Query 001025
Match_columns 1184
No_of_seqs 191 out of 329
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 07:07:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001025.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/001025hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gkea1 d.21.1.1 (A:1-130) Dia 14.1 25 0.0018 31.6 1.0 12 1168-1179 75-86 (130)
2 d1ew4a_ d.82.2.1 (A:) CyaY {Es 11.8 10 0.00076 33.5 -2.3 21 4-24 47-67 (106)
3 d1ekga_ d.82.2.1 (A:) C-termin 11.1 9.4 0.00069 34.4 -2.9 21 4-24 52-72 (119)
4 d2fqla1 d.82.2.1 (A:61-172) C- 10.3 13 0.00095 33.2 -2.2 21 4-24 57-77 (112)
5 d2essa2 d.38.1.8 (A:150-247) A 7.8 69 0.005 26.2 1.5 29 851-879 5-33 (98)
6 d2bska1 g.83.1.1 (A:13-85) Mit 5.8 88 0.0064 25.9 1.1 10 1170-1179 38-47 (73)
7 d2bskb1 g.83.1.1 (B:13-77) Mit 4.7 1.1E+02 0.0083 24.6 1.1 10 1170-1179 40-49 (65)
8 d2cy3a_ a.138.1.1 (A:) Cytochr 4.1 2.2E+02 0.016 24.2 2.5 31 591-621 1-31 (118)
9 d2vxfa1 b.38.1.5 (A:6-85) LSM1 3.2 2.2E+02 0.016 24.3 1.6 51 644-698 26-77 (80)
10 d2tpta1 a.46.2.1 (A:1-70) Thym 2.6 1.7E+02 0.012 23.0 0.3 34 1-49 1-34 (70)
No 1
>d2gkea1 d.21.1.1 (A:1-130) Diaminopimelate epimerase {Haemophilus influenzae [TaxId: 727]}
Probab=14.14 E-value=25 Score=31.57 Aligned_cols=12 Identities=17% Similarity=0.470 Sum_probs=9.0
Q ss_pred hhhHHHHhhhhh
Q 001025 1168 SRTRCVCFMCMV 1179 (1184)
Q Consensus 1168 SRTRAVAkYlq~ 1179 (1184)
.=+||||+||.-
T Consensus 75 NG~RCva~~l~~ 86 (130)
T d2gkea1 75 NGARCFARFVTL 86 (130)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 347899999864
No 2
>d1ew4a_ d.82.2.1 (A:) CyaY {Escherichia coli [TaxId: 562]}
Probab=11.81 E-value=10 Score=33.48 Aligned_cols=21 Identities=29% Similarity=0.732 Sum_probs=18.0
Q ss_pred chhhhhccCCchhhHHHhhcc
Q 001025 4 SQFILAKKGPLGTIWIAAHLE 24 (1184)
Q Consensus 4 S~~LLSKKGPLAtIWLAATL~ 24 (1184)
++.|++|..|..+||||+-.+
T Consensus 47 ~~~VINkQ~p~~QIWlaSpsg 67 (106)
T d1ew4a_ 47 SKIIINRQEPLHQVWLATKQG 67 (106)
T ss_dssp CEEEEEEETTTTEEEEECSSC
T ss_pred CEEEEeCCCccceeeEECCCC
Confidence 457889999999999999765
No 3
>d1ekga_ d.82.2.1 (A:) C-terminal domain of frataxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.10 E-value=9.4 Score=34.44 Aligned_cols=21 Identities=19% Similarity=0.610 Sum_probs=18.0
Q ss_pred chhhhhccCCchhhHHHhhcc
Q 001025 4 SQFILAKKGPLGTIWIAAHLE 24 (1184)
Q Consensus 4 S~~LLSKKGPLAtIWLAATL~ 24 (1184)
++.|++|..|..+||||+-.+
T Consensus 52 ~~~VINkQ~p~~QIWlASp~s 72 (119)
T d1ekga_ 52 GTYVINKQTPNKQIWLSSPSS 72 (119)
T ss_dssp CEEEEEEEGGGTEEEEEETTT
T ss_pred cEEEEeCCCCceeEEEEcCCC
Confidence 467889999999999999764
No 4
>d2fqla1 d.82.2.1 (A:61-172) C-terminal domain of frataxin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.29 E-value=13 Score=33.17 Aligned_cols=21 Identities=29% Similarity=0.719 Sum_probs=17.7
Q ss_pred chhhhhccCCchhhHHHhhcc
Q 001025 4 SQFILAKKGPLGTIWIAAHLE 24 (1184)
Q Consensus 4 S~~LLSKKGPLAtIWLAATL~ 24 (1184)
++.|++|..|..+||||+-..
T Consensus 57 ~~~VINkQ~p~~QIWlaSp~s 77 (112)
T d2fqla1 57 GTYVINKQPPNKQIWLASPLS 77 (112)
T ss_dssp EEEEEEECCSSSSEEEEETTT
T ss_pred CEEEEeCCCchhheeEecCCC
Confidence 457889999999999999753
No 5
>d2essa2 d.38.1.8 (A:150-247) Acyl-ACP thioesterase {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=7.75 E-value=69 Score=26.20 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=22.2
Q ss_pred ccccccccccccccccCccCccccccccc
Q 001025 851 TESHQGIDHQFGAQNTDAQGHINSDTDVV 879 (1184)
Q Consensus 851 ~e~~~~~~~~~~~~~~d~~~~~~~~~~~~ 879 (1184)
++++.+....+.-.|+|..||+|-..=+.
