BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001024
(1185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N5X|A Chain A, Xanthine Dehydrogenase From Bovine Milk With Inhibitor Tei-
6720 Bound
pdb|1N5X|B Chain B, Xanthine Dehydrogenase From Bovine Milk With Inhibitor Tei-
6720 Bound
Length = 1331
Score = 430 bits (1105), Expect = e-120, Method: Compositional matrix adjust.
Identities = 328/1114 (29%), Positives = 537/1114 (48%), Gaps = 101/1114 (9%)
Query: 43 VVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHAS 102
V+LSKY+ D++ F+ ++CL +C+++ +TT EG+G++KT HP+ +R A H S
Sbjct: 51 TVMLSKYDRLQDKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGS 110
Query: 103 QCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADA 162
QCGFCTPG+ MS+++ L ++PEP T+ E E A GNLCRCTGYRPI
Sbjct: 111 QCGFCTPGIVMSMYTLL-----RNQPEP-------TVEEIEDAFQGNLCRCTGYRPILQG 158
Query: 163 CKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGE------LCRFPLF----LKK 212
++FA + N+ K+ L P N E + P+F L+
Sbjct: 159 FRTFAKNGGCCGGNGNNPNCCMNQKKDHTVTLSPSLFNPEEFMPLDPTQEPIFPPELLRL 218
Query: 213 ENSSAMLLDVKGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEH--YDK 270
++ L +G + I L+ +L+ + +KLV GNT +G + ++ +
Sbjct: 219 KDVPPKQLRFEGERVTWIQASTLKELLDL--KAQHPEAKLVVGNTEIGIEMKFKNQLFPM 276
Query: 271 YIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKI 330
I +IPEL+ + GI GA +S + L E + ++ VF+ + +
Sbjct: 277 IICPAWIPELNAVEHGPEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWF 336
Query: 331 ASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMT-GQKCEKLMLEEFL---E 386
A + +++ AS+GGN++ A SD+ V + +G + I++ G + M F
Sbjct: 337 AGKQVKSVASLGGNIITASPI---SDLNPVFMASGTKLTIVSRGTRRTVPMDHTFFPSYR 393
Query: 387 RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVS 446
+ L ILLS+EIP + F ++ A R + + +
Sbjct: 394 KTLLGPEEILLSIEIPY----------SREDEFFSAFKQASR-REDDIAKVTCGMRVLFQ 442
Query: 447 PCKTGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRD--SVVP 504
P ++V L +G + I A + + K N +L + L + S+ P
Sbjct: 443 P----GSMQVKELALCYGGMADR-TISALKTTQKQLSKFWNEKLLQDVCAGLAEELSLSP 497
Query: 505 EDGTSIPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCG-----YSNNVSLKDSHVQQNH 559
+ + +R +L + F ++F+ ++ + S+D CG Y++ L H N
Sbjct: 498 DAPGGMIEFRRTLTLSFFFKFYLTVLKKLGKDSKD-KCGKLDPTYTSATLLFQKHPPANI 556
Query: 560 KQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYG 619
+ F E VP S + V G P+ AA+QASGEA+Y DDIP N L+
Sbjct: 557 QLFQE--VPNGQSKEDTV----------GRPLPHLAAAMQASGEAVYCDDIPRYENELFL 604
Query: 620 AFIYSTKPLARIKGIEF-KSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELT 678
+ ST+ A+IK I+ +++ VP V LS DIP G G +F E +FA +
Sbjct: 605 RLVTSTRAHAKIKSIDVSEAQKVPGFV-CFLSADDIP-GSNETG---LFNDETVFAKDTV 659
Query: 679 RCAGQPVAFVVADSQKNXXXXXXXXXXXYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPK 738
C G + VVAD+ ++ YE +L P I+++E+A+ +S + +
Sbjct: 660 TCVGHIIGAVVADTPEHAERAAHVVKVTYE--DL-PAIITIEDAIKNNSFYGSELKIEK- 715
Query: 739 PVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPESAH 797
GD+ KG +EAD+ +++ E+ +G Q +FY+ET +A+P E+ + ++ S Q
Sbjct: 716 --GDLKKGFSEADN-VVSGELYIGGQDHFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQ 772
Query: 798 ATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDM 857
+ +A+ LG+P + + V +R+GG FGGK ++ V+ A ALAAYK PVR + R DM
Sbjct: 773 SFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAAYKTGHPVRCMLDRNEDM 832
Query: 858 IMVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVS-PIMPSNMIGALKKYDWGA 916
++ GGRHP Y VGF G I AL+++ +AG S D+S IM + Y
Sbjct: 833 LITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMDNCYKIPN 892
Query: 917 LHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLN 976
+ ++C+TNL S +A R G Q FIAE + VA T + + VR N++ L
Sbjct: 893 IRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLT 952
Query: 977 LFYESSAGEYAEYTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVT- 1035
F + G +++P WD+ SS + R + +FN+ N W+K+G+C +P ++
Sbjct: 953 HFNQRLEG----FSVPRCWDECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKFGISF 1008
Query: 1036 ----LRSTPGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKV 1091
L + + +DGSV+V GG EMGQGL TK+ Q+A+ AL + K+
Sbjct: 1009 TVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIP--------ISKI 1060
Query: 1092 RVVQADTLSVIQGGFTAGSTTSEASCQVVRDCCN 1125
+ + T +V TA S +++ Q V + C
Sbjct: 1061 YISETSTNTVPNSSPTAASVSTDIYGQAVYEACQ 1094
>pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1FO4|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1V97|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1V97|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1VDV|A Chain A, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|1VDV|B Chain B, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|3BDJ|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
A Covalently Bound Oxipurinol Inhibitor
pdb|3BDJ|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
A Covalently Bound Oxipurinol Inhibitor
pdb|3AM9|A Chain A, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AM9|B Chain B, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AMZ|A Chain A, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AMZ|B Chain B, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AX7|A Chain A, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX7|B Chain B, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX9|A Chain A, Bovine Xanthone Oxidase, Protease Cleaved Form
pdb|3AX9|B Chain B, Bovine Xanthone Oxidase, Protease Cleaved Form
Length = 1332
Score = 430 bits (1105), Expect = e-120, Method: Compositional matrix adjust.
Identities = 328/1114 (29%), Positives = 537/1114 (48%), Gaps = 101/1114 (9%)
Query: 43 VVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHAS 102
V+LSKY+ D++ F+ ++CL +C+++ +TT EG+G++KT HP+ +R A H S
Sbjct: 52 TVMLSKYDRLQDKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGS 111
Query: 103 QCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADA 162
QCGFCTPG+ MS+++ L ++PEP T+ E E A GNLCRCTGYRPI
Sbjct: 112 QCGFCTPGIVMSMYTLL-----RNQPEP-------TVEEIEDAFQGNLCRCTGYRPILQG 159
Query: 163 CKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGE------LCRFPLF----LKK 212
++FA + N+ K+ L P N E + P+F L+
Sbjct: 160 FRTFAKNGGCCGGNGNNPNCCMNQKKDHTVTLSPSLFNPEEFMPLDPTQEPIFPPELLRL 219
Query: 213 ENSSAMLLDVKGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEH--YDK 270
++ L +G + I L+ +L+ + +KLV GNT +G + ++ +
Sbjct: 220 KDVPPKQLRFEGERVTWIQASTLKELLDL--KAQHPEAKLVVGNTEIGIEMKFKNQLFPM 277
Query: 271 YIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKI 330
I +IPEL+ + GI GA +S + L E + ++ VF+ + +
Sbjct: 278 IICPAWIPELNAVEHGPEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWF 337
Query: 331 ASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMT-GQKCEKLMLEEFL---E 386
A + +++ AS+GGN++ A SD+ V + +G + I++ G + M F
Sbjct: 338 AGKQVKSVASLGGNIITASPI---SDLNPVFMASGTKLTIVSRGTRRTVPMDHTFFPSYR 394
Query: 387 RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVS 446
+ L ILLS+EIP + F ++ A R + + +
Sbjct: 395 KTLLGPEEILLSIEIPY----------SREDEFFSAFKQASR-REDDIAKVTCGMRVLFQ 443
Query: 447 PCKTGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRD--SVVP 504
P ++V L +G + I A + + K N +L + L + S+ P
Sbjct: 444 P----GSMQVKELALCYGGMADR-TISALKTTQKQLSKFWNEKLLQDVCAGLAEELSLSP 498
Query: 505 EDGTSIPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCG-----YSNNVSLKDSHVQQNH 559
+ + +R +L + F ++F+ ++ + S+D CG Y++ L H N
Sbjct: 499 DAPGGMIEFRRTLTLSFFFKFYLTVLKKLGKDSKD-KCGKLDPTYTSATLLFQKHPPANI 557
Query: 560 KQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYG 619
+ F E VP S + V G P+ AA+QASGEA+Y DDIP N L+
Sbjct: 558 QLFQE--VPNGQSKEDTV----------GRPLPHLAAAMQASGEAVYCDDIPRYENELFL 605
Query: 620 AFIYSTKPLARIKGIEF-KSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELT 678
+ ST+ A+IK I+ +++ VP V LS DIP G G +F E +FA +
Sbjct: 606 RLVTSTRAHAKIKSIDVSEAQKVPGFV-CFLSADDIP-GSNETG---LFNDETVFAKDTV 660
Query: 679 RCAGQPVAFVVADSQKNXXXXXXXXXXXYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPK 738
C G + VVAD+ ++ YE +L P I+++E+A+ +S + +
Sbjct: 661 TCVGHIIGAVVADTPEHAERAAHVVKVTYE--DL-PAIITIEDAIKNNSFYGSELKIEK- 716
Query: 739 PVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPESAH 797
GD+ KG +EAD+ +++ E+ +G Q +FY+ET +A+P E+ + ++ S Q
Sbjct: 717 --GDLKKGFSEADN-VVSGELYIGGQDHFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQ 773
Query: 798 ATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDM 857
+ +A+ LG+P + + V +R+GG FGGK ++ V+ A ALAAYK PVR + R DM
Sbjct: 774 SFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAAYKTGHPVRCMLDRNEDM 833
Query: 858 IMVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVS-PIMPSNMIGALKKYDWGA 916
++ GGRHP Y VGF G I AL+++ +AG S D+S IM + Y
Sbjct: 834 LITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMDNCYKIPN 893
Query: 917 LHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLN 976
+ ++C+TNL S +A R G Q FIAE + VA T + + VR N++ L
Sbjct: 894 IRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLT 953
Query: 977 LFYESSAGEYAEYTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVT- 1035
F + G +++P WD+ SS + R + +FN+ N W+K+G+C +P ++
Sbjct: 954 HFNQRLEG----FSVPRCWDECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKFGISF 1009
Query: 1036 ----LRSTPGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKV 1091
L + + +DGSV+V GG EMGQGL TK+ Q+A+ AL + K+
Sbjct: 1010 TVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIP--------ISKI 1061
Query: 1092 RVVQADTLSVIQGGFTAGSTTSEASCQVVRDCCN 1125
+ + T +V TA S +++ Q V + C
Sbjct: 1062 YISETSTNTVPNSSPTAASVSTDIYGQAVYEACQ 1095
>pdb|3UNA|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nad Bound
pdb|3UNA|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nad Bound
pdb|3UNC|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNC|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNI|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nadh Bound
pdb|3UNI|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nadh Bound
Length = 1332
Score = 426 bits (1095), Expect = e-119, Method: Compositional matrix adjust.
Identities = 327/1114 (29%), Positives = 536/1114 (48%), Gaps = 101/1114 (9%)
Query: 43 VVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHAS 102
V+LSKY+ D++ F+ ++CL +C+++ +TT EG+G++KT HP+ +R A H S
Sbjct: 52 TVMLSKYDRLQDKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGS 111
Query: 103 QCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADA 162
QCGFCTPG+ MS+++ L ++PEP T+ E E A GNLCRCTGYRPI
Sbjct: 112 QCGFCTPGIVMSMYTLL-----RNQPEP-------TVEEIEDAFQGNLCRCTGYRPILQG 159
Query: 163 CKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGE------LCRFPLF----LKK 212
++FA + N+ K+ L P N E + P+F L+
Sbjct: 160 FRTFAKNGGCCGGNGNNPNCCMNQKKDHTVTLSPSLFNPEEFMPLDPTQEPIFPPELLRL 219
Query: 213 ENSSAMLLDVKGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEH--YDK 270
++ L +G + I L+ +L+ + +KLV GNT +G + ++ +
Sbjct: 220 KDVPPKQLRFEGERVTWIQASTLKELLDL--KAQHPEAKLVVGNTEIGIEMKFKNQLFPM 277
Query: 271 YIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKI 330
I +IPEL+ + GI GA +S + L E + ++ VF+ + +
Sbjct: 278 IICPAWIPELNAVEHGPEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWF 337
Query: 331 ASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMT-GQKCEKLMLEEFL---E 386
A + +++ AS+GGN++ A SD+ V + +G + I++ G + M F
Sbjct: 338 AGKQVKSVASLGGNIITASPI---SDLNPVFMASGTKLTIVSRGTRRTVPMDHTFFPSYR 394
Query: 387 RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVS 446
+ L ILLS+EIP + F ++ A R + + +
Sbjct: 395 KTLLGPEEILLSIEIPY----------SREDEFFSAFKQASR-REDDIAKVTCGMRVLFQ 443
Query: 447 PCKTGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRD--SVVP 504
P ++V L +G + I A + + K N +L + L + S+ P
Sbjct: 444 P----GSMQVKELALCYGGMADR-TISALKTTQKQLSKFWNEKLLQDVCAGLAEELSLSP 498
Query: 505 EDGTSIPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCG-----YSNNVSLKDSHVQQNH 559
+ + +R +L + F ++F+ ++ + S+D CG Y++ L N
Sbjct: 499 DAPGGMIEFRRTLTLSFFFKFYLTVLKKLGKDSKD-KCGKLDPTYTSATLLFQKDPPANI 557
Query: 560 KQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYG 619
+ F E VP S + V G P+ AA+QASGEA+Y DDIP N L+
Sbjct: 558 QLFQE--VPNGQSKEDTV----------GRPLPHLAAAMQASGEAVYCDDIPRYENELFL 605
Query: 620 AFIYSTKPLARIKGIEF-KSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELT 678
+ ST+ A+IK I+ +++ VP V LS DIP G G +F E +FA +
Sbjct: 606 RLVTSTRAHAKIKSIDVSEAQKVPGFV-CFLSADDIP-GSNETG---LFNDETVFAKDTV 660
Query: 679 RCAGQPVAFVVADSQKNXXXXXXXXXXXYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPK 738
C G + VVAD+ ++ YE +L P I+++E+A+ +S + +
Sbjct: 661 TCVGHIIGAVVADTPEHAERAAHVVKVTYE--DL-PAIITIEDAIKNNSFYGSELKIEK- 716
Query: 739 PVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPESAH 797
GD+ KG +EAD+ +++ E+ +G Q +FY+ET +A+P E+ + ++ S Q
Sbjct: 717 --GDLKKGFSEADN-VVSGELYIGGQDHFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQ 773
Query: 798 ATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDM 857
+ +A+ LG+P + + V +R+GG FGGK ++ V+ A ALAAYK PVR + R DM
Sbjct: 774 SFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAAYKTGHPVRCMLDRNEDM 833
Query: 858 IMVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVS-PIMPSNMIGALKKYDWGA 916
++ GGRHP Y VGF G I AL+++ +AG S D+S IM + Y
Sbjct: 834 LITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMDNCYKIPN 893
Query: 917 LHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLN 976
+ ++C+TNL S +A R G Q FIAE + VA T + + VR N++ L
Sbjct: 894 IRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLT 953
Query: 977 LFYESSAGEYAEYTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVT- 1035
F + G +++P WD+ SS + R + +FN+ N W+K+G+C +P ++
Sbjct: 954 HFNQRLEG----FSVPRCWDECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKFGISF 1009
Query: 1036 ----LRSTPGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKV 1091
L + + +DGSV+V GG EMGQGL TK+ Q+A+ AL + K+
Sbjct: 1010 TVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIP--------ISKI 1061
Query: 1092 RVVQADTLSVIQGGFTAGSTTSEASCQVVRDCCN 1125
+ + T +V TA S +++ Q V + C
Sbjct: 1062 YISETSTNTVPNSSPTAASVSTDIYGQAVYEACQ 1095
>pdb|2E3T|A Chain A, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
pdb|2E3T|B Chain B, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
Length = 1331
Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust.
