Query 001024
Match_columns 1185
No_of_seqs 490 out of 4170
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 13:42:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00192 aldehyde oxidase 100.0 3E-225 8E-230 2174.5 116.8 1139 3-1170 20-1162(1344)
2 KOG0430 Xanthine dehydrogenase 100.0 2E-224 4E-229 1996.7 89.8 1065 7-1170 21-1092(1257)
3 PLN02906 xanthine dehydrogenas 100.0 2E-218 4E-223 2111.9 112.4 1079 7-1170 2-1132(1319)
4 TIGR02969 mam_aldehyde_ox alde 100.0 7E-217 2E-221 2094.5 110.8 1081 2-1168 16-1135(1330)
5 PRK09800 putative hypoxanthine 100.0 2E-137 4E-142 1307.3 75.5 562 585-1170 170-806 (956)
6 TIGR03313 Se_sel_red_Mo probab 100.0 3E-135 6E-140 1289.2 74.5 562 585-1170 166-802 (951)
7 TIGR03311 Se_dep_Molyb_1 selen 100.0 6E-133 1E-137 1261.1 69.3 507 587-1134 162-681 (848)
8 COG4631 XdhB Xanthine dehydrog 100.0 2E-115 4E-120 974.2 44.1 565 585-1170 17-603 (781)
9 TIGR02965 xanthine_xdhB xanthi 100.0 1E-112 2E-117 1072.3 62.1 564 587-1170 1-586 (758)
10 TIGR03194 4hydrxCoA_A 4-hydrox 100.0 5E-109 1E-113 1036.2 58.7 548 591-1168 1-584 (746)
11 PRK09970 xanthine dehydrogenas 100.0 1E-108 3E-113 1036.4 60.4 560 586-1170 2-606 (759)
12 TIGR02416 CO_dehy_Mo_lg carbon 100.0 1E-107 3E-112 1027.4 61.1 558 595-1170 1-622 (770)
13 TIGR03196 pucD xanthine dehydr 100.0 1E-107 2E-112 1025.8 57.3 532 586-1140 2-561 (768)
14 COG4630 XdhA Xanthine dehydrog 100.0 2E-103 4E-108 850.5 30.3 452 3-533 23-482 (493)
15 TIGR02963 xanthine_xdhA xanthi 100.0 5E-100 1E-104 904.6 47.3 445 2-528 14-466 (467)
16 COG1529 CoxL Aerobic-type carb 100.0 1.1E-78 2.3E-83 759.7 52.0 558 584-1170 3-584 (731)
17 PF02738 Ald_Xan_dh_C2: Molybd 100.0 6E-79 1.3E-83 747.9 37.2 419 737-1170 17-446 (547)
18 PRK09971 xanthine dehydrogenas 100.0 1.1E-52 2.3E-57 474.4 28.7 275 225-533 6-287 (291)
19 TIGR03195 4hydrxCoA_B 4-hydrox 100.0 5E-50 1.1E-54 452.5 28.5 274 223-530 4-320 (321)
20 TIGR03199 pucC xanthine dehydr 100.0 8.7E-50 1.9E-54 445.3 26.1 258 229-523 1-263 (264)
21 COG1319 CoxM Aerobic-type carb 100.0 3.2E-48 6.9E-53 427.1 22.7 274 223-533 3-283 (284)
22 PRK09799 putative oxidoreducta 100.0 8E-46 1.7E-50 410.4 25.9 249 225-532 4-254 (258)
23 TIGR03193 4hydroxCoAred 4-hydr 100.0 9.2E-47 2E-51 374.5 14.4 135 2-167 14-148 (148)
24 TIGR03312 Se_sel_red_FAD proba 100.0 4.3E-45 9.3E-50 404.1 25.4 252 224-533 2-254 (257)
25 PRK09908 xanthine dehydrogenas 100.0 3.3E-46 7.2E-51 374.2 14.4 135 2-167 21-156 (159)
26 TIGR03198 pucE xanthine dehydr 100.0 2.4E-45 5.1E-50 367.9 14.2 135 2-168 16-150 (151)
27 COG2080 CoxS Aerobic-type carb 100.0 3.1E-45 6.8E-50 362.1 13.5 138 1-168 15-152 (156)
28 PRK11433 aldehyde oxidoreducta 100.0 1.4E-43 3E-48 371.7 14.1 148 2-169 64-215 (217)
29 PF00941 FAD_binding_5: FAD bi 100.0 5E-37 1.1E-41 320.7 14.5 165 223-404 2-171 (171)
30 PF01799 Fer2_2: [2Fe-2S] bind 100.0 4.2E-30 9.1E-35 228.0 6.6 75 78-165 1-75 (75)
31 PF01315 Ald_Xan_dh_C: Aldehyd 99.9 4.6E-28 1E-32 234.6 7.6 107 601-712 1-110 (111)
32 COG1529 CoxL Aerobic-type carb 99.7 2.4E-19 5.3E-24 225.8 -0.0 433 578-1082 176-643 (731)
33 PF03450 CO_deh_flav_C: CO deh 99.7 2.2E-16 4.8E-21 151.6 12.0 101 422-529 2-103 (103)
34 PRK12386 fumarate reductase ir 98.7 8.7E-09 1.9E-13 113.7 5.9 69 2-84 25-93 (251)
35 PF13085 Fer2_3: 2Fe-2S iron-s 98.2 2.1E-06 4.7E-11 82.7 5.9 69 2-84 24-94 (110)
36 PRK05950 sdhB succinate dehydr 98.1 1.8E-06 4E-11 95.2 5.0 65 5-84 27-91 (232)
37 TIGR00384 dhsB succinate dehyd 98.1 3.2E-06 7E-11 92.6 5.1 68 2-84 20-87 (220)
38 PRK12576 succinate dehydrogena 98.1 2.8E-06 6E-11 96.0 4.4 69 2-84 30-100 (279)
39 PRK12385 fumarate reductase ir 97.6 5.3E-05 1.2E-09 84.1 5.0 67 2-84 30-96 (244)
40 PRK13552 frdB fumarate reducta 97.4 0.00016 3.4E-09 80.1 5.4 68 2-84 29-96 (239)
41 COG0479 FrdB Succinate dehydro 97.1 0.00045 9.7E-09 75.3 4.9 68 2-84 25-92 (234)
42 PRK12577 succinate dehydrogena 97.1 0.0019 4.2E-08 75.0 10.2 69 2-84 24-101 (329)
43 PLN00129 succinate dehydrogena 97.1 0.00053 1.1E-08 77.0 5.1 64 6-84 72-135 (276)
44 PRK12575 succinate dehydrogena 97.0 0.00069 1.5E-08 74.7 5.3 62 6-84 33-94 (235)
45 PRK07570 succinate dehydrogena 96.8 0.0014 3.1E-08 72.9 5.1 67 3-83 27-103 (250)
46 PRK08640 sdhB succinate dehydr 96.7 0.002 4.2E-08 71.9 5.2 68 1-84 27-101 (249)
47 PF01565 FAD_binding_4: FAD bi 96.2 0.0081 1.8E-07 60.7 6.1 106 225-350 3-109 (139)
48 PRK13905 murB UDP-N-acetylenol 96.1 0.034 7.4E-07 63.9 11.5 163 217-406 24-192 (298)
49 TIGR01676 GLDHase galactonolac 95.8 0.016 3.5E-07 71.0 7.2 107 223-350 62-168 (541)
50 PRK06259 succinate dehydrogena 95.6 0.018 3.9E-07 70.9 6.4 62 3-80 27-88 (486)
51 COG0277 GlcD FAD/FMN-containin 95.5 0.021 4.5E-07 69.6 6.7 109 223-350 32-140 (459)
52 PRK09970 xanthine dehydrogenas 95.5 0.25 5.5E-06 64.1 16.5 60 768-827 457-528 (759)
53 PRK11230 glycolate oxidase sub 95.3 0.033 7.2E-07 68.5 7.5 108 224-349 57-164 (499)
54 PRK14652 UDP-N-acetylenolpyruv 95.2 0.097 2.1E-06 60.3 10.4 162 217-405 29-194 (302)
55 PRK14650 UDP-N-acetylenolpyruv 95.0 0.23 5E-06 56.9 12.6 162 217-405 26-193 (302)
56 PLN02465 L-galactono-1,4-lacto 94.9 0.14 3E-06 63.5 11.0 157 223-405 97-262 (573)
57 TIGR00387 glcD glycolate oxida 94.8 0.032 6.9E-07 67.2 5.2 105 227-349 2-106 (413)
58 PRK13906 murB UDP-N-acetylenol 94.8 0.23 5E-06 57.3 11.9 155 223-405 37-196 (307)
59 PLN02805 D-lactate dehydrogena 94.5 0.053 1.1E-06 67.4 6.1 107 224-350 135-241 (555)
60 TIGR00179 murB UDP-N-acetyleno 94.4 0.14 3.1E-06 58.4 8.8 159 218-403 7-172 (284)
61 TIGR01678 FAD_lactone_ox sugar 94.3 0.083 1.8E-06 64.0 7.1 106 224-350 16-121 (438)
62 PRK11183 D-lactate dehydrogena 94.0 0.062 1.4E-06 65.3 5.1 111 223-351 39-154 (564)
63 TIGR01679 bact_FAD_ox FAD-link 93.7 0.15 3.1E-06 61.7 7.6 103 224-350 13-115 (419)
64 TIGR01677 pln_FAD_oxido plant- 93.5 0.36 7.7E-06 60.1 10.7 161 223-405 32-210 (557)
65 PRK12436 UDP-N-acetylenolpyruv 93.2 0.62 1.4E-05 53.8 11.4 155 223-405 37-196 (305)
66 PRK08493 NADH dehydrogenase su 92.9 0.09 2E-06 67.8 4.3 65 32-110 37-102 (819)
67 PRK00046 murB UDP-N-acetylenol 92.5 0.95 2.1E-05 52.7 11.6 84 217-307 14-103 (334)
68 PF13510 Fer2_4: 2Fe-2S iron-s 92.3 0.18 3.8E-06 46.5 4.3 37 31-79 43-80 (82)
69 PRK14653 UDP-N-acetylenolpyruv 91.8 0.49 1.1E-05 54.3 8.1 110 217-350 27-137 (297)
70 PRK13903 murB UDP-N-acetylenol 91.5 0.82 1.8E-05 53.9 9.7 85 217-307 26-113 (363)
71 COG0812 MurB UDP-N-acetylmuram 90.1 2.9 6.3E-05 47.6 11.9 159 218-405 15-182 (291)
72 PRK12814 putative NADPH-depend 89.7 0.26 5.7E-06 62.9 3.8 57 34-108 42-101 (652)
73 cd00207 fer2 2Fe-2S iron-sulfu 89.6 0.24 5.3E-06 45.2 2.5 39 30-68 31-77 (84)
74 PRK14651 UDP-N-acetylenolpyruv 89.4 2.7 5.8E-05 47.7 11.0 154 217-406 14-170 (273)
75 PRK14649 UDP-N-acetylenolpyruv 89.2 0.69 1.5E-05 53.1 6.4 87 217-307 14-103 (295)
76 PRK14648 UDP-N-acetylenolpyruv 89.1 0.9 1.9E-05 53.1 7.2 88 217-307 23-114 (354)
77 TIGR03194 4hydrxCoA_A 4-hydrox 88.3 2.5 5.4E-05 54.9 11.2 59 769-827 442-511 (746)
78 PRK11282 glcE glycolate oxidas 88.2 1.1 2.3E-05 52.8 7.1 100 232-350 4-103 (352)
79 PLN02441 cytokinin dehydrogena 87.4 1.3 2.8E-05 54.7 7.4 84 223-307 65-155 (525)
80 PF00111 Fer2: 2Fe-2S iron-sul 84.8 0.81 1.8E-05 41.3 3.0 31 9-48 19-49 (78)
81 PRK07569 bidirectional hydroge 82.1 2.1 4.5E-05 47.6 5.4 63 33-111 41-107 (234)
82 TIGR02416 CO_dehy_Mo_lg carbon 80.4 3 6.6E-05 54.4 6.9 70 772-843 476-556 (770)
83 TIGR02965 xanthine_xdhB xanthi 77.8 3.2 6.9E-05 54.1 5.9 72 770-843 446-528 (758)
84 TIGR03313 Se_sel_red_Mo probab 77.6 3.9 8.6E-05 54.4 6.7 135 2-168 11-146 (951)
85 PRK09800 putative hypoxanthine 77.4 5.1 0.00011 53.3 7.6 136 2-169 15-151 (956)
86 PRK00054 dihydroorotate dehydr 75.7 1.7 3.6E-05 48.7 2.2 39 8-46 191-229 (250)
87 KOG3049 Succinate dehydrogenas 70.7 2.4 5.2E-05 45.1 1.7 48 9-70 79-126 (288)
88 cd06192 DHOD_e_trans_like FAD/ 68.5 4.1 8.9E-05 45.2 3.2 19 28-46 210-228 (243)
89 TIGR02969 mam_aldehyde_ox alde 68.3 8 0.00017 53.4 6.4 73 769-843 1015-1098(1330)
90 PLN02906 xanthine dehydrogenas 67.6 9.9 0.00022 52.5 7.1 73 769-843 1010-1093(1319)
91 TIGR03311 Se_dep_Molyb_1 selen 67.2 8.2 0.00018 50.9 6.0 136 2-169 11-146 (848)
92 cd06219 DHOD_e_trans_like1 FAD 66.1 4.7 0.0001 45.0 3.1 40 7-46 189-228 (248)
93 TIGR03196 pucD xanthine dehydr 65.3 11 0.00024 49.3 6.5 69 773-843 467-548 (768)
94 PRK10713 2Fe-2S ferredoxin Yfa 60.4 6.7 0.00014 36.3 2.4 18 30-47 33-50 (84)
95 TIGR02911 sulfite_red_B sulfit 57.8 6 0.00013 44.6 2.0 38 8-45 200-240 (261)
96 cd06220 DHOD_e_trans_like2 FAD 56.8 7.8 0.00017 42.8 2.7 39 8-46 177-215 (233)
97 PRK05802 hypothetical protein; 52.9 9.5 0.00021 44.5 2.6 39 8-46 264-304 (320)
98 PF02738 Ald_Xan_dh_C2: Molybd 51.0 41 0.00089 42.2 8.0 57 771-827 319-386 (547)
99 PRK08221 anaerobic sulfite red 49.7 9.2 0.0002 43.2 1.8 37 9-45 203-242 (263)
100 PRK07860 NADH dehydrogenase su 49.7 12 0.00026 49.2 3.1 70 30-112 39-111 (797)
101 TIGR02008 fdx_plant ferredoxin 48.0 15 0.00032 34.9 2.7 18 30-47 36-53 (97)
102 PF10418 DHODB_Fe-S_bind: Iron 45.9 12 0.00026 29.7 1.4 18 30-47 2-19 (40)
103 PLN00192 aldehyde oxidase 45.8 39 0.00085 47.0 7.1 73 769-843 1028-1119(1344)
104 PF10437 Lip_prot_lig_C: Bacte 44.6 1E+02 0.0022 28.4 7.6 43 453-498 26-68 (86)
105 TIGR01973 NuoG NADH-quinone ox 42.5 22 0.00047 45.3 3.8 60 36-111 39-103 (603)
106 cd06218 DHOD_e_trans FAD/NAD b 42.2 20 0.00043 40.0 3.0 40 8-47 190-229 (246)
107 PRK13904 murB UDP-N-acetylenol 40.9 50 0.0011 37.2 5.8 73 218-307 13-86 (257)
108 PF02594 DUF167: Uncharacteris 40.8 68 0.0015 29.3 5.6 54 1039-1100 16-69 (77)
109 CHL00134 petF ferredoxin; Vali 40.5 24 0.00053 33.6 2.9 17 30-46 38-54 (99)
110 COG0633 Fdx Ferredoxin [Energy 37.7 18 0.00039 34.8 1.5 22 27-48 31-54 (102)
111 PRK08166 NADH dehydrogenase su 35.5 18 0.00038 48.0 1.4 74 31-111 31-110 (847)
112 PRK10684 HCP oxidoreductase, N 33.7 31 0.00067 40.3 2.9 18 30-47 279-296 (332)
113 PTZ00305 NADH:ubiquinone oxido 33.4 37 0.0008 38.8 3.3 60 36-111 110-173 (297)
114 KOG2282 NADH-ubiquinone oxidor 31.4 32 0.00069 41.6 2.4 63 36-110 73-135 (708)
115 PRK09130 NADH dehydrogenase su 30.2 43 0.00094 43.3 3.6 60 36-110 42-105 (687)
116 TIGR02160 PA_CoA_Oxy5 phenylac 30.0 38 0.00083 39.8 2.9 18 30-47 296-313 (352)
117 KOG4730 D-arabinono-1, 4-lacto 29.4 94 0.002 37.5 5.7 79 226-307 53-131 (518)
118 PLN03136 Ferredoxin; Provision 29.4 45 0.00097 34.4 2.8 18 30-47 87-104 (148)
119 PRK08345 cytochrome-c3 hydroge 29.2 33 0.00071 39.3 2.1 39 8-46 222-263 (289)
120 PRK06222 ferredoxin-NADP(+) re 29.0 47 0.001 37.9 3.3 39 8-46 191-229 (281)
121 PRK09129 NADH dehydrogenase su 25.9 33 0.00072 45.0 1.6 64 36-117 42-111 (776)
122 PF02594 DUF167: Uncharacteris 25.1 1.7E+02 0.0037 26.7 5.5 42 774-815 18-64 (77)
123 PRK12775 putative trifunctiona 24.5 52 0.0011 44.5 3.0 39 8-46 191-229 (1006)
124 PRK05713 hypothetical protein; 23.6 37 0.0008 39.3 1.2 16 31-46 31-46 (312)
125 PRK12778 putative bifunctional 22.0 68 0.0015 42.0 3.2 39 8-46 191-229 (752)
126 PTZ00038 ferredoxin; Provision 21.6 75 0.0016 34.2 2.9 18 30-47 128-145 (191)
No 1
>PLN00192 aldehyde oxidase
Probab=100.00 E-value=3.5e-225 Score=2174.49 Aligned_cols=1139 Identities=72% Similarity=1.137 Sum_probs=983.1
Q ss_pred ccccccHHHHHHHHhhcccccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEecCC
Q 001024 3 KSLRSQALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGL 82 (1185)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEg~ 82 (1185)
.+++-+||++||.-+. ++|||+||++|+||||||+|+++|+.++++++++|||||+|++++||++|+|||||
T Consensus 20 ~~p~~~Ll~~LR~~~~--------ltgtK~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEgl 91 (1344)
T PLN00192 20 VDPSTTLLEFLRTQTP--------FKSVKLGCGEGGCGACVVLLSKYDPVLDQVEDFTVSSCLTLLCSVNGCSITTSEGL 91 (1344)
T ss_pred CCCCCcHHHHHHHhhC--------CCCcCCCCCCCcCCCcEEEEeeccccccCcCCcEEehHHHHHHHhCCCEEEeecCc
Confidence 5677889999998888 88999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHhccCCCCCCCCchHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHhcCccccCCCChhHHHH
Q 001024 83 GNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADA 162 (1185)
Q Consensus 83 ~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~~a 162 (1185)
++.++.|||||++|+++||+|||||||||||+||+||+++....+|.|..+...+|++||+++|+|||||||||+||++|
T Consensus 92 ~~~~~~lhpvq~a~~~~~~~QCGfCtpG~vms~~~ll~~~~~~~~~~p~~~~~~~~~~~i~~~l~gnlCRCtgY~~i~~a 171 (1344)
T PLN00192 92 GNSKDGFHPIHKRFAGFHASQCGFCTPGMCISLFSALVNADKTDRPEPPSGFSKLTVVEAEKAVSGNLCRCTGYRPIVDA 171 (1344)
T ss_pred CCCCCCCCHHHHHHHHcCCCccCCCChHHHHHHHHHHHhcccccCCCcccccCCCCHHHHHHHhcCCceeCCCCHHHHHH
Confidence 96457899999999999999999999999999999996521000123211111247999999999999999999999999
Q ss_pred HHHhhhcccccccCCcccccCCCCcccccCCCCCCCCCCCccCCCcchhcc--cCccccccCCcEEEecCCHHHHHHHHH
Q 001024 163 CKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKE--NSSAMLLDVKGSWHSPISVQELRNVLE 240 (1185)
Q Consensus 163 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~--~~~~~~~~~~~~~~~P~sl~ea~~ll~ 240 (1185)
+++++.+.++++++.++|++++.+.....++|++|++++++|+| |+|+.. ....+.+.++++|++|+||+||+++|+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~P~sl~ea~~ll~ 250 (1344)
T PLN00192 172 CKSFAADVDIEDLGLNSFWKKGESEEAKLSKLPPYNHSDHICTF-PEFLKKEIKSSLLLDSSRYRWYTPVSVEELQSLLE 250 (1344)
T ss_pred HHHHHhhccchhcccccccccCCcchhhhhhcccCCCccccccC-hhhhhcccCccceecCCCceEECcCCHHHHHHHHH
Confidence 99999887777776455655332223344689999999998889 555532 122234445899999999999999999
Q ss_pred hhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEcCCeEEecccccHHHHHHHHHHhhhhhhhhhHhhH
Q 001024 241 SVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVF 320 (1185)
Q Consensus 241 ~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~~~~~~~~~~~~~~~~~ 320 (1185)
++.. ..+++++|||||||++++....|+++|||++|+||+.|+.++++|+|||+|||+++++++... ..+. .++
T Consensus 251 ~~~~-~~~~a~lvAGgTdl~~~k~~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~~~l~~~--~~~~---~~~ 324 (1344)
T PLN00192 251 SNNF-DGVSVKLVVGNTGTGYYKDEELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAIEALREE--SKSE---YVF 324 (1344)
T ss_pred hCCC-CCCCeEEEEeCCcceeeeccCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHHHHHHhh--cccc---chH
Confidence 6410 024899999999998877656789999999999999999999999999999999999886542 1110 158
Q ss_pred HHHHHHHHhhhchhhhcccccCCcccccccCCCCCchHHHHHhcCcEEEEEeCCeeEEEechhhccCCCCCCCceEEEEE
Q 001024 321 KKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLERPPLDSRSILLSVE 400 (1185)
Q Consensus 321 p~L~~~~~~ias~qIRN~aTiGGNI~~a~p~~~~sD~~~~LlAldA~v~l~s~~g~R~vpl~dF~~~~~l~~~EiI~~I~ 400 (1185)
|.|.+++++|||+||||+|||||||++++|..++||++|+|+||||+|+|.+.+|+|+||++|||.++.++++|||++|+
T Consensus 325 p~L~~~~~~vAs~qIRN~aTlGGNI~~Asp~~p~sD~~p~LlAl~A~v~l~s~~g~R~vpl~dFf~~~~l~~~Eil~~I~ 404 (1344)
T PLN00192 325 KKIADHMEKIASRFVRNTGSIGGNLVMAQRKQFPSDIATILLAAGSTVNIQNASKREKLTLEEFLERPPLDSKSLLLSVE 404 (1344)
T ss_pred HHHHHHHHHhcChhhccceechhhhcccCCCCCchhHHHHHHHhCcEEEEEeCCceEEEeHHHHhccCccCCcceEEEEE
Confidence 99999999999999999999999999999765579999999999999999999999999999999998999999999999
Q ss_pred ecCCCccCCccccCCcceeeeeEeccCCCCCCcccceeeeEEEEEcCCcCCCCceeeeeEEEEcccCC-CCcccHHHHHH
Q 001024 401 IPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGT-KHAIRARRVEE 479 (1185)
Q Consensus 401 iP~~~~~~~~~~~~~~~~~~~~~k~~~Rr~~~d~a~v~~A~~~~~~~~~~~~~~~i~~~ria~Ggv~~-~~p~ra~~~E~ 479 (1185)
||.+... .+.+.+++|.+||+++||+++|||+||+|+.++++...+.++++|+++||+||||++ + |+|+.++|+
T Consensus 405 iP~~~~~----~~~~~~~~f~~yk~~~Rr~~~diA~V~aA~~v~~~~~~~~~~~~i~~aria~Ggvap~~-P~ra~~~E~ 479 (1344)
T PLN00192 405 IPSWTSS----SGSDTKLLFETYRAAPRPLGNALPYLNAAFLAEVSQDASSGGIVVNDCRLAFGAYGTKH-AIRARKVEE 479 (1344)
T ss_pred ccCCccc----cccCcccceeeeeecccccccchhhheeeEEEEEEecccCCCCeEeEEEEEEecCCCCc-eecHHHHHH
Confidence 9965420 001125678899999997689999999999999851100013489999999999999 6 999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHcccCCcCCCCCcHHHHHHHHHHHHHHHHHHHHhhhc-CCCccccCCCCCCCcccccccccc
Q 001024 480 FLTGKVLNFGVLYEAIKLLRDSVVPEDGTSIPAYRSSLAVGFLYEFFGSLTEMKN-GISRDWLCGYSNNVSLKDSHVQQN 558 (1185)
Q Consensus 480 ~L~Gk~~~~~~l~~a~~~l~~e~~p~~~~~sa~YR~~la~~l~~r~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 558 (1185)
+|.||+|+++++++|.+++.+++.|.++.+|++||+.|+.+|++||+.++++.+. ...+.+.-+ +.....+ .
T Consensus 480 ~L~Gk~~~~~~l~~A~~~l~~~~~p~~~~~s~eYRr~la~~l~~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~- 552 (1344)
T PLN00192 480 FLTGKVLSDSVLYEAVRLLKGIVVPEDGTSHPEYRSSLAVGFLFDFLSPLIESNAKSSNGWLDGG----SNTKQNP--D- 552 (1344)
T ss_pred HhcCCCCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcccccccccccc----ccccccc--c-
Confidence 9999999999999999999999999988889999999999999999999998762 112222100 0000000 0
Q ss_pred ccccccccccccCCccccccccCCCCCCCCCcccccchhhhccccccccccCCCCCCcEEEEEEecCCCCeEEeeccCcc
Q 001024 559 HKQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKS 638 (1185)
Q Consensus 559 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~iG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~ 638 (1185)
.+ ....+++|++++.|.|+..+++++|||+++|+|++.|+||+++|++|++.+|||||++|||||++||+|++||+++
T Consensus 553 ~~--~~~~~~~~~~~~~q~~~~~~~~~~vG~~~~r~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~ 630 (1344)
T PLN00192 553 QH--DDVKKPTLLLSSKQQVEENNEYHPVGEPIKKVGAALQASGEAVYVDDIPSPKNCLYGAFIYSTKPLARVKGIKFKS 630 (1344)
T ss_pred cc--ccccccCCCCCcceeeecccccCcCCCCCcChhhHhhcccceecccccCCCCCCEEEEEEecCCCceEEEEEEhHH
Confidence 01 1346789999999999988999999999999999999999999999997558999999999999999999999999
Q ss_pred CCCCCCeEEEEEcCCCCCCCCCCCCccccCCcccccCCceeecCCeEEEEEECCHHHHHHhcccceEEEecCCCCCccCC
Q 001024 639 ESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILS 718 (1185)
Q Consensus 639 A~~~pGVv~Vvt~~Dip~~g~n~~~~~~~~~~~~~a~~~V~y~GqpVa~VVAes~~~A~~Aa~~V~Vey~~e~l~p~v~~ 718 (1185)
|++||||++|+|++|+|..+.|++......++|+|++++|+|+|||||+|||+|+++|++|+++|+|+|++++|.|+++|
T Consensus 631 A~~~pGV~aV~t~~Dip~~~~~~g~~~~~~~~~~la~~~Vr~~Gq~Va~VvA~t~~~A~~Aa~~V~VeYe~~~l~p~v~~ 710 (1344)
T PLN00192 631 NLVPQGVLAVITFKDIPKGGQNIGSKTIFGPEPLFADEVTRCAGQRIALVVADTQKHADMAANLAVVEYDTENLEPPILT 710 (1344)
T ss_pred hhcCCCcEEEEchHHcCcccccCCCCCCCCCceeccCCEEEEcCCeEEEEEECCHHHHHHHhccCEEEEecCCCCCcccC
Confidence 99999999999999998433333322123589999999999999999999999999999999999999942223378999
Q ss_pred HHHHhhcCCCcccCCccccCCCCChhcccccCCeeEEEEEEEeccccCCCcCCCceEEEECCCCcEEEEeCCCChHHHHH
Q 001024 719 VEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHA 798 (1185)
Q Consensus 719 ~e~Al~~~~~~~~~~~~~~~~~Gdv~~af~~a~~~vve~~~~~~~q~H~~mEp~~avA~~~~dg~l~V~~sTQ~p~~~r~ 798 (1185)
+++|+++++++..+........||++++|++|++++||++|++++|+|+||||++|+|+|++||.|+||+|||+|+.+|.
T Consensus 711 i~~Al~~~s~~~~~~~~~~~~~GD~~~af~~a~~vv~e~~~~~~~q~H~~mEp~~~vA~~~~dg~l~V~~sTQ~p~~~r~ 790 (1344)
T PLN00192 711 VEDAVKRSSLFEVPPFLYPKPVGDISKGMAEADHKILSAEIKLGSQYYFYMETQTALALPDEDNCIVVYSSTQCPEYVHS 790 (1344)
T ss_pred HHHHhcCCCCcccChhhcccccCCHHHHhccCCeEEEEEEEEECCEeeeeccCceEEEEEcCCCCEEEEECCCCHHHHHH
Confidence 99999998875422212234679999999999996459999999999999999999999998888999999999999999
Q ss_pred HHHHHhCCCCccEEEEEcccCCCCCCCCccccHHHHHHHHHHHhCCCCEEEEeChhhhhhhcCCCCceEEEEEEEeCCCC
Q 001024 799 TIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNG 878 (1185)
Q Consensus 799 ~vA~~Lglp~~kV~V~~~~vGGgFGgK~~~~~~~~~~aAlaA~~~gRPVrl~~sReed~~~~~~R~~~~~~~k~g~~~dG 878 (1185)
.||++||||++||+|+++++|||||+|..+...++++||++|+++||||||+|||+|||.++++|||+..+||+|+++||
T Consensus 791 ~vA~~Lgip~~~VrV~~~~vGGgFGgK~~~~~~~~~~aAlaA~~~gRPVr~~~sR~Edm~~~~~R~~~~~~~k~g~~~dG 870 (1344)
T PLN00192 791 VIARCLGIPEHNVRVITRRVGGGFGGKAVKSMPVATACALAAFKLQRPVRMYLNRKTDMIMAGGRHPMKITYSVGFKSDG 870 (1344)
T ss_pred HHHHHhCCChHHEEEEecccccCCCccccccchHHHHHHHHHHHhCCCEEEEecHHHHhhhcCCcCceEEEEEEEECCCC
Confidence 99999999999999999999999999987677888999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEEEeeCCCCCCCCcchhhhccccCCCcccCcEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcC
Q 001024 879 KITALQLNILIDAGLSPDVSPIMPSNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLS 958 (1185)
Q Consensus 879 ~i~a~~~~~~~d~Ga~~~~s~~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lG 958 (1185)
+|++++++++.|+|+|.+++.++...+.+..++|+|||++++++.|+||++|+|||||||.+|++|++|++||++|++||
T Consensus 871 ~I~a~~~~~~~d~Ga~~~~~~~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~pq~~fa~E~~mD~lA~~lg 950 (1344)
T PLN00192 871 KITALHLDILINAGISPDISPIMPRNIIGALKKYDWGALSFDIKVCKTNLSSRSAMRAPGEVQGSYIAEAIIEHVASTLS 950 (1344)
T ss_pred CEEEEEEEEEEecccCCCcchHHHHHHhhcCCCcCCCceEEEEEEEECCCCCCCcccCCCHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999998876544545556679999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHhhcCCCCCcccccccCCCccccCCHHHHHHHHHHhCCchhHHHHHHHHHhcCCcceeeeeeeceeecccccc
Q 001024 959 MEVDFVRNINLHTHKSLNLFYESSAGEYAEYTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVTLRS 1038 (1185)
Q Consensus 959 ~DP~e~R~~Nl~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~~~rGia~~~~~~~~~~~~ 1038 (1185)
|||+|||++||++++....+|..+.|...+..+++||+++++.++|++|++++++||+.|+|+|||+|+++++|+.++.+
T Consensus 951 ~DP~e~R~~Nl~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~~krGig~~~~~~~~~~~~ 1030 (1344)
T PLN00192 951 MDVDSVRKINLHTYESLKLFYGDSAGEPSEYTLPSIWDKLASSSEFKQRTEMVKEFNRSNKWKKRGISRVPIVHEVMLRP 1030 (1344)
T ss_pred cCHHHHHHhcCCCccccccCCCCcccccCCCcHHHHHHHHHHhcChHHHHHHHHHHhhcCCceEEEEEEEEEEEeccccC
Confidence 99999999999976544334555444333448999999999999999998888899999999999999999999987778
Q ss_pred cceEEEEeeCCcEEEEECCcCCCCcchhHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCcccccCccCccchhhHHHHH
Q 001024 1039 TPGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASCQ 1118 (1185)
Q Consensus 1039 ~~a~V~v~~DGsV~V~~g~~e~GqG~~T~~aQIaA~~Lgi~~~~~~~~p~e~V~v~~~dT~~~p~~~~t~gS~~t~~~g~ 1118 (1185)
..+.|+|++||+|+|.+|++|||||++|+++||+|++||++++++.+||+|+|+|.++||+.+||+++|+|||+|+++|+
T Consensus 1031 ~~a~v~i~~DGsv~v~~G~~e~GQG~~T~~aQiaA~~LGi~~~~~~~ip~e~I~v~~~dT~~~p~~~~t~gSr~t~~~G~ 1110 (1344)
T PLN00192 1031 TPGKVSILSDGSIAVEVGGIEIGQGLWTKVKQMAAFGLGMIKCDGGEDLLDKIRVIQSDTLSMIQGGFTAGSTTSESSCE 1110 (1344)
T ss_pred CceEEEEeCCceEEEEECCCCCCCCHHHHHHHHHHHHhCCccccccCCChhhEEEEecCCCCCCCCCCCchhhhHHHHHH
Confidence 89999999999999999999999999999999999999976666667799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhCCCCeEEEEEecCC
Q 001024 1119 VVRDCCNILVERLTLLRERLQGQMGNVEWETLIQQVHICSSEALSTEFILFN 1170 (1185)
Q Consensus 1119 Av~~Ac~~L~~rL~~~aa~~~~~~~~~~~~~~v~~a~~~~v~l~a~~~~~~~ 1170 (1185)
||++||++|++||++++++++..++.++|.+++..+|..+++|++++||+++
T Consensus 1111 Av~~Ac~~l~~rl~~~a~~~~~~~~~~~~~~~~~~a~~~~~~L~a~~~~~~~ 1162 (1344)
T PLN00192 1111 AVRLCCVILVERLKPIKERLQEQMGSVTWDMLISQAYMQSVNLSASSYYTPD 1162 (1344)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCcCHHHHHHHhcCCCCCeEEEEEECCC
Confidence 9999999999999999998865556799999999998888999999999754
No 2
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.8e-224 Score=1996.69 Aligned_cols=1065 Identities=42% Similarity=0.677 Sum_probs=961.4
Q ss_pred ccHHHHHHHHhhcccccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEecCCCCCC
Q 001024 7 SQALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSK 86 (1185)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEg~~~~~ 86 (1185)
.+|+++||+-+. ++|||.||+||+||||||++++||+.+ ++++.+|||||+|+++++|++|||+||||++.
T Consensus 21 ~TL~~fLR~k~~--------ltgtKlgC~EGGCGaCtv~ls~~dp~~-~~~~~avNsCLt~l~s~~g~~VtT~EGlGn~~ 91 (1257)
T KOG0430|consen 21 LTLNTFLREKLG--------LTGTKLGCGEGGCGACTVVLSKYDPEL-KVRHWAVNSCLTLLNSVHGLEVTTSEGLGNRR 91 (1257)
T ss_pred hhHHHHHHHhcC--------CcceeeccCCCCccceEEEEeccCCCc-eeEEeehhhhhhhcccccceEEEeeecccccc
Confidence 345555555554 566999999999999999999999999 99999999999999999999999999999988
Q ss_pred CCCcHHHHHHHhccCCCCCCCCchHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHhcCccccCCCChhHHHHHHHh
Q 001024 87 TGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADACKSF 166 (1185)
Q Consensus 87 ~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~~a~~~~ 166 (1185)
.++||||++|++.||+||||||||||||||+||.|++ ..| |++||+++|+||||||||||||+||+|+|
T Consensus 92 ~g~HPiq~RlA~~hgsQCGFCtPG~vmsmYalL~n~~----~~~-------T~~eie~a~~GNLCRCTGYRPIldA~kSF 160 (1257)
T KOG0430|consen 92 DGYHPIQERLAKMHGSQCGFCTPGFVMSMYALLRNSK----NSP-------TMEEIENAFGGNLCRCTGYRPILDAMKSF 160 (1257)
T ss_pred cCcCcHHHHHhhccCCcccCCCccHHHHHHHHHHhCC----CCC-------CHHHHHHhhccceeeecCCchHHHHHhhh
Confidence 8999999999999999999999999999999996531 134 59999999999999999999999999999
Q ss_pred hhcccccccCCcccccCCCCcccccCCCCCCCCCCCccCCCcchhcccCccccccC-CcEEEecCCHHHHHHHHHhhcCC
Q 001024 167 AADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKENSSAMLLDV-KGSWHSPISVQELRNVLESVEGS 245 (1185)
Q Consensus 167 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~-~~~~~~P~sl~ea~~ll~~~~~~ 245 (1185)
|.+.++|+++.+..|+. ++.....++ ++|+|+++. +|||++....+. ..++. +.+|+.|.||+|++++++
T Consensus 161 a~d~~~~~~g~~~~~~~-~~~~~~~~~-~~~dp~~~~-i~~pe~~~~~~~-~~~~~~~~~W~~P~sl~eL~~~~~----- 231 (1257)
T KOG0430|consen 161 AVDSDICGPGCDGFSIA-EEKDIEDLS-PPYDPKKEL-IFPPELLKRKKT-TLLGNDGIRWYWPVSLEELFELKA----- 231 (1257)
T ss_pred ccCCCccccCccccccc-ccccccccc-CCCCCccCc-ccChHHhccccc-cccCCCCcEEeCcccHHHHHHHHh-----
Confidence 99999998875444543 444455566 899999987 677777654323 34443 899999999999999999
Q ss_pred CCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEcCCeEEecccccHHHHHHHHHHhhhhhhhhhHhhHHHHHH
Q 001024 246 NQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALMVFKKIAG 325 (1185)
Q Consensus 246 ~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~~~~~~~~~~~~~~~~~p~L~~ 325 (1185)
+.+.+++|+|||..+++++...++++||+++||||+.+..++++|+|||++||+++++.+....+ .+. .++|+.+.+
T Consensus 232 ~~~~~~Lv~GNT~~gv~~r~~~~~~~Id~~~v~el~~~~~~~~gi~lGa~~sls~~~~~l~~~~~-~~~--~~~~~~~~~ 308 (1257)
T KOG0430|consen 232 NKPDAKLVAGNTAHGVYRRSPDYQKFIDVSGVPELKALNVDDNGLELGAALSLSETMELLRKLVK-RPG--FEYFKALWE 308 (1257)
T ss_pred cCcceEEEeccccceEEeccCCCcceechhcCchhhhcccCCCceEEcccccHHHHHHHHHHHHh-CcH--HHHHHHHHH
Confidence 47899999999999997664569999999999999988888999999999999999999887654 332 278999999
Q ss_pred HHHhhhchhhhcccccCCccccccc-CCCCCchHHHHHhcCcEEEEEeCCe-eEEEechhhccCCCCCCCceEEEEEecC
Q 001024 326 HMEKIASRFIRNSASVGGNLVMAQR-KHFPSDVATVLLGAGAMVNIMTGQK-CEKLMLEEFLERPPLDSRSILLSVEIPC 403 (1185)
Q Consensus 326 ~~~~ias~qIRN~aTiGGNI~~a~p-~~~~sD~~~~LlAldA~v~l~s~~g-~R~vpl~dF~~~~~l~~~EiI~~I~iP~ 403 (1185)
|+++||++||||.|||||||+.+++ ..||||++++|+|+||+|++.+..+ ..++.+.+|.... |.++|||.+|.||.
T Consensus 309 hl~~~A~~~IRN~atigGnI~~~~~~~~f~SDl~~~l~a~~a~v~~~~~~~~~~~~~l~~y~~~~-l~~~~illsv~ip~ 387 (1257)
T KOG0430|consen 309 HLKWFANVQIRNVGTIGGNICTKAQSPEFPSDLFILLEALDAKVTILNNSGDLEKVFLEEYLGSS-LGAKEILLSVVLPA 387 (1257)
T ss_pred HHHHhcccceeccccccceeEeccCCCCCchhHHHHHHhhccEEEEeecCCccceeeHhhhhccc-cCcceEEEEEEccC
Confidence 9999999999999999999988887 5788999999999999999998766 7889999998655 99999999999998
Q ss_pred CCccCCccccCCcceeeeeEeccCCCCCCcccceeeeEEEEEcCCcCCCCceeeeeEEEEcccCCCCcccHHHHHHHHcC
Q 001024 404 WDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTG 483 (1185)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~k~~~Rr~~~d~a~v~~A~~~~~~~~~~~~~~~i~~~ria~Ggv~~~~p~ra~~~E~~L~G 483 (1185)
+.. +|.+||+++| +++|+|+||++|+... ++|+++||+|||++|. .+++.++|+.|.|
T Consensus 388 ~~~------------~f~~~k~a~R-~e~a~a~vNa~fl~e~--------~~V~~~~i~fGg~~p~-~i~a~~~~~~~~g 445 (1257)
T KOG0430|consen 388 SRK------------YFESYKQAPR-RENAIAYVNAAFLAEV--------GKVSSARICFGGIAPD-FIHAKKTEELLLG 445 (1257)
T ss_pred cHH------------HHHHHHhccc-ccchhhhhhHHhhhcc--------ceeeeeeEeecCcCcc-hhhhhhHHHHhhc
Confidence 752 6889999999 6899999999887765 2899999999999999 9999999999999
Q ss_pred CCCCHHHHHHHHHHHcccCCcCCCCCcHHHHHHHHHHHHHHHHHHHHhhhcCCCccccCCCCCCCccccccccccccccc
Q 001024 484 KVLNFGVLYEAIKLLRDSVVPEDGTSIPAYRSSLAVGFLYEFFGSLTEMKNGISRDWLCGYSNNVSLKDSHVQQNHKQFD 563 (1185)
Q Consensus 484 k~~~~~~l~~a~~~l~~e~~p~~~~~sa~YR~~la~~l~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (1185)
+.|+++++++|...|..++.|..|.++.+||+.||.+||+|||+.+.+..+.. ..+.+|.
T Consensus 446 k~~~~~ll~~a~~lL~~~l~~~~p~~~~~yR~~La~sfffKF~l~~~~~~~~~-~~~~~g~------------------- 505 (1257)
T KOG0430|consen 446 KPWEEELLEDAFGLLQSDLVPDEPGGMPEYRKKLALGFFFKFLLKVAHKVKNG-NKFITGG------------------- 505 (1257)
T ss_pred ccccHHHHHHHHHhhhhhccCCCCCCcHHHHHHHHHHHHHHHHHHHhhhcccc-CCccCCC-------------------
Confidence 99999999999999999999988889999999999999999999999887421 1222221
Q ss_pred cccccccCCccccccccCCCCCCCCCcccccchhhhccccccccccCCCCCCcEEEEEEecCCCCeEEeeccCccCCCCC
Q 001024 564 ESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPD 643 (1185)
Q Consensus 564 ~~~~~~~~~~~~q~~~~~~~~~~iG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~p 643 (1185)
....+|+.++.|.+++..+.++||+|++++.+..|+||||.|+|||+.+++.||++||.|+++||+|+|||+++|+++|
T Consensus 506 -~~~~~~~ls~~Q~~~~~q~~~pVG~pi~~~~a~~qaSGEAvY~dDip~~~n~lh~aFV~St~p~A~I~sID~seAl~~~ 584 (1257)
T KOG0430|consen 506 -SLLARPLLSGGQQFETTQEHYPVGRPVEKLEALIQASGEATYVDDIPTPPNTLHAAFVLSTKPHAKILSIDASEALKLP 584 (1257)
T ss_pred -ccccccccccceeecCCCCCCcCcchhhhhhhhhhcccceEEecCCCCCCCeeEEEEEEcccCCcEEeeecchhhcCCC
Confidence 2234566666777777777999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCCCC-CCCCCccccCCcccccCCceeecCCeEEEEEECCHHHHHHhcccceEEEecCCCCCccCCHHHH
Q 001024 644 VVTALLSYKDIPEGG-QNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEA 722 (1185)
Q Consensus 644 GVv~Vvt~~Dip~~g-~n~~~~~~~~~~~~~a~~~V~y~GqpVa~VVAes~~~A~~Aa~~V~Vey~~e~l~p~v~~~e~A 722 (1185)
||+++++++|+|..+ .|++....+.|+++||+++|+|+||||++|||+|+++|++|+++|+|+| ++++|++++++||
T Consensus 585 GVv~~~~akDiPg~n~~~i~~~~~~~de~lFA~~~v~~~GQ~ig~ivAdt~~~A~rAA~lVkv~Y--~~l~p~I~t~e~A 662 (1257)
T KOG0430|consen 585 GVVAFFSAKDIPGNNMKNIGNMFFPEDEELFATDVVTCVGQPIGVIVADTHELAKRAAKLVKVEY--EELPPPILPSEDA 662 (1257)
T ss_pred ceEEEEecccCCCCCccccccccCCCccceeecceeEEcCcEEEEEEeCCHHHHHHhhhceEEEe--ccCCCceecHHHH
Confidence 999999999999422 1233333457999999999999999999999999999999999999999 7787889999999
Q ss_pred hhcCCCcccCCccccCCCCChhccc--ccCCeeEEEEEEEeccccCCCcCCCceEEEECCCCcEEEEeCCCChHHHHHHH
Q 001024 723 VDRSSLFEVPSFLYPKPVGDISKGM--NEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATI 800 (1185)
Q Consensus 723 l~~~~~~~~~~~~~~~~~Gdv~~af--~~a~~~vve~~~~~~~q~H~~mEp~~avA~~~~dg~l~V~~sTQ~p~~~r~~v 800 (1185)
++..++++.++ .+..+++.+.+ .++|.+ +||+++++.|+|||||||+++|+|++| +|.||+|||||..+|..|
T Consensus 663 i~~~s~~~~~~---~~~~~~~~~~~~~~~~d~i-~~Ge~~mG~QeHFYmEtQttl~vP~e~-el~v~~STQ~~~~tQ~~V 737 (1257)
T KOG0430|consen 663 VKDKSLSETEP---RLRKGDVGKSFQLEECDKI-LEGELDMGGQEHFYMEPQTTLVVPFEG-ELQVYSSTQWPDFTQSVV 737 (1257)
T ss_pred HhhhcccCCCc---cccccCcccccccccccee-EEEEEEecceeEEEeccceeEEeecCC-eEEEEEcCcCcHHHHHHH
Confidence 99988776433 34556655555 567874 999999999999999999999999987 899999999999999999
Q ss_pred HHHhCCCCccEEEEEcccCCCCCCCCccccHHHHHHHHHHHhCCCCEEEEeChhhhhhhcCCCCceEEEEEEEeCCCCcE
Q 001024 801 ARCLGIPEHNVRVITRRVGGAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKI 880 (1185)
Q Consensus 801 A~~Lglp~~kV~V~~~~vGGgFGgK~~~~~~~~~~aAlaA~~~gRPVrl~~sReed~~~~~~R~~~~~~~k~g~~~dG~i 880 (1185)
|++||||.|||+|+++|+|||||||.++..+++++|||+|+|+|||||++++|++||.++|+|||++.+|++|+++||||
T Consensus 738 A~~Lgipa~~V~v~trRvGGGFGGK~trs~~VA~a~ALaA~Kl~RPvr~~l~r~~dM~itG~Rhp~~~~Ykvgf~~~GkI 817 (1257)
T KOG0430|consen 738 AHVLGLPANKVQVKTRRLGGGFGGKETRSNPVAAAAALAAYKLNRPVRFVLSRESDMIITGKRHPFHGKYKVGFKSDGKI 817 (1257)
T ss_pred HHHhCCCccceEEEEEeeccccccccccccHHHHHHHHHHHHhCCCEEEEecchhhhhhcCCccceEEeEEEEEccCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeeCCCCCCCCcchhhhccccCCCcccCcEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCC
Q 001024 881 TALQLNILIDAGLSPDVSPIMPSNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSME 960 (1185)
Q Consensus 881 ~a~~~~~~~d~Ga~~~~s~~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lG~D 960 (1185)
+|+++++|.|+|+..|.|+.+.+++++++++|+|||+++++++|+||.|++|||||||.||++++.|++|+|+|.++|+|
T Consensus 818 ~aL~~~~~~naG~s~d~S~~~~~~~~~~~n~Y~~~~~r~~G~~ckTN~pSnTa~Rg~G~pQG~~i~E~iie~VA~~~g~d 897 (1257)
T KOG0430|consen 818 LALDLEFYENAGWSKDESPSVLRAMFHSDNVYEIGDVRFDGYVCKTNLPSNTAFRGPGSPQGILITENIIERIAFELGKD 897 (1257)
T ss_pred EEEehhhhhccCCCcCcchHHHhhhhhhhheecccceeeeeeEEecCCCCcchhcCCCChhhHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999996668899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcccccccCCCccccCCHHHHHHHHHHhCCchhHHHHHHHHHhcCCcceeeeeeeceeecccccc-c
Q 001024 961 VDFVRNINLHTHKSLNLFYESSAGEYAEYTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVTLRS-T 1039 (1185)
Q Consensus 961 P~e~R~~Nl~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~~~rGia~~~~~~~~~~~~-~ 1039 (1185)
|.|+|++|+++.++.+.+ . |....+.+++||+++...++|++|++++++||+.|+||||||+++|++|++++.. .
