Query 001025
Match_columns 1184
No_of_seqs 191 out of 329
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 07:07:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001025.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001025hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w1w_E SCC1, sister chromatid 92.0 0.045 1.6E-06 53.2 1.4 29 1154-1182 26-54 (121)
2 2vda_B Maltoporin; sugar trans 15.8 23 0.0008 26.8 -0.7 9 745-753 5-13 (28)
3 1ew4_A CYAY protein; friedreic 14.2 17 0.00058 34.3 -2.3 21 4-24 47-67 (106)
4 3t3l_A Frataxin, mitochondrial 11.2 24 0.00084 34.5 -2.3 20 4-23 60-79 (129)
5 3oeq_A Frataxin homolog, mitoc 9.3 34 0.0012 33.4 -2.0 19 4-22 66-84 (123)
6 3cjh_B Mitochondrial import in 8.6 1.1E+02 0.0039 26.1 1.1 10 1170-1179 43-52 (64)
7 3cjh_A Mitochondrial import in 7.8 1.3E+02 0.0044 26.0 1.1 11 1169-1179 33-43 (64)
8 2bsk_B Mitochondrial import in 7.2 1.4E+02 0.0048 27.2 1.1 10 1170-1179 52-61 (90)
9 3dxr_B Mitochondrial import in 7.2 1.4E+02 0.0047 27.9 1.1 10 1170-1179 65-74 (95)
10 3dxr_A Mitochondrial import in 7.1 1.4E+02 0.0049 27.2 1.1 10 1170-1179 59-68 (89)
No 1
>1w1w_E SCC1, sister chromatid cohesion protein 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: a.4.5.57
Probab=92.01 E-value=0.045 Score=53.16 Aligned_cols=29 Identities=10% Similarity=-0.150 Sum_probs=14.2
Q ss_pred CcccccccccCCcchhhHHHHhhhhhhcc
Q 001025 1154 CPEDARVLENSGWSSRTRCVCFMCMVCFL 1182 (1184)
Q Consensus 1154 ~~e~~r~LENSGWSSRTRAVAkYlq~lf~ 1182 (1184)
..|..+..++.|||.|||+||+||...|.
T Consensus 26 ~~e~v~~~~~~~~Sk~T~~v~~~Lr~~f~ 54 (121)
T 1w1w_E 26 QTEKVRPTPGEVASKAIVQMAKILRKELS 54 (121)
T ss_dssp --------------CHHHHHHHHHHHHTT
T ss_pred cccceeeccCCcccHHHHHHHHHHHHHhC
Confidence 35899999999999999999999999885
No 2
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=15.84 E-value=23 Score=26.81 Aligned_cols=9 Identities=44% Similarity=0.589 Sum_probs=7.3
Q ss_pred HHhhhcCCC
Q 001025 745 RRIRKKAPC 753 (1184)
Q Consensus 745 ~rkRKKaPc 753 (1184)
+|||||+|-
T Consensus 5 lrkrrklpl 13 (28)
T 2vda_B 5 LRKRRKLPL 13 (28)
T ss_dssp CCCCCCCTH
T ss_pred eeccccCch
Confidence 588999984
No 3
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=14.23 E-value=17 Score=34.31 Aligned_cols=21 Identities=29% Similarity=0.732 Sum_probs=18.2
Q ss_pred chhhhhccCCchhhHHHhhcc
Q 001025 4 SQFILAKKGPLGTIWIAAHLE 24 (1184)
Q Consensus 4 S~~LLSKKGPLAtIWLAATL~ 24 (1184)
++.|+.|..|+.+|||||-.+
T Consensus 47 ~~~VINkQ~P~~QIWlaSp~s 67 (106)
T 1ew4_A 47 SKIIINRQEPLHQVWLATKQG 67 (106)
T ss_dssp CEEEEEEETTTTEEEEECSSC
T ss_pred CEEEEeCCchhhhheEecCCC
Confidence 457888999999999999875
No 4
>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A
Probab=11.19 E-value=24 Score=34.45 Aligned_cols=20 Identities=20% Similarity=0.647 Sum_probs=17.6
Q ss_pred chhhhhccCCchhhHHHhhc
Q 001025 4 SQFILAKKGPLGTIWIAAHL 23 (1184)
Q Consensus 4 S~~LLSKKGPLAtIWLAATL 23 (1184)
++.|+.|..|+.+|||||-.