Identities = 316/1112 (28%), Positives = 535/1112 (48%), Gaps = 97/1112 (8%)
Query: 43 VVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHAS 102
V++SKY+ +++ F++++CL +CS++ +TT EG+GN++ HP+ +R A H S
Sbjct: 52 TVMISKYDRLQNKIVHFSVNACLAPICSLHHVAVTTVEGIGNTQK-LHPVQERIARSHGS 110
Query: 103 QCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADA 162
QCGFCTPG+ MS+++ L ++PEP T+ E E A GNLCRCTGYRPI
Sbjct: 111 QCGFCTPGIVMSMYTLL-----RNQPEP-------TVEEIENAFQGNLCRCTGYRPILQG 158
Query: 163 CKSFAADVDIEDLGI---NSFWAKGESKEVKIS-------RLPPYKHNGELCRFPLFLKK 212
++FA D N + + + V +S P E P L+
Sbjct: 159 FRTFAKDGGCCGGSGNNPNCCMNQTKDQTVSLSPSLFNPEDFKPLDPTQEPIFPPELLRL 218
Query: 213 ENSSAMLLDVKG---SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEH-- 267
+++ L +G +W +++EL ++ + +KLV GNT +G + ++
Sbjct: 219 KDTPQKKLRFEGERVTWIQASTMEELLDL-----KAQHPDAKLVVGNTEIGIEMKFKNML 273
Query: 268 YDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHM 327
+ + +IPEL+ + GI GA+ +S L EE + + VF+ + +
Sbjct: 274 FPLIVCPAWIPELNSVVHGPEGISFGASCPLSLVESVLAEEIAKLPEQKTEVFRGVMEQL 333
Query: 328 EKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMT-GQKCEKLMLEEFL- 385
+A + +++ AS+GGN++ A SD+ V + +GA + +++ G + M F
Sbjct: 334 RALAGKQVKSVASIGGNIITASPI---SDLNPVFMASGAKLTLVSRGTRRTVRMDHTFFP 390
Query: 386 --ERPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLA 443
+ L ILLS+EIP + F ++ A R + + + +
Sbjct: 391 GYRKTLLRPEEILLSIEIPY----------SKEGEFFSAFKQASR-REDDIAKVTSGMRV 439
Query: 444 EVSPCKTGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRD--S 501
P I V L FG + I A + K N +L L +
Sbjct: 440 LFKP----GTIEVQELSLCFGGMADR-TISALKTTPKQLSKSWNEELLQSVCAGLAEELQ 494
Query: 502 VVPEDGTSIPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLKDSHVQQNHKQ 561
+ P+ + +R +L + F ++F+ ++ + + +CG + + + Q
Sbjct: 495 LAPDAPGGMVEFRRTLTLSFFFKFYLTVLQKLGRADLEDMCGKLDPTFASATLLFQKDP- 553
Query: 562 FDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAF 621
P + ++V + E VG P+ A +QASGEA+Y DDIP N L
Sbjct: 554 ------PANVQLFQEVPKDQSEEDMVGRPLPHLAANMQASGEAVYCDDIPRYENELSLRL 607
Query: 622 IYSTKPLARIKGIEF-KSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRC 680
+ ST+ A+I I+ +++ VP V L+ +D+P N + +F E +FA + C
Sbjct: 608 VTSTRAHAKITSIDTSEAKKVPGFV-CFLTAEDVP----NSNATGLFNDETVFAKDEVTC 662
Query: 681 AGQPVAFVVADSQKNXXXXXXXXXXXYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPV 740
G + VVAD+ ++ YE +L P I+++++A++ +S + +
Sbjct: 663 VGHIIGAVVADTPEHAQRAARGVKITYE--DL-PAIITIQDAINNNSFYGSEIKIEK--- 716
Query: 741 GDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPESAHAT 799
GD+ KG +EAD+ +++ E+ +G Q +FY+ET +AVP E + ++ S Q +
Sbjct: 717 GDLKKGFSEADN-VVSGELYIGGQEHFYLETNCTIAVPKGEAGEMELFVSTQNTMKTQSF 775
Query: 800 IARCLGIPEHNVRVITRRVGGAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIM 859
+A+ LG+P++ + V +R+GG FGGK ++ V+TA ALAA+K RPVR + R DM++
Sbjct: 776 VAKMLGVPDNRIVVRVKRMGGGFGGKETRSTVVSTALALAAHKTGRPVRCMLDRDEDMLI 835
Query: 860 VGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVS-PIMPSNMIGALKKYDWGALH 918
GGRHP Y VGF G + AL++ + G + D+S IM + Y +
Sbjct: 836 TGGRHPFLAKYKVGFMKTGTVVALEVAHFSNGGNTEDLSRSIMERALFHMDNAYKIPNIR 895
Query: 919 FDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLF 978
++C+TNLPS +A R G QG IAE + VA T + + VR N++ L F
Sbjct: 896 GTGRICKTNLPSNTAFRGFGGPQGMLIAEYWMSEVAITCGLPAEEVRRKNMYKEGDLTHF 955
Query: 979 YESSAGEYAEYTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVT--- 1035
+ G +TLP WD+ SS + R +++FNR N W+K+G+C +P ++
Sbjct: 956 NQKLEG----FTLPRCWDECIASSQYLARKREVEKFNRENCWKKRGLCIIPTKFGISFTL 1011
Query: 1036 --LRSTPGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRV 1093
L V + +DGSV++ GG EMGQGL TK+ Q+A+ AL K+ +
Sbjct: 1012 PFLNQGGALVHVYTDGSVLLTHGGTEMGQGLHTKMVQVASRALKIPT--------SKIHI 1063
Query: 1094 VQADTLSVIQGGFTAGSTTSEASCQVVRDCCN 1125
+ T +V TA S +++ + Q V + C
Sbjct: 1064 SETSTNTVPNTSPTAASASADLNGQGVYEACQ 1095
>pdb|3AN1|A Chain A, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
pdb|3AN1|B Chain B, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
Length = 1331
Score = 422 bits (1084), Expect = e-118, Method: Compositional matrix adjust.
Identities = 316/1112 (28%), Positives = 534/1112 (48%), Gaps = 97/1112 (8%)
Query: 43 VVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHAS 102
V++SKY+ +++ F++++CL +CS++ +TT EG+GN++ HP+ +R A H S
Sbjct: 52 TVMISKYDRLQNKIVHFSVNACLAPICSLHHVAVTTVEGIGNTQK-LHPVQERIARSHGS 110
Query: 103 QCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADA 162
QCGFCTPG+ MS+++ L ++PEP T+ E E A GNLCRCTGYRPI
Sbjct: 111 QCGFCTPGIVMSMYTLL-----RNQPEP-------TVEEIENAFQGNLCRCTGYRPILQG 158
Query: 163 CKSFAADVDIEDLGI---NSFWAKGESKEVKIS-------RLPPYKHNGELCRFPLFLKK 212
++FA D N + + + V +S P E P L+
Sbjct: 159 FRTFAKDGGCCGGSGNNPNCCMNQTKDQTVSLSPSLFNPEDFKPLDPTQEPIFPPELLRL 218
Query: 213 ENSSAMLLDVKG---SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEH-- 267
+++ L +G +W +++EL ++ + +KLV GNT +G + ++
Sbjct: 219 KDTPQKKLRFEGERVTWIQASTMEELLDL-----KAQHPDAKLVVGNTEIGIEMKFKNML 273
Query: 268 YDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHM 327
+ + +IPEL+ + GI GA+ +S L EE + + VF+ + +
Sbjct: 274 FPLIVCPAWIPELNSVVHGPEGISFGASCPLSLVESVLAEEIAKLPEQKTEVFRGVMEQL 333
Query: 328 EKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMT-GQKCEKLMLEEFL- 385
A + +++ AS+GGN++ A SD+ V + +GA + +++ G + M F
Sbjct: 334 RWFAGKQVKSVASIGGNIITASPI---SDLNPVFMASGAKLTLVSRGTRRTVRMDHTFFP 390
Query: 386 --ERPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLA 443
+ L ILLS+EIP + F ++ A R + + + +
Sbjct: 391 GYRKTLLRPEEILLSIEIPY----------SKEGEFFSAFKQASRREAD-IAKVTSGMRV 439
Query: 444 EVSPCKTGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRD--S 501
P I V L FG + I A + K N +L L +
Sbjct: 440 LFKP----GTIEVQELSLCFGGMADR-TISALKTTPKQLSKSWNEELLQSVCAGLAEELQ 494
Query: 502 VVPEDGTSIPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLKDSHVQQNHKQ 561
+ P+ + +R +L + F ++F+ ++ + + +CG + + + Q
Sbjct: 495 LAPDAPGGMVEFRRTLTLSFFFKFYLTVLQKLGRADLEDMCGKLDPTFASATLLFQKDP- 553
Query: 562 FDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAF 621
P + ++V + E VG P+ A +QASGEA+Y DDIP N L
Sbjct: 554 ------PANVQLFQEVPKDQSEEDMVGRPLPHLAANMQASGEAVYCDDIPRYENELSLRL 607
Query: 622 IYSTKPLARIKGIEF-KSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRC 680
+ ST+ A+I I+ +++ VP V L+ +D+P N + +F E +FA + C
Sbjct: 608 VTSTRAHAKITSIDTSEAKKVPGFV-CFLTAEDVP----NSNATGLFNDETVFAKDEVTC 662
Query: 681 AGQPVAFVVADSQKNXXXXXXXXXXXYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPV 740
G + VVAD+ ++ YE +L P I+++++A++ +S + +
Sbjct: 663 VGHIIGAVVADTPEHAQRAARGVKITYE--DL-PAIITIQDAINNNSFYGSEIKIEK--- 716
Query: 741 GDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPESAHAT 799
GD+ KG +EAD+ +++ E+ +G Q +FY+ET +AVP E + ++ S Q +
Sbjct: 717 GDLKKGFSEADN-VVSGELYIGGQEHFYLETNCTIAVPKGEAGEMELFVSTQNTMKTQSF 775
Query: 800 IARCLGIPEHNVRVITRRVGGAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIM 859
+A+ LG+P++ + V +R+GG FGGK ++ V+TA ALAA+K RPVR + R DM++
Sbjct: 776 VAKMLGVPDNRIVVRVKRMGGGFGGKETRSTVVSTALALAAHKTGRPVRCMLDRDEDMLI 835
Query: 860 VGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVS-PIMPSNMIGALKKYDWGALH 918
GGRHP Y VGF G + AL++ + G + D+S IM + Y +
Sbjct: 836 TGGRHPFLAKYKVGFMKTGTVVALEVAHFSNGGNTEDLSRSIMERALFHMDNAYKIPNIR 895
Query: 919 FDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLF 978
++C+TNLPS +A R G QG IAE + VA T + + VR N++ L F
Sbjct: 896 GTGRICKTNLPSNTAFRGFGGPQGMLIAEYWMSEVAITCGLPAEEVRRKNMYKEGDLTHF 955
Query: 979 YESSAGEYAEYTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVT--- 1035
+ G +TLP WD+ SS + R +++FNR N W+K+G+C +P ++
Sbjct: 956 NQKLEG----FTLPRCWDECIASSQYLARKREVEKFNRENCWKKRGLCIIPTKFGISFTL 1011
Query: 1036 --LRSTPGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRV 1093
L V + +DGSV++ GG EMGQGL TK+ Q+A+ AL K+ +
Sbjct: 1012 PFLNQGGALVHVYTDGSVLLTHGGTEMGQGLHTKMVQVASRALKIPT--------SKIHI 1063
Query: 1094 VQADTLSVIQGGFTAGSTTSEASCQVVRDCCN 1125
+ T +V TA S +++ + Q V + C
Sbjct: 1064 SETSTNTVPNTSPTAASASADLNGQGVYEACQ 1095
>pdb|2E1Q|A Chain A, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|B Chain B, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|C Chain C, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|D Chain D, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
Length = 1333
Score = 421 bits (1082), Expect = e-117, Method: Compositional matrix adjust.
Identities = 322/1109 (29%), Positives = 531/1109 (47%), Gaps = 90/1109 (8%)
Query: 43 VVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHAS 102
V+LSKY+ +++ F+ ++CL +CS++ +TT EG+G++KT HP+ +R A H S
Sbjct: 52 TVMLSKYDRLQNKIVHFSANACLAPICSLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGS 111
Query: 103 QCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADA 162
QCGFCTPG+ MS+++ L ++PEP T+ E E A GNLCRCTGYRPI
Sbjct: 112 QCGFCTPGIVMSMYTLL-----RNQPEP-------TMEEIENAFQGNLCRCTGYRPILQG 159
Query: 163 CKSFAADVDIEDLGI---NSFWAKGESKEVKIS-------RLPPYKHNGELCRFPLFLKK 212
++FA D N + + V +S P E P L+
Sbjct: 160 FRTFARDGGCCGGDGNNPNCCMNQKKDHSVSLSPSLFKPEEFTPLDPTQEPIFPPELLRL 219
Query: 213 ENSSAMLLDVKGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEH--YDK 270
+++ L +G + I L+ +L+ + +KLV GNT +G + ++ +
Sbjct: 220 KDTPRKQLRFEGERVTWIQASTLKELLDL--KAQHPDAKLVVGNTEIGIEMKFKNMLFPM 277
Query: 271 YIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKI 330
+ +IPEL+ + GI GA +S + L + + ++ VF+ + +
Sbjct: 278 IVCPAWIPELNSVEHGPDGISFGAACPLSIVEKTLVDAVAKLPAQKTEVFRGVLEQLRWF 337
Query: 331 ASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMT-GQKCEKLMLEEFL---E 386
A + +++ ASVGGN++ A SD+ V + +GA + +++ G + M F
Sbjct: 338 AGKQVKSVASVGGNIITASPI---SDLNPVFMASGAKLTLVSRGTRRTVQMDHTFFPGYR 394
Query: 387 RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVS 446
+ L ILLS+EIP + F ++ A R + + + +
Sbjct: 395 KTLLSPEEILLSIEIP----------YSREGEYFSAFKQASR-REDDIAKVTSGMRVLFK 443
Query: 447 PCKTGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSV-VPE 505
P T V L +G + I A + + K+ +L + L + + +P
Sbjct: 444 PGTT----EVQELALCYGGMANR-TISALKTTQRQLSKLWKEELLQDVCAGLAEELHLPP 498
Query: 506 DGTS-IPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLKDSHVQQNHKQFDE 564
D + +R +L + F ++F+ ++ + + + CG + + + Q
Sbjct: 499 DAPGGMVDFRCTLTLSFFFKFYLTVLQKLGQENLEDKCGKLDPTFASATLLFQKDP---- 554
Query: 565 SKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYS 624
P + ++V + E VG P+ A +QASGEA+Y DDIP N L + S
Sbjct: 555 ---PADVQLFQEVPKGQSEEDMVGRPLPHLAADMQASGEAVYCDDIPRYENELSLRLVTS 611
Query: 625 TKPLARIKGIEF-KSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQ 683
T+ A+IK I+ +++ VP V +S D+P G NI I E +FA + C G
Sbjct: 612 TRAHAKIKSIDTSEAKKVPGFV-CFISADDVP--GSNITG--ICNDETVFAKDKVTCVGH 666
Query: 684 PVAFVVADSQKNXXXXXXXXXXXYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDI 743
+ VVAD+ ++ YE P I+++E+A+ +S + P K GD+
Sbjct: 667 IIGAVVADTPEHTQRAAQGVKITYEE---LPAIITIEDAIKNNSFYG-PELKIEK--GDL 720
Query: 744 SKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPESAHATIAR 802
KG +EAD+ +++ EI +G Q +FY+ET +AVP E + ++ S Q + +A+
Sbjct: 721 KKGFSEADN-VVSGEIYIGGQEHFYLETHCTIAVPKGEAGEMELFVSTQNTMKTQSFVAK 779
Query: 803 CLGIPEHNVRVITRRVGGAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGG 862
LG+P + + V +R+GG FGGK ++ V+TA ALAAYK RPVR + R DM++ GG
Sbjct: 780 MLGVPANRIVVRVKRMGGGFGGKVTRSTVVSTAVALAAYKTGRPVRCMLDRDEDMLITGG 839
Query: 863 RHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVS-PIMPSNMIGALKKYDWGALHFDI 921
RHP Y VGF G + AL+++ + G + D+S IM + Y +
Sbjct: 840 RHPFLARYKVGFMKTGTVVALEVDHFSNVGNTQDLSQSIMERALFHMDNCYKIPNIRGTG 899
Query: 922 KVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLFYES 981
++C+TNLPS +A R G QG IAE + VA T M + VR NL+ L F +
Sbjct: 900 RLCKTNLPSNTAFRGFGGPQGMLIAECWMSEVAVTCGMPAEEVRRKNLYKEGDLTHFNQK 959
Query: 982 SAGEYAEYTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVT-----L 1036
G +TLP W++ SS ++ R + +FN+ N W+K+G+C +P ++ L
Sbjct: 960 LEG----FTLPRCWEECLASSQYHARKSEVDKFNKENCWKKRGLCIIPTKFGISFTVPFL 1015
Query: 1037 RSTPGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQA 1096
+ + +DGSV++ GG EMGQGL TK+ Q+A+ AL K+ + +
Sbjct: 1016 NQAGALLHVYTDGSVLLTHGGTEMGQGLHTKMVQVASRALKIPT--------SKIYISET 1067
Query: 1097 DTLSVIQGGFTAGSTTSEASCQVVRDCCN 1125
T +V TA S +++ + Q V C
Sbjct: 1068 STNTVPNTSPTAASVSADLNGQAVYAACQ 1096
>pdb|2CKJ|A Chain A, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|B Chain B, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|C Chain C, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|D Chain D, Human Milk Xanthine Oxidoreductase
Length = 1333
Score = 421 bits (1082), Expect = e-117, Method: Compositional matrix adjust.