T Consensus 898 ~eeVR~~N~y~eg~~~~~-~---~~~~~~~l~~~w~~~~~sS~y~~Rk~ev~~FN~~N~WrKRGi~~vp~~f~i~~~~~~ 973 (1257)
T KOG0430|consen 898 PEEVRKINFYVEGSLTYY-H---GELQHCTLPQLWPECLVSSKFEKRKSEIEEFNKENRWKKRGLAMVPMKFGISFTGQA 973 (1257)
T ss_pred HHHHhhhhhhhccccccc-C---CCcccCcHHHHHHHHHHhchHHHHHHHHHHhhhcChhhhcCceEeeeecceeccCCC
Confidence 999999999998887532 2 4555679999999999999999999999999999999999999999999998864 9
Q ss_pred ceEEEEeeCCcEEEEECCcCCCCcchhHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCcccccCccCccchhhHHHHHH
Q 001024 1040 PGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASCQV 1119 (1185)
Q Consensus 1040 ~a~V~v~~DGsV~V~~g~~e~GqG~~T~~aQIaA~~Lgi~~~~~~~~p~e~V~v~~~dT~~~p~~~~t~gS~~t~~~g~A 1119 (1185)
.|.|+|+.||||.|+|||+|||||+||||+||||+.||| |++.|+|.++||+.+||+++|+||.+++++|.|
T Consensus 974 ~a~V~Iy~DGSV~v~hgGiEmGQGL~TK~~Qvaa~~l~i--------p~~~v~v~~tsT~~v~na~~Ta~S~~Sd~~g~A 1045 (1257)
T KOG0430|consen 974 PALVHIYTDGTVVVTHGGIEMGQGLNTKVAQVAAYALGI--------PLSSVFVSETSTDKVPNASPTAASVSSDMYGAA 1045 (1257)
T ss_pred ceEEEEEcCCeEEEEECcEEcccchhHHHHHHHHHHhCC--------cccceEEeecccccccCCCccccccccccccHH
Confidence 999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhCCCCeEEEEEecCC
Q 001024 1120 VRDCCNILVERLTLLRERLQGQMGNVEWETLIQQVHICSSEALSTEFILFN 1170 (1185)
Q Consensus 1120 v~~Ac~~L~~rL~~~aa~~~~~~~~~~~~~~v~~a~~~~v~l~a~~~~~~~ 1170 (1185)
|++||++|.+||+|++.+. ...+|.|||++||.+.|+|+|+.||+.+
T Consensus 1046 V~~~C~~l~~RL~Pv~~k~----~~~tw~~~i~~AY~q~V~LsAs~~~~~~ 1092 (1257)
T KOG0430|consen 1046 VLDACETINARLEPVKSKH----NFNTWEELIQAAYGQSINLSASDWYKPE 1092 (1257)
T ss_pred HHHHHHHHHHhhhhhhhhc----CCccHHHHHHHHhhCccceeeeccccCC
Confidence 9999999999999999865 3489999999999999999999999875
No 3
>PLN02906 xanthine dehydrogenase
Probab=100.00 E-value=2e-218 Score=2111.85 Aligned_cols=1079 Identities=32% Similarity=0.509 Sum_probs=953.9
Q ss_pred ccHHHHHHHHhhcccccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEecCCCCCC
Q 001024 7 SQALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSK 86 (1185)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEg~~~~~ 86 (1185)
-+||++||. ++ ++|||+||++|+||||||+|+++|+.+|++.+++|||||+|+++++|++|+|||||++.+
T Consensus 2 ~~ll~~LR~-~~--------l~g~k~gC~~g~CGaCtv~~~~~~~~~~~~~~~~v~sC~~~~~~~~g~~i~Tvegl~~~~ 72 (1319)
T PLN02906 2 QTLLEYLRD-LG--------LTGTKLGCGEGGCGACTVMVSHYDRKTGKCVHYAVNACLAPLYSVEGMHVITVEGIGNRR 72 (1319)
T ss_pred CcHHHHHHh-CC--------CCCCCCCcCCCCCCCeEEEECCccccCCccCCeEehhhHHHHHHhCCCEEEecCCCCCCC
Confidence 368899997 77 788999999999999999999999988999999999999999999999999999999645
Q ss_pred CCCcHHHHHHHhccCCCCCCCCchHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHhcCccccCCCChhHHHHHHHh
Q 001024 87 TGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADACKSF 166 (1185)
Q Consensus 87 ~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~~a~~~~ 166 (1185)
+.|||||++|+++|++|||||||||||+||+||+++ .+.| |++||+++|+|||||||||+||++|++++
T Consensus 73 ~~~~~vq~a~~~~~~~QCG~CtpG~vm~~~~ll~~~----~~~~-------~~~~i~~~l~gnlCRCtgy~~i~~a~~~~ 141 (1319)
T PLN02906 73 DGLHPVQEALASMHGSQCGFCTPGFIMSMYALLRSS----KTPP-------TEEQIEECLAGNLCRCTGYRPILDAFRVF 141 (1319)
T ss_pred CCCCHHHHHHHHcCCCcCCCCchHHHHHHHHHHHhC----CCCC-------CHHHHHHHhcCCcccCCCCHHHHHHHHHH
Confidence 789999999999999999999999999999999542 1344 59999999999999999999999999999
Q ss_pred hhccc----------ccccCCcccccCC-C-C-c--------------cc----ccCCCCCCCCCCCccCCCcchhcccC
Q 001024 167 AADVD----------IEDLGINSFWAKG-E-S-K--------------EV----KISRLPPYKHNGELCRFPLFLKKENS 215 (1185)
Q Consensus 167 ~~~~~----------~~~~~~~~c~~~~-~-~-~--------------~~----~~~~~~~~~~~~~~~~~p~~l~~~~~ 215 (1185)
+.+.+ +++++ .||+.. . + + .+ ..+++++|+++|++ +||++|.....
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~f~~~l~~~~~ 218 (1319)
T PLN02906 142 AKTDDALYTGVSSLSLQDGE--PICPSTGKPCSCGSKTTSAAGTCKSDRFQPISYSEIDGSWYTEKEL-IFPPELLLRKL 218 (1319)
T ss_pred HhcccccCCcccchhhhhcc--ccccccCcccccccccccccccccccccccccccccccccCccccc-cCCHHHhhCCC
Confidence 97742 12222 233311 1 0 0 00 12467889999876 89999864433
Q ss_pred ccccccC--CcEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCccccc-ccc-cCCCCeeEeCCCCCCCCceEEcCCeEE
Q 001024 216 SAMLLDV--KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKE-VEHYDKYIDIRYIPELSVIRRDQTGIE 291 (1185)
Q Consensus 216 ~~~~~~~--~~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~-~k~-~~~~~~lIdl~~I~EL~~I~~~~~~l~ 291 (1185)
..+.+.+ .++|++|+||+||+++|++ ++++++|||||||++ ++. ...++++|||++|+||+.|+.++++|+
T Consensus 219 ~~~~~~~~~~~~~~~P~tl~ea~~ll~~-----~~~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~ 293 (1319)
T PLN02906 219 TPLKLLGNGGLTWYRPTSLQHLLELKAE-----YPDAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLE 293 (1319)
T ss_pred cceeecCCCCceEECcCCHHHHHHHHHh-----CCCCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEE
Confidence 4455643 7999999999999999994 578999999999988 544 367899999999999999999999999
Q ss_pred ecccccHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCcccccccCCCCCchHHHHHhcCcEEEEE
Q 001024 292 IGATVTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIM 371 (1185)
Q Consensus 292 IGA~vTl~~l~~~~~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p~~~~sD~~~~LlAldA~v~l~ 371 (1185)
|||+|||++|++++...+.+.++...+.+|.|.+++++|||+||||+|||||||++++|+ ||++|+|+||||+|+|.
T Consensus 294 IGA~vT~~el~~~l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~asP~---sD~~p~LlAl~A~v~l~ 370 (1319)
T PLN02906 294 IGAAVRLSELQNLFRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICTASPI---SDLNPLWMAAGATFVII 370 (1319)
T ss_pred EecCCcHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhccCCCc---hhHHHHHHHcCcEEEEE
Confidence 999999999999876655444555567899999999999999999999999999999998 99999999999999999
Q ss_pred eCCe-eEEEechhhccC---CCCCCCceEEEEEecCCCccCCccccCCcceeeeeEeccCCCCCCcccceeeeEEEEEcC
Q 001024 372 TGQK-CEKLMLEEFLER---PPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSP 447 (1185)
Q Consensus 372 s~~g-~R~vpl~dF~~~---~~l~~~EiI~~I~iP~~~~~~~~~~~~~~~~~~~~~k~~~Rr~~~d~a~v~~A~~~~~~~ 447 (1185)
+.+| +|+||++|||.+ +.|.++|||++|+||.+.. ..++.+||+++| +++|||+||+|+.++++.
T Consensus 371 s~~g~~R~vpl~dFf~g~~kt~L~~~Eil~~I~iP~~~~----------~~~~~~~K~~~R-~~~dia~V~~A~~v~l~~ 439 (1319)
T PLN02906 371 SCDGDIRSVPASDFFLGYRKVDLKPDEILLSVFLPWTRP----------FEYVKEFKQAHR-RDDDIAIVNAGMRVKLEE 439 (1319)
T ss_pred cCCCCeEEEEHHHhcCccccccCCCCceEEEEEccCCCC----------CccEEEEEEcCc-cccchhheeeEEEEEEec
Confidence 9886 899999999985 5899999999999997644 355678999999 689999999999999962
Q ss_pred CcCCCCceeeeeEEEEcccCCCCcccHHHHHHHHcCCCCCHHHHHHHHHHHcccCCcCCCC--CcHHHHHHHHHHHHHHH
Q 001024 448 CKTGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT--SIPAYRSSLAVGFLYEF 525 (1185)
Q Consensus 448 ~~~~~~~~i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~~~~~~l~~a~~~l~~e~~p~~~~--~sa~YR~~la~~l~~r~ 525 (1185)
.. ++++|+++||+||||+++ |+|+.++|++|.|++|+++++++|.+++.+++.|.++. +|++||++|+.+|++||
T Consensus 440 ~~--~~~~i~~aria~Ggva~~-p~ra~~~E~~L~G~~~~~~~i~~A~~~l~~~~~p~~d~~~~sa~YR~~la~~ll~r~ 516 (1319)
T PLN02906 440 KD--GEWIVSDASIAYGGVAPL-SVSARKTEEFLIGKPWNKETLQDALKVLQKDILIKEDAPGGMVEFRKSLALSFFFKF 516 (1319)
T ss_pred CC--CCceEeEEEEEEeccCCc-eecHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence 00 112799999999999999 99999999999999999999999999999999888763 79999999999999999
Q ss_pred HHHHHhhhcCCCccccCCCCCCCccccccccccccccccccccccCCccccccccCCCCCCCCCcccccchhhhcccccc
Q 001024 526 FGSLTEMKNGISRDWLCGYSNNVSLKDSHVQQNHKQFDESKVPTLLSSAEQVVQLSREYYPVGEPITKSGAALQASGEAI 605 (1185)
Q Consensus 526 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~iG~~~~r~d~~~kvtG~a~ 605 (1185)
+++++.++....+.+ ..+++.. .+ ....+++|+|.+.|.||.++++++|||+++|+|+..||||+++
T Consensus 517 ~~~~~~~~~~~~~~~----~~~~~~~-------~~--~~~~~~~~~~~~~q~~~~~~~~~~vGk~~~r~d~~~kvtG~a~ 583 (1319)
T PLN02906 517 FLWVSHQLEADGSTI----ETFPESH-------LS--AAQPFPRPSSVGMQDYETVKQGTAVGQPEVHLSAELQVTGEAE 583 (1319)
T ss_pred HHHHhhhcccccccc----ccCChhh-------cc--ccccccCCCCccceecccccccccCCCCccCcchhhhcceeEE
Confidence 999998762110000 0111111 11 2357889999999999988999999999999999999999999
Q ss_pred ccccCCCCCCcEEEEEEecCCCCeEEeeccCccCCCCCCeEEEEEcCCCCCCCCC-CCCccccCCcccccCCceeecCCe
Q 001024 606 YVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQN-IGSKTIFGSEPLFADELTRCAGQP 684 (1185)
Q Consensus 606 Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~pGVv~Vvt~~Dip~~g~n-~~~~~~~~~~~~~a~~~V~y~Gqp 684 (1185)
|++|++.+|||||++|||||++||+|++||+++|++||||++|+|++|+| +.| ++. ...++|+|++++|+|+|||
T Consensus 584 Y~~Di~~~~g~L~a~~vrSp~aharI~sID~s~A~~~pGV~~v~t~~Dip--~~~~~g~--~~~~~~~la~~~V~y~Gqp 659 (1319)
T PLN02906 584 YADDIPMPPNTLHAALVLSTKPHARILSIDDSEAKSSPGFAGIFLAKDVP--GDNMIGP--VVHDEELFATDVVTCVGQV 659 (1319)
T ss_pred eccCCcCCCCCEEEEEEecCcCceEEeecchHHHhCCCCeEEEEchhhCC--CCCCCCC--CCCCeeEecCcEEEEcCCe
Confidence 99999855899999999999999999999999999999999999999998 433 332 2358999999999999999
Q ss_pred EEEEEECCHHHHHHhcccceEEEecCCCCCccCCHHHHhhcCCCcccCCccccCCCCChhccccc--CCeeEEEEEEEec
Q 001024 685 VAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNE--ADHRILAAEIKLG 762 (1185)
Q Consensus 685 Va~VVAes~~~A~~Aa~~V~Vey~~e~l~p~v~~~e~Al~~~~~~~~~~~~~~~~~Gdv~~af~~--a~~~vve~~~~~~ 762 (1185)
||+|||+|+++|++|+++|+|+| |+| |+++|+++|++++++|+... .....||++++|++ ++++ ||++|+++
T Consensus 660 Va~VvA~t~~~A~~Aa~~V~Vey--e~l-p~v~~~~~Al~~~a~~~~~~--~~~~~Gdv~~af~~a~a~~v-ve~~~~~~ 733 (1319)
T PLN02906 660 IGVVVADTQENAKAAARKVKVEY--EEL-PAILSIEEAIEAGSFHPNTE--RRLEKGDVELCFASGQCDRI-IEGEVQMG 733 (1319)
T ss_pred EEEEEECCHHHHHHHhCCCEEEE--ecC-CccCCHHHHhcCCCcccCCC--ceeecCCHHHHhhccCCceE-EEEEEEEC
Confidence 99999999999999999999999 788 89999999999988764221 23578999999999 6985 99999999
Q ss_pred cccCCCcCCCceEEEECCC-CcEEEEeCCCChHHHHHHHHHHhCCCCccEEEEEcccCCCCCCCCccccHHHHHHHHHHH
Q 001024 763 SQYYFYMETQTALAVPDED-NCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPVATACALAAY 841 (1185)
Q Consensus 763 ~q~H~~mEp~~avA~~~~d-g~l~V~~sTQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFGgK~~~~~~~~~~aAlaA~ 841 (1185)
+|+|+||||++|+|+|++| |+|+||+|||+|+.+|..||++||||++||+|+++++|||||+|.+....++++||++|+
T Consensus 734 ~~~H~~mEp~~~~A~~~~~~g~l~v~~sTQ~p~~~r~~vA~~Lgip~~kVrV~~~~vGGgFGgK~~~~~~~~~~aAlaA~ 813 (1319)
T PLN02906 734 GQEHFYLEPNSSLVWTSDSGNEVHMISSTQAPQKHQKYVAHVLGLPMSKVVCKTKRIGGGFGGKETRSAFIAAAAAVPAY 813 (1319)
T ss_pred CccccccCCCeEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhCCChHHeEEEeCCcccCccccccccchHHHHHHHHHH
Confidence 9999999999999999977 689999999999999999999999999999999999999999999866667788999999
Q ss_pred hCCCCEEEEeChhhhhhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEeeCCCCCCCCc-chhhhccccCCCcccCcEEEE
Q 001024 842 KLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVSP-IMPSNMIGALKKYDWGALHFD 920 (1185)
Q Consensus 842 ~~gRPVrl~~sReed~~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~s~-~~~~~~~~~~~~Y~ipn~~~~ 920 (1185)
++||||||+|||+|+|+++++||++.++||+|+++||+|++++++++.|+|+|.+++. ++...+.+..++|+|||++++
T Consensus 814 ~~gRPVkl~~sReE~~~~~~~R~~~~~~~k~g~~~dG~I~a~~~~~~~d~Ga~~~~~~~v~~~~~~~~~~~Y~ipn~~~~ 893 (1319)
T PLN02906 814 LLNRPVKLTLDRDVDMMITGQRHAFLGKYKVGFTNEGKILALDLEIYNNGGNSLDLSGAVLERAMFHSDNVYEIPNVRIV 893 (1319)
T ss_pred HhCCCEEEEecHHHHhhhcCCccceEEEEEEEECCCCCEEEEEEEEEecCcccCCcchHHHHHHHHhcCCCccCcceEEE
Confidence 9999999999999999999999999999999999999999999999999999998775 455566677899999999999
Q ss_pred EEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCcccccccCCCccccC-CHHHHHHHHH
Q 001024 921 IKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLFYESSAGEYAEY-TLPLIWDKLA 999 (1185)
Q Consensus 921 ~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lG~DP~e~R~~Nl~~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~ 999 (1185)
++.|+||++|+|||||||.+|++|++|++||++|++|||||+|||++|++++++.+ +.|+.+++ .+++||++++
T Consensus 894 ~~~v~TN~~~~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~~Nl~~~g~~~-----~~g~~~~~~~~~~~l~~~~ 968 (1319)
T PLN02906 894 GNVCFTNFPSNTAFRGFGGPQGMLITENWIQRIAVELNKSPEEIREMNFQGEGSVT-----HYGQVLQHCTLPQLWDELK 968 (1319)
T ss_pred EEEEECCCCCCCcccCCCHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhCCCCCCCC-----cCCccccCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999876543 34544433 8999999999
Q ss_pred HhCCchhHHHHHHHHHhcCCcceeeeeeeceeeccccc-----ccceEEEEeeCCcEEEEECCcCCCCcchhHHHHHHHH
Q 001024 1000 VSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVTLR-----STPGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAF 1074 (1185)
Q Consensus 1000 ~~~~~~~r~~~~~~~n~~~~~~~rGia~~~~~~~~~~~-----~~~a~V~v~~DGsV~V~~g~~e~GqG~~T~~aQIaA~ 1074 (1185)
+.++|++|++.+++||+.|+|+|||+|+++..|+.++. +..+.|+|++||+|+|.+|++|||||++|+++||||+
T Consensus 969 ~~~~~~~r~~~~~~~~~~~~~~krGiG~a~~~~g~~~~~~~~~~~~a~V~i~~DGsV~V~~G~~e~GQG~~T~~aQiaAe 1048 (1319)
T PLN02906 969 VSCDFLKRREEVDEFNAKNRWKKRGVAMVPTKFGISFTTKFMNQAGALVHVYTDGTVLVTHGGVEMGQGLHTKVAQVAAS 1048 (1319)
T ss_pred HhCCHHHHHHHHHHHhhcCCCceEEEEEEecccccccccccCCccceEEEEcCCceEEEEECCccCCCChHHHHHHHHHH
Confidence 99999998888889999899999999999888887542 5789999999999999999999999999999999999
Q ss_pred HhcccccCCCCCCCCcEEEEcCCCcccccCccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 001024 1075 ALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASCQVVRDCCNILVERLTLLRERLQGQMGNVEWETLIQQV 1154 (1185)
Q Consensus 1075 ~Lgi~~~~~~~~p~e~V~v~~~dT~~~p~~~~t~gS~~t~~~g~Av~~Ac~~L~~rL~~~aa~~~~~~~~~~~~~~v~~a 1154 (1185)
+||| |+|+|+|.++||+.+||+++|+|||+|+++|+||++||++||+||+++++++ ..++|.+++..+
T Consensus 1049 ~LGi--------p~d~V~v~~~DT~~~p~~~gT~aSr~t~~~G~Av~~Aa~~l~~rl~~~a~~~----~~~~~~~l~~~~ 1116 (1319)
T PLN02906 1049 AFNI--------PLSSVFISETSTDKVPNASPTAASASSDMYGAAVLDACEQIKARMEPVASKL----NFSSFAELVTAC 1116 (1319)
T ss_pred HHCC--------CHHHEEEEccCCCCCCCCCCCccchhhHhHHHHHHHHHHHHHHHHHHHHHHc----CCCCHHHHHHHh
Confidence 9999 9999999999999999999999999999999999999999999999998765 358999999999
Q ss_pred HhCCCCeEEEEEecCC
Q 001024 1155 HICSSEALSTEFILFN 1170 (1185)
Q Consensus 1155 ~~~~v~l~a~~~~~~~ 1170 (1185)
|..+++|++++||+.+
T Consensus 1117 ~~~~~~l~a~~~~~~~ 1132 (1319)
T PLN02906 1117 YFQRIDLSAHGFYITP 1132 (1319)
T ss_pred hccCCCeEEEEEecCC
Confidence 9888899999999764
No 4
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=100.00 E-value=7.5e-217 Score=2094.53 Aligned_cols=1081 Identities=30% Similarity=0.483 Sum_probs=947.2
Q ss_pred CccccccHHHHHHHHhhcccccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEecC
Q 001024 2 EKSLRSQALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEG 81 (1185)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEg 81 (1185)
+.+++-+||++||.-+. ++|||+||++|+||||||+|+++|+.++++++++|||||+|+++++|++|+||||
T Consensus 16 ~~~~~~~ll~~LR~~~~--------l~gtk~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~v~TvEg 87 (1330)
T TIGR02969 16 NVDPETMLLPYLRKKLR--------LTGTKYGCGGGGCGACTVMISRYNPSTKSIRHHPVNACLTPICSLYGAAVTTVEG 87 (1330)
T ss_pred cCCCCCcHHHHHHhhcC--------CCCCCCCcCCCCCCCcEEEECCccccccccCCcEEehhHHHHHHhCCCEEEecCC
Confidence 35677888899888777 7889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHhccCCCCCCCCchHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHhcCccccCCCChhHHH
Q 001024 82 LGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIAD 161 (1185)
Q Consensus 82 ~~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~~ 161 (1185)
|++.++.|||||+||+++|++|||||||||||++++||++ ++.|+ ++||+++|+|||||||||++|++
T Consensus 88 l~~~~~~l~pvq~a~~~~~~~QCGfCtpG~vm~~~~ll~~-----~~~p~-------~~~i~~~l~gnlCRCtgY~~i~~ 155 (1330)
T TIGR02969 88 IGSTRTRLHPVQERIAKCHGTQCGFCTPGMVMSMYALLRN-----HPEPT-------LDQLTDALGGNLCRCTGYRPIID 155 (1330)
T ss_pred cCCCCCCCCHHHHHHHHcCCCcCCCCchHHHHHHHHHHHc-----CCCCC-------HHHHHHHhcCCcccCCCCHHHHH
Confidence 9964568999999999999999999999999999999953 56664 99999999999999999999999
Q ss_pred HHHHhhhccc--ccccCCcccccC---C--CC--------cccccCCCCCCCCCCCccCCCcchhccc---Ccc-ccccC
Q 001024 162 ACKSFAADVD--IEDLGINSFWAK---G--ES--------KEVKISRLPPYKHNGELCRFPLFLKKEN---SSA-MLLDV 222 (1185)
Q Consensus 162 a~~~~~~~~~--~~~~~~~~c~~~---~--~~--------~~~~~~~~~~~~~~~~~~~~p~~l~~~~---~~~-~~~~~ 222 (1185)
|+++++.+.. +++++.+||+.+ + ++ .....+++.++++.+++ +||++|.... ... +.+.+
T Consensus 156 a~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fp~~l~~~~~~~~~~~~~~~~ 234 (1330)
T TIGR02969 156 ACKTFCKTSGCCQSKENGVCCLDQGINGLPEFEEGDETSPELFSEEEFLPLDPTQEL-IFPPELMRMAEKQPQRTRVFYS 234 (1330)
T ss_pred HHHHHhhccCCchhccccCccccccccccccccccccccccccchhcccCCCccccc-cCChhHhhcccccccceeeecC
Confidence 9999997753 334443455411 1 00 01122356667877754 8999987431 112 45555
Q ss_pred -CcEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCccccc-ccc-cCCCCeeEeCCCCCCCCceEEcCCeEEecccccHH
Q 001024 223 -KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKE-VEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTIS 299 (1185)
Q Consensus 223 -~~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~-~k~-~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~ 299 (1185)
..+|++|+||+||+++|++ ++++++|||||||++ ++. ...++.+|||++|+||+.|+.++++|+|||+|||+
T Consensus 235 ~~~~~~~P~tl~ea~~ll~~-----~~~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~ 309 (1330)
T TIGR02969 235 ERMMWISPVTLKELLEAKFK-----YPQAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLA 309 (1330)
T ss_pred CCceEECCCCHHHHHHHHHh-----CCCCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHH
Confidence 5799999999999999994 578999999999998 555 35678999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCcccccccCCCCCchHHHHHhcCcEEEEEeCCeeEEE
Q 001024 300 KAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKL 379 (1185)
Q Consensus 300 ~l~~~~~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p~~~~sD~~~~LlAldA~v~l~s~~g~R~v 379 (1185)
+|++.+...+.+.++...+.+|.|.+++++|||+||||+||||||||+++|+ ||++|+|+||||+|+|.+.+|+|+|
T Consensus 310 el~~~l~~~i~~~p~~~~~~~p~L~~a~~~ias~qIRN~gTlGGNi~~asP~---sD~~p~LlAl~A~v~l~s~~g~R~v 386 (1330)
T TIGR02969 310 QVKDILADVVQKLPEETTQTYRALLKHLGTLAGSQIRNMASLGGHIISRHLD---SDLNPLLAVGNCTLNLLSKEGKRQI 386 (1330)
T ss_pred HHHHHHHHhhhcCchhhhHHHHHHHHHHHHhCChhhcccccchhhcccCCCc---hhHHHHHHHcCcEEEEecCCceEEE
Confidence 9999876655445555567899999999999999999999999999999999 9999999999999999999999999
Q ss_pred echhhcc----CCCCCCCceEEEEEecCCCccCCccccCCcceeeeeEeccCCCCCCcccceeeeEEEEEcCCcCCCCce
Q 001024 380 MLEEFLE----RPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIR 455 (1185)
Q Consensus 380 pl~dF~~----~~~l~~~EiI~~I~iP~~~~~~~~~~~~~~~~~~~~~k~~~Rr~~~d~a~v~~A~~~~~~~~~~~~~~~ 455 (1185)
|++|||. ++.|+++|||++|.||.+.. ...+.+||+++| +++|||+||+|+.+++++ ++++
T Consensus 387 pl~dff~~~~~~t~L~~~Eil~~I~iP~~~~----------~~~~~~~K~~~R-~~~dia~V~~A~~v~l~~----~~~~ 451 (1330)
T TIGR02969 387 PLSEQFLSKCPDADLKPQEILVSVNIPYSRK----------WEFVSAFRQAQR-QQNALAIVNSGMRVFFGE----GDGI 451 (1330)
T ss_pred ehHHhhhcccccccCCCCceEEEEEecCCCC----------ccceeEEEEcCC-ccccHHHhhheEEEEEEc----CCCE
Confidence 9999883 45899999999999997643 345678999988 689999999999999941 1469
Q ss_pred eeeeEEEEcccCCCCcccHHHHHHHHcCCCCCHHHHHHHHHHHcccCCc-CCCC-CcHHHHHHHHHHHHHHHHHHHHhhh
Q 001024 456 VNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVP-EDGT-SIPAYRSSLAVGFLYEFFGSLTEMK 533 (1185)
Q Consensus 456 i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~~~~~~l~~a~~~l~~e~~p-~~~~-~sa~YR~~la~~l~~r~l~~~~~~~ 533 (1185)
|+++||+||||+++ |+|+.++|++|.||+|+++++++|.+++.+++.| .+|. +|++||++|+.+||+||+.++..++
T Consensus 452 i~~aria~Ggvap~-p~ra~~~E~~L~Gk~~~~~~~~~A~~~l~~~~~p~~~d~r~sa~YRr~la~~ll~kf~~~~~~~~ 530 (1330)
T TIGR02969 452 IRELSISYGGVGPT-TICAKNSCQKLIGRPWNEEMLDTACRLILDEVSLAGSAPGGKVEFKRTLIISFLFKFYLEVSQIL 530 (1330)
T ss_pred EeEEEEEEEcCcCc-eecHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999 9999999999999999999999999999999976 5544 8999999999999999999999877
Q ss_pred cCCCccccCCCCCCCccccccccccccccccccccccCCccccccccC--CCC--CCCCCcccccchhhhcccccccccc
Q 001024 534 NGISRDWLCGYSNNVSLKDSHVQQNHKQFDESKVPTLLSSAEQVVQLS--REY--YPVGEPITKSGAALQASGEAIYVDD 609 (1185)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~--~~~--~~iG~~~~r~d~~~kvtG~a~Y~~D 609 (1185)
....+... +.++.. ..+ ....+++|++.+.|.|+.. .+. ++|||+++|+|++.||||+++|++|
T Consensus 531 ~~~~~~~~---~~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGk~v~r~d~~~kvtG~a~Y~~D 598 (1330)
T TIGR02969 531 KRMDPGHY---PSLADK-------YES--ALEDLHSKHHWSTLKHQNVDSMQLPQDPIGHPIMHLSGVKHATGEAIYCDD 598 (1330)
T ss_pred cccccccc---ccCChh-------hcc--ccccccCCCCccccceecccccccccCcCCCCCcChhhHhhccccccccCC
Confidence 32111100 011111 111 2357788999999988742 222 8999999999999999999999999
Q ss_pred CCCCCCcEEEEEEecCCCCeEEeeccCccCCCCCCeEEEEEcCCCCCCCCCCCCccccCCcccccCCceeecCCeEEEEE
Q 001024 610 IPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSEPLFADELTRCAGQPVAFVV 689 (1185)
Q Consensus 610 i~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~pGVv~Vvt~~Dip~~g~n~~~~~~~~~~~~~a~~~V~y~GqpVa~VV 689 (1185)
++.+|||||++|||||++||+|++||+++|++||||++|+|++|+| +.|. +.++|+|++++|+|+|||||+||
T Consensus 599 i~~~pgmL~a~~vrSp~ahArI~sID~s~A~~~pGV~~V~t~~Dvp--~~~~-----~~~~~~la~~~Vr~~Gqpva~Vv 671 (1330)
T TIGR02969 599 MPAVDQELFLTFVTSSRAHAKIVSIDLSEALSLPGVVDIITAEHLQ--DANT-----FGTEKLLATDKVHCVGQLVCAVI 671 (1330)
T ss_pred CCCCCCCEEEEEEecCCCceEEEeeeHHHHhcCCCeEEEEeHHHCC--CCCC-----CCCeeecCCCeEEEcCCeEEEEE
Confidence 9745899999999999999999999999999999999999999998 3332 24789999999999999999999
Q ss_pred ECCHHHHHHhcccceEEEecCCCCCccCCHHHHhhcCCCcccCCccccCCCCChhcccccCCeeEEEEEEEeccccCCCc
Q 001024 690 ADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKGMNEADHRILAAEIKLGSQYYFYM 769 (1185)
Q Consensus 690 Aes~~~A~~Aa~~V~Vey~~e~l~p~v~~~e~Al~~~~~~~~~~~~~~~~~Gdv~~af~~a~~~vve~~~~~~~q~H~~m 769 (1185)
|+|+++|++|+++|+|+| |+|+|+++|+++|+++++++... .....||++++|++|+++ ||++|++++|+|+||
T Consensus 672 Aet~~~A~~Aa~~V~VeY--e~l~~~v~d~~~Al~~~a~~~~~---~~~~~Gdv~~af~~a~~v-ve~~y~~~~~~H~~m 745 (1330)
T TIGR02969 672 ADSEVQAKQAAKHVKIVY--RDLEPLILTIEEAIQHKSFFEPE---RKLEYGNVDEAFKVVDQI-LEGEIHMGGQEHFYM 745 (1330)
T ss_pred ECCHHHHHHHhcCCEEEE--ecCCCCcCCHHHHhcCCCEeccc---ccccCCchhhhhccCCEE-EEEEEEECCEeeccc
Confidence 999999999999999999 78856679999999988754321 135789999999999985 999999999999999
Q ss_pred CCCceEEEECC-CCcEEEEeCCCChHHHHHHHHHHhCCCCccEEEEEcccCCCCCCCCccccHHHHHHHHHHHhCCCCEE
Q 001024 770 ETQTALAVPDE-DNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPVATACALAAYKLCRPVR 848 (1185)
Q Consensus 770 Ep~~avA~~~~-dg~l~V~~sTQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFGgK~~~~~~~~~~aAlaA~~~gRPVr 848 (1185)
||++|+|+|++ ||+|+||+|||+|+.+|..||++||||++||+|+++++|||||+|.+.....++.||++|+++|||||
T Consensus 746 Ep~~~~A~~~~~~g~l~V~~stQ~p~~~r~~vA~~Lglp~~kVrV~~~~vGGgFG~K~~~~~~~~~~aA~aA~~~gRPVk 825 (1330)
T TIGR02969 746 ETQSMLVVPKGEDQEMDVYVSTQFPKYIQDIVAATLKLPVNKVMCHVRRVGGAFGGKVGKTSIMAAITAFAANKHGRAVR 825 (1330)
T ss_pred CCCEEEEEEeCCCCeEEEEECCcCHHHHHHHHHHHhCCCHHHeEEEeCCcccCcccccccccHHHHHHHHHHHHhCCCEE
Confidence 99999999984 57899999999999999999999999999999999999999999987544456889999999999999
Q ss_pred EEeChhhhhhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEeeCCCCCCCCc-chhhhccccCCCcccCcEEEEEEEeecC
Q 001024 849 IYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVSP-IMPSNMIGALKKYDWGALHFDIKVCRTN 927 (1185)
Q Consensus 849 l~~sReed~~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~s~-~~~~~~~~~~~~Y~ipn~~~~~~~v~TN 927 (1185)
|+|||+|+|+++++||++.++||+|+++||+|++++++++.|+|+|.+.+. ++.....+..++|+|||++++++.|+||
T Consensus 826 ~~~sR~e~~~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~~~~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN 905 (1330)
T TIGR02969 826 CTLERGEDMLITGGRHPYLGKYKAGFMNDGRIVALDVEHYSNGGSSLDESLWVIEMGLLKMDNAYKFPNLRCRGWACRTN 905 (1330)
T ss_pred EEecHHHHhhhcCCcCceEEEEEEEECCCCCEEEEEEEEEEecccccCcchHHHHHHHHhcCCCccCCcEEEEEEEEECC
Confidence 999999999999999999999999999999999999999999999998775 5555566778999999999999999999
Q ss_pred CCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCcccccccCCCccccCCHHHHHHHHHHhCCchhH
Q 001024 928 LPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLFYESSAGEYAEYTLPLIWDKLAVSSSFNQR 1007 (1185)
Q Consensus 928 ~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lG~DP~e~R~~Nl~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~r 1007 (1185)
+||++||||||.+|++|++|++|||+|++|||||+|||++|++++++.+ ||..+.+ ...+++||+++++.++|++|
T Consensus 906 ~~~~~a~RG~G~~q~~fa~E~~mD~lA~~lg~DP~e~R~~N~~~~gd~~-p~~~~~~---~~~~~~~l~~~~~~~~~~~r 981 (1330)
T TIGR02969 906 LPSNTAFRGFGFPQAGLITEACITEVAAKCGLSPEKVRTINMYKEIDQT-PYKQEIN---AKNLFQCWRECMAKSSYSER 981 (1330)
T ss_pred CCCCCccCCCchHHHHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCcccC-CCCcccC---CCcHHHHHHHHHHhcCHHHH
Confidence 9999999999999999999999999999999999999999999877653 3433222 23899999999999999998
Q ss_pred HHHHHHHHhcCCcceeeeeeeceeeccccc-----ccceEEEEeeCCcEEEEECCcCCCCcchhHHHHHHHHHhcccccC
Q 001024 1008 TEMIKEFNRSNLWRKKGVCRLPIVHEVTLR-----STPGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCG 1082 (1185)
Q Consensus 1008 ~~~~~~~n~~~~~~~rGia~~~~~~~~~~~-----~~~a~V~v~~DGsV~V~~g~~e~GqG~~T~~aQIaA~~Lgi~~~~ 1082 (1185)
++.++.||+.++|++||+|++++.|+.++. +..|.|+|++||+|+|.+|++|||||++|+++||+|++|||
T Consensus 982 ~~~~~~~~~~~~~~~rGiG~a~~~~~~~~~~~~~~~~~a~v~i~~DGsV~V~~G~~e~GQG~~T~~aQiaAe~LGi---- 1057 (1330)
T TIGR02969 982 KVAVEKFNAENYWKKRGLAVIPLKFPVGLGSVAMGQAAALVHIYLDGSVLVTHGGIEMGQGVHTKMIQVVSRELKM---- 1057 (1330)
T ss_pred HHHHHHHhccCCCeEEEEEEEEEEeccccccCCCCCccEEEEEcCCceEEEEECCcCcCCChHHHHHHHHHHHhCC----
Confidence 888788898889999999999998887543 57899999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEcCCCcccccCccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhCCCCeE
Q 001024 1083 GTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASCQVVRDCCNILVERLTLLRERLQGQMGNVEWETLIQQVHICSSEAL 1162 (1185)
Q Consensus 1083 ~~~~p~e~V~v~~~dT~~~p~~~~t~gS~~t~~~g~Av~~Ac~~L~~rL~~~aa~~~~~~~~~~~~~~v~~a~~~~v~l~ 1162 (1185)
|+|+|+|..+||+.+||+++|+|||+|+++|+||++||++|++||++++++. ...+|.+++..+|..+++|+
T Consensus 1058 ----p~e~V~v~~~DT~~~p~~~gt~gSr~t~~~G~Av~~A~~~l~~rl~~~aa~~----~~~~~~~~~~~~~~~~~~l~ 1129 (1330)
T TIGR02969 1058 ----PMSNVHLRGTSTETVPNTNASGGSVVADLNGLAVKDACQTLLKRLEPIISKN----PQGTWKDWAQTAFDQSISLS 1129 (1330)
T ss_pred ----CHHHEEEEcCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CCCCHHHHHHhhccCCCceE
Confidence 9999999999999999999999999999999999999999999999998853 24789999987887789999
Q ss_pred EEEEec
Q 001024 1163 STEFIL 1168 (1185)
Q Consensus 1163 a~~~~~ 1168 (1185)
+.+||.
T Consensus 1130 ~~~~~~ 1135 (1330)
T TIGR02969 1130 AVGYFR 1135 (1330)
T ss_pred EEEEec
Confidence 999985
No 5
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=100.00 E-value=1.7e-137 Score=1307.27 Aligned_cols=562 Identities=22% Similarity=0.278 Sum_probs=481.7
Q ss_pred CCCCCcccccchhhhccccccccccCCCCCCcEEEEEEecCCCCeEEeeccCccCCCCCCeEEEEEcCCCCCC-----CC
Q 001024 585 YPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEG-----GQ 659 (1185)
Q Consensus 585 ~~iG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~pGVv~Vvt~~Dip~~-----g~ 659 (1185)
+.|||+++|+|++.||||+++|++|+. +|||||++++|||++||+|+|||+++|++||||++|+|++|+|.. +.
T Consensus 170 ~~VGk~~~R~d~~~kvtG~a~Y~~D~~-~pgmL~a~vvrSp~ahArI~sID~s~A~a~pGV~~Vvt~~Dvp~~~~~~~~~ 248 (956)
T PRK09800 170 EVIGKHYPKTDAAKMVQAKPCYVEDRV-TADACVIKMLRSPHAHALITHLDVSKAEALPGVVHVITHLNCPDIYYTPGGQ 248 (956)
T ss_pred ccCCCCCCCcChHhhCcccccccccCC-CCCCEEEEEeecCCCcEEEeeeEHHHHHhCCCeEEEEcHHHCCcccccccCc
Confidence 468999999999999999999999997 789999999999999999999999999999999999999999831 11
Q ss_pred CCCCccccCCcccccCCceeecCCeEEEEEECCHHHHHHhcccceEEEecCCCCCccCCHHHHhhcCCC--ccc------
Q 001024 660 NIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSL--FEV------ 731 (1185)
Q Consensus 660 n~~~~~~~~~~~~~a~~~V~y~GqpVa~VVAes~~~A~~Aa~~V~Vey~~e~l~p~v~~~e~Al~~~~~--~~~------ 731 (1185)
..+ ....+.+.|++++|||+|||||+|||+|+++|++|+++|+|+| |+| |+++|+++|++++++ |+.
T Consensus 249 ~~~--~~~~~~~~l~~~~Vry~G~~vaaVvAet~~~A~~A~~~V~Vey--e~L-p~v~d~~~Al~~~a~~vh~~~~~~~~ 323 (956)
T PRK09800 249 SAP--EPSPLDRRMFGKKMRHVGDRVAAVVAESEEIALEALKLIDVEY--EVL-KPVMSIDEAMAEDAPVVHDEPVVYVA 323 (956)
T ss_pred CCC--CCCCCCccccCCeEEEcCCeEEEEEECCHHHHHHHhcCCceEE--EeC-CccCCHHHHhcCCCceeccccccccc
Confidence 111 1111234456999999999999999999999999999999999 889 899999999998874 321
Q ss_pred ------------------------------CCcc---ccCCCCChhcccccCCeeEEEEEEEeccccCCCcCCCceEEEE
Q 001024 732 ------------------------------PSFL---YPKPVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVP 778 (1185)
Q Consensus 732 ------------------------------~~~~---~~~~~Gdv~~af~~a~~~vve~~~~~~~q~H~~mEp~~avA~~ 778 (1185)
+.|+ .....||++++|++|+++ ||++|++++|+|+||||++|+|+|
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Nv~~~~~~~~Gd~~~af~~a~~v-ve~~y~~~~~~H~~mEp~~aiA~~ 402 (956)
T PRK09800 324 GAPDTLEDDNSHAAQRGEHMIINFPIGSRPRKNIAASIHGHIGDMDKGFADADVI-IERTYNSTQAQQCPTETHICFTRM 402 (956)
T ss_pred ccccccccccccccccccccccccccccCCCCceeeeccccCCCHHHHHhhCCEE-EEEEEEeCCcccccCCCceEEEEE
Confidence 1122 224679999999999985 999999999999999999999999
Q ss_pred CCCCcEEEEeCCCChHHHHHHHHHHhCCCCccEEEEEcccCCCCCCCCccccHHHHHHHHHHHhCCCCEEEEeChhhhhh
Q 001024 779 DEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMI 858 (1185)
Q Consensus 779 ~~dg~l~V~~sTQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFGgK~~~~~~~~~~aAlaA~~~gRPVrl~~sReed~~ 858 (1185)
++ |+|+||+|||+|+.+|..||++||||++||||+.+++|||||+|... .....||++|+++||||||+|||+|+|.
T Consensus 403 d~-~~l~v~~stQ~p~~~r~~vA~~LGlp~~kVrV~~~~vGGgFG~K~~~--~~e~~aA~aA~~~grPVkl~~tReE~~~ 479 (956)
T PRK09800 403 DG-DRLVIHASTQVPWHLRRQVARLVGMKQHKVHVIKERVGGGFGSKQDI--LLEEVCAWATCVTGRPVLFRYTREEEFI 479 (956)
T ss_pred eC-CeeEEEECCCcHHHHHHHHHHHHCCCHHHeEEEcCCCCccCcCcccc--cHHHHHHHHHHHhCCCEEEEeeHHHHhh
Confidence 85 48999999999999999999999999999999999999999999853 2445689999999999999999999999
Q ss_pred hcCCCCceEEEEEEEeCCCCcEEEEEEEEEeeCCCCCCCCc-chhhhccccCCCcccCcEEEEEEEeecCCCCCCccCCC
Q 001024 859 MVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVSP-IMPSNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAP 937 (1185)
Q Consensus 859 ~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~s~-~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~ 937 (1185)
++++||++.+++|+|+|+||+|+|++++++.|+|+|.+++. +......+..++|+|||++++++.|+||++|+|+||||
T Consensus 480 ~~~~R~~~~~~~k~g~d~dG~I~a~~~~~~~d~Gay~~~~~~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~ 559 (956)
T PRK09800 480 ANTSRHVAKVTVKLGAKKDGRLTAVKMDFRANTGPYGNHSLTVPCNGPALSLPLYPCDNVDFQVTTYYSNICPNGAYQGY 559 (956)
T ss_pred CcCCCCceEEEEEEEECCCCCEEEEEEEEEEcCCcCCCcchHHHHHHHhhcCcCcccceEEEEEEEEECCCCCCCCcCCC
Confidence 99999999999999999999999999999999999987665 33333445568999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCccccc------ccCCCcc-c-cCCHHHHHHHHHHhCCchhHHH
Q 001024 938 GEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLFY------ESSAGEY-A-EYTLPLIWDKLAVSSSFNQRTE 1009 (1185)
Q Consensus 938 G~~q~~fa~E~~mDelA~~lG~DP~e~R~~Nl~~~~~~~~~~------~~~~g~~-~-~~~~~~~l~~~~~~~~~~~r~~ 1009 (1185)
|.||+.|++|++||++|++|||||+|||+||++++|+....+ ..+.+.+ . ...+.+||+++++.++|+++++
T Consensus 560 G~pq~~fa~Es~mDelA~~lg~DPve~R~rN~~~~gd~~~~~~~~~~g~~~~~~~~~~s~~~~~~L~~~~e~~~w~~~~~ 639 (956)
T PRK09800 560 GAPKGNFAITMALAELAEQLQIDQLEIIERNRVHEGQELKILGAIGEGKAPTSVPSAASCALEEILRQGREMIQWSSPKP 639 (956)
T ss_pred CcchHHHHHHHHHHHHHHHhCcCHHHHHHHhCCCCCcccccccccccccccccCccccCCCHHHHHHHHHHhcCcchhhh
Confidence 999999999999999999999999999999999877542110 0011222 1 2378999999999999987532
Q ss_pred HHHHHHhcCCcc-eeeeeeeceeeccc-ccccceEEEEeeCCcEEEEECCcCCCCcchhHHHHHHHHHhcccccCCCCCC
Q 001024 1010 MIKEFNRSNLWR-KKGVCRLPIVHEVT-LRSTPGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNL 1087 (1185)
Q Consensus 1010 ~~~~~n~~~~~~-~rGia~~~~~~~~~-~~~~~a~V~v~~DGsV~V~~g~~e~GqG~~T~~aQIaA~~Lgi~~~~~~~~p 1087 (1185)
.+++|+ |+|+++.+..++.+ ...+.+.|+|++||+|+|.+|++|||||++|+++||+|++||+ |
T Consensus 640 ------~~g~~~~G~Gia~~~~~~g~~~~~~~~a~v~l~~dGsv~v~~g~~e~GqG~~T~~~QiaAe~LGi--------p 705 (956)
T PRK09800 640 ------QNGDWHIGRGVAIIMQKSGIPDIDQANCMIKLESDGTFIVHSGGADIGTGLDTVVTKLAAEVLHC--------P 705 (956)
T ss_pred ------hcCCCeeEEEEEEEEEcccCCCCCCceEEEEECCCceEEEEECCCCCCccHHHHHHHHHHHHHCC--------C
Confidence 235564 55555443222322 1257789999999999999999999999999999999999999 9
Q ss_pred CCcEEEEcCCCcccccCccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------------CCCCCHHHHH
Q 001024 1088 LEKVRVVQADTLSVIQGGFTAGSTTSEASCQVVRDCCNILVERLTLLRERLQGQ----------------MGNVEWETLI 1151 (1185)
Q Consensus 1088 ~e~V~v~~~dT~~~p~~~~t~gS~~t~~~g~Av~~Ac~~L~~rL~~~aa~~~~~----------------~~~~~~~~~v 1151 (1185)
+|+|+|..+||+.+|++++|+|||+|+++|+||++||++||+||+.+++++++. .+.++|.+++
T Consensus 706 ~d~V~v~~~DT~~~p~~~gt~aSr~t~~~G~Av~~Aa~~l~~kl~~~aa~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 785 (956)
T PRK09800 706 PQDVHVISGDTDHALFDKGAYASSGTCFSGNAARLAAENLREKILFHGAQMLGEPVADVQLATPGVVRGKKGEVSFGDIA 785 (956)
T ss_pred ceeEEEEeCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHEEEecCCEEeCCCCcccHHHHH
Confidence 999999999999999999999999999999999999999999999999887641 1247899999
Q ss_pred HHHHhC--CCCeEEEEEecCC
Q 001024 1152 QQVHIC--SSEALSTEFILFN 1170 (1185)
Q Consensus 1152 ~~a~~~--~v~l~a~~~~~~~ 1170 (1185)
..++.. ...|.++++|..+
T Consensus 786 ~~~~~~~~~~~l~~~~~~~~~ 806 (956)
T PRK09800 786 HKGETGTGFGSLVGTGSYITP 806 (956)
T ss_pred HHHhcCCCCCCeEEEEEecCC
Confidence 877653 3479999999654
No 6
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=100.00 E-value=2.5e-135 Score=1289.17 Aligned_cols=562 Identities=22% Similarity=0.299 Sum_probs=479.3
Q ss_pred CCCCCcccccchhhhccccccccccCCCCCCcEEEEEEecCCCCeEEeeccCccCCCCCCeEEEEEcCCCCCC-----CC
Q 001024 585 YPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEG-----GQ 659 (1185)
Q Consensus 585 ~~iG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~pGVv~Vvt~~Dip~~-----g~ 659 (1185)
+.|||+++|+|++.||||+++|++|+. +|||||++++|||++||+|+|||+++|++||||++|+|.+|+|.. +.
T Consensus 166 ~~iGk~~~R~d~~~kvtG~a~Y~~D~~-~pgmL~a~v~rSP~ahArI~sID~s~A~a~pGV~~Vvt~~D~p~~~~~~~~~ 244 (951)
T TIGR03313 166 TIIGKNCPKIDAAKMVQAKPCYVEDRV-PADACVIKMLRSPHPHAWITHLDVSKAEALPGVVHVITHLNCPDIYYTPGGQ 244 (951)
T ss_pred ccCCCCCcCcChHhhCccCccccccCC-CCCCEEEEEEecCCCcEEEEeeEHHHHHhCCCeEEEEeHHHCCccccCCCCc
Confidence 468999999999999999999999997 789999999999999999999999999999999999999999831 11
Q ss_pred CCCCccccCCcccccCCceeecCCeEEEEEECCHHHHHHhcccceEEEecCCCCCccCCHHHHhhcCCC--ccc------
Q 001024 660 NIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSL--FEV------ 731 (1185)
Q Consensus 660 n~~~~~~~~~~~~~a~~~V~y~GqpVa~VVAes~~~A~~Aa~~V~Vey~~e~l~p~v~~~e~Al~~~~~--~~~------ 731 (1185)
+.+ ....+++.|++++|||+|||||+|||+|+|+|++|+++|+||| |+| |+++|+++|++++++ |+.
