Query 001026
Match_columns 1184
No_of_seqs 539 out of 2050
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 13:45:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001026.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001026hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2283 Clathrin coat dissocia 100.0 3.2E-49 6.9E-54 459.5 17.2 274 4-306 3-314 (434)
2 KOG1924 RhoA GTPase effector D 100.0 3.8E-46 8.3E-51 433.2 32.0 228 928-1155 693-1008(1102)
3 smart00498 FH2 Formin Homology 100.0 1.7E-37 3.8E-42 368.9 24.6 231 926-1157 72-391 (432)
4 PF02181 FH2: Formin Homology 100.0 6.9E-35 1.5E-39 341.1 19.2 212 926-1137 71-370 (370)
5 KOG1923 Rac1 GTPase effector F 100.0 1.8E-30 3.9E-35 305.9 19.6 221 926-1156 435-746 (830)
6 KOG1925 Rac1 GTPase effector F 99.9 1.9E-24 4.2E-29 242.9 22.6 239 928-1170 348-677 (817)
7 KOG1922 Rho GTPase effector BN 99.9 6.9E-23 1.5E-27 262.9 28.8 227 927-1153 462-796 (833)
8 PF10409 PTEN_C2: C2 domain of 99.9 4.8E-24 1E-28 214.7 12.8 120 179-308 12-134 (134)
9 KOG1924 RhoA GTPase effector D 99.7 3.6E-17 7.7E-22 192.8 19.3 139 1041-1182 862-1028(1102)
10 PTZ00242 protein tyrosine phos 99.4 1.2E-12 2.6E-17 136.8 13.9 128 12-159 7-136 (166)
11 PTZ00393 protein tyrosine phos 99.1 2.1E-10 4.6E-15 124.4 12.0 119 17-158 88-206 (241)
12 PHA03247 large tegument protei 99.1 7E-07 1.5E-11 118.3 43.5 20 1046-1065 3114-3133(3151)
13 KOG1720 Protein tyrosine phosp 99.1 6.9E-10 1.5E-14 116.4 11.4 132 12-158 49-184 (225)
14 PF05706 CDKN3: Cyclin-depende 98.8 1.1E-08 2.4E-13 105.2 8.4 124 20-155 40-168 (168)
15 smart00195 DSPc Dual specifici 98.8 5.4E-08 1.2E-12 98.3 13.0 115 17-159 2-116 (138)
16 cd00127 DSPc Dual specificity 98.6 4.9E-07 1.1E-11 91.0 12.3 117 16-159 2-119 (139)
17 PF00782 DSPc: Dual specificit 98.5 2.3E-07 4.9E-12 93.0 8.5 101 48-159 11-111 (133)
18 COG2453 CDC14 Predicted protei 98.5 3.5E-07 7.5E-12 97.2 9.6 72 82-158 72-143 (180)
19 PRK12361 hypothetical protein; 98.4 2E-06 4.3E-11 106.6 14.2 132 15-170 94-233 (547)
20 smart00404 PTPc_motif Protein 98.3 1.4E-06 3.1E-11 82.7 7.0 57 91-148 9-67 (105)
21 smart00012 PTPc_DSPc Protein t 98.3 1.4E-06 3.1E-11 82.7 7.0 57 91-148 9-67 (105)
22 KOG1719 Dual specificity phosp 98.2 2.5E-06 5.5E-11 85.8 6.6 59 97-159 89-147 (183)
23 KOG3671 Actin regulatory prote 97.9 0.00016 3.6E-09 84.4 15.6 6 941-946 506-511 (569)
24 PRK15375 pathogenicity island 97.7 9.6E-05 2.1E-09 87.9 9.6 74 83-158 423-504 (535)
25 KOG3671 Actin regulatory prote 97.6 0.00096 2.1E-08 78.2 15.7 7 333-339 131-137 (569)
26 KOG2836 Protein tyrosine phosp 97.5 0.0018 3.9E-08 64.1 12.9 128 10-158 6-133 (173)
27 cd00047 PTPc Protein tyrosine 97.5 0.0003 6.5E-09 77.4 8.5 66 92-158 138-208 (231)
28 smart00194 PTPc Protein tyrosi 97.3 0.00068 1.5E-08 76.0 9.3 66 91-158 165-235 (258)
29 PF03162 Y_phosphatase2: Tyros 97.0 0.0015 3.2E-08 68.6 7.4 112 13-146 4-117 (164)
30 PF00102 Y_phosphatase: Protei 96.9 0.0015 3.2E-08 71.4 6.3 66 91-158 142-212 (235)
31 KOG2386 mRNA capping enzyme, g 96.8 0.0026 5.6E-08 74.4 7.5 120 29-159 36-162 (393)
32 PLN02727 NAD kinase 96.8 0.0025 5.4E-08 80.8 7.5 94 43-147 270-368 (986)
33 TIGR01244 conserved hypothetic 96.5 0.02 4.4E-07 58.1 11.0 115 15-158 1-121 (135)
34 PHA02747 protein tyrosine phos 96.4 0.0053 1.1E-07 71.1 6.6 60 84-146 183-255 (312)
35 PF14566 PTPlike_phytase: Inos 96.4 0.0032 7E-08 65.0 4.3 59 80-143 90-148 (149)
36 PHA02746 protein tyrosine phos 96.2 0.0072 1.6E-07 70.3 6.5 59 84-145 201-272 (323)
37 PF13350 Y_phosphatase3: Tyros 96.2 0.0064 1.4E-07 63.6 5.1 37 109-147 115-151 (164)
38 PHA02738 hypothetical protein; 96.1 0.01 2.2E-07 68.9 7.0 60 84-146 178-253 (320)
39 PHA02740 protein tyrosine phos 96.1 0.012 2.5E-07 67.8 7.3 60 84-146 177-247 (298)
40 PHA02742 protein tyrosine phos 96.0 0.014 3.1E-07 67.3 7.6 62 84-146 182-255 (303)
41 KOG0792 Protein tyrosine phosp 96.0 0.012 2.5E-07 75.0 7.1 57 83-144 1031-1087(1144)
42 COG5599 PTP2 Protein tyrosine 95.8 0.0067 1.5E-07 66.8 3.3 52 91-146 192-244 (302)
43 KOG1716 Dual specificity phosp 95.5 0.026 5.6E-07 64.6 7.0 47 110-159 147-193 (285)
44 KOG1572 Predicted protein tyro 95.0 0.099 2.1E-06 57.1 8.8 95 48-148 78-176 (249)
45 KOG0790 Protein tyrosine phosp 94.9 0.023 4.9E-07 66.2 4.0 72 93-169 425-515 (600)
46 KOG0791 Protein tyrosine phosp 94.6 0.087 1.9E-06 60.8 7.7 53 91-145 259-313 (374)
47 KOG0994 Extracellular matrix g 94.5 0.38 8.2E-06 61.8 13.3 21 987-1007 1469-1489(1758)
48 COG2365 Protein tyrosine/serin 94.4 0.082 1.8E-06 59.4 6.8 39 112-151 129-167 (249)
49 PF04273 DUF442: Putative phos 93.4 0.19 4.2E-06 49.4 6.4 91 15-132 1-98 (110)
50 KOG1718 Dual specificity phosp 93.3 0.27 5.9E-06 51.1 7.5 112 6-144 7-118 (198)
51 PRK11637 AmiB activator; Provi 92.6 1.2 2.7E-05 53.9 13.3 34 1079-1112 99-132 (428)
52 KOG1925 Rac1 GTPase effector F 92.4 7.6 0.00017 46.5 18.4 34 1117-1150 543-576 (817)
53 KOG4228 Protein tyrosine phosp 92.2 0.2 4.3E-06 65.0 5.9 60 85-147 981-1045(1087)
54 KOG1717 Dual specificity phosp 92.2 0.34 7.4E-06 53.6 6.9 54 104-159 234-289 (343)
55 KOG1923 Rac1 GTPase effector F 91.8 12 0.00026 47.4 20.1 12 1029-1040 524-535 (830)
56 PF14671 DSPn: Dual specificit 91.5 0.24 5.2E-06 50.7 4.6 66 93-159 39-108 (141)
57 KOG2002 TPR-containing nuclear 91.3 2.7 5.9E-05 54.1 14.3 13 1028-1040 712-724 (1018)
58 PRK11637 AmiB activator; Provi 91.3 3.2 6.9E-05 50.4 14.8 26 1078-1103 105-130 (428)
59 KOG0789 Protein tyrosine phosp 91.2 0.32 6.9E-06 58.3 6.0 59 84-147 263-326 (415)
60 cd00179 SynN Syntaxin N-termin 90.3 9.5 0.00021 39.1 15.2 62 1046-1107 11-72 (151)
61 PF12325 TMF_TATA_bd: TATA ele 90.3 6.5 0.00014 39.4 13.2 54 1086-1141 64-117 (120)
62 KOG0793 Protein tyrosine phosp 89.4 0.29 6.4E-06 60.0 3.6 53 99-153 908-960 (1004)
63 KOG1853 LIS1-interacting prote 88.4 8.7 0.00019 42.4 13.4 66 1079-1144 80-150 (333)
64 PF10234 Cluap1: Clusterin-ass 87.9 37 0.00081 38.6 18.5 59 982-1040 75-142 (267)
65 cd07667 BAR_SNX30 The Bin/Amph 87.7 8.8 0.00019 42.9 13.3 22 983-1005 5-26 (240)
66 KOG2007 Cysteinyl-tRNA synthet 87.7 7.3 0.00016 47.2 13.3 12 190-201 29-40 (586)
67 smart00498 FH2 Formin Homology 87.6 5 0.00011 48.8 12.6 101 1041-1142 324-430 (432)
68 COG5350 Predicted protein tyro 86.9 3 6.6E-05 43.0 8.4 113 14-147 7-122 (172)
69 KOG4228 Protein tyrosine phosp 86.9 0.35 7.6E-06 62.8 2.2 43 92-138 703-748 (1087)
70 KOG0243 Kinesin-like protein [ 86.7 5.4 0.00012 52.3 12.5 118 990-1107 318-472 (1041)
71 KOG1830 Wiskott Aldrich syndro 86.3 13 0.00029 43.9 14.1 7 323-329 142-148 (518)
72 cd07598 BAR_FAM92 The Bin/Amph 86.3 6.1 0.00013 43.4 11.1 98 1042-1143 5-106 (211)
73 PF04108 APG17: Autophagy prot 85.7 15 0.00032 44.5 15.1 27 1123-1149 335-361 (412)
74 COG4942 Membrane-bound metallo 85.5 23 0.00049 42.6 15.9 50 1043-1099 61-110 (420)
75 KOG1830 Wiskott Aldrich syndro 85.2 14 0.00031 43.6 13.7 22 283-304 5-26 (518)
76 smart00806 AIP3 Actin interact 84.2 12 0.00027 44.7 13.0 62 1042-1103 251-323 (426)
77 PF06160 EzrA: Septation ring 84.2 7.9 0.00017 48.8 12.3 92 1011-1102 240-332 (560)
78 PF10168 Nup88: Nuclear pore c 83.7 15 0.00033 47.5 14.6 51 1086-1136 596-648 (717)
79 KOG0976 Rho/Rac1-interacting s 83.6 8.7 0.00019 48.5 11.6 14 1008-1021 343-358 (1265)
80 PF09726 Macoilin: Transmembra 83.6 5.7 0.00012 51.0 10.7 12 1046-1057 423-434 (697)
81 KOG0994 Extracellular matrix g 83.5 18 0.00039 47.6 14.5 15 241-255 567-581 (1758)
82 KOG0163 Myosin class VI heavy 82.9 37 0.00081 43.0 16.4 25 120-145 208-232 (1259)
83 PF09602 PhaP_Bmeg: Polyhydrox 82.0 59 0.0013 34.3 15.3 59 1091-1154 79-137 (165)
84 smart00503 SynN Syntaxin N-ter 81.7 24 0.00051 34.4 12.2 63 1045-1107 12-74 (117)
85 KOG4673 Transcription factor T 81.5 14 0.00031 46.0 12.2 55 1089-1145 903-957 (961)
86 PF10147 CR6_interact: Growth 81.5 56 0.0012 36.1 15.7 40 1079-1118 131-174 (217)
87 cd07637 BAR_ACAP3 The Bin/Amph 81.3 13 0.00029 40.4 11.1 27 1043-1069 4-30 (200)
88 PLN00047 photosystem II biogen 81.2 13 0.00029 42.2 11.1 52 988-1040 77-133 (283)
89 COG4372 Uncharacterized protei 80.6 17 0.00037 42.6 11.9 68 1043-1110 90-157 (499)
90 PRK04778 septation ring format 79.9 15 0.00032 46.4 12.5 58 1009-1066 242-300 (569)
91 PF14523 Syntaxin_2: Syntaxin- 79.8 43 0.00094 31.9 13.0 89 1048-1147 3-91 (102)
92 TIGR02473 flagell_FliJ flagell 79.7 45 0.00098 33.6 13.9 59 1048-1107 34-92 (141)
93 KOG0979 Structural maintenance 79.4 22 0.00048 46.4 13.5 26 1015-1040 157-182 (1072)
94 PF04156 IncA: IncA protein; 79.1 25 0.00054 37.7 12.3 58 1046-1110 93-150 (191)
95 PF03915 AIP3: Actin interacti 79.1 7.4 0.00016 47.0 9.0 31 1083-1113 292-322 (424)
96 PF15066 CAGE1: Cancer-associa 78.6 42 0.00091 40.5 14.5 49 1046-1101 388-436 (527)
97 KOG0163 Myosin class VI heavy 78.4 21 0.00046 45.0 12.4 11 122-132 147-157 (1259)
98 COG1340 Uncharacterized archae 78.4 93 0.002 35.9 16.7 16 988-1003 88-103 (294)
99 PF12729 4HB_MCP_1: Four helix 78.0 19 0.00041 36.7 10.7 24 1092-1115 111-134 (181)
100 KOG4302 Microtubule-associated 78.0 74 0.0016 40.6 17.3 87 1032-1118 99-202 (660)
101 cd07588 BAR_Amphiphysin The Bi 77.6 44 0.00095 36.8 13.7 95 1043-1148 21-115 (211)
102 PRK13266 Thf1-like protein; Re 77.2 21 0.00045 39.6 11.0 52 988-1040 26-82 (225)
103 KOG1029 Endocytic adaptor prot 76.7 55 0.0012 41.7 15.2 49 1013-1061 450-506 (1118)
104 KOG0995 Centromere-associated 76.1 72 0.0016 39.6 15.9 79 1063-1144 208-286 (581)
105 KOG4121 Nuclear pore complex, 75.6 23 0.0005 46.4 12.1 120 1029-1152 773-898 (1128)
106 PF06008 Laminin_I: Laminin Do 75.5 68 0.0015 36.4 15.1 93 1043-1139 47-139 (264)
107 KOG2256 Predicted protein invo 74.6 29 0.00063 43.6 12.3 112 982-1098 456-577 (661)
108 COG1340 Uncharacterized archae 74.5 26 0.00057 40.2 11.1 20 1046-1065 136-155 (294)
109 KOG0810 SNARE protein Syntaxin 74.1 83 0.0018 36.5 15.2 105 1044-1148 43-151 (297)
110 cd01518 RHOD_YceA Member of th 74.1 13 0.00028 35.3 7.6 79 45-146 7-85 (101)
111 cd07603 BAR_ACAPs The Bin/Amph 74.1 15 0.00032 40.1 8.9 26 1043-1068 4-29 (200)
112 cd07606 BAR_SFC_plant The Bin/ 74.0 45 0.00097 36.5 12.5 22 1044-1065 4-25 (202)
113 PF07200 Mod_r: Modifier of ru 73.3 37 0.0008 35.0 11.3 48 1093-1149 99-146 (150)
114 PF11264 ThylakoidFormat: Thyl 73.2 37 0.00079 37.5 11.5 52 988-1040 21-77 (216)
115 PF08580 KAR9: Yeast cortical 73.2 48 0.001 42.8 14.4 121 990-1116 141-268 (683)
116 cd07639 BAR_ACAP1 The Bin/Amph 72.8 67 0.0015 35.1 13.4 43 1043-1085 4-50 (200)
117 PF12825 DUF3818: Domain of un 72.5 20 0.00043 42.3 10.0 97 982-1100 51-152 (341)
118 KOG0804 Cytoplasmic Zn-finger 72.5 1E+02 0.0022 37.3 15.5 53 1049-1101 348-400 (493)
119 cd07612 BAR_Bin2 The Bin/Amphi 72.3 20 0.00043 39.4 9.2 25 1124-1148 91-115 (211)
120 COG3883 Uncharacterized protei 72.2 80 0.0017 35.9 14.1 23 1081-1103 78-100 (265)
121 PF10455 BAR_2: Bin/amphiphysi 72.2 63 0.0014 37.3 13.6 85 1031-1115 119-217 (289)
122 KOG4848 Extracellular matrix-a 72.1 1.5E+02 0.0032 32.0 14.9 16 1101-1116 168-183 (225)
123 KOG0996 Structural maintenance 72.0 1.1E+02 0.0024 41.1 16.8 48 986-1040 206-258 (1293)
124 cd07639 BAR_ACAP1 The Bin/Amph 71.9 52 0.0011 36.0 12.3 10 1079-1088 61-70 (200)
125 cd07601 BAR_APPL The Bin/Amphi 71.5 69 0.0015 35.4 13.3 14 1131-1144 109-122 (215)
126 PF06013 WXG100: Proteins of 1 71.5 64 0.0014 28.8 11.3 59 1079-1141 7-65 (86)
127 PRK07720 fliJ flagellar biosyn 71.5 62 0.0014 33.2 12.4 93 1012-1107 3-95 (146)
128 PRK00142 putative rhodanese-re 71.1 16 0.00034 42.7 8.8 105 17-146 89-195 (314)
129 KOG2072 Translation initiation 70.5 66 0.0014 41.5 14.1 19 328-346 246-264 (988)
130 KOG0979 Structural maintenance 70.4 36 0.00078 44.7 12.1 9 1032-1040 141-149 (1072)
131 PF09325 Vps5: Vps5 C terminal 70.4 90 0.002 34.3 14.3 92 1049-1144 136-227 (236)
132 KOG1962 B-cell receptor-associ 70.0 1.1E+02 0.0024 33.8 14.2 53 1080-1148 155-207 (216)
133 KOG2150 CCR4-NOT transcription 69.8 50 0.0011 41.0 12.6 100 1044-1145 41-143 (575)
134 COG4942 Membrane-bound metallo 69.8 1.1E+02 0.0024 37.0 15.3 16 987-1002 112-127 (420)
135 KOG2357 Uncharacterized conser 69.3 23 0.00049 42.2 9.3 28 1129-1156 376-403 (440)
136 PF07946 DUF1682: Protein of u 68.9 9 0.0002 44.8 6.2 14 1165-1178 306-319 (321)
137 cd07643 I-BAR_IMD_MIM Inverse 68.4 69 0.0015 35.6 12.2 13 1016-1028 49-61 (231)
138 cd07641 BAR_ASAP1 The Bin/Amph 68.3 19 0.0004 39.5 7.8 20 1047-1066 8-27 (215)
139 PF10168 Nup88: Nuclear pore c 68.0 81 0.0018 41.1 14.9 25 1080-1104 597-621 (717)
140 KOG0995 Centromere-associated 67.8 1.9E+02 0.0042 36.1 16.9 19 998-1016 395-415 (581)
141 KOG4722 Zn-finger protein [Gen 67.8 35 0.00077 40.3 10.3 8 1109-1116 365-372 (672)
142 PF04156 IncA: IncA protein; 67.4 1.1E+02 0.0024 32.7 13.8 18 1049-1066 82-99 (191)
143 PRK10132 hypothetical protein; 67.1 33 0.00071 33.9 8.6 74 1043-1118 14-87 (108)
144 PF07888 CALCOCO1: Calcium bin 66.8 69 0.0015 40.0 13.2 16 1001-1016 94-110 (546)
145 PF06013 WXG100: Proteins of 1 66.5 79 0.0017 28.2 10.8 61 1044-1105 17-77 (86)
146 cd07604 BAR_ASAPs The Bin/Amph 66.5 25 0.00054 38.9 8.6 23 1046-1068 7-29 (215)
147 TIGR02894 DNA_bind_RsfA transc 66.4 60 0.0013 34.1 10.7 24 995-1021 33-56 (161)
148 PF07106 TBPIP: Tat binding pr 66.4 98 0.0021 32.6 12.9 86 1043-1148 81-166 (169)
149 KOG0999 Microtubule-associated 66.2 35 0.00076 41.8 10.2 22 1123-1144 103-124 (772)
150 PF03999 MAP65_ASE1: Microtubu 66.1 7.7 0.00017 49.4 5.3 40 1078-1117 281-320 (619)
151 smart00503 SynN Syntaxin N-ter 66.1 82 0.0018 30.5 11.5 72 1043-1114 3-74 (117)
152 cd07611 BAR_Amphiphysin_I_II T 65.9 73 0.0016 35.1 11.9 27 1123-1149 90-116 (211)
153 cd07603 BAR_ACAPs The Bin/Amph 65.8 99 0.0021 33.8 13.0 44 1042-1088 10-53 (200)
154 PHA02562 46 endonuclease subun 65.6 62 0.0014 40.5 13.2 22 1123-1144 298-319 (562)
155 KOG0996 Structural maintenance 65.4 87 0.0019 42.0 14.1 70 1046-1115 403-472 (1293)
156 PF06008 Laminin_I: Laminin Do 65.4 1.3E+02 0.0027 34.2 14.4 22 1045-1066 91-112 (264)
157 cd07627 BAR_Vps5p The Bin/Amph 65.1 1.7E+02 0.0037 32.2 14.9 91 1048-1142 115-205 (216)
158 cd07602 BAR_RhoGAP_OPHN1-like 64.9 1.2E+02 0.0027 33.3 13.4 24 1043-1066 4-27 (207)
159 TIGR02131 phaP_Bmeg polyhydrox 64.8 50 0.0011 33.5 9.4 16 1095-1110 83-98 (165)
160 PF06602 Myotub-related: Myotu 64.7 13 0.00028 44.1 6.5 48 118-169 230-277 (353)
161 COG5185 HEC1 Protein involved 64.7 1.7E+02 0.0038 35.5 15.2 47 1064-1110 245-291 (622)
162 PRK10361 DNA recombination pro 64.5 66 0.0014 39.6 12.4 67 1079-1145 88-161 (475)
163 cd07606 BAR_SFC_plant The Bin/ 64.4 79 0.0017 34.6 11.9 22 1079-1100 15-36 (202)
164 cd07602 BAR_RhoGAP_OPHN1-like 64.0 1.1E+02 0.0025 33.6 13.0 16 1081-1096 18-33 (207)
165 PF08580 KAR9: Yeast cortical 63.7 81 0.0018 40.8 13.6 110 986-1107 4-119 (683)
166 PTZ00399 cysteinyl-tRNA-synthe 63.6 78 0.0017 40.8 13.4 7 194-200 38-44 (651)
167 KOG4809 Rab6 GTPase-interactin 63.3 1.5E+02 0.0032 36.8 14.6 62 1044-1113 390-451 (654)
168 cd07590 BAR_Bin3 The Bin/Amphi 63.2 1.7E+02 0.0036 32.7 14.3 24 1124-1147 95-118 (225)
169 cd07596 BAR_SNX The Bin/Amphip 63.1 1.1E+02 0.0024 32.8 13.0 58 1049-1106 118-175 (218)
170 PRK09841 cryptic autophosphory 63.0 1.1E+02 0.0023 40.1 14.9 71 1043-1118 269-339 (726)
171 cd07638 BAR_ACAP2 The Bin/Amph 62.9 1.5E+02 0.0033 32.5 13.6 26 1043-1068 4-29 (200)
172 cd07599 BAR_Rvs167p The Bin/Am 62.6 1.5E+02 0.0033 32.4 14.0 16 1048-1063 9-24 (216)
173 PF04949 Transcrip_act: Transc 62.6 1.6E+02 0.0034 30.7 12.5 86 1051-1141 62-147 (159)
174 PRK11519 tyrosine kinase; Prov 62.5 1.1E+02 0.0024 40.0 14.8 71 1043-1118 269-339 (719)
175 PF06730 FAM92: FAM92 protein; 62.5 62 0.0013 35.8 10.5 43 1042-1084 12-58 (219)
176 PF09548 Spore_III_AB: Stage I 62.1 1.6E+02 0.0034 31.3 13.4 29 1041-1069 21-49 (170)
177 cd07636 BAR_GRAF The Bin/Amphi 62.0 33 0.00072 37.6 8.4 23 1125-1147 94-116 (207)
178 KOG4673 Transcription factor T 62.0 1.3E+02 0.0029 38.0 14.1 18 1085-1102 411-428 (961)
179 KOG1029 Endocytic adaptor prot 61.7 67 0.0014 41.1 11.6 13 332-344 13-25 (1118)
180 PF05615 THOC7: Tho complex su 61.7 94 0.002 31.7 11.3 96 984-1104 14-109 (139)
181 PRK02224 chromosome segregatio 61.6 1.5E+02 0.0033 39.4 16.3 18 1080-1097 416-433 (880)
182 cd07666 BAR_SNX7 The Bin/Amphi 61.4 81 0.0018 35.6 11.5 8 986-993 8-15 (243)
183 KOG4637 Adaptor for phosphoino 60.9 74 0.0016 37.4 11.1 47 1041-1090 146-192 (464)
184 KOG0018 Structural maintenance 60.3 70 0.0015 42.4 11.9 70 1043-1115 692-765 (1141)
185 KOG0971 Microtubule-associated 60.1 1E+02 0.0023 40.1 13.0 83 1050-1142 398-480 (1243)
186 PF05546 She9_MDM33: She9 / Md 60.0 1.8E+02 0.004 31.9 13.4 17 1128-1144 90-106 (207)
187 KOG0933 Structural maintenance 59.9 1.6E+02 0.0036 39.0 14.9 23 1082-1104 747-769 (1174)
188 PRK10869 recombination and rep 59.9 65 0.0014 40.7 11.7 66 1043-1115 263-328 (553)
189 PF08397 IMD: IRSp53/MIM homol 59.8 2.6E+02 0.0057 30.8 15.2 31 1123-1153 144-174 (219)
190 PF04420 CHD5: CHD5-like prote 59.8 39 0.00084 35.6 8.3 65 1044-1112 36-102 (161)
191 COG1579 Zn-ribbon protein, pos 59.5 2.4E+02 0.0052 31.8 14.6 7 1051-1057 41-47 (239)
192 cd07638 BAR_ACAP2 The Bin/Amph 59.5 1.4E+02 0.0031 32.7 12.7 22 1042-1063 10-31 (200)
193 KOG2891 Surface glycoprotein [ 59.5 1.7E+02 0.0038 33.0 13.3 23 1031-1053 220-242 (445)
194 cd07593 BAR_MUG137_fungi The B 59.0 90 0.002 34.5 11.2 29 1087-1115 146-174 (215)
195 KOG4460 Nuclear pore complex, 58.8 3.7E+02 0.008 33.5 16.7 38 1081-1118 614-651 (741)
196 PF08397 IMD: IRSp53/MIM homol 58.6 1.9E+02 0.0041 31.9 13.9 30 1124-1153 84-113 (219)
197 KOG0976 Rho/Rac1-interacting s 58.5 2.3E+02 0.005 36.7 15.3 23 1043-1065 101-123 (1265)
198 PF04740 LXG: LXG domain of WX 58.3 2.1E+02 0.0046 30.7 14.1 61 1046-1106 15-77 (204)
199 TIGR02677 conserved hypothetic 58.2 3.6E+02 0.0077 33.7 17.4 53 1087-1139 142-203 (494)
200 COG5185 HEC1 Protein involved 58.2 2.4E+02 0.0052 34.4 14.8 9 1032-1040 231-239 (622)
201 PF06120 Phage_HK97_TLTM: Tail 58.2 2.2E+02 0.0047 33.3 14.4 65 1079-1143 77-143 (301)
202 cd07634 BAR_GAP10-like The Bin 58.0 1.8E+02 0.0039 32.1 13.1 10 1076-1085 41-50 (207)
203 cd07307 BAR The Bin/Amphiphysi 57.8 45 0.00098 34.5 8.5 6 1101-1106 76-81 (194)
204 KOG3878 Protein involved in ma 57.7 8.8 0.00019 43.9 3.2 24 1010-1033 26-51 (469)
205 PF06632 XRCC4: DNA double-str 57.6 30 0.00065 40.8 7.7 77 1033-1109 130-213 (342)
206 KOG0243 Kinesin-like protein [ 57.6 97 0.0021 41.3 12.7 23 1078-1100 450-472 (1041)
207 PF10146 zf-C4H2: Zinc finger- 57.5 1.3E+02 0.0029 33.6 12.3 9 1085-1093 34-42 (230)
208 KOG2273 Membrane coat complex 57.4 2.5E+02 0.0053 35.0 16.2 25 982-1006 214-243 (503)
209 cd01531 Acr2p Eukaryotic arsen 57.2 69 0.0015 31.0 9.1 24 117-142 60-83 (113)
210 TIGR02833 spore_III_AB stage I 57.1 2.4E+02 0.0052 30.0 13.7 29 1041-1069 21-49 (170)
211 KOG2391 Vacuolar sorting prote 57.1 3.9E+02 0.0084 31.5 17.2 26 1104-1129 313-340 (365)
212 KOG4603 TBP-1 interacting prot 56.8 2.7E+02 0.0059 29.6 13.8 24 1086-1109 119-142 (201)
213 KOG1962 B-cell receptor-associ 56.5 41 0.00088 37.1 7.9 26 1085-1110 174-199 (216)
214 PRK09039 hypothetical protein; 56.5 1.2E+02 0.0026 35.9 12.6 22 1045-1066 43-64 (343)
215 TIGR01010 BexC_CtrB_KpsE polys 56.3 2.4E+02 0.0053 33.3 15.3 69 1044-1117 173-241 (362)
216 cd07636 BAR_GRAF The Bin/Amphi 56.2 2.3E+02 0.005 31.3 13.6 13 1047-1059 8-20 (207)
217 PTZ00332 paraflagellar rod pro 55.9 1.4E+02 0.003 36.6 12.5 32 1086-1117 215-246 (589)
218 PF15290 Syntaphilin: Golgi-lo 55.7 45 0.00097 37.8 8.1 34 1082-1115 116-153 (305)
219 PF07083 DUF1351: Protein of u 55.5 2.2E+02 0.0048 31.5 13.6 55 1044-1100 45-99 (215)
220 PRK08307 stage III sporulation 55.3 2.7E+02 0.0058 29.7 13.7 52 1042-1093 23-79 (171)
221 PRK10404 hypothetical protein; 55.3 71 0.0015 31.1 8.6 73 1044-1118 8-81 (101)
222 KOG0250 DNA repair protein RAD 55.1 55 0.0012 43.5 9.9 17 983-999 204-220 (1074)
223 KOG1118 Lysophosphatidic acid 54.9 91 0.002 36.0 10.4 78 963-1040 57-140 (366)
224 cd07592 BAR_Endophilin_A The B 54.9 1E+02 0.0023 34.2 10.9 28 1088-1115 155-182 (223)
225 KOG1532 GTPase XAB1, interacts 54.9 1E+02 0.0022 35.4 10.7 35 1121-1155 251-285 (366)
226 PF13949 ALIX_LYPXL_bnd: ALIX 54.7 1.7E+02 0.0038 33.3 13.4 67 1075-1141 193-262 (296)
227 cd07635 BAR_GRAF2 The Bin/Amph 54.7 61 0.0013 35.6 8.9 8 1049-1056 10-17 (207)
228 KOG3647 Predicted coiled-coil 54.6 1.9E+02 0.0041 32.8 12.5 29 1012-1040 55-85 (338)
229 KOG4302 Microtubule-associated 54.5 81 0.0018 40.3 11.1 74 1075-1148 46-120 (660)
230 PF06705 SF-assemblin: SF-asse 54.4 3.2E+02 0.0068 30.7 15.0 27 982-1008 30-56 (247)
231 KOG4848 Extracellular matrix-a 54.3 44 0.00095 35.8 7.3 20 1140-1159 191-210 (225)
232 COG4575 ElaB Uncharacterized c 54.3 79 0.0017 30.9 8.4 73 1044-1118 11-84 (104)
233 PF08855 DUF1825: Domain of un 53.9 2.3E+02 0.005 28.1 11.6 83 1046-1130 10-97 (108)