Identities = 322/1109 (29%), Positives = 531/1109 (47%), Gaps = 90/1109 (8%)
Query: 43 VVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHAS 102
V+LSKY+ +++ F+ ++CL +CS++ +TT EG+G++KT HP+ +R A H S
Sbjct: 52 TVMLSKYDRLQNKIVHFSANACLAPICSLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGS 111
Query: 103 QCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADA 162
QCGFCTPG+ MS+++ L ++PEP T+ E E A GNLCRCTGYRPI
Sbjct: 112 QCGFCTPGIVMSMYTLL-----RNQPEP-------TMEEIENAFQGNLCRCTGYRPILQG 159
Query: 163 CKSFAADVDIEDLGI---NSFWAKGESKEVKIS-------RLPPYKHNGELCRFPLFLKK 212
++FA D N + + V +S P E P L+
Sbjct: 160 FRTFARDGGCCGGDGNNPNCCMNQKKDHSVSLSPSLFKPEEFTPLDPTQEPIFPPELLRL 219
Query: 213 ENSSAMLLDVKGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEH--YDK 270
+++ L +G + I L+ +L+ + +KLV GNT +G + ++ +
Sbjct: 220 KDTPRKQLRFEGERVTWIQASTLKELLDL--KAQHPDAKLVVGNTEIGIEMKFKNMLFPM 277
Query: 271 YIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKI 330
+ +IPEL+ + GI GA +S + L + + ++ VF+ + +
Sbjct: 278 IVCPAWIPELNSVEHGPDGISFGAACPLSIVEKTLVDAVAKLPAQKTEVFRGVLEQLRWF 337
Query: 331 ASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMT-GQKCEKLMLEEFL---E 386
A + +++ ASVGGN++ A SD+ V + +GA + +++ G + M F
Sbjct: 338 AGKQVKSVASVGGNIITASPI---SDLNPVFMASGAKLTLVSRGTRRTVQMDHTFFPGYR 394
Query: 387 RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVS 446
+ L ILLS+EIP + F ++ A R + + + +
Sbjct: 395 KTLLSPEEILLSIEIP----------YSREGEYFSAFKQASR-REDDIAKVTSGMRVLFK 443
Query: 447 PCKTGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSV-VPE 505
P T V L +G + I A + + K+ +L + L + + +P
Sbjct: 444 PGTT----EVQELALCYGGMANR-TISALKTTQRQLSKLWKEELLQDVCAGLAEELHLPP 498
Query: 506 DGTS-IPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLKDSHVQQNHKQFDE 564
D + +R +L + F ++F+ ++ + + + CG + + + Q
Sbjct: 499 DAPGGMVDFRCTLTLSFFFKFYLTVLQKLGQENLEDKCGKLDPTFASATLLFQKDP---- 554
Query: 565 SKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYS 624
P + ++V + E VG P+ A +QASGEA+Y DDIP N L + S
Sbjct: 555 ---PADVQLFQEVPKGQSEEDMVGRPLPHLAADMQASGEAVYCDDIPRYENELSLRLVTS 611
Query: 625 TKPLARIKGIEF-KSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQ 683
T+ A+IK I+ +++ VP V +S D+P G NI I E +FA + C G
Sbjct: 612 TRAHAKIKSIDTSEAKKVPGFV-CFISADDVP--GSNITG--ICNDETVFAKDKVTCVGH 666
Query: 684 PVAFVVADSQKNXXXXXXXXXXXYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDI 743
+ VVAD+ ++ YE P I+++E+A+ +S + P K GD+
Sbjct: 667 IIGAVVADTPEHTQRAAQGVKITYEE---LPAIITIEDAIKNNSFYG-PELKIEK--GDL 720
Query: 744 SKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPESAHATIAR 802
KG +EAD+ +++ EI +G Q +FY+ET +AVP E + ++ S Q + +A+
Sbjct: 721 KKGFSEADN-VVSGEIYIGGQEHFYLETHCTIAVPKGEAGEMELFVSTQNTMKTQSFVAK 779
Query: 803 CLGIPEHNVRVITRRVGGAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGG 862
LG+P + + V +R+GG FGGK ++ V+TA ALAAYK RPVR + R DM++ GG
Sbjct: 780 MLGVPANRIVVRVKRMGGGFGGKETRSTVVSTAVALAAYKTGRPVRCMLDRDEDMLITGG 839
Query: 863 RHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVS-PIMPSNMIGALKKYDWGALHFDI 921
RHP Y VGF G + AL+++ + G + D+S IM + Y +
Sbjct: 840 RHPFLARYKVGFMKTGTVVALEVDHFSNVGNTQDLSQSIMERALFHMDNCYKIPNIRGTG 899
Query: 922 KVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLFYES 981
++C+TNLPS +A R G QG IAE + VA T M + VR NL+ L F +
Sbjct: 900 RLCKTNLPSNTAFRGFGGPQGMLIAECWMSEVAVTCGMPAEEVRRKNLYKEGDLTHFNQK 959
Query: 982 SAGEYAEYTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVT-----L 1036
G +TLP W++ SS ++ R + +FN+ N W+K+G+C +P ++ L
Sbjct: 960 LEG----FTLPRCWEECLASSQYHARKSEVDKFNKENCWKKRGLCIIPTKFGISFTVPFL 1015
Query: 1037 RSTPGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQA 1096
+ + +DGSV++ GG EMGQGL TK+ Q+A+ AL K+ + +
Sbjct: 1016 NQAGALLHVYTDGSVLLTHGGTEMGQGLHTKMVQVASRALKIPT--------SKIYISET 1067
Query: 1097 DTLSVIQGGFTAGSTTSEASCQVVRDCCN 1125
T +V TA S +++ + Q V C
Sbjct: 1068 STNTVPNTSPTAASVSADLNGQAVYAACQ 1096
>pdb|1WYG|A Chain A, Crystal Structure Of A Rat Xanthine Dehydrogenase Triple
Mutant (C535a, C992r And C1324s)
Length = 1331
Score = 417 bits (1073), Expect = e-116, Method: Compositional matrix adjust.
Identities = 315/1112 (28%), Positives = 533/1112 (47%), Gaps = 97/1112 (8%)
Query: 43 VVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHAS 102
V++SKY+ +++ F++++CL +CS++ +TT EG+GN++ HP+ +R A H S
Sbjct: 52 TVMISKYDRLQNKIVHFSVNACLAPICSLHHVAVTTVEGIGNTQK-LHPVQERIARSHGS 110
Query: 103 QCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADA 162
QCGFCTPG+ MS+++ L ++PEP T+ E E A GNLCRCTGYRPI
Sbjct: 111 QCGFCTPGIVMSMYTLL-----RNQPEP-------TVEEIENAFQGNLCRCTGYRPILQG 158
Query: 163 CKSFAADVDIEDLGI---NSFWAKGESKEVKIS-------RLPPYKHNGELCRFPLFLKK 212
++FA D N + + + V +S P E P L+
Sbjct: 159 FRTFAKDGGCCGGSGNNPNCCMNQTKDQTVSLSPSLFNPEDFKPLDPTQEPIFPPELLRL 218
Query: 213 ENSSAMLLDVKG---SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEH-- 267
+++ L +G +W +++EL ++ + +KLV GNT +G + ++
Sbjct: 219 KDTPQKKLRFEGERVTWIQASTMEELLDL-----KAQHPDAKLVVGNTEIGIEMKFKNML 273
Query: 268 YDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHM 327
+ + +IPEL+ + GI GA+ +S L EE + + VF+ + +
Sbjct: 274 FPLIVCPAWIPELNSVVHGPEGISFGASCPLSLVESVLAEEIAKLPEQKTEVFRGVMEQL 333
Query: 328 EKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMT-GQKCEKLMLEEFL- 385
A + +++ AS+GGN++ A SD+ V + +GA + +++ G + M F
Sbjct: 334 RWFAGKQVKSVASIGGNIITASPI---SDLNPVFMASGAKLTLVSRGTRRTVRMDHTFFP 390
Query: 386 --ERPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLA 443
+ L ILLS+EIP + F ++ A R + + + +
Sbjct: 391 GYRKTLLRPEEILLSIEIPY----------SKEGEFFSAFKQASR-REDDIAKVTSGMRV 439
Query: 444 EVSPCKTGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRD--S 501
P I V L FG + I A + K N +L L +
Sbjct: 440 LFKP----GTIEVQELSLCFGGMADR-TISALKTTPKQLSKSWNEELLQSVCAGLAEELQ 494
Query: 502 VVPEDGTSIPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLKDSHVQQNHKQ 561
+ P+ + +R +L + F ++F+ ++ + + + G + + + Q
Sbjct: 495 LAPDAPGGMVEFRRTLTLSFFFKFYLTVLQKLGRADLEDMAGKLDPTFASATLLFQKDP- 553
Query: 562 FDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAF 621
P + ++V + E VG P+ A +QASGEA+Y DDIP N L
Sbjct: 554 ------PANVQLFQEVPKDQSEEDMVGRPLPHLAANMQASGEAVYCDDIPRYENELSLRL 607
Query: 622 IYSTKPLARIKGIEF-KSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRC 680
+ ST+ A+I I+ +++ VP V L+ +D+P N + +F E +FA + C
Sbjct: 608 VTSTRAHAKITSIDTSEAKKVPGFV-CFLTAEDVP----NSNATGLFNDETVFAKDEVTC 662
Query: 681 AGQPVAFVVADSQKNXXXXXXXXXXXYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPV 740
G + VVAD+ ++ YE +L P I+++++A++ +S + +
Sbjct: 663 VGHIIGAVVADTPEHAQRAARGVKITYE--DL-PAIITIQDAINNNSFYGSEIKIEK--- 716
Query: 741 GDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPESAHAT 799
GD+ KG +EAD+ +++ E+ +G Q +FY+ET +AVP E + ++ S Q +
Sbjct: 717 GDLKKGFSEADN-VVSGELYIGGQEHFYLETNCTIAVPKGEAGEMELFVSTQNTMKTQSF 775
Query: 800 IARCLGIPEHNVRVITRRVGGAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIM 859
+A+ LG+P++ + V +R+GG FGGK ++ V+TA ALAA+K RPVR + R DM++
Sbjct: 776 VAKMLGVPDNRIVVRVKRMGGGFGGKETRSTVVSTALALAAHKTGRPVRCMLDRDEDMLI 835
Query: 860 VGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVS-PIMPSNMIGALKKYDWGALH 918
GGRHP Y VGF G + AL++ + G + D+S IM + Y +
Sbjct: 836 TGGRHPFLAKYKVGFMKTGTVVALEVAHFSNGGNTEDLSRSIMERALFHMDNAYKIPNIR 895
Query: 919 FDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLF 978
++C+TNLPS +A R G QG IAE + VA T + + VR N++ L F
Sbjct: 896 GTGRICKTNLPSNTAFRGFGGPQGMLIAEYWMSEVAITCGLPAEEVRRKNMYKEGDLTHF 955
Query: 979 YESSAGEYAEYTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVT--- 1035
+ G +TLP WD+ SS + R +++FNR N W+K+G+C +P ++
Sbjct: 956 NQKLEG----FTLPRCWDECIASSQYLARKREVEKFNRENRWKKRGLCIIPTKFGISFTL 1011
Query: 1036 --LRSTPGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRV 1093
L V + +DGSV++ GG EMGQGL TK+ Q+A+ AL K+ +
Sbjct: 1012 PFLNQGGALVHVYTDGSVLLTHGGTEMGQGLHTKMVQVASRALKIPT--------SKIHI 1063
Query: 1094 VQADTLSVIQGGFTAGSTTSEASCQVVRDCCN 1125
+ T +V TA S +++ + Q V + C
Sbjct: 1064 SETSTNTVPNTSPTAASASADLNGQGVYEACQ 1095
>pdb|3ZYV|A Chain A, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|B Chain B, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|C Chain C, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|D Chain D, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
Length = 1335
Score = 395 bits (1016), Expect = e-110, Method: Compositional matrix adjust.