T Consensus 245 ~~~--~~~~~~~~l~~~~Vry~G~~vaaVvAet~~~A~~A~~~I~Vey--e~L-p~v~d~~~Al~~~ap~ih~~~~~~~~ 319 (951)
T TIGR03313 245 SAP--EPSPLDRRMFGQKMRHVGDRVAAVVAESEEIALHALKLIEVEY--DVL-TPVMSIDEAMAAEAPIVHDEPIVYGA 319 (951)
T ss_pred cCC--CCCCCcccccCCeEEEcCCEEEEEEECCHHHHHHHhcCCeeEE--EeC-CccCCHHHHhcCCCCeeccccccccc
Confidence 111 0112344568999999999999999999999999999999999 888 899999999998874 321
Q ss_pred ------------------------------CCcc---ccCCCCChhcccccCCeeEEEEEEEeccccCCCcCCCceEEEE
Q 001024 732 ------------------------------PSFL---YPKPVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVP 778 (1185)
Q Consensus 732 ------------------------------~~~~---~~~~~Gdv~~af~~a~~~vve~~~~~~~q~H~~mEp~~avA~~ 778 (1185)
+.|+ .....||++++|++|+++ ||++|++++|+|+||||++|+|+|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Nv~~~~~~~~Gd~~~af~~A~~v-ve~~y~~~~~~H~~mEp~~aiA~~ 398 (951)
T TIGR03313 320 GAPDDLEEQNANADPRGEHMIINFPIGSRPRKNIAASVHGHIGDLNKGFAEADVI-IERTYESTQAQQCPTETHICFTYM 398 (951)
T ss_pred cccccccccccccccccccccccccccccCCCceeeeccccCCCHHHHHhcCCEE-EEEEEEECCEeeecCCCceEEEEE
Confidence 0121 124679999999999985 999999999999999999999999
Q ss_pred CCCCcEEEEeCCCChHHHHHHHHHHhCCCCccEEEEEcccCCCCCCCCccccHHHHHHHHHHHhCCCCEEEEeChhhhhh
Q 001024 779 DEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMI 858 (1185)
Q Consensus 779 ~~dg~l~V~~sTQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFGgK~~~~~~~~~~aAlaA~~~gRPVrl~~sReed~~ 858 (1185)
++ ++|+||+|||+|+.+|..||++||||++||||+++++|||||+|.... ....||++|+++||||||+|||+|+|+
T Consensus 399 d~-~~l~V~~stQ~p~~~r~~vA~~Lglp~~kVrV~~~~vGGgFG~K~~~~--~e~~aA~aA~~~GrPVkl~~tReE~~~ 475 (951)
T TIGR03313 399 DG-ERLVIHASTQVPWHVRRQVARIVGMKQHKVHVIKERVGGGFGSKQDIL--LEEVCAWATWVTGRPVYFRYTREEEFI 475 (951)
T ss_pred cC-CeEEEEECCcCHHHHHHHHHHHHCCCHHHeEEEcCCCCcCcCCccccc--HHHHHHHHHHHhCCCEEEEeeHHHHhh
Confidence 85 479999999999999999999999999999999999999999998532 345589999999999999999999999
Q ss_pred hcCCCCceEEEEEEEeCCCCcEEEEEEEEEeeCCCCCCCCcchh-hhccccCCCcccCcEEEEEEEeecCCCCCCccCCC
Q 001024 859 MVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVSPIMP-SNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAP 937 (1185)
Q Consensus 859 ~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~s~~~~-~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~ 937 (1185)
++++||++.+++|+|+++||+|+||+++++.|+|+|.+++..+. .......++|+|||++++.+.++||++|.||||||
T Consensus 476 ~~~~R~~~~~~~k~g~d~dG~I~A~~~~~~~d~Gay~~~~~~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~Rg~ 555 (951)
T TIGR03313 476 CNTSRHVAKVTVKLGAKKDGKLTAIDMDFRANTGPYGNHSLTVPSNGPALSLPLYPCDNVDFRVTTYYSNICPTGAYQGY 555 (951)
T ss_pred ccCCCCCeEEEEEEEECCCCcEEEEEEEEEEcCccCcccchHHhhhhhhhcCcCccCCeEEEEEEEEECCCCCCCCcCCC
Confidence 99999999999999999999999999999999999987654222 22234458899999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCccccc------ccCCCcc-c-cCCHHHHHHHHHHhCCchhHHH
Q 001024 938 GEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLFY------ESSAGEY-A-EYTLPLIWDKLAVSSSFNQRTE 1009 (1185)
Q Consensus 938 G~~q~~fa~E~~mDelA~~lG~DP~e~R~~Nl~~~~~~~~~~------~~~~g~~-~-~~~~~~~l~~~~~~~~~~~r~~ 1009 (1185)
|.+|+.|++|++||++|++|||||+|||+||++++|+..... ..+.+.+ . ..++.+||++++++++|+++.+
T Consensus 556 G~~q~~fa~Es~mDelA~~lG~DP~e~R~rN~~~~gd~~~~~~~~~~g~~~~~~~~~~s~~~~~~l~~~~~~~~w~~~~~ 635 (951)
T TIGR03313 556 GAPKGNFALTMAMAELAEELGIDQLEMIETNRVHEGQELKILGAIGEGKMPTSVPKAASCALEEILRQGRELIEWDSPKQ 635 (951)
T ss_pred CcccHHHHHHHHHHHHHHHhCcCHHHHHHHhCCCCCcccccccccccccccccccccCCCcHHHHHHHHHHhcCccchhh
Confidence 999999999999999999999999999999999887643110 0011111 1 2378999999999999987542
Q ss_pred HHHHHHhcCCcc-eeeeeeeceeecccc-cccceEEEEeeCCcEEEEECCcCCCCcchhHHHHHHHHHhcccccCCCCCC
Q 001024 1010 MIKEFNRSNLWR-KKGVCRLPIVHEVTL-RSTPGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNL 1087 (1185)
Q Consensus 1010 ~~~~~n~~~~~~-~rGia~~~~~~~~~~-~~~~a~V~v~~DGsV~V~~g~~e~GqG~~T~~aQIaA~~Lgi~~~~~~~~p 1087 (1185)
+.++|+ |+|+++.....+.+. ....+.|+|++||+|+|.+|++|||||++|+++||+|+.||+ |
T Consensus 636 ------~~g~~~~G~Gia~~~~~~g~~~~~~~~a~v~l~~dG~v~v~~g~~e~GqG~~T~~~QiaAe~LGv--------p 701 (951)
T TIGR03313 636 ------AKGDWKIGRGVAIIMQKSGIPDIDQANCMIKLESDGTFIVHSGGADIGTGLDTVVSKLTAEVLHC--------P 701 (951)
T ss_pred ------hccCceeeeEEEEEEecccCCCCCCccEEEEEcCCceEEEEECCCCCCccHHHHHHHHHHHHHCC--------C
Confidence 235664 455554322223221 257889999999999999999999999999999999999999 9
Q ss_pred CCcEEEEcCCCcccccCccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------------CCCCCHHHHH
Q 001024 1088 LEKVRVVQADTLSVIQGGFTAGSTTSEASCQVVRDCCNILVERLTLLRERLQGQ----------------MGNVEWETLI 1151 (1185)
Q Consensus 1088 ~e~V~v~~~dT~~~p~~~~t~gS~~t~~~g~Av~~Ac~~L~~rL~~~aa~~~~~----------------~~~~~~~~~v 1151 (1185)
+|+|+|..+||+.+|++++|+|||+|+++|+||++||++||+||+.+++++++. .+.++|.+++
T Consensus 702 ~d~V~v~~~DT~~~p~~~gt~aSr~t~~~G~Av~~Aa~~l~~kl~~~aa~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 781 (951)
T TIGR03313 702 MDDVHVISGDTDHALFDKGAYASSGTCFSGNAAKRAAENLREKILFHGAEMLGEPVADVDLAAPGLVRGKTGEVSYFDIA 781 (951)
T ss_pred HHhEEEEeCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHEEEecCCEEeCCCCcccHHHHH
Confidence 999999999999999999999999999999999999999999999998887641 1247899998
Q ss_pred HHHHhC--CCCeEEEEEecCC
Q 001024 1152 QQVHIC--SSEALSTEFILFN 1170 (1185)
Q Consensus 1152 ~~a~~~--~v~l~a~~~~~~~ 1170 (1185)
..++.. ...+.++++|..+
T Consensus 782 ~~~~~~~~~~~~~~~~~~~~~ 802 (951)
T TIGR03313 782 HKAETGTGFGQLVGTGSYITS 802 (951)
T ss_pred HHHhccCCCCCeEEEEEecCC
Confidence 777632 3468999988543
No 7
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=100.00 E-value=6.3e-133 Score=1261.15 Aligned_cols=507 Identities=26% Similarity=0.361 Sum_probs=447.4
Q ss_pred CCCcccccchhhhccccccccccCCCCCCcEEEEEEecCCCCeEEeeccCccCCCCCCeEEEEEcCCCCCCCCCCCCccc
Q 001024 587 VGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSKTI 666 (1185)
Q Consensus 587 iG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~pGVv~Vvt~~Dip~~g~n~~~~~~ 666 (1185)
||++++|+|+.+||||+++|++|+. +|||||++++|||++||+|++||+|+|++||||++|+|++|+|. ..+.+. .
T Consensus 162 iG~~~~R~d~~~kvtG~~~Y~~Di~-~pgmL~a~~vrSp~ahA~I~~ID~s~A~a~PGV~aVvt~~Dip~-~~~~g~--~ 237 (848)
T TIGR03311 162 LGENFPRVDAVPKVLGEGVYVDDMQ-IEGMLYGSALRSKYPRALVKSIDITVALKHPGVVAVLTAKDIPG-NRKIGH--I 237 (848)
T ss_pred CCCccCCcChhhhCcccccccccCC-CCCCEEEEEEeCCCCCEEEEeeEHHHHHhCCCcEEEEeHHHCCC-ccCCCC--C
Confidence 6888999999999999999999997 68999999999999999999999999999999999999999982 122222 1
Q ss_pred cCCcc-ccc-CCceeecCCeEEEEEECCHHHHHHhcccceEEEecCCCCCccCCHHHHhhcCCC--cccCCcc---ccCC
Q 001024 667 FGSEP-LFA-DELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSL--FEVPSFL---YPKP 739 (1185)
Q Consensus 667 ~~~~~-~~a-~~~V~y~GqpVa~VVAes~~~A~~Aa~~V~Vey~~e~l~p~v~~~e~Al~~~~~--~~~~~~~---~~~~ 739 (1185)
..++| +|+ +++|||+|||||+|||+|+++|++|+++|+|+| +++ |+++|+++|+++++. |+ +.|+ ....
T Consensus 238 ~~~~~~~~a~~~~Vry~Ge~VA~VvA~t~~~A~~A~~~V~Vey--e~l-p~v~d~~~A~~~~a~~i~~-~~Nv~~~~~~~ 313 (848)
T TIGR03311 238 FKDWPALIAVGEITRYVGDAVALVAAKSKEALREALNLIKVDY--EEL-PPLTSPEEALAEGAPAIHP-KGNILSEEHVV 313 (848)
T ss_pred CCCccccccCCCEEEEcCCeEEEEEECCHHHHHHHhCCCcEEE--ecC-CCcCCHHHHhcCCCCeECC-CCCCcceeeec
Confidence 23444 343 589999999999999999999999999999999 888 899999999998873 43 2333 2357
Q ss_pred CCChhcccccCCeeEEEEEEEeccccCCCcCCCceEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCccEEEEEcccC
Q 001024 740 VGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVG 819 (1185)
Q Consensus 740 ~Gdv~~af~~a~~~vve~~~~~~~q~H~~mEp~~avA~~~~dg~l~V~~sTQ~p~~~r~~vA~~Lglp~~kV~V~~~~vG 819 (1185)
.||++++|++|+++ ||++|++++|+|+||||++|+|+|++ |+|+||+|||+|+.+|..||++||||++||||+.+++|
T Consensus 314 ~Gdv~~af~~A~~v-ve~~y~~~~~~h~~mEp~~~vA~~~~-~~l~v~~stQ~p~~~r~~vA~~Lglp~~~VrV~~~~vG 391 (848)
T TIGR03311 314 RGDAEEALENSAYV-VTNHYSTPFTEHAFLEPESALAVPEG-DGVIIYTSTQGVYDEQRELASLLGLPKEKIRVINKFVG 391 (848)
T ss_pred CCCHHHHhhcCCeE-EEEEEEECCEeeeecCCceEEEEEeC-CeEEEEECCcCHHHHHHHHHHHhCCChHHEEEEeCCCC
Confidence 89999999999995 99999999999999999999999985 46999999999999999999999999999999999999
Q ss_pred CCCCCCCccccHHHHHHHHHHHhCCCCEEEEeChhhhhhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEeeCCCCCCCCc
Q 001024 820 GAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVSP 899 (1185)
Q Consensus 820 GgFGgK~~~~~~~~~~aAlaA~~~gRPVrl~~sReed~~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~s~ 899 (1185)
||||+|.... .+..||++|+++||||||+|||+|+|+++++||++.+++|+|+|+||+|++++++++.|+|+|.+++.
T Consensus 392 GgFG~K~~~~--~~~~aA~~A~~~gRPVkl~~sR~E~~~~~~~R~~~~~~~k~g~d~dG~i~a~~~~~~~d~Gay~~~~~ 469 (848)
T TIGR03311 392 GGFGGKEDMS--VQHHAALLAWATKRPVKVTLTRKESILVHPKRHAMEMTFTTGCDEAGNLTAMKADIIADTGAYASLGG 469 (848)
T ss_pred CcCCcccccc--HHHHHHHHHHHhCCCEEEEechHHhhhccCCCCceEEEEEEEECCCCcEEEEEEEEEEccccCCCccH
Confidence 9999998643 44678999999999999999999999999999999999999999999999999999999999998765
Q ss_pred -chhhhccccCCCcccCcEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCcccc
Q 001024 900 -IMPSNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLF 978 (1185)
Q Consensus 900 -~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lG~DP~e~R~~Nl~~~~~~~~~ 978 (1185)
++.....++.++|+|||++++++.|+||++|.++|||||.||++|++|++||++|++|||||+|||++|++++++.+
T Consensus 470 ~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lg~DP~E~R~rN~~~~gd~~-- 547 (848)
T TIGR03311 470 PVLQRACTHAAGPYKYPNVDIRGTAVYTNNPPAGAFRGFGVTQSNFAMECNLNLLAEKVGLSPWEIRFKNAVEPGDTL-- 547 (848)
T ss_pred HHHHHHHHhcCCCccCceEEEEEEEEECCCCCCCCccCCChhHHHHHHHHHHHHHHHHhCcCHHHHHHHhCCCCCCcC--
Confidence 44445556779999999999999999999999999999999999999999999999999999999999999887643
Q ss_pred cccCCCcccc-C-CHHHHHHHHHHhCCchhHHHHHHHHHhcCCcceeeeeeeceeeccccc---ccceEEEEeeCCcEEE
Q 001024 979 YESSAGEYAE-Y-TLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVTLR---STPGKVSILSDGSVVV 1053 (1185)
Q Consensus 979 ~~~~~g~~~~-~-~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~~~rGia~~~~~~~~~~~---~~~a~V~v~~DGsV~V 1053 (1185)
+.|+.++ . .+++||+++++. |++ ++++|+++.....|.+.. ...+.+.++ ||+|+|
T Consensus 548 ---~~g~~~~~~~~~~~~l~~~~~~--~~~-------------~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~-DGsv~v 608 (848)
T TIGR03311 548 ---PNGQVVSEGTAIKETLLAVKEV--YEK-------------SPCAGIACAFKNSGVGVGIPDTGRCNLAVE-DGKVHI 608 (848)
T ss_pred ---CCCceeCCCchHHHHHHHHHHH--hhh-------------ccCCeEEEEEEEeccccCCCCcceEEEEEc-CCEEEE
Confidence 3455554 2 589999998874 431 134567664333333321 346677776 999999
Q ss_pred EECCcCCCCcchhHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCcccccCccCccchhhHHHHHHHHHHHHHHHHHHHH
Q 001024 1054 EVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASCQVVRDCCNILVERLTL 1133 (1185)
Q Consensus 1054 ~~g~~e~GqG~~T~~aQIaA~~Lgi~~~~~~~~p~e~V~v~~~dT~~~p~~~~t~gS~~t~~~g~Av~~Ac~~L~~rL~~ 1133 (1185)
.+|++|||||++|+++||+|+.||| |+|+|+|..+||+.+|++++|+|||+|.++|+||++||++||+||+.
T Consensus 609 ~~g~~e~GQG~~T~~aQiaAe~LGi--------p~e~V~v~~~DT~~~p~~~gt~aSR~t~~~G~Av~~Aa~~l~~~l~~ 680 (848)
T TIGR03311 609 RTSAACIGQGLGTVLTQIVCETTGL--------PPEVIVCELPDTALTPDSGTTTASRQSLFTGEATRRAAAKLKEALRG 680 (848)
T ss_pred EECCCCcCcCHHHHHHHHHHHHHCC--------CHHHEEEEcCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999 99999999999999999999999999999999999999999999975
Q ss_pred H
Q 001024 1134 L 1134 (1185)
Q Consensus 1134 ~ 1134 (1185)
.
T Consensus 681 ~ 681 (848)
T TIGR03311 681 R 681 (848)
T ss_pred c
Confidence 4
No 8
>COG4631 XdhB Xanthine dehydrogenase, molybdopterin-binding subunit B [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.6e-115 Score=974.23 Aligned_cols=565 Identities=32% Similarity=0.483 Sum_probs=530.7
Q ss_pred CCCCCcccccchhhhccccccccccCCCCCCcEEEEEEecCCCCeEEeeccCccCCCCCCeEEEEEcCCCCCCCCCCCCc
Q 001024 585 YPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSK 664 (1185)
Q Consensus 585 ~~iG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~pGVv~Vvt~~Dip~~g~n~~~~ 664 (1185)
..+|.+.++-++..+|+|.|.|+|||+.++|.||+++-.|+++||+|+++|.+++++.|||+.|+|++|+| |.|-. .
T Consensus 17 ~~v~~~~~HeSAhkHV~GtA~YiDD~pepag~LH~~~gls~~aHAri~~mDl~~v~a~PGVv~vlta~DvP--GenDi-s 93 (781)
T COG4631 17 GGVGTSLRHESAHKHVTGTAVYIDDIPEPAGTLHGALGLSERAHARITRMDLSAVRAAPGVVDVLTAADVP--GENDI-S 93 (781)
T ss_pred CcccccccccchhhcccceeEEecCCCCcccchhhhccccccchheeeecchHHhhcCCCeEEEEEecCCC--CCCCC-C
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999 77742 2
Q ss_pred cccCCcccccCCceeecCCeEEEEEECCHHHHHHhcccceEEEecCCCCCccCCHHHHhhcCCCcccCCccccCCCCChh
Q 001024 665 TIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDIS 744 (1185)
Q Consensus 665 ~~~~~~~~~a~~~V~y~GqpVa~VVAes~~~A~~Aa~~V~Vey~~e~l~p~v~~~e~Al~~~~~~~~~~~~~~~~~Gdv~ 744 (1185)
+...|+|+|++++|.|+||||.+|+|+|+++|++|+.+.+||| |+| |+++|+.+|++.+.+.. ++ ...++||.+
T Consensus 94 p~~hddpl~a~gkVef~GQ~vfaV~A~s~e~ARraA~~a~ieY--e~l-p~~~di~~a~a~~~~v~-~p--~~l~rGD~~ 167 (781)
T COG4631 94 PVKHDDPLLADGKVEFHGQPVFAVIAESREAARRAARLAKIEY--EDL-PPVTDIDEAIAAGRLVT-PP--LTLKRGDAA 167 (781)
T ss_pred cccCCCccccCceEEEccceEEEEeehhHHHHHHHHHhhhccc--ccC-CccCCHHHHhhcccccC-Cc--hhhcccchh
Confidence 3357999999999999999999999999999999999999999 999 99999999999886543 22 257899999
Q ss_pred cccccCCeeEEEEEEEeccccCCCcCCCceEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCccEEEEEcccCCCCCC
Q 001024 745 KGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGG 824 (1185)
Q Consensus 745 ~af~~a~~~vve~~~~~~~q~H~~mEp~~avA~~~~dg~l~V~~sTQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFGg 824 (1185)
.+|+.|.+. ++|+++++.|+|||+|.|.++|.|+|||.++||+|||.|..+|..||++||+|.|.|.|.+.||||||||
T Consensus 168 a~~~~Ap~r-~~G~~~iGGQehFYLEgqia~a~p~Ed~~v~v~~STQhPtE~Q~~vahvLGvpsn~VtV~~rRMGGGFGG 246 (781)
T COG4631 168 AALAAAPHR-LQGEMRIGGQEHFYLEGQIALAVPGEDGDVTVWSSTQHPTEVQHLVAHVLGVPSNAVTVEVRRMGGGFGG 246 (781)
T ss_pred hhhhhCchh-heeeEEEcCeeeEEEeeeeeEeccCCCCCEEEEecCCCcHHHHHHHHHHhCCCcceEEEEEEeecCCcCc
Confidence 999999996 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHHHhCCCCEEEEeChhhhhhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEeeCCCCCCCCc-chhh
Q 001024 825 KAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVSP-IMPS 903 (1185)
Q Consensus 825 K~~~~~~~~~~aAlaA~~~gRPVrl~~sReed~~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~s~-~~~~ 903 (1185)
|++.....++.||++|+|+|||||+..+|.|||+++||||+++..|++|||+||+|++++..+..++|++.|+|. ++++
T Consensus 247 KEtQ~~~fAa~aA~aA~k~~r~vk~RpdRdeDm~~TGKRHdF~v~y~vGfDdeGri~~v~~~~aarcGfS~DLSgpV~dR 326 (781)
T COG4631 247 KETQANQFAALAALAAKKTGRPVKIRPDRDEDMTATGKRHDFHVDYEVGFDDEGRILGVDATLAARCGFSADLSGPVTDR 326 (781)
T ss_pred ccccchHHHHHHHHHHHHhCCceeecCCcchhhhhccCcCceEEEeeeccCCCCcEEEeeeehhhccCcccccCccchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887 8999
Q ss_pred hccccCCCcccCcEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCc-ccccccC
Q 001024 904 NMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSL-NLFYESS 982 (1185)
Q Consensus 904 ~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lG~DP~e~R~~Nl~~~~~~-~~~~~~~ 982 (1185)
+++|+++.|.+|++++.++.++||+.++++|||||.||+++++|.+||++|..||+||+|+|++|+|.++.. ..||..-
T Consensus 327 AlfH~DNaYf~p~v~~~s~~~kTntvSnTAfRGFGGPQGm~~~Eriid~vA~alGkdpleiRk~NfYg~~~~n~TpYhQ~ 406 (781)
T COG4631 327 ALFHADNAYFYPHVHILSRPLKTNTVSNTAFRGFGGPQGMLGIERIIDEVAYALGKDPLEIRKLNFYGKDGRNVTPYHQT 406 (781)
T ss_pred heeccccceeccceeeecceeeccccccccccccCCcchhhHHHHHHHHHHHHhCCCHHHHHhhhccCCCCCccCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999986542 1233321
Q ss_pred CCccccCCHHHHHHHHHHhCCchhHHHHHHHHHhcCCcceeeeeeeceeeccccc-----ccceEEEEeeCCcEEEEECC
Q 001024 983 AGEYAEYTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVTLR-----STPGKVSILSDGSVVVEVGG 1057 (1185)
Q Consensus 983 ~g~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~~~rGia~~~~~~~~~~~-----~~~a~V~v~~DGsV~V~~g~ 1057 (1185)
+.+..+.++|+++...++|..|++++..||+..+..||||++.|.+||+++. +.+|.|+||.||||.++||+
T Consensus 407 ---Vednii~ri~~ELeaSsdyaaRr~~i~aFNa~spv~krGlAlTPVKFGISFt~t~~NQAGALVHvY~DGSi~lNHGG 483 (781)
T COG4631 407 ---VEDNIIARIVDELEASSDYAARREAIRAFNAASPVIKRGLALTPVKFGISFTATHYNQAGALVHVYTDGSIHLNHGG 483 (781)
T ss_pred ---hHHhHHHHHHHHHHhcchHHHHHHHHHHhhccChhhhccccccceeeeEEEeeeeeccCceEEEEeccCeEEEcCCC
Confidence 2234788999999999999999999999999999999999999999999764 78999999999999999999
Q ss_pred cCCCCcchhHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCcccccCccCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001024 1058 IEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASCQVVRDCCNILVERLTLLRER 1137 (1185)
Q Consensus 1058 ~e~GqG~~T~~aQIaA~~Lgi~~~~~~~~p~e~V~v~~~dT~~~p~~~~t~gS~~t~~~g~Av~~Ac~~L~~rL~~~aa~ 1137 (1185)
+|||||++||++||+|++++| +++.|+|..++|+++||++.|++|.|++++|+|+++||+|+|+||..+|++
T Consensus 484 TEMGQGL~tKvaQVvA~~fqv--------d~~rVkitaT~T~KVpNTSaTAASSGsDLNGmAa~dAa~qIk~RLv~fAA~ 555 (781)
T COG4631 484 TEMGQGLYTKVAQVVAEEFQV--------DIDRVKITATTTDKVPNTSATAASSGSDLNGMAAQDAARQIKERLVAFAAE 555 (781)
T ss_pred cccccchhHHHHHHHHHHhCc--------ccceEEEeccccCCCCCCccccccccCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HhCC---------------CCCCCHHHHHHHHHhCCCCeEEEEEecCC
Q 001024 1138 LQGQ---------------MGNVEWETLIQQVHICSSEALSTEFILFN 1170 (1185)
Q Consensus 1138 ~~~~---------------~~~~~~~~~v~~a~~~~v~l~a~~~~~~~ 1170 (1185)
-|+. ...+.|.++|+.||..+|.|+|.|||+-+
T Consensus 556 ~~~V~~~~v~F~~n~vrig~~~~~F~~lv~~AY~arvqLsaaGFY~TP 603 (781)
T COG4631 556 HWGVPEEDVAFLPNRVRIGGQELAFADLVKQAYFARVQLSAAGFYKTP 603 (781)
T ss_pred hcCCCHHHeEecCCeeEEcceecCHHHHHHHHhheeeeeeccccccCC
Confidence 8862 23589999999999999999999999744
No 9
>TIGR02965 xanthine_xdhB xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase.
Probab=100.00 E-value=1.1e-112 Score=1072.28 Aligned_cols=564 Identities=32% Similarity=0.475 Sum_probs=510.4
Q ss_pred CCCcccccchhhhccccccccccCCCCCCcEEEEEEecCCCCeEEeeccCccCCCCCCeEEEEEcCCCCCCCCCCCCccc
Q 001024 587 VGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSKTI 666 (1185)
Q Consensus 587 iG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~pGVv~Vvt~~Dip~~g~n~~~~~~ 666 (1185)
+||+++|+|+..|+||+++|++|+..+|||||++++|||++||+|++||+++|++||||++|+|++|+| +.|.. ...
T Consensus 1 ~G~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~aha~I~~iD~s~A~~~pGV~~V~t~~D~p--~~~~~-g~~ 77 (758)
T TIGR02965 1 VGTSLKHESAHKHVAGTAVYIDDIPEPAGTLHAALGLSTRAHARITSMDLSAVRAAPGVVDVLTAADIP--GENDI-SPI 77 (758)
T ss_pred CCCCccCcchHhhCceeeEcccCCCCCCCCEEEEEEecCCCceEEeecchHHHhcCCCcEEEEEHHHCC--CCCCC-CCC
Confidence 699999999999999999999999536899999999999999999999999999999999999999998 33321 112
Q ss_pred cCCcccccCCceeecCCeEEEEEECCHHHHHHhcccceEEEecCCCCCccCCHHHHhhcCCCcccCCccccCCCCChhcc
Q 001024 667 FGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSLFEVPSFLYPKPVGDISKG 746 (1185)
Q Consensus 667 ~~~~~~~a~~~V~y~GqpVa~VVAes~~~A~~Aa~~V~Vey~~e~l~p~v~~~e~Al~~~~~~~~~~~~~~~~~Gdv~~a 746 (1185)
..++|+|++++|||+|||||+|||+|+++|++|+++|+|+| |+| |+++|+++|++++++...+. .....||++++
T Consensus 78 ~~~~~~la~~~Vry~Ge~va~VvA~~~~~A~~A~~~i~V~y--e~l-p~v~d~~~Al~~~a~~~~~~--~~~~~Gd~~~a 152 (758)
T TIGR02965 78 IHDDPLLADGKVEFVGQPIFAVIATSRDAARRAARLAKIEY--EEL-PAVLDIEEALAAGSRFVTPP--LTLERGDAEAA 152 (758)
T ss_pred CCCceeccCCEEEEcCCeEEEEEECCHHHHHHHhhccEEEE--EcC-CccCCHHHHhcCCCCcccCc--ccccCCCHHHH
Confidence 35889999999999999999999999999999999999999 888 89999999999886432111 13578999999
Q ss_pred cccCCeeEEEEEEEeccccCCCcCCCceEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCccEEEEEcccCCCCCCCC
Q 001024 747 MNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFGGKA 826 (1185)
Q Consensus 747 f~~a~~~vve~~~~~~~q~H~~mEp~~avA~~~~dg~l~V~~sTQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFGgK~ 826 (1185)
|++|+++ ||++|++++|+|+||||++|+|+|+++|+|+||+|||+|+.+|..||++||||++||||+++++|||||+|.
T Consensus 153 f~~a~~v-ve~~y~~~~~~h~~mEp~~~vA~~~~~g~l~v~~stQ~p~~~r~~lA~~Lglp~~~VrV~~~~vGGgFG~K~ 231 (758)
T TIGR02965 153 LAAAPHR-LSGEMRIGGQEHFYLEGQIALAVPGEDGGMHVWSSTQHPSEVQHLVAHVLGVPSHAVTVEVRRMGGGFGGKE 231 (758)
T ss_pred HhhCCEE-EEEEEEECCEeEEecCCceEEEEEcCCCCEEEEECCCChHHHHHHHHHHhCCChHHEEEEeCCCccCccccc
Confidence 9999995 999999999999999999999999977789999999999999999999999999999999999999999998
Q ss_pred ccccHHHHHHHHHHHhCCCCEEEEeChhhhhhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEeeCCCCCCCCc-chhhhc
Q 001024 827 IKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVSP-IMPSNM 905 (1185)
Q Consensus 827 ~~~~~~~~~aAlaA~~~gRPVrl~~sReed~~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~s~-~~~~~~ 905 (1185)
....+.++.||++|+++||||||+|||+|+|+++++||++.+++|+|+++||+|++++++++.|+|+|.+.+. ++....
T Consensus 232 ~~~~~~~~~aa~~A~~~grPVk~~~sR~E~~~~~~~r~~~~~~~~~g~~~dG~i~a~~~~~~~d~Gay~~~~~~~~~~~~ 311 (758)
T TIGR02965 232 TQANLFACLAAVAARKTGRPVKLRPDRDDDMMITGKRHDFLVDYDVGFDDEGRILGVDIDMAARCGFSADLSGPVTDRAL 311 (758)
T ss_pred cccchHHHHHHHHHHHHCCCEEEEechHHhhhhccCccceEEEEEEEECCCCCEEEEEEEEeecCcccCCcchHHHHHHH
Confidence 7544556889999999999999999999999999999999999999999999999999999999999987654 444455
Q ss_pred cccCCCcccCcEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCcccccccCCCc
Q 001024 906 IGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLFYESSAGE 985 (1185)
Q Consensus 906 ~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lG~DP~e~R~~Nl~~~~~~~~~~~~~~g~ 985 (1185)
....++|+|||++++++.|+||++|+|||||||.+|+.|++|++||++|++|||||+|||++|++++++. +.++.|.
T Consensus 312 ~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mD~~A~~lg~DP~e~R~~Nl~~~g~~---~~~~~g~ 388 (758)
T TIGR02965 312 FHADNAYFLPDVTITSHPLKTNTQSNTAFRGFGGPQGMVAIERIMDEVARALGKDPLEVRKRNFYGKDER---NVTPYHQ 388 (758)
T ss_pred HhcCCcccCCceEEEEEEEEcCCCCCccccCCChHHHHHHHHHHHHHHHHHhCcCHHHHHHHcCCCCCCC---CcCCCce
Confidence 5677999999999999999999999999999999999999999999999999999999999999987643 2334566
Q ss_pred cccC-CHHHHHHHHHHhCCchhHHHHHHHHHhcCCcceeeeeeeceeeccccc-----ccceEEEEeeCCcEEEEECCcC
Q 001024 986 YAEY-TLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVTLR-----STPGKVSILSDGSVVVEVGGIE 1059 (1185)
Q Consensus 986 ~~~~-~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~~~rGia~~~~~~~~~~~-----~~~a~V~v~~DGsV~V~~g~~e 1059 (1185)
++++ .+++||+++++.++|++|++..++||..++|++||+|+++..++.++. +..+.|+|++||+|+|.+|.+|
T Consensus 389 ~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~rGiG~a~~~~g~~~~~~~~~~~~a~v~i~~dG~v~v~~g~~e 468 (758)
T TIGR02965 389 TVEDNIIHEIIEELEESSDYAARRAAIRAFNAASPVLKKGIALTPVKFGISFTVTHLNQAGALVHVYTDGSIHLNHGGTE 468 (758)
T ss_pred eccCCcHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCceeEEEEeeeeccccccccccCccceEEEEeCCCcEEEEECCCC
Confidence 5544 899999999999999998877777888888889999998887776542 4778999999999999999999
Q ss_pred CCCcchhHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCcccccCccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001024 1060 MGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASCQVVRDCCNILVERLTLLRERLQ 1139 (1185)
Q Consensus 1060 ~GqG~~T~~aQIaA~~Lgi~~~~~~~~p~e~V~v~~~dT~~~p~~~~t~gS~~t~~~g~Av~~Ac~~L~~rL~~~aa~~~ 1139 (1185)
||||++|+++||+||+||+ |+|+|+|..+||+.+|++++|+|||+|.+.|+||++||++||+||+++|+++|
T Consensus 469 ~GQG~~T~laQIaAe~LGi--------~~d~V~v~~~DT~~~p~~~gT~gSr~t~~~g~Av~~Aa~~lr~~l~~~Aa~~l 540 (758)
T TIGR02965 469 MGQGLNTKVAQVVAEEFQV--------DIDRVKITATDTDKVPNTSATAASSGSDLNGMAAQDAARQIKERLVAFAAEKW 540 (758)
T ss_pred CCCCHHHHHHHHHHHHhCC--------CHHHEEEEecCccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999887
Q ss_pred CC---------------CCCCCHHHHHHHHHhCCCCeEEEEEecCC
Q 001024 1140 GQ---------------MGNVEWETLIQQVHICSSEALSTEFILFN 1170 (1185)
Q Consensus 1140 ~~---------------~~~~~~~~~v~~a~~~~v~l~a~~~~~~~ 1170 (1185)
+. .+.++|.+++..++..+..|.++++|..+
T Consensus 541 ~~~~~~l~~~~g~v~~~~~~~~~~~l~~~a~~~~~~l~~~~~~~~~ 586 (758)
T TIGR02965 541 QVPAEDVRFAPNHVRVGEQRVPFAELVQQAYFARVQLSSTGFYKTP 586 (758)
T ss_pred CCCHHHEEEECCEEEeCCCccCHHHHHHHHhhcCCCcEEEEEEcCC
Confidence 51 23588999999888777889999999654
No 10
>TIGR03194 4hydrxCoA_A 4-hydroxybenzoyl-CoA reductase, alpha subunit. This model represents the largest chain, alpha, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=100.00 E-value=4.8e-109 Score=1036.21 Aligned_cols=548 Identities=22% Similarity=0.266 Sum_probs=489.5
Q ss_pred ccccchhhhccccccccccCCCCCCcEEEEEEecCCCCeEEeeccCccCCCCCCeEEEEEcCCCCCCCCCCCCccccCCc
Q 001024 591 ITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSKTIFGSE 670 (1185)
Q Consensus 591 ~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~pGVv~Vvt~~Dip~~g~n~~~~~~~~~~ 670 (1185)
++|+|+..||||+++|++|+. +|||||++++|||++||+|++||+++|++||||++|+|++|+| + +.+......|+
T Consensus 1 ~~R~d~~~kvtG~a~Y~~D~~-~pgmL~a~vvrSp~ahA~I~siD~s~A~a~pGV~~V~t~~D~p--~-~~g~~~~~~d~ 76 (746)
T TIGR03194 1 VPLVDGVEKVTGKAKYTADLA-APGALVGRILRSPHAHARILAIDTSEAEALPGVIAVVTGADCP--V-PYGVLPIAENE 76 (746)
T ss_pred CcCcchHhhCccccccccCCC-CCCCEEEEEEecCCccEEEeeccHHHHHhCCCcEEEEeHHHCC--c-ccCCCCCCCCC
Confidence 479999999999999999998 6899999999999999999999999999999999999999998 2 32322223588
Q ss_pred ccccCCceeecCCeEEEEEECCHHHHHHhcccceEEEecCCCCCccCCHHHHhhcCCC--ccc-CCcc---ccCCCCChh
Q 001024 671 PLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSL--FEV-PSFL---YPKPVGDIS 744 (1185)
Q Consensus 671 ~~~a~~~V~y~GqpVa~VVAes~~~A~~Aa~~V~Vey~~e~l~p~v~~~e~Al~~~~~--~~~-~~~~---~~~~~Gdv~ 744 (1185)
|+|++++|||+|||||+|||+|+++|++|+++|+|+| |+| |+++|+++|+++++. |+. +.|+ .....||++
T Consensus 77 ~~la~~~Vr~~G~~VA~VvA~t~~~A~~A~~~v~Vey--e~l-p~v~d~~~Al~~~a~~ih~~~~~Nv~~~~~~~~Gd~~ 153 (746)
T TIGR03194 77 YPLARDKVRYRGDPVAAVAAVDEVTAEKALALIKVEY--EEL-PAYMDPKAAMKAGAILLHDNKPGNIEREVHNEFGDVA 153 (746)
T ss_pred ccCCCCeEEEcCCeEEEEEECCHHHHHHHhcCCcEEE--ecC-CCcCCHHHHhcCCCCccCCCCCCcEEEEEeeccCCHh
Confidence 9999999999999999999999999999999999999 889 899999999998875 432 2343 245789999
Q ss_pred cccccCCeeEEEEEEEeccccCCCcCCCceEEEECC-CCcEEEEeCCCChHHHHHHHHHHhCCCCccEEEEEcccCCCCC
Q 001024 745 KGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDE-DNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGAFG 823 (1185)
Q Consensus 745 ~af~~a~~~vve~~~~~~~q~H~~mEp~~avA~~~~-dg~l~V~~sTQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFG 823 (1185)
++|++|+++ ||++|++++|+|+||||++|+|+|++ +|+|+||+|||+|+.+|..||++||||++||||+++++|||||
T Consensus 154 ~a~~~a~~v-ve~~~~~~~~~h~~mEp~~~~A~~~~~~~~l~v~~stQ~p~~~r~~va~~Lglp~~kVrV~~~~vGGgFG 232 (746)
T TIGR03194 154 AAFAEADLI-REKTFTCAEVNHAHMEPNATLAEYDPVRGMLTLNSVTQVPYYVHLKLARCLQMDSARIRVIKPFLGGGFG 232 (746)
T ss_pred HHhccCCEE-EEEEEEECCEeEEccCCCeEEEEEeCCCCeEEEEECCCchHHHHHHHHHHhCCCHHHeEEEcCCCcCccc
Confidence 999999985 99999999999999999999999985 5789999999999999999999999999999999999999999
Q ss_pred CCCccccHHHHHHHHHHHhCCCCEEEEeChhhhhhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEeeCCCCCCCCc-chh
Q 001024 824 GKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVSP-IMP 902 (1185)
Q Consensus 824 gK~~~~~~~~~~aAlaA~~~gRPVrl~~sReed~~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~s~-~~~ 902 (1185)
+|... ..+++.||++|+++||||||+|||+|+|.++++||++.+++|+|+++||+|++++++++.|+|+|.++++ ++.
T Consensus 233 ~K~~~-~~~~~~aal~a~~~grPVk~~~~ReE~~~~~~~R~~~~~~~~~g~~~dG~i~a~~~~~~~d~Gay~~~~~~~~~ 311 (746)
T TIGR03194 233 ARVEP-LNFEIIAGLLARKAKGTVRLLQTREETFITHRGRPQTYVKMKIGLKKDGKITACAAEVVQRGGAYAGYGIVTIL 311 (746)
T ss_pred ccccc-chHHHHHHHHHHHhCCCEEEecchhhhhhcCCCCCceEEEEEEEECCCCeEEEEEEEEeecccccCCcchHHHH
Confidence 99864 3467889999999999999999999999999999999999999999999999999999999999998765 333
Q ss_pred hhccccCCCcccCcEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCcccccccC
Q 001024 903 SNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLFYESS 982 (1185)
Q Consensus 903 ~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lG~DP~e~R~~Nl~~~~~~~~~~~~~ 982 (1185)
.......++|+|||++++++.|+||++|+|+|||||.+|+.|++|++||++|++|||||+|||+||+.+.++. ++
T Consensus 312 ~~~~~~~g~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mD~lA~~lg~DPve~R~~N~~~~~~~-----~~ 386 (746)
T TIGR03194 312 YAGALLHGLYDIPAVKYDGYRVYTNTPPCGAMRGHGTVDTRAAFESLLDEMAAELGIDPFAIRRRNLLQAPTV-----TM 386 (746)
T ss_pred HHHHhcCCCcccceEEEEEEEEEcCCCCCCCCCCCChhHHHHHHHHHHHHHHHHhCcCHHHHHHHhCcCCCCC-----CC
Confidence 4444567999999999999999999999999999999999999999999999999999999999999876543 34
Q ss_pred CCccccC-CHHHHHHHHHHhCCchhHHHHHHHHHhcCCcceeeeeeeceeecccc---------cccceEEEEeeCCcEE
Q 001024 983 AGEYAEY-TLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVTL---------RSTPGKVSILSDGSVV 1052 (1185)
Q Consensus 983 ~g~~~~~-~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~~~rGia~~~~~~~~~~---------~~~~a~V~v~~DGsV~ 1052 (1185)
.|.++++ ++++||++++++++|++|++.. +++||+|+++..++.+. .++.+.|++++||+|+
T Consensus 387 ~g~~~~s~~~~~~l~~~~e~~~w~~~~~~~--------~~~rGiG~a~~~~~~~~~~~~~~~~~~~~~a~v~l~~dG~v~ 458 (746)
T TIGR03194 387 NDLRVMSYGLPECLEKVEQASGWEERKGRL--------PKGRGLGIACSHFVSGSAKPIHFTGEPHATVALKLDFDGGIT 458 (746)
T ss_pred CCceecCCCHHHHHHHHHHhcCchhhhhhc--------cccEEEEEEEEEEeccCCcccccCCCCCceEEEEEcCCccEE
Confidence 5655544 8999999999999998764421 24677777766664322 2578999999999999
Q ss_pred EEECCcCCCCcchhHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCcccccCccCccchhhHHHHHHHHHHHHHHHHHHH
Q 001024 1053 VEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASCQVVRDCCNILVERLT 1132 (1185)
Q Consensus 1053 V~~g~~e~GqG~~T~~aQIaA~~Lgi~~~~~~~~p~e~V~v~~~dT~~~p~~~~t~gS~~t~~~g~Av~~Ac~~L~~rL~ 1132 (1185)
|.+|++|||||++|+++||+|+.||+ |+|+|+|..+||+.+|++++|+|||+|++.|+||++||++||+||+
T Consensus 459 v~~g~~e~GqG~~T~~~qiaAe~LGi--------p~d~V~v~~~DT~~~p~~~gt~~Sr~t~~~G~Av~~Aa~~l~~~l~ 530 (746)
T TIGR03194 459 LLTGAADIGQGSSTIASQVAAEVLGV--------RLSRIRVISADSALTPKDNGSYSSRVTFMVGNAAIDAAEELKGVLV 530 (746)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhCC--------CHHhEEEEccCCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCC------------------CCCCCHHHHHHHHHhCCCCeEEEEEec
Q 001024 1133 LLRERLQGQ------------------MGNVEWETLIQQVHICSSEALSTEFIL 1168 (1185)
Q Consensus 1133 ~~aa~~~~~------------------~~~~~~~~~v~~a~~~~v~l~a~~~~~ 1168 (1185)
++++++++. +..++|.+++..++...+.|.++++|.
T Consensus 531 ~~aa~~l~~~~~~l~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 584 (746)
T TIGR03194 531 AAAAKKLDAREEDIECAGEMFFVSGSADPGLSFQEVVKAALVDSGTITVKGTYT 584 (746)
T ss_pred HHHHHHhCCCHHHEEEECCEEEECCCCCCceeHHHHHHHhcccCCCceEEEEec
Confidence 999988741 234789999977776667899999996
No 11
>PRK09970 xanthine dehydrogenase subunit XdhA; Provisional
Probab=100.00 E-value=1.4e-108 Score=1036.37 Aligned_cols=560 Identities=23% Similarity=0.280 Sum_probs=494.5
Q ss_pred CCCCcccccchhhhccccccccccCCCCCCcEEEEEEecCCCCeEEeeccCccCCCCCCeEEEEEcCCCCCCCCCC---C
Q 001024 586 PVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNI---G 662 (1185)
Q Consensus 586 ~iG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~pGVv~Vvt~~Dip~~g~n~---~ 662 (1185)
.|||+++|+|+..||||+++|++|+. +|||||++++|||++||+|+|||+++|++||||++|+|++|+| +.|+ +
T Consensus 2 ~vG~~~~r~d~~~kvtG~~~Y~~D~~-~~gmL~a~~~rSp~aharI~siD~~~A~~~pGV~~Vvt~~D~p--~~~~~~~~ 78 (759)
T PRK09970 2 AIGKSIMRVDAIAKVTGRAKYTDDYV-MAGMLYAKYVRSPIAHGKVKSIDTEEARSLPGVEAVFTWEDVP--DIPFPTAG 78 (759)
T ss_pred CCCCCCcCcchHHhCcCCccccccCC-CCCCEEEEEEcCCCceEEEeeeeHHHHHhCCCcEEEEeHHHcC--Cccccccc
Confidence 58999999999999999999999997 6999999999999999999999999999999999999999998 3332 1
Q ss_pred Cc------cccCCcccccCCceeecCCeEEEEEECCHHHHHHhcccceEEEecCCCCCccCCHHHHhhcCCC--cccCCc
Q 001024 663 SK------TIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSL--FEVPSF 734 (1185)
Q Consensus 663 ~~------~~~~~~~~~a~~~V~y~GqpVa~VVAes~~~A~~Aa~~V~Vey~~e~l~p~v~~~e~Al~~~~~--~~~~~~ 734 (1185)
.. ....++|+|++++|||+|||||+|||+|+++|++|+++|+|+| |+| |+++|+++|+++++. |+...|
T Consensus 79 ~~~~~~~~~~~~~~~~la~~~Vr~~G~~VAaVvA~~~~~A~~A~~~i~Vey--e~l-p~v~~~~~Al~~~a~~ih~~~~n 155 (759)
T PRK09970 79 HPWSLDPNHRDIADRALLTRHVRHHGDAVAAVVARDELTAEKALKLIKVEY--EEL-PVITDPEAALAEGAPPIHNGRGN 155 (759)
T ss_pred cccCCCCCCCCCCCccCcCCEEEEcCCeEEEEEeCCHHHHHHHhCCCcEeE--EeC-CccCCHHHHhCCCCCccCCCCCc
Confidence 00 0113789999999999999999999999999999999999999 888 899999999988774 421133
Q ss_pred cc---cCCCCChhcccccCCeeEEEEEEEeccccCCCcCCCceEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCccE
Q 001024 735 LY---PKPVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNV 811 (1185)
Q Consensus 735 ~~---~~~~Gdv~~af~~a~~~vve~~~~~~~q~H~~mEp~~avA~~~~dg~l~V~~sTQ~p~~~r~~vA~~Lglp~~kV 811 (1185)
+. ....||++++|++|+++ ||++|++++|+|+||||++|+|+|+++|+|+||+|||+|+.+|..||++||||++||
T Consensus 156 i~~~~~~~~Gd~~~a~~~a~~v-ve~~y~~~~~~h~~mEp~~~iA~~~~~g~l~v~~stQ~p~~~~~~ia~~Lglp~~~V 234 (759)
T PRK09970 156 LLKQSTMSTGNVQQTIKAADYQ-VQGHYETPIVQHCHMENVTSYAYMEDDGRITIVSSTQIPHIVRRVVGQALGIPWGKV 234 (759)
T ss_pred eeeeeeeccCChhHhhccCCEE-EEEEEEECCEeEeccCCceEEEEECCCCCEEEEECCCcHHHHHHHHHHHhCCCHHHE
Confidence 32 36789999999999995 999999999999999999999999876789999999999999999999999999999
Q ss_pred EEEEcccCCCCCCCCccccHHHHHHHHHHHhC-CCCEEEEeChhhhhhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEee
Q 001024 812 RVITRRVGGAFGGKAIKAMPVATACALAAYKL-CRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILID 890 (1185)
Q Consensus 812 ~V~~~~vGGgFGgK~~~~~~~~~~aAlaA~~~-gRPVrl~~sReed~~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d 890 (1185)
||+++++|||||+|..... ...||++|+++ ||||||+|||+|+|.++++||++.++||+|+|+||+|+|++++++.|
T Consensus 235 rV~~~~vGGgFG~K~~~~~--~~~aa~la~~~~grPVk~~~~R~E~~~~~~~r~~~~~~~~~g~~~dG~i~a~~~~~~~d 312 (759)
T PRK09970 235 RVIKPYVGGGFGNKQDVLE--EPLAAFLTSKVGGRPVKVSLSREECFLATRTRHAFTIDIKMGVNRDGTLKGYSLDVLSN 312 (759)
T ss_pred EEEeCCCCCCcCcccccCH--HHHHHHHHHHhcCCCeEEeechhHhhhcCCCCCceEEEEEEEECCCCcEEEEEEEEeec
Confidence 9999999999999986432 34577888888 99999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCc-chhhhccccCCCcccCcEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhc
Q 001024 891 AGLSPDVSP-IMPSNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINL 969 (1185)
Q Consensus 891 ~Ga~~~~s~-~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lG~DP~e~R~~Nl 969 (1185)
+|+|.+++. ++........++|+|||++++++.|+||++|+|||||||.+|+.|++|++||++|++|||||+|||+||+
T Consensus 313 ~Gay~~~~~~~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mD~~A~~lg~DP~e~R~~N~ 392 (759)
T PRK09970 313 TGAYASHGHSIASAGGNKVAYLYPRCAYKYSSKTVYTNLPSAGAMRGYGAPQVVFAVESMLDDAATALGIDPVEFRLRNA 392 (759)
T ss_pred cccCCCcchHHHHHHHhhcCCCccCceEEEEEEEEECCCCCCCCCCCCChhHHHHHHHHHHHHHHHHhCcCHHHHHHHhC
Confidence 999998765 3334445667999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccCC-Ccccc-CCHHHHHHHHHHhCCchhHHHHHHHHHhcCCcceeeeeeeceeeccccc-----ccceE
Q 001024 970 HTHKSLNLFYESSA-GEYAE-YTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVTLR-----STPGK 1042 (1185)
Q Consensus 970 ~~~~~~~~~~~~~~-g~~~~-~~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~~~rGia~~~~~~~~~~~-----~~~a~ 1042 (1185)
+++++.+ +. |..++ .++++||+++++.++|+++++..+. .+.|++||+|+++..++.++. .+.+.