T Consensus 60 g~~VINkQ~P~~QIWLASp~ 79 (129)
T 3t3l_A 60 GTYVINKQTPNKAIWLSSPS 79 (129)
T ss_dssp CEEEEEEETTTTEEEEECSS
T ss_pred CEEEEeCCchhhHhheeCCC
Confidence 56788999999999999984
No 5
>3oeq_A Frataxin homolog, mitochondrial; alpha/beta sandwich, metallochaperone, iron-storage, transpo protein; 2.96A {Saccharomyces cerevisiae} SCOP: d.82.2.1 PDB: 2fql_A 3oer_A 2ga5_A
Probab=9.28 E-value=34 Score=33.41 Aligned_cols=19 Identities=26% Similarity=0.721 Sum_probs=16.8
Q ss_pred chhhhhccCCchhhHHHhh
Q 001025 4 SQFILAKKGPLGTIWIAAH 22 (1184)
Q Consensus 4 S~~LLSKKGPLAtIWLAAT 22 (1184)
++.|+.|..|+.+|||||-
T Consensus 66 ~~~VINkQ~P~~QIWlaSp 84 (123)
T 3oeq_A 66 GTYVINKQPPNKQIWLASP 84 (123)
T ss_dssp CCEEEECCCSSSCCEEEET
T ss_pred CEEEEeCCChhhHHheecC
Confidence 4678889999999999996
No 6
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=8.58 E-value=1.1e+02 Score=26.08 Aligned_cols=10 Identities=20% Similarity=0.295 Sum_probs=7.7
Q ss_pred hHHHHhhhhh
Q 001025 1170 TRCVCFMCMV 1179 (1184)
Q Consensus 1170 TRAVAkYlq~ 1179 (1184)
.|||+||+.+
T Consensus 43 ~~Cv~ky~~~ 52 (64)
T 3cjh_B 43 SNCVNRFLDT 52 (64)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5788888765
No 7
>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=7.77 E-value=1.3e+02 Score=26.01 Aligned_cols=11 Identities=9% Similarity=0.177 Sum_probs=8.8
Q ss_pred hhHHHHhhhhh
Q 001025 1169 RTRCVCFMCMV 1179 (1184)
Q Consensus 1169 RTRAVAkYlq~ 1179 (1184)
=.|||+||+.+
T Consensus 33 i~~Cv~Ky~~~ 43 (64)
T 3cjh_A 33 IDQCLAKYMRS 43 (64)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 37899999875
No 8
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=7.24 E-value=1.4e+02 Score=27.23 Aligned_cols=10 Identities=30% Similarity=0.494 Sum_probs=7.5
Q ss_pred hHHHHhhhhh
Q 001025 1170 TRCVCFMCMV 1179 (1184)
Q Consensus 1170 TRAVAkYlq~ 1179 (1184)
.|||+||+.+
T Consensus 52 ~~Cv~Ky~d~ 61 (90)
T 2bsk_B 52 DRCVSKYLDI 61 (90)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5788888765
No 9
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=7.22 E-value=1.4e+02 Score=27.91 Aligned_cols=10 Identities=30% Similarity=0.461 Sum_probs=5.4
Q ss_pred hHHHHhhhhh
Q 001025 1170 TRCVCFMCMV 1179 (1184)
Q Consensus 1170 TRAVAkYlq~ 1179 (1184)
.|||+||+.+
T Consensus 65 ~~Cv~Ky~d~ 74 (95)
T 3dxr_B 65 DRCVAKYFET 74 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4566666543
No 10
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=7.07 E-value=1.4e+02 Score=27.19 Aligned_cols=10 Identities=10% Similarity=0.102 Sum_probs=6.7
Q ss_pred hHHHHhhhhh
Q 001025 1170 TRCVCFMCMV 1179 (1184)
Q Consensus 1170 TRAVAkYlq~ 1179 (1184)
.|||+||+.+
T Consensus 59 ~~Cv~Ky~~~ 68 (89)
T 3dxr_A 59 MKCSEKFLKH 68 (89)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5677777754
Done!