Identities = 314/1075 (29%), Positives = 526/1075 (48%), Gaps = 114/1075 (10%)
Query: 44 VLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQ 103
V++S+Y+P ++ F+ ++CL +CS++G +TT EG+G++KT HP+ +R A H +Q
Sbjct: 57 VMISRYDPISKRISHFSATACLVPICSLHGAAVTTVEGIGSTKTRIHPVQERIAKGHGTQ 116
Query: 104 CGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADAC 163
CGFCTPGM MS+++ L + PEP + + + + GNLCRCTGYRPI ++
Sbjct: 117 CGFCTPGMVMSIYTLL-----RNHPEP-------STEQIMETLGGNLCRCTGYRPIVESA 164
Query: 164 KSFAADVDIEDLG------INSFWAKGESKEVKISRL------PPYKHNGELCRFPLFLK 211
KSF + ++ + E K ++L P EL P ++
Sbjct: 165 KSFCPSSTCCQMNGEGKCCLDEEKNEPERKNSVCTKLYEKKEFQPLDPTQELIFPPELMR 224
Query: 212 -KENSSAMLLDVKGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDK 270
E S +L +G + I+ L ++LE S+ LV GNT +G + K
Sbjct: 225 MAEESQNTVLTFRGERTTWIAPGTLNDLLEL--KMKHPSAPLVIGNTYLGLHM------K 276
Query: 271 YIDIRY--------IPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKK 322
+ D+ Y I EL V+ + G+ +G +++++ L + E ++
Sbjct: 277 FTDVSYPIIISPARILELFVVTNTKQGLTLGTGLSLTQVKNVLSDVVSRLPKEKTQIYCA 336
Query: 323 IAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAG-AMVNIMTGQKCEKLML 381
+ ++ +A + IRN AS+GG+++ P+ +LG G ++N+ + + +++ L
Sbjct: 337 LLKQLKTLAGQQIRNVASLGGHII----SRLPTSDLNPILGIGNCILNVASTEGIQQIPL 392
Query: 382 -EEFLERPP---LDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHL 437
+ FL P L +L+SV +P ++ +R APR NA +
Sbjct: 393 NDHFLAGVPDAILKPEQVLISVFVP----------RSSKWEFVSAFRQAPRQ-QNAFATV 441
Query: 438 NAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKL 497
NA D + + + +G G I A + L G+ + +L +A K+
Sbjct: 442 NAGMKVVFKE----DTNTITDLGILYGGIGAT-VISADKSCRQLIGRCWDEEMLDDAGKM 496
Query: 498 LRD--SVVPEDGTSIPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLKDSHV 555
+ + S++ + YR +LA+ FL+ F+ L +K +RD ++S K H+
Sbjct: 497 ICEEVSLLMAAPGGMEEYRKTLAISFLFMFY--LDVLKQLKTRD--PHKYPDISQKLLHI 552
Query: 556 QQNHKQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPIN 615
++ +P + S + V P+G PI A+GEA++ DD+
Sbjct: 553 LEDFPL----TMPYGMQSFQDVDFQQPLQDPIGRPIMHQSGIKHATGEAVFCDDMSVLPG 608
Query: 616 CLYGAFIYSTKPLARIKGIE----FKSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEP 671
L+ A + S+K A+I ++ S V DVVTA +D+P G N G + E
Sbjct: 609 ELFLAVVTSSKSHAKIISLDASEALASLGVVDVVTA----RDVP--GDN-GRE----EES 657
Query: 672 LFADELTRCAGQPVAFVVADSQKNXXXXXXXXXXXYEMGNLEPPILSVEEAVDRSSLFEV 731
L+A + C GQ V V ADS + Y+ ++EP I++V++A+ +
Sbjct: 658 LYAQDEVICVGQIVCAVAADSYAHAQQAAKKVKIVYQ--DIEPMIVTVQDAL------QY 709
Query: 732 PSFLYPK---PVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPD-EDNCLVVY 787
SF+ P+ G++ + AD +IL E+ LG Q +FYMETQ+ VP ED + +Y
Sbjct: 710 ESFIGPERKLEQGNVEEAFQCAD-QILEGEVHLGGQEHFYMETQSVRVVPKGEDKEMDIY 768
Query: 788 SSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPVATACALAAYKLCRPV 847
S Q +AR LGIP++ + +RVGGAFGGKA K +A+ A+AA K RP+
Sbjct: 769 VSSQDAAFTQEMVARTLGIPKNRINCHVKRVGGAFGGKASKPGLLASVAAVAAQKTGRPI 828
Query: 848 RIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVSPIMPSNMIG 907
R ++R+ DM++ GGRHP+ Y +GF +NGKI A + + I+ G +PD S ++ +
Sbjct: 829 RFILERRDDMLITGGRHPLLGKYKIGFMNNGKIKAADIQLYINGGCTPDDSELVIEYALL 888
Query: 908 ALKK-YDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRN 966
L+ Y L +VC+TNLPS +A R G QG+F+ E + VA+ + + VR
Sbjct: 889 KLENAYKIPNLRVRGRVCKTNLPSNTAFRGFGFPQGAFVTETCMSAVAAKCRLPPEKVRE 948
Query: 967 INLHTHKSLNLFYESSAGEYAEYTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVC 1026
+N++ + + E+ L W+ +SS+ R + + EFN+ W+K+G+
Sbjct: 949 LNMYRTIDRTIHNQ----EFDPTNLLQCWEACVENSSYYNRKKAVDEFNQQRFWKKRGIA 1004
Query: 1027 RLPIVHEVTLRST-----PGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFAL 1076
+P+ V T V I +DGSV+V GG+E+GQG+ TK+ Q+A+ L
Sbjct: 1005 IIPMKFSVGFPKTFYYQAAALVQIYTDGSVLVAHGGVELGQGINTKMIQVASREL 1059
>pdb|3ETR|C Chain C, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3ETR|N Chain N, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3NS1|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex With
6- Mercaptopurine
pdb|3NS1|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex With
6- Mercaptopurine
pdb|3NVV|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex With
Arsenite
pdb|3NVV|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex With
Arsenite
pdb|3NVZ|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex With
Indole-3- Aldehyde
pdb|3NVZ|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex With
Indole-3- Aldehyde
Length = 755
Score = 282 bits (721), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 183/546 (33%), Positives = 287/546 (52%), Gaps = 32/546 (5%)
Query: 587 VGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEF-KSESVPDVV 645
VG P+ AA+QASGEA+Y DDIP N L+ + ST+ A+IK I+ +++ VP V
Sbjct: 3 VGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFV 62
Query: 646 TALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXX 705
LS DIP G G +F E +FA + C G + VVAD+ ++
Sbjct: 63 -CFLSADDIP-GSNETG---LFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKV 117
Query: 706 XYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQY 765
YE +L P I+++E+A+ +S + + GD+ KG +EAD+ +++ E+ +G Q
Sbjct: 118 TYE--DL-PAIITIEDAIKNNSFYGSELKIEK---GDLKKGFSEADN-VVSGELYIGGQD 170
Query: 766 YFYMETQTALAVPD-EDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGG 824
+FY+ET +A+P E+ + ++ S Q + +A+ LG+P + + V +R+GG FGG
Sbjct: 171 HFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGG 230
Query: 825 KAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQ 884
K ++ V+ A ALAAYK PVR + R DM++ GGRHP Y VGF G I AL+
Sbjct: 231 KETRSTLVSVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALE 290
Query: 885 LNILIDAGLSPDVS-PIMPSNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGS 943
++ +AG S D+S IM + Y + ++C+TNL S +A R G Q
Sbjct: 291 VDHYSNAGNSRDLSHSIMERALFHMDNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQAL 350
Query: 944 FIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLFYESSAGEYAEYTLPLIWDKLAVSSS 1003
FIAE + VA T + + VR N++ L F + G +++P WD+ SS
Sbjct: 351 FIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQRLEG----FSVPRCWDECLKSSQ 406
Query: 1004 FNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVT-----LRSTPGKVSILSDGSVVVEVGGI 1058
+ R + +FN+ N W+K+G+C +P ++ L + + +DGSV+V GG
Sbjct: 407 YYARKSEVDKFNKENCWKKRGLCIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGT 466
Query: 1059 EMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASCQ 1118
EMGQGL TK+ Q+A+ AL + K+ + + T +V TA S +++ Q
Sbjct: 467 EMGQGLHTKMVQVASKALKI--------PISKIYISETSTNTVPNSSPTAASVSTDIYGQ 518
Query: 1119 VVRDCC 1124
V + C
Sbjct: 519 AVYEAC 524
>pdb|3NRZ|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex With
Hypoxanthine
pdb|3NRZ|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex With
Hypoxanthine
pdb|3NVW|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex With
Guanine
pdb|3NVW|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex With
Guanine
pdb|3NVY|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex With
Quercetin
pdb|3NVY|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex With
Quercetin
Length = 756
Score = 282 bits (721), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 183/546 (33%), Positives = 287/546 (52%), Gaps = 32/546 (5%)
Query: 587 VGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEF-KSESVPDVV 645
VG P+ AA+QASGEA+Y DDIP N L+ + ST+ A+IK I+ +++ VP V
Sbjct: 3 VGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFV 62
Query: 646 TALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXX 705
LS DIP G G +F E +FA + C G + VVAD+ ++
Sbjct: 63 -CFLSADDIP-GSNETG---LFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKV 117
Query: 706 XYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQY 765
YE +L P I+++E+A+ +S + + GD+ KG +EAD+ +++ E+ +G Q
Sbjct: 118 TYE--DL-PAIITIEDAIKNNSFYGSELKIEK---GDLKKGFSEADN-VVSGELYIGGQD 170
Query: 766 YFYMETQTALAVPD-EDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGG 824
+FY+ET +A+P E+ + ++ S Q + +A+ LG+P + + V +R+GG FGG
Sbjct: 171 HFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGG 230
Query: 825 KAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQ 884
K ++ V+ A ALAAYK PVR + R DM++ GGRHP Y VGF G I AL+
Sbjct: 231 KETRSTLVSVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALE 290
Query: 885 LNILIDAGLSPDVS-PIMPSNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGS 943
++ +AG S D+S IM + Y + ++C+TNL S +A R G Q
Sbjct: 291 VDHYSNAGNSRDLSHSIMERALFHMDNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQAL 350
Query: 944 FIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLFYESSAGEYAEYTLPLIWDKLAVSSS 1003
FIAE + VA T + + VR N++ L F + G +++P WD+ SS
Sbjct: 351 FIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQRLEG----FSVPRCWDECLKSSQ 406
Query: 1004 FNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVT-----LRSTPGKVSILSDGSVVVEVGGI 1058
+ R + +FN+ N W+K+G+C +P ++ L + + +DGSV+V GG
Sbjct: 407 YYARKSEVDKFNKENCWKKRGLCIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGT 466
Query: 1059 EMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASCQ 1118
EMGQGL TK+ Q+A+ AL + K+ + + T +V TA S +++ Q
Sbjct: 467 EMGQGLHTKMVQVASKALKIP--------ISKIYISETSTNTVPNSSPTAASVSTDIYGQ 518
Query: 1119 VVRDCC 1124
V + C
Sbjct: 519 AVYEAC 524
>pdb|3EUB|C Chain C, Crystal Structure Of Desulfo-Xanthine Oxidase With Xanthine
pdb|3EUB|L Chain L, Crystal Structure Of Desulfo-Xanthine Oxidase With Xanthine
pdb|3EUB|U Chain U, Crystal Structure Of Desulfo-Xanthine Oxidase With Xanthine
pdb|3EUB|4 Chain 4, Crystal Structure Of Desulfo-Xanthine Oxidase With Xanthine
Length = 762
Score = 282 bits (721), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 183/546 (33%), Positives = 287/546 (52%), Gaps = 32/546 (5%)
Query: 587 VGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEF-KSESVPDVV 645
VG P+ AA+QASGEA+Y DDIP N L+ + ST+ A+IK I+ +++ VP V
Sbjct: 3 VGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFV 62
Query: 646 TALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXX 705
LS DIP G G +F E +FA + C G + VVAD+ ++
Sbjct: 63 -CFLSADDIP-GSNETG---LFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKV 117
Query: 706 XYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQY 765
YE +L P I+++E+A+ +S + + GD+ KG +EAD+ +++ E+ +G Q
Sbjct: 118 TYE--DL-PAIITIEDAIKNNSFYGSELKIEK---GDLKKGFSEADN-VVSGELYIGGQD 170
Query: 766 YFYMETQTALAVPD-EDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGG 824
+FY+ET +A+P E+ + ++ S Q + +A+ LG+P + + V +R+GG FGG
Sbjct: 171 HFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGG 230
Query: 825 KAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQ 884
K ++ V+ A ALAAYK PVR + R DM++ GGRHP Y VGF G I AL+
Sbjct: 231 KETRSTLVSVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALE 290
Query: 885 LNILIDAGLSPDVS-PIMPSNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGS 943
++ +AG S D+S IM + Y + ++C+TNL S +A R G Q
Sbjct: 291 VDHYSNAGNSRDLSHSIMERALFHMDNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQAL 350
Query: 944 FIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLFYESSAGEYAEYTLPLIWDKLAVSSS 1003
FIAE + VA T + + VR N++ L F + G +++P WD+ SS
Sbjct: 351 FIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQRLEG----FSVPRCWDECLKSSQ 406
Query: 1004 FNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVT-----LRSTPGKVSILSDGSVVVEVGGI 1058
+ R + +FN+ N W+K+G+C +P ++ L + + +DGSV+V GG
Sbjct: 407 YYARKSEVDKFNKENCWKKRGLCIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGT 466
Query: 1059 EMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASCQ 1118
EMGQGL TK+ Q+A+ AL + K+ + + T +V TA S +++ Q
Sbjct: 467 EMGQGLHTKMVQVASKALKIP--------ISKIYISETSTNTVPNSSPTAASVSTDIYGQ 518
Query: 1119 VVRDCC 1124
V + C
Sbjct: 519 AVYEAC 524
>pdb|1FIQ|C Chain C, Crystal Structure Of Xanthine Oxidase From Bovine Milk
pdb|3B9J|C Chain C, Structure Of Xanthine Oxidase With 2-Hydroxy-6-Methylpurine
pdb|3B9J|K Chain K, Structure Of Xanthine Oxidase With 2-Hydroxy-6-Methylpurine
Length = 763
Score = 282 bits (721), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 183/546 (33%), Positives = 287/546 (52%), Gaps = 32/546 (5%)
Query: 587 VGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEF-KSESVPDVV 645
VG P+ AA+QASGEA+Y DDIP N L+ + ST+ A+IK I+ +++ VP V
Sbjct: 4 VGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFV 63
Query: 646 TALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXX 705
LS DIP G G +F E +FA + C G + VVAD+ ++
Sbjct: 64 -CFLSADDIP-GSNETG---LFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKV 118
Query: 706 XYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQY 765
YE +L P I+++E+A+ +S + + GD+ KG +EAD+ +++ E+ +G Q
Sbjct: 119 TYE--DL-PAIITIEDAIKNNSFYGSELKIEK---GDLKKGFSEADN-VVSGELYIGGQD 171
Query: 766 YFYMETQTALAVPD-EDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGG 824
+FY+ET +A+P E+ + ++ S Q + +A+ LG+P + + V +R+GG FGG
Sbjct: 172 HFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGG 231
Query: 825 KAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQ 884
K ++ V+ A ALAAYK PVR + R DM++ GGRHP Y VGF G I AL+
Sbjct: 232 KETRSTLVSVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALE 291