T Consensus 393 ~~~g~~~-----~~~g~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~rGiG~a~~~~~~~~~~~~~~~~~a~ 464 (759)
T PRK09970 393 AREGDAN-----PLSGKRIYSAGLPECLEKGRKIFEWDKRRAECKN---QQGNLRRGVGVACFSYTSGTWPVGLEIAGAR 464 (759)
T ss_pred CCCCCcC-----CCCCeeecCCCHHHHHHHHHHhcCchhhhHhHhh---hcCCceEEEEEEEEEEeecCCCCCCCcceEE
Confidence 9876443 22 33333 3899999999999999987654331 234577899998877766543 47899
Q ss_pred EEEeeCCcEEEEECCcCCCCcchhHHHHHHHHHhcccccCCCCCCCCcEEEEcC-CCcccccCccCccchhhHHHHHHHH
Q 001024 1043 VSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQA-DTLSVIQGGFTAGSTTSEASCQVVR 1121 (1185)
Q Consensus 1043 V~v~~DGsV~V~~g~~e~GqG~~T~~aQIaA~~Lgi~~~~~~~~p~e~V~v~~~-dT~~~p~~~~t~gS~~t~~~g~Av~ 1121 (1185)
|+|++||+|+|.+|.+|||||++|+++||+||+||+ |+++|+|..+ ||+.+|++++|+|||++.+.|.||+
T Consensus 465 v~i~~dGsv~v~~g~~e~GQG~~T~~aQiaAe~LGi--------~~~~V~v~~~~dT~~~p~~~gt~aSr~t~~~g~Av~ 536 (759)
T PRK09970 465 LLMNQDGTVQVQSGATEIGQGSDTVFSQMVAETVGI--------PVSDVRVISTQDTDVTPFDPGAYASRQSYVAGPAIR 536 (759)
T ss_pred EEEccCceEEEEECCCCcCCCHHHHHHHHHHHHhCC--------CHHhEEEEccCCCCCCCCCCCCchhhhHHHHHHHHH
Confidence 999999999999999999999999999999999999 9999999988 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCC------------------CCCCHHHHHHHHHhC---CCCeEEEEEecCC
Q 001024 1122 DCCNILVERLTLLRERLQGQM------------------GNVEWETLIQQVHIC---SSEALSTEFILFN 1170 (1185)
Q Consensus 1122 ~Ac~~L~~rL~~~aa~~~~~~------------------~~~~~~~~v~~a~~~---~v~l~a~~~~~~~ 1170 (1185)
+||++||+||+.+++++++.. +.++|.+++..+|.. ...+.++++|+.+
T Consensus 537 ~Aa~~lr~~l~~~aa~~l~~~~~~l~~~~G~v~~~~~~~~~~~~~~la~~a~~~~~~~~~~~~~~~~~~~ 606 (759)
T PRK09970 537 KAALELKEKILAHAAVMLHQSAMNLDIIDGHIVVKRPGEPLMSLEELAMDAYYHPERGGQITAESSIKTT 606 (759)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHEEEECCEEEECCCCCccccHHHHHHHhhccccCCCceeEEEEecCC
Confidence 999999999999999887411 148899999888763 3468889888754
No 12
>TIGR02416 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large subunit. This model represents the large subunits of group of carbon-monoxide dehydrogenases that include molybdenum as part of the enzymatic cofactor. There are various forms of carbon-monoxide dehydrogenase; Salicibacter pomeroyi DSS-3, for example, has two forms. Note that, at least in some species, the active site Cys is modified with a selenium attached to (rather than replacing) the sulfur atom. This is termed selanylcysteine, and created post-translationally, in contrast to selenocysteine incorporation during translation as for many other selenoproteins.
Probab=100.00 E-value=1.4e-107 Score=1027.40 Aligned_cols=558 Identities=20% Similarity=0.188 Sum_probs=481.2
Q ss_pred chhhhccccccccccCCCCCCcEEEEEEecCCCCeEEeeccCccCCCCCCeEEEEEcCCCCCCCCCCCCcccc--CCccc
Q 001024 595 GAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGSKTIF--GSEPL 672 (1185)
Q Consensus 595 d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~pGVv~Vvt~~Dip~~g~n~~~~~~~--~~~~~ 672 (1185)
|+.++|||+++|++|+. +|||||++|+|||++||+|++||+++|++||||++|+|++|+| +.|....... .++|+
T Consensus 1 e~~r~vtG~a~Y~~Di~-~pgmL~a~~vrSp~aha~I~~ID~s~A~~~pGV~~V~t~~D~p--~~~~~~~~~~~~~~~~~ 77 (770)
T TIGR02416 1 EDIRFIQGKGNYVDDVK-LPGMLHGDIVRSPHAHARIKSIDTSAAKALPGVFAVLTAADLK--PLNLHWMPTLAGDVQAV 77 (770)
T ss_pred CCcccccccccccccCC-CCCCEEEEEEcCCCccEEEecccHHHHhhCCCcEEEEEHHHcC--CccCCcCCCCCCCCccc
Confidence 56789999999999998 6999999999999999999999999999999999999999998 3221111111 23799
Q ss_pred ccCCceeecCCeEEEEEECCHHHHHHhcccceEEEecCCCCCccCCHHHHhhcCCC--ccc-CC------------cc-c
Q 001024 673 FADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSL--FEV-PS------------FL-Y 736 (1185)
Q Consensus 673 ~a~~~V~y~GqpVa~VVAes~~~A~~Aa~~V~Vey~~e~l~p~v~~~e~Al~~~~~--~~~-~~------------~~-~ 736 (1185)
|++++|||+|||||+|||+|+++|++|+++|+|+| |+| |+|+|+++|+++++. |+. +. +. .
T Consensus 78 la~~~Vry~Ge~Va~VvA~t~~~A~~A~~~v~V~y--e~l-p~v~d~~~A~~~~a~~ih~~~~~~~~~~~~~~n~~~~~~ 154 (770)
T TIGR02416 78 LADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDY--EPL-PVVIDPFKALEPDAPVLREDLKGKTTGAHGARKHHNHIF 154 (770)
T ss_pred CcCCEEEEcCCcEEEEEECCHHHHHHHhccceeee--ecC-CccCCHHHHhcCCCceecCCCCCccccccccccccceee
Confidence 99999999999999999999999999999999999 788 899999999988764 321 11 11 1
Q ss_pred cC---CCCChhcccccCCeeEEEEEEEeccccCCCcCCCceEEEECC-CCcEEEEeCCCChHHHHHHHHHHhCCCCccEE
Q 001024 737 PK---PVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDE-DNCLVVYSSIQCPESAHATIARCLGIPEHNVR 812 (1185)
Q Consensus 737 ~~---~~Gdv~~af~~a~~~vve~~~~~~~q~H~~mEp~~avA~~~~-dg~l~V~~sTQ~p~~~r~~vA~~Lglp~~kV~ 812 (1185)
.. ..||++++|++|+++ ||++|++++|+|+||||++|+|+|++ +|+|+||+|||+|+.+|..||++||||++|||
T Consensus 155 ~~~~gd~gd~~~af~~a~~v-ve~~~~~~~~~h~~mEp~~~iA~~~~~~g~l~v~~stQ~p~~~r~~vA~~Lglp~~~Vr 233 (770)
T TIGR02416 155 RWEIGDKAATDAVFAKAEVV-VKQMMTYPRVHPSPLETCGCVASMDPIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIR 233 (770)
T ss_pred EEecCCccchhHHhccCCEE-EEEEEEeCceeeEcCCCCeEEEEEeCCCCeEEEEECCCcHHHHHHHHHHHhCCCHHHEE
Confidence 12 345679999999985 99999999999999999999999985 67899999999999999999999999999999
Q ss_pred EEEcccCCCCCCCCccccHHHHHHHHHHHhCCCCEEEEeChhhhhhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEeeCC
Q 001024 813 VITRRVGGAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILIDAG 892 (1185)
Q Consensus 813 V~~~~vGGgFGgK~~~~~~~~~~aAlaA~~~gRPVrl~~sReed~~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~G 892 (1185)
|+++++|||||+|..... ..+.||++|+++||||||+|||+|+|.++++||++.+++|+|+|+||+|++++++++.|+|
T Consensus 234 V~~~~vGGgFG~K~~~~~-~~~~aa~~A~~~gRPVk~~~sR~E~~~~~~~r~~~~~~~k~g~d~dG~i~a~~~~~~~d~G 312 (770)
T TIGR02416 234 VISPDIGGGFGNKVGIYP-GYVCAIVASIVLGVPVKWVEDRMENLSTTSFARDYHMTGELAATKDGKILAMRCNVLADHG 312 (770)
T ss_pred EEcCCCCCCccccccccc-HHHHHHHHHHHhCCCEEEecchHHhhhcCCCCCceEEEEEEEECCCCcEEEEEEEEEeecc
Confidence 999999999999986433 3345889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCc-chhhhcc--ccCCCcccCcEEEEEEEeecCCCCCC-ccC-CCChhHHHHHHHHHHHHHHHHcCCCHHHHHHh
Q 001024 893 LSPDVSP-IMPSNMI--GALKKYDWGALHFDIKVCRTNLPSRS-AMR-APGEVQGSFIAEAVIEHVASTLSMEVDFVRNI 967 (1185)
Q Consensus 893 a~~~~s~-~~~~~~~--~~~~~Y~ipn~~~~~~~v~TN~~~~g-a~R-g~G~~q~~fa~E~~mDelA~~lG~DP~e~R~~ 967 (1185)
+|.+++. ++..... ...++|+|||++++++.|+||++|.+ +|| |||.||+.|++|++||++|++|||||+|||++
T Consensus 313 ay~~~~~~~~~~~~~~~~~~g~Y~ipn~~~~~~~v~TN~~p~gta~Rgg~G~pq~~fa~E~~mD~~A~~lg~DP~e~R~~ 392 (770)
T TIGR02416 313 AFDACADPSKWPAGFFNICTGSYDIPVAHCAVDGVYTNKAPGGVAYRCSFRVTEAVYAIERAVDTLAQRLEMDSADLRIK 392 (770)
T ss_pred ccCCCccchhhhhhhhhhcCCccccceEEEEEEEEECCCCCCCCccccCCccHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 9987654 3222222 35689999999999999999999997 999 89999999999999999999999999999999
Q ss_pred hcCCCCCcccccccCCCccccC-CHHHHHHHHHHhCCchhHHHHHHHHHhcCCc-ceeeeeeeceeeccccc--------
Q 001024 968 NLHTHKSLNLFYESSAGEYAEY-TLPLIWDKLAVSSSFNQRTEMIKEFNRSNLW-RKKGVCRLPIVHEVTLR-------- 1037 (1185)
Q Consensus 968 Nl~~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~-~~rGia~~~~~~~~~~~-------- 1037 (1185)
|++++++ .||.++.|.++++ .+++||+++++.++|+++++..+.+++.+++ ..||+|++.+.+..+..
T Consensus 393 N~~~~~~--~p~~~~~g~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~G~a~~~~~~~~~~~~~~~~~ 470 (770)
T TIGR02416 393 NFIQPEQ--FPYTAPLGWEYDSGDYPLAMKKAMDTVDYHQLRAEQAAKRKRGETRELMGIGISFFTEIVGAGPSKNCDIL 470 (770)
T ss_pred hCCCCcc--CccccCCCceecCCCHHHHHHHHHHhcCchhhHHHHHHHHhcCCCCceEEEEEEEEEEeccCCCccccccc
Confidence 9998754 3677777776655 8999999999999999876655444444543 24577766544433222
Q ss_pred ----ccceEEEEeeCCcEEEEECCcCCCCcchhHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCcccccCccCccchhh
Q 001024 1038 ----STPGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTS 1113 (1185)
Q Consensus 1038 ----~~~a~V~v~~DGsV~V~~g~~e~GqG~~T~~aQIaA~~Lgi~~~~~~~~p~e~V~v~~~dT~~~p~~~~t~gS~~t 1113 (1185)
...+.|+|++||+|+|.+|++|||||++|+++||+|++||+ |+|+|+|..+||+.+|++++|+|||+|
T Consensus 471 ~~~~~~~a~v~l~~dG~v~v~~g~~e~GQG~~T~~aQiaAe~LGi--------p~e~V~v~~~DT~~~p~~~gt~~Sr~t 542 (770)
T TIGR02416 471 GVGMFDSCEIRIHPTGSAIARMGTKSQGQGHETTYAQIIATELGI--------PAEDIMVEEGDTDTAPYGLGTYGSRST 542 (770)
T ss_pred ccCccceEEEEECCCceEEEEECCCCCCCCchHHHHHHHHHHHCC--------CHHHEEEEecCCCCCCCCCCCchhHHH
Confidence 24589999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC------------------CCCCCHHHHHHHHHhC-----CCCeEEEEEecCC
Q 001024 1114 EASCQVVRDCCNILVERLTLLRERLQGQ------------------MGNVEWETLIQQVHIC-----SSEALSTEFILFN 1170 (1185)
Q Consensus 1114 ~~~g~Av~~Ac~~L~~rL~~~aa~~~~~------------------~~~~~~~~~v~~a~~~-----~v~l~a~~~~~~~ 1170 (1185)
.++|+||++||++||+||+++|+++++. ...++|.+++..+|.. ..+|.++++|..+
T Consensus 543 ~~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l~~~~g~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 622 (770)
T TIGR02416 543 PVAGAATALAARKIKAKAQMIAAHMLEVHEGDLEWDVDRFRVKGDPSKFKTMADIAWAAYNSPPPGLEPGLEAVNYYDPP 622 (770)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHEEEECCEEEECCCCCCcccHHHHHHHHhccCccCcCCceEEEEEeCCC
Confidence 9999999999999999999998887531 1137999999888753 2459999999653
No 13
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=100.00 E-value=9.8e-108 Score=1025.80 Aligned_cols=532 Identities=23% Similarity=0.327 Sum_probs=470.5
Q ss_pred CCCCccc-ccchhhhccccccccccCCCCCCcEEEEEEecCCCCeEEeeccCccCCCCCCeEEEEEcCCCCCCCCC-CCC
Q 001024 586 PVGEPIT-KSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQN-IGS 663 (1185)
Q Consensus 586 ~iG~~~~-r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~pGVv~Vvt~~Dip~~g~n-~~~ 663 (1185)
.|||+++ |+|++.||||+++|++|++ +|||||++++|||++||+|++||+++|++||||++|+|++|+| +.| .+.
T Consensus 2 ~iG~~~~~R~d~~~kvtG~a~Y~~Di~-~pgmL~a~~vrSp~aha~I~siD~s~A~a~pGV~~V~t~~D~p--~~~~~g~ 78 (768)
T TIGR03196 2 GIGKPSRVRPDGPDKVTGEFKYMGDLR-FPGMLHAKTLRSAHAHAEIRRVCTDAAEKLEGVQAMVTAADVP--GLARFGI 78 (768)
T ss_pred cCCCcCCcCcchHhhCcccccccccCC-CCCcEEEEEEecCCCcEEEeeccHHHHHhCCCcEEEEehHHCC--CCCCCCc
Confidence 5899999 9999999999999999998 6899999999999999999999999999999999999999998 333 222
Q ss_pred ccccCCcccccCCceeecCCeEEEEEECCHHHHHHhcccceEEEecCCCCCccCCHHHHhhcCCC--cccCCccc---cC
Q 001024 664 KTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSL--FEVPSFLY---PK 738 (1185)
Q Consensus 664 ~~~~~~~~~~a~~~V~y~GqpVa~VVAes~~~A~~Aa~~V~Vey~~e~l~p~v~~~e~Al~~~~~--~~~~~~~~---~~ 738 (1185)
...++|+|++++|||+|||||+|||+|+|+|++|+++|+|+| |+| |+++|+++|+++++. |+ +.|+. ..
T Consensus 79 --~~~~~~~la~~~Vr~~G~~VA~VvA~t~~~A~~A~~~v~Vey--e~l-p~v~d~~~a~~~~a~~i~~-~~ni~~~~~~ 152 (768)
T TIGR03196 79 --IIADQPVFAADEIRYAGDAIAAVAAEDEEIAEAALAAIEVDY--EEL-APMDDPDKALQPDAEPLHE-AGNILHEAEF 152 (768)
T ss_pred --cCCCcccccCCEEEEcCCeEEEEEECCHHHHHHHhccCceEE--EeC-CCcCCHHHHhcCCCCeECC-CCcCcceeee
Confidence 235889999999999999999999999999999999999999 788 889999999987653 43 23332 35
Q ss_pred CCCChhcccccCCeeEEEEEEEeccccCCCcCCCceEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCccEEEEEccc
Q 001024 739 PVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRV 818 (1185)
Q Consensus 739 ~~Gdv~~af~~a~~~vve~~~~~~~q~H~~mEp~~avA~~~~dg~l~V~~sTQ~p~~~r~~vA~~Lglp~~kV~V~~~~v 818 (1185)
..||++++|++|+++ ||++|++++|+|+||||++|+|+|++||+|+||+|||+|+.+|..||++||||++||||+++++
T Consensus 153 ~~Gd~~~af~~a~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~g~l~v~~stQ~p~~~r~~lA~~Lglp~~~VrV~~~~v 231 (768)
T TIGR03196 153 RHGDPDEGFAAGDTV-FEDQYELGMQDHAFLAPEAALAMPAADGGFDLRAATQHGHKDREQIAACFDIPEEKIRITLAGM 231 (768)
T ss_pred ccCCHhHHhccCCEE-EEEEEEeCCeeeeecCCceEEEEEcCCCCEEEEECCCchHHHHHHHHHHhCCCHHHEEEEeCCC
Confidence 789999999999985 9999999999999999999999999777899999999999999999999999999999999999
Q ss_pred CCCCCCCCccccHHHHHHHHHHHhCCCCEEEEeChhhhhhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEeeCCCCCCCC
Q 001024 819 GGAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVS 898 (1185)
Q Consensus 819 GGgFGgK~~~~~~~~~~aAlaA~~~gRPVrl~~sReed~~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~s 898 (1185)
|||||+|.... ..+.||++|+++||||||+|||+|+|+++++||++.+++|+|+++||+|++++++++.|+|+|.+++
T Consensus 232 GGgFG~K~~~~--~~~~aa~~A~~~gRPVk~~~sReE~~~~~~~r~~~~~~~k~g~~~dG~i~a~~~~~~~d~Gay~~~~ 309 (768)
T TIGR03196 232 GGAFGGKDDLN--IQIHAALLALASGLPVKIAQDRKESFLGGIHRHPAKITFKHGADADGNLLAHDAKIVADGGAYASLG 309 (768)
T ss_pred CCccCCccccc--HHHHHHHHHHHhCCCEEEEechHHhhhcCCCCCCeEEEEEEEECCCCcEEEEEEEEEecccccCCcc
Confidence 99999998643 3567899999999999999999999999999999999999999999999999999999999998876
Q ss_pred c-chhhhccccCCCcccCcEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCccc
Q 001024 899 P-IMPSNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNL 977 (1185)
Q Consensus 899 ~-~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lG~DP~e~R~~Nl~~~~~~~~ 977 (1185)
. +.......+.++|+|||++++++.++||++|.|||||||.+|+.|++|++||++|++|||||+|||++|+.++++..
T Consensus 310 ~~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~g~~~- 388 (768)
T TIGR03196 310 PAVLAFAVEHAAGPYRIPNAHLEGISVFTNNGPAGAFRGFGGNQITFAHEAHLDRLADALGIDPLDLRRKNARKPGDLG- 388 (768)
T ss_pred HHHHHHHHHhcCCCcccceEEEEEEEEEcCCCCCCccCCCChhHHHHHHHHHHHHHHHHhCcCHHHHHHHhCCCCCCcC-
Confidence 5 33344445679999999999999999999999999999999999999999999999999999999999999876643
Q ss_pred ccccCCCccccCCHHHHHHHHHHhCCch-----hHHHHHHHHH------hcCCcceeeeeeeceeeccccc-----c--c
Q 001024 978 FYESSAGEYAEYTLPLIWDKLAVSSSFN-----QRTEMIKEFN------RSNLWRKKGVCRLPIVHEVTLR-----S--T 1039 (1185)
Q Consensus 978 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~-----~r~~~~~~~n------~~~~~~~rGia~~~~~~~~~~~-----~--~ 1039 (1185)
++..+.+. .+.+++||++++++++|. ++...+..|+ ..+.|++||+||+++.++.++. + .
T Consensus 389 ~~g~~~~~--~~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~g~~~rGiG~a~~~~~~~~~~~~~~~~~~ 466 (768)
T TIGR03196 389 PLEHRIAA--PDGAAEVIEAIASRPLPKAPILKKANRAVTALPGGRPAAAECGRLQRGTGAAIAMHGGGFGEGMDDAAVA 466 (768)
T ss_pred CCCcccCC--cCCHHHHHHHHHhhccccchhhhhhhhhhhhhhhhhhhhhhcCCeeEEEEEEEEEecccCCCCccccCCc
Confidence 33333221 347899999999999998 3322221221 1223356788888777765432 2 2
Q ss_pred ceEEEEeeCCc--EEEEECCcCCCCcchhHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCcccccCccCccchhhHHHH
Q 001024 1040 PGKVSILSDGS--VVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASC 1117 (1185)
Q Consensus 1040 ~a~V~v~~DGs--V~V~~g~~e~GqG~~T~~aQIaA~~Lgi~~~~~~~~p~e~V~v~~~dT~~~p~~~~t~gS~~t~~~g 1117 (1185)
.+.|+|++||+ |+|.+|++|||||++|+++||+|++||| |+|+|+|..+||+.+|++++|+|||+|.+.|
T Consensus 467 ~a~v~l~~dGsv~v~v~~g~~d~GQG~~T~~aQiaAe~LGi--------p~e~V~v~~~DT~~~p~~~gt~~Sr~t~~~G 538 (768)
T TIGR03196 467 GARLELAEDGTVKIRAHFACAECGQGFLAAAEQIAMEELGC--------AAEDISIAIADTAKGPKAGSSSASRGTSMSG 538 (768)
T ss_pred cEEEEEeCCCCeEEEEEECCCCcCCCHHHHHHHHHHHHhCC--------CHHHEEEecCCCCCCCCCCCCchhhhhHhHH
Confidence 78999999996 8888999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Q 001024 1118 QVVRDCCNILVERLTLLRERLQG 1140 (1185)
Q Consensus 1118 ~Av~~Ac~~L~~rL~~~aa~~~~ 1140 (1185)
+||++||++||+||+++++++++
T Consensus 539 ~Av~~Aa~~l~~kl~~~aa~~l~ 561 (768)
T TIGR03196 539 GAIQGACAAFAAQLKARAAETAG 561 (768)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999887654
No 14
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.7e-103 Score=850.49 Aligned_cols=452 Identities=27% Similarity=0.458 Sum_probs=392.0
Q ss_pred ccccccHHHHHHHHhhcccccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEecCC
Q 001024 3 KSLRSQALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGL 82 (1185)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEg~ 82 (1185)
-+++.++|+.||.-++ ++|||+||+||+||||||+|++..+.. .+.|++||+||.++.++||+||+|||+|
T Consensus 23 v~P~~TlLd~LR~d~~--------ltGtKEGCAEGDCGACTVlVgrl~~g~-~l~yeSVNACirfl~sL~G~hvvTvE~L 93 (493)
T COG4630 23 VPPTTTLLDYLRLDRR--------LTGTKEGCAEGDCGACTVLVGRLVDGG-SLRYESVNACIRFLGSLDGTHVVTVEHL 93 (493)
T ss_pred CCcchHHHHHHHHhcc--------cccccccccCCCcCceEEEEEeecCCC-ceeeeehhHHHHHHhhcCCceEEEehhh
Confidence 3567788888887777 889999999999999999999987542 3899999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHhccCCCCCCCCchHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHhcCccccCCCChhHHHH
Q 001024 83 GNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIADA 162 (1185)
Q Consensus 83 ~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~~a 162 (1185)
+.+++.||||||+|+++|||||||||||||||||+|+.+ ++.|+ .+.|+++|+|||||||||+||++|
T Consensus 94 ~~~~g~LHpVQqamvd~hGSQCGfCTPGFVmSLyal~~~-----~~~P~-------~a~i~kALqGNLCRCTGY~pI~~A 161 (493)
T COG4630 94 RGQDGTLHPVQQAMVDFHGSQCGFCTPGFVMSLYALWMN-----SPTPS-------RAAIEKALQGNLCRCTGYRPIIRA 161 (493)
T ss_pred cCCCCCcCHHHHHHHhccCCccCCcCchHHHHHHHHHhc-----CCCCc-------hhHHHHHhhCCcccccCchHHHHH
Confidence 986667999999999999999999999999999999954 45554 899999999999999999999999
Q ss_pred HHHhhhcccccccCCcccccCCCCcccccCCCCCCCCCCCccCCCcchhc-ccCccccccC-CcEEEecCCHHHHHHHHH
Q 001024 163 CKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKK-ENSSAMLLDV-KGSWHSPISVQELRNVLE 240 (1185)
Q Consensus 163 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~~~~~~~~~-~~~~~~P~sl~ea~~ll~ 240 (1185)
...++.-... ..|.|....... +. +.|.- .....+.+.+ .-.++.|.+++++..+++
T Consensus 162 A~~~~a~~~~-------------------a~fDPl~~~R~~-~~-~~L~A~~~~e~v~~~~~~~r~~~P~~l~D~a~l~a 220 (493)
T COG4630 162 AEAIAALGPA-------------------AGFDPLAARRTA-IT-ARLRALRDTETVEVGSGDDRFIVPATLADFADLLA 220 (493)
T ss_pred HHHHhccCCc-------------------ccCChhhhhHHH-HH-HHHhhccCCcEEEecCCCceeEeeccHHHHHHHHh
Confidence 9977642100 001111000000 00 00000 0011234444 678999999999999999
Q ss_pred hhcCCCCCCcEEEeCCcccccc--cccCCCCeeEeCCCCCCCCceEEcCCeEEecccccHHHHHHHHHHhhhhhhhhhHh
Q 001024 241 SVEGSNQISSKLVAGNTGMGYY--KEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEALM 318 (1185)
Q Consensus 241 ~~~~~~~~~a~lvaGgT~l~~~--k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~~~~~~~~~~~~~~~ 318 (1185)
.+|++++|||+||++++ |.......+|.+++|+||+.|++..++|+|||++||++....+..
T Consensus 221 -----a~P~AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~a~~~la~----------- 284 (493)
T COG4630 221 -----AHPGATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQAYRALAG----------- 284 (493)
T ss_pred -----hCCCCEEEecCcchhhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccHHHHHHHHHh-----------
Confidence 57999999999999994 444567789999999999999999999999999999999988765
Q ss_pred hHHHHHHHHHhhhchhhhcccccCCcccccccCCCCCchHHHHHhcCcEEEEEeCCeeEEEechhhcc---CCCCCCCce
Q 001024 319 VFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLE---RPPLDSRSI 395 (1185)
Q Consensus 319 ~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p~~~~sD~~~~LlAldA~v~l~s~~g~R~vpl~dF~~---~~~l~~~Ei 395 (1185)
.+|.|.+...+|||.||||+|||||||+|+||+ .|.+|+|+||||+|+|.+++|.|++||++||. +.+++|||+
T Consensus 285 ~~P~l~~L~~r~gg~qvRN~gTlGGNIangSPI---GDtPPaLIALgA~ltLr~g~~~RtlPLe~~Fi~Y~kqdr~pGEf 361 (493)
T COG4630 285 RYPALGELWDRFGGEQVRNMGTLGGNIANGSPI---GDTPPALIALGATLTLRSGDGRRTLPLEDYFIAYGKQDRQPGEF 361 (493)
T ss_pred hCchHHHHHHHhcchhhhccccccccccCCCcC---CCCCchhhhcCcEEEEEecCCcccccHHHHHHHhhhhccCcchh
Confidence 499999999999999999999999999999999 89999999999999999999999999999996 458999999
Q ss_pred EEEEEecCCCccCCccccCCcceeeeeEeccCCCCCCcccceeeeEEEEEcCCcCCCCceeeeeEEEEcccCCCCcccHH
Q 001024 396 LLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHAIRAR 475 (1185)
Q Consensus 396 I~~I~iP~~~~~~~~~~~~~~~~~~~~~k~~~Rr~~~d~a~v~~A~~~~~~~~~~~~~~~i~~~ria~Ggv~~~~p~ra~ 475 (1185)
|.+|+||.+.+ ...|.+||++|| ++.||+.|.+||.++++ +++|.++||+||||+.+ |.|+.
T Consensus 362 Ve~v~vP~~~~----------~~rfa~yKisKR-rdeDISAv~~Af~l~Ld------g~~V~~arIa~GGmAaT-PkRA~ 423 (493)
T COG4630 362 VEAVRVPLPAP----------SERFAAYKISKR-RDEDISAVCGAFALDLD------GGRVADARIAFGGMAAT-PKRAS 423 (493)
T ss_pred hhheecCCCCc----------chhhhhhhhhhh-ccchHHHHHhHheeeec------CCeeeeeeeecCccccC-ccchH
Confidence 99999999876 467899999999 68999999999999996 56999999999999999 99999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHcccCCcCCCC-CcHHHHHHHHHHHHHHHHHHHHhhh
Q 001024 476 RVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGSLTEMK 533 (1185)
Q Consensus 476 ~~E~~L~Gk~~~~~~l~~a~~~l~~e~~p~~~~-~sa~YR~~la~~l~~r~l~~~~~~~ 533 (1185)
++|+.|.||+|++++++.|++++..+++|.+|. +|++||..+++|+++|||++.....
T Consensus 424 ~~EaAL~Gk~wteatve~A~aAl~~D~tPltD~RAsaeYR~l~a~nlL~RfflEt~~~~ 482 (493)
T COG4630 424 EVEAALLGKPWTEATVEAAAAALAGDFTPLTDMRASAEYRALTAKNLLRRFFLETQGEA 482 (493)
T ss_pred HHHHHHcCCCccHHHHHHHHHHHhcCCCcccchhhhHHHHHHHHHHHHHHHhhhccCCc
Confidence 999999999999999999999999999999997 8999999999999999999877654
No 15
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=100.00 E-value=4.7e-100 Score=904.64 Aligned_cols=445 Identities=28% Similarity=0.455 Sum_probs=392.1
Q ss_pred CccccccHHHHHHHHhhcccccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEecC
Q 001024 2 EKSLRSQALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEG 81 (1185)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEg 81 (1185)
+..++-++|++||.-++ ++|||.||++|+||||||+|+++|+.+ ++.+++||||++|+++++|++|+||||
T Consensus 14 ~~~~~~~ll~~lR~~~~--------l~g~k~gC~~G~CGaCtv~~~~~~~~~-~~~~~~v~sCl~~~~~~~g~~i~TvEg 84 (467)
T TIGR02963 14 DVDPTRTLLDYLREDAG--------LTGTKEGCAEGDCGACTVVVGELVDGG-KLRYRSVNACIQFLPSLDGKAVVTVED 84 (467)
T ss_pred cCCCCCCHHHHHHHhcC--------CCCCCcccCCCCCCceEEEEEecCCCC-cccceEEehhhhhHHhcCCCEEEecCC
Confidence 35677889999998888 888999999999999999999998766 888999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHhccCCCCCCCCchHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHhcCccccCCCChhHHH
Q 001024 82 LGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIAD 161 (1185)
Q Consensus 82 ~~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~~ 161 (1185)
|++.++.+||||++|+++|++|||||||||||++++||+ ++|.|+ ++||+++|+|||||||||++|++
T Consensus 85 l~~~~~~l~~~q~a~~~~~~~QCG~CtpG~vm~~~~ll~-----~~~~~~-------~~~i~~~l~gnlCRCtgy~~i~~ 152 (467)
T TIGR02963 85 LRQPDGRLHPVQQAMVECHGSQCGFCTPGFVMSLYALYK-----NSPAPS-------RADIEDALQGNLCRCTGYRPILD 152 (467)
T ss_pred CCCCCCCCCHHHHHHHHcCCCcCCCCchHHHHHHHHHHh-----cCCCCC-------HHHHHHHhcCCcccCCCCHHHHH
Confidence 986456899999999999999999999999999999994 356664 99999999999999999999999
Q ss_pred HHHHhhhcccccccCCcccccCCCCcccccCCCCCCCCCCCccCCCcchhcc-cCccccccC-CcEEEecCCHHHHHHHH
Q 001024 162 ACKSFAADVDIEDLGINSFWAKGESKEVKISRLPPYKHNGELCRFPLFLKKE-NSSAMLLDV-KGSWHSPISVQELRNVL 239 (1185)
Q Consensus 162 a~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-~~~~~~~~~-~~~~~~P~sl~ea~~ll 239 (1185)
|++.++ +.. | +++|++.++. +|| +|... ....+.+.+ ..+||+|+||+||+++|
T Consensus 153 a~~~~~-~~~--------~-------------~~~~~~~~~~-~~~-~l~~~~~~~~~~~~~~~~~~~~P~sl~Ea~~ll 208 (467)
T TIGR02963 153 AAEAAF-DYP--------C-------------SDPLDADRAP-IIE-RLRALRAGETVELNFGGERFIAPTTLDDLAALK 208 (467)
T ss_pred HHHHHH-hCC--------C-------------CCcCCcchhh-hhh-HHHhcCCCcceeecCCCceEECCCCHHHHHHHH
Confidence 995443 311 1 2455555543 463 34322 223344554 78999999999999999
Q ss_pred HhhcCCCCCCcEEEeCCccccc-ccc-cCCCCeeEeCCCCCCCCceEEcCCeEEecccccHHHHHHHHHHhhhhhhhhhH
Q 001024 240 ESVEGSNQISSKLVAGNTGMGY-YKE-VEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKEFHSEAL 317 (1185)
Q Consensus 240 ~~~~~~~~~~a~lvaGgT~l~~-~k~-~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~~~~~~~~~~~~~~ 317 (1185)
++ +++++++||||||++ ++. ...++++|||++|+||++|+.++++|+|||+|||+++++.+.
T Consensus 209 ~~-----~~~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el~~~l~----------- 272 (467)
T TIGR02963 209 AA-----HPDARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDAYAALA----------- 272 (467)
T ss_pred hh-----CCCCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHHHHHHH-----------
Confidence 94 578999999999988 544 357899999999999999999999999999999999986544
Q ss_pred hhHHHHHHHHHhhhchhhhcccccCCcccccccCCCCCchHHHHHhcCcEEEEEeCCeeEEEechhhccC---CCCCCCc
Q 001024 318 MVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLER---PPLDSRS 394 (1185)
Q Consensus 318 ~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p~~~~sD~~~~LlAldA~v~l~s~~g~R~vpl~dF~~~---~~l~~~E 394 (1185)
+.+|.|.+++++|||+||||+|||||||++++|. ||++|+|+||||+|+|.+.+|+|+||++|||.+ +.|.++|
T Consensus 273 ~~~p~L~~a~~~ias~qIRN~aTiGGNI~~asP~---sD~~p~LlALdA~v~l~~~~G~R~vpl~dF~~g~~kt~L~~~E 349 (467)
T TIGR02963 273 KRYPELGELLRRFASLQIRNAGTLGGNIANGSPI---GDSPPALIALGARLTLRKGEGRRTLPLEDFFIDYGKTDRQPGE 349 (467)
T ss_pred HHhHHHHHHHHHhCCHHHcCceecccccccCCCc---hHHHHHHHHcCCEEEEEcCCCcEEEeHHHhhcccccccCCCCc
Confidence 3589999999999999999999999999999998 999999999999999999999999999999975 4899999
Q ss_pred eEEEEEecCCCccCCccccCCcceeeeeEeccCCCCCCcccceeeeEEEEEcCCcCCCCceeeeeEEEEcccCCCCcccH
Q 001024 395 ILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHAIRA 474 (1185)
Q Consensus 395 iI~~I~iP~~~~~~~~~~~~~~~~~~~~~k~~~Rr~~~d~a~v~~A~~~~~~~~~~~~~~~i~~~ria~Ggv~~~~p~ra 474 (1185)
||++|+||.+.. +..+.+||+++| +++|||+||+|++++++ +++|+++||+||||+++ |+|+
T Consensus 350 iI~~I~iP~~~~----------~~~~~~~K~~~R-~~~dia~V~~A~~v~~~------~~~i~~~ria~Ggva~~-p~r~ 411 (467)
T TIGR02963 350 FVEALHVPRPTP----------GERFRAYKISKR-FDDDISAVCAAFNLELD------GGVVAEIRIAFGGMAAT-PKRA 411 (467)
T ss_pred eEEEEEecCCCC----------CCceEEEEeccc-ccccceeeEEEEEEEEc------CCeEeEEEEEEecCCCC-ceeh
Confidence 999999997654 345678999988 78999999999999985 46899999999999999 9999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHcccCCcCCCC-CcHHHHHHHHHHHHHHHHHH
Q 001024 475 RRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGS 528 (1185)
Q Consensus 475 ~~~E~~L~Gk~~~~~~l~~a~~~l~~e~~p~~~~-~sa~YR~~la~~l~~r~l~~ 528 (1185)
.++|++|.|++|+++++++|++++.+++.|.+|. ++++||++|+.+|++|++.+
T Consensus 412 ~~~E~~L~G~~~~~~~l~~a~~~l~~~~~p~~d~r~sa~YR~~la~~l~~r~~~~ 466 (467)
T TIGR02963 412 AATEAALLGKPWNEATVEAAMAALAGDFTPLSDMRASAEYRLLTAKNLLRRFFLE 466 (467)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998886 89999999999999999875
No 16
>COG1529 CoxL Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]
Probab=100.00 E-value=1.1e-78 Score=759.75 Aligned_cols=558 Identities=25% Similarity=0.326 Sum_probs=477.3
Q ss_pred CCCCCCcccccchhhhccccccccccCCCCCCcEEEEEEecCCCCeEEeeccCccCCCCCCeEEEEEcCCCCCCCCCCCC
Q 001024 584 YYPVGEPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNIGS 663 (1185)
Q Consensus 584 ~~~iG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~pGVv~Vvt~~Dip~~g~n~~~ 663 (1185)
...+|+++.|.|+..||||+++|++|+. .+||+|++|||||++|++|++||.++|+++|||++|+|++|+|. ..+..
T Consensus 3 ~~~~gr~~~R~~~~~~vtG~~~y~~d~~-~~~~~~~~~vrs~~a~a~i~~id~~ea~~~~gv~av~ta~~l~~-~~~~~- 79 (731)
T COG1529 3 AEIIGRSVLRADGLGKVTGKGRYADDIV-APGMLYAAFVRSPYAHARIVSIDVSEAQGLPGVLAVITAEELPA-WSPVR- 79 (731)
T ss_pred cccCCCCcccccchhheeeeeheehhhc-CCCCceEEEEeccCCceEEEEechHHHhhCCCeEEEechhhCcc-ccccc-
Confidence 3579999999999999999999999997 68999999999999999999999999999999999999999983 11110
Q ss_pred ccccCCcccccCCceeecCCeEEEEEECCHHHHHHhcccceEEEecCCCCCccCCHHHHhhcCCCcccCC-cc-ccCCCC
Q 001024 664 KTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVDRSSLFEVPS-FL-YPKPVG 741 (1185)
Q Consensus 664 ~~~~~~~~~~a~~~V~y~GqpVa~VVAes~~~A~~Aa~~V~Vey~~e~l~p~v~~~e~Al~~~~~~~~~~-~~-~~~~~G 741 (1185)
.......++|+.++|+|+||||++|+|+|+++|++|+++|+|+| +++ |+++++++|+.++.....+. |+ .....|
T Consensus 80 ~~~~p~~~~l~~~~v~~~G~~vA~vva~d~~~A~~aa~~v~V~y--e~l-~~~v~~~~a~~~~~~~ih~~~n~~~~~~~g 156 (731)
T COG1529 80 VELAPADEVLARGKVRYTGEPVAAVVAEDEYQARAAAELVLVEY--EAL-PPVVDPEEALAEDAPVIHDELNIARDATFG 156 (731)
T ss_pred cccCCcchhhccCceEEeCCeEEEEEeCCHHHHHHHHhhceeee--ccC-CCcCCHHHHhcCCCcccccccccccccccc
Confidence 00111112788999999999999999999999999999999999 888 89999999999876422111 22 245667
Q ss_pred ChhcccccCCeeEEEEEEEeccccCCCcCCCceEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCccEEEEEcccCCC
Q 001024 742 DISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITRRVGGA 821 (1185)
Q Consensus 742 dv~~af~~a~~~vve~~~~~~~q~H~~mEp~~avA~~~~dg~l~V~~sTQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGg 821 (1185)
|.+ +|++|+++ ++.+|.++++.|.+|||++++++|+++++|++|++||+|+.++.+++++|++|+++|+|+.+++|||
T Consensus 157 ~~~-a~a~A~~~-v~~~~~~~~~~~~~~E~~g~~a~~~d~~~lt~~~~tQ~~~~~~~~l~~~l~~p~~~vrvi~~dvGgg 234 (731)
T COG1529 157 DDD-AFAAAAVV-VEAPYKTPRKDPNPMEPHGVVAVPDDGDKLTVWASTQIPHRLRGMLAAVLGIPPSKVRVISPDVGGG 234 (731)
T ss_pred cch-hhhcCcEE-eeeeeeccCcCccCcccccceeeEcCCCeEEEEEccCCchHHHHHHHHHhCCCHHHeEEecCCCCcc
Confidence 888 99999985 9999999999999999999999999333899999999999999999999999999999999999999
Q ss_pred CCCCCccccHHHHHHHHHHHhCCCCEEEEeChhhhhhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEeeCCCCCCCCc-c
Q 001024 822 FGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPDVSP-I 900 (1185)
Q Consensus 822 FGgK~~~~~~~~~~aAlaA~~~gRPVrl~~sReed~~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~s~-~ 900 (1185)
||+|.. .+.....++++|+++||||||+++|+|.|..+++||+...++++++++||+|+++.++++.|.|+|. +. +
T Consensus 235 fG~K~~-~~~~~~~~~~aa~~~grpVk~~~tR~e~~~~~~~~~~~~~~~~~~a~~dg~l~~~~~~~~~~~Gay~--~~~~ 311 (731)
T COG1529 235 FGSKGV-VYVEEILAALAAVVAGRPVKWIETREELFVATGHRRATLIDVKLGADKDGRLLAIKGTVAADTGAYN--GPTV 311 (731)
T ss_pred cCCccc-ceeHHHHHHHHHHhcCCCeEEecchHHhhhccCCCCCceEEeeeecCcCCcEEeeeeeEEecCCCcc--ccch
Confidence 999986 4556677789999999999999999999999899999999999999999999999999999999997 33 2
Q ss_pred hhhhccccCCCcccCcEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCcccccc
Q 001024 901 MPSNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSLNLFYE 980 (1185)
Q Consensus 901 ~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lG~DP~e~R~~Nl~~~~~~~~~~~ 980 (1185)
.......+.++|+|+|+++..+.++||++|+++|||+|.++++|++|++||++|++|||||+|||++|++..|...
T Consensus 312 ~~~~~~~~~g~Y~i~~~~~~~~~v~tn~~p~~~~Rg~g~~~~~~a~E~~~d~lA~~Lgidp~eiR~~n~~~~g~~~---- 387 (731)
T COG1529 312 PAAAAGLARGPYKIEAVYIEPYLVHTNMPPNGAYRGAGRPEGTFALERAVDELAEELGIDPVEIRLRNLIRGGPFG---- 387 (731)
T ss_pred hHHHHHhcCCceecccceeeeEEEEcCCCCCcccccCCCchhHHHHHHHHHHHHHHhCCCHHHHhhhhccccCCCC----
Confidence 2334445678999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred cCCCccccC-CHHHHHHHHHHhCCchhHHHHHHHHHhcCCcceeeeeeeceeecccccc-cceEEEEeeCCcEEEEECCc
Q 001024 981 SSAGEYAEY-TLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVTLRS-TPGKVSILSDGSVVVEVGGI 1058 (1185)
Q Consensus 981 ~~~g~~~~~-~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~~~rGia~~~~~~~~~~~~-~~a~V~v~~DGsV~V~~g~~ 1058 (1185)
.+.+++. ++.+++++++++++|.+|.....+-+..+ ..+|++++...+.....+ ..+.|++++||++.|.+|..
T Consensus 388 --~~~~~~~~~~~~~~~~~ak~~~~~~~~~k~~~~re~~--~~~G~g~a~~~~~~~~~~~~~a~v~~~~~g~v~v~~g~~ 463 (731)
T COG1529 388 --LGRRYDSGDYLEELDEAAKRFGWSERPVKPIWTREGD--LRRGVGRAMYTEPSGAGPGEGARVRLEADGTVTVRTGAT 463 (731)
T ss_pred --CcccccCccHHHHHHHHHHhcCcccccCChhhhhcCC--eeeeeEEEEEEEeccCCCCCcEEEEEcCCCcEEEEECCc
Confidence 2223333 89999999999999986543333323322 346777776677766655 67999999999999999999
Q ss_pred CCCCcchhHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCcccccCccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001024 1059 EMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASCQVVRDCCNILVERLTLLRERL 1138 (1185)
Q Consensus 1059 e~GqG~~T~~aQIaA~~Lgi~~~~~~~~p~e~V~v~~~dT~~~p~~~~t~gS~~t~~~g~Av~~Ac~~L~~rL~~~aa~~ 1138 (1185)
++|||+.|.++|++|+.||| |.++|+|..+||+..+.+++|+|||++.+.++|+++||++|++|+...++.+
T Consensus 464 ~~G~G~~t~~~q~~ae~lgi--------p~~~V~v~~gDt~~~~~~~~s~GS~~~~~~~~A~~~a~~~l~~k~~~~aa~~ 535 (731)
T COG1529 464 DIGQGTDTVLAQIAAEELGI--------PPDDVEVVHGDTDVPVGGWGSVGSRGTAVAGSAVIDAAAKLAEKDPVAAARM 535 (731)
T ss_pred cCCCcHHHHHHHHHHHHhCC--------CHHHEEEEecCCCCCCCCCCCcCcccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999 9999999999999999999999999999999999999999999998888877
Q ss_pred hCCC-------------C------CCCHHHHHHHHHhCCCCeEEEEEecCC
Q 001024 1139 QGQM-------------G------NVEWETLIQQVHICSSEALSTEFILFN 1170 (1185)
Q Consensus 1139 ~~~~-------------~------~~~~~~~v~~a~~~~v~l~a~~~~~~~ 1170 (1185)
++.+ + ..+|.+++..+ ..-.+...++|.+.
T Consensus 536 l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~a~~~--~~~~~~~~~~~~~~ 584 (731)
T COG1529 536 LGADAEDVVLEDGAFKVGGGDRRSAVSLKEVAGKG--LAPGLAVAASFGSD 584 (731)
T ss_pred hCCChhHeeeccCeeeeccCCccceeeHHHhhhcc--ccCccccccccccc
Confidence 6311 0 14677777655 33455566666654
No 17
>PF02738 Ald_Xan_dh_C2: Molybdopterin-binding domain of aldehyde dehydrogenase; InterPro: IPR008274 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3NVZ_C 3NVY_C 1FO4_B 3NRZ_L 3AM9_A 3B9J_C 3AX7_B 3NVW_L 3BDJ_A 3ETR_N ....
Probab=100.00 E-value=6e-79 Score=747.88 Aligned_cols=419 Identities=32% Similarity=0.399 Sum_probs=345.1
Q ss_pred cCCCCChhcccccCCeeEEEEEEEeccccCCCcCCCceEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCCCccEEEEEc
Q 001024 737 PKPVGDISKGMNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIPEHNVRVITR 816 (1185)
Q Consensus 737 ~~~~Gdv~~af~~a~~~vve~~~~~~~q~H~~mEp~~avA~~~~dg~l~V~~sTQ~p~~~r~~vA~~Lglp~~kV~V~~~ 816 (1185)
..+.||++++|++|+++ ||++|++|+|+|++|||++|+|+|+++|+|+||++||+|+.+|..||++||||++||||+.+
T Consensus 17 ~~~~GDve~af~~a~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~g~l~v~~~tQ~p~~~r~~va~~lglp~~~V~V~~~ 95 (547)
T PF02738_consen 17 HIERGDVEAAFAEADHV-VEAEYRTPRQAHAPMEPHGAVAWWDEDGRLTVWSSTQWPFHVRRAVAEALGLPPEKVRVISP 95 (547)
T ss_dssp EEEESSHHHHHHHTSEE-EEEEEEE-BB----SS-SEEEEEEETTTEEEEEES-SSHHHHHHHHHHHHTS-GGGEEEEES
T ss_pred ccccCCHHHHHhhCCEE-EEEEEEECCccccCCCCCeEEEEEccCCCEEEEECCcCHhHHHHHHhhhhcCChhHEEEeee
Confidence 47899999999999995 99999999999999999999999997789999999999999999999999999999999999
Q ss_pred ccCCCCCCCCccccHHHHHHHHHHHhCCCCEEEEeChhhhhhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEeeCCCCCC
Q 001024 817 RVGGAFGGKAIKAMPVATACALAAYKLCRPVRIYVKRKTDMIMVGGRHPMKITYSVGFKSNGKITALQLNILIDAGLSPD 896 (1185)
Q Consensus 817 ~vGGgFGgK~~~~~~~~~~aAlaA~~~gRPVrl~~sReed~~~~~~R~~~~~~~k~g~~~dG~i~a~~~~~~~d~Ga~~~ 896 (1185)
++|||||.|. .....++.||++|+++||||||+|||+|+|+++.+||++.+++|+|+++||+|+|++++++.|+|+|.+
T Consensus 96 ~~GGgFG~~~-~~~~~~~~aa~~a~~~grPVk~~~tR~e~~~~~~~r~~~~~~~~~g~~~dG~i~a~~~~~~~d~Ga~~~ 174 (547)
T PF02738_consen 96 YVGGGFGKKK-QDSPIAVLAALAAKKTGRPVKLVWTREEDFRAGPKRPPTRIRVRAGADKDGKITALDHDIYADGGAYAS 174 (547)
T ss_dssp B-S--TTTTS-STHHHHHHHHHHHHHHSSEEEEE--HHHHHHHS-BB-EEEEEEEEEE-TTS-EEEEEEEEEEEEESS-T
T ss_pred ecCCCCCCcc-ccchHHHHHHHHHhccCceEEEEechHHhcCCCCCccHHHhhhhheECCCCCEEEeeeeeeccCCcccc
Confidence 9999999333 356778999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCc-chhhhccccCCCcccCcEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCc
Q 001024 897 VSP-IMPSNMIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRNINLHTHKSL 975 (1185)
Q Consensus 897 ~s~-~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lG~DP~e~R~~Nl~~~~~~ 975 (1185)
++. +......+..++|+|||++++++.|+||++|.+||||||.+|+.|++|++|||+|+++||||+|||++|+.+.+.
