 218 yNvcIfAYGQTGSGKTyTM 236 (1186)
....|.-.|++|||||.|+
T Consensus 128 ~g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SSEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4567888999999999988
No 203
>3m50_P N.plumbaginifolia H+-translocating ATPase mRNA; all helical, protein-protein complex, protein binding; HET: EBT; 2.60A {Nicotiana plumbaginifolia} PDB: 3m51_P* 4dx0_P*
Probab=40.96 E-value=9.6 Score=29.20 Aligned_cols=17 Identities=24% Similarity=0.604 Sum_probs=14.9
Q ss_pred hhhhccccccccccccc
Q 001022 876 VLRMRGIDQDTWRHQVT 892 (1186)
Q Consensus 876 ~~~~~~~~~~~~~~~~~ 892 (1186)
|-|++|+|.|+-+||-|
T Consensus 14 v~KLKglDi~~i~~~yT 30 (31)
T 3m50_P 14 VVKLKGLDIETIQQSYD 30 (31)
T ss_dssp HHHHTTCCSCCCCCCCC
T ss_pred HHHHhcCChhhhhhccc
Confidence 56899999999999876
No 204
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=40.91 E-value=8.7 Score=40.95 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=21.7
Q ss_pred hhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 200 QAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 200 QeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
|+.+.+.+...+. .|.-..++-||+.|+|||++.
T Consensus 26 ~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 26 NKETIDRLQQIAK---DGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp CTHHHHHHHHHHH---SCCCCCEEEECSTTSSHHHHH
T ss_pred CHHHHHHHHHHHH---cCCCCeEEEECcCCCCHHHHH
Confidence 4455544444333 343223888999999999887
No 205
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=40.75 E-value=9.5 Score=43.53 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=20.0
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+..++.|.|+ ++.++||||||...
T Consensus 85 ~ai~~i~~g~d~--i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 85 CSIPVISSGRDL--MACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHHhcCCCE--EEECCCCCCchHHH
Confidence 445667789884 66779999999865
No 206
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=40.65 E-value=2.6e+02 Score=27.08 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 487 EKEIQDLKQEILGLRQALKEANDQ 510 (1186)
Q Consensus 487 e~eI~eLkeEI~~Lr~~L~~~~~q 510 (1186)
..+|.+|+..+..|+.++.....+
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~ 58 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQ 58 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345555555555555555444333
No 207
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=40.45 E-value=3.5e+02 Score=32.04 Aligned_cols=16 Identities=31% Similarity=0.297 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 001022 577 TIKTLQAKINSIESQR 592 (1186)
Q Consensus 577 eIe~LqqeIeeLe~qL 592 (1186)
.|..||.-|+.+..++
T Consensus 133 ~IrvLq~~l~~q~skI 148 (491)
T 1m1j_A 133 RIKALQNSIQEQVVEM 148 (491)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444333333
No 208
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=40.41 E-value=9.3 Score=41.89 Aligned_cols=33 Identities=9% Similarity=0.158 Sum_probs=21.4
Q ss_pred HHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 203 LFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 203 VFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
....+...+..+. ..+..|+-||.+|+|||+..
T Consensus 10 ~~~~~~~~~~~~a-~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 10 AMQHLLNEIAMVA-PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp HHHHHHHHHHHHC-STTSCEEEESCTTSCHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCcEEEECCCCchHHHHH
Confidence 3334434444443 34567888999999999865
No 209
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=40.05 E-value=1.2e+02 Score=27.63 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 555 NQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1186)
Q Consensus 555 ~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLk 593 (1186)
.++.++-....-++.++.........++.++.+++.+++
T Consensus 37 ~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 37 AKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444333334444555555555566666666665553
No 210
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=40.00 E-value=2.1e+02 Score=26.41 Aligned_cols=24 Identities=8% Similarity=0.332 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 571 IQQRDSTIKTLQAKINSIESQRNE 594 (1186)
Q Consensus 571 iqq~e~eIe~LqqeIeeLe~qLke 594 (1186)
+++.+..++.|..+++.|+.++.+
T Consensus 47 L~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 47 LREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566666666655544
No 211
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=39.82 E-value=13 Score=45.41 Aligned_cols=45 Identities=29% Similarity=0.443 Sum_probs=31.4
Q ss_pred eecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 188 FEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 188 FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
|.+..+ .|...|..-+.. +++.+-.|... ....|.||||||+||.
T Consensus 2 ~~~~~~-~~~~~q~~ai~~---l~~~~~~~~~~-~~l~g~tgs~kt~~~a 46 (664)
T 1c4o_A 2 FRYRGP-SPKGDQPKAIAG---LVEALRDGERF-VTLLGATGTGKTVTMA 46 (664)
T ss_dssp CCCCSC-CCCTTHHHHHHH---HHHHHHTTCSE-EEEEECTTSCHHHHHH
T ss_pred CCCCCC-CCCCCChHHHHH---HHHHHhcCCCc-EEEEcCCCcHHHHHHH
Confidence 444444 888888777654 45555667543 3457999999999995
No 212
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=39.80 E-value=12 Score=43.89 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=20.4
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
..+..++.|.+-.++..++||||||.+.
T Consensus 101 ~~i~~~l~~~~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 101 KTIKPILSSEDHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp HHHHHHHSSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCCCccHHH
Confidence 3455667555556788899999999874
No 213
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=39.71 E-value=7.3 Score=46.30 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=28.1
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhh-----hcCCc----cEEEEeeccCCCCccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQPFVQS-----ALDGY----NVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~PLV~s-----vLdGy----NvcIfAYGQTGSGKTyTM 236 (1186)
..++|+.|.+.+. +-..+..++.. .+... ...|+-||++|+|||+.+
T Consensus 26 ~~~~f~dv~G~~~----~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEE----AKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHH----HHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHH----HHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 3567888876543 33333333322 12221 223899999999999887
No 214
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=39.51 E-value=4.9e+02 Score=29.84 Aligned_cols=28 Identities=29% Similarity=0.208 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 482 ELYEREKEIQDLKQEILGLRQALKEAND 509 (1186)
Q Consensus 482 el~~le~eI~eLkeEI~~Lr~~L~~~~~ 509 (1186)
+.+.+..+.....+|+..-++++++.++
T Consensus 141 ~~~~~~~~~~~~~~e~~~k~~a~~af~~ 168 (373)
T 3hhm_B 141 EYDRLYEEYTRTSQEIQMKRTAIEAFNE 168 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 3344555556666666666666654443
No 215
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=39.46 E-value=13 Score=45.90 Aligned_cols=38 Identities=34% Similarity=0.337 Sum_probs=26.5
Q ss_pred ChhhHHhchHHhHhhhcCCcc------EEEEeeccCCCCccccc
Q 001022 199 GQAELFSDVQPFVQSALDGYN------VSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 199 sQeeVFeeV~PLV~svLdGyN------vcIfAYGQTGSGKTyTM 236 (1186)
.|..+...+...+..+..|.. +.|+-||++|+|||++.
T Consensus 495 Gq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 495 GQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 538 (758)
T ss_dssp SCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 366666666555555554443 37899999999999876
No 216
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=39.26 E-value=6.2 Score=49.47 Aligned_cols=42 Identities=26% Similarity=0.323 Sum_probs=26.2
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 189 tFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
.||.|++. ++. +..+++-+..+....++-||++|+|||+.+.
T Consensus 168 ~ld~viGr----~~~---i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 168 KLDPVIGR----DEE---IRRVIQILLRRTKNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CSCCCCSC----HHH---HHHHHHHHHCSSCCCCEEEECTTSCHHHHHH
T ss_pred CCcccCCc----HHH---HHHHHHHHhcCCCCceEEEcCCCCCHHHHHH
Confidence 45655553 333 3334443344554557789999999999884
No 217
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=39.14 E-value=11 Score=38.69 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=20.1
Q ss_pred HhHhhhcCC---ccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDG---YNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdG---yNvcIfAYGQTGSGKTyTM 236 (1186)
+-++.++.| ...++.-+|++|||||..+
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 445666643 2346777999999999987
No 218
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=39.13 E-value=5.7e+02 Score=30.57 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=35.9
Q ss_pred CCchhhhhhHHHHHHHHhhhhhhhhhhhhhhcccccchhhhhHHHHHhhhhhhhHHHHHHHHHhhccceeeec
Q 001022 976 PSTDALGQLLSEYAKRVYNSQLQHLKDIAGTLATEDAEDASQVSKLRSALESVDHRRRKVLQQMRSDVALLTL 1048 (1186)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1048 (1186)
|-+=..+||.+.--+-||+..||- .=||-= +--.||-||--+.--|.|++.
T Consensus 465 ~Y~~SY~ql~~NA~~~v~~~elQ~-------------------HiLRGP---l~~QRR~IlnAl~hGv~ii~~ 515 (526)
T 3iyk_A 465 HYDISFSDLRGNAQRIVYDDELQM-------------------HILRGP---IHFQRRAILGALKFGCKVLGD 515 (526)
T ss_pred cchhhHHHHHHHHHHHhCCHHHHH-------------------HHHcCc---hHHHHHHHHHHHHhceeecCC
Confidence 344457888888888999988872 223332 234688999988888888854
No 219
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=39.13 E-value=9 Score=44.82 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=19.1
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.+..++.|.+-.++..++||||||.+.
