BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001026
(1184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|H Chain H, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|G Chain G, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|F Chain F, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 467
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 123/277 (44%), Gaps = 50/277 (18%)
Query: 942 MLTKVKIPLPDL----MFFLELMKVPRVESKLRVFSFKIQFQTQVRN------------- 984
ML+++K DL F + + VPR+ +L FK+QF QV N
Sbjct: 156 MLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACE 215
Query: 985 ----SIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCK 1040
S +++ L +GN +N G+ A GF + L KL DT++ + KMTL+H+L +
Sbjct: 216 ELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAE 275
Query: 1041 I-------QLKFLAE----------EMQAISKGLEKVVQELTASEND-------GEVSGN 1076
+ LKF E + + K L+++ +++ E D +
Sbjct: 276 LCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDK 335
Query: 1077 FCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMF 1136
F + + F+ A+ + L +++S++ L YF DP + E+ L NF MF
Sbjct: 336 FVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMF 395
Query: 1137 VLAHEENCRQLEFERKKAEKAVENEKLKTQKGQSEHL 1173
+ A +EN + R++ E+ + KL +K + E L
Sbjct: 396 LQAVKENQK-----RRETEEKMRRAKLAKEKAEKERL 427
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|B Chain B, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|C Chain C, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|D Chain D, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
Length = 340
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 125/277 (45%), Gaps = 50/277 (18%)
Query: 942 MLTKVKIPLPDL----MFFLELMKVPRVESKLRVFSFKIQFQTQVRN------------- 984
ML+++K DL F + + VPR+ +L FK+QF QV N
Sbjct: 66 MLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACE 125
Query: 985 ----SIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCK 1040
S +++ L +GN +N G+ A GF + L KL DT++ + KMTL+H+L +
Sbjct: 126 ELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAE 185
Query: 1041 I-------QLKF---LAEEMQA-------ISKGLEKVVQELTASEND-------GEVSGN 1076
+ LKF LA +A + K L+++ +++ E D +
Sbjct: 186 LCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDK 245
Query: 1077 FCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMF 1136
F + + F+ A+ + L +++S++ L YF DP + E+ L NF MF
Sbjct: 246 FVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMF 305
Query: 1137 VLAHEENCRQLEFERKKAEKAVENEKLKTQKGQSEHL 1173
+ A +EN + R++ E+ + KL +K + E L
Sbjct: 306 LQAVKENQK-----RRETEEKMRRAKLAKEKAEKERL 337
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|F Chain F, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|G Chain G, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|H Chain H, Autoinhibited Formin Mdia1 Structure
Length = 457
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 123/277 (44%), Gaps = 50/277 (18%)
Query: 942 MLTKVKIPLPDL----MFFLELMKVPRVESKLRVFSFKIQFQTQVRN------------- 984
ML+++K DL F + + VPR+ +L FK+QF QV N
Sbjct: 137 MLSELKEEYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACE 196
Query: 985 ----SIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCK 1040
S +++ L +GN +N G+ A GF + L KL DT++ + KMTL+H+L +
Sbjct: 197 ELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAE 256
Query: 1041 I-------QLKFLAE----------EMQAISKGLEKVVQELTASEND-------GEVSGN 1076
+ LKF E + + K L+++ +++ E D +
Sbjct: 257 LCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDK 316
Query: 1077 FCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMF 1136
F + + F+ A+ + L +++S++ L YF DP + E+ L NF MF
Sbjct: 317 FVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMF 376
Query: 1137 VLAHEENCRQLEFERKKAEKAVENEKLKTQKGQSEHL 1173
+ A +EN + R++ E+ + KL +K + E L
Sbjct: 377 LQAVKENQK-----RRETEEKMRRAKLAKEKAEKERL 408
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|E Chain E, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|C Chain C, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|B Chain B, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
Length = 402
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 101/203 (49%), Gaps = 22/203 (10%)
Query: 982 VRNSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCKI 1041
V++S KLK++++ IL+LGN +N + RG+ GF+L SL L DT++ + KMTL+H++
Sbjct: 205 VKSSQKLKQMLEIILALGNYMN-SSKRGAVYGFKLQSLDLLLDTKSTDRKMTLLHFIALT 263
Query: 1042 ------QLKFLAEEMQAISKG----LEKVVQELTASENDGEVSGNFCKL-----LKEFLS 1086
+L +E+ + K LE V+ ++ E+ C + L+ FLS
Sbjct: 264 VKEKYPELANFWQELHFVEKAAAVSLENVLLDVKELGRGMELIRRECSIHDNSVLRNFLS 323
Query: 1087 YAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQ 1146
EG++ L + +A+ +YFGE P P + F++ + A +EN
Sbjct: 324 TNEGKLDKLQRDAKTAEEAYNAVVRYFGESPKTTPPSVFFPVFVRFIRSYKEAEQEN--- 380
Query: 1147 LEFERKKAEKAVENEKLKTQKGQ 1169
E +K ++ V EK Q+ +
Sbjct: 381 ---EARKKQEEVMREKQLAQEAK 400