T Consensus 175 ~~~~~~~~~~~~~~~~Y~ipn~~~~~~~v~Tn~~~~g~~Rg~G~~q~~fa~E~~~DelA~~lg~DP~e~R~~N~~~~~~- 253 (547)
T PF02738_consen 175 FSPAVAPRAGAGADGPYRIPNVRIDARAVYTNTPPAGAFRGFGAPQAAFALESFMDELAEKLGMDPLEFRLKNLIDPGD- 253 (547)
T ss_dssp THHHHHHHHHHTTTTTB--SEEEEEEEEEE-SSSSBE-STTTTHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHB-GTTE-
T ss_pred ccccchhhhhcccCCCcccccEEEEEEeccCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHhCcChHHHHHhccccccc-
Confidence 775 444555666899999999999999999999999999999999999999999999999999999999999997654
Q ss_pred ccccccCCCccccC-CHHH-HHHHHHHhCCchhHHHHHHHHHhcCCcceeeeeeeceeeccccc-----ccceEEEEeeC
Q 001024 976 NLFYESSAGEYAEY-TLPL-IWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEVTLR-----STPGKVSILSD 1048 (1185)
Q Consensus 976 ~~~~~~~~g~~~~~-~~~~-~l~~~~~~~~~~~r~~~~~~~n~~~~~~~rGia~~~~~~~~~~~-----~~~a~V~v~~D 1048 (1185)
.++.|..++. ++.+ ||+.+++.++|.+|.+..+.++..+.|++||+|+++..++.++. ...+.|+|++|
T Consensus 254 ----~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gig~~~~~~~~~~~~~~~~~~~a~v~l~~D 329 (547)
T PF02738_consen 254 ----RTPTGQPYDSGDYPEDCLEKAAEHSGWRRRQKEVREFGSGNGWRGRGIGLGCAMYGSGTGGGSGDQSSARVRLNPD 329 (547)
T ss_dssp ----B-TTS-BETS--HHHHHHHHHHHHHCHHHHHHHHHHCCHEESSEEEEEEEEEEEEEESTTSGGGSEEEEEEEE-TT
T ss_pred ----ccccCcccccCcHHHHHHHHHHhhhchhhhhhHHhhccccccccccccCCCccccccccccccccCCcEEEEEEeC
Confidence 3345555444 7777 99999999999999988888888889999999999887776554 25799999999
Q ss_pred CcEEEEECCcCCCCcchhHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCcccccCccCccchhhHHHHHHHHHHHHHHH
Q 001024 1049 GSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLSVIQGGFTAGSTTSEASCQVVRDCCNILV 1128 (1185)
Q Consensus 1049 GsV~V~~g~~e~GqG~~T~~aQIaA~~Lgi~~~~~~~~p~e~V~v~~~dT~~~p~~~~t~gS~~t~~~g~Av~~Ac~~L~ 1128 (1185)
|+|+|.+|..|||||++|+++||+||+||+ |+++|+|..+||+.+|++++|+|||++.+.|.|+++||++||
T Consensus 330 G~v~v~~~~~e~GqG~~T~~~qiaAe~Lgi--------~~~~V~v~~~dT~~~p~~~~t~gSr~t~~~g~Av~~Aa~~lr 401 (547)
T PF02738_consen 330 GSVTVYTGGVEMGQGSRTALAQIAAEELGI--------PPEDVRVVSGDTDTTPYDGGTGGSRSTYMSGNAVRKAAEDLR 401 (547)
T ss_dssp S-EEEEES--BSSSSHHHHHHHHHHHHHTS---------GGGEEEEECBTTTS-SB--S-TTTHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEecccCCcchhhhHHHHHHHHhCC--------ChhhEEEEeCCCcCCCCCCCCccchhhHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCC-CCCCHHHH--HHHHHhCCCCeEEEEEecCC
Q 001024 1129 ERLTLLRERLQGQM-GNVEWETL--IQQVHICSSEALSTEFILFN 1170 (1185)
Q Consensus 1129 ~rL~~~aa~~~~~~-~~~~~~~~--v~~a~~~~v~l~a~~~~~~~ 1170 (1185)
+||+++|+++++.. .++.|++- ...++...+.+.+..++..+
T Consensus 402 ~~l~~~Aa~~~~~~~~~l~~~~g~~~~~~~~~~i~~~~~~~~~~~ 446 (547)
T PF02738_consen 402 EKLLEIAAEILGVDPEDLELEDGRVISPAKGVSISEAAIAAYANP 446 (547)
T ss_dssp HHHHHHHHHHTTSSGGGEECHCHETHHHHHHEEHHHEEEHHHCTT
T ss_pred HHHHHHHHHhcccccchhhhhhhcccccccccccccccccccccc
Confidence 99999999998633 35777776 66666777777777666543
No 18
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=100.00 E-value=1.1e-52 Score=474.38 Aligned_cols=275 Identities=23% Similarity=0.278 Sum_probs=248.9
Q ss_pred EEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCccccc-ccc-cCCCCeeEeCCCCCCCCceEEc-CCeEEecccccHHHH
Q 001024 225 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKE-VEHYDKYIDIRYIPELSVIRRD-QTGIEIGATVTISKA 301 (1185)
Q Consensus 225 ~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~-~k~-~~~~~~lIdl~~I~EL~~I~~~-~~~l~IGA~vTl~~l 301 (1185)
+|++|+|++||+++|++ +++++++||||||++ ++. ...|+++|||++|+||+.|+.+ +++|+|||+|||++|
T Consensus 6 ~~~~P~sl~Ea~~ll~~-----~~~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l 80 (291)
T PRK09971 6 EYHEAATLEEAIELLAD-----NPQAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQI 80 (291)
T ss_pred ceeCCCCHHHHHHHHHh-----CCCCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHH
Confidence 89999999999999994 478999999999988 555 3678999999999999999965 578999999999999
Q ss_pred HHHHHHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCcccccccCCCCCchHHHHHhcCcEEEEEeCCeeEEEec
Q 001024 302 IEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLML 381 (1185)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p~~~~sD~~~~LlAldA~v~l~s~~g~R~vpl 381 (1185)
+++... .+.+|.|.+++++||++||||+||||||||+++|. ||++|+|+||||+|+|.+.+|+|+||+
T Consensus 81 ~~~~~i---------~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~p~---sD~~~~Llal~A~v~i~~~~g~R~vp~ 148 (291)
T PRK09971 81 IEDPII---------QKHLPALAEAAVSIGGPQIRNVATIGGNICNGATS---ADSAPPLFALDAKLEIHSPNGVRFVPI 148 (291)
T ss_pred hcChHH---------HHHhHHHHHHHHHhCCHHHhcceecccccccCCcc---hhHHHHHHHcCCEEEEEcCCCcEEEEH
Confidence 985432 35689999999999999999999999999999998 999999999999999999999999999
Q ss_pred hhhccC---CCCCCCceEEEEEecCCCccCCccccCCcceeeeeEeccCCCCCCcccceeeeEEEEEcCCcCCCCceeee
Q 001024 382 EEFLER---PPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNN 458 (1185)
Q Consensus 382 ~dF~~~---~~l~~~EiI~~I~iP~~~~~~~~~~~~~~~~~~~~~k~~~Rr~~~d~a~v~~A~~~~~~~~~~~~~~~i~~ 458 (1185)
+|||.+ +.|.++|||++|+||.+... +..+.+||+.+| +++|||+||+|+.++++ +++|++
T Consensus 149 ~df~~g~~~t~l~~~Eil~~I~iP~~~~~---------~~~~~~~K~~~R-~~~~~a~v~~a~~~~~~------~g~i~~ 212 (291)
T PRK09971 149 NGFYTGPGKVSLEHDEILVAFIIPPEPYE---------HAGGAYIKYAMR-DAMDIATIGCAVLCRLD------NGNFED 212 (291)
T ss_pred HHhcCCccccccCCCceEEEEEeCCCCCC---------CCceEEEEEccc-chhhHhHheeEEEEEEc------CCEEEE
Confidence 999985 48999999999999975431 234556788888 78999999999999984 578999
Q ss_pred eEEEEcccCCCCcccHHHHHHHHcCCCCCHHHHHHHHHHHcccCCcCCCC-CcHHHHHHHHHHHHHHHHHHHHhhh
Q 001024 459 CRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGSLTEMK 533 (1185)
Q Consensus 459 ~ria~Ggv~~~~p~ra~~~E~~L~Gk~~~~~~l~~a~~~l~~e~~p~~~~-~sa~YR~~la~~l~~r~l~~~~~~~ 533 (1185)
+||+|||++++ |+|+.++|++|.|++|++++++++.+++.+++.|.+|. +|++||++|+.+|++|++.++..+.
T Consensus 213 ~ria~G~v~~~-p~r~~~~E~~L~G~~~~~~~~~~a~~~~~~~~~p~~d~~~s~~YR~~l~~~l~~r~l~~~~~~~ 287 (291)
T PRK09971 213 LRLAFGVAAPT-PIRCQHAEQTAKGAPLNLETLEAIGELVLQDVAPRSSWRASKEFRLHLIQELTKRVIKEAVAAA 287 (291)
T ss_pred EEEEEEcccCc-eeeHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 99999999999999999999999999999999999986 8999999999999999999987653
No 19
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=100.00 E-value=5e-50 Score=452.53 Aligned_cols=274 Identities=21% Similarity=0.262 Sum_probs=241.0
Q ss_pred CcEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCccccc-ccc-cCCCCeeEeCCCCCCCCceEEcCCeEEecccccHHH
Q 001024 223 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKE-VEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISK 300 (1185)
Q Consensus 223 ~~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~-~k~-~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~ 300 (1185)
.|+|++|+|++||+++|++ .+++++++|||||++ ++. ...|+++|||++|+||++|+.++++|+|||+||+++
T Consensus 4 ~f~~~~P~sl~eA~~ll~~-----~~~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~ 78 (321)
T TIGR03195 4 DFRTLRPASLADAVAALAA-----HPAARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAA 78 (321)
T ss_pred CceEECCCCHHHHHHHHhh-----CCCCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHH
Confidence 5899999999999999994 478999999999988 554 367899999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCccccccc------------------------------
Q 001024 301 AIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR------------------------------ 350 (1185)
Q Consensus 301 l~~~~~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p------------------------------ 350 (1185)
|+++... ...+|.|.++++.|||+||||+||||||||+++|
T Consensus 79 l~~~~~i---------~~~~p~L~~a~~~ias~qIRN~aTiGGNi~~~~~c~~~~~~~~~~~~~~~c~~~~~~~c~~~~~ 149 (321)
T TIGR03195 79 LAEDALV---------RTRWPALAQAARAVAGPTHRAAATLGGNLCLDTRCIYYNQSEWWRSGNGYCLKYRGDKCHVAPK 149 (321)
T ss_pred HhhChhh---------HhHhHHHHHHHHHhCCHHHhCceecHHhhhccCCCcccccccccccccccccccCCccccccCC
Confidence 9987553 2468999999999999999999999999996543
Q ss_pred -----CCCCCchHHHHHhcCcEEEEEeCCeeEEEechhhccC-----CCCCCCceEEEEEecCCCccCCccccCCcceee
Q 001024 351 -----KHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFLER-----PPLDSRSILLSVEIPCWDLTRNVTSETNSVLLF 420 (1185)
Q Consensus 351 -----~~~~sD~~~~LlAldA~v~l~s~~g~R~vpl~dF~~~-----~~l~~~EiI~~I~iP~~~~~~~~~~~~~~~~~~ 420 (1185)
..++||++|+|+||||+|+|.+.+|+|+||++|||.+ +.|+++|||++|+||.... . .
T Consensus 150 ~~~c~a~p~sD~~~~LlAldA~v~i~~~~g~R~vpl~dF~~~~g~~~t~L~~~Eiit~I~iP~~~~-----------~-~ 217 (321)
T TIGR03195 150 SDRCYAAFSGDVAPALLVLDAEAEIVGPAGVRRVPLAELYVEDGAAHLTLEPGEVLAAVRVPPTGG-----------W-T 217 (321)
T ss_pred CccccCCCchHHHHHHHHcCCEEEEEeCCccEEEEHHHHhcccCCccccCCCCCeEEEEEecCCCC-----------C-c
Confidence 1234899999999999999999999999999999972 4789999999999996422 1 2
Q ss_pred eeEeccCCCCCCcccceeeeEEEEEcCCcCCCCceeeeeEEEEcccCCCCcccHHHHHHHHcCCCCCHHHHHHHHHHHcc
Q 001024 421 ETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRD 500 (1185)
Q Consensus 421 ~~~k~~~Rr~~~d~a~v~~A~~~~~~~~~~~~~~~i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~~~~~~l~~a~~~l~~ 500 (1185)
.+|++.++|.+.||+++++|+.++.+ +++|+++||+|||++++ |+|++++ ++|.|+.+++++++++.+++.+
T Consensus 218 ~~y~k~~~r~a~~~~~~~vav~l~~~------~~~i~~~ria~Ggva~~-p~r~~~~-e~l~G~~~~~~~~~~a~~~~~~ 289 (321)
T TIGR03195 218 SAYSKVRVRGAIDFPLAGVAVALQRD------GDRIAGLRVALTGTNSR-PLMVPGT-DALAGRPLDDAAAEEIARLVRK 289 (321)
T ss_pred cEEEEEecCccccceeEEEEEEEEeC------CCeEEEEEEEEECccCc-eeehHHH-HHhcCCCCCHHHHHHHHHHHHh
Confidence 34555555578899999999888874 56899999999999999 9999999 5589999999999999999999
Q ss_pred cCCcCCCC-CcHHHHHHHHHHHHHHHHHHHH
Q 001024 501 SVVPEDGT-SIPAYRSSLAVGFLYEFFGSLT 530 (1185)
Q Consensus 501 e~~p~~~~-~sa~YR~~la~~l~~r~l~~~~ 530 (1185)
++.|.++. ++++||++++.+|++|++.+++
T Consensus 290 ~~~p~~d~~~s~~YRr~l~~~l~~r~~~~~~ 320 (321)
T TIGR03195 290 TSQPMRTTLMGVKYRRRVLLAIARRLVDQLW 320 (321)
T ss_pred hCCCccCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999885 8999999999999999998764
No 20
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=100.00 E-value=8.7e-50 Score=445.26 Aligned_cols=258 Identities=21% Similarity=0.210 Sum_probs=231.8
Q ss_pred cCCHHHHHHHHHhhcCCCCCCcEEEeCCccccc-cccc--CCCCeeEeCCCCCCCCceEEcCCeEEecccccHHHHHHHH
Q 001024 229 PISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKEV--EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEAL 305 (1185)
Q Consensus 229 P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~-~k~~--~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~~ 305 (1185)
|+||+||+++|++ +++++++||||+|++ ++.. ..|+++|||++|+||++|+.++++|+|||+|||++|+++.
T Consensus 1 P~sl~ea~~ll~~-----~~~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~ 75 (264)
T TIGR03199 1 PAALDEAWSLLEK-----APDSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNP 75 (264)
T ss_pred CCCHHHHHHHHHh-----CCCCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhCh
Confidence 8999999999994 578999999999988 4443 4589999999999999999999999999999999999764
Q ss_pred HHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCcccccccCCCCCchHHHHHhcCcEEEEEeCCeeEEEechhhc
Q 001024 306 KEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEEFL 385 (1185)
Q Consensus 306 ~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p~~~~sD~~~~LlAldA~v~l~s~~g~R~vpl~dF~ 385 (1185)
.. .+.+|.|.++++.|||+||||+||||||||++ . ||++|+|+||||+|+|.+ +|+|+||++|||
T Consensus 76 ~i---------~~~~p~L~~a~~~ia~~qIRN~aTlGGNl~~~--~---sD~~p~Llal~A~v~i~~-~g~r~vp~~~f~ 140 (264)
T TIGR03199 76 LI---------KRALPCFVDAASAIAAPGVRNRATIGGNIASG--I---GDFIPALLVLGAELIVYQ-KELIRLPLGAWL 140 (264)
T ss_pred Hh---------HhHhHHHHHHHHHhcCHHHhcceecHHhccCc--c---cchHHHHHHcCCEEEEEe-CCEEEEEHHHhh
Confidence 32 35699999999999999999999999999998 4 899999999999999999 889999999999
Q ss_pred cCCCCCCCceEEEEEe-cCCCccCCccccCCcceeeeeEeccCCCCCCcccceeeeEEEEEcCCcCCCCceeeeeEEEEc
Q 001024 386 ERPPLDSRSILLSVEI-PCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFG 464 (1185)
Q Consensus 386 ~~~~l~~~EiI~~I~i-P~~~~~~~~~~~~~~~~~~~~~k~~~Rr~~~d~a~v~~A~~~~~~~~~~~~~~~i~~~ria~G 464 (1185)
.++.|.++|||++|.| |.+.. +..+.+||..+| .++++++||+|+.+.++ ++++|+++||+||
T Consensus 141 ~~~~l~~~Eii~~I~i~p~~~~----------~~~~~~~k~~~R-~~~~~a~v~~a~~~~~~-----~~~~i~~~ria~G 204 (264)
T TIGR03199 141 SEEDFKPTAIVTRVIIGPRAET----------GEFVFYHKVGRR-ETFTGSLVVVAGRFLLD-----GSQTIKEIRLAVG 204 (264)
T ss_pred hccCCCCCcEEEEEEEECCCCC----------CCcEEEEEEecc-chhHHHHheeeEEEEEc-----CCCeEEEEEEEee
Confidence 9889999999999999 65533 233445666666 78899999999999986 2479999999999
Q ss_pred ccCCCCcccHHHHHHHHcCCCCCHHHHHHHHHHHcccCCcCCCC-CcHHHHHHHHHHHHH
Q 001024 465 AFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLY 523 (1185)
Q Consensus 465 gv~~~~p~ra~~~E~~L~Gk~~~~~~l~~a~~~l~~e~~p~~~~-~sa~YR~~la~~l~~ 523 (1185)
|++++ |+|++++|++|.|++|++++++++.+.+.+++.|.+|. +|++||++|+.+|+.
T Consensus 205 gv~~~-p~r~~~~E~~L~G~~~~~~~~~~a~~~~~~~~~p~~d~~~s~~YR~~l~~~~~~ 263 (264)
T TIGR03199 205 GADIT-PRRLLDSEAKLMAPPWDPHLLAELYKTIIQELPFSSDPFATAAYRKKVAANVIV 263 (264)
T ss_pred cCCCc-eeeHHHHHHHhcCCCCCHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhc
Confidence 99999 99999999999999999999999999999999999886 899999999999874
No 21
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=100.00 E-value=3.2e-48 Score=427.10 Aligned_cols=274 Identities=26% Similarity=0.305 Sum_probs=247.1
Q ss_pred CcEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCccccc-ccc-cCCCCeeEeCCCCCCCCceEEcCCe-EEecccccHH
Q 001024 223 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKE-VEHYDKYIDIRYIPELSVIRRDQTG-IEIGATVTIS 299 (1185)
Q Consensus 223 ~~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~-~k~-~~~~~~lIdl~~I~EL~~I~~~~~~-l~IGA~vTl~ 299 (1185)
.|+|++|+|++||+.+|+. .+++++++|||+|.. ||. ...|.++|||++|+++..+...+++ |+|||+||++
T Consensus 3 ~f~y~rp~Sv~eA~~ll~~-----~~~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~ 77 (284)
T COG1319 3 NFEYYRPASVEEALNLLAR-----APDAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLT 77 (284)
T ss_pred ceEEECCCCHHHHHHHHHh-----CCCcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHH
Confidence 4899999999999999994 469999999999988 676 3689999999999988887777555 9999999999
Q ss_pred HHHHHHHHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCcccccccCCCCCchHHHHHhcCcEEEEEeCCeeEEE
Q 001024 300 KAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKL 379 (1185)
Q Consensus 300 ~l~~~~~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p~~~~sD~~~~LlAldA~v~l~s~~g~R~v 379 (1185)
+|.++... ...+|+|++++..+||+||||+||||||||+++|. +|++|+|+||||+|++.+..|+|++
T Consensus 78 ei~~~~~~---------~~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a~p~---aD~~~aLlaLdA~v~~~~~~g~r~i 145 (284)
T COG1319 78 EIARHPAV---------RRIPPALSEAASAIASPQVRNRATIGGNLCNADPA---ADLAPALLALDAEVEIRSPGGERTI 145 (284)
T ss_pred HHHhChhh---------hhhchHHHHHHHHhcChhhcceeeecchhccCCCc---hhhHHHHHHcCCEEEEecCCccEEE
Confidence 99988643 46799999999999999999999999999999998 9999999999999999999999999
Q ss_pred echhhccCC---CCCCCceEEEEEecCCCccCCccccCCcceeeeeEeccCCCCCCcccceeeeEEEEEcCCcCCCCcee
Q 001024 380 MLEEFLERP---PLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRV 456 (1185)
Q Consensus 380 pl~dF~~~~---~l~~~EiI~~I~iP~~~~~~~~~~~~~~~~~~~~~k~~~Rr~~~d~a~v~~A~~~~~~~~~~~~~~~i 456 (1185)
|+++||.++ .|+++||||+|.||.++. ..+..||+.+||...+++.|++|..++. ++|
T Consensus 146 ~~~~f~~~p~~t~l~~gelit~v~lP~~~~-----------~~~~~~kk~r~r~~~~~~~vsvA~~~~~--------~~v 206 (284)
T COG1319 146 PIEDFFRGPGETALEPGELITAVILPPPPA-----------ARGAYYKKVRRRASFAIALVSVAAKLRG--------DRV 206 (284)
T ss_pred EHHHhhcCccccccCCCcEEEEEEcCCCcc-----------CCccEEEEeecchhhhHHHHHHHhhhcc--------cce
Confidence 999999864 899999999999999733 2245678888878888888888886654 289
Q ss_pred eeeEEEEcccCCCCcccHHHHHHHHcCCCCCHHHHHHHHHHHcccCCcCCCC-CcHHHHHHHHHHHHHHHHHHHHhhh
Q 001024 457 NNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGSLTEMK 533 (1185)
Q Consensus 457 ~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~~~~~~l~~a~~~l~~e~~p~~~~-~sa~YR~~la~~l~~r~l~~~~~~~ 533 (1185)
+++||++||++++ |+|+.++|+.|.|+++++++++++.+...+++.|.+|. +|++||++|+++++.|++.++..+.
T Consensus 207 ~~~RvAlgg~a~~-p~R~~~~E~~L~~~~l~~~~~~~~~~~~~~~~~p~~d~r~s~~yr~~l~~~~~~ral~~a~~~~ 283 (284)
T COG1319 207 SEARVALGGVAPK-PWRLEDAEAALLGKPLSLETLEAAAEAAMQEAAPISDVRGSAEYRRKLAKVLLARALAEAQGRA 283 (284)
T ss_pred eeeeeeecccCCc-ceehHHHHHHhhCCCCChHHHHHHHHHhhcccCCcccccchHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999 99999999999999999999999999999999999986 8999999999999999999887653
No 22
>PRK09799 putative oxidoreductase; Provisional
Probab=100.00 E-value=8e-46 Score=410.43 Aligned_cols=249 Identities=21% Similarity=0.286 Sum_probs=218.1
Q ss_pred EEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCccccc-ccccCCCCeeEeCCCCCCCCceEEcCCeEEecccccHHHHHH
Q 001024 225 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIE 303 (1185)
Q Consensus 225 ~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~-~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~ 303 (1185)
+|++|+|++||+++|+++ .++++++||||+|++ ++. ..++.+|||++| ||++|+.++++|+|||+|||++|++
T Consensus 4 ~y~~P~sl~Ea~~ll~~~----~~~a~ilAGGT~L~~~~~~-~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~ 77 (258)
T PRK09799 4 QFFRPDSVEQALELKRRY----QDEAVWFAGGSKLNATPTR-TDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRD 77 (258)
T ss_pred cEeCCCCHHHHHHHHHhC----CCCCEEEecCCChHhhhCC-CCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHh
Confidence 799999999999999964 346999999999977 433 568899999999 9999999999999999999999988
Q ss_pred HHHHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCcccccccCCCCCchHHHHHhcCcEEEEEeCCeeEEEechh
Q 001024 304 ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEE 383 (1185)
Q Consensus 304 ~~~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p~~~~sD~~~~LlAldA~v~l~s~~g~R~vpl~d 383 (1185)
+.. ..+.|.++++.|||+||||+||||||||+++|. ||++|+|+||||+|+|.+. |++|++|
T Consensus 78 ~~~------------~~~~L~~a~~~vas~qIRN~aTiGGNl~~a~p~---sD~~p~LlAldA~v~l~~~---r~vpl~~ 139 (258)
T PRK09799 78 ARF------------IPAALREALGFVYSRHLRNQSTIGGEIAARQEE---SVLLPVLLALDAELVFGNG---ETLSIED 139 (258)
T ss_pred Ccc------------cHHHHHHHHHHhCCHHHhccchhHHHhhcCCcc---HHHHHHHHHcCCEEEEecC---cEEeHHH
Confidence 642 123899999999999999999999999999998 9999999999999999884 8999999
Q ss_pred hccCCCCCCCceEEEEEecCCCccCCccccCCcceeeeeEeccCCCCCCcccceeeeEEEEEcCCcCCCCceeeeeEEEE
Q 001024 384 FLERPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAF 463 (1185)
Q Consensus 384 F~~~~~l~~~EiI~~I~iP~~~~~~~~~~~~~~~~~~~~~k~~~Rr~~~d~a~v~~A~~~~~~~~~~~~~~~i~~~ria~ 463 (1185)
||.+ .++|||++|.||.+.. .+.+||.. | +.+|+|+||+|+.++++ + .+||+|
T Consensus 140 f~~g---~~~Eil~~I~iP~~~~------------~~~~~K~~-r-~~~~~a~v~~A~~~~~~------~----~~ria~ 192 (258)
T PRK09799 140 YLAC---PCDRLLTEIIIPDPYR------------TCATRKIS-R-SQAGLTVVTAAVALTDH------D----GMRIAL 192 (258)
T ss_pred hcCC---CCCcEEEEEEcCCCCC------------cceEEEec-c-cccChhhheeEEEEEEc------C----CeEEEE
Confidence 9987 4799999999996532 13345664 6 57899999999999874 2 389999
Q ss_pred cccCCCCcccHHHHHHHHcCCCCCHHHHHHHHHHHcccCCcCCCC-CcHHHHHHHHHHHHHHHHHHHHhh
Q 001024 464 GAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGSLTEM 532 (1185)
Q Consensus 464 Ggv~~~~p~ra~~~E~~L~Gk~~~~~~l~~a~~~l~~e~~p~~~~-~sa~YR~~la~~l~~r~l~~~~~~ 532 (1185)
||++++ |+|++++|+ ++++++++.++ +.+++.|.+|. +|++||++++++|+.|+|.++.+.
T Consensus 193 Ggv~~~-p~r~~~~E~----~~~~~~~~~~a---~~~~~~p~~d~~~s~~YR~~~~~~l~~r~l~~~~~~ 254 (258)
T PRK09799 193 DGVASK-PLRLHDVEK----QNLEGNALEQA---VANAIFPQEDLRGSVAYKRYIAGVLVADLYADCQQA 254 (258)
T ss_pred ECCCCc-ccchHHHhc----CCCCHHHHHHH---HHhcCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 999999998 88999988876 44788898886 899999999999999999998764
No 23
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=100.00 E-value=9.2e-47 Score=374.49 Aligned_cols=135 Identities=34% Similarity=0.572 Sum_probs=124.4
Q ss_pred CccccccHHHHHHHHhhcccccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEecC
Q 001024 2 EKSLRSQALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEG 81 (1185)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEg 81 (1185)
+.+++-++|++||.-+. ++|+|.||++|.||||||+| |+++||||++|+.+++|++|+||||
T Consensus 14 ~~~~~~~Ll~~LR~~lg--------ltg~K~gC~~G~CGACtVlv----------dg~~v~SCl~~~~~~~G~~V~TiEg 75 (148)
T TIGR03193 14 AVADNMLLVDYLRDTVG--------LTGTKQGCDGGECGACTVLV----------DGRPRLACSTLAHRVAGRKVETVEG 75 (148)
T ss_pred ecCCCCcHHHHHHHhcC--------CCCCCCCCCCCCCCCCEEEE----------CCeEeeccHhhHhhcCCCcEEEeCC
Confidence 45678889999998776 77899999999999999999 8999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHhccCCCCCCCCchHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHhcCccccCCCChhHHH
Q 001024 82 LGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIAD 161 (1185)
Q Consensus 82 ~~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~~ 161 (1185)
|++ .+.+||||++|+++|++|||||||||||++++||+ ++|+|+ ++||+++|+|||||||||++|++
T Consensus 76 l~~-~~~l~pvq~af~~~~a~QCGfCtPG~vms~~~ll~-----~~p~ps-------~~ei~~al~GnLCRCTGY~~I~~ 142 (148)
T TIGR03193 76 LAT-NGRLSRLQQAFHERLGTQCGFCTPGMIMAAEALLR-----RNPSPS-------RDEIRAALAGNLCRCTGYVKIIE 142 (148)
T ss_pred CCC-CCCCCHHHHHHHHcCCCcCCCCCccHHHHHHHHHH-----cCCCCC-------HHHHHHHHcCCccCCCCCHHHHH
Confidence 986 56899999999999999999999999999999994 467774 99999999999999999999999
Q ss_pred HHHHhh
Q 001024 162 ACKSFA 167 (1185)
Q Consensus 162 a~~~~~ 167 (1185)
|++.++
T Consensus 143 Av~~aa 148 (148)
T TIGR03193 143 SVEAAA 148 (148)
T ss_pred HHHHhC
Confidence 998753
No 24
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=100.00 E-value=4.3e-45 Score=404.05 Aligned_cols=252 Identities=21% Similarity=0.284 Sum_probs=217.1
Q ss_pred cEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEcCCeEEecccccHHHHHH
Q 001024 224 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIE 303 (1185)
Q Consensus 224 ~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~ 303 (1185)
.+|++|+|++||+++|+++ .++++++||||||.+......++++|||++| ||++|+.++++|+|||+|||++|++
T Consensus 2 ~~y~~P~sl~Ea~~ll~~~----~~~a~~lAGGTdL~~~~~~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~ 76 (257)
T TIGR03312 2 EQFFRPESTIQALELKKRH----TGVAVWFAGGSKLNATPTRTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLID 76 (257)
T ss_pred CceECCCCHHHHHHHHHhC----CCCCEEEecCcchhhhhcccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHh
Confidence 3699999999999999953 3479999999999773223567899999999 9999999999999999999999987
Q ss_pred HHHHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCcccccccCCCCCchHHHHHhcCcEEEEEeCCeeEEEechh
Q 001024 304 ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLMLEE 383 (1185)
Q Consensus 304 ~~~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p~~~~sD~~~~LlAldA~v~l~s~~g~R~vpl~d 383 (1185)
+... .+.|.++++.||++||||+||||||||+++|. +|++|+|+||||+|+|.+. |+||++|
T Consensus 77 ~~~~------------~~~L~~aa~~va~~qIRN~gTlGGNl~~a~p~---~D~~~~LlaldA~v~l~~~---r~vp~~d 138 (257)
T TIGR03312 77 NELT------------PAALKEALGFVYSRHIRNQATIGGEIAAFQSE---SLLLPVLLALKATVVLANA---SQMDIED 138 (257)
T ss_pred Ccch------------HHHHHHHHHHhCCHHHhccccHHHHhhcCCCc---hHHHHHHHHcCCEEEEecC---cEEeHHH
Confidence 6431 22799999999999999999999999999998 9999999999999999876 8999999
Q ss_pred hccCCCCCCCceEEEEEecCCCccCCccccCCcceeeeeEeccCCCCCCcccceeeeEEEEEcCCcCCCCceeeeeEEEE
Q 001024 384 FLERPPLDSRSILLSVEIPCWDLTRNVTSETNSVLLFETYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAF 463 (1185)
Q Consensus 384 F~~~~~l~~~EiI~~I~iP~~~~~~~~~~~~~~~~~~~~~k~~~Rr~~~d~a~v~~A~~~~~~~~~~~~~~~i~~~ria~ 463 (1185)
||.+ .++|||++|+||.+.. .+.++|. .| +.+|||+|++|+.++++ + ++||++
T Consensus 139 F~~g---~~~Ell~~V~iP~~~~------------~~~~~k~-~R-~~~~~a~v~~A~~~~~~------~----~~ria~ 191 (257)
T TIGR03312 139 YLAS---EQRELIVEVIIPNPNL------------MCATRNI-SR-SAAGLAVVTAAVAVDQK------G----NMRIAL 191 (257)
T ss_pred hcCC---CCCcEEEEEEcCCCCC------------CceEEEe-cC-cccchhhheeEEEEEec------C----CEEEEE
Confidence 9987 4799999999997532 1234455 56 67899999999998874 2 389999
Q ss_pred cccCCCCcccHHHHHHHHcCCCCCHHHHHHHHHHHcccCCcCCCC-CcHHHHHHHHHHHHHHHHHHHHhhh
Q 001024 464 GAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDSVVPEDGT-SIPAYRSSLAVGFLYEFFGSLTEMK 533 (1185)
Q Consensus 464 Ggv~~~~p~ra~~~E~~L~Gk~~~~~~l~~a~~~l~~e~~p~~~~-~sa~YR~~la~~l~~r~l~~~~~~~ 533 (1185)
||++++ |+|+.++|+. .++++.++++ +.+++.|.+|. +|++||++++++|++|++.++.+-.
T Consensus 192 ggv~~~-p~r~~~~E~~----~~~~~~~~~~---~~~~~~p~~D~r~sa~YRr~~~~~l~~r~l~~~~~~~ 254 (257)
T TIGR03312 192 DGVSPV-PVRLRDVEAQ----DLKGEALEQA---VADAIHPVADLCGSVAYKRYIAGVVVADLLAECQQLA 254 (257)
T ss_pred EccCCc-eeehHHHhhC----cCCHHHHHHH---HHhcCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999 9999999985 6777877654 56789999996 8999999999999999999887643
No 25
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=100.00 E-value=3.3e-46 Score=374.16 Aligned_cols=135 Identities=37% Similarity=0.598 Sum_probs=122.3
Q ss_pred CccccccHHHHHHHHhhcccccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEecC
Q 001024 2 EKSLRSQALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEG 81 (1185)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEg 81 (1185)
+.+++-+||++||.. + ++|||.||++|.||||||+| |+++||||++|+.+++|++|+||||
T Consensus 21 ~~~~~~~Ll~~LR~~-g--------ltgtK~GC~~G~CGACtVlv----------dg~~v~SCl~~a~~~~G~~V~TiEG 81 (159)
T PRK09908 21 HAAPGTPLSELLREQ-G--------LLSVKQGCCVGECGACTVLV----------DGTAIDSCLYLAAWAEGKEIRTLEG 81 (159)
T ss_pred ecCCCCcHHHHHHHc-C--------CCCCCCCcCCCCCCCcEEEE----------CCcEeehhHhhHHHhCCCEEEeecC
Confidence 456788999999973 6 77899999999999999999 8999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHhccCCCCCCCCchHHHHHHHHHHhccccCCCC-CCCCCCCCCHHHHHHHhcCccccCCCChhHH
Q 001024 82 LGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPE-PPPGLSKLTISEAEKAIAGNLCRCTGYRPIA 160 (1185)
Q Consensus 82 ~~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~-~~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~ 160 (1185)
|++ .+.+||||+||+++|++|||||||||||++++||++ ++. | +|++||+++|+|||||||||++|+
T Consensus 82 l~~-~~~l~pvQ~Af~~~~a~QCGyCtPG~ims~~aLl~~-----~~~~~------~s~~eI~~al~GNlCRCTGY~~I~ 149 (159)
T PRK09908 82 EAK-GGKLSHVQQAYAKSGAVQCGFCTPGLIMATTAMLAK-----PREKP------LTITEIRRGLAGNLCRCTGYQMIV 149 (159)
T ss_pred CCC-CCCCCHHHHHHHHcCCCcCCCCCccHHHHHHHHHHc-----CCCCC------CCHHHHHHHHcCCccCCCCCHHHH
Confidence 986 568999999999999999999999999999999954 332 2 259999999999999999999999
Q ss_pred HHHHHhh
Q 001024 161 DACKSFA 167 (1185)
Q Consensus 161 ~a~~~~~ 167 (1185)
+|++.+-
T Consensus 150 ~Av~~~~ 156 (159)
T PRK09908 150 NTVLDCE 156 (159)
T ss_pred HHHHHHh
Confidence 9998753
No 26
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=100.00 E-value=2.4e-45 Score=367.91 Aligned_cols=135 Identities=33% Similarity=0.605 Sum_probs=123.7
Q ss_pred CccccccHHHHHHHHhhcccccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEecC
Q 001024 2 EKSLRSQALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEG 81 (1185)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEg 81 (1185)
+..++-+++++||.-++ ++|||.||++|.||||||+| |+++|+||++|+.+++|++|+||||
T Consensus 16 ~~~~~~~Ll~~LR~~~~--------ltgtK~gC~~G~CGACtVlv----------dG~~v~SCl~~~~~~~G~~v~TiEg 77 (151)
T TIGR03198 16 AAVPTTRLSDLLRKELQ--------LTGTKVSCGIGRCGACSVLI----------DGKLANACLTMAYQADGHEITTIEG 77 (151)
T ss_pred ecCCCcHHHHHHHhccC--------CCCCCCCCCCCcCCccEEEE----------CCcEEechHHHHHHhcCCEEEecCC
Confidence 34567788888888777 78899999999999999999 8899999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHhccCCCCCCCCchHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHhcCccccCCCChhHHH
Q 001024 82 LGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIAD 161 (1185)
Q Consensus 82 ~~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~~ 161 (1185)
|+. +.+||||+||+++|++|||||||||||++++||+ ++|.|+ ++||+++|+|||||||||++|++
T Consensus 78 l~~--~~l~pvQ~af~~~~a~QCGfCtpG~im~~~~ll~-----~~p~p~-------~~ei~~al~gnlCRCtgY~~I~~ 143 (151)
T TIGR03198 78 IAE--NELDPCQTAFLEEGGFQCGYCTPGMVVALKALFR-----ETPQPS-------DEDMEEGLSGNLCRCTGYGGIIR 143 (151)
T ss_pred cCC--CCCCHHHHHHHHcCCCcCCCCCccHHHHHHHHHH-----cCCCCC-------HHHHHHHHcCCCcCCCCCHHHHH
Confidence 973 5799999999999999999999999999999994 457774 99999999999999999999999
Q ss_pred HHHHhhh
Q 001024 162 ACKSFAA 168 (1185)
Q Consensus 162 a~~~~~~ 168 (1185)
|++.++.
T Consensus 144 Av~~~~~ 150 (151)
T TIGR03198 144 SACRIRR 150 (151)
T ss_pred HHHHHhc
Confidence 9998763
No 27
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=100.00 E-value=3.1e-45 Score=362.06 Aligned_cols=138 Identities=40% Similarity=0.683 Sum_probs=129.6
Q ss_pred CCccccccHHHHHHHHhhcccccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEec
Q 001024 1 MEKSLRSQALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSE 80 (1185)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvE 80 (1185)
++..++.|++|+||..+. ++|||.||+.|.||||||+| ||++|+||++|++.++|++|+|||
T Consensus 15 ~~~~p~~~Ll~~LRd~l~--------ltgtk~GC~~g~CGACtVlv----------DG~~v~SCl~~a~~~~G~~ItTiE 76 (156)
T COG2080 15 LDVDPRTPLLDVLRDELG--------LTGTKKGCGHGQCGACTVLV----------DGEAVNSCLTLAVQAEGAEITTIE 76 (156)
T ss_pred EEeCCCChHHHHHHHhcC--------CCCcCCCCCCccCCceEEEE----------CCeEehHHHHHHHHhCCCeEEEee
Confidence 367899999999999999 89999999999999999999 999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHhccCCCCCCCCchHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHhcCccccCCCChhHH
Q 001024 81 GLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIA 160 (1185)
Q Consensus 81 g~~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~ 160 (1185)
||+.....|||||+||+++++.|||||||||||++++||+ +++.|+ ++||+++|+||+||||||..|+
T Consensus 77 Gl~~~~~~l~~vQ~Af~e~~~~QCGyCtpG~Imsa~~lL~-----~~~~ps-------~~eI~~~lsGnlCRCt~Y~~I~ 144 (156)
T COG2080 77 GLAKKDGGLHPVQQAFLEHDAFQCGYCTPGQIMSATALLD-----RNPAPT-------DEEIREALSGNLCRCTGYQNIV 144 (156)
T ss_pred cccCCCCCcCHHHHHHHHcCCCcCCCCcHHHHHHHHHHHH-----hCCCCC-------HHHHHHHHhcCccccCCHHHHH
Confidence 9996567789999999999999999999999999999995 467774 9999999999999999999999
Q ss_pred HHHHHhhh
Q 001024 161 DACKSFAA 168 (1185)
Q Consensus 161 ~a~~~~~~ 168 (1185)
+|++.+++
T Consensus 145 ~Ai~~aa~ 152 (156)
T COG2080 145 AAILDAAE 152 (156)
T ss_pred HHHHHHHH
Confidence 99998874
No 28
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=100.00 E-value=1.4e-43 Score=371.72 Aligned_cols=148 Identities=33% Similarity=0.600 Sum_probs=126.4
Q ss_pred CccccccHHHHHHHHhhcccccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEecC
Q 001024 2 EKSLRSQALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEG 81 (1185)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEg 81 (1185)
+.+++-+||++||.-+. ++|+|.||++|.||||||+| |+++||||++++.+++|++|+||||
T Consensus 64 ~v~~~~tLLd~LR~~l~--------ltGtK~GC~~G~CGACTVlV----------dG~~v~SCl~la~~~~G~~ItTiEG 125 (217)
T PRK11433 64 EVDTRTTLLDALREHLH--------LTGTKKGCDHGQCGACTVLV----------NGRRLNACLTLAVMHQGAEITTIEG 125 (217)
T ss_pred ecCCCCcHHHHHHHhcC--------CCCCCCCCCCCCcCceEEEE----------CCEEeeeeeeehhhcCCCEEEEeCC
Confidence 44567889999998666 78899999999999999999 8999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHhccCCCCCCCCchHHHHHHHHHHhccccCCCCC-C---CCCCCCCHHHHHHHhcCccccCCCCh
Q 001024 82 LGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEP-P---PGLSKLTISEAEKAIAGNLCRCTGYR 157 (1185)
Q Consensus 82 ~~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~-~---~~~~~~~~~~i~~~l~gnlCRCtgy~ 157 (1185)
|++ .+.+||||+||+++|++|||||||||||++++||++++... +.. + ...+.+|++||+++|+|||||||||+
T Consensus 126 L~~-~~~lhpvQ~Af~~~~a~QCGyCTPG~imsa~alL~~~~~~~-~~~~~~~~~~~p~pt~~eIrealsGNlCRCtgY~ 203 (217)
T PRK11433 126 LGS-PDNLHPMQAAFVKHDGFQCGYCTPGQICSSVAVLKEIKDGI-PSHVTVDLTAAPELTADEIRERMSGNICRCGAYS 203 (217)
T ss_pred cCC-CCCCCHHHHHHHHcCCCcCCCCCccHHHHHHHHHHhccccC-ccccccccccCCCCCHHHHHHHHcCCccCCCCcH
Confidence 986 56899999999999999999999999999999997642110 000 0 00123469999999999999999999
Q ss_pred hHHHHHHHhhhc
Q 001024 158 PIADACKSFAAD 169 (1185)
Q Consensus 158 ~i~~a~~~~~~~ 169 (1185)
+|++|++.++..
T Consensus 204 ~Iv~Av~~~a~~ 215 (217)
T PRK11433 204 NILEAIEDVAGE 215 (217)
T ss_pred HHHHHHHHHHhc
Confidence 999999998743
No 29
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=100.00 E-value=5e-37 Score=320.69 Aligned_cols=165 Identities=34% Similarity=0.455 Sum_probs=141.9
Q ss_pred CcEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCccccc-cccc-CCCCeeEeCCCCCCCCceEEcCCeEEecccccHHH
Q 001024 223 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY-YKEV-EHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISK 300 (1185)
Q Consensus 223 ~~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~-~k~~-~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~ 300 (1185)
+|+|++|+|++||+++++ .+++++++||||++++ ++.. ..|+.+|||++|+||++|+.++++|+|||+||+++
T Consensus 2 ~~~~~~P~sl~ea~~ll~-----~~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~ 76 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA-----KGPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSE 76 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH-----HGTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHH
T ss_pred CeEEEccCCHHHHHHHHh-----cCCCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHH
Confidence 589999999999999999 3689999999999999 4443 57899999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCcccccccCCCCCchHHHHHhcCcEEEEEeCCeeEEEe
Q 001024 301 AIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKCEKLM 380 (1185)
Q Consensus 301 l~~~~~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p~~~~sD~~~~LlAldA~v~l~s~~g~R~vp 380 (1185)
|+++... .+.+|.|.+++++|||+||||+||||||||+++|. ||++|+|+||||+|+|.+.+|+|++|
T Consensus 77 l~~~~~~---------~~~~p~L~~~~~~ias~~IRn~aTiGGNl~~~~~~---sD~~~~Llal~A~v~i~~~~g~r~~~ 144 (171)
T PF00941_consen 77 LEESPLI---------QQYFPALAQAARRIASPQIRNRATIGGNLCNASPA---SDLAPALLALDARVEIASPDGTRTVP 144 (171)
T ss_dssp HHHHHHH---------HHHHHHHHHHHCTSS-HHHHTT-BHHHHHHHTBTT----SHHHHHHHTT-EEEEEETTEEEEEE
T ss_pred Hhhcchh---------hhhHHHHHHHHHHhCCHhHeeeeeeccccccCccc---ccHHHHHHHhCcEEEEEcCCeeEEEE
Confidence 9998543 46799999999999999999999999999999998 99999999999999999999999999
Q ss_pred chhhccC---CCCCCCceEEEEEecCC
Q 001024 381 LEEFLER---PPLDSRSILLSVEIPCW 404 (1185)
Q Consensus 381 l~dF~~~---~~l~~~EiI~~I~iP~~ 404 (1185)
++|||.+ +.|+++|||++|+||.|
T Consensus 145 ~~~f~~g~~~~~l~~~eli~~I~iP~~ 171 (171)
T PF00941_consen 145 LEDFFTGPRKTDLEPGELITSIRIPKP 171 (171)
T ss_dssp GGGGEECTTEESS-TTEEEEEEEEES-
T ss_pred HHHhcCccccccCCCCcEEEEEECCCC
Confidence 9999984 48999999999999975
No 30
>PF01799 Fer2_2: [2Fe-2S] binding domain; InterPro: IPR002888 The [2Fe-2S] binding domain is found in a range of enzymes including dehydrogenases, oxidases and oxidoreductases. The aldehyde oxido-reductase (Mop) from the sulphate reducing anaerobic Gram-negative bacterium Desulfovibrio gigas is a homodimer of 907 amino acid residues subunits and is a member of the xanthine oxidase family. The protein contains a molybdopterin cofactor (Mo-co) and two different [2Fe-2S] centres. It is folded into four domains of which the first two bind the iron sulphur centres and the last two are involved in Mo-co binding. Mo-co is a molybdenum molybdopterin cytosine dinucleotide. Molybdopterin forms a tricyclic system with the pterin bicycle annealed to a pyran ring. The molybdopterin dinucleotide is deeply buried in the protein. The cis-dithiolene group of the pyran ring binds the molybdenum, which is coordinated by three more (oxygen) ligands [].; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 2E3T_A 1WYG_A 3AN1_B 2E1Q_C 2CKJ_A 3B9J_I 3NVY_J 1FO4_B 3NRZ_J 3AM9_A ....
Probab=99.96 E-value=4.2e-30 Score=227.95 Aligned_cols=75 Identities=52% Similarity=1.009 Sum_probs=61.7
Q ss_pred EecCCCCCCCCCcHHHHHHHhccCCCCCCCCchHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHhcCccccCCCCh
Q 001024 78 TSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYR 157 (1185)
Q Consensus 78 TvEg~~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtgy~ 157 (1185)
|||||++ ++.|||||++|+++|++|||||||||||++++||++ ++.| |++||+++|+|||||||||+
T Consensus 1 TvEGl~~-~~~~~~iq~af~~~~a~QCGfCtpG~im~~~~ll~~-----~~~p-------~~~ei~~al~gnlCRCTgY~ 67 (75)
T PF01799_consen 1 TVEGLAS-DGELHPIQQAFVEHGAVQCGFCTPGMIMAAYALLRR-----NPDP-------TEEEIREALSGNLCRCTGYR 67 (75)
T ss_dssp -GGGSSB-TTB--HHHHHHHHTT--SSSSSHHHHHHHHHHHHHH-----SSS--------CHHHHHHHTTTS--SSSTSH
T ss_pred CcCcCCC-CCCcCHHHHHHHHhCCCcCCcchHHHHHHHHHHhhc-----ccch-------hhHHHHHHHHcCccCCCCcH
Confidence 8999986 789999999999999999999999999999999965 4666 49999999999999999999
Q ss_pred hHHHHHHH
Q 001024 158 PIADACKS 165 (1185)
Q Consensus 158 ~i~~a~~~ 165 (1185)
+|++|++.
T Consensus 68 ~I~~Av~~ 75 (75)
T PF01799_consen 68 PIVEAVRQ 75 (75)
T ss_dssp HHHHHHH-
T ss_pred HHHHHHhC
Confidence 99999973
No 31
>PF01315 Ald_Xan_dh_C: Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; InterPro: IPR000674 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1N63_E 1N60_B 1ZXI_E 1N5W_E 1N62_B 1N61_E 3AN1_B 2E3T_A 1WYG_A 2W3R_D ....