T Consensus 149 ai~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 149 ALPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp SHHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHHHcCCCCCEEEECCCCccHHHHH
Confidence 345566663344677899999999874
No 220
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=38.84 E-value=2.8e+02 Score=26.79 Aligned_cols=21 Identities=14% Similarity=0.253 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001022 570 QIQQRDSTIKTLQAKINSIES 590 (1186)
Q Consensus 570 qiqq~e~eIe~LqqeIeeLe~ 590 (1186)
...+++.+++.|+.+|.=|++
T Consensus 84 ~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 84 ARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455666666666666554
No 221
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=38.81 E-value=2.5e+02 Score=26.34 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 567 QKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 567 ~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
......+.+.++..|+.++..++..+
T Consensus 35 ~e~~~~~~E~Ei~sL~kk~~~lE~el 60 (101)
T 3u1c_A 35 AEERSKQLEDDIVQLEKQLRVTEDSR 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555444
No 222
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=38.71 E-value=11 Score=43.35 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=18.6
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.+..++.|.|+ +..++||||||.+.
T Consensus 15 ~i~~~~~~~~~--l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKNA--LICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHcCCCE--EEEcCCCChHHHHH
Confidence 34555678874 56789999999875
No 223
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=38.21 E-value=13 Score=37.55 Aligned_cols=17 Identities=29% Similarity=0.159 Sum_probs=13.8
Q ss_pred EEEeeccCCCCcccccc
Q 001022 221 SIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM~ 237 (1186)
++.-+|++|||||+.+.
T Consensus 25 ~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSL 41 (235)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 45568999999998863
No 224
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=38.00 E-value=20 Score=44.80 Aligned_cols=51 Identities=24% Similarity=0.308 Sum_probs=32.9
Q ss_pred ceeecceeeCCCCChhhHHhch-HHhHh-hhcC----CccEEEEeeccCCCCccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDV-QPFVQ-SALD----GYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV-~PLV~-svLd----GyNvcIfAYGQTGSGKTyTM 236 (1186)
..++||.|.+.+..-+.+.+.+ .|+-. .++. ....+|+-||++|||||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 4678898888776666666554 23322 1121 22345888999999999766
No 225
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=37.72 E-value=2.5e+02 Score=25.92 Aligned_cols=20 Identities=45% Similarity=0.667 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001022 632 KLEEELKKRDALIERLHEEN 651 (1186)
Q Consensus 632 KLEEeLkkrd~lIe~l~ee~ 651 (1186)
.|.+.|+.++..|+++|.++
T Consensus 58 ~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 58 QLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 35566666777777777665
No 226
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.60 E-value=62 Score=32.43 Aligned_cols=25 Identities=16% Similarity=0.407 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 565 QEQKMQIQQRDSTIKTLQAKINSIE 589 (1186)
Q Consensus 565 eE~k~qiqq~e~eIe~LqqeIeeLe 589 (1186)
..++.++.+.+..+..++..+.+|+
T Consensus 106 ~~L~~ql~e~e~ll~~lq~QL~~LK 130 (135)
T 2e7s_A 106 KRLTEQLREKDMLLDTLTLQLKNLK 130 (135)
T ss_dssp HHHHHTTTHHHHCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555556666665555
No 227
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=37.57 E-value=1.7e+02 Score=26.15 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 538 MLADKHKIEKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 538 ~L~ek~k~ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
.+..++...++++..|.--+..+..+.....+.-..++.....++..+..|++.+
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~ 61 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKL 61 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc
Confidence 3444444445555555555555555544555555566667778888888888655
No 228
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=37.42 E-value=8 Score=43.03 Aligned_cols=18 Identities=39% Similarity=0.425 Sum_probs=14.8
Q ss_pred cEEEEeeccCCCCccccc
Q 001022 219 NVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 219 NvcIfAYGQTGSGKTyTM 236 (1186)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 345777999999999875
No 229
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=37.17 E-value=9.6 Score=37.91 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=15.0
Q ss_pred EEEEeeccCCCCcccccc
Q 001022 220 VSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 220 vcIfAYGQTGSGKTyTM~ 237 (1186)
-++.-.|++|||||+.+-
T Consensus 10 ei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 356779999999999874
No 230
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=37.13 E-value=11 Score=43.51 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=25.0
Q ss_pred CCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 197 HVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 197 ~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
+..|.+++..+...+. .|. ..++-.|..|||||+++
T Consensus 27 n~~Q~~av~~~~~~i~---~~~-~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 27 TEGQKNAFNIVMKAIK---EKK-HHVTINGPAGTGATTLT 62 (459)
T ss_dssp CHHHHHHHHHHHHHHH---SSS-CEEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHHHHHHh---cCC-CEEEEEeCCCCCHHHHH
Confidence 4568777766533333 233 37888999999999877
No 231
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.11 E-value=2.8e+02 Score=26.36 Aligned_cols=19 Identities=5% Similarity=-0.011 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001022 575 DSTIKTLQAKINSIESQRN 593 (1186)
Q Consensus 575 e~eIe~LqqeIeeLe~qLk 593 (1186)
......++.++.+|+.+|.
T Consensus 75 r~e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 75 RKEKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444455666666666554
No 232
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=36.99 E-value=3.6e+02 Score=27.55 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=27.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 625 DSSAVSKKLEEELKKRDALIERLHEENEKLFDR 657 (1186)
Q Consensus 625 d~~~~~kKLEEeLkkrd~lIe~l~ee~ekl~~r 657 (1186)
.+..+..+|+++|+.++.+|+.++.++..|+.=
T Consensus 112 ~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v 144 (154)
T 2ocy_A 112 AIEILNKRLTEQLREKDTLLDTLTLQLKNLKKV 144 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677899999999999999999999987543
No 233
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=36.84 E-value=17 Score=40.15 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=15.6
Q ss_pred cEEEEeeccCCCCccccc
Q 001022 219 NVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 219 NvcIfAYGQTGSGKTyTM 236 (1186)
..+|.-.|++|||||.|+
T Consensus 100 g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 357778899999999998
No 234
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=36.75 E-value=3e+02 Score=26.66 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 001022 486 REKEIQDLKQEILGL 500 (1186)
Q Consensus 486 le~eI~eLkeEI~~L 500 (1186)
+..+|.+|++++..+
T Consensus 43 Kq~~idelk~ei~q~ 57 (110)
T 2v4h_A 43 KQELIDKLKEEAEQH 57 (110)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 235
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=36.74 E-value=14 Score=44.43 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=20.4
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.+|..++.|.| ++..++||||||.+.
T Consensus 51 ~~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 51 ETINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHHcCCC--EEEEECCCChHHHHH
Confidence 45666788988 567889999999764
No 236
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=36.70 E-value=13 Score=42.73 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=18.0
Q ss_pred HhhhcCCccEEEEeeccCCCCccccc
Q 001022 211 VQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 211 V~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
+..++.|.|+ +..++||||||.+.
T Consensus 13 i~~~~~~~~~--l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKNT--IICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHhCCCCE--EEEeCCCChHHHHH
Confidence 4455678874 55689999999774
No 237
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=36.69 E-value=11 Score=45.76 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=18.2
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.|..++.....+ +-.|+.|||||+|+
T Consensus 197 AV~~al~~~~~~-lI~GPPGTGKT~ti 222 (646)
T 4b3f_X 197 AVLFALSQKELA-IIHGPPGTGKTTTV 222 (646)
T ss_dssp HHHHHHHCSSEE-EEECCTTSCHHHHH
T ss_pred HHHHHhcCCCce-EEECCCCCCHHHHH
Confidence 355555443443 56799999999997
No 238
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=36.64 E-value=16 Score=44.82 Aligned_cols=38 Identities=26% Similarity=0.286 Sum_probs=25.4
Q ss_pred ChhhHHhchHHhHhhhcCCc------cEEEEeeccCCCCccccc
Q 001022 199 GQAELFSDVQPFVQSALDGY------NVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 199 sQeeVFeeV~PLV~svLdGy------NvcIfAYGQTGSGKTyTM 236 (1186)
.|.++-..+...+.....|. .+.|+-||++|+|||++.
T Consensus 462 g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 462 GQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHH
Confidence 34555555544455444444 257899999999999886
No 239
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=36.57 E-value=6.2e+02 Score=30.23 Aligned_cols=42 Identities=10% Similarity=0.271 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 552 QLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1186)
Q Consensus 552 qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLk 593 (1186)
+-+..++...+...+....+...+.....++..+++++...+
T Consensus 70 kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae~ek~k~ 111 (497)
T 3iox_A 70 KYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALAELEKHKN 111 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 333444444444555556666777777777777777775443
No 240
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=36.51 E-value=19 Score=38.00 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=15.0
Q ss_pred cEEEEeeccCCCCccccc
Q 001022 219 NVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 219 NvcIfAYGQTGSGKTyTM 236 (1186)
...|+-.|+.|||||+..
T Consensus 32 ~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp CEEEEEESCGGGTTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 357889999999999754
No 241
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=36.40 E-value=7.6 Score=42.32 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=14.4
Q ss_pred EEEeeccCCCCcccccc
Q 001022 221 SIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM~ 237 (1186)
.|+-||++|+|||+.+.
T Consensus 48 ~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVN 64 (331)
T ss_dssp CEEEESCCCHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHH
Confidence 46779999999999873
No 242
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=36.37 E-value=6.9 Score=42.80 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=18.5
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.+..++.|.++ +..++||||||.+.