234 TIGR00606 rad50 rad50. This fa 53.9 1.9E+02 0.0041 40.6 15.7 57 1079-1137 259-315 (1311)
235 PF07793 DUF1631: Protein of u 53.9 78 0.0017 41.3 11.4 79 1096-1182 426-504 (729)
236 KOG3771 Amphiphysin [Intracell 53.6 74 0.0016 38.7 10.0 22 1043-1064 39-60 (460)
237 PF15254 CCDC14: Coiled-coil d 53.5 58 0.0012 41.7 9.4 48 1076-1123 522-569 (861)
238 cd07625 BAR_Vps17p The Bin/Amp 53.5 3.7E+02 0.008 30.2 17.0 92 1047-1153 128-219 (230)
239 cd07617 BAR_Endophilin_B2 The 53.4 2E+02 0.0044 31.9 12.7 29 1088-1116 159-187 (220)
240 KOG1532 GTPase XAB1, interacts 53.4 63 0.0014 37.0 8.8 46 1128-1173 251-296 (366)
241 COG0497 RecN ATPase involved i 53.4 1.5E+02 0.0033 37.3 12.9 31 1085-1115 299-329 (557)
242 cd01530 Cdc25 Cdc25 phosphatas 53.4 48 0.001 32.9 7.4 27 116-144 65-91 (121)
243 PF12210 Hrs_helical: Hepatocy 52.8 1.1E+02 0.0024 29.4 9.1 50 1096-1148 35-84 (96)
244 cd07664 BAR_SNX2 The Bin/Amphi 52.8 1.6E+02 0.0035 33.0 12.1 22 1046-1067 27-48 (234)
245 PF04179 Init_tRNA_PT: Initiat 52.5 19 0.00042 43.9 5.2 79 60-144 320-401 (451)
246 COG3883 Uncharacterized protei 52.3 3.2E+02 0.007 31.3 14.2 22 1079-1100 83-104 (265)
247 cd07615 BAR_Endophilin_A3 The 52.1 1.6E+02 0.0035 32.8 11.7 42 1089-1135 156-197 (223)
248 COG4477 EzrA Negative regulato 52.1 1.7E+02 0.0036 36.4 12.6 24 1096-1119 353-376 (570)
249 PF09325 Vps5: Vps5 C terminal 52.0 2E+02 0.0043 31.6 12.8 16 1047-1062 30-45 (236)
250 KOG3433 Protein involved in me 51.9 39 0.00084 36.0 6.5 22 1044-1065 84-105 (203)
251 PF08317 Spc7: Spc7 kinetochor 51.7 3.6E+02 0.0079 31.6 15.5 10 1031-1040 69-78 (325)
252 PF03114 BAR: BAR domain; Int 51.7 3.3E+02 0.0071 29.1 15.1 17 1125-1141 119-135 (229)
253 cd07613 BAR_Endophilin_A1 The 51.7 1.4E+02 0.0031 33.2 11.3 29 1088-1116 155-183 (223)
254 PF13851 GAS: Growth-arrest sp 51.5 3.5E+02 0.0077 29.6 14.2 10 996-1005 12-21 (201)
255 PF01591 6PF2K: 6-phosphofruct 51.4 9.9 0.00021 42.1 2.3 90 23-128 14-105 (222)
256 PF08317 Spc7: Spc7 kinetochor 51.3 2.3E+02 0.0051 33.2 13.8 12 955-966 59-71 (325)
257 KOG3080 Nucleolar protein-like 51.3 1.1E+02 0.0025 35.0 10.4 41 1075-1116 135-175 (328)
258 KOG0963 Transcription factor/C 51.0 1.8E+02 0.0038 36.8 12.8 46 1075-1120 58-103 (629)
259 cd07663 BAR_SNX5 The Bin/Amphi 50.9 1.9E+02 0.004 32.2 11.9 43 1072-1114 19-61 (218)
260 PF14643 DUF4455: Domain of un 50.9 5.5E+02 0.012 31.9 17.5 26 1076-1101 309-334 (473)
261 PF09903 DUF2130: Uncharacteri 50.7 1.8E+02 0.0038 33.4 12.2 68 1075-1151 155-222 (267)
262 PRK15374 pathogenicity island 50.4 1.9E+02 0.0041 36.0 12.7 44 962-1005 101-146 (593)
263 PF05667 DUF812: Protein of un 50.4 1.3E+02 0.0029 38.2 12.2 14 987-1000 248-261 (594)
264 KOG4603 TBP-1 interacting prot 50.3 3.4E+02 0.0074 28.9 13.0 39 1076-1114 79-117 (201)
265 PF07439 DUF1515: Protein of u 50.3 82 0.0018 30.9 7.9 56 1046-1104 6-61 (112)
266 cd00179 SynN Syntaxin N-termin 50.2 2.8E+02 0.0061 28.2 12.7 24 1045-1068 3-26 (151)
267 cd09236 V_AnPalA_UmRIM20_like 49.9 2.1E+02 0.0047 33.9 13.3 23 1042-1064 196-218 (353)
268 KOG0239 Kinesin (KAR3 subfamil 49.8 4.1E+02 0.0088 34.5 16.4 7 1034-1040 169-175 (670)
269 PF04108 APG17: Autophagy prot 49.7 1.2E+02 0.0025 37.0 11.3 19 1127-1145 335-353 (412)
270 PF09731 Mitofilin: Mitochondr 49.6 1.4E+02 0.0029 37.9 12.4 12 1043-1054 260-271 (582)
271 cd07642 BAR_ASAP2 The Bin/Amph 49.5 2E+02 0.0044 31.8 11.8 12 1121-1132 93-105 (215)
272 cd07633 BAR_OPHN1 The Bin/Amph 49.5 3.3E+02 0.0071 30.0 13.2 22 1125-1146 94-115 (207)
273 KOG0288 WD40 repeat protein Ti 49.4 2.2E+02 0.0047 34.3 12.6 26 1079-1104 44-69 (459)
274 cd09237 V_ScBro1_like Protein- 49.4 3.5E+02 0.0076 32.1 15.0 24 1042-1065 202-225 (356)
275 cd07616 BAR_Endophilin_B1 The 49.4 3.1E+02 0.0068 30.7 13.5 49 1087-1140 167-215 (229)
276 TIGR01834 PHA_synth_III_E poly 49.2 3.1E+02 0.0067 32.2 13.9 17 1054-1070 207-223 (320)
277 KOG0964 Structural maintenance 49.1 2.1E+02 0.0046 37.9 13.3 20 1120-1139 949-968 (1200)
278 PF05957 DUF883: Bacterial pro 49.1 72 0.0016 30.3 7.5 71 1045-1117 2-73 (94)
279 PRK04863 mukB cell division pr 48.8 2.6E+02 0.0057 39.6 15.5 27 1078-1104 309-335 (1486)
280 CHL00019 atpF ATP synthase CF0 48.7 3.7E+02 0.008 28.8 17.2 7 1034-1040 31-37 (184)
281 PF04344 CheZ: Chemotaxis phos 48.5 92 0.002 34.4 9.2 26 1085-1110 99-124 (214)
282 KOG0949 Predicted helicase, DE 48.4 95 0.0021 41.1 10.3 13 45-57 59-71 (1330)
283 cd07595 BAR_RhoGAP_Rich-like T 48.4 3.4E+02 0.0073 30.7 13.8 45 1086-1135 161-205 (244)
284 cd01443 Cdc25_Acr2p Cdc25 enzy 48.2 42 0.00092 32.5 6.0 33 100-132 47-79 (113)
285 cd07665 BAR_SNX1 The Bin/Amphi 48.0 4.5E+02 0.0096 29.6 14.5 25 1044-1068 25-49 (234)
286 COG1283 NptA Na+/phosphate sym 47.9 3.4E+02 0.0074 34.1 14.8 18 1048-1065 366-383 (533)
287 cd07634 BAR_GAP10-like The Bin 47.9 2.4E+02 0.0052 31.1 12.1 15 1131-1145 111-125 (207)
288 PF11214 Med2: Mediator comple 47.9 1.9E+02 0.0041 28.4 9.9 14 1125-1138 57-70 (105)
289 KOG1103 Predicted coiled-coil 47.8 3.6E+02 0.0079 31.6 13.7 23 1129-1151 243-265 (561)
290 PF03904 DUF334: Domain of unk 47.8 4.2E+02 0.0091 29.6 13.7 14 1049-1062 44-57 (230)
291 PF15086 UPF0542: Uncharacteri 47.7 1.5E+02 0.0032 27.2 8.5 14 1105-1118 7-20 (74)
292 KOG0977 Nuclear envelope prote 47.6 1.5E+02 0.0032 37.3 11.5 27 1041-1067 113-139 (546)
293 cd07601 BAR_APPL The Bin/Amphi 47.5 2.4E+02 0.0053 31.2 12.2 42 1044-1085 5-50 (215)
294 PRK01415 hypothetical protein; 47.2 35 0.00076 38.5 5.8 51 94-147 146-196 (247)
295 KOG2391 Vacuolar sorting prote 47.2 1E+02 0.0022 36.0 9.4 14 1104-1117 300-313 (365)
296 KOG0933 Structural maintenance 47.1 2.3E+02 0.005 37.7 13.3 10 101-110 125-134 (1174)
297 PRK00409 recombination and DNA 47.0 5.7E+02 0.012 33.9 17.6 30 1080-1109 538-567 (782)
298 COG4499 Predicted membrane pro 46.9 80 0.0017 37.5 8.6 11 987-997 278-288 (434)
299 KOG3215 Uncharacterized conser 46.8 4.3E+02 0.0093 29.0 13.9 47 1075-1121 95-147 (222)
300 PF13949 ALIX_LYPXL_bnd: ALIX 46.7 1.2E+02 0.0027 34.6 10.4 28 1123-1150 268-295 (296)
301 KOG0971 Microtubule-associated 46.7 1.5E+02 0.0033 38.7 11.5 39 1079-1121 328-366 (1243)
302 KOG2643 Ca2+ binding protein, 46.5 2E+02 0.0043 35.0 11.8 47 950-997 218-264 (489)
303 COG5104 PRP40 Splicing factor 46.2 1.6E+02 0.0034 35.6 10.8 17 1121-1137 409-425 (590)
304 PRK04863 mukB cell division pr 46.1 3.5E+02 0.0076 38.4 16.0 31 1111-1143 428-458 (1486)
305 COG4985 ABC-type phosphate tra 46.0 2.4E+02 0.0052 31.4 11.4 78 1031-1108 159-246 (289)
306 PF05529 Bap31: B-cell recepto 46.0 1.2E+02 0.0026 32.6 9.6 79 1033-1111 110-189 (192)
307 PF09537 DUF2383: Domain of un 46.0 60 0.0013 31.5 6.7 72 1051-1140 11-82 (111)
308 cd07621 BAR_SNX5_6 The Bin/Amp 46.0 3.9E+02 0.0084 29.8 13.5 38 1073-1110 21-58 (219)
309 PF10267 Tmemb_cc2: Predicted 45.5 1.4E+02 0.0031 36.0 10.8 25 1043-1067 214-238 (395)
310 PF10354 DUF2431: Domain of un 45.4 61 0.0013 34.3 7.0 100 20-128 21-128 (166)
311 TIGR03060 PS_II_psb29 photosys 45.4 2.5E+02 0.0055 31.1 11.7 52 988-1040 26-82 (214)
312 KOG4722 Zn-finger protein [Gen 45.4 1.4E+02 0.0029 35.7 10.1 16 999-1014 209-224 (672)
313 PF05701 WEMBL: Weak chloropla 45.3 2.6E+02 0.0056 35.2 13.6 60 1079-1140 326-385 (522)
314 KOG2196 Nuclear porin [Nuclear 45.3 2.3E+02 0.005 31.8 11.4 30 1086-1115 174-203 (254)
315 KOG2264 Exostosin EXT1L [Signa 45.2 1.1E+02 0.0023 37.9 9.5 60 1046-1112 91-150 (907)
316 cd00176 SPEC Spectrin repeats, 45.2 3.8E+02 0.0082 27.9 14.5 22 1045-1066 4-25 (213)
317 TIGR02231 conserved hypothetic 45.0 2.8E+02 0.0061 34.7 14.0 18 1049-1066 72-89 (525)
318 PRK10476 multidrug resistance 44.9 3.2E+02 0.0069 32.1 13.7 31 1085-1115 116-146 (346)
319 cd07665 BAR_SNX1 The Bin/Amphi 44.4 1.9E+02 0.0041 32.5 11.0 56 1083-1142 166-221 (234)
320 cd07633 BAR_OPHN1 The Bin/Amph 44.4 4.6E+02 0.01 28.9 13.4 17 1048-1064 9-25 (207)
321 PF15112 DUF4559: Domain of un 44.3 1.1E+02 0.0023 35.6 9.0 57 1048-1104 229-285 (307)
322 PF11887 DUF3407: Protein of u 44.3 98 0.0021 35.3 9.0 30 1087-1116 88-117 (267)
323 PRK04654 sec-independent trans 44.2 1.4E+02 0.003 32.9 9.4 43 1075-1117 57-99 (214)
324 PF04740 LXG: LXG domain of WX 44.2 4.4E+02 0.0094 28.4 14.8 61 1049-1109 69-132 (204)
325 cd07621 BAR_SNX5_6 The Bin/Amp 44.1 2.7E+02 0.0058 31.0 11.9 9 1106-1114 108-116 (219)
326 KOG3758 Uncharacterized conser 44.1 4.6E+02 0.0099 33.3 14.7 22 1046-1067 83-104 (655)
327 PF06160 EzrA: Septation ring 43.9 5.6E+02 0.012 32.5 16.3 38 1079-1116 125-162 (560)
328 smart00721 BAR BAR domain. 43.8 3.8E+02 0.0083 29.2 13.5 27 1042-1068 28-54 (239)
329 cd09235 V_Alix Middle V-domain 43.7 4E+02 0.0086 31.5 14.2 99 1042-1140 192-308 (339)
330 KOG0250 DNA repair protein RAD 43.7 2.7E+02 0.0059 37.5 13.5 8 955-962 202-209 (1074)
331 TIGR03017 EpsF chain length de 43.4 3.7E+02 0.008 32.6 14.4 28 1092-1119 256-283 (444)
332 PF11932 DUF3450: Protein of u 43.4 2.6E+02 0.0056 31.5 12.1 59 1044-1109 45-103 (251)
333 smart00787 Spc7 Spc7 kinetocho 43.2 3.5E+02 0.0076 31.7 13.3 12 955-966 54-66 (312)
334 PF09730 BicD: Microtubule-ass 43.1 1.5E+02 0.0032 38.5 11.0 66 1043-1115 36-101 (717)
335 PF15358 TSKS: Testis-specific 43.1 1E+02 0.0023 36.6 8.8 13 947-959 36-48 (558)
336 PF06705 SF-assemblin: SF-asse 43.0 4.9E+02 0.011 29.2 14.2 10 1128-1137 129-138 (247)
337 PF02050 FliJ: Flagellar FliJ 43.0 3E+02 0.0065 26.1 15.4 32 1076-1107 45-76 (123)
338 PF13166 AAA_13: AAA domain 43.0 4.9E+02 0.011 33.7 16.2 8 1091-1098 330-337 (712)
339 KOG0999 Microtubule-associated 42.9 7.8E+02 0.017 30.9 17.3 59 1046-1104 112-177 (772)
340 KOG0796 Spliceosome subunit [R 42.9 1.9E+02 0.0041 33.7 10.7 28 1047-1074 121-148 (319)
341 KOG0980 Actin-binding protein 42.8 3.7E+02 0.008 35.4 14.0 66 51-132 22-87 (980)
342 COG1579 Zn-ribbon protein, pos 42.8 5.4E+02 0.012 29.1 15.9 37 1076-1112 89-125 (239)
343 KOG0963 Transcription factor/C 42.6 2.7E+02 0.0059 35.2 12.6 41 1079-1119 192-232 (629)
344 PF05983 Med7: MED7 protein; 42.6 1.4E+02 0.0031 31.5 9.2 31 1089-1119 71-101 (162)
345 PF10481 CENP-F_N: Cenp-F N-te 42.5 1.9E+02 0.0041 32.9 10.3 63 1045-1114 71-133 (307)
346 PF15015 NYD-SP12_N: Spermatog 42.4 7.3E+02 0.016 30.4 15.9 84 1045-1145 464-550 (569)
347 TIGR00998 8a0101 efflux pump m 42.4 2.6E+02 0.0056 32.4 12.4 32 1084-1115 109-140 (334)
348 PF01544 CorA: CorA-like Mg2+ 42.2 5.4E+02 0.012 28.8 16.4 74 1029-1111 106-179 (292)
349 PF10458 Val_tRNA-synt_C: Valy 42.2 70 0.0015 28.5 5.8 62 1045-1107 1-63 (66)
350 PF04880 NUDE_C: NUDE protein, 42.2 34 0.00073 36.3 4.4 21 1129-1149 2-22 (166)
351 PF13514 AAA_27: AAA domain 41.9 6E+02 0.013 35.1 17.4 57 1086-1142 746-802 (1111)
352 PRK14155 heat shock protein Gr 41.8 2.2E+02 0.0047 31.5 10.7 8 1049-1056 28-35 (208)
353 TIGR03545 conserved hypothetic 41.5 1.5E+02 0.0033 37.4 10.7 41 1079-1119 233-277 (555)
354 cd01533 4RHOD_Repeat_2 Member 41.5 54 0.0012 31.5 5.5 79 42-146 12-90 (109)
355 PF09766 FimP: Fms-interacting 41.4 2.2E+02 0.0048 33.9 11.6 47 1086-1132 29-77 (355)
356 PF14712 Snapin_Pallidin: Snap 41.3 2.4E+02 0.0051 26.5 9.7 41 1075-1115 6-46 (92)
357 PRK14086 dnaA chromosomal repl 41.1 86 0.0019 40.0 8.4 16 1047-1062 479-494 (617)
358 KOG3518 Putative guanine nucle 40.9 6.6E+02 0.014 29.5 15.6 86 1047-1142 137-223 (521)
359 PF12889 DUF3829: Protein of u 40.7 4.3E+02 0.0092 29.7 13.5 21 986-1006 83-103 (276)
360 KOG0804 Cytoplasmic Zn-finger 40.7 1.4E+02 0.0031 36.1 9.5 21 6-26 20-40 (493)
361 PRK14900 valS valyl-tRNA synth 40.5 52 0.0011 44.7 7.0 65 1046-1111 840-905 (1052)
362 PF02403 Seryl_tRNA_N: Seryl-t 40.5 2.6E+02 0.0057 27.0 10.1 77 1032-1112 25-103 (108)
363 PF08359 TetR_C_4: YsiA-like p 40.4 1.1E+02 0.0024 30.3 7.8 23 1123-1145 56-78 (133)
364 cd07637 BAR_ACAP3 The Bin/Amph 40.3 5.3E+02 0.012 28.2 14.3 70 1075-1144 86-157 (200)
365 PTZ00440 reticulocyte binding 40.3 3.4E+02 0.0075 40.3 14.6 61 1048-1110 1612-1672(2722)
366 PF01540 Lipoprotein_7: Adhesi 40.2 3E+02 0.0065 31.2 11.3 40 988-1027 169-209 (353)
367 PF02181 FH2: Formin Homology 40.2 1.9E+02 0.0041 34.3 11.0 58 1091-1148 275-333 (370)
368 KOG0980 Actin-binding protein 40.1 1.8E+02 0.0039 38.1 10.8 14 332-345 146-159 (980)
369 cd08620 PI-PLCXDc_like_1 Catal 40.1 22 0.00049 40.8 3.0 28 101-128 77-104 (281)
370 cd07626 BAR_SNX9_like The Bin/ 39.9 1.8E+02 0.0038 31.9 9.6 27 1093-1119 65-91 (199)
371 PF00804 Syntaxin: Syntaxin; 39.7 3.2E+02 0.0069 25.4 12.2 32 1076-1107 42-73 (103)
372 PF10234 Cluap1: Clusterin-ass 39.6 5.3E+02 0.012 29.6 13.6 25 1091-1115 118-142 (267)
373 COG3352 FlaC Putative archaeal 39.5 1E+02 0.0022 32.1 7.0 65 1043-1107 74-139 (157)
374 TIGR03185 DNA_S_dndD DNA sulfu 39.4 6.6E+02 0.014 32.4 16.4 26 118-144 27-53 (650)
375 cd07594 BAR_Endophilin_B The B 39.3 3.9E+02 0.0084 30.0 12.4 29 1087-1115 167-195 (229)
376 KOG4460 Nuclear pore complex, 39.3 2E+02 0.0044 35.6 10.6 16 42-57 19-34 (741)
377 KOG2129 Uncharacterized conser 39.3 4.1E+02 0.0089 32.0 12.7 29 1078-1106 248-276 (552)
378 PF07431 DUF1512: Protein of u 39.3 1.2E+02 0.0026 35.9 8.6 70 1078-1147 35-106 (355)
379 COG2882 FliJ Flagellar biosynt 39.3 4.3E+02 0.0093 27.7 11.7 18 1086-1103 33-50 (148)
380 cd08915 V_Alix_like Protein-in 39.2 4E+02 0.0087 31.4 13.4 67 1075-1141 243-312 (342)
381 PF03194 LUC7: LUC7 N_terminus 39.0 1.6E+02 0.0034 33.5 9.4 27 1047-1073 122-148 (254)
382 TIGR01069 mutS2 MutS2 family p 39.0 3.3E+02 0.0071 36.0 13.6 31 1080-1110 533-563 (771)
383 KOG0810 SNARE protein Syntaxin 38.9 5.3E+02 0.012 30.1 13.7 17 1048-1064 40-56 (297)
384 KOG2357 Uncharacterized conser 38.9 2.4E+02 0.0052 34.0 11.0 32 1122-1153 376-407 (440)
385 smart00721 BAR BAR domain. 38.7 3.7E+02 0.008 29.3 12.3 31 1085-1115 172-202 (239)
386 PF06103 DUF948: Bacterial pro 38.7 2.9E+02 0.0062 25.9 9.8 23 1043-1065 21-43 (90)
387 cd01523 RHOD_Lact_B Member of 38.7 1.1E+02 0.0023 28.8 7.0 27 117-146 59-85 (100)
388 TIGR02764 spore_ybaN_pdaB poly 38.6 1.5E+02 0.0032 31.6 8.9 85 36-126 75-159 (191)
389 KOG0962 DNA repair protein RAD 38.6 6E+02 0.013 35.2 15.7 239 918-1174 53-355 (1294)
390 PF15254 CCDC14: Coiled-coil d 38.5 3.6E+02 0.0078 35.1 12.9 27 1043-1069 389-415 (861)
391 COG1196 Smc Chromosome segrega 38.5 3.1E+02 0.0068 37.9 14.0 29 1080-1108 257-285 (1163)
392 TIGR01612 235kDa-fam reticuloc 38.5 6.3E+02 0.014 37.3 16.1 75 1033-1109 1654-1733(2757)
393 PF08336 P4Ha_N: Prolyl 4-Hydr 38.4 3.3E+02 0.0071 27.6 10.9 65 1075-1145 14-82 (134)
394 PF00015 MCPsignal: Methyl-acc 38.2 5.2E+02 0.011 27.5 13.6 14 986-999 40-53 (213)
395 KOG2751 Beclin-like protein [S 38.2 7.6E+02 0.017 30.1 14.9 29 1104-1132 160-188 (447)
396 PF05659 RPW8: Arabidopsis bro 38.1 4.4E+02 0.0095 27.5 11.8 26 1043-1068 32-57 (147)
397 PF15079 DUF4546: Domain of un 38.0 1.1E+02 0.0025 32.0 7.2 32 1076-1107 51-82 (205)
398 cd01525 RHOD_Kc Member of the 37.9 74 0.0016 30.0 5.8 32 112-146 58-89 (105)
399 KOG0742 AAA+-type ATPase [Post 37.8 6.6E+02 0.014 30.7 14.2 16 1006-1021 65-80 (630)
400 KOG3215 Uncharacterized conser 37.8 5E+02 0.011 28.5 12.1 40 1073-1112 30-69 (222)
401 TIGR01069 mutS2 MutS2 family p 37.7 4.2E+02 0.0091 35.0 14.3 20 1081-1100 541-560 (771)
402 PF09726 Macoilin: Transmembra 37.6 4.4E+02 0.0095 34.4 14.1 17 1128-1144 546-562 (697)
403 PF01411 tRNA-synt_2c: tRNA sy 37.6 1.2E+02 0.0025 38.5 8.9 19 987-1005 300-318 (552)
404 TIGR02284 conserved hypothetic 37.5 4.7E+02 0.01 26.8 13.2 51 1076-1139 30-80 (139)
405 KOG3915 Transcription regulato 37.5 1.1E+02 0.0025 36.8 8.0 8 955-962 239-246 (641)
406 KOG2196 Nuclear porin [Nuclear 37.5 6.5E+02 0.014 28.4 14.4 96 1042-1140 135-232 (254)
407 PF02074 Peptidase_M32: Carbox 37.4 34 0.00074 42.4 4.2 38 1104-1141 152-189 (494)
408 TIGR00606 rad50 rad50. This fa 37.4 2.8E+02 0.0062 38.9 13.4 27 1122-1148 392-418 (1311)
409 PF09727 CortBP2: Cortactin-bi 37.4 3.1E+02 0.0067 29.9 10.7 73 1079-1153 84-156 (192)
410 KOG0132 RNA polymerase II C-te 37.3 1.1E+03 0.024 31.0 16.9 16 38-53 38-53 (894)
411 KOG0977 Nuclear envelope prote 37.1 5.3E+02 0.012 32.5 14.1 40 1104-1143 222-265 (546)
412 PF07106 TBPIP: Tat binding pr 37.1 5.2E+02 0.011 27.2 13.0 56 1078-1140 74-129 (169)
413 PF02841 GBP_C: Guanylate-bind 37.1 7.1E+02 0.015 28.7 16.7 17 990-1006 9-25 (297)
414 cd08682 C2_Rab11-FIP_classI C2 36.7 2E+02 0.0043 28.4 8.9 80 181-275 9-94 (126)
415 KOG4360 Uncharacterized coiled 36.7 1.2E+02 0.0025 37.4 8.1 38 1078-1115 256-293 (596)
416 PF04912 Dynamitin: Dynamitin 36.5 5.2E+02 0.011 31.1 14.0 17 1088-1104 317-333 (388)
417 PF06694 Plant_NMP1: Plant nuc 36.4 2.8E+02 0.0061 32.2 10.6 29 1042-1070 169-197 (325)
418 PF03127 GAT: GAT domain; Int 36.4 3.1E+02 0.0068 26.3 9.8 81 1045-1144 8-88 (100)
419 KOG4715 SWI/SNF-related matrix 36.4 81 0.0018 36.2 6.4 13 942-954 79-91 (410)
420 PF10805 DUF2730: Protein of u 36.3 1.9E+02 0.0041 28.4 8.3 66 1041-1111 35-100 (106)
421 PF11559 ADIP: Afadin- and alp 36.3 5E+02 0.011 26.7 16.7 29 1079-1107 76-104 (151)
422 KOG1922 Rho GTPase effector BN 36.3 1.8E+02 0.0038 38.7 10.8 70 1075-1144 666-738 (833)
423 PF05700 BCAS2: Breast carcino 36.3 6.2E+02 0.013 28.0 13.4 60 1078-1149 138-197 (221)
424 cd07668 BAR_SNX9 The Bin/Amphi 36.2 1.8E+02 0.0038 32.1 8.7 36 1094-1130 74-109 (210)
425 KOG0155 Transcription factor C 36.2 2.1E+02 0.0045 35.4 10.0 9 1032-1040 327-335 (617)
426 TIGR01884 cas_HTH CRISPR locus 36.2 1.4E+02 0.003 32.5 8.2 42 104-146 72-115 (203)
427 PF08514 STAG: STAG domain ; 36.1 2.2E+02 0.0048 28.5 8.9 36 1075-1113 16-51 (118)
428 KOG0982 Centrosomal protein Nu 35.9 8.9E+02 0.019 29.5 16.0 30 1079-1108 335-364 (502)
429 cd07600 BAR_Gvp36 The Bin/Amph 35.8 2.8E+02 0.0061 31.3 10.7 147 989-1149 81-237 (242)
430 COG1382 GimC Prefoldin, chaper 35.8 3.3E+02 0.0071 27.5 9.8 31 1078-1108 72-102 (119)
431 COG0075 Serine-pyruvate aminot 35.7 51 0.0011 39.6 5.1 60 62-128 83-142 (383)
432 KOG1240 Protein kinase contain 35.7 1.1E+02 0.0024 41.2 8.3 57 1075-1134 566-627 (1431)
433 COG1283 NptA Na+/phosphate sym 35.6 2.6E+02 0.0057 35.1 11.2 13 1122-1134 444-456 (533)
434 PF05600 DUF773: Protein of un 35.6 3.5E+02 0.0076 33.9 12.5 36 1085-1120 140-175 (507)
435 PF05701 WEMBL: Weak chloropla 35.5 4.8E+02 0.011 32.8 13.9 16 1081-1096 342-357 (522)
436 KOG4360 Uncharacterized coiled 35.5 7.7E+02 0.017 30.7 14.5 22 987-1008 105-126 (596)
437 KOG2129 Uncharacterized conser 35.4 7.8E+02 0.017 29.8 14.2 19 1081-1099 206-224 (552)
438 cd07618 BAR_Rich1 The Bin/Amph 35.4 5.1E+02 0.011 29.4 12.5 24 988-1011 59-82 (246)
439 KOG3691 Exocyst complex subuni 35.4 7.3E+02 0.016 32.9 15.0 40 1001-1040 18-57 (982)
440 PF14362 DUF4407: Domain of un 35.4 7.4E+02 0.016 28.5 16.8 31 1085-1115 137-172 (301)
441 cd07670 BAR_SNX18 The Bin/Amph 35.4 1.8E+02 0.0038 32.0 8.5 26 1094-1119 74-99 (207)
442 PRK00409 recombination and DNA 35.3 4.8E+02 0.01 34.6 14.2 11 14-24 9-19 (782)
443 PF05010 TACC: Transforming ac 35.3 6.5E+02 0.014 27.8 14.7 24 1085-1108 78-101 (207)
444 cd04042 C2A_MCTP_PRT C2 domain 35.3 2.3E+02 0.005 27.6 9.0 80 181-275 10-90 (121)
445 PF05667 DUF812: Protein of un 35.2 1.1E+03 0.023 30.3 17.7 66 1085-1150 449-514 (594)
446 cd09238 V_Alix_like_1 Protein- 35.2 3.9E+02 0.0085 31.5 12.4 24 1042-1065 196-219 (339)
447 PF05478 Prominin: Prominin; 35.0 1.3E+02 0.0028 39.8 9.2 78 1033-1110 610-694 (806)
448 PF05266 DUF724: Protein of un 35.0 1.2E+02 0.0026 33.0 7.3 26 1085-1110 161-186 (190)
449 KOG1937 Uncharacterized conser 35.0 9.4E+02 0.02 29.5 16.6 66 1085-1150 347-412 (521)
450 cd01448 TST_Repeat_1 Thiosulfa 35.0 68 0.0015 31.3 5.2 29 116-146 76-104 (122)
451 PF05055 DUF677: Protein of un 34.9 8.4E+02 0.018 29.0 14.9 13 1132-1144 144-156 (336)
452 PRK05320 rhodanese superfamily 34.9 60 0.0013 36.8 5.4 50 94-146 150-199 (257)
453 PF13758 Prefoldin_3: Prefoldi 34.9 2.9E+02 0.0064 26.9 9.0 48 1106-1153 49-97 (99)
454 PF09805 Nop25: Nucleolar prot 34.9 55 0.0012 33.6 4.6 22 1128-1149 19-40 (137)
455 PRK10328 DNA binding protein, 34.8 2.8E+02 0.0061 28.5 9.5 15 1129-1143 26-40 (134)
456 PF10552 ORF6C: ORF6C domain; 34.8 4E+02 0.0086 26.4 10.5 28 1046-1073 6-33 (116)
457 PRK14900 valS valyl-tRNA synth 34.8 89 0.0019 42.6 7.7 63 1042-1104 843-905 (1052)
458 PHA03332 membrane glycoprotein 34.8 4E+02 0.0087 35.8 12.7 73 1043-1118 893-969 (1328)
459 PF06632 XRCC4: DNA double-str 34.8 4.2E+02 0.0092 31.5 12.3 7 1010-1016 82-88 (342)
460 PRK03918 chromosome segregatio 34.7 4.6E+02 0.0099 34.9 14.4 23 121-144 25-48 (880)
461 KOG3859 Septins (P-loop GTPase 34.7 6.8E+02 0.015 29.0 13.1 26 1128-1153 363-388 (406)
462 PRK01584 alanyl-tRNA synthetas 34.5 4.1E+02 0.0089 34.0 12.8 19 986-1004 305-323 (594)
463 KOG2856 Adaptor protein PACSIN 34.4 5.1E+02 0.011 30.9 12.3 31 1073-1103 174-204 (472)
464 KOG2077 JNK/SAPK-associated pr 34.3 8.8E+02 0.019 30.6 14.7 37 1079-1121 353-389 (832)