Query: 885 LNILIDAGLSPDVS-PIMPSNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGS 943
++ +AG S D+S IM + Y + ++C+TNL S +A R G Q
Sbjct: 292 VDHYSNAGNSRDLSHSIMERALFHMDNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQAL 351
Query: 944 FIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLFYESSAGEYAEYTLPLIWDKLAVSSS 1003
FIAE + VA T + + VR N++ L F + G +++P WD+ SS
Sbjct: 352 FIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQRLEG----FSVPRCWDECLKSSQ 407
Query: 1004 FNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVT-----LRSTPGKVSILSDGSVVVEVGGI 1058
+ R + +FN+ N W+K+G+C +P ++ L + + +DGSV+V GG
Sbjct: 408 YYARKSEVDKFNKENCWKKRGLCIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGT 467
Query: 1059 EMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASCQ 1118
EMGQGL TK+ Q+A+ AL + K+ + + T +V TA S +++ Q
Sbjct: 468 EMGQGLHTKMVQVASKALKIP--------ISKIYISETSTNTVPNSSPTAASVSTDIYGQ 519
Query: 1119 VVRDCC 1124
V + C
Sbjct: 520 AVYEAC 525
>pdb|3SR6|C Chain C, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
pdb|3SR6|L Chain L, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
Length = 745
Score = 281 bits (720), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 183/546 (33%), Positives = 287/546 (52%), Gaps = 32/546 (5%)
Query: 587 VGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEF-KSESVPDVV 645
VG P+ AA+QASGEA+Y DDIP N L+ + ST+ A+IK I+ +++ VP V
Sbjct: 3 VGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFV 62
Query: 646 TALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXX 705
LS DIP G G +F E +FA + C G + VVAD+ ++
Sbjct: 63 -CFLSADDIP-GSNETG---LFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKV 117
Query: 706 XYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQY 765
YE +L P I+++E+A+ +S + + GD+ KG +EAD+ +++ E+ +G Q
Sbjct: 118 TYE--DL-PAIITIEDAIKNNSFYGSELKIEK---GDLKKGFSEADN-VVSGELYIGGQD 170
Query: 766 YFYMETQTALAVPD-EDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGG 824
+FY+ET +A+P E+ + ++ S Q + +A+ LG+P + + V +R+GG FGG
Sbjct: 171 HFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGG 230
Query: 825 KAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQ 884
K ++ V+ A ALAAYK PVR + R DM++ GGRHP Y VGF G I AL+
Sbjct: 231 KETRSTLVSVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALE 290
Query: 885 LNILIDAGLSPDVS-PIMPSNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGS 943
++ +AG S D+S IM + Y + ++C+TNL S +A R G Q
Sbjct: 291 VDHYSNAGNSRDLSHSIMERALFHMDNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQAL 350
Query: 944 FIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLFYESSAGEYAEYTLPLIWDKLAVSSS 1003
FIAE + VA T + + VR N++ L F + G +++P WD+ SS
Sbjct: 351 FIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQRLEG----FSVPRCWDECLKSSQ 406
Query: 1004 FNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVT-----LRSTPGKVSILSDGSVVVEVGGI 1058
+ R + +FN+ N W+K+G+C +P ++ L + + +DGSV+V GG
Sbjct: 407 YYARKSEVDKFNKENCWKKRGLCIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGT 466
Query: 1059 EMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASCQ 1118
EMGQGL TK+ Q+A+ AL + K+ + + T +V TA S +++ Q
Sbjct: 467 EMGQGLHTKMVQVASKALKIP--------ISKIYISETSTNTVPNSSPTAASVSTDIYGQ 518
Query: 1119 VVRDCC 1124
V + C
Sbjct: 519 AVYEAC 524
>pdb|2W55|B Chain B, Crystal Structure Of Xanthine Dehydrogenase (E232q Variant)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W55|D Chain D, Crystal Structure Of Xanthine Dehydrogenase (E232q Variant)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W55|F Chain F, Crystal Structure Of Xanthine Dehydrogenase (E232q Variant)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W55|H Chain H, Crystal Structure Of Xanthine Dehydrogenase (E232q Variant)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
Length = 777
Score = 195 bits (495), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 168/563 (29%), Positives = 258/563 (45%), Gaps = 46/563 (8%)
Query: 587 VGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVT 646
VG+P+ A +G+A Y+DD+P P N L+ AF ST+ A I G++ + V
Sbjct: 3 VGKPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVI 62
Query: 647 ALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXXX 706
A+ + D+P + + EP+ A GQP+ V A S +
Sbjct: 63 AVFTAADLPHDNDASPAPS---PEPVLATGEVHFVGQPIFLVAATSHRAARIAARKARIT 119
Query: 707 YEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQYY 766
Y P IL++++A+ S FE ++ + GD+ + A H + ++G Q +
Sbjct: 120 YAP---RPAILTLDQALAADSRFEGGPVIWAR--GDVETALAGAAH-LAEGCFEIGGQEH 173
Query: 767 FYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKA 826
FY+E Q ALA+P E +V++ S Q P +A LG+ H+VRV RR+GG FGGK
Sbjct: 174 FYLEGQAALALPAEGG-VVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGKQ 232
Query: 827 IKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLN 886
+ +A ACA+AA RP ++ R DM++ G RH +I Y +G ++GK+
Sbjct: 233 SQGNHLAIACAVAARATGRPCKMRYDRDDDMVITGKRHDFRIRYRIGADASGKLLGADFV 292
Query: 887 ILIDAGLSPDVS-PIMPSNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFI 945
L G S D+S P+ M+ A Y AL + RTN S +A R G QG+
Sbjct: 293 HLARCGWSADLSLPVCDRAMLHADGSYFVPALRIESHRLRTNTQSNTAFRGFGGPQGALG 352
Query: 946 AEAVIEHVASTLSMEVDFVRNINLH-------------------THKSLNLFYESSAGEY 986
E IEH+A + + +R +N + T K+ Y E
Sbjct: 353 MERAIEHLARGMGRDPAELRALNFYDPPERGGLSAPPSPPEPIATKKTQTTHYGQ---EV 409
Query: 987 AEYTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVT-----LRSTPG 1041
A+ L + +L S++F R I +N +N +G+ P+ ++ L
Sbjct: 410 ADCVLGELVTRLQKSANFTTRRAEIAAWNSTNRTLARGIALSPVKFGISFTLTHLNQAGA 469
Query: 1042 KVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSV 1101
V I +DGSV + GG EMGQGL K+ Q+AA L G +VR+ DT V
Sbjct: 470 LVQIYTDGSVALNHGGTEMGQGLHAKMVQVAAAVL--------GIDPVQVRITATDTSKV 521
Query: 1102 IQGGFTAGSTTSEASCQVVRDCC 1124
TA S+ ++ + V+D C
Sbjct: 522 PNTSATAASSGADMNGMAVKDAC 544
>pdb|1JRO|B Chain B, Crystal Structure Of Xanthine Dehydrogenase From Rhodobacter
Capsulatus
pdb|1JRO|D Chain D, Crystal Structure Of Xanthine Dehydrogenase From Rhodobacter
Capsulatus
pdb|1JRO|F Chain F, Crystal Structure Of Xanthine Dehydrogenase From Rhodobacter
Capsulatus
pdb|1JRO|H Chain H, Crystal Structure Of Xanthine Dehydrogenase From Rhodobacter
Capsulatus
pdb|1JRP|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|D Chain D, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|F Chain F, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|H Chain H, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|2W3R|B Chain B, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|D Chain D, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|F Chain F, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|H Chain H, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3S|B Chain B, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|D Chain D, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|F Chain F, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|H Chain H, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W54|B Chain B, Crystal Structure Of Xanthine Dehydrogenase From Rhodobacter
Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|D Chain D, Crystal Structure Of Xanthine Dehydrogenase From Rhodobacter
Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|F Chain F, Crystal Structure Of Xanthine Dehydrogenase From Rhodobacter
Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|H Chain H, Crystal Structure Of Xanthine Dehydrogenase From Rhodobacter
Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
Length = 777
Score = 195 bits (495), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 168/563 (29%), Positives = 258/563 (45%), Gaps = 46/563 (8%)
Query: 587 VGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVT 646
VG+P+ A +G+A Y+DD+P P N L+ AF ST+ A I G++ + V
Sbjct: 3 VGKPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVI 62
Query: 647 ALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXXX 706
A+ + D+P + + EP+ A GQP+ V A S +
Sbjct: 63 AVFTAADLPHDNDASPAPS---PEPVLATGEVHFVGQPIFLVAATSHRAARIAARKARIT 119
Query: 707 YEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQYY 766
Y P IL++++A+ S FE ++ + GD+ + A H + ++G Q +
Sbjct: 120 YAP---RPAILTLDQALAADSRFEGGPVIWAR--GDVETALAGAAH-LAEGCFEIGGQEH 173
Query: 767 FYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKA 826
FY+E Q ALA+P E +V++ S Q P +A LG+ H+VRV RR+GG FGGK
Sbjct: 174 FYLEGQAALALPAEGG-VVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGKE 232
Query: 827 IKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLN 886
+ +A ACA+AA RP ++ R DM++ G RH +I Y +G ++GK+
Sbjct: 233 SQGNHLAIACAVAARATGRPCKMRYDRDDDMVITGKRHDFRIRYRIGADASGKLLGADFV 292
Query: 887 ILIDAGLSPDVS-PIMPSNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFI 945
L G S D+S P+ M+ A Y AL + RTN S +A R G QG+
Sbjct: 293 HLARCGWSADLSLPVCDRAMLHADGSYFVPALRIESHRLRTNTQSNTAFRGFGGPQGALG 352
Query: 946 AEAVIEHVASTLSMEVDFVRNINLH-------------------THKSLNLFYESSAGEY 986
E IEH+A + + +R +N + T K+ Y E
Sbjct: 353 MERAIEHLARGMGRDPAELRALNFYDPPERGGLSAPPSPPEPIATKKTQTTHYGQ---EV 409
Query: 987 AEYTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVT-----LRSTPG 1041
A+ L + +L S++F R I +N +N +G+ P+ ++ L
Sbjct: 410 ADCVLGELVTRLQKSANFTTRRAEIAAWNSTNRTLARGIALSPVKFGISFTLTHLNQAGA 469
Query: 1042 KVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSV 1101
V I +DGSV + GG EMGQGL K+ Q+AA L G +VR+ DT V
Sbjct: 470 LVQIYTDGSVALNHGGTEMGQGLHAKMVQVAAAVL--------GIDPVQVRITATDTSKV 521
Query: 1102 IQGGFTAGSTTSEASCQVVRDCC 1124
TA S+ ++ + V+D C
Sbjct: 522 PNTSATAASSGADMNGMAVKDAC 544
>pdb|1FIQ|A Chain A, Crystal Structure Of Xanthine Oxidase From Bovine Milk
pdb|3B9J|A Chain A, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
pdb|3B9J|I Chain I, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
Length = 219
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 81/125 (64%), Gaps = 12/125 (9%)
Query: 43 VVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHAS 102
V+LSKY+ D++ F+ ++CL +C+++ +TT EG+G++KT HP+ +R A H S
Sbjct: 52 TVMLSKYDRLQDKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGS 111
Query: 103 QCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADA 162
QCGFCTPG+ MS+++ L + +PEP T+ E E A GNLCRCTGYRPI
Sbjct: 112 QCGFCTPGIVMSMYTLLRN-----QPEP-------TVEEIEDAFQGNLCRCTGYRPILQG 159
Query: 163 CKSFA 167
++FA
Sbjct: 160 FRTFA 164
>pdb|3EUB|A Chain A, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|J Chain J, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|S Chain S, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|2 Chain 2, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
Length = 165
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 81/124 (65%), Gaps = 12/124 (9%)
Query: 44 VLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQ 103
V+LSKY+ D++ F+ ++CL +C+++ +TT EG+G++KT HP+ +R A H SQ
Sbjct: 53 VMLSKYDRLQDKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQ 112
Query: 104 CGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADAC 163
CGFCTPG+ MS+++ L + +PEP T+ E E A GNLCRCTGYRPI
Sbjct: 113 CGFCTPGIVMSMYTLLRN-----QPEP-------TVEEIEDAFQGNLCRCTGYRPILQGF 160
Query: 164 KSFA 167
++FA
Sbjct: 161 RTFA 164
>pdb|3ETR|A Chain A, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3ETR|L Chain L, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3NRZ|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NRZ|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NS1|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NS1|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NVV|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVV|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVW|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVW|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVY|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVY|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVZ|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3NVZ|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3SR6|A Chain A, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
pdb|3SR6|J Chain J, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
Length = 164
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 81/124 (65%), Gaps = 12/124 (9%)
Query: 44 VLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQ 103
V+LSKY+ D++ F+ ++CL +C+++ +TT EG+G++KT HP+ +R A H SQ
Sbjct: 52 VMLSKYDRLQDKIIHFSANACLAPICTLHHVAVTTVEGIGSTKTRLHPVQERIAKSHGSQ 111
Query: 104 CGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADAC 163
CGFCTPG+ MS+++ L + +PEP T+ E E A GNLCRCTGYRPI
Sbjct: 112 CGFCTPGIVMSMYTLLRN-----QPEP-------TVEEIEDAFQGNLCRCTGYRPILQGF 159
Query: 164 KSFA 167
++FA
Sbjct: 160 RTFA 163
>pdb|3HRD|A Chain A, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|E Chain E, Crystal Structure Of Nicotinate Dehydrogenase
Length = 425
Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 102/400 (25%), Positives = 159/400 (39%), Gaps = 23/400 (5%)
Query: 580 LSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSE 639
+ ++Y +G+ K + + G A + D P + LY ST P ARI ++
Sbjct: 1 MGKDYQVLGKNKVKVDSLEKVMGTAKFAADYSFP-DMLYAGVFRSTVPHARIVSLDLSKA 59