T Consensus 51 ~i~~i~~~~~~--lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 51 AIMPIIEGHDV--LAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHTCCE--EECCCSSHHHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 45556678774 56789999999874
No 243
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=35.95 E-value=15 Score=42.69 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=25.3
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 189 tFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
.||.|.+ ++..... ++..+-.+....++-||++|+|||+...
T Consensus 178 ~ld~iiG----r~~~i~~---l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 178 SLDPVIG----RSKEIQR---VIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CSCCCCC----CHHHHHH---HHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccC----cHHHHHH---HHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 3555554 3333333 3333333444556789999999999874
No 244
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=35.72 E-value=13 Score=38.83 Aligned_cols=24 Identities=29% Similarity=0.187 Sum_probs=17.0
Q ss_pred HhhhcCCccEEEEeeccCCCCccccc
Q 001022 211 VQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 211 V~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
++++-.|.-++ -.|+.|||||+.+
T Consensus 16 l~~i~~Ge~~~--liG~nGsGKSTLl 39 (208)
T 3b85_A 16 VDAIDTNTIVF--GLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHCSEEE--EECCTTSSTTHHH
T ss_pred HHhccCCCEEE--EECCCCCCHHHHH
Confidence 34444565544 4899999999887
No 245
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=35.69 E-value=2.7e+02 Score=25.83 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001022 570 QIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 570 qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
++..+..++..++.+++.|+.++
T Consensus 79 ~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 79 TLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555444
No 246
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=35.44 E-value=8.6 Score=45.28 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=15.2
Q ss_pred EEEEeeccCCCCccccc
Q 001022 220 VSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 220 vcIfAYGQTGSGKTyTM 236 (1186)
..++-||++|+|||++.
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 47888999999999987
No 247
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=35.42 E-value=2.5e+02 Score=25.25 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 001022 574 RDSTIKTLQAKINSIE 589 (1186)
Q Consensus 574 ~e~eIe~LqqeIeeLe 589 (1186)
.+..+..|+.+|..|+
T Consensus 39 ~E~ev~~L~kKiq~lE 54 (81)
T 1ic2_A 39 LEDELVALQKKLKGTE 54 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 248
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=35.39 E-value=14 Score=42.20 Aligned_cols=25 Identities=28% Similarity=0.081 Sum_probs=18.2
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.+..++.|.+ ++..|+||||||.+.
T Consensus 101 ai~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 101 ALERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHHHhcCC--EEEEeCCCCCHHHHH
Confidence 3445566655 566789999999986
No 249
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=35.31 E-value=12 Score=35.78 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=13.5
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
.|+-.|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999854
No 250
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=35.17 E-value=47 Score=26.20 Aligned_cols=26 Identities=38% Similarity=0.645 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 630 SKKLEEELKKRDALIERLHEENEKLF 655 (1186)
Q Consensus 630 ~kKLEEeLkkrd~lIe~l~ee~ekl~ 655 (1186)
..||-.++..+|+.|+++.++|+.|.
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45788899999999999999999874
No 251
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=35.11 E-value=15 Score=45.93 Aligned_cols=37 Identities=30% Similarity=0.275 Sum_probs=25.3
Q ss_pred hhhHHhchHHhHhhhcCCc------cEEEEeeccCCCCccccc
Q 001022 200 QAELFSDVQPFVQSALDGY------NVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 200 QeeVFeeV~PLV~svLdGy------NvcIfAYGQTGSGKTyTM 236 (1186)
|..+...+...|..+..|. ...|+-||++|+|||++.
T Consensus 563 ~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 563 QDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 605 (854)
T ss_dssp CHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHH
T ss_pred cHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 5555555555555554432 168999999999999876
No 252
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=34.84 E-value=1.8e+02 Score=28.34 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001022 567 QKMQIQQRDSTIKTLQAKINSIESQRNEALHSS 599 (1186)
Q Consensus 567 ~k~qiqq~e~eIe~LqqeIeeLe~qLke~l~s~ 599 (1186)
++.-++++...+..|+.+|.+|++++.......
T Consensus 60 NK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va~~ 92 (113)
T 4fi5_A 60 NKRTLTDREGVAVSIQAKIDELKRQLADRIATG 92 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778899999999999999999998765544
No 253
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=34.21 E-value=14 Score=37.12 Aligned_cols=28 Identities=36% Similarity=0.432 Sum_probs=19.9
Q ss_pred hHhhhcC-Cc--cEEEEeeccCCCCcccccc
Q 001022 210 FVQSALD-GY--NVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 210 LV~svLd-Gy--NvcIfAYGQTGSGKTyTM~ 237 (1186)
-++.++. |. ...+.-+|.+|||||..+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHH
Confidence 3555554 33 3468889999999998763
No 254
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=33.70 E-value=3e+02 Score=25.68 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 569 MQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 569 ~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
....+.+.++..|+.++..++.++
T Consensus 37 ~~~~~~E~ei~sL~kKiq~lE~el 60 (101)
T 3u59_A 37 DRCKQLEEEQQGLQKKLKGTEDEV 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433
No 255
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=33.67 E-value=13 Score=40.86 Aligned_cols=17 Identities=41% Similarity=0.636 Sum_probs=14.0
Q ss_pred EEEeeccCCCCcccccc
Q 001022 221 SIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM~ 237 (1186)
.|.-.|++|+|||+|+.
T Consensus 107 vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45557999999999983
No 256
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=33.46 E-value=17 Score=36.73 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=19.3
Q ss_pred HhHhhhcC-Cc--cEEEEeeccCCCCccccc
Q 001022 209 PFVQSALD-GY--NVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLd-Gy--NvcIfAYGQTGSGKTyTM 236 (1186)
+-++.++. |. .-++.-+|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 34455553 32 346778899999999886
No 257
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=33.19 E-value=12 Score=37.35 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=13.3
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999877
No 258
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=32.93 E-value=21 Score=36.30 Aligned_cols=20 Identities=20% Similarity=0.076 Sum_probs=15.7
Q ss_pred CccEEEEeeccCCCCccccc
Q 001022 217 GYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 217 GyNvcIfAYGQTGSGKTyTM 236 (1186)
+..-.|.-.|++|||||+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34456677899999999876
No 259
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=32.90 E-value=21 Score=36.23 Aligned_cols=20 Identities=25% Similarity=0.184 Sum_probs=16.4
Q ss_pred CccEEEEeeccCCCCccccc
Q 001022 217 GYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 217 GyNvcIfAYGQTGSGKTyTM 236 (1186)
.....|.-.|.+|||||+.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34467888999999999876
No 260
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=32.86 E-value=2.1e+02 Score=26.28 Aligned_cols=31 Identities=16% Similarity=0.404 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 001022 567 QKMQIQQRDSTIKTLQAKINSIESQRNEALH 597 (1186)
Q Consensus 567 ~k~qiqq~e~eIe~LqqeIeeLe~qLke~l~ 597 (1186)
++.-++++...+..|+.+|.+|++++.....
T Consensus 43 NK~~~~~R~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 43 NKSTLQSRRAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788899999999999999999875443
No 261
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=32.82 E-value=19 Score=43.00 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=15.3
Q ss_pred cEEEEeeccCCCCccccc
Q 001022 219 NVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 219 NvcIfAYGQTGSGKTyTM 236 (1186)
..+|.-.|.+|||||.++
T Consensus 293 GeVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTI 310 (503)
T ss_dssp TEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCcccHHHHH
Confidence 346778899999999998
No 262
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=32.68 E-value=1.3e+02 Score=27.83 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 546 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIES 590 (1186)
Q Consensus 546 ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~ 590 (1186)
++|++..|+..+ +........+|...+..|+.++..|.+|+.
T Consensus 38 ekEqL~~LKkkl---~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 38 AKEQLAALKKHK---ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344455555444 222233445566666667777777766653
No 263
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=32.31 E-value=1.6e+02 Score=26.53 Aligned_cols=26 Identities=8% Similarity=0.175 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 568 KMQIQQRDSTIKTLQAKINSIESQRN 593 (1186)
Q Consensus 568 k~qiqq~e~eIe~LqqeIeeLe~qLk 593 (1186)
...|..++..+.....+|.+|+.++.
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777777777776664
No 264
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=32.12 E-value=23 Score=41.52 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=17.6
Q ss_pred CccEEEEeeccCCCCcccccc
Q 001022 217 GYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 217 GyNvcIfAYGQTGSGKTyTM~ 237 (1186)
+....|+..|.+|+|||+|..
T Consensus 98 ~~p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 98 EKPTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp SSSEEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHH
Confidence 345678889999999999984
No 265
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=32.04 E-value=13 Score=41.85 Aligned_cols=20 Identities=35% Similarity=0.321 Sum_probs=15.7
Q ss_pred cCCccEEEEeeccCCCCccccc
Q 001022 215 LDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 215 LdGyNvcIfAYGQTGSGKTyTM 236 (1186)
-.|.+.+| .|+||||||+++
T Consensus 173 ~~G~~i~i--vG~sGsGKSTll 192 (361)
T 2gza_A 173 QLERVIVV--AGETGSGKTTLM 192 (361)
T ss_dssp HTTCCEEE--EESSSSCHHHHH
T ss_pred hcCCEEEE--ECCCCCCHHHHH
Confidence 36776554 499999999987
No 266
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=31.98 E-value=3.1e+02 Score=25.30 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001022 487 EKEIQDLKQEILGLRQA 503 (1186)
Q Consensus 487 e~eI~eLkeEI~~Lr~~ 503 (1186)
+..|+.+-+.|.-|+..