465 TIGR00634 recN DNA repair prot 34.3 6E+02 0.013 32.2 14.6 23 1045-1067 270-292 (563)
466 cd01522 RHOD_1 Member of the R 34.2 1.3E+02 0.0028 29.5 7.0 27 117-146 62-88 (117)
467 PF12325 TMF_TATA_bd: TATA ele 34.2 2E+02 0.0043 29.0 8.2 31 1080-1110 86-116 (120)
468 PF07464 ApoLp-III: Apolipopho 34.2 5.4E+02 0.012 27.2 11.7 18 1099-1116 101-118 (155)
469 TIGR02613 mob_myst_B mobile my 34.1 57 0.0012 35.1 4.8 47 101-148 88-146 (186)
470 PF05335 DUF745: Protein of un 33.9 6.5E+02 0.014 27.4 14.5 27 1042-1068 68-94 (188)
471 PF09403 FadA: Adhesion protei 33.9 5.3E+02 0.011 26.3 12.9 57 1045-1111 24-80 (126)
472 KOG0388 SNF2 family DNA-depend 33.9 3E+02 0.0065 35.5 11.1 30 998-1027 243-272 (1185)
473 PLN03237 DNA topoisomerase 2; 33.9 7.2E+02 0.016 35.2 15.6 46 1089-1141 1125-1170(1465)
474 PF15066 CAGE1: Cancer-associa 33.7 5.4E+02 0.012 31.6 12.8 36 1078-1113 448-483 (527)
475 cd07605 I-BAR_IMD Inverse (I)- 33.7 7.2E+02 0.016 27.8 13.8 130 1035-1168 3-145 (223)
476 KOG1150 Predicted molecular ch 33.6 4.3E+02 0.0093 29.0 10.8 127 1048-1181 88-216 (250)
477 PLN02372 violaxanthin de-epoxi 33.6 3.8E+02 0.0081 32.4 11.4 25 982-1006 160-184 (455)
478 KOG0260 RNA polymerase II, lar 33.5 1.5E+03 0.032 31.4 18.1 14 296-309 1255-1268(1605)
479 PF05384 DegS: Sensor protein 33.5 6.1E+02 0.013 26.9 12.1 29 1086-1114 44-72 (159)
480 PRK04778 septation ring format 33.4 9E+02 0.019 30.7 15.9 38 1079-1116 129-166 (569)
481 cd01528 RHOD_2 Member of the R 33.4 78 0.0017 29.9 5.1 79 44-146 4-82 (101)
482 KOG4451 Uncharacterized conser 33.4 6E+02 0.013 28.3 12.0 10 1019-1028 15-24 (286)
483 KOG2528 Sorting nexin SNX9/SH3 33.3 1.8E+02 0.0039 35.3 8.8 201 959-1170 239-475 (490)
484 KOG0946 ER-Golgi vesicle-tethe 33.3 5.9E+02 0.013 33.4 13.6 185 986-1171 569-775 (970)
485 PF14932 HAUS-augmin3: HAUS au 33.2 6.7E+02 0.014 28.4 13.3 110 1034-1143 11-192 (256)
486 PF05890 Ebp2: Eukaryotic rRNA 33.0 87 0.0019 35.9 6.2 91 1083-1176 80-171 (271)
487 cd07645 I-BAR_IMD_BAIAP2L1 Inv 33.0 5.8E+02 0.013 28.4 12.0 114 1041-1154 71-187 (226)
488 KOG2008 BTK-associated SH3-dom 33.0 8.5E+02 0.018 28.4 15.9 155 1019-1177 19-177 (426)
489 TIGR03185 DNA_S_dndD DNA sulfu 33.0 2.5E+02 0.0054 36.2 11.1 110 1042-1151 399-510 (650)
490 PF09731 Mitofilin: Mitochondr 33.0 1.7E+02 0.0037 37.0 9.5 141 1042-1183 214-355 (582)
491 cd07640 BAR_ASAP3 The Bin/Amph 32.9 3E+02 0.0065 30.2 9.7 134 1043-1176 4-161 (213)
492 cd07666 BAR_SNX7 The Bin/Amphi 32.8 5.5E+02 0.012 29.0 12.3 132 1034-1175 59-194 (243)
493 PF07888 CALCOCO1: Calcium bin 32.8 5.9E+02 0.013 32.1 13.5 130 1041-1176 171-305 (546)
494 PRK01156 chromosome segregatio 32.8 5.4E+02 0.012 34.5 14.6 208 955-1176 116-354 (895)
495 PF06637 PV-1: PV-1 protein (P 32.7 5.5E+02 0.012 30.8 12.3 145 1033-1180 33-194 (442)
496 PRK14858 tatA twin arginine tr 32.7 1.8E+02 0.0039 28.8 7.3 59 1109-1171 16-74 (108)
497 PRK03598 putative efflux pump 32.7 8.1E+02 0.017 28.5 14.5 134 1041-1183 74-214 (331)
498 PF05911 DUF869: Plant protein 32.6 1.8E+02 0.004 38.1 9.6 209 965-1178 529-749 (769)
499 PF10186 Atg14: UV radiation r 32.6 7.7E+02 0.017 27.8 14.8 123 1043-1178 22-149 (302)
500 COG4372 Uncharacterized protei 32.6 9.6E+02 0.021 28.9 15.0 128 1039-1175 100-227 (499)
No 1
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3.2e-49 Score=459.47 Aligned_cols=274 Identities=20% Similarity=0.347 Sum_probs=220.4
Q ss_pred hhhhhccCCCCCceeeeCcEEEecCCCCCCcchhHHhhccHHHHHHHHhhhCCCCcEEEEEeccCCcCcccccccccCCc
Q 001026 4 FRKFFYRKPPDGLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDM 83 (1184)
Q Consensus 4 ~rr~~~~~~~lDLtyIT~RIiams~gfPa~~~~e~~YRN~i~dV~~fL~~~H~~~~y~V~Nl~ee~~~~~~~~~~~~f~~ 83 (1184)
-||+.+++.||||+|||+|||||+ ||++++ |+.|||+|+||++||+++|++| |+|||||.|+.|+ .++|++
T Consensus 3 k~r~~~~~~DLDltYIT~rIIams--fPa~~~-es~yRN~l~dV~~fL~s~H~~~-y~vyNL~~er~yd-----~~~f~g 73 (434)
T KOG2283|consen 3 KRRYNEGGFDLDLTYITSRIIAMS--FPAEGI-ESLYRNNLEDVVLFLDSKHKDH-YKVYNLSSERLYD-----PSRFHG 73 (434)
T ss_pred cchhhhccccccceeeeeeEEEEe--CCCCcc-hhhhcCCHHHHHHHHhhccCCc-eEEEecCccccCC-----cccccc
Confidence 478889999999999999999995 999988 8899999999999999999995 9999999776665 589999
Q ss_pred eEEecCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHHHHHHHHhhCCCcHHHHHHHHh----
Q 001026 84 TVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIY---- 159 (1184)
Q Consensus 84 ~V~~~P~~~~~~p~p~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~~~~~~~~aL~~~~---- 159 (1184)
+|..| .|.+|++|+|++|+.||++|++||++|++||||||||+|||| ||+||||||+|++++.++++||++|.
T Consensus 74 ~V~~~--~~~Dh~~P~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgr-tg~~icA~L~~~~~~~ta~eald~~~~kR~ 150 (434)
T KOG2283|consen 74 RVARF--GFDDHNPPPLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGR-TGVMICAYLIYSGISATAEEALDYFNEKRF 150 (434)
T ss_pred ceeec--CCCCCCCCcHHHHHHHHHCHHHHHhcCccceEEEEccCCCcc-eEEEEeHHHHhhhhcCCHHHHHHHHhhhhc
Confidence 99999 456778899999999999999999999999999999999999 89999999999999999999999984
Q ss_pred ---------hhchhhhhcccCC-C-------CCC--CCCc-----cccCCc-CCCCCceeEEEEEecCCCcccCCCCcEE
Q 001026 160 ---------KQAPRELLQLMSP-L-------NPL--PSQL-----RVIPNF-DGEGGCCPIFRIYGQDPLMVADRTPKVL 214 (1184)
Q Consensus 160 ---------~pSq~ryl~yfs~-L-------n~~--Psql-----r~VP~f-~~~~gcrP~l~Iy~~~~~~~~~~~~~~l 214 (1184)
+|||+|||+||+. | +.. +..| ..|+.| ..+.||++++.||+. .+.+
T Consensus 151 ~~~~~~~~~~PSq~RYv~Y~~~~l~~~~~~~~~~~~~~f~~~~~~~~ip~~~~~~~~~~~~~~v~~~---------k~~~ 221 (434)
T KOG2283|consen 151 DEGKSKGVTIPSQRRYVGYFSRVLLNGPLPPRSNSCPLFLHSFILISIPNFNSSRDGCRPAFPVYQG---------KKKV 221 (434)
T ss_pred cccccCCccCchhhHHHHHHHHHhhcCCcCcccccCceEeeeeeeeecCcccccCCCCCccceeeec---------ceee
Confidence 4899999999998 3 111 3333 567874 346899999999987 4667
Q ss_pred EeCccCccceeeecccCccEEEEeccccccCCeEEEEEecCCcCccc-------eeEEEEEeecccccCC--EEEecccc
Q 001026 215 FSTPKRSKLVRHYKQADCELVKIDIHCHIQGDVVLECISLDSDQERE-------EMMFRVMFNTAFIRSN--ILMLNRDE 285 (1184)
Q Consensus 215 fss~~~~~~~~~~~~~d~~~i~i~~~~~v~GDV~i~~~h~~~~~~~~-------~~~Fr~~FnT~FI~~~--~L~l~k~e 285 (1184)
|+..... .++.|.. + +.|+|++++.++ ++|||.+.....+ ...|.++|||+|+... .+.+...+
T Consensus 222 ~~~~s~~-~~~~~~~-~-g~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (434)
T KOG2283|consen 222 YSFSSDG-IMRLGEL-D-GKIVIPLGLRVD----VKCYHKRTSSGNRGILKDKEFKGCQIQFYTGPFPEDETVVRFFQAD 294 (434)
T ss_pred EEeccCC-ccccccc-c-cceecccccccc----eEEEeeccccCCcceeeccccceEEEeccCCCccccceeeeccccc
Confidence 7766555 6677766 4 468999998888 9999987554333 3467777778777543 44555555
Q ss_pred ccccccCCCcCCcccceEEEE
Q 001026 286 IDILWNSKDLFSKEFRAEVLF 306 (1184)
Q Consensus 286 LD~~~~~~~~fp~dF~vel~F 306 (1184)
++.-.+ ...+..-|.+.+.-
T Consensus 295 ~~~~~~-~e~~~~~~~~~~~~ 314 (434)
T KOG2283|consen 295 LPIYVS-NEFVFNFFQVSLEV 314 (434)
T ss_pred CCcccc-ccccccccceeeec
Confidence 554432 34444455555433
No 2
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=3.8e-46 Score=433.18 Aligned_cols=228 Identities=25% Similarity=0.469 Sum_probs=201.8
Q ss_pred ccccccccccccceeeccccCCcchhH-----------------------------------------------HHHHhc
Q 001026 928 LAHIELRRANNCEIMLTKVKIPLPDLM-----------------------------------------------FFLELM 960 (1184)
Q Consensus 928 V~lLd~kRa~nl~I~L~klK~s~~ei~-----------------------------------------------Fll~L~ 960 (1184)
..|+|.|.+||++|+|++++++++||. |...|.
T Consensus 693 l~ilDsKtaQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye~l~e~EQF~vvm~ 772 (1102)
T KOG1924|consen 693 LRILDSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYEDLPEPEQFVVVMS 772 (1102)
T ss_pred heecchHHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCHHHHhHHHh
Confidence 578999999999999999999999997 999999
Q ss_pred CCCchhhhhhhhhhccchHHH-----------------HHcchhHHHHHHHHHHHhhhhcCCCCCcceeeeeccchhchh
Q 001026 961 KVPRVESKLRVFSFKIQFQTQ-----------------VRNSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLT 1023 (1184)
Q Consensus 961 ~IPrl~~RL~~l~fk~~F~~~-----------------L~~S~~L~~lL~~IL~iGN~LN~gt~rG~A~GFkL~SL~KL~ 1023 (1184)
+|.++.-||.+++||++|.+. ||+|++|.++|++||.+|||||+|++..+|+||.|++|.||.
T Consensus 773 ~vkrL~pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF~is~L~kL~ 852 (1102)
T KOG1924|consen 773 QVKRLRPRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGFNISFLCKLR 852 (1102)
T ss_pred hccccChhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchhhccchHHHHhhc
Confidence 999999999999999999997 999999999999999999999999999999999999999999
Q ss_pred cccccCCcchHHHHHHH-------------HHHHH-----------HHHHHHHHHHHHHHHHHHHhhhccCCccchhhHH
Q 001026 1024 DTRARNNKMTLMHYLCK-------------IQLKF-----------LAEEMQAISKGLEKVVQELTASENDGEVSGNFCK 1079 (1184)
Q Consensus 1024 dtKs~d~k~TLLhflvk-------------i~L~~-----------L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~ 1079 (1184)
|||+.|+|+||||||++ -+|++ +..-++.++..+.+++..+....-.+...|.|.+
T Consensus 853 dTKsaDqk~TLLHfLae~~e~kypd~l~F~ddl~hv~kaSrvnad~ikK~~~~m~~~ik~Le~dlk~~~~~~~e~dkF~e 932 (1102)
T KOG1924|consen 853 DTKSADQKTTLLHFLAEICEEKYPDILKFPDDLEHVEKASRVNADEIKKNLQQMENQIKKLERDLKNFKIAGNEHDKFVE 932 (1102)
T ss_pred cccccchhhHHHHHHHHHHHHhChhhhcchhhHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHH
Confidence 99999999999999999 12333 2233334444444555555444444456799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1080 LLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAE 1155 (1184)
Q Consensus 1080 ~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~ekkk~e 1155 (1184)
+|..|.++|.++++.|...+.+|++.|++|.+||.-|++++++|+||+.|.+|.+.|+.|+.||.+++++++|+++
T Consensus 933 kM~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kkysmEEFFaDi~tFrnaf~ea~~en~krRee~Ek~rr 1008 (1102)
T KOG1924|consen 933 KMTSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDPKKYSMEEFFADIRTFRNAFLEAVAENEKRREEEEKERR 1008 (1102)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988887765544
No 3
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=100.00 E-value=1.7e-37 Score=368.92 Aligned_cols=231 Identities=29% Similarity=0.542 Sum_probs=211.1
Q ss_pred ccccccccccccccceeeccccCCcchhH------------------------------------------------HHH
Q 001026 926 RGLAHIELRRANNCEIMLTKVKIPLPDLM------------------------------------------------FFL 957 (1184)
Q Consensus 926 r~V~lLd~kRa~nl~I~L~klK~s~~ei~------------------------------------------------Fll 957 (1184)
..+.|||.+|++|++|+|++++++.++|. ||+
T Consensus 72 ~~v~ild~krs~ni~I~L~~l~~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~L~~~Eqfl~ 151 (432)
T smart00498 72 QEFKILDPKRSQNLAILLRKLHMSYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEEDPEELARAEQFLL 151 (432)
T ss_pred cceEeechhHHhhHHHHHHhcCCCHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHHHHHHHHhcccchhhcchHHHHHH
Confidence 45899999999999999999999988885 999
Q ss_pred HhcCCCchhhhhhhhhhccchHHH-----------------HHcchhHHHHHHHHHHHhhhhcCCCCCcceeeeeccchh
Q 001026 958 ELMKVPRVESKLRVFSFKIQFQTQ-----------------VRNSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLL 1020 (1184)
Q Consensus 958 ~L~~IPrl~~RL~~l~fk~~F~~~-----------------L~~S~~L~~lL~~IL~iGN~LN~gt~rG~A~GFkL~SL~ 1020 (1184)
+|++||+++.||++|+|+.+|.+. |++|+.|+.||++||++|||||+|+.||+|+||+|++|.
T Consensus 152 ~l~~ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~ 231 (432)
T smart00498 152 LISNIPYLEERLNALLFKANFEEEVEDLKPQLEKVEAACEELRESKKFRKLLELILAIGNYMNSGSRRGQAYGFKLSSLL 231 (432)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCcccCCCcCCCcceeeHHHHH
Confidence 999999999999999999999987 999999999999999999999999999999999999999
Q ss_pred chhcccccCCcchHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchh
Q 001026 1021 KLTDTRARNNKMTLMHYLCK------------------------IQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGN 1076 (1184)
Q Consensus 1021 KL~dtKs~d~k~TLLhflvk------------------------i~L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~ 1076 (1184)
||.|||++|+++||||||++ ++ ..|..+++++.+++..++.++..........|.
T Consensus 232 KL~d~Ks~d~k~tLLhylv~~i~~~~p~~~~f~~el~~v~~askvs-~~l~~~~~~l~~~~~~~e~~~~~l~~~~~~~d~ 310 (432)
T smart00498 232 KLSDVKSADNKTTLLHFLVKIIRKKYPDLLDFYSDLHHLDKAKVNL-EQLEKDVKQLERQIKNLETDLGGLSDPENLDDK 310 (432)
T ss_pred HHHhhhccCCCccHHHHHHHHHHHhChhhccchhhhccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCccch
Confidence 99999999999999999999 23 556677888888888887766655444445689
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1077 FCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEK 1156 (1184)
Q Consensus 1077 f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~ekkk~ek 1156 (1184)
|.++|..|+..|..+++.|+..+.++++.|.+++.||||++++...++||+.|.+|+..|++|+++|.+++++|++++.+
T Consensus 311 f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~~ 390 (432)
T smart00498 311 FIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRKQ 390 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998999999999999999999999999888777665554
Q ss_pred H
Q 001026 1157 A 1157 (1184)
Q Consensus 1157 e 1157 (1184)
.
T Consensus 391 ~ 391 (432)
T smart00498 391 L 391 (432)
T ss_pred H
Confidence 4
No 4
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=100.00 E-value=6.9e-35 Score=341.09 Aligned_cols=212 Identities=41% Similarity=0.694 Sum_probs=193.4
Q ss_pred ccccccccccccccceeeccccCCcchhH-----------------------------------------------HHHH
Q 001026 926 RGLAHIELRRANNCEIMLTKVKIPLPDLM-----------------------------------------------FFLE 958 (1184)
Q Consensus 926 r~V~lLd~kRa~nl~I~L~klK~s~~ei~-----------------------------------------------Fll~ 958 (1184)
..+.|||.+|++|++|+|++++++.++|+ ||++
T Consensus 71 ~~~~iLd~kr~~ni~I~L~~~~~~~~~l~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~E~f~~~ 150 (370)
T PF02181_consen 71 KKISILDPKRSQNIGIVLKKFKLSPEELIQAILNLDEEVLTEELLENLLKILPTPEEIEALKAYKGDPATLGPAEQFLLE 150 (370)
T ss_dssp CCESSS-HHHHHHHHHHHHHHTS-HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHHHHHHHCTCTSGTTB-HHHHHHHH
T ss_pred ccccccchHHHHHHHHHhhccCCCHHHHHHHHHccCccccchHHHHHHHhcCCCchHHHHHHHHhccHHhhccHHHHHHH
Confidence 55899999999999999999999988886 9999
Q ss_pred hcCCCchhhhhhhhhhccchHHH-----------------HHcchhHHHHHHHHHHHhhhhcCCCCCcceeeeeccchhc
Q 001026 959 LMKVPRVESKLRVFSFKIQFQTQ-----------------VRNSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLK 1021 (1184)
Q Consensus 959 L~~IPrl~~RL~~l~fk~~F~~~-----------------L~~S~~L~~lL~~IL~iGN~LN~gt~rG~A~GFkL~SL~K 1021 (1184)
|++||+++.||++|+|+.+|.+. |++|+.|+.+|++||.+|||||+|+.+|+|.||+|++|.|
T Consensus 151 l~~ip~~~~rl~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~~~g~A~GF~L~sL~k 230 (370)
T PF02181_consen 151 LSKIPRLKERLEALLFKSEFEEQLEELKEKLEKLEAACEELRESKSLRRLLEIILAIGNFLNGGTPRGNAKGFKLSSLSK 230 (370)
T ss_dssp HTTSTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSTCSTTCS-SEE-GGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhccCCCccccceecHHhHHH
Confidence 99999999999999999999987 9999999999999999999999999999999999999999
Q ss_pred hhcccccCCcchHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhh
Q 001026 1022 LTDTRARNNKMTLMHYLCK------------------------IQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNF 1077 (1184)
Q Consensus 1022 L~dtKs~d~k~TLLhflvk------------------------i~L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f 1077 (1184)
|.+||++|+++||||||++ ++++++..++.++.+++..++.+++...++....+.|
T Consensus 231 L~~~Ks~d~~~tLL~~l~~~~~~~~~~~~~~~~eL~~v~~a~~~~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f 310 (370)
T PF02181_consen 231 LKDTKSNDNKTTLLHYLVKIVEEKFPDLLDLEDELSSVEKASKVSLDELEQDIKELEKGLEKIKKELEAIEKDEEDDDKF 310 (370)
T ss_dssp CCCSB-STTTSBHHHHHHHHHHTTSGGGGGHHHHTTTHHHCCTS-HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-TH
T ss_pred HHhcccccCCchHHHHHHHHHHhcChHHhccHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhh
Confidence 9999999999999999999 4677888999999999999999999988866677999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHH
Q 001026 1078 CKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFV 1137 (1184)
Q Consensus 1078 ~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk 1137 (1184)
.+.|..|++.++.++..|++.+.++++.|++++.||||+.+.+..++||++|.+|+++|+
T Consensus 311 ~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~~ff~~l~~F~~~fk 370 (370)
T PF02181_consen 311 KEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFGEDPKKMSPEEFFKILSQFIDMFK 370 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999986
No 5
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=99.97 E-value=1.8e-30 Score=305.95 Aligned_cols=221 Identities=29% Similarity=0.502 Sum_probs=200.8
Q ss_pred ccccccccccccccceeeccccCCcchhH--------------------------------------------------H
Q 001026 926 RGLAHIELRRANNCEIMLTKVKIPLPDLM--------------------------------------------------F 955 (1184)
Q Consensus 926 r~V~lLd~kRa~nl~I~L~klK~s~~ei~--------------------------------------------------F 955 (1184)
+++.+++.+|..|+.|.++ +.+..++|+ |
T Consensus 435 qk~tLle~~R~~nlaiT~R-~~~~~~~V~~Aih~~dLk~L~~~~ve~L~r~lPTe~E~kl~~~~~~e~~pme~Ls~edkF 513 (830)
T KOG1923|consen 435 QKRTLLEQRRLFNLAITRR-VQMKAKEVMAAIHPLDLKALSLEPVELLQRILPTEAEVKLLREYERERSPMENLSEEDKF 513 (830)
T ss_pred hhhhHHHHHHHHHHHHHhh-hcCchHHHHHHhhhccccccCCcHHHHHHhcCCchHHHHHHHHhhhhcCchhhcccchhh
Confidence 4589999999999999888 666767665 9
Q ss_pred HHHhcCCCchhhhhhhhhhccchHHH-----------------HHcchhHHHHHHHHHHHhhhhcCCCCCcceeeeeccc
Q 001026 956 FLELMKVPRVESKLRVFSFKIQFQTQ-----------------VRNSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDS 1018 (1184)
Q Consensus 956 ll~L~~IPrl~~RL~~l~fk~~F~~~-----------------L~~S~~L~~lL~~IL~iGN~LN~gt~rG~A~GFkL~S 1018 (1184)
++.+.+|.|+++|+..|.|+.+|.+. +++|++||.||++||++|||||.+ .||.++||+|.+
T Consensus 514 ml~lskIErle~klatM~~m~nF~dsv~ll~pq~~si~aAS~s~k~sr~lr~VleiILA~gNymns~-kRg~ayGFklqs 592 (830)
T KOG1923|consen 514 MLSLSKIERLEEKLATMEFMGNFPDSVQLLAPQLISIIAASKSLKESRKLRPVLEIILAFGNYMNSS-KRGAAYGFKLQS 592 (830)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccCCCc-ccccccceeccc
Confidence 99999999999999999999999987 899999999999999999999998 789999999999
Q ss_pred hhchhcccccCCcchHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccc
Q 001026 1019 LLKLTDTRARNNKMTLMHYLCK------------------------IQLKFLAEEMQAISKGLEKVVQELTASENDGEVS 1074 (1184)
Q Consensus 1019 L~KL~dtKs~d~k~TLLhflvk------------------------i~L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~ 1074 (1184)
|.-|.++|++|.+++||||++. ++|+.+..||.+|.+|+..+++|.+....+
T Consensus 593 lD~ll~tkStDr~~tLlh~iv~~i~eklp~l~~F~~el~~~eKa~av~lesV~~Dv~eL~~g~~l~~kE~e~~~~~---- 668 (830)
T KOG1923|consen 593 LDSLLDTKSTDRSMTLLHYIVLTIAEKLPALQLFFSELDFVEKATAVQLESVLADVKELNAGMTLAEKETEREGLD---- 668 (830)
T ss_pred cHHHhhccCCccceeeeehhhHHHHHhhHHHHhhHHHhhccchhhhhhhhccchhHHHHHhHHHHHHHHHhhhccc----
Confidence 9999999999999999999998 345566678899999999999888876654
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1075 GNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKA 1154 (1184)
Q Consensus 1075 d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~ekkk~ 1154 (1184)
..|++|+++.+.++++|++.++.+...|+.++.||||.++..+...||..|..|+..|+.+..++..+.+.|+..+
T Consensus 669 ----~iL~~F~~n~~~kmkkl~~~~k~A~~af~~~~~y~Gespk~tppt~ff~~f~~F~~~~k~~~~ene~k~~le~A~q 744 (830)
T KOG1923|consen 669 ----VILSEFLDNNKPKMKKLRKDFKDAAEAFEDVVEYFGESPKTTPPTVFFQLFVRFVRAYKMARQENEQKKKLEAALQ 744 (830)
T ss_pred ----hHHHHHHhcccHHHHHHHHHHHHHHHHHHhHhHhhCCCCCCCCCCccHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999999999887777666555
Q ss_pred HH
Q 001026 1155 EK 1156 (1184)
Q Consensus 1155 ek 1156 (1184)
++
T Consensus 745 e~ 746 (830)
T KOG1923|consen 745 EA 746 (830)
T ss_pred HH
Confidence 54
No 6
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=99.93 E-value=1.9e-24 Score=242.86 Aligned_cols=239 Identities=21% Similarity=0.380 Sum_probs=195.8
Q ss_pred ccccccccccccceeecccc---------CCcchhH---------------------------------------HHHHh
Q 001026 928 LAHIELRRANNCEIMLTKVK---------IPLPDLM---------------------------------------FFLEL 959 (1184)
Q Consensus 928 V~lLd~kRa~nl~I~L~klK---------~s~~ei~---------------------------------------Fll~L 959 (1184)
..||+.||.+.|+|.|+++- +..+++. ||+.|
T Consensus 348 ~tVL~~KRt~AINIGLT~LPPv~VI~AA~~~FD~~~~~KDGIEK~L~MmPt~eE~qkIe~aqlaNPEipLG~AEQfLLtL 427 (817)
T KOG1925|consen 348 TTVLDPKRTNAINIGLTTLPPVHVIKAALLNFDEFAVSKDGIEKLLTMMPTEEERQKIEGAQLANPEIPLGPAEQFLLTL 427 (817)
T ss_pred eeecCcccccceeeccccCCchhhhHHHHhcchhhhcchhhHHHHHHhCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHHH
Confidence 78999999999999998762 1111111 99999
Q ss_pred cCCCchhhhhhhhhhccchHHH-----------------HHcchhHHHHHHHHHHHhhhhcCCCCCcceeeeeccchhch
Q 001026 960 MKVPRVESKLRVFSFKIQFQTQ-----------------VRNSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKL 1022 (1184)
Q Consensus 960 ~~IPrl~~RL~~l~fk~~F~~~-----------------L~~S~~L~~lL~~IL~iGN~LN~gt~rG~A~GFkL~SL~KL 1022 (1184)
+.|+.+.+||++|.|++.|+.. +.+++.|+.+|.++|+||||||+. +++||.|++|.|.