Query: 640 SVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNXXXX 699
D V A+L Y IP G G I EP D+ R G +A V A +
Sbjct: 60 RAIDGVEAVLDYHAIP-GKNRFG--IIIKDEPCLVDDKVRRYGDAIAVVAAQTPDLVQEA 116
Query: 700 XXXXXXXYEMGNLEPPILSVEEAVDRSS--------LFEVPSFLYPKPVGDISKGMNEAD 751
YE LE I ++E A++ S + +V Y GD+ + D
Sbjct: 117 LDAITIEYE--ELEG-IFTMERALEEDSPAIHGDTNIHQVKHLEY----GDVDAAFKQCD 169
Query: 752 HRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNV 811
++ + ++E ++ D + L V S Q P +A L +P V
Sbjct: 170 -IVVEDTYSTHRLTHMFIEPDAGVSYYDNEGMLTVVVSTQNPHYDRGEVAGMLALPNSKV 228
Query: 812 RVITRRVGGAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYS 871
R+I GG FGGK + V CAL Y +PV++ R+ + RHPM +
Sbjct: 229 RIIQATTGGGFGGKL--DLSVQCHCALLTYHTKKPVKMVRSREESTTVSSKRHPMTMHCK 286
Query: 872 VGFKSNGKITALQLNILIDAGLSPDVSP-IMPSNMIGALKKYDWGALHFDIKVCRTNLPS 930
G +G++ A+Q+ + D G P ++ + + Y + D K TN P
Sbjct: 287 TGATKDGRLQAVQVEMFGDTGAYASYGPAVITRATVHCMGPYVVPNVRVDAKFVYTNNPM 346
Query: 931 RSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLH 970
A R G Q S E + +A L M+ +R +N H
Sbjct: 347 SGAFRGFGVPQASVCHEGQMNALAKALGMDPIDIRILNAH 386
>pdb|1RM6|A Chain A, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1RM6|D Chain D, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|A Chain A, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|D Chain D, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
Length = 769
Score = 96.7 bits (239), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 129/521 (24%), Positives = 208/521 (39%), Gaps = 53/521 (10%)
Query: 599 QASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGG 658
+ +G+A Y DI +P + L G + S ARI I+ + + V A+ + + P
Sbjct: 23 KVTGKAKYTADIAAP-DALVGRILRSPHAHARILAIDTSAAEALEGVIAVCTGAETP--- 78
Query: 659 QNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXXXYEM--------G 710
G I +E A + R G PVA V A + YE+
Sbjct: 79 VPFGVLPIAENEYPLARDKVRYRGDPVAAVAAIDEVTAEKALALIKVDYEVLPAYMTPKA 138
Query: 711 NLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQYYFYME 770
++ +++ + + L EV + GD++ EAD I + +ME
Sbjct: 139 AMKAGAIALHDDKPNNILREVHAEF-----GDVAAAFAEAD-LIREKTYTFAEVNHVHME 192
Query: 771 TQTALAVPDE-DNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKA 829
LA D + L + ++ Q P H +A CL + +RVI +GG FG + +A
Sbjct: 193 LNATLAEYDPVRDMLTLNTTTQVPYYVHLKVAACLQMDSARIRVIKPFLGGGFGART-EA 251
Query: 830 MPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILI 889
+ L A K VR+ R+ I GR ++ +G K +GKI AL L
Sbjct: 252 LHFEIIAGLLARKAKGTVRLLQTREETFIAHRGRPWTEVKMKIGLKKDGKIAALALE-AT 310
Query: 890 DAGLSPDVSPIMPSNMIGALKK--YDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAE 947
AG + I+ GAL Y A+ D TN P AMR G V E
Sbjct: 311 QAGGAYAGYGIITILYTGALMHGLYHIPAIKHDAWRVYTNTPPCGAMRGHGTVDTRAAFE 370
Query: 948 AVIEHVASTLSMEVDFVRNINLHTHKSLNLFYESSAGEYAEYTLPLIWDKLAVSSSFNQR 1007
A++ + L ++ +R IN+ Y A Y +P +K+ +S + +R
Sbjct: 371 ALLTEMGEELGIDSLKIRQINMLPQIPYVTMY---AQRVMSYGVPECLEKVKAASGWEER 427
Query: 1008 TEMIKEFNRSNLWRKKGVCRLPIVHEVTLRSTPG----------KVSILSDGSVVVEVGG 1057
+ L + +G+ + + H V+ STP + + DG + + G
Sbjct: 428 --------KGKLPKGRGLG-IALSHFVSGTSTPKHWTGEPHATVNLKLDFDGGITLLTGA 478
Query: 1058 IEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADT 1098
++GQG T Q+AA L G L ++RV+ AD+
Sbjct: 479 ADIGQGSNTMASQVAAEVL--------GVRLSRIRVISADS 511
>pdb|1JRO|A Chain A, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|C Chain C, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|E Chain E, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|G Chain G, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRP|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|C Chain C, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|E Chain E, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|G Chain G, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
Length = 462
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 124/507 (24%), Positives = 199/507 (39%), Gaps = 116/507 (22%)
Query: 39 CGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAG 98
CGAC V++ D +++CL +L + G + T EG+ HP+ Q
Sbjct: 44 CGACTVMIR------DAAGSRAVNACLMMLPQIAGKALRTIEGIAAPDGRLHPVQQAMID 97
Query: 99 FHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRP 158
H SQCGFCTPG +S+ +A K + + +AGNLCRCTGY P
Sbjct: 98 HHGSQCGFCTPGFIVSMAAAHDRDRKDY----------------DDLLAGNLCRCTGYAP 141
Query: 159 IADACKSFAADVDIEDLGINSFWAKGE-SKEVKISRLPPYKHNGELCRFPLFLKKENSSA 217
I A ++ A + + L ++ + + S V+ G+ P FL + +
Sbjct: 142 ILRAAEAAAGEPPADWLQADAAFTLAQLSSGVR----------GQTA--PAFLPETS--- 186
Query: 218 MLLDVKGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYY--KEVEHYDKYIDIR 275
D W+ L E + L+AG T + + K + + +
Sbjct: 187 ---DALADWY-----------LAHPEAT------LIAGGTDVSLWVTKALRDLPEVAFLS 226
Query: 276 YIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFI 335
+ +L+ IR G IGA VTI+ A+ A E +AG + + AS +
Sbjct: 227 HCKDLAQIRETPDGYGIGAGVTIA-ALRAFAEGPH----------PALAGLLRRFASEQV 275
Query: 336 RNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEE-FLERPPLDSR- 393
R A++GGN+ D L+ GA + + GQ+ ++ LE+ FLE D R
Sbjct: 276 RQVATIGGNIANGSPI---GDGPPALIAMGASLTLRRGQERRRMPLEDFFLEYRKQDRRP 332
Query: 394 -SILLSVEIP-------CWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEV 445
+ SV +P C+ L++ + ++V LN
Sbjct: 333 GEFVESVTLPKSAPGLRCYKLSKRFDQDISAV----------------CGCLNL------ 370
Query: 446 SPCKTGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVP- 504
T G ++ R+AFG RA E L G+ + A+ LL P
Sbjct: 371 ----TLKGSKIETARIAFGGMAGVPK-RAAAFEAALIGQDFREDTIAAALPLLAQDFTPL 425
Query: 505 EDGTSIPAYR----SSLAVGFLYEFFG 527
D + AYR ++A+ ++ E G
Sbjct: 426 SDMRASAAYRMNAAQAMALRYVRELSG 452
>pdb|2W3R|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3S|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W54|A Chain A, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|C Chain C, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|E Chain E, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|G Chain G, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W55|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
Length = 462
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 124/507 (24%), Positives = 199/507 (39%), Gaps = 116/507 (22%)
Query: 39 CGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAG 98
CGAC V++ D +++CL +L + G + T EG+ HP+ Q
Sbjct: 44 CGACTVMIR------DAAGSRAVNACLMMLPQIAGKALRTIEGIAAPDGRLHPVQQAMID 97
Query: 99 FHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRP 158
H SQCGFCTPG +S+ +A K + + +AGNLCRCTGY P
Sbjct: 98 HHGSQCGFCTPGFIVSMAAAHDRDRKDY----------------DDLLAGNLCRCTGYAP 141
Query: 159 IADACKSFAADVDIEDLGINSFWAKGE-SKEVKISRLPPYKHNGELCRFPLFLKKENSSA 217
I A ++ A + + L ++ + + S V+ G+ P FL + +
Sbjct: 142 ILRAAEAAAGEPPADWLQADAAFTLAQLSSGVR----------GQTA--PAFLPETS--- 186
Query: 218 MLLDVKGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYY--KEVEHYDKYIDIR 275
D W+ L E + L+AG T + + K + + +
Sbjct: 187 ---DALADWY-----------LAHPEAT------LIAGGTDVSLWVTKALRDLPEVAFLS 226
Query: 276 YIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFI 335
+ +L+ IR G IGA VTI+ A+ A E +AG + + AS +
Sbjct: 227 HCKDLAQIRETPDGYGIGAGVTIA-ALRAFAEGPH----------PALAGLLRRFASEQV 275
Query: 336 RNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEE-FLERPPLDSR- 393
R A++GGN+ D L+ GA + + GQ+ ++ LE+ FLE D R
Sbjct: 276 RQVATIGGNIANGSPI---GDGPPALIAMGASLTLRRGQERRRMPLEDFFLEYRKQDRRP 332
Query: 394 -SILLSVEIP-------CWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEV 445
+ SV +P C+ L++ + ++V LN
Sbjct: 333 GEFVESVTLPKSAPGLRCYKLSKRFDQDISAV----------------CGCLNL------ 370
Query: 446 SPCKTGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVP- 504
T G ++ R+AFG RA E L G+ + A+ LL P
Sbjct: 371 ----TLKGSKIETARIAFGGMAGVPK-RAAAFEAALIGQDFREDTIAAALPLLAQDFTPL 425
Query: 505 EDGTSIPAYR----SSLAVGFLYEFFG 527
D + AYR ++A+ ++ E G
Sbjct: 426 SDMRASAAYRMNAAQAMALRYVRELSG 452
>pdb|1N5W|A Chain A, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N5W|D Chain D, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N60|A Chain A, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N60|D Chain D, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N61|A Chain A, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N61|D Chain D, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N62|A Chain A, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N62|D Chain D, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N63|A Chain A, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
pdb|1N63|D Chain D, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
pdb|1ZXI|A Chain A, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
pdb|1ZXI|D Chain D, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
Length = 166
Score = 76.6 bits (187), Expect = 8e-14, Method: Composition-based stats.
Identities = 47/138 (34%), Positives = 61/138 (44%), Gaps = 28/138 (20%)
Query: 37 SGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRF 96
S CGAC V L+ ++ SC NG ITT EG+ + + F
Sbjct: 45 SHCGACTV----------DLDGMSVKSCTMFAVQANGASITTIEGMAAPDGTLSALQEGF 94
Query: 97 AGFHASQCGFCTPGMCMSLFSALVDAEKTHR---PEPPPGLSKLTISEAEKAIAGNLCRC 153
H QCG+CTPGM M ++HR P P T +E I GNLCRC
Sbjct: 95 RMMHGLQCGYCTPGMIM----------RSHRLLQENPSP-----TEAEIRFGIGGNLCRC 139
Query: 154 TGYRPIADACKSFAADVD 171
TGY+ I A + AA ++
Sbjct: 140 TGYQNIVKAIQYAAAKIN 157
>pdb|1T3Q|A Chain A, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
pdb|1T3Q|D Chain D, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
Length = 168
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 58/124 (46%), Gaps = 23/124 (18%)
Query: 39 CGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAG 98
CG+C +L+ + + SCLTL GC I T EGL + + + F
Sbjct: 53 CGSCTILI----------DGAPMRSCLTLAVQAEGCSIETVEGLSQGEK-LNALQDSFRR 101
Query: 99 FHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRP 158
HA QCGFCT GM + S L + P P + E + ++GNLCRCTGY
Sbjct: 102 HHALQCGFCTAGMLATARSILAE-------NPAP-----SRDEVREVMSGNLCRCTGYET 149
Query: 159 IADA 162
I DA
Sbjct: 150 IIDA 153
>pdb|1FFU|A Chain A, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFU|D Chain D, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFV|A Chain A, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
pdb|1FFV|D Chain D, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
Length = 163
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 61/133 (45%), Gaps = 23/133 (17%)
Query: 30 SSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGF 89
+ + + S CGAC V ++ ++ SC L +G + T EGL N K
Sbjct: 38 AHIGCETSHCGACTV----------DIDGRSVKSCTHLAVQCDGSEVLTVEGLAN-KGVL 86
Query: 90 HPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGN 149
H + + F H QCGFCTPGM M + L + P P T +E + GN
Sbjct: 87 HAVQEGFYKEHGLQCGFCTPGMLMRAYRFLQE-----NPNP-------TEAEIRMGMTGN 134
Query: 150 LCRCTGYRPIADA 162
LCRCTGY+ I A
Sbjct: 135 LCRCTGYQNIVKA 147
>pdb|1RM6|C Chain C, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1RM6|F Chain F, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|C Chain C, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|F Chain F, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
Length = 161
Score = 67.4 bits (163), Expect = 4e-11, Method: Composition-based stats.
Identities = 49/133 (36%), Positives = 63/133 (47%), Gaps = 29/133 (21%)
Query: 39 CGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAG 98
CGAC VL+ P L +C TL V G + T E L T + + A
Sbjct: 46 CGACTVLVDD-RPRL---------ACSTLAHQVAGKKVETVESLATQGT----LSKLQAA 91
Query: 99 FH---ASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTG 155
FH +QCGFCTPGM M+ +E R P P + E + A+AGNLCRCTG
Sbjct: 92 FHEKLGTQCGFCTPGMIMA-------SEALLRKNPSP-----SRDEIKAALAGNLCRCTG 139
Query: 156 YRPIADACKSFAA 168
Y I + ++ AA
Sbjct: 140 YVKIIKSVETAAA 152
>pdb|1ZXI|B Chain B, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
pdb|1ZXI|E Chain E, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
Length = 809
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 123/528 (23%), Positives = 201/528 (38%), Gaps = 70/528 (13%)
Query: 601 SGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEF-KSESVPDVVTALLSYKDIPEGGQ 659
G+ YVDD+ P L+G F+ S+ ARIK I+ K++++P V A+L+ D+
Sbjct: 35 QGKGNYVDDVKLP-GMLFGDFVRSSHAHARIKSIDTSKAKALPGVF-AVLTAADLKPLNL 92
Query: 660 NIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXXXYE--------MGN 711
+ + + ADE Q VAFVVA + YE
Sbjct: 93 HYMPTLAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPVLVDPFKA 152
Query: 712 LEP--PILSVEEAVDRSS----LFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQY 765
+EP P+L E+ D+ + + + ++ +GD D AE+ +
Sbjct: 153 MEPDAPLLR-EDIKDKMTGAHGARKHHNHIFRWEIGD----KEGTDATFAKAEVVSKDMF 207
Query: 766 YFY------METQTALAVPDE-DNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRV 818
++ +ET +A D+ L ++ + Q P ++ G+PEH + VI +
Sbjct: 208 TYHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDI 267
Query: 819 GGAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNG 878
GG FG K + A +A+ L PV+ R ++ +T + +G
Sbjct: 268 GGGFGNK-VGAYSGYVCAVVASIVLGVPVKWVEDRMENLSTTSFARDYHMTTELAATKDG 326
Query: 879 KITALQLNILIDAG---LSPDVSPIMPSNMIGALKKYDWGALHFDIKVCRTNLPS----- 930
KI A++ ++L D G D S M YD H + TN S
Sbjct: 327 KILAMRCHVLADHGAFDACADPSKWPAGFMNICTGSYDMPVAHLAVDGVYTNKASGGVAY 386