T Consensus 12 E~KIq~avdtI~lLqmE 28 (81)
T 2jee_A 12 EAKVQQAIDTITLLQME 28 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 267
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=31.98 E-value=1.3e+02 Score=28.70 Aligned_cols=27 Identities=11% Similarity=0.283 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 567 QKMQIQQRDSTIKTLQAKINSIESQRN 593 (1186)
Q Consensus 567 ~k~qiqq~e~eIe~LqqeIeeLe~qLk 593 (1186)
++..+..++.++..|+++++.|+.++-
T Consensus 17 lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 17 LRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677788888888888888884
No 268
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=31.69 E-value=16 Score=43.99 Aligned_cols=25 Identities=40% Similarity=0.444 Sum_probs=18.9
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
++..+++|.| ++..++||||||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 3445566877 567799999999875
No 269
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=31.64 E-value=12 Score=45.22 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.4
Q ss_pred EEEEeeccCCCCcccccc
Q 001022 220 VSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 220 vcIfAYGQTGSGKTyTM~ 237 (1186)
..++..|++|||||+|+-
T Consensus 165 ~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVA 182 (608)
T ss_dssp SEEEEECCTTSTHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHH
Confidence 457889999999999983
No 270
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=31.54 E-value=14 Score=37.75 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=14.1
Q ss_pred EEEEeeccCCCCccccc
Q 001022 220 VSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 220 vcIfAYGQTGSGKTyTM 236 (1186)
-.|.-.|++|||||.++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 35667899999999886
No 271
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=31.49 E-value=13 Score=41.47 Aligned_cols=18 Identities=39% Similarity=0.438 Sum_probs=15.2
Q ss_pred cEEEEeeccCCCCccccc
Q 001022 219 NVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 219 NvcIfAYGQTGSGKTyTM 236 (1186)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 345888999999999876
No 272
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=31.33 E-value=13 Score=39.92 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=17.0
Q ss_pred HhhhcCCccEEEEeeccCCCCccccc
Q 001022 211 VQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 211 V~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
+..++.|.+ .++..++||||||.+.
T Consensus 37 i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHhCCCC-CEEEECCCCChHHHHH
Confidence 444455632 2456789999999875
No 273
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=31.30 E-value=19 Score=42.55 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=19.7
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.++..++.|.+--++..++||||||.+.
T Consensus 50 ~~i~~il~~~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 50 KTIKPILSSEDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp HHHHHHHCSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHHHccCCCeEEEEcCCCcHHHHHH
Confidence 4555666444445677889999999864
No 274
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=31.12 E-value=3e+02 Score=28.09 Aligned_cols=63 Identities=22% Similarity=0.139 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 001022 62 STKVQRLKDEIKFVKEDYLELRQEATDLQ---EYSNAKIDRVTRYLGVLADKTRKLDQVALEAEAR 124 (1186)
Q Consensus 62 ~~~v~~Lk~~l~~~~~~~~~Lr~e~~d~q---~~~~~~l~~v~~~l~~L~~~~~~l~~~~~E~e~r 124 (1186)
...|..|+.++..++..+..+..++.+-. +....++..++-.+..+.++.++++....+.-+|
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333211 1222333344445555556666665544444444
No 275
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=30.71 E-value=11 Score=42.33 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=15.0
Q ss_pred CCccEEEEeeccCCCCccccc
Q 001022 216 DGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 216 dGyNvcIfAYGQTGSGKTyTM 236 (1186)
.++|+ +..|+||||||+++
T Consensus 34 ~~~~~--~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 34 TNSNW--TILAKPGAGKSFTA 52 (392)
T ss_dssp CCCCE--EEECCTTSSHHHHH
T ss_pred ccCce--EEEcCCCCCHHHHH
Confidence 45554 56799999999988
No 276
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=30.56 E-value=25 Score=40.02 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=15.7
Q ss_pred cEEEEeeccCCCCccccc
Q 001022 219 NVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 219 NvcIfAYGQTGSGKTyTM 236 (1186)
..+|.-.|++|||||.|+
T Consensus 157 g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 457788899999999998
No 277
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=30.49 E-value=2.4e+02 Score=25.89 Aligned_cols=33 Identities=12% Similarity=0.199 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 58 KQALSTKVQRLKDEIKFVKEDYLELRQEATDLQ 90 (1186)
Q Consensus 58 k~~l~~~v~~Lk~~l~~~~~~~~~Lr~e~~d~q 90 (1186)
.+.+..+++.+..+=+.++.....+.+.+.+.+
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 344445555555544444444444444444433
No 278
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=30.40 E-value=15 Score=36.76 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=13.4
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
.|.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666799999999876
No 279
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=30.21 E-value=16 Score=42.30 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=20.3
Q ss_pred hhcCCccEEEEeeccCCCCccccc
Q 001022 213 SALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 213 svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.+++|.+..|.-.|++|+|||..|
T Consensus 25 ~vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 25 SVKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp TCC-CCCEEEEEECCTTSSHHHHH
T ss_pred EEecCCCEEEEEECCCCCcHHHHH
Confidence 368899999999999999999865
No 280
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=29.90 E-value=24 Score=41.16 Aligned_cols=19 Identities=37% Similarity=0.345 Sum_probs=15.6
Q ss_pred cEEEEeeccCCCCcccccc
Q 001022 219 NVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 219 NvcIfAYGQTGSGKTyTM~ 237 (1186)
...|+..|.+|||||+|+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp SEEEEECCCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4566777999999999983
No 281
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=29.84 E-value=19 Score=41.57 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=16.7
Q ss_pred hcCCccEEEEeeccCCCCccccc
Q 001022 214 ALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 214 vLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
+++|.|+ +..|+||||||...
T Consensus 5 l~~g~~v--lv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMTT--VLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCEE--EECCCTTSSTTTTH
T ss_pred hhCCCCE--EEEcCCCCCHHHHH
Confidence 4577774 57889999999984
No 282
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=29.64 E-value=17 Score=35.33 Aligned_cols=17 Identities=29% Similarity=0.282 Sum_probs=14.2
Q ss_pred EEEEeeccCCCCccccc
Q 001022 220 VSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 220 vcIfAYGQTGSGKTyTM 236 (1186)
..|+-.|..|||||+..
T Consensus 3 ~~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEecCCCCCHHHHH
Confidence 36888999999999854
No 283
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=29.48 E-value=15 Score=36.39 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.3
Q ss_pred EEEEeeccCCCCccccc
Q 001022 220 VSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 220 vcIfAYGQTGSGKTyTM 236 (1186)
.+|.-.|+.|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35777899999999876
No 284
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=29.20 E-value=17 Score=37.11 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=14.2
Q ss_pred EEEEeeccCCCCccccc
Q 001022 220 VSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 220 vcIfAYGQTGSGKTyTM 236 (1186)
..+.-+|++|||||..+
T Consensus 24 ~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35677999999999985
No 285
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=29.06 E-value=14 Score=42.13 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=15.3
Q ss_pred cEEEEeeccCCCCccccc
Q 001022 219 NVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 219 NvcIfAYGQTGSGKTyTM 236 (1186)
+.-++.+|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 455788999999999987
No 286
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=28.82 E-value=21 Score=42.81 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=18.0
Q ss_pred HhhhcCCccEEEEeeccCCCCccccc
Q 001022 211 VQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 211 V~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
+..++.|.|+ +..++||||||...
T Consensus 22 i~~~l~g~~~--iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 22 ALPAMKGKNT--IICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHcCCCE--EEEcCCCchHHHHH
Confidence 4455678874 57789999999854
No 287
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.70 E-value=17 Score=42.59 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=29.1
Q ss_pred eeecceeeCCCCChhhHHhch-HHhHh-hhcC----CccEEEEeeccCCCCccccc
Q 001022 187 DFEFDRVYGPHVGQAELFSDV-QPFVQ-SALD----GYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 187 ~FtFD~VF~p~asQeeVFeeV-~PLV~-svLd----GyNvcIfAYGQTGSGKTyTM 236 (1186)
.-+||.|=+-+.--+++.+.| .|+.. ..+. -.--.|+-||+.|+|||.+.
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHH
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHH
Confidence 345666666544444444443 34321 1221 23356999999999999764
No 288
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=28.68 E-value=18 Score=35.71 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=13.4
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
.|+-.|.+|||||+.-
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778999999999754
No 289
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=28.61 E-value=2.4e+02 Score=23.06 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001022 573 QRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 573 q~e~eIe~LqqeIeeLe~qL 592 (1186)
.++.-|.+|+.+|..|+.+.
T Consensus 28 nlekiianlrdeiarlenev 47 (52)
T 3he5_B 28 NLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 35667778888888887654
No 290
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=28.35 E-value=1.6e+02 Score=24.04 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 565 QEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 565 eE~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
.++.....++++++..|+.+..-|+..+
T Consensus 13 k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 13 KDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 3334444455556666666666555443
No 291
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=28.34 E-value=2.5e+02 Score=29.53 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 482 ELYEREKEIQDLKQEILGLRQALK 505 (1186)
Q Consensus 482 el~~le~eI~eLkeEI~~Lr~~L~ 505 (1186)
.++..+..|..|..|+..|.+++.