T Consensus 428 SsI~~L~aRL~LWaFklDY~~~EKeiAEPL~Dlk~gm~qlE~n~Tf~~il~tLLAIGNfLnGT----~~KgFeLsYLeKv 503 (817)
T KOG1925|consen 428 SSIGGLAARLQLWAFKLDYDSMEKEIAEPLFDLKVGMEQLEQNATFRCILATLLAIGNFLNGT----QSKGFELSYLEKV 503 (817)
T ss_pred hhhHHHHHHHHHHhhhcccchhhHHhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHhccccCc----cccceehHhhhhc
Confidence 9999999999999999999875 889999999999999999999987 5679999999999
Q ss_pred hcccccCCcchHHHHHHHHHHH------HHHH-----------HHHHHHHHHHHHHHHHhhhcc------CCccchhhHH
Q 001026 1023 TDTRARNNKMTLMHYLCKIQLK------FLAE-----------EMQAISKGLEKVVQELTASEN------DGEVSGNFCK 1079 (1184)
Q Consensus 1023 ~dtKs~d~k~TLLhflvki~L~------~L~~-----------El~~l~k~L~kv~~el~~s~~------d~~~~d~f~~ 1079 (1184)
.++|++..|.+|+|+||++.++ +|-. |+++|.++|..+++.+.+++. ..+....++.
T Consensus 504 sEVKDtV~KqsLlhHlc~~vVE~FpessDLYSEiGA~tRSAkVDf~qL~DNL~qlErrCKaSWe~L~~Iakhe~~p~l~~ 583 (817)
T KOG1925|consen 504 SEVKDTVRKQSLLHHLCSLVVETFPESSDLYSEIGALTRSAKVDFEQLTDNLGQLERRCKASWESLRSIAKHELAPALRA 583 (817)
T ss_pred hhhcchHHHHHHHHHHHHHHHHhCCcchhHHHHhHhhhhhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHhhhccHHHHH
Confidence 9999999999999999993222 2222 345556666666666666543 2334456788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1080 LLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPA---RCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEK 1156 (1184)
Q Consensus 1080 ~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~---~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~ekkk~ek 1156 (1184)
.|..|++++.++|..|+..+..+.+.|..++.|||..+. ...+++||.++.+|.-+|+..++..++++++...++|+
T Consensus 584 r~~~fl~~cA~RI~~LKivhrr~~NRfHSFLLy~Gy~p~aIrev~iN~fc~~~~EFaLEYRTTRervLQQ~qk~A~~RER 663 (817)
T KOG1925|consen 584 RLTHFLDQCARRIAMLKIVHRRVCNRFHSFLLYLGYTPQAIREVRINQFCHTLREFALEYRTTRERVLQQQQKQATYRER 663 (817)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999765 44689999999999999999999999888776666666
Q ss_pred HHHHHHHHhhhccc
Q 001026 1157 AVENEKLKTQKGQS 1170 (1184)
Q Consensus 1157 eaekek~k~~~~e~ 1170 (1184)
...+.|+-...|+.
T Consensus 664 NKTRGKmit~~Gkf 677 (817)
T KOG1925|consen 664 NKTRGKMITETGKF 677 (817)
T ss_pred cccccceeeecccc
Confidence 66666655544443
No 7
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=99.91 E-value=6.9e-23 Score=262.87 Aligned_cols=227 Identities=42% Similarity=0.643 Sum_probs=201.8
Q ss_pred cccccccccccccceeeccccCCcchhH-----------------------------------------------HHH-H
Q 001026 927 GLAHIELRRANNCEIMLTKVKIPLPDLM-----------------------------------------------FFL-E 958 (1184)
Q Consensus 927 ~V~lLd~kRa~nl~I~L~klK~s~~ei~-----------------------------------------------Fll-~ 958 (1184)
...+++.++.+|++|+|..+++..+|+. ||. .
T Consensus 462 ~~~v~~~r~~~n~~ill~sl~~~~~~~~~a~~~~~~~~~~~~~l~~l~~~~pt~~E~~~l~~~~~~~~~l~~~e~~~~~~ 541 (833)
T KOG1922|consen 462 RLKVLDPRRPQNIAILLSSLNMPTEDIPQALLELDDSVLGLDQLEKLLKFAPTKEEETKLKEESGDPLTLGDAEKFFFEE 541 (833)
T ss_pred cccccCCCCccceeeehhhcCCchHHHHHHHhccCccccCHHHHHHHHccCCChhHHHHHHhhcCCCCccchHHHHHHHH
Confidence 3678999999999999999987766554 444 4
Q ss_pred hcCCCchhhhhhhhhhccchHHH-----------------HHcchhHHHHHHHHHHHhhhhcCCCCCcceeeeeccchhc
Q 001026 959 LMKVPRVESKLRVFSFKIQFQTQ-----------------VRNSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLK 1021 (1184)
Q Consensus 959 L~~IPrl~~RL~~l~fk~~F~~~-----------------L~~S~~L~~lL~~IL~iGN~LN~gt~rG~A~GFkL~SL~K 1021 (1184)
+..|+++..|+++++|+..|... ++++++|.+++++||..|||||.|+.||+|+||+|++|.|
T Consensus 542 ~~~ip~~~~~~~~~~f~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~~~~~~e~il~~Gn~mN~g~~rg~a~~f~l~~l~k 621 (833)
T KOG1922|consen 542 LSGIPEFEERLQALSFRSKFSEEVTALKKKLETVEVASKELLESKKFLKILEIILAAGNRMNAGTNRGSAHGFKLDALLK 621 (833)
T ss_pred hhcchHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccccccccchhhHHHHhh
Confidence 77899999999999999877765 8999999999999999999999999999999999999999
Q ss_pred hhcccccCCcchHHHHHHH----------------------------------------HHHHHHHHHHHHHHHHHHHHH
Q 001026 1022 LTDTRARNNKMTLMHYLCK----------------------------------------IQLKFLAEEMQAISKGLEKVV 1061 (1184)
Q Consensus 1022 L~dtKs~d~k~TLLhflvk----------------------------------------i~L~~L~~El~~l~k~L~kv~ 1061 (1184)
|.|+|+.++++++||+++. ++++.+.+++.++.+++++++
T Consensus 622 l~d~ks~~~~~~~l~~~~~e~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~l~~v~~aa~i~~~~l~~~~~~l~~~~~~~~ 701 (833)
T KOG1922|consen 622 LSDVKSSDGKTTLLHFVVPEVVRSEGKRSVIDVEKSRRLGLPSLLKFLSDLSNVESAAKIDLEVLAEECSDLKKGLEKVK 701 (833)
T ss_pred hhhhhcccccchhhhhhHHHHHHhhccccchhhhhhhhccchhhhcccchhcccchhhccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999776666655 345677889999999999999
Q ss_pred HHHh-hhccC-CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC-CCCCHHHHHHHHHHHHHHHHH
Q 001026 1062 QELT-ASEND-GEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDP-ARCPFEQVVSTLLNFVKMFVL 1138 (1184)
Q Consensus 1062 ~el~-~s~~d-~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~-~~~~~e~ff~~l~~F~~~fk~ 1138 (1184)
+++. ++.++ +...+.|.+.|..|+..++.++..|..++.++...+.++++|||+++ ......++|.++.+|+..|++
T Consensus 702 ~~l~~~~~~~~~~~~~~f~~~~~~fl~~ae~ev~~l~~~~~~~~~~~~~~~~yf~~~~~~~~~~~~~f~~~r~fl~~~~~ 781 (833)
T KOG1922|consen 702 RELPTASKNESLPPGDPFSKVKKEFLSSAEKEVKLLISEEREVRESVKKTAKYFGEDPKEEITPEQVFSILRDFLRTFDK 781 (833)
T ss_pred HHhhhhhcCCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCHHHHHHHHHHHHHHHHH
Confidence 9995 66555 55678999999999999999999999999999999999999999999 577889999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 001026 1139 AHEENCRQLEFERKK 1153 (1184)
Q Consensus 1139 a~ee~~k~~e~ekkk 1153 (1184)
+++++.+.+++++..
T Consensus 782 ~~~e~~~~~~k~~~~ 796 (833)
T KOG1922|consen 782 AHEENKKAEEKEKTY 796 (833)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999888766544
No 8
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=99.91 E-value=4.8e-24 Score=214.73 Aligned_cols=120 Identities=34% Similarity=0.616 Sum_probs=97.7
Q ss_pred CccccCCcCCCCCceeEEEEEecCCCcccCCCCcEEEeCccCccceeeecccCccEEEEeccccccCCeEEEEEecCCcC
Q 001026 179 QLRVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVRHYKQADCELVKIDIHCHIQGDVVLECISLDSDQ 258 (1184)
Q Consensus 179 qlr~VP~f~~~~gcrP~l~Iy~~~~~~~~~~~~~~lfss~~~~~~~~~~~~~d~~~i~i~~~~~v~GDV~i~~~h~~~~~ 258 (1184)
.|++||.|+..+|||||++||+. .+.+|.+.........|.+.. ..|.++.++.|+|||+|+|||.+...
T Consensus 12 ~l~~iP~f~~~~gc~p~i~I~~~---------~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~GDV~i~~~~~~~~~ 81 (134)
T PF10409_consen 12 ILHGIPNFNSGGGCRPYIEIYNG---------GKKVFSTSKSYEDPKSYEQDS-VIIELPKNLPLRGDVLIKFYHKRSSS 81 (134)
T ss_dssp EEES-TTSTTSSCCTEEEEEEET---------TEEEEETCCTCCCCCEEETTC-EEEEEEEEEEEESEEEEEEEECETTE
T ss_pred EEECCCccCCCCCEEEEEEEECC---------CccEEEeccceecccccccee-EEEEeCCCCeEeCCEEEEEEeCCCcc
Confidence 35889999888999999999987 467765544444455554443 45677778999999999999998766
Q ss_pred ccceeEEEEEeeccccc--CCEEEeccccccccccC-CCcCCcccceEEEEec
Q 001026 259 EREEMMFRVMFNTAFIR--SNILMLNRDEIDILWNS-KDLFSKEFRAEVLFSE 308 (1184)
Q Consensus 259 ~~~~~~Fr~~FnT~FI~--~~~L~l~k~eLD~~~~~-~~~fp~dF~vel~F~~ 308 (1184)
..+++||||||||+||+ +++|+|+|+|||+++++ +++|++||+|||+|+|
T Consensus 82 ~~~~~~f~~~FnT~Fi~~~~~~l~~~k~eLD~~~kdk~k~f~~~f~Vel~f~e 134 (134)
T PF10409_consen 82 MSKEKMFRFWFNTGFIEPNNNVLRFTKSELDKAHKDKHKRFPPDFKVELVFSE 134 (134)
T ss_dssp CCCEEEEEEEEEGGGSBTTTCEEEEEGGGSBTCCCGCTCCS-TT-EEEEEEEE
T ss_pred cccCeEEEEEEeeeeeeccccEEEcCHHHCCCcccCcccccCCCeEEEEEEeC
Confidence 77789999999999999 99999999999999974 4999999999999986
No 9
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=99.74 E-value=3.6e-17 Score=192.79 Aligned_cols=139 Identities=17% Similarity=0.143 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhhC
Q 001026 1041 IQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVG------RNADALAQYFG 1114 (1184)
Q Consensus 1041 i~L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~------~~~~~l~~yFG 1114 (1184)
+.|++|++.+++...++.++..+|+++++...++ .+.+++-++..+..+..|+..+...+ ..|.+.+..|.
T Consensus 862 TLLHfLae~~e~kypd~l~F~ddl~hv~kaSrvn---ad~ikK~~~~m~~~ik~Le~dlk~~~~~~~e~dkF~ekM~~F~ 938 (1102)
T KOG1924|consen 862 TLLHFLAEICEEKYPDILKFPDDLEHVEKASRVN---ADEIKKNLQQMENQIKKLERDLKNFKIAGNEHDKFVEKMTSFH 938 (1102)
T ss_pred HHHHHHHHHHHHhChhhhcchhhHHHHHhhcccc---HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHhhHHH
Confidence 5689999999999999999999999988766553 33445555556666666666655432 46677777776
Q ss_pred CCCCCC---------CH-------HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchh
Q 001026 1115 EDPARC---------PF-------EQVVS------TLLNFVKMFVLAHEENCRQLEFERKKAEKAVENEKLKTQKGQSEH 1172 (1184)
Q Consensus 1115 Ed~~~~---------~~-------e~ff~------~l~~F~~~fk~a~ee~~k~~e~ekkk~ekeaekek~k~~~~e~~~ 1172 (1184)
|+..+. .+ -++|. .+++|+.+++..+..+.++..++.|+++.++++++.+.+++++++
T Consensus 939 e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kkysmEEFFaDi~tFrnaf~ea~~en~krRee~Ek~rr~k~a~eqseq 1018 (1102)
T KOG1924|consen 939 EKAREQYSKLSSMHGNMEKLYESLGEYYAFDPKKYSMEEFFADIRTFRNAFLEAVAENEKRREEEEKERRAKLAKEQSEQ 1018 (1102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHeecCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654311 11 12222 567888888888888888788888888888888888888888888
Q ss_pred hhcCcCccCC
Q 001026 1173 LVQNPLKSST 1182 (1184)
Q Consensus 1173 ~~q~~~~~~~ 1182 (1184)
++++.+|+|+
T Consensus 1019 Er~erQqrk~ 1028 (1102)
T KOG1924|consen 1019 ERLERQQRKK 1028 (1102)
T ss_pred HHHHHhhhhH
Confidence 8888887763
No 10
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.43 E-value=1.2e-12 Score=136.76 Aligned_cols=128 Identities=12% Similarity=0.153 Sum_probs=96.7
Q ss_pred CCCCceeeeCcEEEecCCCCCCcchhHHhhccHHHHHHHHhhhCCCCcEEEEEeccCCcCcccccccccCCceEEecCCC
Q 001026 12 PPDGLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRH 91 (1184)
Q Consensus 12 ~~lDLtyIT~RIiams~gfPa~~~~e~~YRN~i~dV~~fL~~~H~~~~y~V~Nl~ee~~~~~~~~~~~~f~~~V~~~P~~ 91 (1184)
+|-.++||+.|+|||. =|.+. .+.+-++.|+..+ =..|.|+|++.|+.. .+...+..+.+||+.
T Consensus 7 ~~~~~~~~~~r~~~~~--~P~~~--------~~~~~l~~L~~~g---I~~Iv~l~~~~~~~~---~~~~~gi~~~~~p~~ 70 (166)
T PTZ00242 7 KDRQIEYVLFKFLILD--APSPS--------NLPLYIKELQRYN---VTHLVRVCGPTYDAE---LLEKNGIEVHDWPFD 70 (166)
T ss_pred CCcceeeeceEEEEec--CCCcc--------cHHHHHHHHHhCC---CeEEEecCCCCCCHH---HHHHCCCEEEecCCC
Confidence 4557999999999997 34321 1222235555543 267999998755432 234567789999875
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhc--CCCcEEEEEecCCCCCchHHHHHHHHHHhhCCCcHHHHHHHHh
Q 001026 92 YEGCPLLTMETVHHFLRSSESWLSL--GHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIY 159 (1184)
Q Consensus 92 ~~~~p~p~L~~l~~~c~~i~~WL~~--d~~NVvvvHCk~Gkgr~tg~mia~yLly~~~~~~~~~aL~~~~ 159 (1184)
+ +.+|+.+.+..|++-+++++.. +.++.|+|||.+|.|| ||+++||||+..+.+ +.++|++++-
T Consensus 71 D--~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigR-Sgt~~a~yL~~~~~~-s~~eAi~~vr 136 (166)
T PTZ00242 71 D--GAPPPKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGR-APILVALALVEYGGM-EPLDAVGFVR 136 (166)
T ss_pred C--CCCCCHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCH-HHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4 4468999999999999998876 6788999999999999 999999999998866 6788999884
No 11
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.15 E-value=2.1e-10 Score=124.36 Aligned_cols=119 Identities=13% Similarity=0.151 Sum_probs=85.5
Q ss_pred eeeeCcEEEecCCCCCCcchhHHhhccHHHHHHHHhhhCCCCcEEEEEeccCCcCcccccccccCCceEEecCCCCCCCC
Q 001026 17 LEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCP 96 (1184)
Q Consensus 17 tyIT~RIiams~gfPa~~~~e~~YRN~i~dV~~fL~~~H~~~~y~V~Nl~ee~~~~~~~~~~~~f~~~V~~~P~~~~~~p 96 (1184)
.|-.=|+|+|+ =|.. ..+-.+| +.|+..+= ..|..+|++.|+.. .+...+.++.++|+. |+.
T Consensus 88 e~~~~rfLi~~--~P~~----~~~~~yl----~eLk~~gV---~~lVrlcE~~Yd~~---~~~~~GI~~~~lpip--Dg~ 149 (241)
T PTZ00393 88 EHGKIKILILD--APTN----DLLPLYI----KEMKNYNV---TDLVRTCERTYNDG---EITSAGINVHELIFP--DGD 149 (241)
T ss_pred ccCceeEEEeC--CCCH----HHHHHHH----HHHHHcCC---CEEEECCCCCCCHH---HHHHcCCeEEEeecC--CCC
Confidence 33344899997 5553 2222222 44444433 46888999865421 134457788898765 556
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHHHHHHHHhhCCCcHHHHHHHH
Q 001026 97 LLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMI 158 (1184)
Q Consensus 97 ~p~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~~~~~~~~aL~~~ 158 (1184)
+|+++.|.+|+.-++.++.. +..|+|||++|.|| ||+|+||||+..|+ +.++|++++
T Consensus 150 aPs~~~i~~~l~~i~~~l~~--g~~VaVHC~AGlGR-TGtl~AayLI~~Gm--speeAI~~V 206 (241)
T PTZ00393 150 APTVDIVSNWLTIVNNVIKN--NRAVAVHCVAGLGR-APVLASIVLIEFGM--DPIDAIVFI 206 (241)
T ss_pred CCCHHHHHHHHHHHHHHHhc--CCeEEEECCCCCCH-HHHHHHHHHHHcCC--CHHHHHHHH
Confidence 78999999999988888864 44899999999999 99999999998654 788899987
No 12
>PHA03247 large tegument protein UL36; Provisional
Probab=99.11 E-value=7e-07 Score=118.35 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 001026 1046 LAEEMQAISKGLEKVVQELT 1065 (1184)
Q Consensus 1046 L~~El~~l~k~L~kv~~el~ 1065 (1184)
|.+.++.|.+.|+..++.|.
T Consensus 3114 Li~ACr~i~r~lr~TR~~L~ 3133 (3151)
T PHA03247 3114 LIEACRRIRRQLRRTRHALL 3133 (3151)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444
No 13
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.07 E-value=6.9e-10 Score=116.38 Aligned_cols=132 Identities=10% Similarity=0.119 Sum_probs=89.4
Q ss_pred CCCCceeeeCc-EEEecCCCC-CCcchhHHhh-ccHHHHHHHHhhhCCCCcEEEEEeccCCcCcccccccccCCce-EEe
Q 001026 12 PPDGLLEISER-VFVFDCCFT-TDILEEEEYK-EYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMT-VMD 87 (1184)
Q Consensus 12 ~~lDLtyIT~R-Iiams~gfP-a~~~~e~~YR-N~i~dV~~fL~~~H~~~~y~V~Nl~ee~~~~~~~~~~~~f~~~-V~~ 87 (1184)
...|.++|+.. +|++...-. +-++ |..|- +-...+..+|+ |.+ -=.|+-|.++-|+. +.|... +.+
T Consensus 49 e~gdfnwI~p~~~i~f~~p~~~s~gi-~~~f~~~~~~~~~~~~~--~~~-v~s~vrln~~~yd~------~~f~~~Gi~h 118 (225)
T KOG1720|consen 49 ENGDFNWIIPDRFIAFAGPHLKSRGI-ESGFPLHLPQPYIQYFK--NNN-VTSIVRLNKRLYDA------KRFTDAGIDH 118 (225)
T ss_pred CCCCcceeccchhhhhcCccccccch-hhcccccCChhHHHHhh--hcc-cceEEEcCCCCCCh------HHhcccCcee
Confidence 45899999995 677641111 1123 44454 45555667777 222 13466776665543 345433 333
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHHHHHHHHhhCCCcHHHHHHHH
Q 001026 88 YPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMI 158 (1184)
Q Consensus 88 ~P~~~~~~p~p~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~~~~~~~~aL~~~ 158 (1184)
|-.-++|..+|.++.+.+|++.+++-++ .-.++|||++|.|| ||+||||||||...+ ++.+|++++
T Consensus 119 ~~l~f~Dg~tP~~~~v~~fv~i~e~~~~---~g~iaVHCkaGlGR-TG~liAc~lmy~~g~-ta~eaI~~l 184 (225)
T KOG1720|consen 119 HDLFFADGSTPTDAIVKEFVKIVENAEK---GGKIAVHCKAGLGR-TGTLIACYLMYEYGM-TAGEAIAWL 184 (225)
T ss_pred eeeecCCCCCCCHHHHHHHHHHHHHHHh---cCeEEEEeccCCCc-hhHHHHHHHHHHhCC-CHHHHHHHH
Confidence 3223456667999999999999999887 44899999999999 999999999999554 556688865
No 14
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=98.81 E-value=1.1e-08 Score=105.24 Aligned_cols=124 Identities=13% Similarity=0.181 Sum_probs=73.3
Q ss_pred eCcEEEecCCCCCCcchhHHhhccHHHHHHHHhhhCCCCcEEEEEeccCCcC-----cccccccccCCceEEecCCCCCC
Q 001026 20 SERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQ-----SQIGQVLSEYDMTVMDYPRHYEG 94 (1184)
Q Consensus 20 T~RIiams~gfPa~~~~e~~YRN~i~dV~~fL~~~H~~~~y~V~Nl~ee~~~-----~~~~~~~~~f~~~V~~~P~~~~~ 94 (1184)
+.+|..+ ..|+-.+ . .+|.+++.=...|+...-. .|+-|+++.-- .++.+......+++.+||+.+-+
T Consensus 40 ~~~Lglt--~~PG~k~-~-d~~RdL~~DL~~Lk~~G~~---~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~ 112 (168)
T PF05706_consen 40 SGFLGLT--FLPGCKF-K-DWRRDLQADLERLKDWGAQ---DVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGS 112 (168)
T ss_dssp SSEEEEE--S-TT-EE-T-TEEB-HHHHHHHHHHTT-----EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS
T ss_pred cceeeee--cCCCccc-c-cccchHHHHHHHHHHCCCC---EEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCC
Confidence 3455554 4676544 3 3454554445566654433 46667754221 12333345677899999986544
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHHHHHHHHhhCCCcHHHHH
Q 001026 95 CPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTL 155 (1184)
Q Consensus 95 ~p~p~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~~~~~~~~aL 155 (1184)
+|.++.+..++..+..+|.++. .|+|||++|.|| ||+|+||+|+..+...+.++|+
T Consensus 113 --aPd~~~~~~i~~eL~~~L~~g~--~V~vHC~GGlGR-tGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 113 --APDFAAAWQILEELAARLENGR--KVLVHCRGGLGR-TGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp -----HHHHHHHHHHHHHHHHTT----EEEE-SSSSSH-HHHHHHHHHHHH-SSS-HHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHHcCC--EEEEECCCCCCH-HHHHHHHHHHHHcCCCChhhcC
Confidence 5689999999999999999754 789999999999 9999999999999887877774
No 15
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=98.80 E-value=5.4e-08 Score=98.32 Aligned_cols=115 Identities=14% Similarity=0.159 Sum_probs=77.6
Q ss_pred eeeeCcEEEecCCCCCCcchhHHhhccHHHHHHHHhhhCCCCcEEEEEeccCCcCcccccccccCCceEEecCCCCCCCC
Q 001026 17 LEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCP 96 (1184)
Q Consensus 17 tyIT~RIiams~gfPa~~~~e~~YRN~i~dV~~fL~~~H~~~~y~V~Nl~ee~~~~~~~~~~~~f~~~V~~~P~~~~~~p 96 (1184)
+.|+++|++-+ +++.. + ..+|.+. +- -.|.||+++...+ ...+.+..++|..|.+ .
T Consensus 2 ~~I~~~l~~G~--~~~~~--------~----~~~l~~~-gi--~~Vi~l~~~~~~~------~~~~~~~~~ipi~D~~-~ 57 (138)
T smart00195 2 SEILPHLYLGS--YSSAL--------N----LALLKKL-GI--THVINVTNEVPNL------NKKGFTYLGVPILDNT-E 57 (138)
T ss_pred cEEeCCeEECC--hhHcC--------C----HHHHHHc-CC--CEEEEccCCCCCC------CCCCCEEEEEECCCCC-C
Confidence 57999988874 66531 1 3455543 22 5799999886532 2345677788876632 2
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHHHHHHHHhhCCCcHHHHHHHHh
Q 001026 97 LLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIY 159 (1184)
Q Consensus 97 ~p~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~~~~~~~~aL~~~~ 159 (1184)
....+.+..+++-|+..+. .+.-|+|||++|.+| +|+++||||++...+ +.++|++++.
T Consensus 58 ~~~~~~~~~~~~~i~~~~~--~~~~VlVHC~~G~~R-S~~v~~~yl~~~~~~-~~~~A~~~v~ 116 (138)
T smart00195 58 TKISPYFPEAVEFIEDAEK--KGGKVLVHCQAGVSR-SATLIIAYLMKYRNL-SLNDAYDFVK 116 (138)
T ss_pred CChHHHHHHHHHHHHHHhc--CCCeEEEECCCCCch-HHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 2334445555555555443 345799999999999 899999999998776 5778999874
No 16
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=98.58 E-value=4.9e-07 Score=91.01 Aligned_cols=117 Identities=14% Similarity=0.107 Sum_probs=77.2
Q ss_pred ceeeeCcEEEecCCCCCCcchhHHhhccHHHHHHHHhhhCCCCcEEEEEeccCCcCcccccccccCCceEEecCCCCCCC
Q 001026 16 LLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGC 95 (1184)
Q Consensus 16 LtyIT~RIiams~gfPa~~~~e~~YRN~i~dV~~fL~~~H~~~~y~V~Nl~ee~~~~~~~~~~~~f~~~V~~~P~~~~~~ 95 (1184)
++.|+++|++= ++++..- ..+|.+ ++- -.|+||+++..+.. ...-...+.+||+.+.+
T Consensus 2 ~~~i~~~l~~g--~~~~~~d------------~~~L~~-~gi--~~VI~l~~~~~~~~----~~~~~~~~~~~~~~D~~- 59 (139)
T cd00127 2 LSEITPGLYLG--SYPAASD------------KELLKK-LGI--THVLNVAKEVPNEN----LFLSDFNYLYVPILDLP- 59 (139)
T ss_pred cCEEcCCeEEC--ChhHhcC------------HHHHHH-cCC--CEEEEcccCCCCcc----cCCCCceEEEEEceeCC-
Confidence 68899999887 4665311 334433 333 47999998876411 12334566777665333
Q ss_pred CCCcH-HHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHHHHHHHHhhCCCcHHHHHHHHh
Q 001026 96 PLLTM-ETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIY 159 (1184)
Q Consensus 96 p~p~L-~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~~~~~~~~aL~~~~ 159 (1184)
...+ ..+..+++-|+..+.. +.-|+|||.+|.|| +|+|+++||++.+.+ +.++|++++.