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|B Chain B, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|C Chain C, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|D Chain D, Crystal Structure Of Human Daam1 Fh2
Length = 419
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/311 (21%), Positives = 125/311 (40%), Gaps = 92/311 (29%)
Query: 924 KMRGLAHIELRRANNCEIMLTKVKI----------------PLP---------------- 951
K++ L+ I+ RRA NC I+L+++K+ LP
Sbjct: 88 KVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSD 147
Query: 952 -DLM---------------FFLELMKVPRVESKLRVFSFKIQFQTQVRN----------- 984
DL+ F E+ ++ + +L+ FK +F +V
Sbjct: 148 IDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSG 207
Query: 985 ------SIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNK-MTLMHY 1037
S LK++++ +L+ GN +N G RG+A GF++ SL K+ DT++ +K +TL+HY
Sbjct: 208 SEEVFRSGALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLNKIADTKSSIDKNITLLHY 266
Query: 1038 L------------------------CKIQLKFLAEEMQAISKGLEKVVQELTASENDGEV 1073
L K+ + L +E+ + GL+ V EL ++
Sbjct: 267 LITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQPPQ 326
Query: 1074 SGN-FCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNF 1132
G+ F ++ +F++ A + L + ++FGE+ + ++ F
Sbjct: 327 PGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGIFDQF 386
Query: 1133 VKMFVLAHEEN 1143
++ A +EN
Sbjct: 387 LQAVSEAKQEN 397
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment
Length = 483
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/311 (21%), Positives = 125/311 (40%), Gaps = 92/311 (29%)
Query: 924 KMRGLAHIELRRANNCEIMLTKVKI----------------PLP---------------- 951
K++ L+ I+ RRA NC I+L+++K+ LP
Sbjct: 86 KVKELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSD 145
Query: 952 -DLM---------------FFLELMKVPRVESKLRVFSFKIQFQTQVRN----------- 984
DL+ F E+ ++ + +L+ FK +F +V
Sbjct: 146 IDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSG 205
Query: 985 ------SIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNK-MTLMHY 1037
S LK++++ +L+ GN +N G RG+A GF++ SL K+ DT++ +K +TL+HY
Sbjct: 206 SEEVFRSGALKQLLEVVLAFGNYMNKGQ-RGNAYGFKISSLNKIADTKSSIDKNITLLHY 264
Query: 1038 L------------------------CKIQLKFLAEEMQAISKGLEKVVQELTASENDGEV 1073
L K+ + L +E+ + GL+ V EL ++
Sbjct: 265 LITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQPPQ 324
Query: 1074 SGN-FCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNF 1132
G+ F ++ +F++ A + L + ++FGE+ + ++ F
Sbjct: 325 PGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGIFDQF 384
Query: 1133 VKMFVLAHEEN 1143
++ A +EN
Sbjct: 385 LQAVSEAKQEN 395
>pdb|1Y64|B Chain B, Bni1p Formin Homology 2 Domain Complexed With Atp-actin
Length = 443
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 982 VRNSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCKI 1041
++ S L+ + IL++GN +N + + A GF+L +L +LT + N MT ++Y+ KI
Sbjct: 233 LQESDNLRNVFNVILAVGNFMNDTSKQ--AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKI 290
>pdb|1UX4|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
pdb|1UX4|B Chain B, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
Length = 410
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 982 VRNSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCKI 1041
++ S L+ + IL++GN +N + + A GF+L +L +LT + N MT ++Y+ KI
Sbjct: 204 LQESDNLRNVFNVILAVGNFMNDTSKQ--AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKI 261
>pdb|1UX5|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Flexibly Tethered Dimer Architecture
Length = 411
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 982 VRNSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCKI 1041
++ S L+ + IL++GN +N + + A GF+L +L +LT + N MT ++Y+ KI
Sbjct: 210 LQESDNLRNVFNVILAVGNFMNDTSKQ--AQGFKLSTLQRLTFIKDTTNSMTFLNYVEKI 267
>pdb|1D5R|A Chain A, Crystal Structure Of The Pten Tumor Suppressor
Length = 324
Score = 35.0 bits (79), Expect = 0.27, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 79 SEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFML 138
++++ V YP P L E + F + WLS +V +HC + G M+
Sbjct: 73 AKFNCRVAQYPFEDHNPPQL--ELIKPFCEDLDQWLSEDDNHVAAIHC-KAGKGRTGVMI 129
Query: 139 AALLIYRKQFTGEQKTLD 156
A L++R +F Q+ LD
Sbjct: 130 CAYLLHRGKFLKAQEALD 147
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 337 VQEIFSNVDWLDPKLDVAVNMLQHFTPSNFIQENLETALNAEKGSIMIESALEKDKEQL 395
V+EI S D++ P LD A ++ +P N+++ LE + A ++ E + D E++
Sbjct: 199 VEEIISRADFVKPSLDDARHLFGPDSPENYVKRYLELGVKAVILTLGEEGVIASDGEEI 257
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,198,319
Number of Sequences: 62578
Number of extensions: 905513
Number of successful extensions: 2267
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2249
Number of HSP's gapped (non-prelim): 18
length of query: 1184
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1074
effective length of database: 8,089,757
effective search space: 8688399018
effective search space used: 8688399018
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)