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~ 37 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLD 37 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555544
No 292
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=28.26 E-value=3.5e+02 Score=24.78 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001022 570 QIQQRDSTIKTLQAKINSIE 589 (1186)
Q Consensus 570 qiqq~e~eIe~LqqeIeeLe 589 (1186)
.-.+++.+++.|+.+|.=|+
T Consensus 64 ~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 64 ARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33445556666666655443
No 293
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=28.18 E-value=1.3e+02 Score=27.19 Aligned_cols=47 Identities=11% Similarity=-0.009 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 547 KEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQRN 593 (1186)
Q Consensus 547 kE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qLk 593 (1186)
.+++.+|..+++......++++..+.+....|..|+.++..|..+++
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666677777777777765554
No 294
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=28.14 E-value=5.2e+02 Score=26.74 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 546 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQ 591 (1186)
Q Consensus 546 ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~q 591 (1186)
++..+..+.+...+|.+-...........+.++..|+-++-.|.+.
T Consensus 101 LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~ 146 (170)
T 3l4q_C 101 LKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKI 146 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3444444444444444333334444556677777777777777653
No 295
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=27.85 E-value=7.3e+02 Score=28.37 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001022 483 LYEREKEIQDLKQEILGLRQALKEANDQCVLLYNEVQKAWKV 524 (1186)
Q Consensus 483 l~~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~qk~~k~ 524 (1186)
......+...|-++.....++++.. .+....+.|.-+.+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~e~~~k-~~a~~af~~~~~~f~~ 175 (373)
T 3hhm_B 135 FQEKSREYDRLYEEYTRTSQEIQMK-RTAIEAFNETIKIFEE 175 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHhccchHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3445556666666666666665432 2333445554444433
No 296
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=27.47 E-value=17 Score=36.16 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=13.6
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999999876
No 297
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=27.42 E-value=4.3e+02 Score=25.58 Aligned_cols=24 Identities=13% Similarity=0.254 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 488 KEIQDLKQEILGLRQALKEANDQC 511 (1186)
Q Consensus 488 ~eI~eLkeEI~~Lr~~L~~~~~q~ 511 (1186)
+.+.+|+..+.+|+..+.....+.
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~ 26 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKL 26 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666555554443
No 298
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=27.20 E-value=19 Score=35.08 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=14.5
Q ss_pred EEEEeeccCCCCccccc
Q 001022 220 VSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 220 vcIfAYGQTGSGKTyTM 236 (1186)
..|+-.|.+|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36889999999999765
No 299
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=27.14 E-value=18 Score=40.01 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=13.5
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
+|.-.|++|||||.++
T Consensus 104 vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTI 119 (304)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4556699999999998
No 300
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=27.02 E-value=17 Score=36.39 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=12.7
Q ss_pred EEeeccCCCCccccc
Q 001022 222 IFAYGQTHSGKTHTM 236 (1186)
Q Consensus 222 IfAYGQTGSGKTyTM 236 (1186)
|.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999887
No 301
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=26.86 E-value=17 Score=39.78 Aligned_cols=23 Identities=17% Similarity=0.502 Sum_probs=16.7
Q ss_pred hcCCccEEEEeeccCCCCccccc
Q 001022 214 ALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 214 vLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
+++|.+..|...|.+|+|||..|
T Consensus 13 ~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 13 VKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp -----CEEEEEEEETTSSHHHHH
T ss_pred EEcCCCEEEEEECCCCCCHHHHH
Confidence 57899999999999999999776
No 302
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=26.82 E-value=18 Score=37.02 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=13.6
Q ss_pred EEEeeccCCCCcccccc
Q 001022 221 SIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM~ 237 (1186)
++.-+|++|||||.++.
T Consensus 32 ~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 34458999999999874
No 303
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=26.74 E-value=19 Score=39.72 Aligned_cols=24 Identities=21% Similarity=0.046 Sum_probs=16.9
Q ss_pred HhhhcCCccEEEEeeccCCCCcccccc
Q 001022 211 VQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 211 V~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
+..++.| + ++..++||+|||.+..
T Consensus 18 i~~~~~~-~--~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 18 YAKCKET-N--CLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHGGGS-C--EEEECCTTSCHHHHHH
T ss_pred HHHHhhC-C--EEEEcCCCCCHHHHHH
Confidence 3445566 3 4557899999998873
No 304
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=26.74 E-value=3.1e+02 Score=26.03 Aligned_cols=33 Identities=15% Similarity=0.393 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 001022 567 QKMQIQQRDSTIKTLQAKINSIESQRNEALHSS 599 (1186)
Q Consensus 567 ~k~qiqq~e~eIe~LqqeIeeLe~qLke~l~s~ 599 (1186)
++.-++++...+..|+.+|.+|++++.......
T Consensus 43 Nk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~~~ 75 (96)
T 2ic9_A 43 NKSTLQSRRAAVSALETKLGELKRELADLIAAQ 75 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456778889999999999999999997765533
No 305
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=26.64 E-value=21 Score=43.88 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=19.8
Q ss_pred hHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
+++.+.......++-||++|+|||+.+.
T Consensus 198 l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 198 AIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp HHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred HHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 3443334455567889999999999884
No 306
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=26.47 E-value=14 Score=43.54 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=19.2
Q ss_pred HhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 209 PFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 209 PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.+|..+++|.++. ..++||||||.+.
T Consensus 32 ~~i~~il~g~d~l--v~apTGsGKTl~~ 57 (523)
T 1oyw_A 32 EIIDTVLSGRDCL--VVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHHTTCCEE--EECSCHHHHHHHH
T ss_pred HHHHHHHcCCCEE--EECCCCcHHHHHH
Confidence 3455667888754 4579999999765
No 307
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=26.46 E-value=18 Score=43.07 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=15.4
Q ss_pred cEEEEeeccCCCCcccccc
Q 001022 219 NVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 219 NvcIfAYGQTGSGKTyTM~ 237 (1186)
+..++..|..|||||+|+.
T Consensus 22 ~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp SSCEEEEECTTSCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHH
Confidence 4456778999999999983
No 308
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.43 E-value=1.4e+02 Score=24.45 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 560 LLQLEQEQKMQIQQRDSTIKTLQAKINSIES 590 (1186)
Q Consensus 560 Ll~~eeE~k~qiqq~e~eIe~LqqeIeeLe~ 590 (1186)
+.+.......+|...+++|.+|+.++.+|+.
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555677777777777777777764
No 309
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=26.37 E-value=17 Score=36.96 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=13.6
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
.+.-.|++|||||.++
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999987
No 310
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=26.35 E-value=4.7e+02 Score=25.64 Aligned_cols=20 Identities=45% Similarity=0.596 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 001022 642 ALIERLHEENEKLFDRLTEK 661 (1186)
Q Consensus 642 ~lIe~l~ee~ekl~~rlt~k 661 (1186)
+.++++-.+++-+..|+..+
T Consensus 92 ae~erlr~~~~~~~~r~~~~ 111 (121)
T 3mq7_A 92 AEVERLRRENQVLSVRIADK 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhhchhhhhHhhhc
Confidence 33444445555554454444
No 311
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=26.31 E-value=19 Score=36.50 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=12.9
Q ss_pred EEeeccCCCCccccc
Q 001022 222 IFAYGQTHSGKTHTM 236 (1186)
Q Consensus 222 IfAYGQTGSGKTyTM 236 (1186)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999987
No 312
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=26.16 E-value=20 Score=38.82 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=15.8
Q ss_pred ccEEEEeeccCCCCccccc
Q 001022 218 YNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 218 yNvcIfAYGQTGSGKTyTM 236 (1186)
++-+|...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 3557888999999999876
No 313
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=26.12 E-value=16 Score=37.09 Aligned_cols=17 Identities=29% Similarity=0.245 Sum_probs=14.8
Q ss_pred EEEeeccCCCCcccccc
Q 001022 221 SIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM~ 237 (1186)
.++-||..|||||+.+.
T Consensus 5 i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 5 LTVITGPMYSGKTTELL 21 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999999985
No 314
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=26.05 E-value=19 Score=35.69 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=13.7
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
.|.-.|+.|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4667899999999887
No 315
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=26.01 E-value=31 Score=42.12 Aligned_cols=49 Identities=27% Similarity=0.386 Sum_probs=35.6
Q ss_pred ceeecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTMEG 238 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~G 238 (1186)
+.|....=|.|...|..-+.. +++.+-.|... ....|.|||||||||-.
T Consensus 3 ~~~~~~~~~~p~~~Q~~~i~~---l~~~~~~~~~~-~~l~g~~gs~k~~~~a~ 51 (661)
T 2d7d_A 3 DRFELVSKYQPQGDQPKAIEK---LVKGIQEGKKH-QTLLGATGTGKTFTVSN 51 (661)
T ss_dssp CCCCCCCSCCCCTTHHHHHHH---HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CcceeecCCCCCCCCHHHHHH---HHHHHhcCCCc-EEEECcCCcHHHHHHHH
Confidence 347777778999999887665 45555666533 34569999999999963
No 316
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=25.81 E-value=2.1e+02 Score=24.13 Aligned_cols=38 Identities=11% Similarity=0.260 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 551 AQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSI 588 (1186)
Q Consensus 551 ~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeL 588 (1186)
.+++.++..+-.++..+..-+++...+|..|..+++.|
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555554444444445555555555555555544
No 317
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=25.74 E-value=26 Score=45.04 Aligned_cols=73 Identities=15% Similarity=0.171 Sum_probs=41.6
Q ss_pred CCCchhhhhhhhhhhcHHHHHHHHHHHHhhccccchhhhhHhHHHhhHHHHHhhCccccc-cCchhHHHHHHHHHHHHHH
Q 001022 1057 NPSTAAEDARLASLISLDGILNQVKDAVRQSSVNTLSRSKKKAMLTSLDELAERMPSLLD-IDHPCAQRQIADARRMVEV 1135 (1186)
Q Consensus 1057 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 1135 (1186)
+|....-=-+.|+=.|+.+|++. -+...+.+- ....+||||..||..--. |-+| .-..+|-+.