Query: 931 RSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSL----NLFYESSAGEY 986
R + R + + E IE +A L M+ +R N + L +E +G Y
Sbjct: 387 RCSFRV---TEAVYAIERAIETLAQRLEMDSADLRIKNFIQPEQFPYMAPLGWEYDSGNY 443
Query: 987 AEYTLPLIWDKLAVSSSFNQ-RTEMIKE---FNRSNLWRKKGVCRLPIVHEVTLRSTPGK 1042
PL K + ++Q R E + F R G+ + E+ + + P K
Sbjct: 444 -----PLAMKKAMDTVGYHQLRAEQKAKQEAFKRGETREIMGIG-ISFFTEI-VGAGPSK 496
Query: 1043 --------------VSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFAL 1076
+ I GSV+ +G GQG T Q+ A L
Sbjct: 497 NCDILGVSMFDSAEIRIHPTGSVIARMGTKSQGQGHETTYAQIIATEL 544
>pdb|1N5W|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N5W|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N60|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N60|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N61|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N61|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N62|B Chain B, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N62|E Chain E, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N63|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
pdb|1N63|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
Length = 809
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 123/528 (23%), Positives = 201/528 (38%), Gaps = 70/528 (13%)
Query: 601 SGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEF-KSESVPDVVTALLSYKDIPEGGQ 659
G+ YVDD+ P L+G F+ S+ ARIK I+ K++++P V A+L+ D+
Sbjct: 35 QGKGNYVDDVKLP-GMLFGDFVRSSHAHARIKSIDTSKAKALPGVF-AVLTAADLKPLNL 92
Query: 660 NIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXXXYE--------MGN 711
+ + + ADE Q VAFVVA + YE
Sbjct: 93 HYMPTLAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPVLVDPFKA 152
Query: 712 LEP--PILSVEEAVDRSS----LFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQY 765
+EP P+L E+ D+ + + + ++ +GD D AE+ +
Sbjct: 153 MEPDAPLLR-EDIKDKMTGAHGARKHHNHIFRWEIGD----KEGTDATFAKAEVVSKDMF 207
Query: 766 YFY------METQTALAVPDE-DNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRV 818
++ +ET +A D+ L ++ + Q P ++ G+PEH + VI +
Sbjct: 208 TYHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDI 267
Query: 819 GGAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNG 878
GG FG K + A +A+ L PV+ R ++ +T + +G
Sbjct: 268 GGGFGNK-VGAYSGYVCAVVASIVLGVPVKWVEDRMENLSTTSFARDYHMTTELAATKDG 326
Query: 879 KITALQLNILIDAG---LSPDVSPIMPSNMIGALKKYDWGALHFDIKVCRTNLPS----- 930
KI A++ ++L D G D S M YD H + TN S
Sbjct: 327 KILAMRCHVLADHGAFDACADPSKWPAGFMNICTGSYDMPVAHLAVDGVYTNKASGGVAY 386
Query: 931 RSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSL----NLFYESSAGEY 986
R + R + + E IE +A L M+ +R N + L +E +G Y
Sbjct: 387 RCSFRV---TEAVYAIERAIETLAQRLEMDSADLRIKNFIQPEQFPYMAPLGWEYDSGNY 443
Query: 987 AEYTLPLIWDKLAVSSSFNQ-RTEMIKE---FNRSNLWRKKGVCRLPIVHEVTLRSTPGK 1042
PL K + ++Q R E + F R G+ + E+ + + P K
Sbjct: 444 -----PLAMKKAMDTVGYHQLRAEQKAKQEAFKRGETREIMGIG-ISFFTEI-VGAGPSK 496
Query: 1043 --------------VSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFAL 1076
+ I GSV+ +G GQG T Q+ A L
Sbjct: 497 NCDILGVSMFDSAEIRIHPTGSVIARMGTKSQGQGHETTYAQIIATEL 544
>pdb|1SIJ|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A. Aor
Or Mop) Of Desulfovibrio Gigas Covalently Bound To
[aso3]-
pdb|1VLB|A Chain A, Structure Refinement Of The Aldehyde Oxidoreductase From
Desulfovibrio Gigas At 1.28 A
pdb|3FAH|A Chain A, Glycerol Inhibited Form Of Aldehyde Oxidoreductase From
Desulfovibrio Gigas
pdb|3FC4|A Chain A, Ethylene Glycol Inhibited Form Of Aldehyde Oxidoreductase
From Desulfovibrio Gigas
pdb|3L4P|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A. Aor
Or Mop) Of Desulfovibrio Gigas Covalently Bound To
[aso3]-
Length = 907
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 115/532 (21%), Positives = 206/532 (38%), Gaps = 43/532 (8%)
Query: 613 PINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSKTIFGS--- 669
P L+ A + + A IKGI+ V +++++KD+ +G I F +
Sbjct: 204 PAGTLHLAMVQAKVSHANIKGIDTSEALTMPGVHSVITHKDV-KGKNRITGLITFPTNKG 262
Query: 670 ----EPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXXXYEMGNLEPPILSVEEAVDR 725
P+ DE G +A V ADS+ N E P +S A
Sbjct: 263 DGWDRPILCDEKVFQYGDCIALVCADSEANARAAAEKVKVDLEE---LPAYMSGPAAAAE 319
Query: 726 SSLFE---VPSFLYPKPV--GDISKGMNEADHRILAAEIKLGSQYYFYMETQTALA-VPD 779
++ P+ + +P+ G+ + + + + + +G Q + +E A A + D
Sbjct: 320 DAIEIHPGTPNVYFEQPIVKGEDTGPIFASADVTVEGDFYVGRQPHMPIEPDVAFAYMGD 379
Query: 780 EDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPVATA-CAL 838
+ C + SI + IA +G+ + ++ +GG FG K P + A A+
Sbjct: 380 DGKCYIHSKSIGVHLHLY-MIAPGVGLEPDQLVLVANPMGGTFG---YKFSPTSEALVAV 435
Query: 839 AAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVS 898
AA RPV + + G R P ++ K +G + A++ + L+D G +
Sbjct: 436 AAMATGRPVHLRYNYQQQQQYTGKRSPWEMNVKFAAKKDGTLLAMESDWLVDHGPYSEFG 495
Query: 899 PIMP---SNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVAS 955
++ + IGA Y+ + + TN SA R G Q F +E +++ +A
Sbjct: 496 DLLTLRGAQFIGA--GYNIPNIRGLGRTVATNHVWGSAFRGYGAPQSMFASECLMDMLAE 553
Query: 956 TLSMEVDFVRNINLHTHKSLNLFYESSAGEYAEYTLPLIWDKLAVSSSFNQRTEMIKEFN 1015
L M+ +R N + N + E ++LP + D+L + + K
Sbjct: 554 KLGMDPLELRYKNAYRPGDTN----PTGQEPEVFSLPDMIDQL----RPKYQAALEKAQK 605
Query: 1016 RSNLWRKKGVCRLPIVHEVTL---RSTPGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMA 1072
S KKGV V+ L ++ + +DG++ V + GQG A
Sbjct: 606 ESTATHKKGVGISIGVYGSGLDGPDASEAWAELNADGTITVHTAWEDHGQGADIGCVGTA 665
Query: 1073 AFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASCQVVRDCC 1124
AL + G EK++ +T + G + GS + +R C
Sbjct: 666 HEALRPM-----GVAPEKIKFTWPNTATTPNSGPSGGSRQQVMTGNAIRVAC 712
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 22/134 (16%)
Query: 39 CGACVVLLSKYNPELDQLEDFTISSCLTLLCSV-NGCLITTSEGLGNSKTGFHPIHQRFA 97
CGAC V+L + + +C+T + V +G ITT EG+G + HP+ + +
Sbjct: 45 CGACSVIL----------DGKVVRACVTKMKRVADGAQITTIEGVGQPEN-LHPLQKAWV 93
Query: 98 GFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYR 157
+QCGFC+PG +S L R + K N CRCTGY+
Sbjct: 94 LHGGAQCGFCSPGFIVSAKGLLDTNADPSREDVRDWFQKHR----------NACRCTGYK 143
Query: 158 PIADACKSFAADVD 171
P+ DA AA ++
Sbjct: 144 PLVDAVMDAAAVIN 157
>pdb|1DGJ|A Chain A, Crystal Structure Of The Aldehyde Oxidoreductase From
Desulfovibrio Desulfuricans Atcc 27774
Length = 907
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 125/563 (22%), Positives = 214/563 (38%), Gaps = 47/563 (8%)
Query: 588 GEPITKSGAALQASGEAIYVDD--IPSPINCLYGAFIYSTKPLARIKGIEF-KSESVPDV 644
G I + A + +G A + D + P N L+ A + A IKGI+ ++E +P V
Sbjct: 177 GSSIPRPSAVAKVTGLAEFGADAALRMPENTLHLALAQAKVSHALIKGIDTSEAEKMPGV 236
Query: 645 VTALLSYKDIPEGGQNIGSKTIFGS-------EPLFADELTRCAGQPVAFVVADSQKNXX 697
+L++KD+ +G I F + P+ D G +A V ADS+ N
Sbjct: 237 YK-VLTHKDV-KGKNRITGLITFPTNKGDGWERPILNDSKIFQYGDALAIVCADSEANAR 294
Query: 698 XXXXXXXXXYEMGNLEPPILSVEEAVDRSSLF---EVPSFLYPK---PVGDISKGMNEAD 751
E L P +S EA+ ++ P+ Y + D N+
Sbjct: 295 AAAEKVKFDLE---LLPEYMSAPEAMAPDAIEIHPGTPNVYYDQLEEKGEDTVPFFNDPA 351
Query: 752 HRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIP-EHN 810
+ + Q + +E +E +V++S IA LG+ +
Sbjct: 352 NVVAEGSYYTQRQPHLPIEPDVGYGYINEQGQVVIHSKSVAIHLHALMIAPGLGLEFPKD 411
Query: 811 VRVITRRVGGAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITY 870
+ ++ GG FG K M A+ A RP + + G R P T
Sbjct: 412 LVLVQNTTGGTFGYKFSPTMEALVGVAVMA--TGRPCHLRYNYEQQQNYTGKRSPFWTTM 469
Query: 871 SVGFKSNGKITALQLNILIDAGLSPDVSPIMP---SNMIGALKKYDWGALHFDIKVCRTN 927
GKI A++ + +D G + ++ + IGA Y + + TN
Sbjct: 470 RYAADRQGKILAMETDWSVDHGPYSEFGDLLTLRGAQYIGA--GYGIANIRGTGRTVATN 527
Query: 928 LPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLFYESSAGEYA 987
+A R G + F +E +++ +A L M+ +R +N + +S+G+
Sbjct: 528 HCWGAAFRGYGAPESEFPSEVLMDELAEKLGMDPFELRALNCYREGDT-----TSSGQIP 582
Query: 988 E-YTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVTL---RSTPGKV 1043
E +LP ++DK+ + + + +KE RS K+GV V+ L ++ V
Sbjct: 583 EVMSLPEMFDKM--RPYYEESKKRVKE--RSTAEIKRGVGVALGVYGAGLDGPDTSEAWV 638
Query: 1044 SILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQ 1103
+ DGSV + + GQG A AL + G E + +V DT
Sbjct: 639 ELNDDGSVTLGNSWEDHGQGADAGSLGTAHEALRPL-----GITPENIHLVMNDTSKTPN 693
Query: 1104 GGFTAGSTTSEASCQVVRDCCNI 1126
G GS + + +R C +
Sbjct: 694 SGPAGGSRSQVVTGNAIRVACEM 716
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 23/150 (15%)
Query: 21 VITLALRVSSSVVVKASG-CGACVVLLSKYNPELDQLEDFTISSCLTLLCSV-NGCLITT 78
V+ L+++S V G CGAC V+L + + +C+ + V +TT
Sbjct: 26 VLRSQLQLTSVKVGCGKGQCGACTVIL----------DGKVVRACIIKMSRVAENASVTT 75
Query: 79 SEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLT 138
EG+G HP+ + A+QCGFCTPG +S + L + R + K
Sbjct: 76 LEGIGAPDC-LHPLQHAWIQHGAAQCGFCTPGFIVSAKALLDENVAPSREDVRDWFQKHH 134
Query: 139 ISEAEKAIAGNLCRCTGYRPIADACKSFAA 168
N+CRCTGY+P+ DA AA
Sbjct: 135 ----------NICRCTGYKPLVDAVMDAAA 154
>pdb|1FIQ|B Chain B, Crystal Structure Of Xanthine Oxidase From Bovine Milk
Length = 350
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/353 (21%), Positives = 147/353 (41%), Gaps = 38/353 (10%)
Query: 225 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEH--YDKYIDIRYIPELSV 282
+W +++EL ++ + +KLV GNT +G + ++ + I +IPEL+
Sbjct: 16 TWIQASTLKELLDL-----KAQHPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNA 70
Query: 283 IRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVG 342
+ GI GA +S + L E + ++ VF+ + + A + +++ AS+G
Sbjct: 71 VEHGPEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLG 130
Query: 343 GNLVMAQRKHFPSDVATVLLGAGAMVNIMT-GQKCEKLMLEEFL---ERPPLDSRSILLS 398
GN++ A SD+ V + +G + I++ G + M F + L ILLS
Sbjct: 131 GNIITASPI---SDLNPVFMASGTKLTIVSRGTRRTVPMDHTFFPSYRKTLLGPEEILLS 187
Query: 399 VEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNN 458
+EIP + F ++ A R + + + P ++V
Sbjct: 188 IEIPY----------SREDEFFSAFKQASR-REDDIAKVTCGMRVLFQP----GSMQVKE 232
Query: 459 CRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRD--SVVPEDGTSIPAYRSS 516
L +G + I A + + K N +L + L + S+ P+ + +R +
Sbjct: 233 LALCYGGMADR-TISALKTTQKQLSKFWNEKLLQDVCAGLAEELSLSPDAPGGMIEFRRT 291
Query: 517 LAVGFLYEFFGSLTEMKNGISRDWLCG-----YSNNVSLKDSHVQQNHKQFDE 564
L + F ++F+ ++ + S+D CG Y++ L H N + F E
Sbjct: 292 LTLSFFFKFYLTVLKKLGKDSKD-KCGKLDPTYTSATLLFQKHPPANIQLFQE 343
>pdb|3B9J|B Chain B, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
pdb|3B9J|J Chain J, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
Length = 350
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 138/327 (42%), Gaps = 33/327 (10%)
Query: 225 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEH--YDKYIDIRYIPELSV 282
+W +++EL ++ + +KLV GNT +G + ++ + I +IPEL+
Sbjct: 16 TWIQASTLKELLDL-----KAQHPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNA 70
Query: 283 IRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVG 342
+ GI GA +S + L E + ++ VF+ + + A + +++ AS+G
Sbjct: 71 VEHGPEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLG 130
Query: 343 GNLVMAQRKHFPSDVATVLLGAGAMVNIMT-GQKCEKLMLEEFL---ERPPLDSRSILLS 398
GN++ A SD+ V + +G + I++ G + M F + L ILLS
Sbjct: 131 GNIITASPI---SDLNPVFMASGTKLTIVSRGTRRTVPMDHTFFPSYRKTLLGPEEILLS 187
Query: 399 VEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNN 458
+EIP + F ++ A R + + + P ++V
Sbjct: 188 IEIPY----------SREDEFFSAFKQASR-REDDIAKVTCGMRVLFQP----GSMQVKE 232
Query: 459 CRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRD--SVVPEDGTSIPAYRSS 516
L +G + I A + + K N +L + L + S+ P+ + +R +
Sbjct: 233 LALCYGGMADR-TISALKTTQKQLSKFWNEKLLQDVCAGLAEELSLSPDAPGGMIEFRRT 291
Query: 517 LAVGFLYEFFGSLTEMKNGISRDWLCG 543
L + F ++F+ ++ + S+D CG
Sbjct: 292 LTLSFFFKFYLTVLKKLGKDSKD-KCG 317
>pdb|1T3Q|B Chain B, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
pdb|1T3Q|E Chain E, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
Length = 788
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 106/448 (23%), Positives = 170/448 (37%), Gaps = 41/448 (9%)
Query: 670 EPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXXXYEMGNLEPPILSVEEAVDRSSLF 729
+PL A+ +TR G+ VA VVA S+ YE P + +E A++ +
Sbjct: 101 QPLLANGVTRFVGEIVAVVVASSRAIAEDAAQLIQVEYEE---LPAVTGIEAALEGEA-- 155
Query: 730 EVPSFLYPKPVGDISKGMNE------ADHRILAAEIKLGSQYYFYMETQTALAVPD-EDN 782
L V S+ +E + ++ + G MET+ A+A +
Sbjct: 156 RANDTLAGNVVSRTSRARDELAPIFASSAGVVRGQFSCGRVSACPMETRGAVAQYEWTTQ 215
Query: 783 CLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPVATACALAAYK 842
L+++++ Q P +A IPEH + V VGG FG KA P L +
Sbjct: 216 QLILWTATQMPSFVRTMVAMFCAIPEHLIEVRVPDVGGGFGQKA-HLHPEELLVCLLSRA 274
Query: 843 LCRPVRIYVKRKTDMIMVGGRHPMKITYSVG--FKSNGKITALQLNILIDAGLSPDV--S 898
L RPVR R+ + + G H + +G F +G+ AL+ + D G ++ +
Sbjct: 275 LGRPVRWIEDRQENFL--GATHAKQQRNEMGLAFDGDGRFLALENRSITDGGAYNNLPWT 332
Query: 899 PIMPSNMIGA--LKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVAST 956
++ S++ A L Y A+ + TN A R G G E +I+ A
Sbjct: 333 QLVESHVGNAVILGVYKVPAVSEESIAVATNKCPIGAYRGVGFTAGQIARETLIDRAARQ 392
Query: 957 LSMEVDFVRNINLHTHKSL----NLFYESSAGEYAEYTLPLIWDKLAVSSSFNQRTEMIK 1012
L + +R N+ + L G Y + T+ L+ +++ +F QR +
Sbjct: 393 LGLSPFEIRRRNVVMPEDFPFTNRLGQTHREGTYLQ-TINLL-EEMVNPEAFRQRQAEAR 450
Query: 1013 EFNRS--------NLWRKKGVCRLPIVHEVTLRSTPGKVSILSDGSVVVEVGGIEMGQGL 1064
+ N G L + T V I G V V GQG