T Consensus 60 -~~~~~~~~~~~~~~i~~~~~~--~~~vlVHC~~G~~R-s~~~~~~~l~~~~~~-~~~~a~~~vr 119 (139)
T cd00127 60 -SQDISKYFDEAVDFIDDAREK--GGKVLVHCLAGVSR-SATLVIAYLMKTLGL-SLREAYEFVK 119 (139)
T ss_pred -CCChHHHHHHHHHHHHHHHhc--CCcEEEECCCCCch-hHHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 2333 3455556666655544 34799999999999 899999999987755 6677999874
No 17
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=98.53 E-value=2.3e-07 Score=93.00 Aligned_cols=101 Identities=16% Similarity=0.197 Sum_probs=69.8
Q ss_pred HHHHhhhCCCCcEEEEEeccCCcCcccccccccCCceEEecCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEec
Q 001026 48 VGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCE 127 (1184)
Q Consensus 48 ~~fL~~~H~~~~y~V~Nl~ee~~~~~~~~~~~~f~~~V~~~P~~~~~~p~p~L~~l~~~c~~i~~WL~~d~~NVvvvHCk 127 (1184)
..+|.+..= =.|.|++++..... .....+.....+|.++.+ ..+..+.+..+++-|+++..++ ..|+|||+
T Consensus 11 ~~~l~~~~I---~~Vin~~~~~~~~~---~~~~~~~~~~~i~~~D~~-~~~~~~~~~~~~~~i~~~~~~~--~~VlVHC~ 81 (133)
T PF00782_consen 11 IAFLKNLGI---THVINLQEECPNPY---FYKPEGIEYLRIPIDDDP-EEPILEHLDQAVEFIENAISEG--GKVLVHCK 81 (133)
T ss_dssp HHHHHHTTE---EEEEECSSSSSTSH---HHTTTTSEEEEEEEESST-TSHGGGGHHHHHHHHHHHHHTT--SEEEEEES
T ss_pred HHHHHHCCC---CEEEEccCCCcCch---hcccCCCEEEEEEecCCC-CcchHHHHHHHHHhhhhhhccc--ceeEEEeC
Confidence 455555431 36889998754411 012344456666655422 2356677777888888876544 57999999
Q ss_pred CCCCCchHHHHHHHHHHhhCCCcHHHHHHHHh
Q 001026 128 RGGWPVLAFMLAALLIYRKQFTGEQKTLDMIY 159 (1184)
Q Consensus 128 ~Gkgr~tg~mia~yLly~~~~~~~~~aL~~~~ 159 (1184)
+|.+| +|+++||||++.+.+ +.++|++++.
T Consensus 82 ~G~~R-S~~v~~ayLm~~~~~-~~~~A~~~v~ 111 (133)
T PF00782_consen 82 AGLSR-SGAVAAAYLMKKNGM-SLEEAIEYVR 111 (133)
T ss_dssp SSSSH-HHHHHHHHHHHHHTS-SHHHHHHHHH
T ss_pred CCccc-chHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 99999 899999999998877 6778999874
No 18
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.51 E-value=3.5e-07 Score=97.21 Aligned_cols=72 Identities=18% Similarity=0.281 Sum_probs=60.6
Q ss_pred CceEEecCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHHHHHHHHhhCCCcHHHHHHHH
Q 001026 82 DMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMI 158 (1184)
Q Consensus 82 ~~~V~~~P~~~~~~p~p~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~~~~~~~~aL~~~ 158 (1184)
...+.++| ++|+..|.+..|.++..-|++-++++. .|||||++|.|| |||+||+||++.+.+...++++..+
T Consensus 72 ~~~~~~~~--~~D~~~p~~~~l~~~v~~i~~~~~~g~--kVvVHC~~GigR-SgtviaA~lm~~~~~~~~~~~i~~~ 143 (180)
T COG2453 72 GIQVLHLP--ILDGTVPDLEDLDKIVDFIEEALSKGK--KVVVHCQGGIGR-SGTVIAAYLMLYGGLSLADEAIAVK 143 (180)
T ss_pred Cceeeeee--ecCCCCCcHHHHHHHHHHHHHHHhcCC--eEEEEcCCCCch-HHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34455554 457778899999999998888887666 899999999999 9999999999999899999888765
No 19
>PRK12361 hypothetical protein; Provisional
Probab=98.41 E-value=2e-06 Score=106.59 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=90.8
Q ss_pred CceeeeCcEEEecCCCCCCcchhHHhhccHHHHHHHHhhhCCCCcEEEEEeccCCcCcccccccccCCceEEecCCCCCC
Q 001026 15 GLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEG 94 (1184)
Q Consensus 15 DLtyIT~RIiams~gfPa~~~~e~~YRN~i~dV~~fL~~~H~~~~y~V~Nl~ee~~~~~~~~~~~~f~~~V~~~P~~~~~ 94 (1184)
-...|+++|+.-+ ++... + ..+|++ ++- =.|.||++|..... +....-+.+..++|..|
T Consensus 94 ~~~~I~~~l~lG~--~~~a~--------d----~~~L~~-~gI--~~Vldlt~E~~~~~--~~~~~~~i~yl~iPi~D-- 152 (547)
T PRK12361 94 AIQKIDENLYLGC--RLFPA--------D----LEKLKS-NKI--TAILDVTAEFDGLD--WSLTEEDIDYLNIPILD-- 152 (547)
T ss_pred cceEEcCcEEECC--CCCcc--------c----HHHHHH-cCC--CEEEEccccccccc--ccccccCceEEEeecCC--
Confidence 5789999999984 65421 1 345553 443 25779986632210 00011224566677654
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHHHHHHHHhhCCCcHHHHHHHHhh--------hchhhh
Q 001026 95 CPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYK--------QAPREL 166 (1184)
Q Consensus 95 ~p~p~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~~~~~~~~aL~~~~~--------pSq~ry 166 (1184)
+..|.++.+.+.++-|+++++++. -|+|||++|.+| +++|++|||++.+...+.++|++++-. ..|.+.
T Consensus 153 ~~~p~~~~l~~a~~~i~~~~~~~~--~VlVHC~~G~sR-Sa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~ 229 (547)
T PRK12361 153 HSVPTLAQLNQAINWIHRQVRANK--SVVVHCALGRGR-SVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRA 229 (547)
T ss_pred CCCCcHHHHHHHHHHHHHHHHCCC--eEEEECCCCCCc-HHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHH
Confidence 446788999999999999887644 599999999999 899999999998877788999999831 255555
Q ss_pred hccc
Q 001026 167 LQLM 170 (1184)
Q Consensus 167 l~yf 170 (1184)
++.|
T Consensus 230 l~~~ 233 (547)
T PRK12361 230 LEKM 233 (547)
T ss_pred HHHH
Confidence 5544
No 20
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=98.29 E-value=1.4e-06 Score=82.71 Aligned_cols=57 Identities=14% Similarity=0.238 Sum_probs=46.4
Q ss_pred CCCCCCCCcH-HHHHHHHHHHHHHHhcCC-CcEEEEEecCCCCCchHHHHHHHHHHhhCC
Q 001026 91 HYEGCPLLTM-ETVHHFLRSSESWLSLGH-QNVLLMHCERGGWPVLAFMLAALLIYRKQF 148 (1184)
Q Consensus 91 ~~~~~p~p~L-~~l~~~c~~i~~WL~~d~-~NVvvvHCk~Gkgr~tg~mia~yLly~~~~ 148 (1184)
+|.+...|.. +.+++|++.++.|..... ++-++|||.+|.|| ||+++|+||++.+..
T Consensus 9 ~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gR-tg~~~~~~~~~~~~~ 67 (105)
T smart00404 9 GWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGR-TGTFVALDILLQQLE 67 (105)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCh-hhHHHHHHHHHHHHH
Confidence 3444445544 899999999999998643 56899999999999 899999999998764
No 21
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=98.29 E-value=1.4e-06 Score=82.71 Aligned_cols=57 Identities=14% Similarity=0.238 Sum_probs=46.4
Q ss_pred CCCCCCCCcH-HHHHHHHHHHHHHHhcCC-CcEEEEEecCCCCCchHHHHHHHHHHhhCC
Q 001026 91 HYEGCPLLTM-ETVHHFLRSSESWLSLGH-QNVLLMHCERGGWPVLAFMLAALLIYRKQF 148 (1184)
Q Consensus 91 ~~~~~p~p~L-~~l~~~c~~i~~WL~~d~-~NVvvvHCk~Gkgr~tg~mia~yLly~~~~ 148 (1184)
+|.+...|.. +.+++|++.++.|..... ++-++|||.+|.|| ||+++|+||++.+..
T Consensus 9 ~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gR-tg~~~~~~~~~~~~~ 67 (105)
T smart00012 9 GWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGR-TGTFVALDILLQQLE 67 (105)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCh-hhHHHHHHHHHHHHH
Confidence 3444445544 899999999999998643 56899999999999 899999999998764
No 22
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=98.20 E-value=2.5e-06 Score=85.77 Aligned_cols=59 Identities=22% Similarity=0.361 Sum_probs=52.6
Q ss_pred CCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHHHHHHHHhhCCCcHHHHHHHHh
Q 001026 97 LLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIY 159 (1184)
Q Consensus 97 ~p~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~~~~~~~~aL~~~~ 159 (1184)
.|+++.|..-++-|++..++++ -+-||||||.+| ++||++|||+-.+-++-++ |.+++.
T Consensus 89 ~Ps~~~i~~aVeFi~k~asLGk--tvYVHCKAGRtR-SaTvV~cYLmq~~~wtpe~-A~~~vr 147 (183)
T KOG1719|consen 89 APSLENIQKAVEFIHKNASLGK--TVYVHCKAGRTR-SATVVACYLMQHKNWTPEA-AVEHVR 147 (183)
T ss_pred CCCHHHHHHHHHHHHhccccCC--eEEEEecCCCcc-chhhhhhhhhhhcCCCHHH-HHHHHH
Confidence 6899999999999999999888 899999999999 7999999999988876544 888774
No 23
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=97.94 E-value=0.00016 Score=84.36 Aligned_cols=6 Identities=50% Similarity=0.290 Sum_probs=3.0
Q ss_pred eeeccc
Q 001026 941 IMLTKV 946 (1184)
Q Consensus 941 I~L~kl 946 (1184)
+.|+++
T Consensus 506 ~~Lk~v 511 (569)
T KOG3671|consen 506 GQLKKV 511 (569)
T ss_pred cccccc
Confidence 445555
No 24
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=97.73 E-value=9.6e-05 Score=87.95 Aligned_cols=74 Identities=14% Similarity=0.217 Sum_probs=50.5
Q ss_pred ceEEecCCCCCCCCCC-cHHHHHHHHHHHHHHHhcC-------CCcEEEEEecCCCCCchHHHHHHHHHHhhCCCcHHHH
Q 001026 83 MTVMDYPRHYEGCPLL-TMETVHHFLRSSESWLSLG-------HQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKT 154 (1184)
Q Consensus 83 ~~V~~~P~~~~~~p~p-~L~~l~~~c~~i~~WL~~d-------~~NVvvvHCk~Gkgr~tg~mia~yLly~~~~~~~~~a 154 (1184)
..+++| .+|.||-.| .-+.|++|.+.++.|-..+ .+...||||.||-|| |||+||||++...-..+-++.
T Consensus 423 V~QFHy-TnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGR-TGTFIAi~llk~~~~~sle~I 500 (535)
T PRK15375 423 IPVLHV-KNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGR-TGTMAAALVLKDNPHSNLEQV 500 (535)
T ss_pred EEEEEe-CCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCch-HHHHHHHHHHhccccCCHHHH
Confidence 345556 356666554 4467888999888874322 112358999999999 999999999875544555656
Q ss_pred HHHH
Q 001026 155 LDMI 158 (1184)
Q Consensus 155 L~~~ 158 (1184)
+..+
T Consensus 501 V~dl 504 (535)
T PRK15375 501 RADF 504 (535)
T ss_pred HHHH
Confidence 5544
No 25
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=97.64 E-value=0.00096 Score=78.17 Aligned_cols=7 Identities=43% Similarity=0.292 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 001026 333 AFAKVQE 339 (1184)
Q Consensus 333 ~f~~~~~ 339 (1184)
.|++||+
T Consensus 131 F~k~V~~ 137 (569)
T KOG3671|consen 131 FRKKVQD 137 (569)
T ss_pred HHHHHHH
Confidence 3444444
No 26
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=97.49 E-value=0.0018 Score=64.09 Aligned_cols=128 Identities=18% Similarity=0.242 Sum_probs=83.2
Q ss_pred cCCCCCceeeeCcEEEecCCCCCCcchhHHhhccHHHHHHHHhhhCCCCcEEEEEeccCCcCcccccccccCCceEEecC
Q 001026 10 RKPPDGLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYP 89 (1184)
Q Consensus 10 ~~~~lDLtyIT~RIiams~gfPa~~~~e~~YRN~i~dV~~fL~~~H~~~~y~V~Nl~ee~~~~~~~~~~~~f~~~V~~~P 89 (1184)
|-.+..++|=.=|.++.+ =|++ .....+|+++ ++|+- --|...||-.|+... +.+-...|.||+
T Consensus 6 rPAPveIsy~~MrFLITh--nPtn----aTln~fieEL-----kKygv--ttvVRVCe~TYdt~~---lek~GI~Vldw~ 69 (173)
T KOG2836|consen 6 RPAPVEISYKNMRFLITH--NPTN----ATLNKFIEEL-----KKYGV--TTVVRVCEPTYDTTP---LEKEGITVLDWP 69 (173)
T ss_pred CCCCeeeeccceEEEEec--CCCc----hhHHHHHHHH-----HhcCC--eEEEEecccccCCch---hhhcCceEeecc
Confidence 444566777666777775 4542 2334455554 23443 578899999887532 456778999998
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHHHHHHHHhhCCCcHHHHHHHH
Q 001026 90 RHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMI 158 (1184)
Q Consensus 90 ~~~~~~p~p~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~~~~~~~~aL~~~ 158 (1184)
|++ |.+ |+-+.+-....-+..-+.+++.-.|+|||-+|.|| .-+++|--||-+|+- -++|++|+
T Consensus 70 f~d-g~p-pp~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgr-apvlvalalie~gmk--yedave~i 133 (173)
T KOG2836|consen 70 FDD-GAP-PPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGR-APVLVALALIEAGMK--YEDAVEMI 133 (173)
T ss_pred ccc-CCC-CchHHHHHHHHHHHHHHhhCCCCeEEEEeecccCc-chHHHHHHHHHcccc--HHHHHHHH
Confidence 864 333 33333333332233334468899999999999999 678888888888863 24688887
No 27
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=97.48 E-value=0.0003 Score=77.44 Aligned_cols=66 Identities=11% Similarity=0.169 Sum_probs=49.3
Q ss_pred CCCCCCCc-HHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHHHHHHHHhhC----CCcHHHHHHHH
Q 001026 92 YEGCPLLT-METVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQ----FTGEQKTLDMI 158 (1184)
Q Consensus 92 ~~~~p~p~-L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~~----~~~~~~aL~~~ 158 (1184)
|.++..|. .+.++.|++.++.+...+..+-++|||.+|.|| +|+++|++++...+ ..+..+++..+
T Consensus 138 W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gR-sg~~~a~~~~~~~~~~~~~~~~~~~v~~i 208 (231)
T cd00047 138 WPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGR-TGTFIAIDILLQRLEAEGVVDIFQTVKEL 208 (231)
T ss_pred CCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCc-cchHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 44444554 488999999999987645567899999999999 89999999877653 33445566554
No 28
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=97.34 E-value=0.00068 Score=76.03 Aligned_cols=66 Identities=9% Similarity=0.157 Sum_probs=49.2
Q ss_pred CCCCCCCC-cHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHHHHHHHHhhC----CCcHHHHHHHH
Q 001026 91 HYEGCPLL-TMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQ----FTGEQKTLDMI 158 (1184)
Q Consensus 91 ~~~~~p~p-~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~~----~~~~~~aL~~~ 158 (1184)
+|.++.+| ..+.+++|++.++.|... ..+-++|||.+|.|| ||+++|+++++..+ ..+..+++..+
T Consensus 165 ~W~d~~~P~~~~~~~~~i~~v~~~~~~-~~~pivVHC~~G~gR-sg~f~a~~~~~~~l~~~~~v~v~~~v~~l 235 (258)
T smart00194 165 NWPDHGVPESPKSILDLVRAVRKSQST-STGPIVVHCSAGVGR-TGTFIAIDILLQQLEAGKEVDIFEIVKEL 235 (258)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhhcc-CCCCEEEEeCCCCCc-cchhhHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34444466 678899999999998764 245799999999999 89999999887643 23445566554
No 29
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=97.03 E-value=0.0015 Score=68.59 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=55.1
Q ss_pred CCCceeeeCcEEEecCCCCCCcchhHHhhccHHHHHHHHhhhCCCCcEEEEEeccCCcCcccccccccCCceEEecCCCC
Q 001026 13 PDGLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHY 92 (1184)
Q Consensus 13 ~lDLtyIT~RIiams~gfPa~~~~e~~YRN~i~dV~~fL~~~H~~~~y~V~Nl~ee~~~~~~~~~~~~f~~~V~~~P~~~ 92 (1184)
++....|.+.||=- ++|.. .=..||++.+=. -|.||+.+....+........+.++.+++..-
T Consensus 4 P~nF~~V~~~vYRS--~~P~~------------~n~~fL~~L~LK---TII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~ 66 (164)
T PF03162_consen 4 PLNFGMVEPGVYRS--AQPTP------------ANFPFLERLGLK---TIINLRPEPPSQDFLEFAEENGIKLIHIPMSS 66 (164)
T ss_dssp -TT-EEEETTEEEE--SS--H------------HHHHHHHHHT-S---EEEE--SS---HHHHHHHHHTT-EEEE-----
T ss_pred CccccCCCCCccCC--CCCCh------------hhHHHHHHCCCc---eEEEecCCCCCHHHHHHHhhcCceEEEecccc
Confidence 34455566666555 35542 225688884432 58899988655443333345677788875532
Q ss_pred CC--CCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHHHHHHHHhh
Q 001026 93 EG--CPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1184)
Q Consensus 93 ~~--~p~p~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~ 146 (1184)
.. +-...-+.+.++++.| |+. .+.=|+|||+.|+.| ||+|+|||=.+.|
T Consensus 67 ~~~~~~~~~~~~v~~aL~~i---ld~-~n~PvLiHC~~G~~r-TG~vvg~lRk~Q~ 117 (164)
T PF03162_consen 67 SKDPWVPISEEQVAEALEII---LDP-RNYPVLIHCNHGKDR-TGLVVGCLRKLQG 117 (164)
T ss_dssp --GGG----HHHHHHHHHHH---H-G-GG-SEEEE-SSSSSH-HHHHHHHHHHHTT
T ss_pred ccCccccCCHHHHHHHHHHH---hCC-CCCCEEEEeCCCCcc-hhhHHHHHHHHcC
Confidence 21 1123455555555533 222 233599999999999 9999999975544
No 30
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=96.89 E-value=0.0015 Score=71.43 Aligned_cols=66 Identities=11% Similarity=0.122 Sum_probs=51.0
Q ss_pred CCCCCCCC-cHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHHHHHHHHhhCCC----cHHHHHHHH
Q 001026 91 HYEGCPLL-TMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFT----GEQKTLDMI 158 (1184)
Q Consensus 91 ~~~~~p~p-~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~~~~----~~~~aL~~~ 158 (1184)
+|.++..| ..+.++.|++.+..|. .+.++-++|||.+|.|| +|+++|+.+++..+.. +-.+++..+
T Consensus 142 ~W~~~~~P~~~~~~~~~~~~v~~~~-~~~~~pivVhc~~G~gR-sg~f~~~~~~~~~~~~~~~~~v~~~~~~l 212 (235)
T PF00102_consen 142 NWPDDGVPPSPESFLDFIRKVNKSK-DDPNGPIVVHCSDGVGR-SGTFCAIDILIEQLKKEGEVDVFEIVKKL 212 (235)
T ss_dssp SSSSSSSGSSSHHHHHHHHHHHHHH-STTSSEEEEESSSSSHH-HHHHHHHHHHHHHHHHHSEECHHHHHHHH
T ss_pred eccccccccccchhhhhhhhccccc-cCCccceEeeccccccc-ccccccchhhccccccccchhhHHHHHHH
Confidence 34444444 6899999999999999 66778999999999999 8999999998877543 344444444
No 31
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=96.80 E-value=0.0026 Score=74.43 Aligned_cols=120 Identities=12% Similarity=0.136 Sum_probs=81.3
Q ss_pred CCCCCcchhHHhhccHHHHHHHHhhhCCCCcEEE---EEec-cCCcCcccccccccCCceEEec-CCCCCCCCCCcHHHH
Q 001026 29 CFTTDILEEEEYKEYLGGIVGQLREYFPEASFMV---FNFR-EGEHQSQIGQVLSEYDMTVMDY-PRHYEGCPLLTMETV 103 (1184)
Q Consensus 29 gfPa~~~~e~~YRN~i~dV~~fL~~~H~~~~y~V---~Nl~-ee~~~~~~~~~~~~f~~~V~~~-P~~~~~~p~p~L~~l 103 (1184)
.|..... .+.+|-.-.+|..+|.++ +|+| .-|. --+||.. .+ -..++.+... -+.++|+ .|..+..
T Consensus 36 ~~~~k~~-~~~~~f~~~dl~~~l~~~----~~~vgl~iDltnt~ryy~~-~~--~~~~g~~Y~K~~c~g~~~-vp~~~~v 106 (393)
T KOG2386|consen 36 SYSTKTF-PGSQRFQPKDLFELLKEH----NYKVGLKIDLTNTLRYYDK-PE--LEERGVKYLKRNCPGRGV-VPRTELV 106 (393)
T ss_pred CCCcCCC-CCccccCHHHHHHHHHhc----CceEEEEEeccceeeeecc-cc--ccccceeEEEeccCCccc-CCCccch
Confidence 4655433 445588889999988773 3443 3332 1223311 11 0111111111 1112333 7899999
Q ss_pred HHHHHHHHHHHh--cCCCcEEEEEecCCCCCchHHHHHHHHHHhhCCCcHHHHHHHHh
Q 001026 104 HHFLRSSESWLS--LGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIY 159 (1184)
Q Consensus 104 ~~~c~~i~~WL~--~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~~~~~~~~aL~~~~ 159 (1184)
..|.+.++.+.. +++.-+|.|||..|+-| ||+|||+||+-.+. .+..+|+..|.
T Consensus 107 ~~fv~~v~~f~~~~~~~~~LI~vhcthG~Nr-tgyLI~~yL~~~~~-~s~~~aik~f~ 162 (393)
T KOG2386|consen 107 DKFVKLVKGFVDDTKLDDELIGVHCTHGLNR-TGYLICAYLADVGG-YSSSEAIKRFA 162 (393)
T ss_pred HHHHHHHHHHHhcccCCCCEEEEeCCCcccc-cceeeeeeeeeccC-ccHHHHHHHHH
Confidence 999999999999 78889999999999999 99999999999999 56677998885
No 32
>PLN02727 NAD kinase
Probab=96.77 E-value=0.0025 Score=80.77 Aligned_cols=94 Identities=15% Similarity=0.182 Sum_probs=62.4
Q ss_pred cHHHHHHHHhhhCCCCcEEEEEeccCCcCccc-----ccccccCCceEEecCCCCCCCCCCcHHHHHHHHHHHHHHHhcC
Q 001026 43 YLGGIVGQLREYFPEASFMVFNFREGEHQSQI-----GQVLSEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLG 117 (1184)
Q Consensus 43 ~i~dV~~fL~~~H~~~~y~V~Nl~ee~~~~~~-----~~~~~~f~~~V~~~P~~~~~~p~p~L~~l~~~c~~i~~WL~~d 117 (1184)
.-+++..+.+. + -=-|.||+.+...... .+.......+..++|+. +-..|+-+.+.+|.+.+++=+ ..
T Consensus 270 spe~la~LA~~---G-fKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs--~~~apt~EqVe~fa~~l~~sl-pk 342 (986)
T PLN02727 270 TEEGLKWLLEK---G-FKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVE--VRTAPSAEQVEKFASLVSDSS-KK 342 (986)
T ss_pred CHHHHHHHHHC---C-CeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecC--CCCCCCHHHHHHHHHHHHhhc-CC
Confidence 44555444332 3 1349999876543211 11123456788899874 334678899998888774411 23
Q ss_pred CCcEEEEEecCCCCCchHHHHHHHHHHhhC
Q 001026 118 HQNVLLMHCERGGWPVLAFMLAALLIYRKQ 147 (1184)
Q Consensus 118 ~~NVvvvHCk~Gkgr~tg~mia~yLly~~~ 147 (1184)
=|+|||+.|.+| +|+|+||||.|.-.
T Consensus 343 ---PVLvHCKSGarR-AGamvA~yl~~~~~ 368 (986)
T PLN02727 343 ---PIYLHSKEGVWR-TSAMVSRWKQYMTR 368 (986)
T ss_pred ---CEEEECCCCCch-HHHHHHHHHHHHcc
Confidence 499999999999 99999999999643
No 33
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.52 E-value=0.02 Score=58.12 Aligned_cols=115 Identities=13% Similarity=0.124 Sum_probs=68.7
Q ss_pred CceeeeCcEEEecCCCCCCcchhHHhhccHHHHHHHHhhhCCCCcEEEEEeccCCcCccccc------ccccCCceEEec
Q 001026 15 GLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQ------VLSEYDMTVMDY 88 (1184)
Q Consensus 15 DLtyIT~RIiams~gfPa~~~~e~~YRN~i~dV~~fL~~~H~~~~y~V~Nl~ee~~~~~~~~------~~~~f~~~V~~~ 88 (1184)
|+..|++++++.+ =+++ +|+ ..|.+. += -.|+||+...-.....+ .....+..+.++
T Consensus 1 ~~~~i~~~~~~s~--qlt~-----------~d~-~~L~~~-Gi--ktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~i 63 (135)
T TIGR01244 1 DIRKLTEHLYVSP--QLTK-----------ADA-AQAAQL-GF--KTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQ 63 (135)
T ss_pred CceEcCCCeeEcC--CCCH-----------HHH-HHHHHC-CC--cEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEe
Confidence 4567888988773 2321 222 335443 32 47999984321111110 112356778888
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHHHHHHHHhhCCCcHHHHHHHH
Q 001026 89 PRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMI 158 (1184)
Q Consensus 89 P~~~~~~p~p~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~~~~~~~~aL~~~ 158 (1184)
|+...+ ..-+.+..|.+-+++ . ..=|++||+.|+ | +|++.+-++.+.| ...+++++..
T Consensus 64 Pv~~~~---~~~~~v~~f~~~~~~---~--~~pvL~HC~sG~-R-t~~l~al~~~~~g--~~~~~i~~~~ 121 (135)
T TIGR01244 64 PVTAGD---ITPDDVETFRAAIGA---A--EGPVLAYCRSGT-R-SSLLWGFRQAAEG--VPVEEIVRRA 121 (135)
T ss_pred ecCCCC---CCHHHHHHHHHHHHh---C--CCCEEEEcCCCh-H-HHHHHHHHHHHcC--CCHHHHHHHH
Confidence 765432 466777777766652 2 234999999999 8 7888877777755 3566677654
No 34
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=96.39 E-value=0.0053 Score=71.08 Aligned_cols=60 Identities=8% Similarity=0.109 Sum_probs=41.2
Q ss_pred eEEecCCCCCCCC---CC-cHHHHHHHHHHHHHHHhcCCC---------cEEEEEecCCCCCchHHHHHHHHHHhh
Q 001026 84 TVMDYPRHYEGCP---LL-TMETVHHFLRSSESWLSLGHQ---------NVLLMHCERGGWPVLAFMLAALLIYRK 146 (1184)
Q Consensus 84 ~V~~~P~~~~~~p---~p-~L~~l~~~c~~i~~WL~~d~~---------NVvvvHCk~Gkgr~tg~mia~yLly~~ 146 (1184)
.|.+| +|.+|+ .| ....+++|++.++.|-..-.+ .=+||||.+|-|| ||+.+|.-++...
T Consensus 183 ~V~h~--~y~~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGR-tGtfcaidi~i~~ 255 (312)
T PHA02747 183 KISHF--QCSEWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGK-TGIFCAVDICLNQ 255 (312)
T ss_pred EEEEE--EECCCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcc-hhHHHHHHHHHHH
Confidence 46666 555555 45 466778888877776432111 2499999999999 8999888765543
No 35
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=96.39 E-value=0.0032 Score=65.04 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=33.3
Q ss_pred cCCceEEecCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHHHHHHH
Q 001026 80 EYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLI 143 (1184)
Q Consensus 80 ~f~~~V~~~P~~~~~~p~p~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLl 143 (1184)
.++......|.-++.+ |.-+.+-.|+.-+.++ ..+-.+++||++|+||+|-+|+.+.|+
T Consensus 90 ~~g~~Y~Ripitd~~~--P~~~~iD~fi~~v~~~---p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQA--PDPEDIDAFINFVKSL---PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HTT-EEEEEEE-TTS-----HHHHHHHHHHHHTS----TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCC--CCHHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4555566667665554 4545555555544443 335689999999999966666655554
No 36
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=96.24 E-value=0.0072 Score=70.33 Aligned_cols=59 Identities=10% Similarity=0.146 Sum_probs=41.2
Q ss_pred eEEecCCCCCCCC---CC-cHHHHHHHHHHHHHHHhc-------CC--CcEEEEEecCCCCCchHHHHHHHHHHh
Q 001026 84 TVMDYPRHYEGCP---LL-TMETVHHFLRSSESWLSL-------GH--QNVLLMHCERGGWPVLAFMLAALLIYR 145 (1184)
Q Consensus 84 ~V~~~P~~~~~~p---~p-~L~~l~~~c~~i~~WL~~-------d~--~NVvvvHCk~Gkgr~tg~mia~yLly~ 145 (1184)
.|.+| +|.+|+ .| ....+++|++.|..|-.. +. ..=+||||.+|.|| ||+.+|...+..
T Consensus 201 ~V~h~--~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGR-TGtfcaid~~l~ 272 (323)
T PHA02746 201 EIHHF--WFPDWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGR-AGTFCAIDNALE 272 (323)
T ss_pred EEEEE--EECCCCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCc-chhHHHHHHHHH
Confidence 46665 444444 55 467889999999887432 11 24599999999999 899988766544
No 37
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=96.16 E-value=0.0064 Score=63.64 Aligned_cols=37 Identities=22% Similarity=0.172 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCcEEEEEecCCCCCchHHHHHHHHHHhhC
Q 001026 109 SSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQ 147 (1184)
Q Consensus 109 ~i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~~ 147 (1184)
.+-.+|...+ +-+++||.+||-| ||+++|-+|.-.|.