T Consensus 918 ~~~l~~~v~~Wa~g~~f~~i~~~-----t~~~eG~~v-----R~~~rl~e~~~q~~~aa~~~g~~------~l~~k~~~a 981 (997)
T 4a4z_A 918 RFAMMNVVYEWARGLSFKEIMEM-----SPEAEGTVV-----RVITWLDEICREVKTASIIIGNS------TLHMKMSRA 981 (997)
T ss_dssp TTTTHHHHHHHHHTCCHHHHHHT-----CSSCHHHHH-----HHHHHHHHHHHHHHHHHHHHTCH------HHHHHHHHH
T ss_pred ChHHHHHHHHHhCCCCHHHHHhc-----CCCCchHHH-----HHHHHHHHHHHHHHHHHHhcCCH------HHHHHHHHH
Confidence 44444444467788888888854 223333332 246788888888754211 1111 224566666
Q ss_pred HHhhccccee
Q 001022 1136 LQQMRSDVAL 1145 (1186)
Q Consensus 1136 ~~~~~~~~~~ 1145 (1186)
+.-+|+||..
T Consensus 982 ~~~i~R~iv~ 991 (997)
T 4a4z_A 982 QELIKRDIVF 991 (997)
T ss_dssp HHHHSCGGGG
T ss_pred HHHhcCCeee
Confidence 7778888763
No 318
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=25.70 E-value=19 Score=38.35 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=16.1
Q ss_pred EEEEeeccCCCCccccccc
Q 001022 220 VSIFAYGQTHSGKTHTMEG 238 (1186)
Q Consensus 220 vcIfAYGQTGSGKTyTM~G 238 (1186)
..++-||.+|||||..+.+
T Consensus 13 ~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 5678899999999998853
No 319
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=25.64 E-value=5.3e+02 Score=26.02 Aligned_cols=23 Identities=13% Similarity=0.384 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001022 566 EQKMQIQQRDSTIKTLQAKINSI 588 (1186)
Q Consensus 566 E~k~qiqq~e~eIe~LqqeIeeL 588 (1186)
.++.++.+.+...+.|+++++.+
T Consensus 111 ~~~~~l~e~e~~leeyK~Kl~rv 133 (152)
T 4fla_A 111 NQKDVLSEKEKKLEEYKQKLARV 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544443
No 320
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=25.61 E-value=22 Score=36.70 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=9.3
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
.|.-.|++|||||.++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999887
No 321
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=25.51 E-value=30 Score=33.39 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=22.0
Q ss_pred HHhHhhhcC-CccEEEEeeccCCCCccccc
Q 001022 208 QPFVQSALD-GYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 208 ~PLV~svLd-GyNvcIfAYGQTGSGKTyTM 236 (1186)
..++..++. .....|...|.+|+|||..+
T Consensus 6 ~~~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 6 SSMFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHHHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 344555666 56778889999999999766
No 322
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=25.46 E-value=3.9e+02 Score=24.44 Aligned_cols=20 Identities=15% Similarity=0.396 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001022 487 EKEIQDLKQEILGLRQALKE 506 (1186)
Q Consensus 487 e~eI~eLkeEI~~Lr~~L~~ 506 (1186)
+.++..+..++..++..+..
T Consensus 13 eeEm~~~eeel~~lke~l~k 32 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAK 32 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666655543
No 323
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=25.43 E-value=22 Score=42.99 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=17.7
Q ss_pred HhhhcCCccEEEEeeccCCCCcccccc
Q 001022 211 VQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 211 V~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
|..++.+ ..++-.|+.|||||+|+.
T Consensus 189 v~~~l~~--~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 189 VKTVLQR--PLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp HHHHHTC--SEEEEECCTTSCHHHHHH
T ss_pred HHHHhcC--CCeEEECCCCCCHHHHHH
Confidence 4444432 345679999999999984
No 324
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=25.41 E-value=20 Score=36.49 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=14.5
Q ss_pred hcCCccEEEEeeccCCCCccccc
Q 001022 214 ALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 214 vLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
+-.|. ++.-.|++|||||.++
T Consensus 17 i~~Ge--i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 17 AAVGR--VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp --CCC--EEEEECSTTSSHHHHH
T ss_pred CCCCC--EEEEECCCCCCHHHHH
Confidence 33454 3455799999999887
No 325
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=25.18 E-value=19 Score=38.81 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=16.7
Q ss_pred cEEEEeeccCCCCcccccc
Q 001022 219 NVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 219 NvcIfAYGQTGSGKTyTM~ 237 (1186)
...||..|..|+||||+|.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp CEEEEEESSTTSSHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHH
Confidence 3569999999999999985
No 326
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=24.89 E-value=21 Score=35.14 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=13.6
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
.|+-.|.+|||||+..
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 4678999999999865
No 327
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=24.86 E-value=3e+02 Score=23.33 Aligned_cols=33 Identities=30% Similarity=0.370 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 485 EREKEIQDLKQEILGLRQALKEANDQCVLLYNE 517 (1186)
Q Consensus 485 ~le~eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E 517 (1186)
.+-.++..|+.|+.-||.+|+.-..+...++.|
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~e 39 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETE 39 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhh
Confidence 445667778888888888887665555545444
No 328
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=24.82 E-value=30 Score=42.56 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=25.4
Q ss_pred ecceeeCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 189 EFDRVYGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 189 tFD~VF~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
.||.|.+ ++.....+ +..+..+....++-||++|+|||....
T Consensus 178 ~ld~iiG----~~~~i~~l---~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 178 SLDPVIG----RSKEIQRV---IEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp CSCCCCC----CHHHHHHH---HHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccC----chHHHHHH---HHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 3555554 34443333 333333455557889999999998763
No 329
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=24.60 E-value=26 Score=34.79 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=16.5
Q ss_pred cCCccEEEEeeccCCCCccccc
Q 001022 215 LDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 215 LdGyNvcIfAYGQTGSGKTyTM 236 (1186)
+.+....|.-.|.+|||||+..
T Consensus 4 ~~~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 4 EAKHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp --CCCEEEEEEECTTSCHHHHH
T ss_pred cccCceEEEEECCCCCCHHHHH
Confidence 3455667889999999999754
No 330
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=24.50 E-value=17 Score=41.87 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=22.1
Q ss_pred eCCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCcccccc
Q 001022 194 YGPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 194 F~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM~ 237 (1186)
|.+..-|.+.+.. ++.|.+ ++..|+||||||.+..
T Consensus 112 ~~l~~~Q~~ai~~-------~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 112 IEPHWYQKDAVFE-------GLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp ECCCHHHHHHHHH-------HHHHSE--EEEECCSTTTHHHHHH
T ss_pred CCCCHHHHHHHHH-------HHhcCC--cEEEeCCCCCHHHHHH
Confidence 3445555555443 334544 4567999999999874
No 331
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=24.09 E-value=27 Score=43.21 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=18.9
Q ss_pred hHhhhcCCccEEEEeeccCCCCccccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.+..++.|.|+ +..++||||||.+.
T Consensus 256 ~i~~~l~~~~~--ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 256 LAQPAINGKNA--LICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHhCCCE--EEEeCCCChHHHHH
Confidence 44556788874 56789999999875
No 332
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=23.95 E-value=22 Score=43.36 Aligned_cols=21 Identities=38% Similarity=0.335 Sum_probs=15.9
Q ss_pred hcCCccEEEEeeccCCCCccccc
Q 001022 214 ALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 214 vLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
+.+|.| ++..|+||||||...
T Consensus 36 ~~~~~~--~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 36 ILEGKN--ALISIPTASGKTLIA 56 (720)
T ss_dssp GGGTCE--EEEECCGGGCHHHHH
T ss_pred hcCCCc--EEEEcCCccHHHHHH
Confidence 345655 677899999999765
No 333
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=23.84 E-value=1e+02 Score=24.33 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 476 ANDARKELYEREKEIQDLKQEILGLR 501 (1186)
Q Consensus 476 ~~~~~~el~~le~eI~eLkeEI~~Lr 501 (1186)
.+++.+++...+.+|..|++|+..|.
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34566777788888888888877765
No 334
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=23.68 E-value=27 Score=35.22 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=15.8
Q ss_pred CccEEEEeeccCCCCccccc
Q 001022 217 GYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 217 GyNvcIfAYGQTGSGKTyTM 236 (1186)
....+|+-.|.+|||||+.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34456778899999999766
No 335
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.65 E-value=20 Score=42.35 Aligned_cols=50 Identities=26% Similarity=0.344 Sum_probs=29.3
Q ss_pred eeecceeeCCCCChhhHHhch-HHhHh-hhcC--C--ccEEEEeeccCCCCccccc
Q 001022 187 DFEFDRVYGPHVGQAELFSDV-QPFVQ-SALD--G--YNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 187 ~FtFD~VF~p~asQeeVFeeV-~PLV~-svLd--G--yNvcIfAYGQTGSGKTyTM 236 (1186)
..+||.|-+-+.--+++.+.| -|+.. ..+. | .--.|+-||+.|+|||++.