Probab=99.94 E-value=4.6e-28 Score=234.64 Aligned_cols=107 Identities=44% Similarity=0.659 Sum_probs=88.9
Q ss_pred cccccccccCCCCCCcEEEEEEecCCCCeEEeeccCccCCCCCCeEEEEEcCCCCCCCCCC-CCccccCC--cccccCCc
Q 001024 601 SGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPEGGQNI-GSKTIFGS--EPLFADEL 677 (1185)
Q Consensus 601 tG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~pGVv~Vvt~~Dip~~g~n~-~~~~~~~~--~~~~a~~~ 677 (1185)
||+++|++|++ +|||||+++||||++||+|+|||+++|++||||++|+|++|+| +.|. +......+ +|+|++++
T Consensus 1 TG~a~Y~~Di~-~~~~l~~~~vrS~~a~a~I~sid~~~A~~~pGV~~v~t~~Dip--~~~~~~~~~~~~~~~~~~la~~~ 77 (111)
T PF01315_consen 1 TGEARYVDDIP-PPGMLYAAFVRSPIAHARIKSIDTSEALAMPGVVAVITAEDIP--GINPNGGLPIPHDEPQPVLADDK 77 (111)
T ss_dssp TT-S-BGGGSC-STTTEEEEEEE-SSSSEEEEEEEGHHHHHSTTEEEEEEGGGHS--SGSEESCSCSTTSSEEESS-SSE
T ss_pred CcCeEcccccC-CCCCeEEEEEecCcCcEEEEEEecHHHccCCCEEEEEEecccC--ccccCccccccCCCceEeccCCe
Confidence 89999999998 7899999999999999999999999999999999999999999 4332 11112233 47999999
Q ss_pred eeecCCeEEEEEECCHHHHHHhcccceEEEecCCC
Q 001024 678 TRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNL 712 (1185)
Q Consensus 678 V~y~GqpVa~VVAes~~~A~~Aa~~V~Vey~~e~l 712 (1185)
|+|+|||||+|||+|+++|++|+++|+|+| |+|
T Consensus 78 V~y~GqpVa~VvAet~~~A~~Aa~~V~V~Y--e~l 110 (111)
T PF01315_consen 78 VRYVGQPVALVVAETREAARDAAELVKVEY--EEL 110 (111)
T ss_dssp ESSTT-EEEEEEESSHHHHHHHHHT-EEEE--EE-
T ss_pred EeECCCeEEEEEECCHHHHHHHhcCcEEEe--EeC
Confidence 999999999999999999999999999999 766
No 32
>COG1529 CoxL Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]
Probab=99.74 E-value=2.4e-19 Score=225.77 Aligned_cols=433 Identities=15% Similarity=0.098 Sum_probs=277.4
Q ss_pred cccCCCCCCCC-CcccccchhhhccccccccccCCCCCCcEEEEEEecCCCCeEEeeccCccCCCCCCeEEEEEcCCCCC
Q 001024 578 VQLSREYYPVG-EPITKSGAALQASGEAIYVDDIPSPINCLYGAFIYSTKPLARIKGIEFKSESVPDVVTALLSYKDIPE 656 (1185)
Q Consensus 578 ~~~~~~~~~iG-~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~pGVv~Vvt~~Dip~ 656 (1185)
++.+..+.++| ...++ |+. ++|+.+.|..|.. .++||+..|.+++..-.+|++ |...+...++++.+...
T Consensus 176 ~~~~~~~E~~g~~a~~~-d~~-~lt~~~~tQ~~~~-~~~~l~~~l~~p~~~vrvi~~-dvGggfG~K~~~~~~~~----- 246 (731)
T COG1529 176 RKDPNPMEPHGVVAVPD-DGD-KLTVWASTQIPHR-LRGMLAAVLGIPPSKVRVISP-DVGGGFGSKGVVYVEEI----- 246 (731)
T ss_pred CcCccCcccccceeeEc-CCC-eEEEEEccCCchH-HHHHHHHHhCCCHHHeEEecC-CCCcccCCcccceeHHH-----
Confidence 56678889999 67888 777 9999999999997 689999999966655555555 88887777776544321
Q ss_pred CCCCCCCccccCCcccccCCceeecCCeEEEEEECCHHHHHHhcccceEEEecCCCCCccCCHHHHhh-cCCCcccCCcc
Q 001024 657 GGQNIGSKTIFGSEPLFADELTRCAGQPVAFVVADSQKNADRAADVAVVDYEMGNLEPPILSVEEAVD-RSSLFEVPSFL 735 (1185)
Q Consensus 657 ~g~n~~~~~~~~~~~~~a~~~V~y~GqpVa~VVAes~~~A~~Aa~~V~Vey~~e~l~p~v~~~e~Al~-~~~~~~~~~~~ 735 (1185)
.+-.-..-.|-||.++ ...+.+.+.. +.-.+...+.+-+.. .+.+..... .
T Consensus 247 ----------------~~~~aa~~~grpVk~~---------~tR~e~~~~~--~~~~~~~~~~~~~a~~dg~l~~~~~-~ 298 (731)
T COG1529 247 ----------------LAALAAVVAGRPVKWI---------ETREELFVAT--GHRRATLIDVKLGADKDGRLLAIKG-T 298 (731)
T ss_pred ----------------HHHHHHHhcCCCeEEe---------cchHHhhhcc--CCCCCceEEeeeecCcCCcEEeeee-e
Confidence 1111111223344322 2222222221 111011111111111 111100000 0
Q ss_pred ccCCCCC-----hhcc---cccCCeeEEEEEEEeccccCCCcCCCceEEEECCCCcEEEEeCCCChHHHHHHHHHHhCCC
Q 001024 736 YPKPVGD-----ISKG---MNEADHRILAAEIKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPESAHATIARCLGIP 807 (1185)
Q Consensus 736 ~~~~~Gd-----v~~a---f~~a~~~vve~~~~~~~q~H~~mEp~~avA~~~~dg~l~V~~sTQ~p~~~r~~vA~~Lglp 807 (1185)
.....|+ +.+. .....+. ++..|..++..|..||| ++.....++. ..||.+...++.+|+.|||+
T Consensus 299 ~~~~~Gay~~~~~~~~~~~~~~g~Y~-i~~~~~~~~~v~tn~~p-~~~~Rg~g~~-----~~~~a~E~~~d~lA~~Lgid 371 (731)
T COG1529 299 VAADTGAYNGPTVPAAAAGLARGPYK-IEAVYIEPYLVHTNMPP-NGAYRGAGRP-----EGTFALERAVDELAEELGID 371 (731)
T ss_pred EEecCCCccccchhHHHHHhcCCcee-cccceeeeEEEEcCCCC-CcccccCCCc-----hhHHHHHHHHHHHHHHhCCC
Confidence 0122233 2222 2233354 89999999999999999 6666554333 78999999999999999999
Q ss_pred CccEEEEEcccCCCCC-CCCccccHHHHHHHHHHHhCC---CCEEEEeChhhhhhhcCCCCceE--------EEEEEEeC
Q 001024 808 EHNVRVITRRVGGAFG-GKAIKAMPVATACALAAYKLC---RPVRIYVKRKTDMIMVGGRHPMK--------ITYSVGFK 875 (1185)
Q Consensus 808 ~~kV~V~~~~vGGgFG-gK~~~~~~~~~~aAlaA~~~g---RPVrl~~sReed~~~~~~R~~~~--------~~~k~g~~ 875 (1185)
+.+||++...-+|+|| ++......+..++..++++++ ||+|..|+|+++++..-++.-+. ...++-++
T Consensus 372 p~eiR~~n~~~~g~~~~~~~~~~~~~~~~~~~~ak~~~~~~~~~k~~~~re~~~~~G~g~a~~~~~~~~~~~~~a~v~~~ 451 (731)
T COG1529 372 PVEIRLRNLIRGGPFGLGRRYDSGDYLEELDEAAKRFGWSERPVKPIWTREGDLRRGVGRAMYTEPSGAGPGEGARVRLE 451 (731)
T ss_pred HHHHhhhhccccCCCCCcccccCccHHHHHHHHHHhcCcccccCChhhhhcCCeeeeeEEEEEEEeccCCCCCcEEEEEc
Confidence 9999999999999999 555445556667778888887 99999999999988533332221 12344456
Q ss_pred CCCcEEEEEEEEEeeCCCCCCCCcchhhh-ccccCCCcccCcEEEEEEEeecCCCCCCccCCCChhHHHHHHHHHHHHHH
Q 001024 876 SNGKITALQLNILIDAGLSPDVSPIMPSN-MIGALKKYDWGALHFDIKVCRTNLPSRSAMRAPGEVQGSFIAEAVIEHVA 954 (1185)
Q Consensus 876 ~dG~i~a~~~~~~~d~Ga~~~~s~~~~~~-~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mDelA 954 (1185)
.||++....... + ++...... .....-.|.||+-+++.....|..++ .+||++|+..+.|+.|.++++++
T Consensus 452 ~~g~v~v~~g~~--~------~G~G~~t~~~q~~ae~lgip~~~V~v~~gDt~~~~-~~~~s~GS~~~~~~~~A~~~a~~ 522 (731)
T COG1529 452 ADGTVTVRTGAT--D------IGQGTDTVLAQIAAEELGIPPDDVEVVHGDTDVPV-GGWGSVGSRGTAVAGSAVIDAAA 522 (731)
T ss_pred CCCcEEEEECCc--c------CCCcHHHHHHHHHHHHhCCCHHHEEEEecCCCCCC-CCCCCcCcccccchHHHHHHHHH
Confidence 677766443222 1 11111111 11224578999988888888888665 88999999999999999999999
Q ss_pred HHcCCCHHHHHHhhcCCCCCcccccccCCCccccCCHHHHHHHHHHhCCchhHHHHHHHHHhcCCcceeeeeeeceeecc
Q 001024 955 STLSMEVDFVRNINLHTHKSLNLFYESSAGEYAEYTLPLIWDKLAVSSSFNQRTEMIKEFNRSNLWRKKGVCRLPIVHEV 1034 (1185)
Q Consensus 955 ~~lG~DP~e~R~~Nl~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~~~rGia~~~~~~~~ 1034 (1185)
+..++||..+|+..-....+ ..|+.......|..+..........+..+.+|+.+... |+.
T Consensus 523 ~l~~k~~~~aa~~l~~~~~~------------------~~~~~g~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 583 (731)
T COG1529 523 KLAEKDPVAAARMLGADAED------------------VVLEDGAFKVGGGDRRSAVSLKEVAGKGLAPGLAVAAS-FGS 583 (731)
T ss_pred HHHHHHHHHHHhhhCCChhH------------------eeeccCeeeeccCCccceeeHHHhhhccccCccccccc-ccc
Confidence 99999999999987222211 13344444555543211000000001113467776532 332
Q ss_pred ----cccccceEEEEee-CCcEEEE--ECCcCCCCcchhHH--HHH---HHHHhcccccC
Q 001024 1035 ----TLRSTPGKVSILS-DGSVVVE--VGGIEMGQGLWTKV--KQM---AAFALSSIKCG 1082 (1185)
Q Consensus 1035 ----~~~~~~a~V~v~~-DGsV~V~--~g~~e~GqG~~T~~--aQI---aA~~Lgi~~~~ 1082 (1185)
+|....++|+|++ +|+|.|. ++..|+|.-+|+++ .|| +.+.||.+|.+
T Consensus 584 ~~~~~~~A~~~EV~Vd~~tG~vrV~r~~~~~D~G~vvNP~~~~~Qv~GGi~~Gig~aL~E 643 (731)
T COG1529 584 DNTYPYGAHIAEVEVDPETGEVRVLRVVAVDDCGRVVNPKLAEGQVEGGILMGIGMALYE 643 (731)
T ss_pred cccccceeEEEEEEEECCCCcEEEEEEEEEEecCCccCHHHHHHHHHhHHHHHHHHHhhc
Confidence 2667889999995 9999999 88999999999977 888 77777776654
No 33
>PF03450 CO_deh_flav_C: CO dehydrogenase flavoprotein C-terminal domain; InterPro: IPR005107 Proteins containing this domain form structural complexes with other known families, such as IPR008274 from INTERPRO and IPR001041 from INTERPRO]. The carbon monoxide (CO) dehydrogenase of Oligotropha carboxidovorans is a heterotrimeric complex composed of a apoflavoprotein, a molybdoprotein, and an iron-sulphur protein. It can be dissociated with sodium dodecylsulphate []. CO dehydrogenase catalyzes the oxidation of CO according to the following equation []: CO + H2O = CO2 + 2e + 2H+ Subunit S represents the iron-sulphur protein of CO dehydrogenase and is clearly divided into a C- and an N-terminal domain, each binding a [2Fe-2S] cluster [].; PDB: 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B 3UNI_A 3AMZ_A ....
Probab=99.68 E-value=2.2e-16 Score=151.58 Aligned_cols=101 Identities=27% Similarity=0.390 Sum_probs=91.9
Q ss_pred eEeccCCCCCCcccceeeeEEEEEcCCcCCCCceeeeeEEEEcccCCCCcccHHHHHHHHcCCCCCHHHHHHHHHHHccc
Q 001024 422 TYRAAPRPLGNALPHLNAAFLAEVSPCKTGDGIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLLRDS 501 (1185)
Q Consensus 422 ~~k~~~Rr~~~d~a~v~~A~~~~~~~~~~~~~~~i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~~~~~~l~~a~~~l~~e 501 (1185)
+||..+| +++|++++|+|+.+.+++ +++|+++||++||++++ |+|++++|++|.|+++++++++++.+.+.++
T Consensus 2 ayk~~~R-~~~d~a~v~~a~~~~~~~-----~~~i~~~ria~g~v~~~-p~r~~~~E~~L~g~~~~~~~~~~~~~~~~~~ 74 (103)
T PF03450_consen 2 AYKIGRR-KANDIAIVNVAVLVSVDD-----DGRIEDARIAVGGVAPT-PVRAEEVEAALIGKPLSEETLEEAAEAVSEE 74 (103)
T ss_dssp EEEESSS-SSSSSSSEEEEEEEEEET-----TSEEEEEEEEEESSSSS-TEE-HHHHHHTTTSBSSHHHHHHHHHHHHHH
T ss_pred CeeccCc-cccHHHHHhhhheEEEec-----CceEEEEEEEEeccccc-eeehHHHHHHHhhcchhhhhHHHHHHHHHhc
Confidence 5755555 899999999999999973 45999999999999999 9999999999999999999999999999999
Q ss_pred CCcCCCC-CcHHHHHHHHHHHHHHHHHHH
Q 001024 502 VVPEDGT-SIPAYRSSLAVGFLYEFFGSL 529 (1185)
Q Consensus 502 ~~p~~~~-~sa~YR~~la~~l~~r~l~~~ 529 (1185)
+.|.+|. +|++||++|+.+|++|+|.++
T Consensus 75 ~~~~~d~r~s~~YR~~l~~~l~~ral~~~ 103 (103)
T PF03450_consen 75 IDPISDMRASAEYRRHLARVLVRRALEEV 103 (103)
T ss_dssp THHCTTTTBTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999885 899999999999999999874
No 34
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.75 E-value=8.7e-09 Score=113.74 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=62.5
Q ss_pred CccccccHHHHHHHHhhcccccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEecC
Q 001024 2 EKSLRSQALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEG 81 (1185)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEg 81 (1185)
+.....++|++|+.+-..-+-|++ +|.||++|.||+|+|+| ||++++||.+++..++|.+++|||+
T Consensus 25 ~~~~~~tvLd~L~~i~~~~d~~l~----~r~~C~~g~CGsCa~~I----------nG~p~laC~t~~~~~~~~~~itiep 90 (251)
T PRK12386 25 EVNEGEVVLDVIHRLQATQAPDLA----VRWNCKAGKCGSCSAEI----------NGRPRLMCMTRMSTFDEDETVTVTP 90 (251)
T ss_pred eCCCCCCHHHHHHHhccccCCCCc----ccCCCCCCcCCCCEEEE----------CccEeccHHhHHHHhCCCCeEEEcc
Confidence 445678899999997777788887 99999999999999999 9999999999999999999999999
Q ss_pred CCC
Q 001024 82 LGN 84 (1185)
Q Consensus 82 ~~~ 84 (1185)
|.+
T Consensus 91 l~~ 93 (251)
T PRK12386 91 MRT 93 (251)
T ss_pred CCC
Confidence 974
No 35
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=98.20 E-value=2.1e-06 Score=82.71 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=56.9
Q ss_pred CccccccHHHHHHHHhhcccccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCE--EEEe
Q 001024 2 EKSLRSQALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCL--ITTS 79 (1185)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~--i~Tv 79 (1185)
+.....+.|++|..+.+..+.||| ...+|.+|.||+|.|.| ||+++.+|.+++..+.+.. .+||
T Consensus 24 ~~~~~~tVLd~L~~Ik~~~D~sLa----fr~sCr~giCGsCam~I----------NG~~~LAC~t~v~~~~~~~~~~i~I 89 (110)
T PF13085_consen 24 PVEPGMTVLDALNYIKEEQDPSLA----FRYSCRSGICGSCAMRI----------NGRPRLACKTQVDDLIEKFGNVITI 89 (110)
T ss_dssp EGGSTSBHHHHHHHHHHHT-TT------B--SSSSSSSSTTEEEE----------TTEEEEGGGSBGGGCTTSETBEEEE
T ss_pred cCCCCCcHHHHHHHHHhccCCCeE----EEecCCCCCCCCCEEEE----------CCceecceeeEchhccCCCcceEEE
Confidence 344667899999999999999999 67999999999999999 9999999999999998763 6779
Q ss_pred cCCCC
Q 001024 80 EGLGN 84 (1185)
Q Consensus 80 Eg~~~ 84 (1185)
|=|.+
T Consensus 90 ePL~~ 94 (110)
T PF13085_consen 90 EPLPN 94 (110)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 98864
No 36
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.15 E-value=1.8e-06 Score=95.23 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=57.9
Q ss_pred ccccHHHHHHHHhhcccccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEecCCCC
Q 001024 5 LRSQALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGN 84 (1185)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEg~~~ 84 (1185)
...++|++|+.+-+..+.+++ .+.||++|.||+|+|.| ||+++.||.+++..+ |.+++|||+|.+
T Consensus 27 ~~~tvl~~L~~~~~~~~~~l~----~~~~c~~g~Cg~C~v~v----------nG~~~laC~t~~~~~-~~~~~tiepl~~ 91 (232)
T PRK05950 27 CGPMVLDALIKIKNEIDPTLT----FRRSCREGVCGSDAMNI----------NGKNGLACITPISDL-KKGKIVIRPLPG 91 (232)
T ss_pred CCCHHHHHHHHhCCccCCcce----eeCCCCCCCCCCCEEEE----------CCcCccchhChHhHc-CCCeEEEEECCC
Confidence 678899999998766677776 78999999999999999 899999999999999 668899999975
No 37
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=98.08 E-value=3.2e-06 Score=92.56 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=60.1
Q ss_pred CccccccHHHHHHHHhhcccccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEecC
Q 001024 2 EKSLRSQALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEG 81 (1185)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEg 81 (1185)
+.....++|++|+.+-+..+.+++ .+.+|+.|.||+|+|.| ||+++.||.+++..+ |++++|||+
T Consensus 20 ~~~~~~tvl~~l~~i~~~~~~~l~----~~~~C~~g~Cg~C~v~v----------nG~~~laC~t~v~~~-g~~~~~iep 84 (220)
T TIGR00384 20 PADEGMTVLDALNYIKDEQDPSLA----FRRSCRNGICGSCAMNV----------NGKPVLACKTKVEDL-GQPVMKIEP 84 (220)
T ss_pred eCCCCCcHHHHHHHHHHhcCCCce----eecccCCCCCCCCeeEE----------CCEEhhhhhChHHHc-CCCcEEEee
Confidence 345678899999998877777776 78999999999999999 899999999999988 899999999
Q ss_pred CCC
Q 001024 82 LGN 84 (1185)
Q Consensus 82 ~~~ 84 (1185)
|.+
T Consensus 85 l~~ 87 (220)
T TIGR00384 85 LPN 87 (220)
T ss_pred CCC
Confidence 974
No 38
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.07 E-value=2.8e-06 Score=95.98 Aligned_cols=69 Identities=20% Similarity=0.184 Sum_probs=60.7
Q ss_pred CccccccHHHHHHHHhhcccccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhc--CCCEEEEe
Q 001024 2 EKSLRSQALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSV--NGCLITTS 79 (1185)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~--~g~~i~Tv 79 (1185)
+.....++|++|+.+-+..+.|++ .+.+|++|.||+|+|.| ||+++.||.+++..+ ++.+++||
T Consensus 30 ~~~~~~tvLd~L~~i~~~~d~tl~----~~~~C~~G~CgsC~v~I----------NG~~~laC~t~v~~~~~~~~~~~ti 95 (279)
T PRK12576 30 KVDRFTQVTEALRRIKEEQDPTLS----YRASCHMAVCGSCGMKI----------NGEPRLACKTLVLDVAKKYNSVITI 95 (279)
T ss_pred ecCCCCHHHHHHHHhCCccCCCce----ecCCCCCCCCCCCEEEE----------CCcEeccccCcHHHhhcCCCCcEEE
Confidence 445677899999999888888887 78999999999999999 899999999999998 36678999
Q ss_pred cCCCC
Q 001024 80 EGLGN 84 (1185)
Q Consensus 80 Eg~~~ 84 (1185)
|+|.+
T Consensus 96 ePl~~ 100 (279)
T PRK12576 96 EPMDY 100 (279)
T ss_pred EECCC
Confidence 99975
No 39
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=97.62 E-value=5.3e-05 Score=84.09 Aligned_cols=67 Identities=19% Similarity=0.292 Sum_probs=57.5
Q ss_pred CccccccHHHHHHHHhhcccccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEecC
Q 001024 2 EKSLRSQALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEG 81 (1185)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEg 81 (1185)
+.....++|++|..+.+..+.|++ .+.+|+.|.||+|+|.| ||+++.+|.+++..+.+. +|||=
T Consensus 30 ~~~~~~tvl~~L~~ik~~~d~~l~----fr~~C~~giCGsC~v~I----------nG~~~laC~t~~~~~~~~--~~ieP 93 (244)
T PRK12385 30 PYDETTSLLDALGYIKDNLAPDLS----YRWSCRMAICGSCGMMV----------NNVPKLACKTFLRDYTGG--MKVEA 93 (244)
T ss_pred eCCCCCcHHHHHHHHHHhcCCCce----eccCCCCCcCCCCcceE----------CccChhhHhhHHHHcCCC--eEEee
Confidence 445778999999999999999988 66799999999999999 899999999999987532 56887
Q ss_pred CCC
Q 001024 82 LGN 84 (1185)
Q Consensus 82 ~~~ 84 (1185)
|.+
T Consensus 94 l~~ 96 (244)
T PRK12385 94 LAN 96 (244)
T ss_pred CCC
Confidence 753
No 40
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=97.42 E-value=0.00016 Score=80.10 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=59.8
Q ss_pred CccccccHHHHHHHHhhcccccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEecC
Q 001024 2 EKSLRSQALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEG 81 (1185)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEg 81 (1185)
+.....++|++|..+-+..+.||+ ...+|.+|.||+|.|.| ||+++.+|.+.+..+.+. .+|||=
T Consensus 29 ~~~~~~tvLdaL~~Ik~~~D~sL~----fr~sCr~giCGsCam~I----------NG~~~LAC~t~v~~~~~~-~i~ieP 93 (239)
T PRK13552 29 EETPGMTLFIALNRIREEQDPSLQ----FDFVCRAGICGSCAMVI----------NGRPTLACRTLTSDYPDG-VITLMP 93 (239)
T ss_pred cCCCCCCHHHHHHHHHhcCCCCee----EeccCCCCCCCCceeEE----------CCeEhhhhhccHhhcCCC-cEEEEE
Confidence 445678999999999999999999 78999999999999999 999999999999887533 467998
Q ss_pred CCC
Q 001024 82 LGN 84 (1185)
Q Consensus 82 ~~~ 84 (1185)
|.+
T Consensus 94 l~~ 96 (239)
T PRK13552 94 LPV 96 (239)
T ss_pred CCC
Confidence 864
No 41
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=97.14 E-value=0.00045 Score=75.31 Aligned_cols=68 Identities=21% Similarity=0.204 Sum_probs=61.5
Q ss_pred CccccccHHHHHHHHhhcccccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEecC
Q 001024 2 EKSLRSQALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEG 81 (1185)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEg 81 (1185)
|.....++|+.|.++.+.-+.||+ ....|.+|.||+|.+.| ||++..||.+.+..+... ++|||=
T Consensus 25 ~~~~~~~vLdaL~~Ik~e~d~~Ls----fr~sCR~gICGSCam~I----------NG~prLAC~t~~~~~~~~-~i~ieP 89 (234)
T COG0479 25 PYDEGMTVLDALLYIKEEQDPTLS----FRRSCREGICGSCAMNI----------NGKPRLACKTLMKDLEEG-VITIEP 89 (234)
T ss_pred cCCCCCcHHHHHHHHHHhcCCccc----hhhhccCCcCCcceeEE----------CCccccchhchhhhccCC-ceEEEE
Confidence 344677899999999999999999 78999999999999999 999999999999998776 888999
Q ss_pred CCC
Q 001024 82 LGN 84 (1185)
Q Consensus 82 ~~~ 84 (1185)
|.+
T Consensus 90 L~~ 92 (234)
T COG0479 90 LPN 92 (234)
T ss_pred CCC
Confidence 874
No 42
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.12 E-value=0.0019 Score=75.04 Aligned_cols=69 Identities=20% Similarity=0.173 Sum_probs=57.3
Q ss_pred CccccccHHHHHHHHhhcccccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHh-cC--------
Q 001024 2 EKSLRSQALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCS-VN-------- 72 (1185)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~-~~-------- 72 (1185)
+.....++|++|+.+-...+.||+ -..+|..|.||+|.|.| ||+++.||.+++.. ++
T Consensus 24 ~~~~~~tvL~~l~~i~~~~d~tL~----~~~~c~~~~Cg~C~v~i----------nG~~~laC~t~v~~~~~~~~~~~~~ 89 (329)
T PRK12577 24 EVEPGNTILDCLNRIKWEQDGSLA----FRKNCRNTICGSCAMRI----------NGRSALACKENVGSELARLSDSNSG 89 (329)
T ss_pred ECCCCChHHHHHHHhCCcCCCCcE----EcCCCCCCCCCCCEEEE----------CCeeecCcccchhhhhccccccccC
Confidence 445678999999999988888998 56799999999999999 89999999999875 32
Q ss_pred CCEEEEecCCCC
Q 001024 73 GCLITTSEGLGN 84 (1185)
Q Consensus 73 g~~i~TvEg~~~ 84 (1185)
+...+|||=|++
T Consensus 90 ~~~~i~iePl~~ 101 (329)
T PRK12577 90 AIPEITIAPLGN 101 (329)
T ss_pred CCCeEEEEECCC
Confidence 224678999976
No 43
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=97.10 E-value=0.00053 Score=76.96 Aligned_cols=64 Identities=19% Similarity=0.196 Sum_probs=56.2
Q ss_pred cccHHHHHHHHhhcccccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEecCCCC
Q 001024 6 RSQALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGN 84 (1185)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEg~~~ 84 (1185)
..++|++|..+.+..+.||+ ...+|.+|.||+|.|.| ||+++.+|.+.+..+.+. .+|||=|.+
T Consensus 72 ~~tVLd~L~~Ik~~~D~sLs----fr~sCr~giCGsCam~I----------NG~p~LAC~t~v~~~~~~-~i~iePl~~ 135 (276)
T PLN00129 72 GPMVLDVLIKIKNEQDPSLT----FRRSCREGICGSCAMNI----------DGKNTLACLTKIDRDESG-PTTITPLPH 135 (276)
T ss_pred CchHHHHHHHHHHcCCCCeE----EeccCCCCCCCCCeeEE----------CCcccccccccHhhcCCC-cEEEEECCC
Confidence 46799999999999999999 77899999999999999 999999999999887533 456998864
No 44
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.04 E-value=0.00069 Score=74.71 Aligned_cols=62 Identities=16% Similarity=0.103 Sum_probs=54.0
Q ss_pred cccHHHHHHHHhhcccccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEecCCCC
Q 001024 6 RSQALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGN 84 (1185)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEg~~~ 84 (1185)
..++|++|..+- ..+.||+ ...+|.+|.||+|.|+| ||++..+|.+.+-.+.+ + +|||=|.+
T Consensus 33 ~~tvld~L~~ik-~~d~~l~----fr~sCr~giCGsCa~~i----------NG~~~LaC~t~~~~~~~-~-i~iePl~~ 94 (235)
T PRK12575 33 DRMLLDVLGRVK-AQDETLS----YRRSCREGICGSDAMNI----------NGRNGLACLTNMQALPR-E-IVLRPLPG 94 (235)
T ss_pred CCcHHHHHHHHH-hcCCCee----eeccCCCCCCCCCeeEE----------CCeEcchhhCcHhHcCC-C-EEEeECCC
Confidence 457999999998 5699999 67899999999999999 99999999999998853 3 67998854
No 45
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=96.79 E-value=0.0014 Score=72.90 Aligned_cols=67 Identities=16% Similarity=0.143 Sum_probs=55.5
Q ss_pred ccccccHHHHHHHHhhcc----cccccccccccccccCCCCCccEEEEcccCCCcCCCCCee------ccchHhhhHhcC
Q 001024 3 KSLRSQALTLLRLCLSSC----VITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFT------ISSCLTLLCSVN 72 (1185)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~------v~sCl~~~~~~~ 72 (1185)
.+...+.|++|..+-+.. +-+|+ ...+|.+|.||+|.|.| ||+| ..||.+.+..+.
T Consensus 27 ~~~~~tvLd~L~~Ik~~~~~~~~~~l~----fr~sCr~~iCGsCam~I----------NG~p~~~~~~~LAC~t~~~~~~ 92 (250)
T PRK07570 27 ISPDMSFLEMLDVLNEQLIEKGEEPVA----FDHDCREGICGMCGLVI----------NGRPHGPDRGTTTCQLHMRSFK 92 (250)
T ss_pred CCCCCcHHHHHHHHHHHhhccCCCCee----EeccccCCcCCcceeEE----------CCccCCCCcccchhhhhhhhcC
Confidence 356778999999998765 13566 79999999999999999 9999 899999988886
Q ss_pred CCEEEEecCCC
Q 001024 73 GCLITTSEGLG 83 (1185)
Q Consensus 73 g~~i~TvEg~~ 83 (1185)
+...+|||=|.
T Consensus 93 ~~~~i~iePl~ 103 (250)
T PRK07570 93 DGDTITIEPWR 103 (250)
T ss_pred CCCeEEEEECC
Confidence 54567899884
No 46
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=96.68 E-value=0.002 Score=71.89 Aligned_cols=68 Identities=12% Similarity=0.184 Sum_probs=55.5
Q ss_pred CCccccccHHHHHHHHhhcc-------cccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCC
Q 001024 1 MEKSLRSQALTLLRLCLSSC-------VITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNG 73 (1185)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g 73 (1185)
||.+..-++|++|..+.+.. +-+|+ ...+|.+|.||+|.|.| ||+|..+|.+.+-.+.+
T Consensus 27 v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~----fr~sCr~giCGsCam~I----------NG~p~LAC~t~v~~~~~ 92 (249)
T PRK08640 27 IPYRPNMNVISALMEIRRNPVNAKGEKTTPVV----WDMNCLEEVCGACSMVI----------NGKPRQACTALIDQLEQ 92 (249)
T ss_pred ecCCCCCcHHHHHHHHHhcccccccccCCCee----EecccCCCCCCcCeeEE----------CCccchhhhChHHHcCC
Confidence 34566788999999998752 34465 78999999999999999 99999999999988732
Q ss_pred CEEEEecCCCC
Q 001024 74 CLITTSEGLGN 84 (1185)
Q Consensus 74 ~~i~TvEg~~~ 84 (1185)
.+|||=|.+
T Consensus 93 --~i~iePl~~ 101 (249)
T PRK08640 93 --PIRLEPMST 101 (249)
T ss_pred --cEEEEECCC
Confidence 467998864
No 47
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=96.21 E-value=0.0081 Score=60.67 Aligned_cols=106 Identities=18% Similarity=0.211 Sum_probs=73.1
Q ss_pred EEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEcCCeEEecccccHHHHHHH
Q 001024 225 SWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEA 304 (1185)
Q Consensus 225 ~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~ 304 (1185)
-+++|+|.+|+.++++.... .+-..++.+||+.+.-... .....+||++++...-.+..++..++++|++++.+|.+.
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~-~~~~v~~~g~G~~~~~~~~-~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~~ 80 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANE-NGVPVRVRGGGHSWTGQSS-DEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYEA 80 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHH-TTSEEEEESSSTTSSSTTS-STTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHH-cCCcEEEEcCCCCcccccc-cCCcEEEeeccccccccccccceeEEEeccccchhcccc
Confidence 47899999999998874321 2456778889888853221 356789999986653344555789999999999999987
Q ss_pred HHHhhhhhhhhhHhhHHHHHHHHHhhh-chhhhcccccCCccccccc
Q 001024 305 LKEETKEFHSEALMVFKKIAGHMEKIA-SRFIRNSASVGGNLVMAQR 350 (1185)
Q Consensus 305 ~~~~~~~~~~~~~~~~p~L~~~~~~ia-s~qIRN~aTiGGNI~~a~p 350 (1185)
+... -..+. .+.--.-+|+||.|++..-
T Consensus 81 l~~~------------------g~~~~~~~~~~~~~tvGG~i~~~~~ 109 (139)
T PF01565_consen 81 LAPR------------------GLMLPVEPGSGIPGTVGGAIAGNGH 109 (139)
T ss_dssp HHHH------------------TEEESSGGGSTTTSBHHHHHHTT-E
T ss_pred cccc------------------cccccccccccccceEchhhcCCCc
Confidence 6532 11122 2334456799999988654
No 48
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=96.15 E-value=0.034 Score=63.91 Aligned_cols=163 Identities=18% Similarity=0.210 Sum_probs=97.9
Q ss_pred cccccC-CcEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEcCCeEEeccc
Q 001024 217 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGAT 295 (1185)
Q Consensus 217 ~~~~~~-~~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~ 295 (1185)
++.+.+ ...++.|+|.+|+.++++.... .+-...++.|||.+.+ .+......+||+++ .|+.|+.+++.+++||+
T Consensus 24 t~~igg~a~~vv~P~s~edv~~~v~~a~~-~~~p~~v~GgGsnll~-~d~g~~gvvI~l~~--~l~~i~~~~~~v~v~aG 99 (298)
T PRK13905 24 SFRVGGPADYLVEPADIEDLQEFLKLLKE-NNIPVTVLGNGSNLLV-RDGGIRGVVIRLGK--GLNEIEVEGNRITAGAG 99 (298)
T ss_pred eeecCceEeEEEeCCCHHHHHHHHHHHHH-cCCCEEEEeCCceEEe-cCCCcceEEEEecC--CcceEEecCCEEEEECC
Confidence 344555 5567999999999998863321 2346888999999754 22223478899874 46777777889999999
Q ss_pred ccHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCcccccccCCCCCchHHHHHhcCcEEEEEeCCe
Q 001024 296 VTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK 375 (1185)
Q Consensus 296 vTl~~l~~~~~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p~~~~sD~~~~LlAldA~v~l~s~~g 375 (1185)
+++.+|.+.+... .+. -+...++. -+||||.+++.... |-.++.-.+ . .|++...+|
T Consensus 100 ~~~~~L~~~l~~~----------Gl~----gle~~~gi----pGTVGGai~~NaG~-~G~~~~d~v--~--~v~vv~~~G 156 (298)
T PRK13905 100 APLIKLARFAAEA----------GLS----GLEFAAGI----PGTVGGAVFMNAGA-YGGETADVL--E--SVEVLDRDG 156 (298)
T ss_pred CcHHHHHHHHHHc----------CCC----cchhccCC----CcchhHHHHHcCCc-CceEhheeE--E--EEEEEeCCC
Confidence 9999999887653 111 11112222 26888888643321 001111111 1 244444556
Q ss_pred -eEEEechhhccC---CCCC-CCceEEEEEecCCCc
Q 001024 376 -CEKLMLEEFLER---PPLD-SRSILLSVEIPCWDL 406 (1185)
Q Consensus 376 -~R~vpl~dF~~~---~~l~-~~EiI~~I~iP~~~~ 406 (1185)
.++++-+|.+-. ..+. ...||+++.+...+.
T Consensus 157 ~~~~~~~~e~~~~yR~s~~~~~~gII~~~~l~l~~~ 192 (298)
T PRK13905 157 EIKTLSNEELGFGYRHSALQEEGLIVLSATFQLEPG 192 (298)
T ss_pred CEEEEEHHHcCCcCccccCCCCCEEEEEEEEEEcCC
Confidence 556776664422 1233 245999998876543
No 49
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=95.83 E-value=0.016 Score=70.97 Aligned_cols=107 Identities=10% Similarity=0.247 Sum_probs=75.4
Q ss_pred CcEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEcCCeEEecccccHHHHH
Q 001024 223 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAI 302 (1185)
Q Consensus 223 ~~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~ 302 (1185)
...+++|+|.+|+.++++.... .+...++++||++..-... ....+||++++..+-.|..+...++++|++++.+|.
T Consensus 62 p~~~~~P~s~eEV~~iV~~A~~-~g~~Vr~~GsGhS~sg~a~--t~g~lldL~~ln~Vl~vD~~~~tVtV~AG~~l~~L~ 138 (541)
T TIGR01676 62 TRTFHQPEAIEELEGIVKQANE-KKARIRPVGSGLSPNGIGL--SRAGMVNLALMDKVLEVDEEKKRVRVQAGIRVQQLV 138 (541)
T ss_pred cceEECCCCHHHHHHHHHHHHH-cCCcEEEECCCcCCCCccc--CCCeEEEhhhCCCCEEEcCCCCEEEEcCCCCHHHHH
Confidence 4568999999999999875421 2346888999988733211 234689999988766667777899999999999998
Q ss_pred HHHHHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCccccccc
Q 001024 303 EALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 350 (1185)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p 350 (1185)
+.+..+ .. .+.+..-=+..||||+|+++.-
T Consensus 139 ~~L~~~--------Gl----------al~n~gsi~~~TIGGaiatgtH 168 (541)
T TIGR01676 139 DAIKEY--------GI----------TLQNFASIREQQIGGIIQVGAH 168 (541)
T ss_pred HHHHHc--------CC----------EeccCCCCCCceEccccccCCc
Confidence 876642 00 1112222356899999998744
No 50
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=95.58 E-value=0.018 Score=70.88 Aligned_cols=62 Identities=19% Similarity=0.309 Sum_probs=49.8
Q ss_pred ccccccHHHHHHHHhhcccccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEec
Q 001024 3 KSLRSQALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSE 80 (1185)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvE 80 (1185)
.....++|+.|+......+-+++ .+.+|+.|.||+|+|.+ +|+++.||.+++. +|..|.+..
T Consensus 27 ~~~~~tvl~al~~~~~~~~~~l~----~~~~C~~g~Cg~C~v~v----------~G~~~laC~~~~~--~~~~i~~~~ 88 (486)
T PRK06259 27 VKEGMTVLDALEYINKTYDANIA----FRSSCRAGQCGSCAVTI----------NGEPVLACKTEVE--DGMIIEPLD 88 (486)
T ss_pred CCCCChHHHHHHHhchhcCCCce----ecCCCCCCCCCCCEEEE----------CCeEecccccCCC--CCCEEEecC
Confidence 34567888888887765566666 46799999999999998 7889999999875 578887775
No 51
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=95.52 E-value=0.021 Score=69.57 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=78.7
Q ss_pred CcEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEcCCeEEecccccHHHHH
Q 001024 223 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAI 302 (1185)
Q Consensus 223 ~~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~ 302 (1185)
...+..|+|.+|+.++++.-.. .+-...+.+|||++.--..-. ..++||++++..+..|..++..+++.+++++.+|.
T Consensus 32 p~~v~~p~s~~eV~~iv~~a~~-~~~~v~prG~gts~~g~~~~~-~gvvl~l~~mn~i~~id~~~~~~~v~aGv~l~~l~ 109 (459)
T COG0277 32 PLAVVFPKSEEEVAAILRLANE-NGIPVVPRGGGTSLSGGAVPD-GGVVLDLSRLNRILEIDPEDGTATVQAGVTLEDLE 109 (459)
T ss_pred CCEEEccCCHHHHHHHHHHHHH-cCCeEEEECCCCCccccccCC-CcEEEEchhhcchhccCcCCCEEEEcCCccHHHHH
Confidence 4468999999999998874211 122367789999985421111 27899999976655666778999999999999998
Q ss_pred HHHHHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCccccccc
Q 001024 303 EALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 350 (1185)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p 350 (1185)
+.+..+ ...+ =..|+.++.+||||||++...
T Consensus 110 ~~l~~~--------G~~~---------p~~p~s~~~~tIGG~ia~~~~ 140 (459)
T COG0277 110 KALAPH--------GLFL---------PVDPSSSGTATIGGNIATNAG 140 (459)
T ss_pred HHHHHc--------CCcc---------CCCccccccceEccchhcCCC
Confidence 876642 0111 136677799999999998876
No 52
>PRK09970 xanthine dehydrogenase subunit XdhA; Provisional
Probab=95.45 E-value=0.25 Score=64.07 Aligned_cols=60 Identities=25% Similarity=0.284 Sum_probs=49.4
Q ss_pred CcCCCceEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEE-------cccCCCCCCCCc
Q 001024 768 YMETQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVIT-------RRVGGAFGGKAI 827 (1185)
Q Consensus 768 ~mEp~~avA~~~~dg~l~V~~sTQ~p-----~~~r~~vA~~Lglp~~kV~V~~-------~~vGGgFGgK~~ 827 (1185)
.++..++....+.||.++|++++.-. +.+.+.+|+.||+|.++|+|+. ++-+|.||++..
T Consensus 457 ~~~~~~a~v~i~~dGsv~v~~g~~e~GQG~~T~~aQiaAe~LGi~~~~V~v~~~~dT~~~p~~~gt~aSr~t 528 (759)
T PRK09970 457 GLEIAGARLLMNQDGTVQVQSGATEIGQGSDTVFSQMVAETVGIPVSDVRVISTQDTDVTPFDPGAYASRQS 528 (759)
T ss_pred CCCcceEEEEEccCceEEEEECCCCcCCCHHHHHHHHHHHHhCCCHHhEEEEccCCCCCCCCCCCCchhhhH
Confidence 46677888888889999999998654 5678999999999999999983 356778888864
No 53
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=95.32 E-value=0.033 Score=68.55 Aligned_cols=108 Identities=10% Similarity=0.032 Sum_probs=73.3
Q ss_pred cEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEcCCeEEecccccHHHHHH
Q 001024 224 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIE 303 (1185)
Q Consensus 224 ~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~ 303 (1185)
...++|.|.+|+.++++-... .+-...+.+|||++.--..-.....+||++++.....|..++..++++|++|+.+|.+
T Consensus 57 ~~Vv~P~s~eeV~~iv~~a~~-~~ipv~~rG~Gt~~~gg~~~~~~gividl~~ln~I~~id~~~~~v~VeaGv~~~~L~~ 135 (499)
T PRK11230 57 LLVVLPKQMEQVQALLAVCHR-LRVPVVARGAGTGLSGGALPLEKGVLLVMARFNRILDINPVGRRARVQPGVRNLAISQ 135 (499)
T ss_pred CEEEeeCCHHHHHHHHHHHHH-cCCeEEEECCCcCcCCCcccCCCcEEEEcccCCCceEEcCCCCEEEEcCCccHHHHHH
Confidence 457899999999998873211 1234567789998732110012468999999765555666778999999999999998
Q ss_pred HHHHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCcccccc
Q 001024 304 ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQ 349 (1185)
Q Consensus 304 ~~~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~ 349 (1185)
.+..+ ...+ -..+.-...+||||||++..
T Consensus 136 ~l~~~--------Gl~~---------~~~p~s~~~~tvGG~ia~na 164 (499)
T PRK11230 136 AAAPH--------GLYY---------APDPSSQIACSIGGNVAENA 164 (499)
T ss_pred HHHHc--------CCee---------CCCCCccccceEcceeccCC
Confidence 87753 0001 12344456799999998753
No 54
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=95.22 E-value=0.097 Score=60.25 Aligned_cols=162 Identities=14% Similarity=0.115 Sum_probs=101.4
Q ss_pred cccccC-CcEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEcCCeEEeccc
Q 001024 217 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGAT 295 (1185)
Q Consensus 217 ~~~~~~-~~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~ 295 (1185)
++.+.+ ...++.|+|.+|+.++++-... ..-...++.|||.+.+-.. ..+..+|++++. +..|..+++.+++||+
T Consensus 29 t~~igg~a~~~v~p~~~edl~~~v~~a~~-~~ip~~vlGgGSNllv~d~-g~~gvVI~l~~~--~~~i~~~~~~v~v~AG 104 (302)
T PRK14652 29 AVRVGGPADLLVRPADPDALSALLRAVRE-LGVPLSILGGGANTLVADA-GVRGVVLRLPQD--FPGESTDGGRLVLGAG 104 (302)
T ss_pred EeecCCcceEEEEcCCHHHHHHHHHHHHH-CCCcEEEEcCCcceeecCC-CEeeEEEEecCC--cceEEecCCEEEEECC
Confidence 345555 5678899999999988863211 2345788999999854322 234688998752 5567777789999999
Q ss_pred ccHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCcccccccCCCCCchHHHHHhcCcEEEEEeCCe
Q 001024 296 VTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK 375 (1185)
Q Consensus 296 vTl~~l~~~~~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p~~~~sD~~~~LlAldA~v~l~s~~g 375 (1185)
+++.+|.+.+..+ .+.. +...++.+ ||+||++++-... +-.++.=.+. .|++...+|
T Consensus 105 ~~~~~L~~~~~~~----------GL~G----lE~l~gIP----GTvGGav~mNaGa-~ggei~d~v~----~v~vv~~~G 161 (302)
T PRK14652 105 APISRLPARAHAH----------GLVG----MEFLAGIP----GTLGGAVAMNAGT-KLGEMKDVVT----AVELATADG 161 (302)
T ss_pred CcHHHHHHHHHHc----------CCcc----cccccCCC----cchhHHHHHcCCC-CceEhhheEE----EEEEECCCC
Confidence 9999999886643 1111 22223222 6999999766431 1123333332 455555667
Q ss_pred eEEEechh-hcc--CCCCCCCceEEEEEecCCC
Q 001024 376 CEKLMLEE-FLE--RPPLDSRSILLSVEIPCWD 405 (1185)
Q Consensus 376 ~R~vpl~d-F~~--~~~l~~~EiI~~I~iP~~~ 405 (1185)
.++++-+| +|. ...+..+-||+++.+...+
T Consensus 162 ~~~~~~~e~~f~YR~s~~~~~~II~~a~~~L~~ 194 (302)
T PRK14652 162 AGFVPAAALGYAYRTCRLPPGAVITRVEVRLRP 194 (302)
T ss_pred cEEeehhhcCcccceeccCCCeEEEEEEEEEec
Confidence 66777776 332 1123334699998887654
No 55
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=95.04 E-value=0.23 Score=56.90 Aligned_cols=162 Identities=10% Similarity=0.107 Sum_probs=94.3
Q ss_pred cccccC-CcEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEcCCeEEeccc
Q 001024 217 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGAT 295 (1185)
Q Consensus 217 ~~~~~~-~~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~ 295 (1185)
++.+.+ ...|+.|.|.+|+.++++.... +.-...++.||+-+.+-........+|-+.+ ++.|+..++.|++||+
T Consensus 26 t~~iGG~A~~~~~p~~~~eL~~~l~~~~~-~~~p~~vlG~GSNlLv~D~g~~~g~vi~~~~---~~~i~~~~~~v~a~AG 101 (302)
T PRK14650 26 TYKIGGISKLFLTPKTIKDAEHIFKAAIE-EKIKIFILGGGSNILINDEEEIDFPIIYTGH---LNKIEIHDNQIVAECG 101 (302)
T ss_pred eeeeCcEEEEEEecCCHHHHHHHHHHHHH-cCCCEEEEeceeEEEEECCCccceEEEEECC---cCcEEEeCCEEEEEeC
Confidence 456666 5678899999999998864321 1345778899888865433213456676543 6777777789999999
Q ss_pred ccHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCcccccccCCCCCchHHHHHhcCcEEEEEeCCe
Q 001024 296 VTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK 375 (1185)
Q Consensus 296 vTl~~l~~~~~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p~~~~sD~~~~LlAldA~v~l~s~~g 375 (1185)
+.+.+|.....+.. ..-+..|+--=..+|+-.+-|.|+-|+-|. -.+. +|++.+.+|
T Consensus 102 ~~~~~l~~~~~~~g-------l~GlE~l~gIPGTVGGAv~mNAGayG~ei~------------d~l~----sV~~~d~~g 158 (302)
T PRK14650 102 TNFEDLCKFALQNE-------LSGLEFIYGLPGTLGGAIWMNARCFGNEIS------------EILD----KITFIDEKG 158 (302)
T ss_pred CcHHHHHHHHHHcC-------CchhhhhcCCCcchhHHHHhhCCccccchh------------eeEE----EEEEEECCC
Confidence 99999988765430 001111211112333444444444333332 2221 345555445
Q ss_pred -eEEEechhhcc---CCCCCC-CceEEEEEecCCC
Q 001024 376 -CEKLMLEEFLE---RPPLDS-RSILLSVEIPCWD 405 (1185)
Q Consensus 376 -~R~vpl~dF~~---~~~l~~-~EiI~~I~iP~~~ 405 (1185)
.++++-+|.-- ...++. +.||+++.+...+
T Consensus 159 ~~~~~~~~e~~f~YR~S~f~~~~~iIl~a~f~L~~ 193 (302)
T PRK14650 159 KTICKKFKKEEFKYKISPFQNKNTFILKATLNLKK 193 (302)
T ss_pred CEEEEEHHHcCcccccccCCCCCEEEEEEEEEEcC
Confidence 56777777432 223443 4588888876543
No 56
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=94.88 E-value=0.14 Score=63.52 Aligned_cols=157 Identities=15% Similarity=0.271 Sum_probs=91.7
Q ss_pred CcEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEcCCeEEecccccHHHHH
Q 001024 223 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAI 302 (1185)
Q Consensus 223 ~~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~ 302 (1185)
.-.+++|+|.+|+.++++.... ++...+++++|.+..-.- .....+||++++..+-.|..+...++++|++++.+|.