T Consensus 115 ~~~~~l~~~~-~p~l~HC~aGKDR-TG~~~alll~~lGV 151 (164)
T PF13350_consen 115 KIFELLADAP-GPVLFHCTAGKDR-TGVVAALLLSLLGV 151 (164)
T ss_dssp HHHHHHH-TT---EEEE-SSSSSH-HHHHHHHHHHHTT-
T ss_pred HHHHHhccCC-CcEEEECCCCCcc-HHHHHHHHHHHcCC
Confidence 3444555555 7999999999999 99999999888775
No 38
>PHA02738 hypothetical protein; Provisional
Probab=96.11 E-value=0.01 Score=68.94 Aligned_cols=60 Identities=15% Similarity=0.283 Sum_probs=40.9
Q ss_pred eEEecCCCCCCCC---CC-cHHHHHHHHHHHHHHHhc--------CC----CcEEEEEecCCCCCchHHHHHHHHHHhh
Q 001026 84 TVMDYPRHYEGCP---LL-TMETVHHFLRSSESWLSL--------GH----QNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1184)
Q Consensus 84 ~V~~~P~~~~~~p---~p-~L~~l~~~c~~i~~WL~~--------d~----~NVvvvHCk~Gkgr~tg~mia~yLly~~ 146 (1184)
.|.+| +|.+|+ .| .-..+++|++.|..|-.. +. ..=+||||.+|.|| ||+.+|.-.+...
T Consensus 178 ~V~h~--~y~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGR-tGtFcaidi~i~~ 253 (320)
T PHA02738 178 TVTHF--NFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGR-TPCYCVVDISISR 253 (320)
T ss_pred EEEEE--EECCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCCh-hhhhhHHHHHHHH
Confidence 46665 555554 44 456788888888876321 11 13599999999999 8998877766554
No 39
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=96.11 E-value=0.012 Score=67.83 Aligned_cols=60 Identities=12% Similarity=0.227 Sum_probs=40.9
Q ss_pred eEEecCCCCCCCC---CC-cHHHHHHHHHHHHHHHh-------cCCCcEEEEEecCCCCCchHHHHHHHHHHhh
Q 001026 84 TVMDYPRHYEGCP---LL-TMETVHHFLRSSESWLS-------LGHQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1184)
Q Consensus 84 ~V~~~P~~~~~~p---~p-~L~~l~~~c~~i~~WL~-------~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~ 146 (1184)
.|.+| +|.+|| .| .-..++.|++.+.++.. .+...=+||||.+|-|| ||+.+|.-.+...
T Consensus 177 ~V~Hf--qyt~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGR-TGtFcaiDi~l~~ 247 (298)
T PHA02740 177 KISHF--QYTAWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISS-SAVFCVFDICATE 247 (298)
T ss_pred EEEEE--eecCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCch-hHHHHHHHHHHHH
Confidence 46666 555554 44 56678888877766532 12223589999999999 8999887766544
No 40
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=96.03 E-value=0.014 Score=67.26 Aligned_cols=62 Identities=13% Similarity=0.119 Sum_probs=41.3
Q ss_pred eEEecC-CCCCCCCCC-cHHHHHHHHHHHHHHHhcC----------CCcEEEEEecCCCCCchHHHHHHHHHHhh
Q 001026 84 TVMDYP-RHYEGCPLL-TMETVHHFLRSSESWLSLG----------HQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1184)
Q Consensus 84 ~V~~~P-~~~~~~p~p-~L~~l~~~c~~i~~WL~~d----------~~NVvvvHCk~Gkgr~tg~mia~yLly~~ 146 (1184)
.|.+|= .+|.++-+| .-..+++|++.+..|-... ...=+||||.+|-|| ||+++|...+...
T Consensus 182 ~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGR-TGtF~aid~~i~~ 255 (303)
T PHA02742 182 DIKHFAYEDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDR-AGAFCAIDICISK 255 (303)
T ss_pred EEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCch-hHHHHHHHHHHHH
Confidence 355540 133343355 4678889999998864321 123499999999999 8999888766544
No 41
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=96.01 E-value=0.012 Score=75.01 Aligned_cols=57 Identities=19% Similarity=0.338 Sum_probs=38.5
Q ss_pred ceEEecCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHHHHHHHH
Q 001026 83 MTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIY 144 (1184)
Q Consensus 83 ~~V~~~P~~~~~~p~p~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly 144 (1184)
.+..+||. |||| =..+..+.|+..|.+ +..+.+-=|||||.||.|| ||++|++=++.
T Consensus 1031 LQYtaWPD--Hg~P-~D~~~FL~Fleevrs-vR~~t~pPilvHCSAGiGR-TGVlIl~e~~l 1087 (1144)
T KOG0792|consen 1031 LQYTAWPD--HGVP-DDPNDFLDFLEEVRS-VRRGTNPPILVHCSAGIGR-TGVLILMETAL 1087 (1144)
T ss_pred eeeccccc--CCCC-CChHHHHHHHHHHHH-HhccCCCCeEEEccCCCCc-ceehHHHHHHH
Confidence 34444542 3444 256778888888877 3444333699999999999 89988875443
No 42
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=95.79 E-value=0.0067 Score=66.76 Aligned_cols=52 Identities=12% Similarity=0.230 Sum_probs=35.9
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHhcC-CCcEEEEEecCCCCCchHHHHHHHHHHhh
Q 001026 91 HYEGCPLLTMETVHHFLRSSESWLSLG-HQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1184)
Q Consensus 91 ~~~~~p~p~L~~l~~~c~~i~~WL~~d-~~NVvvvHCk~Gkgr~tg~mia~yLly~~ 146 (1184)
.|-|+..|.+..|+++. ++..... ..+.++|||.||-|| |||.||--.|.+-
T Consensus 192 nW~D~~~p~i~sl~~~~---~sl~~sp~~t~piiVHCSAGvGR-TGTFIalD~ll~~ 244 (302)
T COG5599 192 NWVDFNVPDIRSLTEVI---HSLNDSPVRTGPIIVHCSAGVGR-TGTFIALDILLRM 244 (302)
T ss_pred CccccCCcCHHHHHHHH---HHhhcCcCCCCCEEEEeccCCCC-cceeeeHHHHHhc
Confidence 45666677555554444 4444342 567899999999999 9999988765543
No 43
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=95.54 E-value=0.026 Score=64.62 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=35.0
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCchHHHHHHHHHHhhCCCcHHHHHHHHh
Q 001026 110 SESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIY 159 (1184)
Q Consensus 110 i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~~~~~~~~aL~~~~ 159 (1184)
.-.|... .+-.|+|||.+|..| +++++.|||++...+.- ++|++++.
T Consensus 147 fI~~a~~-~~~~vlVHC~~GvSR-Sat~viAYlM~~~~~~l-~~A~~~vk 193 (285)
T KOG1716|consen 147 FIEKARE-KGGKVLVHCQAGVSR-SATLVIAYLMKYEGLSL-EDAYELVK 193 (285)
T ss_pred HHHHHHh-CCCeEEEEcCCccch-hHHHHHHHHHHHcCCCH-HHHHHHHH
Confidence 3334433 345899999999999 78888899888776655 45888874
No 44
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=94.98 E-value=0.099 Score=57.15 Aligned_cols=95 Identities=14% Similarity=0.133 Sum_probs=57.1
Q ss_pred HHHHhhhCCCCcEEEEEeccCCcCcccccccccCCceEEecCCCCCCCC----CCcHHHHHHHHHHHHHHHhcCCCcEEE
Q 001026 48 VGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCP----LLTMETVHHFLRSSESWLSLGHQNVLL 123 (1184)
Q Consensus 48 ~~fL~~~H~~~~y~V~Nl~ee~~~~~~~~~~~~f~~~V~~~P~~~~~~p----~p~L~~l~~~c~~i~~WL~~d~~NVvv 123 (1184)
..||++-|- .-|.-||.|.|-......+..-+..+.++ .-+|.. -|.-.+..+.++.+-+.|-.-.+.=++
T Consensus 78 fsFL~~L~L---ksIisL~pE~yp~~nl~f~~~~~Ik~~~i--~ie~~k~~~k~P~~~~~~~~i~~~l~~lld~~N~P~L 152 (249)
T KOG1572|consen 78 FSFLKTLHL---KSIISLCPEPYPEENLNFLESNGIKLYQI--GIEGEKDNKKEPFVNIPDHSIRKALKVLLDKRNYPIL 152 (249)
T ss_pred hHHHHHhhh---heEEEecCCCCChHHHHHHHhcCceEEEE--ecccccccccCCCCCChHHHHHHHHHHHhcccCCceE
Confidence 567777553 34555777654322212222334444444 223333 454555556666555555444556799
Q ss_pred EEecCCCCCchHHHHHHHHHHhhCC
Q 001026 124 MHCERGGWPVLAFMLAALLIYRKQF 148 (1184)
Q Consensus 124 vHCk~Gkgr~tg~mia~yLly~~~~ 148 (1184)
|||+.||-| ||++|+|+=...+++
T Consensus 153 ihc~rGkhR-tg~lVgclRklq~W~ 176 (249)
T KOG1572|consen 153 IHCKRGKHR-TGCLVGCLRKLQNWS 176 (249)
T ss_pred EecCCCCcc-hhhhHHHHHHHhccc
Confidence 999999999 999999997666654
No 45
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=94.92 E-value=0.023 Score=66.25 Aligned_cols=72 Identities=19% Similarity=0.326 Sum_probs=45.0
Q ss_pred CCCCCCcHHHHHHHHHHHHHH----HhcCCCcEEEEEecCCCCCchHHHHHHHHHHhhC------C-CcHHHHHHHHh--
Q 001026 93 EGCPLLTMETVHHFLRSSESW----LSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQ------F-TGEQKTLDMIY-- 159 (1184)
Q Consensus 93 ~~~p~p~L~~l~~~c~~i~~W----L~~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~~------~-~~~~~aL~~~~-- 159 (1184)
||+|+=+ .-++.|+.+++.- ..++ -+||||.||-|| |||+|..=+|.-.+ | -+.++++.|+-
T Consensus 425 HGvP~dP-g~vLnFLe~V~~rq~~l~~Ag---pIvVHCSAGIGr-TGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsq 499 (600)
T KOG0790|consen 425 HGVPSDP-GGVLNFLEEVNHRQESLMDAG---PIVVHCSAGIGR-TGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQ 499 (600)
T ss_pred CCCcCCc-cHHHHHHHHhhhhhccccccC---cEEEEccCCcCC-cceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHH
Confidence 5766433 4466788877653 2234 599999999999 89876655444322 1 34567777762
Q ss_pred ------hhchhhhhcc
Q 001026 160 ------KQAPRELLQL 169 (1184)
Q Consensus 160 ------~pSq~ryl~y 169 (1184)
..+|-+||++
T Consensus 500 RSGmVQTEaQYkFiY~ 515 (600)
T KOG0790|consen 500 RSGMVQTEAQYKFIYV 515 (600)
T ss_pred hcchhhhHHhHHHHHH
Confidence 1356666643
No 46
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=94.62 E-value=0.087 Score=60.83 Aligned_cols=53 Identities=17% Similarity=0.272 Sum_probs=42.4
Q ss_pred CCCCCCCC-cHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHHHHH-HHHh
Q 001026 91 HYEGCPLL-TMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAAL-LIYR 145 (1184)
Q Consensus 91 ~~~~~p~p-~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~y-Lly~ 145 (1184)
.|.+|-+| +.+.|+.|.+....|+... .-..+|||.+|-|| |||.||-- |++.
T Consensus 259 ~wPd~gvp~~~~sl~~f~~~~r~~~~~~-~~p~iVhCSAGVgR-TGTFiald~LLqq 313 (374)
T KOG0791|consen 259 AWPDFGVPSSTESLLQFVRMVRQSLDTS-KGPTIVHCSAGVGR-TGTFIALDRLLQQ 313 (374)
T ss_pred eccccCCCCCchhHHHHHHHHHhhcccC-CCceeEEeeccccc-ccchHhHHHHHHH
Confidence 34444444 6788999999999999987 56799999999999 89999887 4443
No 47
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.52 E-value=0.38 Score=61.83 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHhhhhcCCCC
Q 001026 987 KLKRIMQTILSLGNALNHGTA 1007 (1184)
Q Consensus 987 ~L~~lL~~IL~iGN~LN~gt~ 1007 (1184)
..+.+-.+|-+|+|||+..+.
T Consensus 1469 s~~el~~Li~~v~~Flt~~~a 1489 (1758)
T KOG0994|consen 1469 SNRELRNLIQQVRDFLTQPDA 1489 (1758)
T ss_pred HHHHHHHHHHHHHHHhcCCCC
Confidence 345555677889999998753
No 48
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=94.37 E-value=0.082 Score=59.37 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=30.2
Q ss_pred HHHhcCCCcEEEEEecCCCCCchHHHHHHHHHHhhCCCcH
Q 001026 112 SWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGE 151 (1184)
Q Consensus 112 ~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~~~~~~ 151 (1184)
.-+...++-=|+|||++||-| ||+++|||+.+.+.....
T Consensus 129 ~l~~~~e~~PvL~HC~~GkdR-TGl~~al~r~~~~~~~~~ 167 (249)
T COG2365 129 QLLADAENGPVLIHCTAGKDR-TGLVAALYRKLVGGSDET 167 (249)
T ss_pred HHHhhcccCCEEEecCCCCcc-hHHHHHHHHHHhCCchhH
Confidence 333333345699999999999 999999999999875543
No 49
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=93.36 E-value=0.19 Score=49.37 Aligned_cols=91 Identities=22% Similarity=0.293 Sum_probs=46.8
Q ss_pred CceeeeCcEEEecCCCCCCcchhHHhhccHHHHHHHHhhhCCCCcE-EEEEeccCCc-Cc-----ccccccccCCceEEe
Q 001026 15 GLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASF-MVFNFREGEH-QS-----QIGQVLSEYDMTVMD 87 (1184)
Q Consensus 15 DLtyIT~RIiams~gfPa~~~~e~~YRN~i~dV~~fL~~~H~~~~y-~V~Nl~ee~~-~~-----~~~~~~~~f~~~V~~ 87 (1184)
|+..|++++.+.+ -++. +++. .|.+ .+ | -|.|++...- .. .+.........+..+
T Consensus 1 di~~i~~~~~vs~--Q~~~-----------~d~~-~la~--~G--fktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~ 62 (110)
T PF04273_consen 1 DIRQISDDLSVSG--QPSP-----------EDLA-QLAA--QG--FKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVH 62 (110)
T ss_dssp --EEEETTEEEEC--S--H-----------HHHH-HHHH--CT----EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE
T ss_pred CCEecCCCeEECC--CCCH-----------HHHH-HHHH--CC--CcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEE
Confidence 7889999999884 4431 2222 2222 12 4 4889973311 11 122334568889999
Q ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCC
Q 001026 88 YPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWP 132 (1184)
Q Consensus 88 ~P~~~~~~p~p~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr 132 (1184)
.|+.+. .++.+.+..|.+.+++ ..++ |++||+.|. |
T Consensus 63 iPv~~~---~~~~~~v~~f~~~l~~--~~~P---vl~hC~sG~-R 98 (110)
T PF04273_consen 63 IPVDGG---AITEEDVEAFADALES--LPKP---VLAHCRSGT-R 98 (110)
T ss_dssp ----TT---T--HHHHHHHHHHHHT--TTTS---EEEE-SCSH-H
T ss_pred eecCCC---CCCHHHHHHHHHHHHh--CCCC---EEEECCCCh-h
Confidence 999765 3688999988877666 2234 999998766 5
No 50
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=93.26 E-value=0.27 Score=51.12 Aligned_cols=112 Identities=15% Similarity=0.129 Sum_probs=59.3
Q ss_pred hhhccCCCCCceeeeCcEEEecCCCCCCcchhHHhhccHHHHHHHHhhhCCCCcEEEEEeccCCcCcccccccccCCceE
Q 001026 6 KFFYRKPPDGLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTV 85 (1184)
Q Consensus 6 r~~~~~~~lDLtyIT~RIiams~gfPa~~~~e~~YRN~i~dV~~fL~~~H~~~~y~V~Nl~ee~~~~~~~~~~~~f~~~V 85 (1184)
+++....=-+|+.||+-+|... |--+ +.+.|-++++- -+|.|.+-|.-...+.+ .......+
T Consensus 7 ~~~~~~~~~~~SqIt~sLfl~~-GvaA--------------~~k~~l~~~~I--t~IiNat~E~pn~~l~~-~qy~kv~~ 68 (198)
T KOG1718|consen 7 TLEVQPSIGGMSQITPSLFLSN-GVAA--------------NDKLLLKKRKI--TCIINATTEVPNTSLPD-IQYMKVPL 68 (198)
T ss_pred ccccCCCccchhhcCcceeEec-cccc--------------cCHHHHHhcCc--eEEEEcccCCCCccCCC-ceeEEEEc
Confidence 3344444457999999988773 3222 13344456666 68999987765432222 11222222
Q ss_pred EecCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHHHHHHHH
Q 001026 86 MDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIY 144 (1184)
Q Consensus 86 ~~~P~~~~~~p~p~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly 144 (1184)
.|-|-.+- ..-|+.+-..+++++ ..+ --.+|||.||-.| +|.++-+||+-
T Consensus 69 ~D~p~~~l---~~hfD~vAD~I~~v~---~~g--G~TLvHC~AGVSR-SAsLClAYLmK 118 (198)
T KOG1718|consen 69 EDTPQARL---YDHFDPVADKIHSVI---MRG--GKTLVHCVAGVSR-SASLCLAYLMK 118 (198)
T ss_pred ccCCcchh---hhhhhHHHHHHHHHH---hcC--CcEEEEEccccch-hHHHHHHHHHH
Confidence 32221100 112233332222222 222 2589999999999 67777777665
No 51
>PRK11637 AmiB activator; Provisional
Probab=92.57 E-value=1.2 Score=53.91 Aligned_cols=34 Identities=12% Similarity=0.039 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001026 1079 KLLKEFLSYAEGEVRSLALLYSSVGRNADALAQY 1112 (1184)
Q Consensus 1079 ~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~y 1112 (1184)
+.++.-++..+.+|..+++.+.+.++.+.+.+.+
T Consensus 99 ~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra 132 (428)
T PRK11637 99 NQLNKQIDELNASIAKLEQQQAAQERLLAAQLDA 132 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555444433
No 52
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=92.38 E-value=7.6 Score=46.54 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1117 PARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFE 1150 (1184)
Q Consensus 1117 ~~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~e 1150 (1184)
.++++++++...|.++.+.-|..|+-.....+-|
T Consensus 543 SAkVDf~qL~DNL~qlErrCKaSWe~L~~Iakhe 576 (817)
T KOG1925|consen 543 SAKVDFEQLTDNLGQLERRCKASWESLRSIAKHE 576 (817)
T ss_pred hhhccHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Confidence 3466777777777777777777776655444333
No 53
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=92.20 E-value=0.2 Score=65.00 Aligned_cols=60 Identities=17% Similarity=0.401 Sum_probs=41.9
Q ss_pred EEecCCCCCCCC-----CCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHHHHHHHHhhC
Q 001026 85 VMDYPRHYEGCP-----LLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQ 147 (1184)
Q Consensus 85 V~~~P~~~~~~p-----~p~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~~ 147 (1184)
|..| +|.||+ +..-..|..+......|=+...+.=.+|||.+|.|| +|+.||+-++...+
T Consensus 981 v~qf--q~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~r-sg~f~ai~~l~e~~ 1045 (1087)
T KOG4228|consen 981 VRQF--QFTGWPEYGKPPQSKGPISKIPSVASKWQQLGADGPIIVHCLNGVGR-TGTFCAISILLERM 1045 (1087)
T ss_pred EEEE--EecCCcccCcCCCCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCcc-eeehHHHHHHHHHH
Confidence 4444 667776 233445555666666776666677799999999999 79888877666543
No 54
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=92.19 E-value=0.34 Score=53.63 Aligned_cols=54 Identities=17% Similarity=0.269 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhc--CCCcEEEEEecCCCCCchHHHHHHHHHHhhCCCcHHHHHHHHh
Q 001026 104 HHFLRSSESWLSL--GHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIY 159 (1184)
Q Consensus 104 ~~~c~~i~~WL~~--d~~NVvvvHCk~Gkgr~tg~mia~yLly~~~~~~~~~aL~~~~ 159 (1184)
-.|.-...+|+.. .++--|+|||.+|-.| ..|+..+|||-.-.+ +-.+|.|++.
T Consensus 234 s~ffpEAIsfIdeArsk~cgvLVHClaGISR-SvTvtvaYLMqkl~l-slndAyd~Vk 289 (343)
T KOG1717|consen 234 SQFFPEAISFIDEARSKNCGVLVHCLAGISR-SVTVTVAYLMQKLNL-SLNDAYDFVK 289 (343)
T ss_pred hhhhHHHHHHHHHhhccCCcEEEeeeccccc-hhHHHHHHHHHHhcc-chhhHHHHHH
Confidence 3344444444443 3555799999999999 799999999986554 4456888874
No 55
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=91.85 E-value=12 Score=47.40 Aligned_cols=12 Identities=17% Similarity=0.515 Sum_probs=8.2
Q ss_pred CCcchHHHHHHH
Q 001026 1029 NNKMTLMHYLCK 1040 (1184)
Q Consensus 1029 d~k~TLLhflvk 1040 (1184)
..+.+-|.|+.+
T Consensus 524 e~klatM~~m~n 535 (830)
T KOG1923|consen 524 EEKLATMEFMGN 535 (830)
T ss_pred HHHHHHHHHHHh
Confidence 456777777777
No 56
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=91.53 E-value=0.24 Score=50.70 Aligned_cols=66 Identities=11% Similarity=0.092 Sum_probs=40.7
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHhcC-CCcEEEEEecCCCCC---chHHHHHHHHHHhhCCCcHHHHHHHHh
Q 001026 93 EGCPLLTMETVHHFLRSSESWLSLG-HQNVLLMHCERGGWP---VLAFMLAALLIYRKQFTGEQKTLDMIY 159 (1184)
Q Consensus 93 ~~~p~p~L~~l~~~c~~i~~WL~~d-~~NVvvvHCk~Gkgr---~tg~mia~yLly~~~~~~~~~aL~~~~ 159 (1184)
.|+-++.|.+|+.||..+++-|+.. .++-.||||.....+ =.+++||||++....+ ++++|++.+.
T Consensus 39 ~DFGPlnL~~lyrfc~~l~~~L~~~~~~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~-spe~A~~~l~ 108 (141)
T PF14671_consen 39 ADFGPLNLAQLYRFCCKLNKKLKSPELKKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGM-SPEEAYKPLA 108 (141)
T ss_dssp S------HHHHHHHHHHHHHHHH-GGGTTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS----HHHHHHHHT
T ss_pred CcCCCccHHHHHHHHHHHHHHHcCHHhcCCeEEEECCCChhHHHHHHHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 3444789999999999999999883 336677777654221 1468999998886554 4566888764
No 57
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=91.33 E-value=2.7 Score=54.15 Aligned_cols=13 Identities=31% Similarity=0.874 Sum_probs=11.1
Q ss_pred cCCcchHHHHHHH
Q 001026 1028 RNNKMTLMHYLCK 1040 (1184)
Q Consensus 1028 ~d~k~TLLhflvk 1040 (1184)
..+...+||||++
T Consensus 712 ~~~~~~vl~~Lar 724 (1018)
T KOG2002|consen 712 KKNRSEVLHYLAR 724 (1018)
T ss_pred ccCCHHHHHHHHH
Confidence 3667899999999
No 58
>PRK11637 AmiB activator; Provisional
Probab=91.31 E-value=3.2 Score=50.39 Aligned_cols=26 Identities=12% Similarity=-0.010 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1078 CKLLKEFLSYAEGEVRSLALLYSSVG 1103 (1184)
Q Consensus 1078 ~~~m~~Fl~~a~~~l~~L~~~~~~~~ 1103 (1184)
.+.++.-+..++.+++.+++.+.+..
T Consensus 105 i~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 105 IDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666667777766666666443
No 59
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=91.17 E-value=0.32 Score=58.31 Aligned_cols=59 Identities=24% Similarity=0.365 Sum_probs=35.2
Q ss_pred eEEecCCCCCCCC---CCc-HHHHHHHHHHHHHHHhcCC-CcEEEEEecCCCCCchHHHHHHHHHHhhC
Q 001026 84 TVMDYPRHYEGCP---LLT-METVHHFLRSSESWLSLGH-QNVLLMHCERGGWPVLAFMLAALLIYRKQ 147 (1184)
Q Consensus 84 ~V~~~P~~~~~~p---~p~-L~~l~~~c~~i~~WL~~d~-~NVvvvHCk~Gkgr~tg~mia~yLly~~~ 147 (1184)
.|.+| +|.+|+ +|. ...++.+++. .-+...+ ..=++|||.+|.|| ||++++...+...+
T Consensus 263 ~v~~~--~~~~WPd~~~p~~~~~~l~~~~~--~~~~~~~~~~P~vVhcsaG~gR-tgt~v~~~~~~~~~ 326 (415)
T KOG0789|consen 263 SVVHY--HYINWPDHGAPDSVKSILPLLRQ--SVLELRPKQEPIEVHCSAGAGR-AGTLVLIEHALIEL 326 (415)
T ss_pred eEEEE--eeCCCccccCCcchHHHHHHHHh--hhhhhcCCCCCeEEECCCCCCc-cchHHHHHHHHHHH
Confidence 45555 555553 443 3444444443 2233332 34599999999999 89999866554443
No 60
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=90.31 E-value=9.5 Score=39.08 Aligned_cols=62 Identities=6% Similarity=0.105 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1046 LAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNAD 1107 (1184)
Q Consensus 1046 L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~ 1107 (1184)
+..+|..+...+..+.+......+.....+...+.|...++.+......+...+++++....
T Consensus 11 I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~ 72 (151)
T cd00179 11 IRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNE 72 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433333332222123456778888888888888888888877776544
No 61
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.31 E-value=6.5 Score=39.38 Aligned_cols=54 Identities=15% Similarity=0.219 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 001026 1086 SYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHE 1141 (1184)
Q Consensus 1086 ~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~e 1141 (1184)
.....++..|+..+.+++..|..++..|||.. ...+++-..|.+.-.+|+.-++
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~LellGEK~--E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLLELLGEKS--EEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 55667888999999999999999999999953 2345555555555555555443
No 62
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=89.39 E-value=0.29 Score=60.04 Aligned_cols=53 Identities=11% Similarity=0.241 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHHHHHHHHhhCCCcHHH
Q 001026 99 TMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQK 153 (1184)
Q Consensus 99 ~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~~~~~~~~ 153 (1184)
+-.-|++|=+.+.+-+.-- .--++|||.+|.|| |||.|..=|+..++..|+++
T Consensus 908 sarslLdFRRKVNK~YRGR-ScpIiVH~sdGaGR-TG~YiliDmvl~Rm~kGake 960 (1004)
T KOG0793|consen 908 SARSLLDFRRKVNKCYRGR-SCPIIVHCSDGAGR-TGTYILIDMVLNRMAKGAKE 960 (1004)
T ss_pred chHHHHHHHHHhhhhccCC-CCceEEEccCCCCc-cceeeeHHHHHHHHhccchh
Confidence 5677899999999988643 56799999999999 99999988888888777664
No 63
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=88.44 E-value=8.7 Score=42.44 Aligned_cols=66 Identities=17% Similarity=0.075 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-CCCHH----HHHHHHHHHHHHHHHHHHHHH
Q 001026 1079 KLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPA-RCPFE----QVVSTLLNFVKMFVLAHEENC 1144 (1184)
Q Consensus 1079 ~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~-~~~~e----~ff~~l~~F~~~fk~a~ee~~ 1144 (1184)
+++..-..+....+..|+..+..+....+.+.+|.-|-.. ...+| .-.-.+.+|-..+..|++.|.
T Consensus 80 ek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnA 150 (333)
T KOG1853|consen 80 EKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNA 150 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 3444444444555566666666666666666666644111 11111 112245556566666655554
No 64
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=87.86 E-value=37 Score=38.63 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=38.6
Q ss_pred HHcchhHHHHHHHHHHHhhhhcCCCCC-cceeeeeccchhchhccccc--------CCcchHHHHHHH
Q 001026 982 VRNSIKLKRIMQTILSLGNALNHGTAR-GSAVGFRLDSLLKLTDTRAR--------NNKMTLMHYLCK 1040 (1184)
Q Consensus 982 L~~S~~L~~lL~~IL~iGN~LN~gt~r-G~A~GFkL~SL~KL~dtKs~--------d~k~TLLhflvk 1040 (1184)
-.+.-..+.+|++.-.+-+.++..... ....+|+++.=.|+.|+|.. +.+.+|.+.|.+
T Consensus 75 ~ADGyAVkELLKia~lLy~A~~~~~~~e~~~~~~~~~l~~k~~dlk~~R~Laseit~~GA~LydlL~k 142 (267)
T PF10234_consen 75 QADGYAVKELLKIASLLYSAMKSAPSDEEDDSLFKFDLSSKIQDLKAARQLASEITQRGASLYDLLGK 142 (267)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhCCCccccccchhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344456778888877777777776422 12245666666778888773 566777777776
No 65
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=87.66 E-value=8.8 Score=42.94 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=10.7
Q ss_pred HcchhHHHHHHHHHHHhhhhcCC
Q 001026 983 RNSIKLKRIMQTILSLGNALNHG 1005 (1184)
Q Consensus 983 ~~S~~L~~lL~~IL~iGN~LN~g 1005 (1184)
..+.-|+.+|..- .+-+|+-.+
T Consensus 5 s~~~~f~~FLts~-dw~a~~kq~ 26 (240)
T cd07667 5 SFNEHFNVFLTAK-DLNAYKKQG 26 (240)
T ss_pred ccChHHHHHHcch-hHHHHhhcc
Confidence 3455555555544 444444443
No 66
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.66 E-value=7.3 Score=47.19 Aligned_cols=12 Identities=17% Similarity=0.415 Sum_probs=7.8
Q ss_pred CCceeEEEEEec
Q 001026 190 GGCCPIFRIYGQ 201 (1184)
Q Consensus 190 ~gcrP~l~Iy~~ 201 (1184)
.|-++-|.+|+-
T Consensus 29 ~~~~~~L~lYNs 40 (586)
T KOG2007|consen 29 AGQPTELKLYNS 40 (586)
T ss_pred CCCCCeEEEeec
Confidence 455667788864
No 67
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=87.60 E-value=5 Score=48.82 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 001026 1041 IQLKFLAEEMQAISKGLEKVVQELTASENDGEVSG----NFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGED 1116 (1184)
Q Consensus 1041 i~L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d----~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd 1116 (1184)
.++..|...+.++...+.++...+.....+. ..+ .|.+.|..|.+.+++.++.++...++....++++..||...