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 356777766554444444443 34322 1222 2 3346899999999999754
No 336
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=23.44 E-value=25 Score=35.52 Aligned_cols=16 Identities=38% Similarity=0.395 Sum_probs=13.8
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
+|+-.|.+|||||...
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5778999999999765
No 337
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=23.32 E-value=2.3e+02 Score=23.18 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 553 LRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKI 585 (1186)
Q Consensus 553 L~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeI 585 (1186)
|..+..++..+..+++..+.-++.++.+|++.+
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 344444444445555555555666666666654
No 338
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.22 E-value=4.5e+02 Score=24.33 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001022 570 QIQQRDSTIKTLQAKINSIESQRNEA 595 (1186)
Q Consensus 570 qiqq~e~eIe~LqqeIeeLe~qLke~ 595 (1186)
.+..+...+..++.++..++..+...
T Consensus 18 ~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 18 ERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444555666666666555443
No 339
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=23.14 E-value=53 Score=36.08 Aligned_cols=18 Identities=33% Similarity=0.361 Sum_probs=14.2
Q ss_pred EEEEeeccCCCCcccccc
Q 001022 220 VSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 220 vcIfAYGQTGSGKTyTM~ 237 (1186)
.+|...|.+|+|||.++.
T Consensus 99 ~vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEEECSSCSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 355556999999999883
No 340
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=22.98 E-value=27 Score=44.39 Aligned_cols=31 Identities=10% Similarity=0.313 Sum_probs=0.0
Q ss_pred hhhccC-ChhhhHHHHHHHHhhcccccccccCC
Q 001022 915 ALFVHT-PAGELQRQIRSWLAENFEFLSVTGDD 946 (1186)
Q Consensus 915 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1186)
+..|.| |.|.. .+.+-|=.=.|.|..+--.+
T Consensus 897 ~~~~~~~~~~~~-~~~~kw~~~~~~~~~~~~~~ 928 (936)
T 4a2w_A 897 SFVMESTATGTQ-MDFQKWKSINSSLKNFDVEE 928 (936)
T ss_dssp ---------------------------------
T ss_pred eEEEEecCCCce-eeccccccCCcCcCCCCHHH
Confidence 445678 88887 55899988777776554333
No 341
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=22.96 E-value=29 Score=39.81 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=13.5
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3678899999999885
No 342
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=22.87 E-value=27 Score=33.57 Aligned_cols=16 Identities=19% Similarity=0.059 Sum_probs=13.5
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999765
No 343
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=22.78 E-value=26 Score=34.26 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=13.8
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
.|+-.|..|||||+..
T Consensus 5 ~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSS 20 (192)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888999999999854
No 344
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=22.76 E-value=19 Score=40.12 Aligned_cols=19 Identities=42% Similarity=0.522 Sum_probs=14.9
Q ss_pred CCccEEEEeeccCCCCccccc
Q 001022 216 DGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 216 dGyNvcIfAYGQTGSGKTyTM 236 (1186)
.|.+ +.-.|+||||||.++
T Consensus 170 ~g~~--v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGKN--VIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTCC--EEEEESTTSCHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHH
Confidence 4665 455799999999887
No 345
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=22.63 E-value=31 Score=42.74 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=20.0
Q ss_pred CCccEEEEeeccCCCCccccc
Q 001022 216 DGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 216 dGyNvcIfAYGQTGSGKTyTM 236 (1186)
++.|-||+.-|.+|||||.+.
T Consensus 91 ~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 91 SQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 699999999999999999987
No 346
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=22.51 E-value=23 Score=44.34 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=27.2
Q ss_pred CCCCChhhHHhchHHhHhhhcCCccEEEEeeccCCCCccccc
Q 001022 195 GPHVGQAELFSDVQPFVQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 195 ~p~asQeeVFeeV~PLV~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
.+..-|.+++..+ ....-.|..-.++..|+||||||...
T Consensus 368 ~lt~~Q~~ai~~I---~~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 368 KLTNAQKRAHQEI---RNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp CCCHHHHHHHHHH---HHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred CCCHHHHHHHHHH---HhhccccCCCcEEEEcCCCCCHHHHH
Confidence 5666788877654 23334455455778899999999875
No 347
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=22.50 E-value=5.3e+02 Score=27.34 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhH
Q 001022 62 STKVQRLKDEIKFVKEDYLELRQEATDLQEYSNA--------KIDRVTRYLGVLADKTRKL 114 (1186)
Q Consensus 62 ~~~v~~Lk~~l~~~~~~~~~Lr~e~~d~q~~~~~--------~l~~v~~~l~~L~~~~~~l 114 (1186)
...+..+++++..+..++..+.++..++...+.. +-+=..+.+.+|-+|..++
T Consensus 131 ~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KI 191 (213)
T 1ik9_A 131 LDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKI 191 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4444455555555555555555444443322211 1222344566665554443
No 348
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=22.48 E-value=1.5e+02 Score=26.41 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 548 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 548 E~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe~qL 592 (1186)
+.+.+|..++.++...... ...++..|+..+..|..++
T Consensus 29 ~~i~~LE~~v~~le~~~~~-------l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSS-------TTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 3444555555554433333 3445555555555555444
No 349
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=22.39 E-value=24 Score=34.69 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=13.6
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
+..-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5568899999999876
No 350
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=22.33 E-value=2.9e+02 Score=23.84 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 550 NAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTL 581 (1186)
Q Consensus 550 ~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~L 581 (1186)
...+..++.++.....+++.++..++.++..|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333333333333
No 351
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=22.32 E-value=26 Score=37.19 Aligned_cols=15 Identities=47% Similarity=0.592 Sum_probs=12.9
Q ss_pred EEEeeccCCCCcccc
Q 001022 221 SIFAYGQTHSGKTHT 235 (1186)
Q Consensus 221 cIfAYGQTGSGKTyT 235 (1186)
.|+-.|++|||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 477899999999974
No 352
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=21.76 E-value=26 Score=34.19 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=14.2
Q ss_pred EEEEeeccCCCCccccc
Q 001022 220 VSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 220 vcIfAYGQTGSGKTyTM 236 (1186)
.+|+-.|..|||||+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35777899999999865
No 353
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=21.71 E-value=22 Score=36.84 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=12.5
Q ss_pred EEeeccCCCCccccc
Q 001022 222 IFAYGQTHSGKTHTM 236 (1186)
Q Consensus 222 IfAYGQTGSGKTyTM 236 (1186)
+.-.|++|||||..+
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999887
No 354
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=21.60 E-value=4.8e+02 Score=24.06 Aligned_cols=42 Identities=10% Similarity=0.258 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 548 EQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1186)
Q Consensus 548 E~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe 589 (1186)
+++.+.+........+.++.+.+.+.+..+++.++.++++|+
T Consensus 31 EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 31 REMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555555566666777777777765
No 355
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=21.41 E-value=29 Score=33.94 Aligned_cols=17 Identities=24% Similarity=0.469 Sum_probs=14.1
Q ss_pred EEEEeeccCCCCccccc
Q 001022 220 VSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 220 vcIfAYGQTGSGKTyTM 236 (1186)
..|+-.|..|||||+..
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999764
No 356
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=21.38 E-value=34 Score=42.89 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=20.0
Q ss_pred CCccEEEEeeccCCCCccccc
Q 001022 216 DGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 216 dGyNvcIfAYGQTGSGKTyTM 236 (1186)
++.|-||+..|.+|||||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 699999999999999999987
No 357
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.29 E-value=2.4e+02 Score=32.60 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 546 EKEQNAQLRNQVAQLLQLEQEQKMQIQQRDSTIKTLQAKINSIE 589 (1186)
Q Consensus 546 ekE~~~qL~~ql~qLl~~eeE~k~qiqq~e~eIe~LqqeIeeLe 589 (1186)
++++..++...+.++.....+++.++.+.+.....|..++.+|+
T Consensus 15 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 15 LKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444444444444444444455555555556666666666665
No 358
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=21.28 E-value=27 Score=33.85 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=13.5
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
.|+-.|..|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4777999999999865
No 359
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=21.17 E-value=34 Score=42.93 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=19.9
Q ss_pred CCccEEEEeeccCCCCccccc
Q 001022 216 DGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 216 dGyNvcIfAYGQTGSGKTyTM 236 (1186)
++.|-||+.-|.+|||||.+.
T Consensus 137 ~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCceehH
Confidence 699999999999999999986
No 360
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=21.12 E-value=23 Score=36.40 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=13.7
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
.|.-.|++|||||.++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 3567899999999987
No 361
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=21.08 E-value=23 Score=36.66 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=15.4
Q ss_pred EEEeeccCCCCccccccc
Q 001022 221 SIFAYGQTHSGKTHTMEG 238 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM~G 238 (1186)
.++-||..|||||..+.+
T Consensus 10 i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 678899999999988853
No 362
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=21.08 E-value=3.6e+02 Score=22.85 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 57 SKQALSTKVQRLKDEIKFVKEDYLELRQEAT 87 (1186)
Q Consensus 57 ~k~~l~~~v~~Lk~~l~~~~~~~~~Lr~e~~ 87 (1186)
+-++|.++|+.|..++..+..+...++.++.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466888888888888888887777776655
No 363
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=21.06 E-value=34 Score=44.16 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=17.5
Q ss_pred hHhhhcCCccEEEEeeccCCCCccc
Q 001022 210 FVQSALDGYNVSIFAYGQTHSGKTH 234 (1186)
Q Consensus 210 LV~svLdGyNvcIfAYGQTGSGKTy 234 (1186)
.+..+++|.|+ +..|+||||||.