T Consensus 97 p~~vv~P~S~eEV~~iV~~A~~-~g~~VrvvGsGhS~~~l~--~td~glIdL~~l~~Il~vD~e~~~VtV~AG~~l~~L~ 173 (573)
T PLN02465 97 TRRYHQPESLEELEDIVKEAHE-KGRRIRPVGSGLSPNGLA--FSREGMVNLALMDKVLEVDKEKKRVTVQAGARVQQVV 173 (573)
T ss_pred CCEEEEeCCHHHHHHHHHHHHH-cCCcEEEEcCCcCCCCee--eCCCEEEECcCCCCcEEEeCCCCEEEEccCCCHHHHH
Confidence 4568999999999999875321 234688888887642211 1234589998866544445555799999999999999
Q ss_pred HHHHHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCcccccccCCCCCc-hHHHH--HhcCcEEEEEeCCe-eEE
Q 001024 303 EALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSD-VATVL--LGAGAMVNIMTGQK-CEK 378 (1185)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p~~~~sD-~~~~L--lAldA~v~l~s~~g-~R~ 378 (1185)
+.+..+ . | ++...++. +.+||||.|+++.-. +. -...+ ..++ +++...+| ..+
T Consensus 174 ~~L~~~--------G-----L--al~n~g~I---~~~TIGGaIstGtHG---tG~~~g~i~d~V~~--l~lVta~G~vv~ 230 (573)
T PLN02465 174 EALRPH--------G-----L--TLQNYASI---REQQIGGFIQVGAHG---TGARIPPIDEQVVS--MKLVTPAKGTIE 230 (573)
T ss_pred HHHHHc--------C-----C--EeccCCCC---CCeeecchhhCCCCC---cCCCcCcHhheEEE--EEEEECCCCEEE
Confidence 887643 0 1 12222332 467999999765432 11 00111 1233 33444433 445
Q ss_pred Eech---hhcc--CCCCCCCceEEEEEecCCC
Q 001024 379 LMLE---EFLE--RPPLDSRSILLSVEIPCWD 405 (1185)
Q Consensus 379 vpl~---dF~~--~~~l~~~EiI~~I~iP~~~ 405 (1185)
+.-+ |.|. ...+..--||+++.|-..+
T Consensus 231 ~s~~~~pdLF~aar~glG~lGVIteVTLql~P 262 (573)
T PLN02465 231 LSKEDDPELFRLARCGLGGLGVVAEVTLQCVP 262 (573)
T ss_pred ECCCCCHHHHhHhhccCCCCcEEEEEEEEEEe
Confidence 5443 2342 1123333499998886543
No 57
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=94.82 E-value=0.032 Score=67.22 Aligned_cols=105 Identities=13% Similarity=0.124 Sum_probs=69.4
Q ss_pred EecCCHHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEcCCeEEecccccHHHHHHHHH
Q 001024 227 HSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALK 306 (1185)
Q Consensus 227 ~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~~~ 306 (1185)
++|.|.+|+.++++.... .+-...+.+|||.+.--........+||++++...-.|..++..++++|++++.+|.+.+.
T Consensus 2 v~P~s~eev~~iv~~a~~-~~i~v~~~G~Gt~~~g~~~~~~~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l~ 80 (413)
T TIGR00387 2 VFPKNTEQVARILKLCHE-HRIPIVPRGAGTGLSGGALPEEGGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAVE 80 (413)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCcEEEECCCCCCCCCccCCCCeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHHH
Confidence 479999999988773211 1345788899999732000012467889987554434445568999999999999998876
Q ss_pred HhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCcccccc
Q 001024 307 EETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQ 349 (1185)
Q Consensus 307 ~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~ 349 (1185)
.+ ...+| -.+.-...+||||+|++..
T Consensus 81 ~~--------gl~~~---------~~p~s~~~~tiGG~ia~na 106 (413)
T TIGR00387 81 EH--------NLFYP---------PDPSSQISSTIGGNIAENA 106 (413)
T ss_pred Hc--------CCeeC---------CCCcccccceehhhhhcCC
Confidence 53 11111 1344455799999998754
No 58
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=94.79 E-value=0.23 Score=57.28 Aligned_cols=155 Identities=14% Similarity=0.152 Sum_probs=93.5
Q ss_pred CcEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEcCCeEEecccccHHHHH
Q 001024 223 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAI 302 (1185)
Q Consensus 223 ~~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~ 302 (1185)
..-|+.|.|.+|+.++++-... ..-...++.|||.+.+-.. .....+|++++ |+.|+.+++.+++||++++.+|.
T Consensus 37 A~~~v~p~~~edv~~~v~~a~~-~~ip~~vlGgGSNll~~d~-g~~GvvI~l~~---l~~i~~~~~~v~v~aG~~~~~l~ 111 (307)
T PRK13906 37 ADFYITPTKNEEVQAVVKYAYQ-NEIPVTYLGNGSNIIIREG-GIRGIVISLLS---LDHIEVSDDAIIAGSGAAIIDVS 111 (307)
T ss_pred eEEEEEcCCHHHHHHHHHHHHH-cCCCEEEEcCceeEeecCC-CcceEEEEecC---ccceEEeCCEEEEECCCcHHHHH
Confidence 5568999999999988763211 1345788999999865322 23468899866 66777777899999999999998
Q ss_pred HHHHHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCcccccccCCCCCchHHHHHhcCcEEEEEeCCe-eEEEec
Q 001024 303 EALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK-CEKLML 381 (1185)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p~~~~sD~~~~LlAldA~v~l~s~~g-~R~vpl 381 (1185)
+..... .+..|.-. ++. -|||||++.+-... |-.++.=.++ .|++...+| .++++-
T Consensus 112 ~~~~~~----------Gl~GlE~~----~gI----PGtVGGav~mNaGa-yGg~i~D~l~----~v~vv~~~G~~~~~~~ 168 (307)
T PRK13906 112 RVARDY----------ALTGLEFA----CGI----PGSIGGAVYMNAGA-YGGEVKDCID----YALCVNEQGSLIKLTT 168 (307)
T ss_pred HHHHHc----------CCccchhh----cCC----CccHhHHHHhhCCc-chhhhhhhee----EEEEEeCCCCEEEEEH
Confidence 876542 11111111 111 36888888765542 1112222222 233344445 566777
Q ss_pred hhhccC---CCCCC-CceEEEEEecCCC
Q 001024 382 EEFLER---PPLDS-RSILLSVEIPCWD 405 (1185)
Q Consensus 382 ~dF~~~---~~l~~-~EiI~~I~iP~~~ 405 (1185)
+|..-+ ..++. +.||+++.+-..+
T Consensus 169 ~e~~f~YR~S~~~~~~~ii~~~~~~l~~ 196 (307)
T PRK13906 169 KELELDYRNSIIQKEHLVVLEAAFTLAP 196 (307)
T ss_pred HHccCcCCcccCCCCCEEEEEEEEEECC
Confidence 763221 23443 3477777775543
No 59
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=94.49 E-value=0.053 Score=67.39 Aligned_cols=107 Identities=14% Similarity=0.141 Sum_probs=72.9
Q ss_pred cEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEcCCeEEecccccHHHHHH
Q 001024 224 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIE 303 (1185)
Q Consensus 224 ~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~ 303 (1185)
...++|+|.+|+.++++.... .+-...+.+|||++.-.........+||++++..+..|..++..++++|++++.+|.+
T Consensus 135 ~~Vv~P~s~eeV~~ivk~a~~-~~ipv~prGgGts~~G~~~~~~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~L~~ 213 (555)
T PLN02805 135 DVVVFPRSEEEVSKIVKSCNK-YKVPIVPYGGATSIEGHTLAPHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLELNE 213 (555)
T ss_pred CEEEEcCCHHHHHHHHHHHHH-CCCcEEEECCCCCCCCCccCCCCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHHHHH
Confidence 457899999999988773211 1335678899999842110012368999998776666667778999999999999999
Q ss_pred HHHHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCccccccc
Q 001024 304 ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 350 (1185)
Q Consensus 304 ~~~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p 350 (1185)
.+..+ ...+|.. .+ ..+||||+|++...
T Consensus 214 ~L~~~--------Gl~~p~~-------p~----~~~TIGG~ia~n~~ 241 (555)
T PLN02805 214 YLEPY--------GLFFPLD-------PG----PGATIGGMCATRCS 241 (555)
T ss_pred HHHHc--------CCEeCCC-------Cc----cccChhhHhhCCCc
Confidence 87753 1122211 11 34899999987743
No 60
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=94.37 E-value=0.14 Score=58.44 Aligned_cols=159 Identities=14% Similarity=0.192 Sum_probs=90.9
Q ss_pred ccccC-CcEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEcCCeEEecccc
Q 001024 218 MLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATV 296 (1185)
Q Consensus 218 ~~~~~-~~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~v 296 (1185)
+.+++ ...|+.|+|.+|+.++++-... .+-...+++|||.+.+... .....+|++.+.. +.+..++..+++||++
T Consensus 7 ~~igg~a~~~v~p~s~edl~~~l~~a~~-~~~p~~vlGgGSNll~~d~-~~~gvvi~l~~~~--~~~~~~~~~v~v~aG~ 82 (284)
T TIGR00179 7 YKIGGNARHIVCPESIEQLVNVLDNAKE-EDQPLLILGEGSNLLILDD-GRGGVIINLGKGI--DIEDDEGEYVHVGGGE 82 (284)
T ss_pred eecCceeeEEEEeCCHHHHHHHHHHHHH-cCCCEEEEecceEEEEccC-CcCeEEEECCCCc--eEEEecCCEEEEEcCC
Confidence 34445 5679999999999998863211 2346789999999865332 2346889987643 2233335789999999
Q ss_pred cHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCcccccccCCCCCchHHHHHhcCcEEEEEeCCe-
Q 001024 297 TISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK- 375 (1185)
Q Consensus 297 Tl~~l~~~~~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p~~~~sD~~~~LlAldA~v~l~s~~g- 375 (1185)
++.+|.+..... -+.. +...++.+ |||||++++-... |-.++.-.| + .|++...+|
T Consensus 83 ~~~~l~~~~~~~----------Gl~G----lE~l~giP----GtvGGai~mNAGa-yG~~i~d~l--~--~v~vv~~~G~ 139 (284)
T TIGR00179 83 NWHKLVKYALKN----------GLSG----LEFLAGIP----GTVGGAVIMNAGA-YGVEISEVL--V--YATILLATGK 139 (284)
T ss_pred cHHHHHHHHHHC----------CCcc----cccCCCCC----chHHHHHHHhccc-chhehhheE--E--EEEEEeCCCC
Confidence 999999876542 1111 11222211 4899999765553 111111111 2 233334555
Q ss_pred eEEEechhhcc---CCCCCCC--ceEEEEEecC
Q 001024 376 CEKLMLEEFLE---RPPLDSR--SILLSVEIPC 403 (1185)
Q Consensus 376 ~R~vpl~dF~~---~~~l~~~--EiI~~I~iP~ 403 (1185)
.++++-+|.-- ...++.+ .+|++..+..
T Consensus 140 ~~~~~~~~~~f~YR~S~f~~~~~~iil~a~~~l 172 (284)
T TIGR00179 140 TEWLTNEQLGFGYRTSIFQHKYVGLVLKAEFQL 172 (284)
T ss_pred EEEEEHHHccccCCccccCCCCcEEEEEEEEEe
Confidence 46667666321 1233332 3666665543
No 61
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=94.29 E-value=0.083 Score=64.01 Aligned_cols=106 Identities=20% Similarity=0.263 Sum_probs=71.0
Q ss_pred cEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEcCCeEEecccccHHHHHH
Q 001024 224 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIE 303 (1185)
Q Consensus 224 ~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~ 303 (1185)
...++|+|.+|+.++++.... .+...++++||++..-.- .....+||++++..+-.|..+.+.++++|++++.+|.+
T Consensus 16 ~~v~~P~s~eev~~iv~~A~~-~~~~v~v~G~GhS~s~~~--~~~gvvIdl~~l~~i~~id~~~~~vtV~aG~~l~~L~~ 92 (438)
T TIGR01678 16 EVYYQPTSVEEVREVLALARE-QKKKVKVVGGGHSPSDIA--CTDGFLIHLDKMNKVLQFDKEKKQITVEAGIRLYQLHE 92 (438)
T ss_pred CEEEecCCHHHHHHHHHHHHH-CCCeEEEECCCCCCCCCc--cCCeEEEEhhhcCCceEEcCCCCEEEEcCCCCHHHHHH
Confidence 468999999999998874321 134578889997653211 12368999988665544555557999999999999988
Q ss_pred HHHHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCccccccc
Q 001024 304 ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 350 (1185)
Q Consensus 304 ~~~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p 350 (1185)
.+... . +. +...++. +..||||.|+++.-
T Consensus 93 ~L~~~---------G----l~--l~~~g~~---~~~TvGG~iatg~h 121 (438)
T TIGR01678 93 QLDEH---------G----YS--MSNLGSI---SEVSVAGIISTGTH 121 (438)
T ss_pred HHHHc---------C----CE--ecCCCCC---CCceeeehhcCCCC
Confidence 76642 0 10 1122322 45899998876654
No 62
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=94.00 E-value=0.062 Score=65.29 Aligned_cols=111 Identities=19% Similarity=0.083 Sum_probs=72.9
Q ss_pred CcEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCccccc--ccc---cCCCCeeEeCCCCCCCCceEEcCCeEEeccccc
Q 001024 223 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGY--YKE---VEHYDKYIDIRYIPELSVIRRDQTGIEIGATVT 297 (1185)
Q Consensus 223 ~~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~--~k~---~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT 297 (1185)
..-.+.|.|.+|..++++--.. .+-...+-+|||+|.= ... ..+..++||+.++..+..|. ++..+.+.++||
T Consensus 39 P~AVV~P~SteEVa~IVklC~e-~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePGVt 116 (564)
T PRK11183 39 ALAVVFPGTLLELWRVLQACVA-ADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPGTT 116 (564)
T ss_pred CCEEEecCCHHHHHHHHHHHHH-cCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCCCc
Confidence 4568999999999998873210 1223455699999822 211 12346899999877666666 456899999999
Q ss_pred HHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCcccccccC
Q 001024 298 ISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRK 351 (1185)
Q Consensus 298 l~~l~~~~~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p~ 351 (1185)
+.+|.+.+... ..+|.. .++|.+|- +||||||++.+..
T Consensus 117 l~~LeeaLk~~---------Gl~p~s-----d~GSS~IG--asIGGnIAtNAGG 154 (564)
T PRK11183 117 LYQLEKALKPL---------GREPHS-----VIGSSCIG--ASVIGGICNNSGG 154 (564)
T ss_pred HHHHHHHHHHh---------CCCCCC-----cccccccC--CCCccceEECCcc
Confidence 99999987753 112111 12443332 4999999988763
No 63
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=93.71 E-value=0.15 Score=61.67 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=71.2
Q ss_pred cEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEcCCeEEecccccHHHHHH
Q 001024 224 GSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIE 303 (1185)
Q Consensus 224 ~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~ 303 (1185)
...++|+|.+|+.++++.. ....++++||++..-.- .....+||++++..+-.+..+.+.++++|++++.+|.+
T Consensus 13 ~~v~~P~s~~ev~~~v~~a----~~~v~~~G~Ghs~~~~~--~~~g~~idl~~l~~i~~~d~~~~~v~v~aG~~l~~l~~ 86 (419)
T TIGR01679 13 SAIVRPTDEGELADVIAQA----AKPVRAVGSGHSFTDLA--CTDGTMISLTGLQGVVDVDQPTGLATVEAGTRLGALGP 86 (419)
T ss_pred CeEECCCCHHHHHHHHHHh----CCCEEEEeCCCCCCCcc--cCCCEEEEhhHcCCceeecCCCCEEEEcCCCCHHHHHH
Confidence 4689999999999998853 23588889987764321 12358999988665444555578999999999999998
Q ss_pred HHHHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCccccccc
Q 001024 304 ALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 350 (1185)
Q Consensus 304 ~~~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p 350 (1185)
.+... ...+| ..++ + +..||||.|++..-
T Consensus 87 ~L~~~--------G~~l~-------~~~~--~-~~~tvGG~ia~~~h 115 (419)
T TIGR01679 87 QLAQR--------GLGLE-------NQGD--I-DPQSIGGALGTATH 115 (419)
T ss_pred HHHHc--------CCccc-------cCCC--C-CCceeccceecCCC
Confidence 77643 11111 1222 2 34799999987543
No 64
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=93.53 E-value=0.36 Score=60.12 Aligned_cols=161 Identities=11% Similarity=0.082 Sum_probs=89.7
Q ss_pred CcEEEecCCHHHHHHHHHhhcCCCCCCcEEEeC-Ccccccccc-cCCC-CeeEeCCCCCCCCceEEcCCeEEecccccHH
Q 001024 223 KGSWHSPISVQELRNVLESVEGSNQISSKLVAG-NTGMGYYKE-VEHY-DKYIDIRYIPELSVIRRDQTGIEIGATVTIS 299 (1185)
Q Consensus 223 ~~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaG-gT~l~~~k~-~~~~-~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~ 299 (1185)
...+++|+|.+|+.++++.... .+...++++| |.++.-+-. .... ..+||++++..+-.|..+...++++|++++.
T Consensus 32 p~~vv~P~s~eeV~~iV~~A~~-~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVtV~AG~~l~ 110 (557)
T TIGR01677 32 AANVAYPKTEAELVSVVAAATA-AGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVTVESGMSLR 110 (557)
T ss_pred CCEEEecCCHHHHHHHHHHHHH-CCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEEECCCCcHH
Confidence 3468999999999999874321 1234566654 333321111 1112 3899999876554556666799999999999
Q ss_pred HHHHHHHHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCcccccccCCCCCch-----HHHHHhcCcEEEEEeC-
Q 001024 300 KAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDV-----ATVLLGAGAMVNIMTG- 373 (1185)
Q Consensus 300 ~l~~~~~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p~~~~sD~-----~~~LlAldA~v~l~s~- 373 (1185)
+|.+.+... ...++. .++ +- ..||||.|+++.-. +.+ ...=..++.+|++.++
T Consensus 111 ~L~~~L~~~--------Glal~~-------~~~--~~-~~TVGGaiatGthG---s~~~~~~G~l~d~V~~l~vV~a~G~ 169 (557)
T TIGR01677 111 ELIVEAEKA--------GLALPY-------APY--WW-GLTVGGMMGTGAHG---SSLWGKGSAVHDYVVGIRLVVPASA 169 (557)
T ss_pred HHHHHHHHc--------CCEecc-------CCC--CC-CeEeeEhhhCCCCC---ccccccccchhheEEEEEEEeCCCc
Confidence 999887643 111111 111 22 25999999866432 111 1112234445544332
Q ss_pred -Ce---eEEEech---hhccC--CCCCCCceEEEEEecCCC
Q 001024 374 -QK---CEKLMLE---EFLER--PPLDSRSILLSVEIPCWD 405 (1185)
Q Consensus 374 -~g---~R~vpl~---dF~~~--~~l~~~EiI~~I~iP~~~ 405 (1185)
+| .+++.-. |.|.. ..+..=-||+++.+...+
T Consensus 170 a~G~~~v~~~s~~~~~dLf~a~rgslG~lGVVtevTL~~~P 210 (557)
T TIGR01677 170 AEGFAKVRILSEGDTPNEFNAAKVSLGVLGVISQVTLALQP 210 (557)
T ss_pred ccCcceEEEeCCCCCHHHHHhhccCCCccEeeeEEEEEEEc
Confidence 12 2334332 34431 123334489998886543
No 65
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=93.20 E-value=0.62 Score=53.76 Aligned_cols=155 Identities=14% Similarity=0.174 Sum_probs=91.2
Q ss_pred CcEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEcCCeEEecccccHHHHH
Q 001024 223 KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAI 302 (1185)
Q Consensus 223 ~~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~ 302 (1185)
..-++.|.|.+|+.++++-... ..-...++.|||.+.+-.. .....+|++++ |+.|+.+++.+++||++++.+|.
T Consensus 37 a~~vv~p~~~edv~~~l~~a~~-~~ip~~v~GgGSNll~~d~-g~~GvvI~l~~---l~~i~~~~~~v~v~aG~~~~~L~ 111 (305)
T PRK12436 37 ADVFVAPTNYDEIQEVIKYANK-YNIPVTFLGNGSNVIIKDG-GIRGITVSLIH---ITGVTVTGTTIVAQCGAAIIDVS 111 (305)
T ss_pred EEEEEecCCHHHHHHHHHHHHH-cCCCEEEEcCCeEEEEeCC-CeeEEEEEeCC---cCcEEEeCCEEEEEeCCcHHHHH
Confidence 4568899999999988852211 2345788999999864322 23467899875 55677778899999999999998
Q ss_pred HHHHHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCcccccccCCCCCchHHHHHhcCcEEEEEeCCe-eEEEec
Q 001024 303 EALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQK-CEKLML 381 (1185)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p~~~~sD~~~~LlAldA~v~l~s~~g-~R~vpl 381 (1185)
+.+... .+..|. ..+ ---+||||++.+.... |-.++.=+ +. .+++...+| .++++-
T Consensus 112 ~~~~~~----------gl~Gle----~~~----giPGtVGGav~~NAGa-yG~~~~dv---l~-~v~vv~~~G~v~~~~~ 168 (305)
T PRK12436 112 RIALDH----------NLTGLE----FAC----GIPGSVGGALYMNAGA-YGGEISFV---LT-EAVVMTGDGELRTLTK 168 (305)
T ss_pred HHHHHc----------CCccch----hhc----CCccchhHHHHhcCcc-chhehhee---ee-EEEEEeCCCCEEEEEH
Confidence 876642 011111 111 1246899999755442 11111111 11 223333445 566777
Q ss_pred hhhcc---CCCCCC-CceEEEEEecCCC
Q 001024 382 EEFLE---RPPLDS-RSILLSVEIPCWD 405 (1185)
Q Consensus 382 ~dF~~---~~~l~~-~EiI~~I~iP~~~ 405 (1185)
+|..- ...++. ..||+++.+....
T Consensus 169 ~e~~f~YR~s~~~~~~~iil~a~~~l~~ 196 (305)
T PRK12436 169 EAFEFGYRKSVFANNHYIILEARFELEE 196 (305)
T ss_pred HHhcCcCCCCcCCCCCEEEEEEEEEEcC
Confidence 76332 123333 2367777665543
No 66
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=92.87 E-value=0.09 Score=67.85 Aligned_cols=65 Identities=23% Similarity=0.309 Sum_probs=51.7
Q ss_pred cccc-CCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEecCCCCCCCCCcHHHHHHHhccCCCCCCCCch
Q 001024 32 VVVK-ASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPG 110 (1185)
Q Consensus 32 ~gC~-~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEg~~~~~~~~h~iq~a~~~~~~~qCG~CtPG 110 (1185)
.+|. .|.|+.|.|.| +|+++.||.+|+. +|+.|.|-..-- ...-+.+++.+...|--+|+.|..+
T Consensus 37 ~~~~~~G~Cr~C~VeV----------~G~~~~AC~t~v~--dGM~V~T~s~~v--~~~Rk~vle~ll~~HpldC~~Cd~~ 102 (819)
T PRK08493 37 SGCSPTLACRLCMVEA----------DGKRVYSCNTKAK--EGMNILTNTPNL--MDERNAIMQTYDVNHPLECGVCDKS 102 (819)
T ss_pred CCCCCCccccceEEEE----------CCEEeccccCCCC--CCCEEEecCHHH--HHHHHHHHHHHHhccCCCCCcCCCC
Confidence 4665 59999999999 7888999999984 999999942110 1234678899999999999999865
No 67
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=92.50 E-value=0.95 Score=52.74 Aligned_cols=84 Identities=11% Similarity=0.106 Sum_probs=59.0
Q ss_pred cccccC-CcEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEE---cCC--eE
Q 001024 217 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRR---DQT--GI 290 (1185)
Q Consensus 217 ~~~~~~-~~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~---~~~--~l 290 (1185)
++.+.+ .-.|+.|.|.+|+.++++-... ..-...+|.||+-|.+-. ..+..+|-+ + ++.|+. +++ .+
T Consensus 14 t~riGG~A~~~~~p~~~~el~~~~~~~~~-~~~p~~vlG~GSNlLv~D--~~~g~vI~~-~---~~~~~~~~~~~~~~~v 86 (334)
T PRK00046 14 TFGIDARARHLVEAESEEQLLEALADARA-AGLPVLVLGGGSNVLFTE--DFDGTVLLN-R---IKGIEVLSEDDDAWYL 86 (334)
T ss_pred eeccCcEEeEEEeeCCHHHHHHHHHHHHH-cCCCEEEEeceEEEEECC--CCCEEEEEe-c---CCceEEEecCCCeEEE
Confidence 455666 5678899999999998874321 134578899999986633 245667765 3 444544 333 69
Q ss_pred EecccccHHHHHHHHHH
Q 001024 291 EIGATVTISKAIEALKE 307 (1185)
Q Consensus 291 ~IGA~vTl~~l~~~~~~ 307 (1185)
++||++.+.+|.....+
T Consensus 87 ~a~AG~~~~~l~~~~~~ 103 (334)
T PRK00046 87 HVGAGENWHDLVLWTLQ 103 (334)
T ss_pred EEEcCCcHHHHHHHHHH
Confidence 99999999999987664
No 68
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=92.29 E-value=0.18 Score=46.50 Aligned_cols=37 Identities=19% Similarity=0.452 Sum_probs=26.2
Q ss_pred cccccCCCCCccEEEEcccCCCcCCCCCee-ccchHhhhHhcCCCEEEEe
Q 001024 31 SVVVKASGCGACVVLLSKYNPELDQLEDFT-ISSCLTLLCSVNGCLITTS 79 (1185)
Q Consensus 31 k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~-v~sCl~~~~~~~g~~i~Tv 79 (1185)
..-|..|.|+.|.|.+ ++++ +.||.+++. +|+.|.|-
T Consensus 43 ~~~~~~g~C~~C~Vev----------~g~~~v~AC~t~v~--~GM~V~T~ 80 (82)
T PF13510_consen 43 GGLCPIGSCRLCLVEV----------DGEPNVRACSTPVE--DGMVVETQ 80 (82)
T ss_dssp BSSSSSTT-SS-EEEE----------SSEEEEETTT-B----TTEEEE--
T ss_pred cccCCccccceEEEEE----------CCCcceEcccCCCc--CCcEEEEe
Confidence 4568889999999999 6777 999999975 79999873
No 69
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=91.78 E-value=0.49 Score=54.29 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=75.1
Q ss_pred cccccC-CcEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEcCCeEEeccc
Q 001024 217 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGAT 295 (1185)
Q Consensus 217 ~~~~~~-~~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~ 295 (1185)
++.+.+ ..-|+.|+|.+|+.++++-.. ++-...++.|||.|.+-.. ..+..+|.+++ |+.|+.+++.+++||+
T Consensus 27 t~~iGG~A~~~v~p~s~eel~~~~~~~~--~~~p~~vlG~GSNlLv~d~-g~~gvVI~l~~---~~~i~i~~~~v~v~AG 100 (297)
T PRK14653 27 SFKIGGPVPLFAIPNSTNGFIETINLLK--EGIEVKILGNGTNVLPKDE-PMDFVVVSTER---LDDIFVDNDKIICESG 100 (297)
T ss_pred EeeeCcEEEEEEecCCHHHHHHHHHHHh--cCCCEEEEcCCeeEEEecC-CccEEEEEeCC---cCceEEeCCEEEEeCC
Confidence 455666 567899999999999886331 1335778999999866333 23467888755 5677767789999999
Q ss_pred ccHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCccccccc
Q 001024 296 VTISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 350 (1185)
Q Consensus 296 vTl~~l~~~~~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p 350 (1185)
+++.+|....... .+.. ++.++.. =|||||++++-..
T Consensus 101 ~~l~~L~~~~~~~----------GL~G----lE~l~gI----PGTVGGAv~mNAG 137 (297)
T PRK14653 101 LSLKKLCLVAAKN----------GLSG----FENAYGI----PGSVGGAVYMNAG 137 (297)
T ss_pred CcHHHHHHHHHHC----------CCcc----hhhhcCC----chhHHHHHHHhCc
Confidence 9999999876643 1111 2223332 4779998866554
No 70
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=91.52 E-value=0.82 Score=53.91 Aligned_cols=85 Identities=8% Similarity=0.062 Sum_probs=61.5
Q ss_pred cccccC-CcEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEc--CCeEEec
Q 001024 217 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRD--QTGIEIG 293 (1185)
Q Consensus 217 ~~~~~~-~~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~--~~~l~IG 293 (1185)
++.+.+ ...|+.|.|.+|+.++++.... +.-...++.||+.+.+-.. ..+..+|+++. +.|+.+ ++.|++|
T Consensus 26 t~~iGg~A~~~~~p~s~edl~~~l~~a~~-~~~p~~vlGgGSNlLv~D~-g~~GvVI~l~~----~~i~i~~~~~~v~vg 99 (363)
T PRK13903 26 TLRVGGPARRLVTCTSTEELVAAVRELDA-AGEPLLVLGGGSNLVIADD-GFDGTVVRVAT----RGVTVDCGGGLVRAE 99 (363)
T ss_pred EeecCccceEEEEeCCHHHHHHHHHHHHH-CCCCEEEEeCCeeEeECCC-CccEEEEEeCC----CcEEEeCCCCEEEEE
Confidence 455666 5568899999999998863221 2346888999999864332 34568898863 555555 6789999
Q ss_pred ccccHHHHHHHHHH
Q 001024 294 ATVTISKAIEALKE 307 (1185)
Q Consensus 294 A~vTl~~l~~~~~~ 307 (1185)
|++++.++......
T Consensus 100 AG~~~~~l~~~a~~ 113 (363)
T PRK13903 100 AGAVWDDVVARTVE 113 (363)
T ss_pred cCCCHHHHHHHHHH
Confidence 99999999887654
No 71
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=90.12 E-value=2.9 Score=47.59 Aligned_cols=159 Identities=17% Similarity=0.196 Sum_probs=98.3
Q ss_pred ccccC-CcEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEcCCeEEecccc
Q 001024 218 MLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATV 296 (1185)
Q Consensus 218 ~~~~~-~~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~v 296 (1185)
..+.+ ...|+.|++.+|+.++++.... ..-...++.||+-+.+... ....++|.+.... ...++..++.|++||+.
T Consensus 15 friGg~A~~~~~~~~~e~l~~~~~~~~~-~~~p~~ilG~GSNlLv~d~-g~~gvvi~~~~~~-~~~~~~~~~~i~a~aG~ 91 (291)
T COG0812 15 FRIGGPAEVLVEPRDIEELKAALKYAKA-EDLPVLILGGGSNLLVRDG-GIGGVVIKLGKLN-FIEIEGDDGLIEAGAGA 91 (291)
T ss_pred EecCcceeEEEecCCHHHHHHHHHhhhh-cCCCEEEEecCceEEEecC-CCceEEEEccccc-ceeeeccCCeEEEccCC
Confidence 44555 5679999999999998875421 1345788888888766443 2334555554432 12333444499999999
Q ss_pred cHHHHHHHHHHhhhhhhhhhHhhHHHHHHHH---HhhhchhhhcccccCCcccccccCCCCCchHHHHHhcCcEEEEEeC
Q 001024 297 TISKAIEALKEETKEFHSEALMVFKKIAGHM---EKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTG 373 (1185)
Q Consensus 297 Tl~~l~~~~~~~~~~~~~~~~~~~p~L~~~~---~~ias~qIRN~aTiGGNI~~a~p~~~~sD~~~~LlAldA~v~l~s~ 373 (1185)
.+.+|....... .+..|--++ ..+|+-.+-|.|+-|+.|. |.+. +|++...
T Consensus 92 ~~~~l~~~~~~~----------gl~GlE~l~gIPGsvGgav~mNaGAyG~Ei~---------d~~~-------~v~~ld~ 145 (291)
T COG0812 92 PWHDLVRFALEN----------GLSGLEFLAGIPGSVGGAVIMNAGAYGVEIS---------DVLV-------SVEVLDR 145 (291)
T ss_pred cHHHHHHHHHHc----------CCcchhhhcCCCcccchhhhccCcccccchh---------eeEE-------EEEEEcC
Confidence 999998876543 233332222 3456666666666655543 2221 3555555
Q ss_pred Ce-eEEEechhhc-c--CCCCCCC-ceEEEEEecCCC
Q 001024 374 QK-CEKLMLEEFL-E--RPPLDSR-SILLSVEIPCWD 405 (1185)
Q Consensus 374 ~g-~R~vpl~dF~-~--~~~l~~~-EiI~~I~iP~~~ 405 (1185)
+| .++++.+|.- . ...++.. -+|+++.+....
T Consensus 146 ~G~~~~l~~~el~f~YR~S~f~~~~~vvl~v~f~L~~ 182 (291)
T COG0812 146 DGEVRWLSAEELGFGYRTSPFKKEYLVVLSVEFKLTK 182 (291)
T ss_pred CCCEEEEEHHHhCcccccCcCCCCCEEEEEEEEEeCC
Confidence 66 7889988732 2 2234434 789998887654
No 72
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=89.68 E-value=0.26 Score=62.93 Aligned_cols=57 Identities=23% Similarity=0.474 Sum_probs=40.2
Q ss_pred ccCCCCCccEEEEcccCCCcCCCCC--eeccchHhhhHhcCCCEEEEecCCCCCCCCCcHHHHHHHhccCCC-CCCCC
Q 001024 34 VKASGCGACVVLLSKYNPELDQLED--FTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQ-CGFCT 108 (1185)
Q Consensus 34 C~~G~CGaCtV~~~~~~~~~~~~~~--~~v~sCl~~~~~~~g~~i~TvEg~~~~~~~~h~iq~a~~~~~~~q-CG~Ct 108 (1185)
|..|.|+.|.|.| ++ +.+.||.+++ -+|+.|.| . +..+..+|+...+.-.++ |++|.
T Consensus 42 ~~~g~C~~C~V~v----------~g~~~~~~aC~t~~--~~Gm~v~t----~--~~~~~~~r~~~le~l~~~~c~~C~ 101 (652)
T PRK12814 42 EATGSCWMCIVEI----------KGKNRFVPACSTAV--SEGMVIET----E--NAELHAMRRQSLERLIEQHCGDCL 101 (652)
T ss_pred CCccccceeEEEE----------CCCcceecCcCCCC--CCCCEEEe----C--cHHHHHHHHHHHHHHHhhcccccC
Confidence 4579999999999 33 3589999998 48999999 2 346666774433332222 88885
No 73
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=89.55 E-value=0.24 Score=45.19 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=26.7
Q ss_pred ccccccCCCCCccEEEEcccCCC--------cCCCCCeeccchHhhh
Q 001024 30 SSVVVKASGCGACVVLLSKYNPE--------LDQLEDFTISSCLTLL 68 (1185)
Q Consensus 30 ~k~gC~~G~CGaCtV~~~~~~~~--------~~~~~~~~v~sCl~~~ 68 (1185)
...+|+.|.||+|.|.|.+-+.. ........+.+|.+.+
T Consensus 31 ~~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~ 77 (84)
T cd00207 31 IPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRV 77 (84)
T ss_pred cccCCCCcCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCee
Confidence 47899999999999999642221 1112355678888766
No 74
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=89.38 E-value=2.7 Score=47.67 Aligned_cols=154 Identities=14% Similarity=0.134 Sum_probs=91.0
Q ss_pred cccccCCcEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEcCCeEEecccc
Q 001024 217 AMLLDVKGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATV 296 (1185)
Q Consensus 217 ~~~~~~~~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~v 296 (1185)
++.+.+.-+|+.|.|.+|+.+++. ....++.||+-+.+-.. ..+..+|-+++ .+..++.++ ++||++
T Consensus 14 t~riGG~A~~~~p~~~~~l~~~~~-------~p~~vlG~GSNlL~~D~-g~~g~vI~l~~--~~~~~~~~~---~a~AG~ 80 (273)
T PRK14651 14 TLGVGGPAELWTVETHEQLAEATE-------APYRVLGGGSNLLVSDA-GVPERVIRLGG--EFAEWDLDG---WVGGGV 80 (273)
T ss_pred EeecCceEEEEecCCHHHHHHHHC-------CCeEEEeceeEEEEcCC-CcceEEEEECC--cceeEeECC---EEECCC
Confidence 455666445545999999999885 35788999998865333 23466777643 255565443 799999
Q ss_pred cHHHHHHHHHHhhhhhhhhhHhhHHHHHHHHHhhhchhhhcccccCCcccccccCCCCCchHHHHHhcCcEEEEEeCCee
Q 001024 297 TISKAIEALKEETKEFHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQRKHFPSDVATVLLGAGAMVNIMTGQKC 376 (1185)
Q Consensus 297 Tl~~l~~~~~~~~~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p~~~~sD~~~~LlAldA~v~l~s~~g~ 376 (1185)
.+.+|....... .+.. ++.+++.+ |||||-+.+-..+ |-.++.-.+.. |++...+..
T Consensus 81 ~~~~l~~~~~~~----------gl~G----lE~l~gIP----GTVGGAv~mNaGa-yG~ei~d~l~~----V~~~~~g~~ 137 (273)
T PRK14651 81 PLPGLVRRAARL----------GLSG----LEGLVGIP----AQVGGAVKMNAGT-RFGEMADALHT----VEIVHDGGF 137 (273)
T ss_pred cHHHHHHHHHHC----------CCcc----hhhhcCCC----cchhhHHHhhCCc-cccChheeEEE----EEEEECCCE
Confidence 999998876543 1111 12222221 5666666433331 11333333332 233333347
Q ss_pred EEEechhhc-c--CCCCCCCceEEEEEecCCCc
Q 001024 377 EKLMLEEFL-E--RPPLDSRSILLSVEIPCWDL 406 (1185)
Q Consensus 377 R~vpl~dF~-~--~~~l~~~EiI~~I~iP~~~~ 406 (1185)
++++-+|.. . ...++.+.||+++.+...+.
T Consensus 138 ~~~~~~e~~f~YR~S~~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 138 HQYSPDELGFGYRHSGLPPGHVVTRVRLKLRPS 170 (273)
T ss_pred EEEEHHHccccccccCCCCCEEEEEEEEEECCC
Confidence 788888743 2 23455567999998876543
No 75
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=89.23 E-value=0.69 Score=53.14 Aligned_cols=87 Identities=10% Similarity=0.045 Sum_probs=60.9
Q ss_pred cccccC-CcEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEcCC--eEEec
Q 001024 217 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQT--GIEIG 293 (1185)
Q Consensus 217 ~~~~~~-~~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~--~l~IG 293 (1185)
++.+.+ ...|+.|+|.+|+.++++-... ++-...++.||+.+.+... .....+|++++. .+ .+..+++ .+++|
T Consensus 14 t~~iGg~a~~~v~p~~~~dl~~~l~~~~~-~~ip~~vlG~GSNlL~~d~-g~~GvVI~l~~~-~~-~i~~~~~~~~v~v~ 89 (295)
T PRK14649 14 SWRIGGPARYFVEPTTPDEAIAAAAWAEQ-RQLPLFWLGGGSNLLVRDE-GFDGLVARYRGQ-RW-ELHEHGDTAEVWVE 89 (295)
T ss_pred EeeeCceeeEEEEcCCHHHHHHHHHHHHH-CCCCEEEEecceeEEEeCC-CcCeEEEEecCC-Cc-EEEEeCCcEEEEEE
Confidence 455666 5668889999999998763321 2345788999999855333 345678888653 24 4554444 79999
Q ss_pred ccccHHHHHHHHHH
Q 001024 294 ATVTISKAIEALKE 307 (1185)
Q Consensus 294 A~vTl~~l~~~~~~ 307 (1185)
|++++.++......
T Consensus 90 AG~~~~~l~~~~~~ 103 (295)
T PRK14649 90 AGAPMAGTARRLAA 103 (295)
T ss_pred cCCcHHHHHHHHHH
Confidence 99999999887654
No 76
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=89.11 E-value=0.9 Score=53.06 Aligned_cols=88 Identities=18% Similarity=0.300 Sum_probs=60.1
Q ss_pred cccccC-CcEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceE--EcC-CeEEe
Q 001024 217 AMLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIR--RDQ-TGIEI 292 (1185)
Q Consensus 217 ~~~~~~-~~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~--~~~-~~l~I 292 (1185)
++.+.+ ...|+.|.|.+|+.++++.... ..-...++.||+-+.+-.. ..+..+|.+.++.++. |. .++ ..|++
T Consensus 23 T~rIGG~A~~~~~p~s~~el~~~l~~~~~-~~~p~~iLG~GSNlL~~D~-g~~G~VI~l~~~~~i~-i~~~~~~~~~v~a 99 (354)
T PRK14648 23 SFRIGGAAQFWAEPRSCTQLRALIEEAQR-ARIPLSLIGGGSNVLIADE-GVPGLMLSLRRFRSLH-TQTQRDGSVLVHA 99 (354)
T ss_pred eeeeCcEEEEEEeeCCHHHHHHHHHHHHH-cCCCEEEEeceeEEEEeCC-CccEEEEEeCCcCceE-EeeccCCcEEEEE
Confidence 455666 6679999999999998874321 1335778889888865433 3457788875544442 11 233 36999
Q ss_pred cccccHHHHHHHHHH
Q 001024 293 GATVTISKAIEALKE 307 (1185)
Q Consensus 293 GA~vTl~~l~~~~~~ 307 (1185)
||++.+.+|......
T Consensus 100 gAG~~~~~Lv~~~~~ 114 (354)
T PRK14648 100 GAGLPVAALLAFCAH 114 (354)
T ss_pred EeCCcHHHHHHHHHH
Confidence 999999999887654
No 77
>TIGR03194 4hydrxCoA_A 4-hydroxybenzoyl-CoA reductase, alpha subunit. This model represents the largest chain, alpha, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=88.31 E-value=2.5 Score=54.92 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=47.9
Q ss_pred cCCCceEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEEcc------cCCCCCCCCc
Q 001024 769 METQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVITRR------VGGAFGGKAI 827 (1185)
Q Consensus 769 mEp~~avA~~~~dg~l~V~~sTQ~p-----~~~r~~vA~~Lglp~~kV~V~~~~------vGGgFGgK~~ 827 (1185)
..+.++.+..++||.++|+++++.. +.+++.+|+.||+|.++|+|.... -+|.+|++.+
T Consensus 442 ~~~~~a~v~l~~dG~v~v~~g~~e~GqG~~T~~~qiaAe~LGip~d~V~v~~~DT~~~p~~~gt~~Sr~t 511 (746)
T TIGR03194 442 EPHATVALKLDFDGGITLLTGAADIGQGSSTIASQVAAEVLGVRLSRIRVISADSALTPKDNGSYSSRVT 511 (746)
T ss_pred CCCceEEEEEcCCccEEEEEcCCCCCCCHHHHHHHHHHHHhCCCHHhEEEEccCCCCCCCCCCChhHhHH
Confidence 3456778888889999999988765 567899999999999999998654 5777887764
No 78
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=88.23 E-value=1.1 Score=52.84 Aligned_cols=100 Identities=13% Similarity=0.118 Sum_probs=60.8
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEcCCeEEecccccHHHHHHHHHHhhhh
Q 001024 232 VQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEALKEETKE 311 (1185)
Q Consensus 232 l~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~~~~~~~~ 311 (1185)
++|+.++++.... ++-..++.+|||.... .. .....+||++++...-.+..++..++++|++++.+|.+.+..+
T Consensus 4 ~~ev~~~v~~A~~-~~~~v~~~GgGt~~~~-g~-~~~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~--- 77 (352)
T PRK11282 4 SAALLERVRQAAA-DGTPLRIRGGGSKDFY-GR-ALAGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEA--- 77 (352)
T ss_pred HHHHHHHHHHHHH-CCCeEEEECCCCCCCC-CC-CCCCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHc---
Confidence 3455554442111 2345788899986422 11 1234589999876555556667899999999999999887653
Q ss_pred hhhhhHhhHHHHHHHHHhhhchhhhcccccCCccccccc
Q 001024 312 FHSEALMVFKKIAGHMEKIASRFIRNSASVGGNLVMAQR 350 (1185)
Q Consensus 312 ~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a~p 350 (1185)
...+|. --+.....+||||+|++...
T Consensus 78 -----G~~lp~--------~p~~~~~~~TIGG~iatg~~ 103 (352)
T PRK11282 78 -----GQMLPF--------EPPHFGGGATLGGMVAAGLS 103 (352)
T ss_pred -----CCeeCC--------CCCCcCCCcEehhHHhcCCC
Confidence 111111 00112235999999997654
No 79
>PLN02441 cytokinin dehydrogenase
Probab=87.36 E-value=1.3 Score=54.71 Aligned_cols=84 Identities=12% Similarity=0.168 Sum_probs=57.2
Q ss_pred CcEEEecCCHHHHHHHHHhhcC-CCCCCcEEEeCCcccccccccCCCCeeEeCCCCCC------CCceEEcCCeEEeccc
Q 001024 223 KGSWHSPISVQELRNVLESVEG-SNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPE------LSVIRRDQTGIEIGAT 295 (1185)
Q Consensus 223 ~~~~~~P~sl~ea~~ll~~~~~-~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~E------L~~I~~~~~~l~IGA~ 295 (1185)
....++|+|.+|+.++++.... ...-..++.+||+++.-... .....+||++++.. ...+..+...+++||+
T Consensus 65 P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~-~~~GivIdms~Ln~i~~~~~ii~vd~~~~~VtV~aG 143 (525)
T PLN02441 65 PAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQ-APGGVVVDMRSLRGGVRGPPVIVVSGDGPYVDVSGG 143 (525)
T ss_pred CCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCcc-CCCeEEEECCCCCCcCccCceEEEcCCCCEEEEcCC
Confidence 3468999999999998885421 01223566788888742211 22468999998775 2233445678999999
Q ss_pred ccHHHHHHHHHH
Q 001024 296 VTISKAIEALKE 307 (1185)
Q Consensus 296 vTl~~l~~~~~~ 307 (1185)
+++.++.+.+..
T Consensus 144 ~~~~dv~~~l~~ 155 (525)
T PLN02441 144 ELWIDVLKATLK 155 (525)
T ss_pred CCHHHHHHHHHH
Confidence 999999876553
No 80
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=84.83 E-value=0.81 Score=41.29 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=23.0
Q ss_pred HHHHHHHHhhcccccccccccccccccCCCCCccEEEEcc
Q 001024 9 ALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSK 48 (1185)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~ 48 (1185)
+|+.|+... ++ .+..+|+.|.||.|.|.|.+
T Consensus 19 ll~~~~~~~---gi------~i~~~C~~g~Cg~C~v~v~~ 49 (78)
T PF00111_consen 19 LLDALERAG---GI------GIPYSCGGGGCGTCRVRVLE 49 (78)
T ss_dssp HHHHHHHTT---TT------TSTTSSSSSSSSTTEEEEEE
T ss_pred HHHHHHHcC---CC------CcccCCCCCccCCcEEEEee
Confidence 777776421 22 26899999999999999853
No 81
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=82.10 E-value=2.1 Score=47.56 Aligned_cols=63 Identities=16% Similarity=0.406 Sum_probs=45.8
Q ss_pred cccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEecCCCCCCCCCc----HHHHHHHhccCCCCCCCC
Q 001024 33 VVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFH----PIHQRFAGFHASQCGFCT 108 (1185)
Q Consensus 33 gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEg~~~~~~~~h----~iq~a~~~~~~~qCG~Ct 108 (1185)
-|..|.||.|.|.|. | ..+.+.||.+++. +|+.|.|- .+++. -+.+.+...|-.-|.-|.
T Consensus 41 ~~~~G~C~~C~V~v~------g--~~~~~~aC~t~v~--~Gm~v~t~------~~~~~~~rk~~l~~ll~~h~~~C~~C~ 104 (234)
T PRK07569 41 LSDVGACRLCLVEIE------G--SNKLLPACVTPVA--EGMVVQTN------TPRLQEYRRMIVELLFAEGNHVCAVCV 104 (234)
T ss_pred CCCCCccCCcEEEEC------C--CCccccCcCCCCC--CCCEEEEC------CHHHHHHHHHHHHHHHHhccccCcccC
Confidence 355999999999992 1 1235789999976 79999983 22332 355666788999999998
Q ss_pred chH
Q 001024 109 PGM 111 (1185)
Q Consensus 109 PG~ 111 (1185)
.+-
T Consensus 105 ~~g 107 (234)
T PRK07569 105 ANG 107 (234)
T ss_pred CCC
Confidence 754
No 82
>TIGR02416 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large subunit. This model represents the large subunits of group of carbon-monoxide dehydrogenases that include molybdenum as part of the enzymatic cofactor. There are various forms of carbon-monoxide dehydrogenase; Salicibacter pomeroyi DSS-3, for example, has two forms. Note that, at least in some species, the active site Cys is modified with a selenium attached to (rather than replacing) the sulfur atom. This is termed selanylcysteine, and created post-translationally, in contrast to selenocysteine incorporation during translation as for many other selenoproteins.
Probab=80.41 E-value=3 Score=54.35 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=53.3
Q ss_pred CceEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEEc------ccCCCCCCCCccccHHHHHHHHHH
Q 001024 772 QTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVITR------RVGGAFGGKAIKAMPVATACALAA 840 (1185)
Q Consensus 772 ~~avA~~~~dg~l~V~~sTQ~p-----~~~r~~vA~~Lglp~~kV~V~~~------~vGGgFGgK~~~~~~~~~~aAlaA 840 (1185)
..+.+..+.||.++|+++++.. +.+.+.+|+.||+|.++|+|... +-+|.||++.+. ....++-.||
T Consensus 476 ~~a~v~l~~dG~v~v~~g~~e~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~~Sr~t~--~~G~Av~~Aa 553 (770)
T TIGR02416 476 DSCEIRIHPTGSAIARMGTKSQGQGHETTYAQIIATELGIPAEDIMVEEGDTDTAPYGLGTYGSRSTP--VAGAATALAA 553 (770)
T ss_pred ceEEEEECCCceEEEEECCCCCCCCchHHHHHHHHHHHCCCHHHEEEEecCCCCCCCCCCCchhHHHH--HHHHHHHHHH
Confidence 4577778888999999998765 45788999999999999999954 457888888752 2334455566
Q ss_pred HhC
Q 001024 841 YKL 843 (1185)
Q Consensus 841 ~~~ 843 (1185)
.++
T Consensus 554 ~~l 556 (770)
T TIGR02416 554 RKI 556 (770)
T ss_pred HHH
Confidence 665
No 83
>TIGR02965 xanthine_xdhB xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase.
Probab=77.78 E-value=3.2 Score=54.08 Aligned_cols=72 Identities=11% Similarity=0.049 Sum_probs=53.1
Q ss_pred CCCceEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEE------cccCCCCCCCCccccHHHHHHHH
Q 001024 770 ETQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVIT------RRVGGAFGGKAIKAMPVATACAL 838 (1185)
Q Consensus 770 Ep~~avA~~~~dg~l~V~~sTQ~p-----~~~r~~vA~~Lglp~~kV~V~~------~~vGGgFGgK~~~~~~~~~~aAl 838 (1185)
.+..+....++||.++|+++++.. +.+.+.+|+.||+|.++|+|.. +..+|.+|++.+.. ..-++..