Sbjct: 451 ARGKYLGLGVSVFNEVTGTGTRTLSFLGTPTTTHDSATVRIDPTGKVTVTTSLASSGQGH 510
Query: 1065 WTKVKQMAAFALS------SIKCGGTGN 1086
T + Q+AA L I+ G T N
Sbjct: 511 ETTLAQIAADVLGVPASDVVIQAGSTKN 538
>pdb|3NVV|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVV|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVW|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVW|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVY|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVY|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
Length = 334
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 14/184 (7%)
Query: 225 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEH--YDKYIDIRYIPELSV 282
+W +++EL ++ + +KLV GNT +G + ++ + I +IPEL+
Sbjct: 41 TWIQASTLKELLDL-----KAQHPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNA 95
Query: 283 IRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVG 342
+ GI GA +S + L E + ++ VF+ + + A + +++ AS+G
Sbjct: 96 VEHGPEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLG 155
Query: 343 GNLVMAQRKHFPSDVATVLLGAGAMVNIMT-GQKCEKLMLEEFL---ERPPLDSRSILLS 398
GN++ A SD+ V + +G + I++ G + M F + L ILLS
Sbjct: 156 GNIITASPI---SDLNPVFMASGTKLTIVSRGTRRTVPMDHTFFPSYRKTLLGPEEILLS 212
Query: 399 VEIP 402
+EIP
Sbjct: 213 IEIP 216
>pdb|3ETR|B Chain B, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3ETR|M Chain M, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3EUB|B Chain B, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|K Chain K, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|T Chain T, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|3 Chain 3, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3NRZ|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NRZ|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NS1|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NS1|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NVZ|B Chain B, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3NVZ|K Chain K, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3SR6|B Chain B, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
pdb|3SR6|K Chain K, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
Length = 305
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 14/184 (7%)
Query: 225 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEH--YDKYIDIRYIPELSV 282
+W +++EL ++ + +KLV GNT +G + ++ + I +IPEL+
Sbjct: 12 TWIQASTLKELLDL-----KAQHPEAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNA 66
Query: 283 IRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVG 342
+ GI GA +S + L E + ++ VF+ + + A + +++ AS+G
Sbjct: 67 VEHGPEGISFGAACALSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLG 126
Query: 343 GNLVMAQRKHFPSDVATVLLGAGAMVNIMT-GQKCEKLMLEEFL---ERPPLDSRSILLS 398
GN++ A SD+ V + +G + I++ G + M F + L ILLS
Sbjct: 127 GNIITASPI---SDLNPVFMASGTKLTIVSRGTRRTVPMDHTFFPSYRKTLLGPEEILLS 183
Query: 399 VEIP 402
+EIP
Sbjct: 184 IEIP 187
>pdb|1FFU|B Chain B, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of The
Molybdenum Cofactor
pdb|1FFU|E Chain E, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of The
Molybdenum Cofactor
pdb|1FFV|B Chain B, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
pdb|1FFV|E Chain E, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
Length = 803
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 124/566 (21%), Positives = 209/566 (36%), Gaps = 85/566 (15%)
Query: 602 GEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNI 661
G+ YVDDI P L+ + + RIK I + V A+L+ +D+ +
Sbjct: 33 GKGNYVDDIKMP-GMLHMDIVRAPIAHGRIKKIHKDAALAMPGVHAVLTAEDLKPLKLHW 91
Query: 662 GSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNXXXXXXXXXXXYE--------MGNLE 713
+ ADE Q VA V+AD + Y+ + L+
Sbjct: 92 MPTLAGDVAAVLADEKVHFQMQEVAIVIADDRYIAADAVEAVKVEYDELPVVIDPIDALK 151
Query: 714 P--PILSVEEAVDRSSLFEVP----SFLYPKPVGDISKGMNEADHRILAAEIKLGSQYYF 767
P P+L E+ ++S P + ++ GD K +A + A SQ+ +
Sbjct: 152 PDAPVLR-EDLAGKTSGAHGPREHHNHIFTWGAGD--KAATDA---VFANAPVTVSQHMY 205
Query: 768 Y-------METQTALAVPDE-DNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVG 819
Y +ET +A D L Y + Q P ++ GIPE VR+++ +G
Sbjct: 206 YPRVHPCPLETCGCVASFDPIKGDLTTYITSQAPHVVRTVVSMLSGIPESKVRIVSPDIG 265
Query: 820 GAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGK 879
G FG K + P +A+ L RPV+ R ++ + + +GK
Sbjct: 266 GGFGNK-VGIYPGYVCAIVASIVLGRPVKWVEDRVENISTTAFARDYHMDGELAATPDGK 324
Query: 880 ITALQLNILIDAGLSPDVSPIMPSNMIGAL-----KKYDWGALHFDIKVCRTNLPSRSAM 934
I L++N++ D G + P+ L YD H +K TN
Sbjct: 325 ILGLRVNVVADHGAFDACAD--PTKFPAGLFHICSGSYDIPRAHCSVKGVYTN------- 375
Query: 935 RAPGEV---------QGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSL----NLFYES 981
+APG V + ++ E +++ +A L+M+ +R N + +E
Sbjct: 376 KAPGGVAYXXSFRVTEAVYLIERMVDVLAQKLNMDKAEIRAKNFIRKEQFPYTTQFGFEY 435
Query: 982 SAGEYAEYTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVTLRSTPG 1041
+G+Y L + D + + ++ + N L V +V + P
Sbjct: 436 DSGDY-HTALKKVLDAVDYPALRAEQAARRADPNSPTLMGIGLVTFTEVV-----GAGPS 489
Query: 1042 K--------------VSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNL 1087
K + I GS + +G I GQG T Q+ A L G
Sbjct: 490 KMCDILGVGMFDSCEIRIHPTGSAIARMGTITQGQGHQTTYAQIIATEL--------GIP 541
Query: 1088 LEKVRVVQADTLSVIQGGFTAGSTTS 1113
E ++V + DT + G T GS ++
Sbjct: 542 SEVIQVEEGDTSTAPYGLGTYGSRST 567
>pdb|3HRD|D Chain D, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|H Chain H, Crystal Structure Of Nicotinate Dehydrogenase
Length = 160
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 59/122 (48%), Gaps = 25/122 (20%)
Query: 39 CGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLG-NSKTGFHPIHQRFA 97
CGAC V+ + +P +++C L + I T EG+ + K + Q F
Sbjct: 47 CGACTVIFNG-DP---------VTTCCMLAGQADESTIITLEGVAEDGKPSL--LQQCFL 94
Query: 98 GFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYR 157
A QCG+CTPGM ++ AL+D P+P T E A++GNLCRCTGY
Sbjct: 95 EAGAVQCGYCTPGMILT-AKALLD----KNPDP-------TDEEITVAMSGNLCRCTGYI 142
Query: 158 PI 159
I
Sbjct: 143 KI 144
>pdb|1T3Q|C Chain C, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
pdb|1T3Q|F Chain F, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
Length = 288
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 118/273 (43%), Gaps = 53/273 (19%)
Query: 225 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMG--YYKEVEHYDKYIDIRYIPELSV 282
S+ +P S+QE+ VL ++ ++++AG + + + +D+R + EL
Sbjct: 7 SYRAPASLQEVIQVL-----ADDPDARIIAGGQSLLPLLAFRLVYPSCLVDLRNVSELFE 61
Query: 283 IRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVG 342
I + + +GA VT + +T ++ + + K+ H +A + +RN ++G
Sbjct: 62 ISQSAGILSVGAMVT------HFRNKTDPTVAKCVPILPKVLAH---VAHQAVRNRGTLG 112
Query: 343 GNLVMAQR-KHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLER---PPLDSRSILLS 398
G+L A P +AT+ GA + I + + +F++ L++ +L+
Sbjct: 113 GSLAHADAGAEMPFLMATL----GATMYIASSAGVRSVSATDFMKGHYFTDLEAGEVLVR 168
Query: 399 VEIPC----WDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGI 454
VEIP W+ F+ Y R G+ + AA L + G
Sbjct: 169 VEIPIPALHWE--------------FDEY---ARRKGDYALVMAAAGL-------SMQGG 204
Query: 455 RVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLN 487
R R+A GA + A +A R +FL GKV++
Sbjct: 205 RCVAARIALGAV-EERAHQAIRANDFLVGKVID 236
>pdb|3HRD|C Chain C, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|G Chain G, Crystal Structure Of Nicotinate Dehydrogenase
Length = 296
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/279 (20%), Positives = 110/279 (39%), Gaps = 28/279 (10%)
Query: 226 WHSPISVQELRNVLESVEGSNQISSKLVAGNTGM--GYYKEVEHYDKYIDIRYIPELSVI 283
+ +P +++E + +L + + ++AG T + E D IDI+ + EL I
Sbjct: 6 FFAPKTLEEAKGLLHQYK---DVPPAIIAGGTDLVIEINDRWEKPDVVIDIKKLKELEYI 62
Query: 284 RRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGG 343
R ++ I IGA T ++ E F + K A ++ S IRN ++GG
Sbjct: 63 RVEENTIHIGALSTFTQI------ENHPFIRSHVRALYKAAS---QVGSPQIRNLGTIGG 113
Query: 344 NLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLERPPLDSRSILLSVEIPC 403
NL + D + + A V + + + ++ L +F + R+ L + EI
Sbjct: 114 NLSTSS---VAGDGVSAMTTLDATVVLESVRGTRQMKLTDFFDGEGFKRRNALEADEI-- 168
Query: 404 WDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAF 463
+T + ++ Y+ A R L + + K D +
Sbjct: 169 --MTEVIIDRPDAHSASAFYKLAKR------KSLAISVIGGGMAVKVDDAGVCTWASMRG 220
Query: 464 GAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSV 502
G G ++ + ++ EE L G L + + +L D+V
Sbjct: 221 GCIG-RYPLHFKQAEEMLVGAPLTMETMEATLPILHDTV 258
>pdb|3HRD|B Chain B, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|F Chain F, Crystal Structure Of Nicotinate Dehydrogenase
Length = 330
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 1043 VSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVI 1102
V I DGS V G ++GQG T + Q+AA L G EK+ V DT+
Sbjct: 28 VEIHGDGSANVMFGAADIGQGSGTAMAQIAAEEL--------GLDYEKIHVTWGDTMVTP 79
Query: 1103 QGGFTAGSTTSEASCQVVRDCC 1124
GG T+ S + + V C
Sbjct: 80 DGGATSASRQTLITGNAVILAC 101
>pdb|1FFU|C Chain C, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFU|F Chain F, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
Length = 287
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 21/125 (16%)
Query: 226 WHSPISVQELRNVLESVEGSNQISSKLVAGNTGMG-----YYKEVEHYDKYIDIRYIPEL 280
+H+P SV E +L + GS+ +KL+AG + + + EH IDI IPEL
Sbjct: 8 YHAPKSVGEAVALLGQL-GSD---AKLLAGGHSLLPMMKLRFAQPEHL---IDINRIPEL 60
Query: 281 SVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSAS 340
IR + + + IGA + I + + + +A + IA +RN +
Sbjct: 61 RGIREEGSTVVIGAMTVENDLISSPIVQAR---------LPLLAEAAKLIADPQVRNRGT 111
Query: 341 VGGNL 345
+GG++
Sbjct: 112 IGGDI 116
>pdb|1FFV|C Chain C, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
pdb|1FFV|F Chain F, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
Length = 287
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 21/125 (16%)
Query: 226 WHSPISVQELRNVLESVEGSNQISSKLVAGNTGMG-----YYKEVEHYDKYIDIRYIPEL 280
+H+P SV E +L + GS+ +KL+AG + + + EH IDI IPEL
Sbjct: 8 YHAPKSVGEAVALLGQL-GSD---AKLLAGGHSLLPMMKLRFAQPEHL---IDINRIPEL 60
Query: 281 SVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSAS 340
IR + + + IGA + I + + + +A + IA +RN +
Sbjct: 61 RGIREEGSTVVIGAMTVENDLISSPIVQAR---------LPLLAEAAKLIADPQVRNRGT 111
Query: 341 VGGNL 345
+GG++
Sbjct: 112 IGGDI 116
>pdb|3A0R|A Chain A, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
Length = 349
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 16/143 (11%)
Query: 269 DKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAGHME 328
++Y +IR+ P R +T + G +TI E K E + E L I G M
Sbjct: 85 ERYFNIRFSP----FRNAKTQLLEGVIITIDDVTELYKYEEERKRRERL----SILGEMT 136
Query: 329 KIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCE-KLMLEEFLER 387
+ IRN ++ G +M +KH D T+ +NI+T + + +++E LE
Sbjct: 137 ARVAHEIRNPITIIGGFIMRMKKHL-DDPETL----KKYINIITNELSRLETIVKEILEY 191
Query: 388 PPLDSRSILLSVEIPCWDLTRNV 410
R +L E +L R V
Sbjct: 192 S--KERQVLEFTEFNLNELIREV 212
>pdb|3B8A|X Chain X, Crystal Structure Of Yeast Hexokinase Pi In Complex With
Glucose
Length = 485
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 54/140 (38%), Gaps = 24/140 (17%)
Query: 514 RSSLAVGFLYEFFGSLTEMKNGISRDWLCGYS-NNVSLKDS-HVQQNHKQFDESKVPTLL 571
+ +L +GF + + S ++ GI + W G+ NV D + QN E + +
Sbjct: 148 KDTLPLGFTFSYPASQNKINEGILQRWTKGFDIPNVEGHDVVPLLQNEISKRELPIEIVA 207
Query: 572 SSAEQVVQLSREYYPVGEPITKSGAALQASG---------------EAIYVDDIPS---- 612
+ V L YY +P TK G +G E DDIPS
Sbjct: 208 LINDTVGTLIASYYT--DPETKMGVIF-GTGVNGAFYDVVSDIEKLEGKLADDIPSNSPM 264
Query: 613 PINCLYGAFIYSTKPLARIK 632
INC YG+F L R K
Sbjct: 265 AINCEYGSFDNEHLVLPRTK 284
>pdb|1S7J|A Chain A, Crystal Structure Of Phenazine Biosynthesis Protein Phzf
Family (Enterococcus Faecalis)
pdb|1S7J|B Chain B, Crystal Structure Of Phenazine Biosynthesis Protein Phzf
Family (Enterococcus Faecalis)
Length = 262
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 1139 QGQMGNVEWETLIQQVHICSSEALSTEFILFNF 1171
+GQ + W T +++ +C L+T F+LFN+
Sbjct: 53 EGQSYALRWFTPEREIDLCGHATLATAFVLFNY 85
>pdb|1IG8|A Chain A, Crystal Structure Of Yeast Hexokinase Pii With The Correct
Amino Acid Sequence
Length = 486
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 60/161 (37%), Gaps = 30/161 (18%)
Query: 493 EAIKLLRDSVVPEDGTSIPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYS-NNVSLK 551
+++K D P+ G S P + +GF + F S ++ GI + W G+ N+
Sbjct: 133 DSLKAFIDEQFPQ-GISEP-----IPLGFTFSFPASQNKINEGILQRWTKGFDIPNIENH 186
Query: 552 DSHVQQNHKQFDESKVPTLLSS--AEQVVQLSREYYPVGEPITKSGAALQASGEAIYVD- 608
D V KQ + +P + + + L YY +P TK G Y D
Sbjct: 187 DV-VPMLQKQITKRNIPIEVVALINDTTGTLVASYY--TDPETKMGVIFGTGVNGAYYDV 243
Query: 609 -------------DIPS----PINCLYGAFIYSTKPLARIK 632
DIP INC YG+F L R K
Sbjct: 244 CSDIEKLQGKLSDDIPPSAPMAINCEYGSFDNEHVVLPRTK 284
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,167,944
Number of Sequences: 62578
Number of extensions: 1334425
Number of successful extensions: 3008
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2795
Number of HSP's gapped (non-prelim): 74
length of query: 1185
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1075
effective length of database: 8,089,757
effective search space: 8696488775
effective search space used: 8696488775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)