T Consensus 324 ~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~-~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~~~~~~~~~~~~~~ 402 (432)
T smart00498 324 EKYDKLQKDLSDLKTRFEKLVEYYGEDPKDT-SPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRKQLVKETTEYEQSS 402 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4566666666666666666665554444331 223 45566666777777777777777778888889999999875
Q ss_pred CC--CCCHHHHHHHHHHHHHHHHHHHHH
Q 001026 1117 PA--RCPFEQVVSTLLNFVKMFVLAHEE 1142 (1184)
Q Consensus 1117 ~~--~~~~e~ff~~l~~F~~~fk~a~ee 1142 (1184)
.. ......+|....+|...++..+++
T Consensus 403 ~~~~~~~~~~~~~~~~d~~~~~d~~~~~ 430 (432)
T smart00498 403 SRQKERNPSMDFEVERDFLGVLDSLLEE 430 (432)
T ss_pred hhhhhccchhhhhhhhhhhhhHHHHHHh
Confidence 42 223445678888888888877765
No 68
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=86.87 E-value=3 Score=43.00 Aligned_cols=113 Identities=17% Similarity=0.194 Sum_probs=67.5
Q ss_pred CCceeeeCcEEEecCCCCCCcchhHHhhccHHHHHHHHhhhCCCCcEEEEEeccCCcCcccccccccCCce--EEecCCC
Q 001026 14 DGLLEISERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMT--VMDYPRH 91 (1184)
Q Consensus 14 lDLtyIT~RIiams~gfPa~~~~e~~YRN~i~dV~~fL~~~H~~~~y~V~Nl~ee~~~~~~~~~~~~f~~~--V~~~P~~ 91 (1184)
.|..|.-.||+|.. ..+......+|+- .-||-=+.-+.+......+..+-+-. +-|.=+-
T Consensus 7 i~~~~f~t~Ivv~P-----------------l~~~ae~~~rh~~-t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~ 68 (172)
T COG5350 7 IDFDPFMTRIVVSP-----------------LSVIAETAARHGP-THMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEP 68 (172)
T ss_pred cccccceeeeEech-----------------HHHHHHHHhhcCC-ceEEEeecccccccCccccchhhceeEeeccccCC
Confidence 35556666776662 2345556667765 35655555454444333332222111 1121112
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHH-HHHHHHHHhhC
Q 001026 92 YEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAF-MLAALLIYRKQ 147 (1184)
Q Consensus 92 ~~~~p~p~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~-mia~yLly~~~ 147 (1184)
+.||-+|.-+.+..+..-+++|=..-+ ++|||-+|-+|+|+. ||+++-++..+
T Consensus 69 ~~g~~ap~e~Hv~~i~DF~~~wp~~ap---llIHC~aGISRStA~A~i~a~ala~~~ 122 (172)
T COG5350 69 DDGWIAPGEAHVRAIIDFADEWPRFAP---LLIHCYAGISRSTAAALIAALALAPDM 122 (172)
T ss_pred CccccCCCHHHHHHHHHHHhcCccccc---eeeeeccccccchHHHHHHHHhhcccc
Confidence 346677877777777777778866655 999999999998875 66777777654
No 69
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=86.87 E-value=0.35 Score=62.79 Aligned_cols=43 Identities=16% Similarity=0.316 Sum_probs=32.2
Q ss_pred CCCCCCC-cHHHHHHHHHHHHHHH--hcCCCcEEEEEecCCCCCchHHHH
Q 001026 92 YEGCPLL-TMETVHHFLRSSESWL--SLGHQNVLLMHCERGGWPVLAFML 138 (1184)
Q Consensus 92 ~~~~p~p-~L~~l~~~c~~i~~WL--~~d~~NVvvvHCk~Gkgr~tg~mi 138 (1184)
|.+|-+| .-.-|+.|.+.+..+- .+++ +||||.||-|| ||+.|
T Consensus 703 Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGP---iVVHCSAGvGR-TG~fi 748 (1087)
T KOG4228|consen 703 WPDHGVPETPTGLLKFRRRVKTFNPPDAGP---IVVHCSAGVGR-TGCFI 748 (1087)
T ss_pred CCCCCCcccchHHHHHHHHhccCCCcCCCC---EEEECCCCCCC-cceEE
Confidence 4444455 3366889999888876 5566 99999999999 89744
No 70
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=86.71 E-value=5.4 Score=52.28 Aligned_cols=118 Identities=19% Similarity=0.315 Sum_probs=63.1
Q ss_pred HHHHHHHHHhhhhcCCCCCcceeeeeccchhchhc------cccc------CCc------chHHHHHHH---H----HHH
Q 001026 990 RIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTD------TRAR------NNK------MTLMHYLCK---I----QLK 1044 (1184)
Q Consensus 990 ~lL~~IL~iGN~LN~gt~rG~A~GFkL~SL~KL~d------tKs~------d~k------~TLLhflvk---i----~L~ 1044 (1184)
.|=+-+|.||-.+|+=..+++-.=||=+=|.+|.. ||+. -.+ .+=|+|..+ | ++.
T Consensus 318 ~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevN 397 (1041)
T KOG0243|consen 318 EINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVN 397 (1041)
T ss_pred hhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccc
Confidence 34455788888888777777777777666666553 2211 111 334666666 0 000
Q ss_pred -HH--HHHHHHHHHHHHHHHHHHhhhccCCcc---chhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1045 -FL--AEEMQAISKGLEKVVQELTASENDGEV---SGNF------CKLLKEFLSYAEGEVRSLALLYSSVGRNAD 1107 (1184)
Q Consensus 1045 -~L--~~El~~l~k~L~kv~~el~~s~~d~~~---~d~f------~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~ 1107 (1184)
.| ..=|+++...|++++++|.+..+..++ .+.| ++.+..-+++.+.+|+.+++.+.++.+.|.
T Consensus 398 Qkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 398 QKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 012344445556666666655443221 2444 445566666666666666666666665554
No 71
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=86.28 E-value=13 Score=43.88 Aligned_cols=7 Identities=57% Similarity=0.791 Sum_probs=3.2
Q ss_pred CccCCCC
Q 001026 323 IEEKDGL 329 (1184)
Q Consensus 323 ~~~~~~~ 329 (1184)
||+|+||
T Consensus 142 Ddgk~gL 148 (518)
T KOG1830|consen 142 DDGKDGL 148 (518)
T ss_pred cCCcccc
Confidence 4444444
No 72
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=86.26 E-value=6.1 Score=43.44 Aligned_cols=98 Identities=20% Similarity=0.275 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccC----CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 001026 1042 QLKFLAEEMQAISKGLEKVVQELTASEND----GEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDP 1117 (1184)
Q Consensus 1042 ~L~~L~~El~~l~k~L~kv~~el~~s~~d----~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~ 1117 (1184)
+.+.+.+.|..+++.|.++...+...... ....+.|.+.+..+ +..+-..|...+..+.+.+..+-.|.++..
T Consensus 5 ~~k~i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~l---a~~E~~~L~~~L~~lae~~~~i~d~~q~qv 81 (211)
T cd07598 5 QTKFIQERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAY---ADTENPSLKQGLKNFAECLAALQDYRQAEV 81 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777766654321 12234555554443 222234455555555555555555555532
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1118 ARCPFEQVVSTLLNFVKMFVLAHEEN 1143 (1184)
Q Consensus 1118 ~~~~~e~ff~~l~~F~~~fk~a~ee~ 1143 (1184)
... ...|..-|.+|.+.++.+++.+
T Consensus 82 ~~l-~~~v~epLk~Y~~l~k~~k~~~ 106 (211)
T cd07598 82 ERL-EAKVVQPLALYGTICKHARDDL 106 (211)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 211 1233444445555554444444
No 73
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=85.66 E-value=15 Score=44.51 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1123 EQVVSTLLNFVKMFVLAHEENCRQLEF 1149 (1184)
Q Consensus 1123 e~ff~~l~~F~~~fk~a~ee~~k~~e~ 1149 (1184)
+++......|...|.....|..+|+.-
T Consensus 335 ~~L~~~Y~~F~~aY~~LL~Ev~RRr~~ 361 (412)
T PF04108_consen 335 EQLCEFYEGFLSAYDSLLLEVERRRAV 361 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555666677766666655544
No 74
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=85.49 E-value=23 Score=42.62 Aligned_cols=50 Identities=12% Similarity=0.242 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLY 1099 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~ 1099 (1184)
...|..+|+++++++..++.++..+.++ .++++.-|+.++..++.|+...
T Consensus 61 ~~kL~~~lk~~e~~i~~~~~ql~~s~~~-------l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 61 RAKLEKQLKSLETEIASLEAQLIETADD-------LKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHhhHHHHHHHHHHHHHHH
Confidence 3445566666666666666666665544 3456666677777777776665
No 75
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=85.21 E-value=14 Score=43.65 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=8.9
Q ss_pred cccccccccCCCcCCcccceEE
Q 001026 283 RDEIDILWNSKDLFSKEFRAEV 304 (1184)
Q Consensus 283 k~eLD~~~~~~~~fp~dF~vel 304 (1184)
|..|+-.|-....++...+.||
T Consensus 5 KRnIePrhlcr~~lp~~~~~EL 26 (518)
T KOG1830|consen 5 KRNIEPRHLCRGTLPSGIRSEL 26 (518)
T ss_pred cccCchhhhhhhccccccccce
Confidence 4444443333334444444444
No 76
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=84.23 E-value=12 Score=44.71 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc--------C---CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1042 QLKFLAEEMQAISKGLEKVVQELTASEN--------D---GEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVG 1103 (1184)
Q Consensus 1042 ~L~~L~~El~~l~k~L~kv~~el~~s~~--------d---~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~ 1103 (1184)
+|+.+..||..+.+.|.+++..+....- . ......|..-..+++...++.|+.+.+-|.-++
T Consensus 251 qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~DL~dDL~ka~eTf~lVe 323 (426)
T smart00806 251 QLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIADLKEDLEKAEETFDLVE 323 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666555543210 0 011234555555555555555555544444443
No 77
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=84.20 E-value=7.9 Score=48.77 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=44.3
Q ss_pred eeeeeccchhchhccccc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHH
Q 001026 1011 AVGFRLDSLLKLTDTRAR-NNKMTLMHYLCKIQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAE 1089 (1184)
Q Consensus 1011 A~GFkL~SL~KL~dtKs~-d~k~TLLhflvki~L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~ 1089 (1184)
..||.|+-+.-..+++.. +.-..++..|.+.+++.+.+.++.+...|..+.+.++.-.......+.-...+.+++..+.
T Consensus 240 ~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~ 319 (560)
T PF06160_consen 240 EEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAK 319 (560)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456766654444444333 2234455555556666666666666666655554444322211111222344555555554
Q ss_pred HHHHHHHHHHHHH
Q 001026 1090 GEVRSLALLYSSV 1102 (1184)
Q Consensus 1090 ~~l~~L~~~~~~~ 1102 (1184)
...+.|...+..+
T Consensus 320 ~~~~~l~~e~~~v 332 (560)
T PF06160_consen 320 EQNKELKEELERV 332 (560)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 78
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.67 E-value=15 Score=47.54 Aligned_cols=51 Identities=6% Similarity=-0.039 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCH--HHHHHHHHHHHHHH
Q 001026 1086 SYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPF--EQVVSTLLNFVKMF 1136 (1184)
Q Consensus 1086 ~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~--e~ff~~l~~F~~~f 1136 (1184)
+...++++.+.+..+.+.++.++++.-+.......+. .+|++.|..|-..+
T Consensus 596 e~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l 648 (717)
T PF10168_consen 596 EKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQL 648 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Confidence 3344455555555666666666666555442222221 24555555544443
No 79
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=83.62 E-value=8.7 Score=48.45 Aligned_cols=14 Identities=50% Similarity=0.748 Sum_probs=8.6
Q ss_pred Ccceeee--eccchhc
Q 001026 1008 RGSAVGF--RLDSLLK 1021 (1184)
Q Consensus 1008 rG~A~GF--kL~SL~K 1021 (1184)
|.+|.|| +++.|.|
T Consensus 343 rrk~egfddk~~eLEK 358 (1265)
T KOG0976|consen 343 RRKAEGFDDKLNELEK 358 (1265)
T ss_pred HHhhcchhHHHHHHHH
Confidence 5677888 4455554
No 80
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=83.58 E-value=5.7 Score=51.01 Aligned_cols=12 Identities=17% Similarity=0.412 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 001026 1046 LAEEMQAISKGL 1057 (1184)
Q Consensus 1046 L~~El~~l~k~L 1057 (1184)
|+.||+.|+.+|
T Consensus 423 LE~dvkkLraeL 434 (697)
T PF09726_consen 423 LEADVKKLRAEL 434 (697)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 81
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=83.47 E-value=18 Score=47.65 Aligned_cols=15 Identities=7% Similarity=-0.048 Sum_probs=9.3
Q ss_pred ccccCCeEEEEEecC
Q 001026 241 CHIQGDVVLECISLD 255 (1184)
Q Consensus 241 ~~v~GDV~i~~~h~~ 255 (1184)
..+.++|+.+++-..
T Consensus 567 ~~~~~~v~~r~~~~~ 581 (1758)
T KOG0994|consen 567 TGVEVNVKERKVLKS 581 (1758)
T ss_pred ccceeeeeeeeeccc
Confidence 446667777766544
No 82
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=82.95 E-value=37 Score=43.00 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=16.4
Q ss_pred cEEEEEecCCCCCchHHHHHHHHHHh
Q 001026 120 NVLLMHCERGGWPVLAFMLAALLIYR 145 (1184)
Q Consensus 120 NVvvvHCk~Gkgr~tg~mia~yLly~ 145 (1184)
..|-||-.+ +|.|.|-.++-|||-.
T Consensus 208 KFveiHf~d-k~~VvGGyvSHYLLEk 232 (1259)
T KOG0163|consen 208 KFVEIHFDD-KGQVVGGYVSHYLLEK 232 (1259)
T ss_pred ceEEEEEcC-CCceechhhhHHHHHH
Confidence 478888854 5555666777777653
No 83
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=82.00 E-value=59 Score=34.33 Aligned_cols=59 Identities=19% Similarity=0.086 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1091 EVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKA 1154 (1184)
Q Consensus 1091 ~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~ekkk~ 1154 (1184)
..+.|.+.+.+..+.++++...+.+..-. ....+|. |+..+..-++++.+..-+++++.
T Consensus 79 ~~~~l~d~inE~t~k~~El~~~i~el~~~-~~Ks~~~----~l~q~~~~~eEtv~~~ieqqk~~ 137 (165)
T PF09602_consen 79 TGNSLNDSINEWTDKLNELSAKIQELLLS-PSKSSFS----LLSQISKQYEETVKQLIEQQKLT 137 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc-hHHHHHH----HHHHHHhhHHHHHHHHHHHHHHH
Confidence 33455555566666666666655432111 2223444 44444444455554444444433
No 84
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=81.69 E-value=24 Score=34.37 Aligned_cols=63 Identities=6% Similarity=0.080 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1045 FLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNAD 1107 (1184)
Q Consensus 1045 ~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~ 1107 (1184)
.+..+|..+...+..+.+................+.|...+..+......+...++++++...
T Consensus 12 ~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~ 74 (117)
T smart00503 12 EIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENL 74 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344455555544444444444333222222345667777777777777777777777665544
No 85
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=81.51 E-value=14 Score=46.04 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1089 EGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCR 1145 (1184)
Q Consensus 1089 ~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~~k 1145 (1184)
..++..|+..|+++...|..++.+|||.. ...+++--.|.+.-.+|+..+++.+.
T Consensus 903 ~~~~p~~~~~ledL~qRy~a~LqmyGEk~--Ee~EELrlDl~dlK~mYk~QIdeLl~ 957 (961)
T KOG4673|consen 903 ADRVPGIKAELEDLRQRYAAALQMYGEKD--EELEELRLDLVDLKEMYKEQIDELLN 957 (961)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhcchH--HHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 34556788889999999999999999953 34577777888888888888877654
No 86
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=81.46 E-value=56 Score=36.12 Aligned_cols=40 Identities=8% Similarity=0.103 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhCCCCC
Q 001026 1079 KLLKEFLSYAEGEVRSLA----LLYSSVGRNADALAQYFGEDPA 1118 (1184)
Q Consensus 1079 ~~m~~Fl~~a~~~l~~L~----~~~~~~~~~~~~l~~yFGEd~~ 1118 (1184)
.+|..++.+.+.++.... .....-+....++..+||..-.
T Consensus 131 ~Kmpk~i~e~~~~~~kk~~~~~~~k~rkerl~eEvre~fGy~vD 174 (217)
T PF10147_consen 131 AKMPKWIAEWKAKIAKKEAKAQAAKERKERLIEEVREHFGYKVD 174 (217)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCC
Confidence 344455555444444433 3444455677889999998544
No 87
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=81.33 E-value=13 Score=40.45 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELTASEN 1069 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~~s~~ 1069 (1184)
+..+..++.+|+..|+++.+.+....+
T Consensus 4 ~~~~E~~~~~le~~l~kl~K~~~~~~d 30 (200)
T cd07637 4 IDEVETDVVEIEAKLDKLVKLCSGMIE 30 (200)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 445666666777666666666555443
No 88
>PLN00047 photosystem II biogenesis protein Psb29; Provisional
Probab=81.16 E-value=13 Score=42.17 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhhhcCCCCC----cceeeeeccchhchhc-ccccCCcchHHHHHHH
Q 001026 988 LKRIMQTILSLGNALNHGTAR----GSAVGFRLDSLLKLTD-TRARNNKMTLMHYLCK 1040 (1184)
Q Consensus 988 L~~lL~~IL~iGN~LN~gt~r----G~A~GFkL~SL~KL~d-tKs~d~k~TLLhflvk 1040 (1184)
.+++++.+|.=.++|+....- --|.|| +..+.+|++ .+..+.+..+++-+|+
T Consensus 77 YrrvvdELLVElHLLs~n~~F~yDplFALGl-Vtvfd~fm~GY~Pee~~~~IF~Alc~ 133 (283)
T PLN00047 77 YSTVLQELLVQQHLMRYKKTYRYDPVFALGF-VTVYDQLMEGYPSDEDRDAIFKAYIK 133 (283)
T ss_pred HHHHHHHHHHHHHHHHhccCceeCchhhhhh-HHHHHHHHccCCChHHHHHHHHHHHH
Confidence 455666666666777666521 123344 122222222 2334667888888888
No 89
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=80.65 E-value=17 Score=42.62 Aligned_cols=68 Identities=19% Similarity=0.132 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALA 1110 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~ 1110 (1184)
|+...++..+++..-+++.+|+++...+.+....-....+..+.+|..++..+.+.+.++....+.|.
T Consensus 90 l~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~ 157 (499)
T COG4372 90 LGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLA 157 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444554443322111222233444444555555555555555554444444
No 90
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=79.92 E-value=15 Score=46.44 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=29.2
Q ss_pred cceeeeeccchhchhcccccCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001026 1009 GSAVGFRLDSLLKLTDTRARNN-KMTLMHYLCKIQLKFLAEEMQAISKGLEKVVQELTA 1066 (1184)
Q Consensus 1009 G~A~GFkL~SL~KL~dtKs~d~-k~TLLhflvki~L~~L~~El~~l~k~L~kv~~el~~ 1066 (1184)
-...||.|+-+.--.++..... -...+.-|...+++...+.++.+...|..+...++.
T Consensus 242 m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lek 300 (569)
T PRK04778 242 LVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILER 300 (569)
T ss_pred HHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456887776544343333211 123333344455666666666666665555544443
No 91
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=79.83 E-value=43 Score=31.92 Aligned_cols=89 Identities=9% Similarity=0.082 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHH
Q 001026 1048 EEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVS 1127 (1184)
Q Consensus 1048 ~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~ 1127 (1184)
..|..+...+..+++.+...... .....+++.|...+..+...+..+...+.++... +.+.. .-...-.
T Consensus 3 ~~l~~in~~v~~l~k~~~~lGt~-~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~--------~~~~~--~~~~~k~ 71 (102)
T PF14523_consen 3 SNLFKINQNVSQLEKLVNQLGTP-RDSQELREKIHQLIQKTNQLIKEISELLKKLNSL--------SSDRS--NDRQQKL 71 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-SS-S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------H------HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhhhh--hhHHHHH
Confidence 34445555555555555544432 2345677777766666666555555555544443 11110 1112234
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001026 1128 TLLNFVKMFVLAHEENCRQL 1147 (1184)
Q Consensus 1128 ~l~~F~~~fk~a~ee~~k~~ 1147 (1184)
....+..+|+.+..++.+..
T Consensus 72 ~~~KL~~df~~~l~~fq~~q 91 (102)
T PF14523_consen 72 QREKLSRDFKEALQEFQKAQ 91 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55566677777776665433
No 92
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=79.68 E-value=45 Score=33.58 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1048 EEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNAD 1107 (1184)
Q Consensus 1048 ~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~ 1107 (1184)
..|..+......+...+......+ .+..-...+..|+......|......+..++....
T Consensus 34 ~~l~~l~~~~~~~~~~~~~~~~~g-~~~~~l~~~~~f~~~l~~~i~~q~~~l~~~~~~~e 92 (141)
T TIGR02473 34 TQLQQLIKYREEYEQQALEKVGAG-TSALELSNYQRFIRQLDQRIQQQQQELALLQQEVE 92 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433322222 22333455667777776666666666655554443
No 93
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=79.37 E-value=22 Score=46.44 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=16.8
Q ss_pred eccchhchhcccccCCcchHHHHHHH
Q 001026 1015 RLDSLLKLTDTRARNNKMTLMHYLCK 1040 (1184)
Q Consensus 1015 kL~SL~KL~dtKs~d~k~TLLhflvk 1040 (1184)
+|+....|.+|--.-+-.-|+.|.++
T Consensus 157 ~L~pi~LL~eTekAig~~~ll~~h~e 182 (1072)
T KOG0979|consen 157 RLSPIELLVETEKAIGAEELLQYHIE 182 (1072)
T ss_pred cCChHHHHHHHHHhcCchhhHHHHHH
Confidence 56666666666554454557777776
No 94
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=79.14 E-value=25 Score=37.68 Aligned_cols=58 Identities=22% Similarity=0.344 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1046 LAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALA 1110 (1184)
Q Consensus 1046 L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~ 1110 (1184)
+.+|+.++.+.+..+..++...+++ .....++.+..+.+++.++..++++.+.+.++.
T Consensus 93 l~~el~~l~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 93 LQEELDQLQERIQELESELEKLKED-------LQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433322 222335556666666666666666665555443
No 95
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=79.11 E-value=7.4 Score=47.02 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001026 1083 EFLSYAEGEVRSLALLYSSVGRNADALAQYF 1113 (1184)
Q Consensus 1083 ~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yF 1113 (1184)
.|+..-+..+..|+.+++.+.+.|..+-.+.
T Consensus 292 qfL~~QedL~~DL~eDl~k~~etf~lveq~~ 322 (424)
T PF03915_consen 292 QFLKLQEDLLSDLKEDLKKASETFALVEQCT 322 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666667777776666665554433
No 96
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=78.61 E-value=42 Score=40.49 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1046 LAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSS 1101 (1184)
Q Consensus 1046 L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~ 1101 (1184)
+..-++.|...|..+++.|..+.++ ++.|.--++..+.....|++.|..
T Consensus 388 ~~k~lqnLqe~la~tqk~LqEsr~e-------KetLqlelkK~k~nyv~LQEry~~ 436 (527)
T PF15066_consen 388 IEKTLQNLQEALANTQKHLQESRNE-------KETLQLELKKIKANYVHLQERYMT 436 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3344455555555555555555443 223333334444444444444443
No 97
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=78.41 E-value=21 Score=44.98 Aligned_cols=11 Identities=18% Similarity=0.332 Sum_probs=5.7
Q ss_pred EEEEecCCCCC
Q 001026 122 LLMHCERGGWP 132 (1184)
Q Consensus 122 vvvHCk~Gkgr 132 (1184)
++|--+.|.|.
T Consensus 147 IIVSGESGAGK 157 (1259)
T KOG0163|consen 147 IIVSGESGAGK 157 (1259)
T ss_pred EEEecCCCCCc
Confidence 45555555554
No 98
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=78.39 E-value=93 Score=35.89 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhhhhc
Q 001026 988 LKRIMQTILSLGNALN 1003 (1184)
Q Consensus 988 L~~lL~~IL~iGN~LN 1003 (1184)
|.....-++.--|+.|
T Consensus 88 L~~~~~~l~e~~~~~~ 103 (294)
T COG1340 88 LRKEYRELKEKRNEFN 103 (294)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 4444444455555554
No 99
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=77.97 E-value=19 Score=36.71 Aligned_cols=24 Identities=4% Similarity=0.090 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCC
Q 001026 1092 VRSLALLYSSVGRNADALAQYFGE 1115 (1184)
Q Consensus 1092 l~~L~~~~~~~~~~~~~l~~yFGE 1115 (1184)
++.+.+.+.+..+...+++.+...
T Consensus 111 ~~~~~~~~~~y~~~~~~~~~~~~~ 134 (181)
T PF12729_consen 111 LEEFKEAWKAYRKLRDQVIELAKS 134 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Confidence 344444444444444444444433
No 100
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=77.95 E-value=74 Score=40.63 Aligned_cols=87 Identities=22% Similarity=0.196 Sum_probs=45.9
Q ss_pred chHHHHHHH--HHHHHH-------HHHHHHHHHHHHHHHHHHhhhcc--------CCccchhhHHHHHHHHHHHHHHHHH
Q 001026 1032 MTLMHYLCK--IQLKFL-------AEEMQAISKGLEKVVQELTASEN--------DGEVSGNFCKLLKEFLSYAEGEVRS 1094 (1184)
Q Consensus 1032 ~TLLhflvk--i~L~~L-------~~El~~l~k~L~kv~~el~~s~~--------d~~~~d~f~~~m~~Fl~~a~~~l~~ 1094 (1184)
.||.+.+.. ..+.+| ..|+.++...++++..+|...+. ..+..+.+.+.|..-|..++++...
T Consensus 99 ~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~ 178 (660)
T KOG4302|consen 99 GTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSD 178 (660)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 488888877 233333 34555666666666666655411 1122333444444444444444333
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCC
Q 001026 1095 LALLYSSVGRNADALAQYFGEDPA 1118 (1184)
Q Consensus 1095 L~~~~~~~~~~~~~l~~yFGEd~~ 1118 (1184)
=.+.+.........+|.-+|.+..
T Consensus 179 Rlekv~~~~~~I~~l~~~Lg~~~~ 202 (660)
T KOG4302|consen 179 RLEKVLELKEEIKSLCSVLGLDFS 202 (660)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcc
Confidence 333444555666777777776554
No 101
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=77.57 E-value=44 Score=36.84 Aligned_cols=95 Identities=15% Similarity=0.176 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCH
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPF 1122 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~ 1122 (1184)
+..+..+...|.+++......+....+ ..-.|.+.|.++++....-...+....+.+...+.++..-+ -
T Consensus 21 f~~~e~~~~kL~k~~K~Y~~av~~m~~---~q~~~~e~l~~lY~p~~~~~~~~~~v~e~~d~~~~~l~~~l--------~ 89 (211)
T cd07588 21 FNKQQASANRLQKDLKNYLNSVRAMKQ---ASKTLSETLKELYEPDWPGREHLASIFEQLDLLWNDLEEKL--------S 89 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHH--------H
Confidence 334444445555544444433333221 12345556666654332112222333333333333333322 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1123 EQVVSTLLNFVKMFVLAHEENCRQLE 1148 (1184)
Q Consensus 1123 e~ff~~l~~F~~~fk~a~ee~~k~~e 1148 (1184)
+.++.-+.+|+..|....+...||..
T Consensus 90 ~~Vl~Pl~~~~s~f~~i~k~I~KR~~ 115 (211)
T cd07588 90 DQVLGPLTAYQSQFPEVKKRIAKRGR 115 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46777777787777777666655444
No 102
>PRK13266 Thf1-like protein; Reviewed
Probab=77.18 E-value=21 Score=39.56 Aligned_cols=52 Identities=17% Similarity=0.321 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhhhcCCCCC----cceeeeeccchhchhc-ccccCCcchHHHHHHH
Q 001026 988 LKRIMQTILSLGNALNHGTAR----GSAVGFRLDSLLKLTD-TRARNNKMTLMHYLCK 1040 (1184)
Q Consensus 988 L~~lL~~IL~iGN~LN~gt~r----G~A~GFkL~SL~KL~d-tKs~d~k~TLLhflvk 1040 (1184)
.+++++.+|.=.+.|+....- --|.|| +..+.+|++ .+..+.+..+++-+|+
T Consensus 26 Yrrvv~ELLVElHLl~~n~~F~yDplfAlGl-vt~fd~fm~GY~Pee~~~~IF~Alc~ 82 (225)
T PRK13266 26 YRRVVDELLVELHLLSVNSDFKYDPLFALGL-VTVFDRFMQGYRPEEHKDSIFNALCQ 82 (225)
T ss_pred HHHHHHHHHHHHHHHHhccCceeCchHHhhH-HHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 567777777778888877621 123343 122222222 2334667889999998
No 103
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.67 E-value=55 Score=41.72 Aligned_cols=49 Identities=24% Similarity=0.405 Sum_probs=23.2
Q ss_pred eeeccch-hchhccccc-CCcchHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q 001026 1013 GFRLDSL-LKLTDTRAR-NNKMTLMHYLCK------IQLKFLAEEMQAISKGLEKVV 1061 (1184)
Q Consensus 1013 GFkL~SL-~KL~dtKs~-d~k~TLLhflvk------i~L~~L~~El~~l~k~L~kv~ 1061 (1184)
.|++..| .||.||+.. .+..+-+.-+-+ ..+++|..+|+++...|.++.