T Consensus 446 ~~~~a~v~i~~dG~v~v~~g~~e~GQG~~T~laQIaAe~LGi~~d~V~v~~~DT~~~p~~~gT~gSr~t~~--~g~Av~~ 523 (758)
T TIGR02965 446 NQAGALVHVYTDGSIHLNHGGTEMGQGLNTKVAQVVAEEFQVDIDRVKITATDTDKVPNTSATAASSGSDL--NGMAAQD 523 (758)
T ss_pred CccceEEEEeCCCcEEEEECCCCCCCCHHHHHHHHHHHHhCCCHHHEEEEecCccCCCCCCCCchHHHHHH--HHHHHHH
Confidence 455677778888999999999765 4567889999999999999985 45677888886422 2333444
Q ss_pred HHHhC
Q 001024 839 AAYKL 843 (1185)
Q Consensus 839 aA~~~ 843 (1185)
||.++
T Consensus 524 Aa~~l 528 (758)
T TIGR02965 524 AARQI 528 (758)
T ss_pred HHHHH
Confidence 55554
No 84
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=77.56 E-value=3.9 Score=54.35 Aligned_cols=135 Identities=20% Similarity=0.250 Sum_probs=123.9
Q ss_pred CccccccHHHHHHHHhhcccccccccccccc-cccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEec
Q 001024 2 EKSLRSQALTLLRLCLSSCVITLALRVSSSV-VVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSE 80 (1185)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~-gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvE 80 (1185)
+..++-+||++||.. . ++|+|. ||++|.||||||+| |+++||||++|+.+++|++|+|||
T Consensus 11 ~~~~~~~l~~~LR~~-~--------l~~~k~~~c~~g~CGaCtv~~----------dg~~v~sC~~~~~~~~g~~i~Tie 71 (951)
T TIGR03313 11 ECKLGENVQTLLFNM-G--------MHSVRNSDDGFGFAGSDAILF----------NGVLKNASLLIAAQLEGAEVRTAE 71 (951)
T ss_pred ecCCCCCHHHHHHHC-C--------CCCCcCCCCCcccCCCCEEEE----------CCeEeeHHHHHHHHcCCCEEEecC
Confidence 455778899999984 6 677999 79999999999999 899999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHhccCCCCCCCCchHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHhcCccccCCCChhHH
Q 001024 81 GLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIA 160 (1185)
Q Consensus 81 g~~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~ 160 (1185)
||+. .+.|||||++|+++|++|||||||||||++++||+ ++|+|+ ++||+++|+|||||||||++|+
T Consensus 72 gl~~-~~~~~~~q~af~~~~a~QCG~CtpG~~~~~~~ll~-----~~~~p~-------~~~i~~~l~gnlcrctgy~~i~ 138 (951)
T TIGR03313 72 SLGQ-WNQLSLVQQAMVDVGVVQSGYNDPAAALILTDLLD-----RNTQPN-------RAEIDDALSGLFSRDAGYQQFY 138 (951)
T ss_pred cCCC-CCCCCHHHHHHHHcCCCcCCCChHHHHHHHHHHHh-----cCCCCC-------HHHHHHHHhcceeccCCcHHHH
Confidence 9985 56899999999999999999999999999999994 456774 9999999999999999999999
Q ss_pred HHHHHhhh
Q 001024 161 DACKSFAA 168 (1185)
Q Consensus 161 ~a~~~~~~ 168 (1185)
+|++.++.
T Consensus 139 ~av~~~~~ 146 (951)
T TIGR03313 139 QVIELAVK 146 (951)
T ss_pred HHHHHHHH
Confidence 99998765
No 85
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=77.39 E-value=5.1 Score=53.33 Aligned_cols=136 Identities=16% Similarity=0.201 Sum_probs=125.7
Q ss_pred CccccccHHHHHHHHhhccccccccccccccc-ccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEec
Q 001024 2 EKSLRSQALTLLRLCLSSCVITLALRVSSSVV-VKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSE 80 (1185)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~g-C~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvE 80 (1185)
+..++-+||++||. +. ++|+|.| |++|.||||||+| |+++|+||++|+.+++|++|+|||
T Consensus 15 ~~~~~~~l~~~LR~-~~--------~~~~k~g~c~~g~CGaCtv~~----------dg~~v~sC~~~~~~~~g~~i~Tve 75 (956)
T PRK09800 15 TVNPGENVQKLLFN-MG--------MHSVRNSDDGFGFAGSDAIIF----------NGNIVNASLLIAAQLEKADIRTAE 75 (956)
T ss_pred ecCCCCCHHHHHHH-CC--------CCccccCCCCcccCCCCEEEE----------CCeEEeHHHHHHHHcCCCEEEecC
Confidence 45678899999999 88 8889998 8999999999999 899999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHhccCCCCCCCCchHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHhcCccccCCCChhHH
Q 001024 81 GLGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIA 160 (1185)
Q Consensus 81 g~~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~ 160 (1185)
||+. .+.|||||+||+++|++|||||||||||++++||+ ++++|+ ++||+++|+|||||||||++|+
T Consensus 76 gl~~-~~~~~~~q~af~~~~~~QCG~CtpG~~m~~~~ll~-----~~~~p~-------~~~i~~~l~gnlCRCtgy~~i~ 142 (956)
T PRK09800 76 SLGK-WNELSLVQQAMVDVGVVQSGYNDPAAALIITDLLD-----RIAAPT-------REEIDDALSGLFSRDAGWQQYY 142 (956)
T ss_pred CcCC-CCCCCHHHHHHHHcCCCcCCCChHHHHHHHHHHHh-----cCCCCC-------HHHHHHHHhhchhccCCcHHHH
Confidence 9985 56899999999999999999999999999999994 467774 9999999999999999999999
Q ss_pred HHHHHhhhc
Q 001024 161 DACKSFAAD 169 (1185)
Q Consensus 161 ~a~~~~~~~ 169 (1185)
+|++.++..
T Consensus 143 ~av~~~~~~ 151 (956)
T PRK09800 143 QVIELAVAR 151 (956)
T ss_pred HHHHHHHHh
Confidence 999987653
No 86
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=75.70 E-value=1.7 Score=48.69 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=30.2
Q ss_pred cHHHHHHHHhhcccccccccccccccccCCCCCccEEEE
Q 001024 8 QALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLL 46 (1185)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~ 46 (1185)
+++.-++..+.+.|+-..+..-...+||.|.||+|.|.+
T Consensus 191 ~m~~~v~~~l~~~Gv~~~~~~e~~m~cg~G~C~~C~~~~ 229 (250)
T PRK00054 191 IMMKKVVEILKEKKVPAYVSLERRMKCGIGACGACVCDT 229 (250)
T ss_pred HHHHHHHHHHHHcCCcEEEEEcccccCcCcccCcCCccc
Confidence 455556666666777666677788999999999999987
No 87
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=70.72 E-value=2.4 Score=45.10 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=40.1
Q ss_pred HHHHHHHHhhcccccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHh
Q 001024 9 ALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCS 70 (1185)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~ 70 (1185)
.||-|..+-+.-+-||- .+..|.||-||+|..-+ +|..-.+|+.-+-+
T Consensus 79 vLDALiKIKnE~DptLT----FRRSCREGICGSCAMNI----------~G~NtLACi~kId~ 126 (288)
T KOG3049|consen 79 VLDALIKIKNEMDPTLT----FRRSCREGICGSCAMNI----------NGTNTLACICKIDQ 126 (288)
T ss_pred HHHHHHHhhcccCCcee----hhhhhhccccccceecc----------CCCceeEEEEeecc
Confidence 47888888888899997 78899999999999888 67777888876554
No 88
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=68.52 E-value=4.1 Score=45.22 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=16.7
Q ss_pred ccccccccCCCCCccEEEE
Q 001024 28 VSSSVVVKASGCGACVVLL 46 (1185)
Q Consensus 28 ~~~k~gC~~G~CGaCtV~~ 46 (1185)
...+.+|+.|.||+|+|-.
T Consensus 210 ~~~~m~Cg~G~C~~C~~~~ 228 (243)
T cd06192 210 NNSPMCCGIGICGACTIET 228 (243)
T ss_pred CCccccCccccccceEEEe
Confidence 3478999999999999975
No 89
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=68.28 E-value=8 Score=53.42 Aligned_cols=73 Identities=19% Similarity=0.087 Sum_probs=53.8
Q ss_pred cCCCceEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEEc------ccCCCCCCCCccccHHHHHHH
Q 001024 769 METQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVITR------RVGGAFGGKAIKAMPVATACA 837 (1185)
Q Consensus 769 mEp~~avA~~~~dg~l~V~~sTQ~p-----~~~r~~vA~~Lglp~~kV~V~~~------~vGGgFGgK~~~~~~~~~~aA 837 (1185)
+...++++....||.++|+++++.. +.+.+.+|+.||||.++|+|... .-+|.+|++.+. ....++-
T Consensus 1015 ~~~~~a~v~i~~DGsV~V~~G~~e~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~gSr~t~--~~G~Av~ 1092 (1330)
T TIGR02969 1015 MGQAAALVHIYLDGSVLVTHGGIEMGQGVHTKMIQVVSRELKMPMSNVHLRGTSTETVPNTNASGGSVVAD--LNGLAVK 1092 (1330)
T ss_pred CCCccEEEEEcCCceEEEEECCcCcCCChHHHHHHHHHHHhCCCHHHEEEEcCCCCCCCCCCCCchHHHHH--HHHHHHH
Confidence 4566788888888999999998765 45678999999999999999854 458888888642 2233334
Q ss_pred HHHHhC
Q 001024 838 LAAYKL 843 (1185)
Q Consensus 838 laA~~~ 843 (1185)
.||.++
T Consensus 1093 ~A~~~l 1098 (1330)
T TIGR02969 1093 DACQTL 1098 (1330)
T ss_pred HHHHHH
Confidence 444444
No 90
>PLN02906 xanthine dehydrogenase
Probab=67.57 E-value=9.9 Score=52.54 Aligned_cols=73 Identities=15% Similarity=0.068 Sum_probs=54.5
Q ss_pred cCCCceEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEE------cccCCCCCCCCccccHHHHHHH
Q 001024 769 METQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVIT------RRVGGAFGGKAIKAMPVATACA 837 (1185)
Q Consensus 769 mEp~~avA~~~~dg~l~V~~sTQ~p-----~~~r~~vA~~Lglp~~kV~V~~------~~vGGgFGgK~~~~~~~~~~aA 837 (1185)
+.+..+.+..+.||.++|+++++.. ..+.+.+|+.||+|.++|+|.. +.-+|.+|++.+.. ...++-
T Consensus 1010 ~~~~~a~V~i~~DGsV~V~~G~~e~GQG~~T~~aQiaAe~LGip~d~V~v~~~DT~~~p~~~gT~aSr~t~~--~G~Av~ 1087 (1319)
T PLN02906 1010 MNQAGALVHVYTDGTVLVTHGGVEMGQGLHTKVAQVAASAFNIPLSSVFISETSTDKVPNASPTAASASSDM--YGAAVL 1087 (1319)
T ss_pred CCccceEEEEcCCceEEEEECCccCCCChHHHHHHHHHHHHCCCHHHEEEEccCCCCCCCCCCCccchhhHh--HHHHHH
Confidence 4566788888888999999987554 4567889999999999999985 45678889887532 334445
Q ss_pred HHHHhC
Q 001024 838 LAAYKL 843 (1185)
Q Consensus 838 laA~~~ 843 (1185)
.||.++
T Consensus 1088 ~Aa~~l 1093 (1319)
T PLN02906 1088 DACEQI 1093 (1319)
T ss_pred HHHHHH
Confidence 555555
No 91
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=67.22 E-value=8.2 Score=50.88 Aligned_cols=136 Identities=34% Similarity=0.536 Sum_probs=124.1
Q ss_pred CccccccHHHHHHHHhhcccccccccccccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEecC
Q 001024 2 EKSLRSQALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEG 81 (1185)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEg 81 (1185)
+..++-+||++||.-++ ++|||.||++|.||||||+| |+++|||||+|+.+++|++|+||||
T Consensus 11 ~~~~~~~l~~~lr~~~~--------~~~~k~gc~~g~cgactv~~----------dg~~~~sc~~~~~~~~g~~i~T~eg 72 (848)
T TIGR03311 11 DVNEEKKLLEFLREDLR--------LTGVKNGCGEGACGACTVIV----------NGKAVRACRFTTAKLAGKEITTVEG 72 (848)
T ss_pred eCCCCCcHHHHHHHhcC--------CCcCCCCCCCCCCCCcEEEE----------CCeEEehhhhhHHhcCCCEEEecCC
Confidence 34567788899888877 77899999999999999999 8999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHhccCCCCCCCCchHHHHHHHHHHhccccCCCCCCCCCCCCCHHHHHHHhcCccccCCCChhHHH
Q 001024 82 LGNSKTGFHPIHQRFAGFHASQCGFCTPGMCMSLFSALVDAEKTHRPEPPPGLSKLTISEAEKAIAGNLCRCTGYRPIAD 161 (1185)
Q Consensus 82 ~~~~~~~~h~iq~a~~~~~~~qCG~CtPG~vm~~~~ll~~~~~~~~~~~~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~~ 161 (1185)
|++ .++||||++|+++|++|||||||||||++++||+ ++|+|+ ++||+++|+|||||||||++|++
T Consensus 73 l~~--~~~~~~q~a~~~~~~~qcG~ctpg~~~~~~~ll~-----~~~~p~-------~~~i~~~l~gnlcrctgy~~i~~ 138 (848)
T TIGR03311 73 LTE--REKDVYAWAFAKAGAVQCGFCIPGMVISAKALLD-----KNPNPT-------EAEIKKALKGNICRCTGYVKIIK 138 (848)
T ss_pred CCC--CCCCHHHHHHHHcCCCcCCCCchhHHHHHHHHHh-----cCCCCC-------HHHHHHHHhcCccccCChHHHHH
Confidence 985 3579999999999999999999999999999994 457774 99999999999999999999999
Q ss_pred HHHHhhhc
Q 001024 162 ACKSFAAD 169 (1185)
Q Consensus 162 a~~~~~~~ 169 (1185)
|++.++..
T Consensus 139 a~~~~~~~ 146 (848)
T TIGR03311 139 AVRLAAKA 146 (848)
T ss_pred HHHHHHHh
Confidence 99988654
No 92
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=66.14 E-value=4.7 Score=45.00 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=32.7
Q ss_pred ccHHHHHHHHhhcccccccccccccccccCCCCCccEEEE
Q 001024 7 SQALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLL 46 (1185)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~ 46 (1185)
.++++-++..+...|+...+-.-...+|+.|.||+|+|..
T Consensus 189 ~~m~~~~~~~l~~~Gv~~~~s~e~~m~Cg~G~C~~C~~~~ 228 (248)
T cd06219 189 PIMMKAVSELTRPYGIPTVVSLNPIMVDGTGMCGACRVTV 228 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccccCccceeeeEEEEe
Confidence 3566667777777888887777789999999999999975
No 93
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=65.31 E-value=11 Score=49.29 Aligned_cols=69 Identities=13% Similarity=0.073 Sum_probs=50.6
Q ss_pred ceEEEECCCCc--EEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEE------cccCCCCCCCCccccHHHHHHHHH
Q 001024 773 TALAVPDEDNC--LVVYSSIQCP-----ESAHATIARCLGIPEHNVRVIT------RRVGGAFGGKAIKAMPVATACALA 839 (1185)
Q Consensus 773 ~avA~~~~dg~--l~V~~sTQ~p-----~~~r~~vA~~Lglp~~kV~V~~------~~vGGgFGgK~~~~~~~~~~aAla 839 (1185)
.+.+..+.||. ++|+++++.. ..+.+.+|+.||+|.++|+|.. +.-+|.+|++.+.. ...++-.|
T Consensus 467 ~a~v~l~~dGsv~v~v~~g~~d~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~~Sr~t~~--~G~Av~~A 544 (768)
T TIGR03196 467 GARLELAEDGTVKIRAHFACAECGQGFLAAAEQIAMEELGCAAEDISIAIADTAKGPKAGSSSASRGTSM--SGGAIQGA 544 (768)
T ss_pred cEEEEEeCCCCeEEEEEECCCCcCCCHHHHHHHHHHHHhCCCHHHEEEecCCCCCCCCCCCCchhhhhHh--HHHHHHHH
Confidence 56777777884 8999887655 4567889999999999999985 45688888887533 33344455
Q ss_pred HHhC
Q 001024 840 AYKL 843 (1185)
Q Consensus 840 A~~~ 843 (1185)
|+++
T Consensus 545 a~~l 548 (768)
T TIGR03196 545 CAAF 548 (768)
T ss_pred HHHH
Confidence 5555
No 94
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=60.35 E-value=6.7 Score=36.26 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=16.0
Q ss_pred ccccccCCCCCccEEEEc
Q 001024 30 SSVVVKASGCGACVVLLS 47 (1185)
Q Consensus 30 ~k~gC~~G~CGaCtV~~~ 47 (1185)
...+|+.|.||+|.+-+-
T Consensus 33 ~p~~Cr~G~Cg~C~~~~~ 50 (84)
T PRK10713 33 VEYQCREGYCGSCRTRLV 50 (84)
T ss_pred CCCCCCCeECCCCEeEEE
Confidence 478999999999999883
No 95
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=57.77 E-value=6 Score=44.62 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=26.7
Q ss_pred cHHHHHHHHhhcccccc---cccccccccccCCCCCccEEE
Q 001024 8 QALTLLRLCLSSCVITL---ALRVSSSVVVKASGCGACVVL 45 (1185)
Q Consensus 8 ~~~~~~~~~~~~~~~~~---~~~~~~k~gC~~G~CGaCtV~ 45 (1185)
.++.-++..+.+.|+.- -.-...+..|+.|-||+|+|-
T Consensus 200 ~mv~~~~~~L~~~Gv~~~~i~~~~~~~m~cg~g~c~~c~~~ 240 (261)
T TIGR02911 200 IMMKFTVQELLKKGIKEENIWVSYERKMCCGVGKCGHCKID 240 (261)
T ss_pred HHHHHHHHHHHHcCCCHHHEEEEeccceeccCcCCCCcccC
Confidence 34455556566677642 234568999999999999984
No 96
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=56.80 E-value=7.8 Score=42.77 Aligned_cols=39 Identities=10% Similarity=0.136 Sum_probs=30.4
Q ss_pred cHHHHHHHHhhcccccccccccccccccCCCCCccEEEE
Q 001024 8 QALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLL 46 (1185)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~ 46 (1185)
+++.-++..+.+.++...+..-....|+.|.||+|.|-.
T Consensus 177 ~m~~~~~~~L~~~g~~~~i~~e~f~~cg~g~C~~C~v~~ 215 (233)
T cd06220 177 IMMYKVLEILDERGVRAQFSLERYMKCGIGICGSCCIDP 215 (233)
T ss_pred HHHHHHHHHHHhcCCcEEEEecccccCcCCCcCccEecc
Confidence 455556666677777666667778999999999999977
No 97
>PRK05802 hypothetical protein; Provisional
Probab=52.88 E-value=9.5 Score=44.45 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=26.6
Q ss_pred cHHHHHHHHhhc--ccccccccccccccccCCCCCccEEEE
Q 001024 8 QALTLLRLCLSS--CVITLALRVSSSVVVKASGCGACVVLL 46 (1185)
Q Consensus 8 ~~~~~~~~~~~~--~~~~~~~~~~~k~gC~~G~CGaCtV~~ 46 (1185)
+++.-+...+.+ -+|...+-...+..||.|.||+|+|-.
T Consensus 264 ~M~k~v~~~l~~~~~~i~~~~Sle~~M~CG~G~Cg~C~v~~ 304 (320)
T PRK05802 264 ILHYKIIEYLDKLNEKIKLSCSNNAKMCCGEGICGACTVRY 304 (320)
T ss_pred HHHHHHHHHHhhhcCCceEEEeCCCeeeCcCccCCeeEEEE
Confidence 344444554544 355444445579999999999999987
No 98
>PF02738 Ald_Xan_dh_C2: Molybdopterin-binding domain of aldehyde dehydrogenase; InterPro: IPR008274 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3NVZ_C 3NVY_C 1FO4_B 3NRZ_L 3AM9_A 3B9J_C 3AX7_B 3NVW_L 3BDJ_A 3ETR_N ....
Probab=51.00 E-value=41 Score=42.23 Aligned_cols=57 Identities=26% Similarity=0.345 Sum_probs=39.1
Q ss_pred CCceEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEEc------ccCCCCCCCCc
Q 001024 771 TQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVITR------RVGGAFGGKAI 827 (1185)
Q Consensus 771 p~~avA~~~~dg~l~V~~sTQ~p-----~~~r~~vA~~Lglp~~kV~V~~~------~vGGgFGgK~~ 827 (1185)
..++....++||.++|+++.... ..+.+.+|+.||+|.++|+|... .-+|.+|++.+
T Consensus 319 ~~~a~v~l~~DG~v~v~~~~~e~GqG~~T~~~qiaAe~Lgi~~~~V~v~~~dT~~~p~~~~t~gSr~t 386 (547)
T PF02738_consen 319 QSSARVRLNPDGSVTVYTGGVEMGQGSRTALAQIAAEELGIPPEDVRVVSGDTDTTPYDGGTGGSRST 386 (547)
T ss_dssp EEEEEEEE-TTS-EEEEES--BSSSSHHHHHHHHHHHHHTS-GGGEEEEECBTTTS-SB--S-TTTHH
T ss_pred CCcEEEEEEeCCCEEEEEecccCCcchhhhHHHHHHHHhCCChhhEEEEeCCCcCCCCCCCCccchhh
Confidence 45677788889999999987433 35788999999999999999864 45677787764
No 99
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=49.70 E-value=9.2 Score=43.16 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=24.7
Q ss_pred HHHHHHHHhhccccccc---ccccccccccCCCCCccEEE
Q 001024 9 ALTLLRLCLSSCVITLA---LRVSSSVVVKASGCGACVVL 45 (1185)
Q Consensus 9 ~~~~~~~~~~~~~~~~~---~~~~~k~gC~~G~CGaCtV~ 45 (1185)
++.-.+..+...|+.-. .-..++..|++|-||+|+|.
T Consensus 203 mv~~~~~~L~~~Gv~~~~i~~~~~~~m~cg~g~c~~c~~~ 242 (263)
T PRK08221 203 MMKFTVLEFLKRGIKEENIWVSYERKMCCGVGKCGHCKID 242 (263)
T ss_pred HHHHHHHHHHHcCCCHHHEEEEecceeEccCcccCCcccC
Confidence 34444555555665311 22568999999999999974
No 100
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=49.69 E-value=12 Score=49.17 Aligned_cols=70 Identities=19% Similarity=0.346 Sum_probs=49.5
Q ss_pred ccccccCCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEe---cCCCCCCCCCcHHHHHHHhccCCCCCC
Q 001024 30 SSVVVKASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTS---EGLGNSKTGFHPIHQRFAGFHASQCGF 106 (1185)
Q Consensus 30 ~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~Tv---Eg~~~~~~~~h~iq~a~~~~~~~qCG~ 106 (1185)
.+..+..|.|.-|.|.|.. ..+.+.||.+|+. +|+.|.|- |-+. ..=.-+.+.+...|--.|..
T Consensus 39 ~~~l~~~g~Cr~C~Vev~g--------~~~~~~aC~t~v~--~gm~V~t~~~s~~v~---~~r~~~le~ll~~hp~dC~~ 105 (797)
T PRK07860 39 HPLLDPVGACRQCLVEVEG--------QRKPQASCTTTVT--DGMVVKTQLTSPVAD---KAQHGVMELLLINHPLDCPV 105 (797)
T ss_pred CCCCCCCcccCccEEEECC--------CcccccccCCCCC--CCcEEEeCCCCHHHH---HHHHHHHHHHHhcCCCCCCC
Confidence 3456678999999999921 1246899999976 79999983 1111 11234666778889999999
Q ss_pred CCchHH
Q 001024 107 CTPGMC 112 (1185)
Q Consensus 107 CtPG~v 112 (1185)
|.-+-=
T Consensus 106 C~~~g~ 111 (797)
T PRK07860 106 CDKGGE 111 (797)
T ss_pred CCCCCC
Confidence 987643
No 101
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=47.97 E-value=15 Score=34.92 Aligned_cols=18 Identities=17% Similarity=0.425 Sum_probs=15.8
Q ss_pred ccccccCCCCCccEEEEc
Q 001024 30 SSVVVKASGCGACVVLLS 47 (1185)
Q Consensus 30 ~k~gC~~G~CGaCtV~~~ 47 (1185)
...+|+.|.||.|.|-+-
T Consensus 36 i~~~C~~G~Cg~C~v~v~ 53 (97)
T TIGR02008 36 LPYSCRAGACSTCAGKVE 53 (97)
T ss_pred CCcCCCCccCCCCceEEE
Confidence 367999999999999993
No 102
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=45.93 E-value=12 Score=29.67 Aligned_cols=18 Identities=28% Similarity=0.698 Sum_probs=12.8
Q ss_pred ccccccCCCCCccEEEEc
Q 001024 30 SSVVVKASGCGACVVLLS 47 (1185)
Q Consensus 30 ~k~gC~~G~CGaCtV~~~ 47 (1185)
.+.+|+-|.|++|.|-..
T Consensus 2 ~~M~CG~G~C~~C~v~~~ 19 (40)
T PF10418_consen 2 RRMACGVGACGGCVVPVK 19 (40)
T ss_dssp ---SSSSSSS-TTEEECS
T ss_pred CcccCCCcEeCCcEeeee
Confidence 367899999999999874
No 103
>PLN00192 aldehyde oxidase
Probab=45.80 E-value=39 Score=46.99 Aligned_cols=73 Identities=18% Similarity=0.110 Sum_probs=51.9
Q ss_pred cCCCceEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCC--------CCccEEEEEc------ccCCCCCCCCccc
Q 001024 769 METQTALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGI--------PEHNVRVITR------RVGGAFGGKAIKA 829 (1185)
Q Consensus 769 mEp~~avA~~~~dg~l~V~~sTQ~p-----~~~r~~vA~~Lgl--------p~~kV~V~~~------~vGGgFGgK~~~~ 829 (1185)
+-+..+++....||.++|+++.+.. +.+.+.+|+.||+ |.++|+|... .-+|.+|++.+.
T Consensus 1028 ~~~~~a~v~i~~DGsv~v~~G~~e~GQG~~T~~aQiaA~~LGi~~~~~~~ip~e~I~v~~~dT~~~p~~~~t~gSr~t~- 1106 (1344)
T PLN00192 1028 LRPTPGKVSILSDGSIAVEVGGIEIGQGLWTKVKQMAAFGLGMIKCDGGEDLLDKIRVIQSDTLSMIQGGFTAGSTTSE- 1106 (1344)
T ss_pred ccCCceEEEEeCCceEEEEECCCCCCCCHHHHHHHHHHHHhCCccccccCCChhhEEEEecCCCCCCCCCCCchhhhHH-
Confidence 3455777888778999999998655 4567888999995 9999999853 457788888642
Q ss_pred cHHHHHHHHHHHhC
Q 001024 830 MPVATACALAAYKL 843 (1185)
Q Consensus 830 ~~~~~~aAlaA~~~ 843 (1185)
....++-.||.++
T Consensus 1107 -~~G~Av~~Ac~~l 1119 (1344)
T PLN00192 1107 -SSCEAVRLCCVIL 1119 (1344)
T ss_pred -HHHHHHHHHHHHH
Confidence 2233344455554
No 104
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=44.56 E-value=1e+02 Score=28.43 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=34.8
Q ss_pred CceeeeeEEEEcccCCCCcccHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001024 453 GIRVNNCRLAFGAFGTKHAIRARRVEEFLTGKVLNFGVLYEAIKLL 498 (1185)
Q Consensus 453 ~~~i~~~ria~Ggv~~~~p~ra~~~E~~L~Gk~~~~~~l~~a~~~l 498 (1185)
+|+|++++|.=-.+... . ..+.|+.|.|.+.+.+.+.+++..+
T Consensus 26 ~G~I~~i~i~gDf~~~~-~--i~~le~~L~G~~~~~~~i~~~l~~~ 68 (86)
T PF10437_consen 26 NGIIKDIKIYGDFFGPE-D--IEELEEALIGCPYDREAIKEALNSV 68 (86)
T ss_dssp TTEEEEEEEEECBS-CC-C--HHHHHHHHTTCBSSHHHHHHHHHHC
T ss_pred CCEEEEEEEECCCCCch-H--HHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 58999999974334433 3 7999999999999999999998876
No 105
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=42.51 E-value=22 Score=45.26 Aligned_cols=60 Identities=25% Similarity=0.438 Sum_probs=45.0
Q ss_pred CCCCCccEEEEcccCCCcCCCCC-eeccchHhhhHhcCCCEEEEecCCCCCCCCCc----HHHHHHHhccCCCCCCCCch
Q 001024 36 ASGCGACVVLLSKYNPELDQLED-FTISSCLTLLCSVNGCLITTSEGLGNSKTGFH----PIHQRFAGFHASQCGFCTPG 110 (1185)
Q Consensus 36 ~G~CGaCtV~~~~~~~~~~~~~~-~~v~sCl~~~~~~~g~~i~TvEg~~~~~~~~h----~iq~a~~~~~~~qCG~CtPG 110 (1185)
.|.|.-|.|.+.. .. +.|.||.+|+. +|+.|.| . ++++. -+.+.|...|---|..|.-+
T Consensus 39 ~g~Cr~C~v~v~g--------~~~~~~~aC~~~~~--~gm~v~t----~--~~~~~~~r~~~~e~ll~~h~~dC~~C~~~ 102 (603)
T TIGR01973 39 AGNCRMCLVEVEK--------FPDKPVASCATPVT--DGMKIST----N--SEKVKKAREGVMEFLLINHPLDCPICDQG 102 (603)
T ss_pred CCccccCEEEECC--------CCCCcccccCCCCC--CCCEEEe----C--CHHHHHHHHHHHHHHHhcCCCCCCcCCCC
Confidence 8999999999921 11 27999999976 7999999 2 23333 35556677899999999986
Q ss_pred H
Q 001024 111 M 111 (1185)
Q Consensus 111 ~ 111 (1185)
-
T Consensus 103 g 103 (603)
T TIGR01973 103 G 103 (603)
T ss_pred C
Confidence 4
No 106
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=42.21 E-value=20 Score=39.98 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=33.7
Q ss_pred cHHHHHHHHhhcccccccccccccccccCCCCCccEEEEc
Q 001024 8 QALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLLS 47 (1185)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~~ 47 (1185)
.+..-++..+...|+.-++-.-.+.-|++|-||+|-+...
T Consensus 190 ~mv~~~~~~L~~~Gv~~~~~~~~~~~~~~g~c~~c~~~~~ 229 (246)
T cd06218 190 PMLKAVAELAAERGVPCQVSLEERMACGIGACLGCVVKTK 229 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEecccccCccceecccEEEee
Confidence 4566677777788998888888999999999999999883
No 107
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=40.88 E-value=50 Score=37.23 Aligned_cols=73 Identities=12% Similarity=0.109 Sum_probs=50.2
Q ss_pred ccccC-CcEEEecCCHHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEcCCeEEecccc
Q 001024 218 MLLDV-KGSWHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATV 296 (1185)
Q Consensus 218 ~~~~~-~~~~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~v 296 (1185)
+.+.+ .--|+.|.+.+ + . -...++.+|+-+.+-... ...+| + ..+++.|+.+++.|++||++
T Consensus 13 ~~iGG~A~~~~~~~~~~-l----~-------~p~~vlG~GSNlLv~D~g--~~~vv-~--~~~~~~~~~~~~~v~~~AG~ 75 (257)
T PRK13904 13 VKIGPPLEVLVLEEIDD-F----S-------QDGQIIGGANNLLISPNP--KNLAI-L--GKNFDYIKIDGECLEIGGAT 75 (257)
T ss_pred eeECceEEEEEEechhh-h----C-------CCeEEEeceeEEEEecCC--ccEEE-E--ccCcCeEEEeCCEEEEEcCC
Confidence 45555 34466677776 4 2 257889999988663332 34555 2 23467778788899999999
Q ss_pred cHHHHHHHHHH
Q 001024 297 TISKAIEALKE 307 (1185)
Q Consensus 297 Tl~~l~~~~~~ 307 (1185)
.+.+|......
T Consensus 76 ~l~~l~~~~~~ 86 (257)
T PRK13904 76 KSGKIFNYAKK 86 (257)
T ss_pred cHHHHHHHHHH
Confidence 99999887654
No 108
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=40.83 E-value=68 Score=29.29 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=39.9
Q ss_pred cceEEEEeeCCcEEEEECCcCCCCcchhHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCcc
Q 001024 1039 TPGKVSILSDGSVVVEVGGIEMGQGLWTKVKQMAAFALSSIKCGGTGNLLEKVRVVQADTLS 1100 (1185)
Q Consensus 1039 ~~a~V~v~~DGsV~V~~g~~e~GqG~~T~~aQIaA~~Lgi~~~~~~~~p~e~V~v~~~dT~~ 1100 (1185)
....+.++.||.+.|.....+..-=-|..+....|+.||+ |..+|++..+.|+.
T Consensus 16 ~~~i~~~~~~~~l~i~v~app~~GkAN~ali~~La~~l~v--------~ks~i~i~~G~~Sr 69 (77)
T PF02594_consen 16 RNAIVGVEGDGALKIRVTAPPVDGKANKALIRFLAKALGV--------PKSDIEIVSGHTSR 69 (77)
T ss_dssp S-EEEEE-TTT-EEEEBSTTCCCCCHHHHHHHHHHHHCT----------TTCEEECC-CCCS
T ss_pred ccccccccCceEEEEEEecCCCcChhHHHHHHHHHHHhCC--------CcccEEEEecCCCC
Confidence 3445567767999999888877767799999999999999 99999999887753
No 109
>CHL00134 petF ferredoxin; Validated
Probab=40.53 E-value=24 Score=33.65 Aligned_cols=17 Identities=18% Similarity=0.446 Sum_probs=15.3
Q ss_pred ccccccCCCCCccEEEE
Q 001024 30 SSVVVKASGCGACVVLL 46 (1185)
Q Consensus 30 ~k~gC~~G~CGaCtV~~ 46 (1185)
...+|+.|.||.|.|-+
T Consensus 38 i~~~C~~G~Cg~C~v~v 54 (99)
T CHL00134 38 LPYSCRAGACSTCAGKV 54 (99)
T ss_pred CCcCCCCccCCCCEEEE
Confidence 35699999999999999
No 110
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=37.66 E-value=18 Score=34.80 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=18.0
Q ss_pred ccccc--ccccCCCCCccEEEEcc
Q 001024 27 RVSSS--VVVKASGCGACVVLLSK 48 (1185)
Q Consensus 27 ~~~~k--~gC~~G~CGaCtV~~~~ 48 (1185)
+.|+. .+|+.|.||.|.|.|.+
T Consensus 31 ~~gi~i~~~C~~g~C~TC~v~v~~ 54 (102)
T COG0633 31 RNGIPIEYACRGGACGTCRVKVLE 54 (102)
T ss_pred HCCCcceecCCCCccCccEEEEec
Confidence 34455 89999999999999954
No 111
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=35.46 E-value=18 Score=48.04 Aligned_cols=74 Identities=19% Similarity=0.319 Sum_probs=49.9
Q ss_pred ccccc------CCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEecCCCCCCCCCcHHHHHHHhccCCCC
Q 001024 31 SVVVK------ASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQC 104 (1185)
Q Consensus 31 k~gC~------~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEg~~~~~~~~h~iq~a~~~~~~~qC 104 (1185)
...|. .|.|+.|.|.+..-. . +...+.+.||.+|+. +|+.|.|-.--- ...=.-+.+.|...|-..|
T Consensus 31 p~~C~~~~~~~~G~C~~C~v~v~~g~-~--~~~~~~~~aC~~~v~--~gm~v~t~~~~~--~~~r~~~~e~ll~~hp~dc 103 (847)
T PRK08166 31 PYFCWHPALGSVGACRQCAVKQYQNP-E--DTRGRLVMSCMTPAT--DGTFISIDDPEA--KAFRASVVEWLMTNHPHDC 103 (847)
T ss_pred CccccCCCCCCCCccCCCeEEEeecC-c--cCCCCcccCcCCCCC--CCCEEEeCCHHH--HHHHHHHHHHHHhcCCCCC
Confidence 34897 599999999994210 0 113457899988876 699999832110 1112346777888999999
Q ss_pred CCCCchH
Q 001024 105 GFCTPGM 111 (1185)
Q Consensus 105 G~CtPG~ 111 (1185)
..|.-|-
T Consensus 104 ~~c~~~g 110 (847)
T PRK08166 104 PVCEEGG 110 (847)
T ss_pred CccCCCC
Confidence 9998663
No 112
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=33.69 E-value=31 Score=40.33 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=15.9
Q ss_pred ccccccCCCCCccEEEEc
Q 001024 30 SSVVVKASGCGACVVLLS 47 (1185)
Q Consensus 30 ~k~gC~~G~CGaCtV~~~ 47 (1185)
+..+|+.|.||.|.|-+.
T Consensus 279 ~~~~C~~G~Cg~C~~~~~ 296 (332)
T PRK10684 279 VVAACRAGVCGCCKTKVV 296 (332)
T ss_pred ccCCCCCcCCCCCEEEEe
Confidence 467999999999999983
No 113
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=33.40 E-value=37 Score=38.75 Aligned_cols=60 Identities=22% Similarity=0.359 Sum_probs=43.1
Q ss_pred CCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEecCCCCCCCCCcH----HHHHHHhccCCCCCCCCchH
Q 001024 36 ASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHP----IHQRFAGFHASQCGFCTPGM 111 (1185)
Q Consensus 36 ~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEg~~~~~~~~h~----iq~a~~~~~~~qCG~CtPG~ 111 (1185)
.|.|.-|.|.|. | ..+.|.||.+|+. +|+.|.| . ++.+.. +.+-|...|-.-|.-|.-+=
T Consensus 110 ~G~CRlClVEVe------G--~~~lv~AC~tpV~--eGM~V~T----~--Se~v~~~Rk~vLElLLs~Hp~DC~~C~k~G 173 (297)
T PTZ00305 110 AGNCRMCLVQVD------G--TQNLVVSCATVAL--PGMSIIT----D--SRLVRDAREGNVELILINHPNDCPICEQAT 173 (297)
T ss_pred CCccceeEEEEC------C--CcCcccccCCcCC--CCCEEEe----C--CHHHHHHHHHHHHHHHhcCCCcCCcccCcC
Confidence 789999999992 1 2357999999976 7999998 2 233333 44556677888888887643
No 114
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=31.36 E-value=32 Score=41.59 Aligned_cols=63 Identities=21% Similarity=0.426 Sum_probs=49.9
Q ss_pred CCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEecCCCCCCCCCcHHHHHHHhccCCCCCCCCch
Q 001024 36 ASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFHPIHQRFAGFHASQCGFCTPG 110 (1185)
Q Consensus 36 ~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEg~~~~~~~~h~iq~a~~~~~~~qCG~CtPG 110 (1185)
.|.|--|-|.|.+ .-+||.||-||+ +.|+.|.|=--+.. ..-.-|.+-|.-+|-.-|.-|.-|
T Consensus 73 agncrmclvevek--------spkpva~campv--m~g~~iktns~~~k--karegvmefll~nhpldcpicdqg 135 (708)
T KOG2282|consen 73 AGNCRMCLVEVEK--------SPKPVAACAMPV--MKGWKIKTNSDKSK--KAREGVMEFLLMNHPLDCPICDQG 135 (708)
T ss_pred ccceeEEEEEecc--------CCCcchhhcccc--cCCceeecCchHHH--HHHHHHHHHHHhCCCCCCCccCCC
Confidence 4899999999954 357999999996 68999999655532 123458889999999999999877
No 115
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=30.17 E-value=43 Score=43.28 Aligned_cols=60 Identities=22% Similarity=0.386 Sum_probs=42.0
Q ss_pred CCCCCccEEEEcccCCCcCCCCCeeccchHhhhHhcCCCEEEEecCCCCCCCCCc----HHHHHHHhccCCCCCCCCch
Q 001024 36 ASGCGACVVLLSKYNPELDQLEDFTISSCLTLLCSVNGCLITTSEGLGNSKTGFH----PIHQRFAGFHASQCGFCTPG 110 (1185)
Q Consensus 36 ~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~TvEg~~~~~~~~h----~iq~a~~~~~~~qCG~CtPG 110 (1185)
.|.|.-|.|.+... ..+++.||.+|+. +|+.|.| . ++... -+.+.|...|---|..|.-|
T Consensus 42 ~g~Cr~ClVev~~~-------~~~~~~sC~~~v~--~gm~v~T----~--s~~v~~~r~~~le~ll~~Hp~dC~~C~~~ 105 (687)
T PRK09130 42 AGNCRMCLVEVKGG-------PPKPVASCAMPVG--EGMVIFT----N--TPMVKKAREGVMEFLLINHPLDCPICDQG 105 (687)
T ss_pred CCCCCCCEEEECCC-------CCCcccccCCCCC--CCCEEEe----C--CHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 69999999999310 1358999999976 7999998 2 23332 34455666777777777753
No 116
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=30.04 E-value=38 Score=39.81 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=15.9
Q ss_pred ccccccCCCCCccEEEEc
Q 001024 30 SSVVVKASGCGACVVLLS 47 (1185)
Q Consensus 30 ~k~gC~~G~CGaCtV~~~ 47 (1185)
...+|+.|.||.|.|-+-
T Consensus 296 ~~~~C~~G~Cg~C~~~~~ 313 (352)
T TIGR02160 296 LPFACKGGVCGTCRAKVL 313 (352)
T ss_pred CcCCCCCccCCCCEEEEe
Confidence 367999999999999983
No 117
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=29.40 E-value=94 Score=37.46 Aligned_cols=79 Identities=15% Similarity=0.190 Sum_probs=52.2
Q ss_pred EEecCCHHHHHHHHHhhcCCCCCCcEEEeCCcccccccccCCCCeeEeCCCCCCCCceEEcCCeEEecccccHHHHHHHH
Q 001024 226 WHSPISVQELRNVLESVEGSNQISSKLVAGNTGMGYYKEVEHYDKYIDIRYIPELSVIRRDQTGIEIGATVTISKAIEAL 305 (1185)
Q Consensus 226 ~~~P~sl~ea~~ll~~~~~~~~~~a~lvaGgT~l~~~k~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vTl~~l~~~~ 305 (1185)
+-.|+|++|+.++.+.... .+.+.|.|. .++.+-+.......+|+++.+.--.++.-+.-.|++=|++|+.||.+.+
T Consensus 53 v~yP~teaeL~~lVa~A~~-a~~kirvVg--~gHSp~~l~ctdg~lisl~~lnkVv~~dpe~~tvTV~aGirlrQLie~~ 129 (518)
T KOG4730|consen 53 VNYPKTEAELVELVAAATE-AGKKIRVVG--SGHSPSKLVCTDGLLISLDKLNKVVEFDPELKTVTVQAGIRLRQLIEEL 129 (518)
T ss_pred cCCCCCHHHHHHHHHHHHH-cCceEEEec--ccCCCCcceeccccEEEhhhhccceeeCchhceEEeccCcCHHHHHHHH
Confidence 4459999999999875321 234556554 4443333323344789988876443444445689999999999999876
Q ss_pred HH
Q 001024 306 KE 307 (1185)
Q Consensus 306 ~~ 307 (1185)
..
T Consensus 130 ~~ 131 (518)
T KOG4730|consen 130 AK 131 (518)
T ss_pred Hh
Confidence 64
No 118
>PLN03136 Ferredoxin; Provisional
Probab=29.38 E-value=45 Score=34.44 Aligned_cols=18 Identities=17% Similarity=0.410 Sum_probs=15.7
Q ss_pred ccccccCCCCCccEEEEc
Q 001024 30 SSVVVKASGCGACVVLLS 47 (1185)
Q Consensus 30 ~k~gC~~G~CGaCtV~~~ 47 (1185)
...+|+.|.||.|.+-+-
T Consensus 87 lp~sCr~G~CGtC~~~l~ 104 (148)
T PLN03136 87 LPYSCRAGSCSSCAGKVV 104 (148)
T ss_pred CCcCCCCccCCCCEEEEe
Confidence 367899999999999983
No 119
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=29.25 E-value=33 Score=39.29 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=27.0
Q ss_pred cHHHHHHHHhhccccccc---ccccccccccCCCCCccEEEE
Q 001024 8 QALTLLRLCLSSCVITLA---LRVSSSVVVKASGCGACVVLL 46 (1185)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~---~~~~~k~gC~~G~CGaCtV~~ 46 (1185)
++.+-++..+..+|+.-. .-.....+||-|.||+|+|-.
T Consensus 222 ~m~~~v~~~L~~~Gv~~~~i~~~l~~~m~cg~g~c~~c~~~~ 263 (289)
T PRK08345 222 VMYKFVFKELINRGYRPERIYVTLERRMRCGIGKCGHCIVGT 263 (289)
T ss_pred HHHHHHHHHHHHcCCCHHHEEEEehhcccccCcccCCCccCC
Confidence 456666776777776311 122357899999999999976
No 120
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=29.00 E-value=47 Score=37.86 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=25.7
Q ss_pred cHHHHHHHHhhcccccccccccccccccCCCCCccEEEE
Q 001024 8 QALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLL 46 (1185)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~ 46 (1185)
+++.-+...+...++..-+-.-.+.+||.|.||.|+|-.
T Consensus 191 ~M~~~v~~~l~~~gv~~~~sle~~M~CG~G~C~~C~v~~ 229 (281)
T PRK06222 191 IMMKFVAELTKPYGIKTIVSLNPIMVDGTGMCGACRVTV 229 (281)
T ss_pred HHHHHHHHHHHhcCCCEEEECcccccCcccccceeEEEE
Confidence 344445555555555332233488999999999999965
No 121
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=25.91 E-value=33 Score=44.99 Aligned_cols=64 Identities=22% Similarity=0.392 Sum_probs=47.8
Q ss_pred CCCCCccEEEEcccCCCcCCCCC--eeccchHhhhHhcCCCEEEEecCCCCCCCCC----cHHHHHHHhccCCCCCCCCc
Q 001024 36 ASGCGACVVLLSKYNPELDQLED--FTISSCLTLLCSVNGCLITTSEGLGNSKTGF----HPIHQRFAGFHASQCGFCTP 109 (1185)
Q Consensus 36 ~G~CGaCtV~~~~~~~~~~~~~~--~~v~sCl~~~~~~~g~~i~TvEg~~~~~~~~----h~iq~a~~~~~~~qCG~CtP 109 (1185)
.|.|.-|.|.+ ++ +.+.||.+|+. +|+.|.|- .+.+ .-+-+.|...|--.|..|.-
T Consensus 42 ~~~C~~C~v~v----------~~~~~~~~aC~~~~~--~gm~v~t~------~~~~~~~r~~~l~~ll~~h~~~C~~c~~ 103 (776)
T PRK09129 42 AANCRMCLVEV----------EKAPKPLPACATPVT--DGMKVFTR------SEKALKAQKSVMEFLLINHPLDCPICDQ 103 (776)
T ss_pred CCCcceeEEEE----------CCCCCcCcccCCCCC--CCCEEEcC------CHHHHHHHHHHHHHHHhcCCCCcccCCC
Confidence 57899999999 33 35899999976 79999982 2222 33556677889999999998
Q ss_pred hHHHHHHH
Q 001024 110 GMCMSLFS 117 (1185)
Q Consensus 110 G~vm~~~~ 117 (1185)
+--+-+-.
T Consensus 104 ~g~C~Lq~ 111 (776)
T PRK09129 104 GGECQLQD 111 (776)
T ss_pred CCCCHHHH
Confidence 77554433
No 122
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=25.12 E-value=1.7e+02 Score=26.72 Aligned_cols=42 Identities=17% Similarity=0.367 Sum_probs=28.1
Q ss_pred eEEEECCCCcEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEE
Q 001024 774 ALAVPDEDNCLVVYSSIQCP-----ESAHATIARCLGIPEHNVRVIT 815 (1185)
Q Consensus 774 avA~~~~dg~l~V~~sTQ~p-----~~~r~~vA~~Lglp~~kV~V~~ 815 (1185)
.+.-+.+++.|.|....+-- ..+...+|+.||+|.++|.+..
T Consensus 18 ~i~~~~~~~~l~i~v~app~~GkAN~ali~~La~~l~v~ks~i~i~~ 64 (77)
T PF02594_consen 18 AIVGVEGDGALKIRVTAPPVDGKANKALIRFLAKALGVPKSDIEIVS 64 (77)
T ss_dssp EEEEE-TTT-EEEEBSTTCCCCCHHHHHHHHHHHHCT--TTCEEECC
T ss_pred ccccccCceEEEEEEecCCCcChhHHHHHHHHHHHhCCCcccEEEEe
Confidence 44444443577777776543 5678999999999999999875
No 123
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=24.51 E-value=52 Score=44.47 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=27.1
Q ss_pred cHHHHHHHHhhcccccccccccccccccCCCCCccEEEE
Q 001024 8 QALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLL 46 (1185)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~ 46 (1185)
+++..+...+...++-.-+-.-....|+.|.||+|.|-+
T Consensus 191 ~Mm~av~~~~~~~gi~~~vSle~~M~cG~G~Cg~C~v~~ 229 (1006)
T PRK12775 191 PMMNACVETTRPFGVKTMVSLNAIMVDGTGMCGSCRVTV 229 (1006)
T ss_pred HHHHHHHHHHHHCCCcEEECChhheeCccceeCCCEeee
Confidence 466666666666666211112378999999999999987
No 124
>PRK05713 hypothetical protein; Provisional
Probab=23.55 E-value=37 Score=39.29 Aligned_cols=16 Identities=31% Similarity=0.619 Sum_probs=14.5
Q ss_pred cccccCCCCCccEEEE
Q 001024 31 SVVVKASGCGACVVLL 46 (1185)
Q Consensus 31 k~gC~~G~CGaCtV~~ 46 (1185)
..+|+.|.||.|.|.+
T Consensus 31 ~~~C~~G~Cg~C~~~~ 46 (312)
T PRK05713 31 PYSCRAGSCHACLVRC 46 (312)
T ss_pred CcCCCCcCCCCCeEEE
Confidence 4589999999999998
No 125
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=21.98 E-value=68 Score=42.02 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=27.5
Q ss_pred cHHHHHHHHhhcccccccccccccccccCCCCCccEEEE
Q 001024 8 QALTLLRLCLSSCVITLALRVSSSVVVKASGCGACVVLL 46 (1185)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~k~gC~~G~CGaCtV~~ 46 (1185)
+++.-+...+...|+..-+-......||.|.||+|.|-.
T Consensus 191 ~M~~~v~~~l~~~gv~~~~Sle~~M~CG~G~C~~C~v~~ 229 (752)
T PRK12778 191 IMMKFVCLLTKKYGIPTIVSLNTIMVDGTGMCGACRVTV 229 (752)
T ss_pred HHHHHHHHHHHHcCCCEEEeCcccccCcccccCcceeEe
Confidence 455556666666665433334578999999999999965
No 126
>PTZ00038 ferredoxin; Provisional
Probab=21.55 E-value=75 Score=34.20 Aligned_cols=18 Identities=17% Similarity=0.449 Sum_probs=15.6
Q ss_pred ccccccCCCCCccEEEEc
Q 001024 30 SSVVVKASGCGACVVLLS 47 (1185)
Q Consensus 30 ~k~gC~~G~CGaCtV~~~ 47 (1185)
...+|+.|.||.|.|-+.
T Consensus 128 lp~sCr~G~CGtCkvrV~ 145 (191)
T PTZ00038 128 LPYSCRGGSCSTCAAKLL 145 (191)
T ss_pred CCcCCCCccCCCCEeEEe
Confidence 367999999999999883
Done!