T Consensus 5 ~~~~~v~~~~vR~~D~D~~gHVNN~~Y~~ 33 (98)
T d2essa2 5 TSNQPVATLTAKYSDIDINGHVNSIRYIE 33 (98)
T ss_dssp CCCSCSEEEECCGGGBCTTSBBCHHHHHH
T ss_pred CCCceEEEEEECHHHcCccceEchHHHHH
Confidence 35566677788999999999999765443
No 6
>d2bska1 g.83.1.1 (A:13-85) Mitochondrial import inner membrane translocase subunit Tim9 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.78 E-value=88 Score=25.89 Aligned_cols=10 Identities=10% Similarity=0.222 Sum_probs=7.1
Q ss_pred hHHHHhhhhh
Q 001025 1170 TRCVCFMCMV 1179 (1184)
Q Consensus 1170 TRAVAkYlq~ 1179 (1184)
.|||+||+-+
T Consensus 38 ~~Cv~Kf~~~ 47 (73)
T d2bska1 38 EHCLQKYLKM 47 (73)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5788888754
No 7
>d2bskb1 g.83.1.1 (B:13-77) Mitochondrial import inner membrane translocase subunit Tim10 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.74 E-value=1.1e+02 Score=24.58 Aligned_cols=10 Identities=30% Similarity=0.494 Sum_probs=6.7
Q ss_pred hHHHHhhhhh
Q 001025 1170 TRCVCFMCMV 1179 (1184)
Q Consensus 1170 TRAVAkYlq~ 1179 (1184)
.|||.||+.+
T Consensus 40 ~~C~~ky~d~ 49 (65)
T d2bskb1 40 DRCVSKYLDI 49 (65)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4677777754
No 8
>d2cy3a_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio desulfuricans, different strains [TaxId: 876]}
Probab=4.06 E-value=2.2e+02 Score=24.24 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=24.8
Q ss_pred CCCCCcccccccCccccCCCCcccccccCcc
Q 001025 591 SDLPAPEKLLSVPEGLLNKPNDLIVESTPEK 621 (1184)
Q Consensus 591 se~p~pEklLs~p~~~~~~~~dll~e~Tp~k 621 (1184)
+|-|..+++|.+|++..-++.-+-+..++..
T Consensus 1 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 31 (118)
T d2cy3a_ 1 ADAPGDDYVISAPEGMKAKPKGDKPGALQKT 31 (118)
T ss_dssp CCCCCTTCEECCCTTCCCCCBTTBCCCCCCB
T ss_pred CCCcccceeecCCCccccCccccccCCCcCC
Confidence 5779999999999998877777777666653
No 9
>d2vxfa1 b.38.1.5 (A:6-85) LSM14 homolog A (Lsm14a) {Zebrafish (Danio rerio) [TaxId: 7955]}
Probab=3.25 E-value=2.2e+02 Score=24.29 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=34.5
Q ss_pred ccccccccccccccccccccccccccCCCCCcchhhhhhhc-CccCccceeccCCC
Q 001025 644 YTESTITVESLNSSESFGVDRTKRNSEFIPDDDDLLSSILV-GRKSSVLKMKPTPP 698 (1184)
Q Consensus 644 ~testlt~qS~~s~es~g~~~s~rT~d~ipDd~dllsSILv-g~~sp~l~i~PTPp 698 (1184)
..+||++|+- |.+||---. ++...||--+.+...|+| |.--=+|.+.-.|+
T Consensus 26 ~~~sTi~L~n---VrsfGTEgR-~~~~~ipp~~~vy~~IvFrgsDIKdL~v~e~p~ 77 (80)
T d2vxfa1 26 TENSTVALAK---VRSFGTEDR-PTDRPIAPRDETFEYIIFRGSDIKDLTVCEPPK 77 (80)
T ss_dssp TTTTEEEEEE---EEECCSTTS-CCSSCCCCCCCCEEEEEEETTTEEEEEESSCCC
T ss_pred cccCEEEeee---eeEeecCCC-CCCCccCCCCcceeEEEEcCcCcceEEeccCCC
Confidence 4588888775 888996554 444668888888888776 33344566655554
No 10
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}
Probab=2.65 E-value=1.7e+02 Score=23.00 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=19.7
Q ss_pred CCcchhhhhccCCchhhHHHhhccCCCcchhhcccchHHHHHHhcCCCC
Q 001025 1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPDV 49 (1184)
Q Consensus 1 MFYS~~LLSKKGPLAtIWLAATL~KKLSKKqIl~vDI~kSCeeIl~Pev 49 (1184)
||-.++|+.| |.+++.+..-.+...++.|++...
T Consensus 1 m~~~qeiI~k---------------~~~g~~Ls~~E~~~~~~~i~~g~~ 34 (70)
T d2tpta1 1 LFLAQEIIRK---------------KRDGHALSDEEIRFFINGIRDNTI 34 (70)
T ss_dssp CCCHHHHHHH---------------HHTTCCCCHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHH---------------HHCCCCcCHHHHHHHHHHHHcCCc
Confidence 6777777765 333333344456667777776544
Done!