T Consensus 64 ai~~il~g~dv--lv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKESF--AATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCCE--ECCCCBTSCSHH
T ss_pred HHHHHHhCCCE--EEEcCCCCCHHH
Confidence 44556788774 678899999994
No 364
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=21.01 E-value=32 Score=39.82 Aligned_cols=19 Identities=21% Similarity=0.078 Sum_probs=14.4
Q ss_pred CCccEEEEeeccCCCCccccc
Q 001022 216 DGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 216 dGyNvcIfAYGQTGSGKTyTM 236 (1186)
.|.| ++..|+||||||...
T Consensus 20 ~~~~--vlv~a~TGsGKT~~~ 38 (459)
T 2z83_A 20 KRQM--TVLDLHPGSGKTRKI 38 (459)
T ss_dssp TTCE--EEECCCTTSCTTTTH
T ss_pred cCCc--EEEECCCCCCHHHHH
Confidence 4544 466789999999884
No 365
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=20.99 E-value=6.4e+02 Score=25.27 Aligned_cols=20 Identities=5% Similarity=0.239 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001022 573 QRDSTIKTLQAKINSIESQR 592 (1186)
Q Consensus 573 q~e~eIe~LqqeIeeLe~qL 592 (1186)
..+..|..|+.+|..+-..+
T Consensus 98 ~aE~k~~eLEeeL~~~~~nl 117 (147)
T 2b9c_A 98 LSEGKCAELEEELKTVTNNL 117 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 366
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=20.94 E-value=29 Score=37.20 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=15.3
Q ss_pred EEEEeeccCCCCccccc
Q 001022 220 VSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 220 vcIfAYGQTGSGKTyTM 236 (1186)
.+++-||+.|+|||..+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 48889999999999887
No 367
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=20.78 E-value=36 Score=41.34 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=15.9
Q ss_pred hcCCccEEEEeeccCCCCccccc
Q 001022 214 ALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 214 vLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
+.+|.| ++..|+||||||...
T Consensus 43 ~~~~~~--~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 43 LLEGNR--LLLTSPTGSGKTLIA 63 (715)
T ss_dssp TTTTCC--EEEECCTTSCHHHHH
T ss_pred hcCCCc--EEEEcCCCCcHHHHH
Confidence 345665 567889999999875
No 368
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=20.76 E-value=41 Score=37.44 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=14.6
Q ss_pred EEEEeeccCCCCcccccc
Q 001022 220 VSIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 220 vcIfAYGQTGSGKTyTM~ 237 (1186)
.+|.-.|++|+|||+|+.
T Consensus 106 ~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 456666999999999983
No 369
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=20.73 E-value=29 Score=34.07 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=14.6
Q ss_pred EEEEeeccCCCCccccc
Q 001022 220 VSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 220 vcIfAYGQTGSGKTyTM 236 (1186)
..|+-.|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999864
No 370
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=20.70 E-value=29 Score=36.97 Aligned_cols=21 Identities=19% Similarity=0.582 Sum_probs=17.3
Q ss_pred CCccEEEEeeccCCCCccccc
Q 001022 216 DGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 216 dGyNvcIfAYGQTGSGKTyTM 236 (1186)
.|++..|...|.+|+|||..+
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHH
Confidence 588999999999999999755
No 371
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=20.50 E-value=36 Score=43.10 Aligned_cols=21 Identities=33% Similarity=0.411 Sum_probs=19.9
Q ss_pred CCccEEEEeeccCCCCccccc
Q 001022 216 DGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 216 dGyNvcIfAYGQTGSGKTyTM 236 (1186)
++.|-||+.-|.+|||||.+.
T Consensus 166 ~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEeCCCCCCchhhH
Confidence 699999999999999999986
No 372
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=20.50 E-value=40 Score=40.93 Aligned_cols=24 Identities=13% Similarity=-0.045 Sum_probs=19.4
Q ss_pred HhhhcCCccEEEEeeccCCCCccccc
Q 001022 211 VQSALDGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 211 V~svLdGyNvcIfAYGQTGSGKTyTM 236 (1186)
+..++.|.|+ +..++||||||...
T Consensus 180 i~~l~~g~dv--lv~a~TGSGKT~~~ 203 (618)
T 2whx_A 180 EDIFRKKRLT--IMDLHPGAGKTKRI 203 (618)
T ss_dssp GGGGSTTCEE--EECCCTTSSTTTTH
T ss_pred HHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 6667788875 56789999999984
No 373
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=20.47 E-value=4.9e+02 Score=23.70 Aligned_cols=19 Identities=11% Similarity=0.324 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001022 489 EIQDLKQEILGLRQALKEA 507 (1186)
Q Consensus 489 eI~eLkeEI~~Lr~~L~~~ 507 (1186)
+|..|+..+..|+..+.+.
T Consensus 4 eie~L~~q~~~Le~~l~e~ 22 (86)
T 1x8y_A 4 QLSQLQCQLAAKEAKLRDL 22 (86)
T ss_dssp --------CTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554443
No 374
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=20.44 E-value=35 Score=44.06 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=0.0
Q ss_pred HHhchHHhHhhhc-CCccEEEEeeccCCCCcccc
Q 001022 203 LFSDVQPFVQSAL-DGYNVSIFAYGQTHSGKTHT 235 (1186)
Q Consensus 203 VFeeV~PLV~svL-dGyNvcIfAYGQTGSGKTyT 235 (1186)
||.-......+.+ ++.|-||+..|.+|||||.+
T Consensus 155 ifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~ 188 (1010)
T 1g8x_A 155 IFAISDVAYRSMLDDRQNQSLLITGESGAGKTEN 188 (1010)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchH
No 375
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=20.39 E-value=3.2e+02 Score=22.40 Aligned_cols=19 Identities=32% Similarity=0.216 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001022 537 YMLADKHKIEKEQNAQLRN 555 (1186)
Q Consensus 537 ~~L~ek~k~ekE~~~qL~~ 555 (1186)
..+.+++..++..+-++..
T Consensus 6 aylrkkiarlkkdnlqler 24 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLER 24 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhh
Confidence 3444444444444444443
No 376
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=20.39 E-value=51 Score=36.13 Aligned_cols=20 Identities=35% Similarity=0.381 Sum_probs=16.2
Q ss_pred CccEEEEeeccCCCCccccc
Q 001022 217 GYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 217 GyNvcIfAYGQTGSGKTyTM 236 (1186)
+....|.-.|.+|||||+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 45567778899999999876
No 377
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=20.36 E-value=6.9e+02 Score=25.41 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001022 489 EIQDLKQEILGLRQALKEANDQCVLLYNEVQ 519 (1186)
Q Consensus 489 eI~eLkeEI~~Lr~~L~~~~~q~~~l~~E~q 519 (1186)
++.++..++.+-......+..++..+..++.
T Consensus 22 EvaR~E~dLEraEERae~aE~k~~eLEeeL~ 52 (155)
T 2efr_A 22 EVARLKKLLERAEERAELSEGKSAELEEELK 52 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666666666666666666665655544
No 378
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=20.27 E-value=33 Score=38.04 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=15.4
Q ss_pred cEEEEeeccCCCCccccc
Q 001022 219 NVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 219 NvcIfAYGQTGSGKTyTM 236 (1186)
...|+-.|++|||||.|+
T Consensus 104 ~~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 346778899999999998
No 379
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=20.22 E-value=32 Score=33.79 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=13.7
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
.|+-.|..|||||+..
T Consensus 6 ~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999764
No 380
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=20.18 E-value=52 Score=41.42 Aligned_cols=51 Identities=22% Similarity=0.341 Sum_probs=34.3
Q ss_pred ceeecceeeCCCCChhhHHhch-HHhHh-hhcCCcc----EEEEeeccCCCCccccc
Q 001022 186 KDFEFDRVYGPHVGQAELFSDV-QPFVQ-SALDGYN----VSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 186 k~FtFD~VF~p~asQeeVFeeV-~PLV~-svLdGyN----vcIfAYGQTGSGKTyTM 236 (1186)
...+||.|-+-+..-+++.+.| -|+-. .++.++. ..|+-||+.|+|||...
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHH
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 3467888887776666665554 35432 2444433 46999999999999765
No 381
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=20.16 E-value=28 Score=35.03 Aligned_cols=16 Identities=44% Similarity=0.299 Sum_probs=13.4
Q ss_pred EEEeeccCCCCccccc
Q 001022 221 SIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM 236 (1186)
.|.-.|++|||||+.+
T Consensus 8 ~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 8 VIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999876
No 382
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=20.13 E-value=33 Score=33.66 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=13.8
Q ss_pred EEEeeccCCCCcccccc
Q 001022 221 SIFAYGQTHSGKTHTME 237 (1186)
Q Consensus 221 cIfAYGQTGSGKTyTM~ 237 (1186)
..+-||++|||||..+.
T Consensus 25 ~~~I~G~NGsGKStil~ 41 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLD 41 (149)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 34679999999998763
No 383
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=20.07 E-value=37 Score=43.73 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=20.0
Q ss_pred CCccEEEEeeccCCCCccccc
Q 001022 216 DGYNVSIFAYGQTHSGKTHTM 236 (1186)
Q Consensus 216 dGyNvcIfAYGQTGSGKTyTM 236 (1186)
++.|-||+.-|.+|||||.+.
T Consensus 143 ~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 143 DREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp HCCCEEEEEECBTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 699999999999999999987
Done!