T Consensus 450 n~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~ 506 (1118)
T KOG1029|consen 450 NFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLA 506 (1118)
T ss_pred HHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444 257777764 222333333333 234455556665555554443
No 104
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=76.06 E-value=72 Score=39.65 Aligned_cols=79 Identities=11% Similarity=0.132 Sum_probs=41.2
Q ss_pred HHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 001026 1063 ELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEE 1142 (1184)
Q Consensus 1063 el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee 1142 (1184)
.+....+.....+.|...+.+|......+++.|++...++.+.+.++.. .+.+...+++..+.|.+=+..|+..+.+
T Consensus 208 fl~g~d~~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek---~~~~~eslre~~~~L~~D~nK~~~y~~~ 284 (581)
T KOG0995|consen 208 FLKGEDNSSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREK---DPGKEESLREKKARLQDDVNKFQAYVSQ 284 (581)
T ss_pred HhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcchHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3333344334456677777777776666667666666666666553322 1112223444445555555555554444
Q ss_pred HH
Q 001026 1143 NC 1144 (1184)
Q Consensus 1143 ~~ 1144 (1184)
+.
T Consensus 285 ~~ 286 (581)
T KOG0995|consen 285 MK 286 (581)
T ss_pred HH
Confidence 33
No 105
>KOG4121 consensus Nuclear pore complex, Nup133 component (sc Nup133) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.61 E-value=23 Score=46.36 Aligned_cols=120 Identities=18% Similarity=0.111 Sum_probs=62.5
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccc------hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1029 NNKMTLMHYLCKIQLKFLAEEMQAISKGLEKVVQELTASENDGEVS------GNFCKLLKEFLSYAEGEVRSLALLYSSV 1102 (1184)
Q Consensus 1029 d~k~TLLhflvki~L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~------d~f~~~m~~Fl~~a~~~l~~L~~~~~~~ 1102 (1184)
+++..++++|+++-..+-+.++.+-.++++.+.+-+....++.... .+|.+++..|+=+..-+-+.+-+++.+-
T Consensus 773 ~~Rrdwlq~L~~vg~~e~Ai~iAEKY~DfqsLV~lcdqld~kdrLq~y~~~~~e~~~eFs~~lf~y~ve~~k~~eLl~~f 852 (1128)
T KOG4121|consen 773 DNRRDWLQVLCKVGQYEQAIQIAEKYKDFQSLVQLCDQLDQKDRLQDYETFFNEYPKEFSFFLFEYLVEHGKLGELLFRF 852 (1128)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhhhHHHHHHHHHhhCchhHHHHHHHHHHhhhHHHHHHHHHHHHhhchHHHHHhcc
Confidence 6778899999995544444455555555555555544443322111 1222334444444444444455555666
Q ss_pred HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1103 GRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERK 1152 (1184)
Q Consensus 1103 ~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~ekk 1152 (1184)
......|+.||-+..- ..+-=+..-+-.+|.+|.+-...-...|.|
T Consensus 853 ~~~~s~L~qFf~~~d~----~~lsWi~ei~nGdy~rAs~~L~~la~~e~k 898 (1128)
T KOG4121|consen 853 PQQHSVLIQFFQERDY----GHLSWIQEILNGDYERASNTLLNLAVDEEK 898 (1128)
T ss_pred hhhHHHHHHHHhhccc----cccHHHHHHhcCcHHHHHHHHHHhcchHHH
Confidence 6666777788866321 111112333456777776655544444433
No 106
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=75.47 E-value=68 Score=36.36 Aligned_cols=93 Identities=14% Similarity=0.185 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCH
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPF 1122 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~ 1122 (1184)
+..+..++..|...+..+...+.....++ +........-+..|+.-...+......+.....++. .||++....+.
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~~~~~~~~---~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~-~l~~~~~~~~~ 122 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKATKVSRKA---QQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVE-SLNENGDQLPS 122 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcccCCCCH
Confidence 34444455555555555554444333222 233334444444454444444444444444444443 45553333344
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001026 1123 EQVVSTLLNFVKMFVLA 1139 (1184)
Q Consensus 1123 e~ff~~l~~F~~~fk~a 1139 (1184)
.++-..+.+--.+++..
T Consensus 123 ~~l~~~l~ea~~mL~em 139 (264)
T PF06008_consen 123 EDLQRALAEAQRMLEEM 139 (264)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444433333
No 107
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=74.63 E-value=29 Score=43.59 Aligned_cols=112 Identities=17% Similarity=0.235 Sum_probs=58.0
Q ss_pred HHcchhHHHHHHHHHHHh--hhhcCCCCCcceeeeeccchhchhcc--cccCCcchHHHHHHHHHHHHHHHHHH-----H
Q 001026 982 VRNSIKLKRIMQTILSLG--NALNHGTARGSAVGFRLDSLLKLTDT--RARNNKMTLMHYLCKIQLKFLAEEMQ-----A 1052 (1184)
Q Consensus 982 L~~S~~L~~lL~~IL~iG--N~LN~gt~rG~A~GFkL~SL~KL~dt--Ks~d~k~TLLhflvki~L~~L~~El~-----~ 1052 (1184)
.+++..|.-|+.+++.+- ++.|.+-.++...+|.+++.+|+..- ++..-...+..-++++.+++++..-. +
T Consensus 456 s~ssg~fIPi~~ll~Eml~~~~~nrkp~~~~~k~~D~~~~Lk~sk~~L~sk~yq~~~ieqv~~lL~ey~a~~s~~IaFPE 535 (661)
T KOG2256|consen 456 SRSSGTFIPLSPLLVEMLKSVTFNRKPKASSVKPIDFDSTLKLSKRYLRSKAYQDGVIEQVIELLLEYFALFSKSIAFPE 535 (661)
T ss_pred HhhcCceeecHHHHHHHHHHhhccCCccccccCCCCeeEEeecCHHHhccHHHHHHHHHHHHHHHHHHHHHHhccCCchh
Confidence 455666666777776664 45566656666689999999988643 22111222333333322222222111 1
Q ss_pred H-HHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 001026 1053 I-SKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALL 1098 (1184)
Q Consensus 1053 l-~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~ 1098 (1184)
| ..-+-+++..++.+.+ ..|...++.|++..+...+=+++.
T Consensus 536 Lv~p~i~rLk~f~k~skn-----~~~~r~v~~li~kle~ns~FV~~k 577 (661)
T KOG2256|consen 536 LVLPVIMRLKSFLKESKN-----GNYKRVVKQLIEKLEENSKFVLEK 577 (661)
T ss_pred hhHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1122344444555443 356677777777666655544433
No 108
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=74.52 E-value=26 Score=40.21 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 001026 1046 LAEEMQAISKGLEKVVQELT 1065 (1184)
Q Consensus 1046 L~~El~~l~k~L~kv~~el~ 1065 (1184)
|...+..|.+.|...++.++
T Consensus 136 lvq~I~~L~k~le~~~k~~e 155 (294)
T COG1340 136 LVQKIKELRKELEDAKKALE 155 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 109
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.13 E-value=83 Score=36.52 Aligned_cols=105 Identities=8% Similarity=0.125 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhCCCCCC--
Q 001026 1044 KFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQ--YFGEDPAR-- 1119 (1184)
Q Consensus 1044 ~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~--yFGEd~~~-- 1119 (1184)
..+..+++.+...+.++.+.=...-.........+.+|...+......-+.++..++.+++.....-. ..|.+...
T Consensus 43 e~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~~~~~~~r~rr 122 (297)
T KOG0810|consen 43 EEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQNRSSAGLRTRR 122 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccchhHH
Confidence 33444444444444444433222222222234556677777777777777777777777766554432 33443321
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1120 CPFEQVVSTLLNFVKMFVLAHEENCRQLE 1148 (1184)
Q Consensus 1120 ~~~e~ff~~l~~F~~~fk~a~ee~~k~~e 1148 (1184)
.+.+.+-..|.+.+..|.+...+++.+.+
T Consensus 123 tq~~~~~kkf~~~M~~f~~~~~~~r~~~k 151 (297)
T KOG0810|consen 123 TQTSALSKKLKELMNEFNRTQSKYREEYK 151 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334445666666677766665554333
No 110
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=74.10 E-value=13 Score=35.27 Aligned_cols=79 Identities=19% Similarity=0.185 Sum_probs=40.8
Q ss_pred HHHHHHHhhhCCCCcEEEEEeccCCcCcccccccccCCceEEecCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEE
Q 001026 45 GGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLM 124 (1184)
Q Consensus 45 ~dV~~fL~~~H~~~~y~V~Nl~ee~~~~~~~~~~~~f~~~V~~~P~~~~~~p~p~L~~l~~~c~~i~~WL~~d~~NVvvv 124 (1184)
+++.+.++ .+ ++.|.-+++...+ .. .+.| |.-..+++.+..+...+..++..+.+.-+||
T Consensus 7 ~~l~~~~~---~~-~~~iiDvR~~~e~----------~~--ghi~----gA~~ip~~~~~~~~~~~~~~~~~~~~~~ivv 66 (101)
T cd01518 7 AEWNELLE---DP-EVVLLDVRNDYEY----------DI--GHFK----GAVNPDVDTFREFPFWLDENLDLLKGKKVLM 66 (101)
T ss_pred HHHHHHHc---CC-CEEEEEcCChhhh----------hc--CEec----cccCCCcccHhHhHHHHHhhhhhcCCCEEEE
Confidence 45556554 23 4889898765322 11 1111 2111234444444444555554466678999
Q ss_pred EecCCCCCchHHHHHHHHHHhh
Q 001026 125 HCERGGWPVLAFMLAALLIYRK 146 (1184)
Q Consensus 125 HCk~Gkgr~tg~mia~yLly~~ 146 (1184)
+|..| .| +.+.|.+|...|
T Consensus 67 yC~~G-~r--s~~a~~~L~~~G 85 (101)
T cd01518 67 YCTGG-IR--CEKASAYLKERG 85 (101)
T ss_pred ECCCc-hh--HHHHHHHHHHhC
Confidence 99754 55 334455554443
No 111
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=74.08 E-value=15 Score=40.12 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELTASE 1068 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~~s~ 1068 (1184)
++....++..++..|.++.+.+....
T Consensus 4 l~~~E~~~~~l~~~l~kl~K~~~~~~ 29 (200)
T cd07603 4 LEQVEADVSELETRLEKLLKLCNGMV 29 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777776666665543
No 112
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=73.96 E-value=45 Score=36.53 Aligned_cols=22 Identities=9% Similarity=0.022 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 001026 1044 KFLAEEMQAISKGLEKVVQELT 1065 (1184)
Q Consensus 1044 ~~L~~El~~l~k~L~kv~~el~ 1065 (1184)
..+.+++.+|+..+.++.+.+.
T Consensus 4 ~~~E~~~~~l~~~~~Kl~K~~~ 25 (202)
T cd07606 4 QELEGSADELRDRSLKLYKGCR 25 (202)
T ss_pred HHHHhhHHHHHHHHHHHHHHHH
Confidence 3445555555555554444443
No 113
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=73.29 E-value=37 Score=34.99 Aligned_cols=48 Identities=17% Similarity=0.120 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1093 RSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEF 1149 (1184)
Q Consensus 1093 ~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~ 1149 (1184)
..|+....++++.-+.++.-|.+.. ..+.+|+..|+..++.+-.|+..
T Consensus 99 ~~L~~~~~e~eeeSe~lae~fl~g~---------~d~~~Fl~~f~~~R~~yH~R~~K 146 (150)
T PF07200_consen 99 ARLQAAASEAEEESEELAEEFLDGE---------IDVDDFLKQFKEKRKLYHLRRAK 146 (150)
T ss_dssp HHHHHHHHHHHHHHHHHC-S-SSSH---------HHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555566666666666665531 24778899999888887765543
No 114
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=73.23 E-value=37 Score=37.53 Aligned_cols=52 Identities=15% Similarity=0.283 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhhhcCCCCC----cceeeeeccchhchhc-ccccCCcchHHHHHHH
Q 001026 988 LKRIMQTILSLGNALNHGTAR----GSAVGFRLDSLLKLTD-TRARNNKMTLMHYLCK 1040 (1184)
Q Consensus 988 L~~lL~~IL~iGN~LN~gt~r----G~A~GFkL~SL~KL~d-tKs~d~k~TLLhflvk 1040 (1184)
.+++++.+|.=.+.|+.+..- --|.|| +..+.+|++ .+....+..+++-+|+
T Consensus 21 Yrrvv~ELLVe~HLl~~n~~F~yD~lfalG~-vt~fd~fm~GY~p~~~~~~If~Alc~ 77 (216)
T PF11264_consen 21 YRRVVDELLVELHLLSVNKDFQYDPLFALGL-VTVFDRFMQGYPPEEDKDSIFNALCQ 77 (216)
T ss_pred HHHHHHHHHHHHHHHHhccCceeCchHHhhH-HHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 567777777777777776521 123344 122333322 2344667888888888
No 115
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=73.16 E-value=48 Score=42.77 Aligned_cols=121 Identities=13% Similarity=0.205 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhhhcCCCCCcceeeeeccchhchhccccc--CCcchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 001026 990 RIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRAR--NNKMTLMHYLCK-----IQLKFLAEEMQAISKGLEKVVQ 1062 (1184)
Q Consensus 990 ~lL~~IL~iGN~LN~gt~rG~A~GFkL~SL~KL~dtKs~--d~k~TLLhflvk-----i~L~~L~~El~~l~k~L~kv~~ 1062 (1184)
.++++|++|--.-...-.+.+..-|.|+.|.++.-++++ .+...|=-|... -+|..|.+-|+=|+..|+-+-.
T Consensus 141 ~~~~~vfemeE~R~~Sp~~~~lp~~~Le~Ive~~~~~~~~~~~~~~lPtF~~~Desl~~~ll~L~arm~PLraSLdfLP~ 220 (683)
T PF08580_consen 141 ECIRLVFEMEEKRHSSPVRHGLPIFELETIVEEMPSSTNSSNKRFSLPTFSPQDESLYSSLLALFARMQPLRASLDFLPM 220 (683)
T ss_pred HHHHHHHHHHHHHccCCcccCCCcccHHHHHHhccccCCCCcCCcCCCCCCcHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 333444444433333323556777888888777742332 223222222111 1233333334444444433332
Q ss_pred HHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 001026 1063 ELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGED 1116 (1184)
Q Consensus 1063 el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd 1116 (1184)
.|+.-.... ...+....++.+.+.+.|.+.|+.+++.++.|-.=+|||
T Consensus 221 Ri~~F~~ra------~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELied 268 (683)
T PF08580_consen 221 RIEEFQSRA------ESIFPSACEELEDRYERLEKKWKKLEKEAESLKKELIED 268 (683)
T ss_pred HHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 232221111 122333344445555556666666666666666656654
No 116
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=72.81 E-value=67 Score=35.13 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCC----ccchhhHHHHHHHH
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELTASENDG----EVSGNFCKLLKEFL 1085 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~~s~~d~----~~~d~f~~~m~~Fl 1085 (1184)
+..+..++.+++..|.++.+.+....+.+ .....|...|.+|-
T Consensus 4 i~~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~ 50 (200)
T cd07639 4 IEEVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLA 50 (200)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566677777777777766665544322 11244555565554
No 117
>PF12825 DUF3818: Domain of unknown function in PX-proteins (DUF3818); InterPro: IPR024554 The function of this domain is not known, but it is almost always found C-terminal to a PX-domain (IPR001683 from INTERPRO).
Probab=72.47 E-value=20 Score=42.30 Aligned_cols=97 Identities=14% Similarity=0.280 Sum_probs=56.6
Q ss_pred HHcchhHHHHH-----HHHHHHhhhhcCCCCCcceeeeeccchhchhcccccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 982 VRNSIKLKRIM-----QTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCKIQLKFLAEEMQAISKG 1056 (1184)
Q Consensus 982 L~~S~~L~~lL-----~~IL~iGN~LN~gt~rG~A~GFkL~SL~KL~dtKs~d~k~TLLhflvki~L~~L~~El~~l~k~ 1056 (1184)
+..-++|+.++ +-+|.+||-+--- ..+.+|-=.+. .++++||+-+..+. |.++++++++.
T Consensus 51 ~~~~krlH~l~PY~~ikq~Lri~Np~~m~-----------~gm~dLfLaqp-fG~~sLlQrifs~~---L~~d~~~~~k~ 115 (341)
T PF12825_consen 51 FAQLKRLHSLIPYTVIKQILRITNPATMM-----------KGMMDLFLAQP-FGGRSLLQRIFSMV---LNDDIKEFEKE 115 (341)
T ss_pred HHHHHHHHHhCcHHHHHHHHhcCCHHHHH-----------HHHHHHHccCC-CCcCcHHHHHHHHH---HhhhHHHHHHH
Confidence 55566666654 4467777655432 12233333333 45899999888733 33466666666
Q ss_pred HHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1057 LEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYS 1100 (1184)
Q Consensus 1057 L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~ 1100 (1184)
+.++++.+.. .+.+.++++.|+..-+...+.+.+...
T Consensus 116 i~~le~~i~~-------~~~~~~~ik~~v~~~~~~~~~ir~~s~ 152 (341)
T PF12825_consen 116 IDKLEKKIGD-------SPEMCEKIKAFVYAPREEKDEIREESE 152 (341)
T ss_pred HHHHHHhhcC-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666554433 356777888887766665555554433
No 118
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=72.47 E-value=1e+02 Score=37.28 Aligned_cols=53 Identities=8% Similarity=0.061 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1049 EMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSS 1101 (1184)
Q Consensus 1049 El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~ 1101 (1184)
+|+..+.-++...+++...+.+....+.-++.+..-+.+...+++.+++++..
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~ 400 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKE 400 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544433222333344444444444444444444433
No 119
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=72.29 E-value=20 Score=39.43 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1124 QVVSTLLNFVKMFVLAHEENCRQLE 1148 (1184)
Q Consensus 1124 ~ff~~l~~F~~~fk~a~ee~~k~~e 1148 (1184)
.++..|..|+..|....+...||..
T Consensus 91 ~vL~pi~~~~s~f~~i~~~i~KR~~ 115 (211)
T cd07612 91 QALRTMESYMAQFPDVKERVAKRGR 115 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777766665555443
No 120
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.25 E-value=80 Score=35.93 Aligned_cols=23 Identities=13% Similarity=-0.041 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1081 LKEFLSYAEGEVRSLALLYSSVG 1103 (1184)
Q Consensus 1081 m~~Fl~~a~~~l~~L~~~~~~~~ 1103 (1184)
.+.-+...+.+|..+++.+.+-+
T Consensus 78 ~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 78 SKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333
No 121
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=72.22 E-value=63 Score=37.28 Aligned_cols=85 Identities=21% Similarity=0.155 Sum_probs=53.5
Q ss_pred cchHHHHHHHH------HHHHH---HHHHHHHHHHHHHHHHHHhhhcc-----CCccchhhHHHHHHHHHHHHHHHHHHH
Q 001026 1031 KMTLMHYLCKI------QLKFL---AEEMQAISKGLEKVVQELTASEN-----DGEVSGNFCKLLKEFLSYAEGEVRSLA 1096 (1184)
Q Consensus 1031 k~TLLhflvki------~L~~L---~~El~~l~k~L~kv~~el~~s~~-----d~~~~d~f~~~m~~Fl~~a~~~l~~L~ 1096 (1184)
-.||-|-|.++ .+.++ .++...|.+.|.++-.......+ |.-+...|...+...++.--.++..++
T Consensus 119 PKTl~~ALSraa~~ss~~l~~l~~~~~~~~~L~~aL~~~S~~~~~I~~aRL~qD~~I~~~Fn~~l~~~Ln~~~~~a~k~R 198 (289)
T PF10455_consen 119 PKTLYHALSRAALTSSEILEELKSSDEDEDPLSKALLKYSSAYEKIAQARLEQDQLIQKEFNKKLQTTLNTDFKKANKAR 198 (289)
T ss_pred CccHHHHHHHHHHHhHHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999992 23333 12335566666555443332221 222345687788888877777777888
Q ss_pred HHHHHHHHHHHHHHhhhCC
Q 001026 1097 LLYSSVGRNADALAQYFGE 1115 (1184)
Q Consensus 1097 ~~~~~~~~~~~~l~~yFGE 1115 (1184)
+.+...+-.|+.+..-+..
T Consensus 199 kkV~~sRL~~D~~R~~~k~ 217 (289)
T PF10455_consen 199 KKVENSRLQFDAARANLKN 217 (289)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 8888877778777776755
No 122
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=72.09 E-value=1.5e+02 Score=31.99 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhhCCC
Q 001026 1101 SVGRNADALAQYFGED 1116 (1184)
Q Consensus 1101 ~~~~~~~~l~~yFGEd 1116 (1184)
..++...++.+|||.-
T Consensus 168 r~erli~eiqe~fGy~ 183 (225)
T KOG4848|consen 168 RLERLIREIQEYFGYW 183 (225)
T ss_pred HHHHHHHHHHHHhCcc
Confidence 3456677888999983
No 123
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.95 E-value=1.1e+02 Score=41.15 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHhhhhcCCCCCcceeeeec--cchhchhcccc---cCCcchHHHHHHH
Q 001026 986 IKLKRIMQTILSLGNALNHGTARGSAVGFRL--DSLLKLTDTRA---RNNKMTLMHYLCK 1040 (1184)
Q Consensus 986 ~~L~~lL~~IL~iGN~LN~gt~rG~A~GFkL--~SL~KL~dtKs---~d~k~TLLhflvk 1040 (1184)
..|..|..++..-|==|+++- |-| .-...++.+|- +.+..-||.||..
T Consensus 206 as~~~V~~lLk~~gIDleHNR-------FLILQGEVE~IA~MKPk~~~e~d~GmLEYLED 258 (1293)
T KOG0996|consen 206 ASFKDVTKLLKSHGIDLEHNR-------FLILQGEVEQIAMMKPKAQTENDEGMLEYLED 258 (1293)
T ss_pred ccHHHHHHHHHhcCCCCccce-------eeeehhhHHHHHhcCCCCCCCCcchHHHHHHH
Confidence 468888888888888887762 311 22333444444 4566889999999
No 124
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=71.87 E-value=52 Score=35.98 Aligned_cols=10 Identities=20% Similarity=0.212 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 001026 1079 KLLKEFLSYA 1088 (1184)
Q Consensus 1079 ~~m~~Fl~~a 1088 (1184)
+.|.+|....
T Consensus 61 ~~l~kFs~~l 70 (200)
T cd07639 61 ECLEKFSDGL 70 (200)
T ss_pred HHHHHHHHHH
Confidence 3444444333
No 125
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=71.54 E-value=69 Score=35.45 Aligned_cols=14 Identities=14% Similarity=0.304 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 001026 1131 NFVKMFVLAHEENC 1144 (1184)
Q Consensus 1131 ~F~~~fk~a~ee~~ 1144 (1184)
+--+.|.++.+++.
T Consensus 109 e~kK~FdK~s~~~d 122 (215)
T cd07601 109 TLKELFKAASNDHD 122 (215)
T ss_pred HHHHHHHHHhHHHH
Confidence 33344444444443
No 126
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=71.47 E-value=64 Score=28.82 Aligned_cols=59 Identities=12% Similarity=0.178 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 001026 1079 KLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHE 1141 (1184)
Q Consensus 1079 ~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~e 1141 (1184)
+.|..+..........|+..+.+++..+..|...+..+.. +.|...+.+|...|.+..+
T Consensus 7 ~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~----~af~~~~~~~~~~~~~~~~ 65 (86)
T PF06013_consen 7 EQLRAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAA----DAFQDKFEEWNQAFRQLNE 65 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTS----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHH----HHHHHHHHHHHHHHHHHHH
Confidence 4567777777777788888888888888888766654332 3444444444444444443
No 127
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=71.45 E-value=62 Score=33.19 Aligned_cols=93 Identities=17% Similarity=0.224 Sum_probs=41.4
Q ss_pred eeeeccchhchhcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHH
Q 001026 1012 VGFRLDSLLKLTDTRARNNKMTLMHYLCKIQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGE 1091 (1184)
Q Consensus 1012 ~GFkL~SL~KL~dtKs~d~k~TLLhflvki~L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~ 1091 (1184)
+.|+|+.|+.|...+-...+..|-.-. -.+......|..|..-.......+......+ ....-...+..|+......
T Consensus 3 f~frL~~vL~l~~~~ee~a~~~L~~a~--~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g-~~~~~l~~~~~fl~~L~~~ 79 (146)
T PRK07720 3 YTFRLQKVLELKENEKEKALGEYEEAV--SRFEQVAEKLYELLKQKEDLEQAKEEKLQSG-LSIQEIRHYQQFVTNLERT 79 (146)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHHHHH
Confidence 456666666655443322211111111 1122233344444444444444444333222 2333334566666666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 001026 1092 VRSLALLYSSVGRNAD 1107 (1184)
Q Consensus 1092 l~~L~~~~~~~~~~~~ 1107 (1184)
|......+..++....
T Consensus 80 i~~q~~~v~~~~~~ve 95 (146)
T PRK07720 80 IDHYQLLVMQAREQMN 95 (146)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6665555555554443
No 128
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=71.07 E-value=16 Score=42.67 Aligned_cols=105 Identities=17% Similarity=0.216 Sum_probs=58.5
Q ss_pred eeeeCcEEEecCCCC--CCcchhHHhhccHHHHHHHHhhhCCCCcEEEEEeccCCcCcccccccccCCceEEecCCCCCC
Q 001026 17 LEISERVFVFDCCFT--TDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEG 94 (1184)
Q Consensus 17 tyIT~RIiams~gfP--a~~~~e~~YRN~i~dV~~fL~~~H~~~~y~V~Nl~ee~~~~~~~~~~~~f~~~V~~~P~~~~~ 94 (1184)
..+...|+.| |+. ..++.+..-.-..+++.+.|+. + ++.|+-.+... +|. +-+ +.|
T Consensus 89 ~~~~~eLv~~--G~d~~v~~~~~~~~~is~~el~~~l~~---~-~~vlIDVR~~~----------E~~--~Gh----I~G 146 (314)
T PRK00142 89 VKVRKEIVAL--GLDDDIDPLENVGTYLKPKEVNELLDD---P-DVVFIDMRNDY----------EYE--IGH----FEN 146 (314)
T ss_pred eeeeeeeeec--CCCCCCCccccCCcccCHHHHHHHhcC---C-CeEEEECCCHH----------HHh--cCc----CCC
Confidence 5666778888 574 2233233334556666666653 3 48888887542 121 112 233
Q ss_pred CCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHHHHHHHHhh
Q 001026 95 CPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1184)
Q Consensus 95 ~p~p~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~ 146 (1184)
.-.+++..+..+...+++.+...++.-|||||. |+.| +.++++||.-.|
T Consensus 147 Ai~ip~~~~~~~~~~l~~~~~~~kdk~IvvyC~-~G~R--s~~aa~~L~~~G 195 (314)
T PRK00142 147 AIEPDIETFREFPPWVEENLDPLKDKKVVMYCT-GGIR--CEKASAWMKHEG 195 (314)
T ss_pred CEeCCHHHhhhhHHHHHHhcCCCCcCeEEEECC-CCcH--HHHHHHHHHHcC
Confidence 333556666555544444444456678999996 4556 456667766544
No 129
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=70.53 E-value=66 Score=41.46 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=13.3
Q ss_pred CCcHHHHHHHHHhhcCcCc
Q 001026 328 GLPIEAFAKVQEIFSNVDW 346 (1184)
Q Consensus 328 ~~~~e~f~~~~~~~~~~~~ 346 (1184)
+|=+|||.-|++||+=.-.
T Consensus 246 ELWQEAyrSiEDIhgLm~l 264 (988)
T KOG2072|consen 246 ELWQEAYRSIEDIHGLMKL 264 (988)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455889999998875433
No 130
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=70.42 E-value=36 Score=44.66 Aligned_cols=9 Identities=22% Similarity=0.345 Sum_probs=4.8
Q ss_pred chHHHHHHH
Q 001026 1032 MTLMHYLCK 1040 (1184)
Q Consensus 1032 ~TLLhflvk 1040 (1184)
.+|.|||-+
T Consensus 141 ~NLCqFLpQ 149 (1072)
T KOG0979|consen 141 DNLCQFLPQ 149 (1072)
T ss_pred CchhhhccH
Confidence 355555555
No 131
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=70.35 E-value=90 Score=34.30 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 001026 1049 EMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVST 1128 (1184)
Q Consensus 1049 El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~ 1128 (1184)
+++.+...|.+.+..++.....+.....=...+..=+.+++.+++.++..|+.+.+..+.=+..|-.+ ...+|-.+
T Consensus 136 ~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~----k~~d~k~~ 211 (236)
T PF09325_consen 136 EYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKE----KVKDFKSM 211 (236)
T ss_pred HHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 34444555555555554443332111111223344444555555555555555444443333333322 12344445
Q ss_pred HHHHHHHHHHHHHHHH
Q 001026 1129 LLNFVKMFVLAHEENC 1144 (1184)
Q Consensus 1129 l~~F~~~fk~a~ee~~ 1144 (1184)
|.+|+..-....++..
T Consensus 212 l~~~~~~~i~~~~~~~ 227 (236)
T PF09325_consen 212 LEEYAESQIEYQKKML 227 (236)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555444444444443
No 132
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=69.98 E-value=1.1e+02 Score=33.77 Aligned_cols=53 Identities=21% Similarity=0.122 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1080 LLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLE 1148 (1184)
Q Consensus 1080 ~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e 1148 (1184)
.+++=++.+++++++.+..++..++....|.. .+.++...|.+..+|+.+.++
T Consensus 155 ~~~~~~~kL~~el~~~~~~Le~~~~~~~al~K----------------q~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 155 KLKADLEKLETELEKKQKKLEKAQKKVDALKK----------------QSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHcccHHHHHHHHHHHHHH
Confidence 33444455555555555555555555554433 344455567777766654433
No 133
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=69.84 E-value=50 Score=41.02 Aligned_cols=100 Identities=9% Similarity=0.081 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhCC--CCCCC
Q 001026 1044 KFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGR-NADALAQYFGE--DPARC 1120 (1184)
Q Consensus 1044 ~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~-~~~~l~~yFGE--d~~~~ 1120 (1184)
+.|..+|+.-.+.|+++++.+..-.+..++.|. +.|.+...-.+.+++..+...++++. .|.+...--.+ |++..
T Consensus 41 eK~e~DLKkEIKKLQRlRdQIKtW~ss~dIKDK--~~L~d~RrlIE~~MErfK~vEke~KtKa~SkegL~~~~klDPkEk 118 (575)
T KOG2150|consen 41 EKLESDLKKEIKKLQRLRDQIKTWQSSSDIKDK--DSLLDNRRLIEQRMERFKAVEKEMKTKAFSKEGLSAAEKLDPKEK 118 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccccH--HHHHHHHHHHHHHHHHHHHHHHHhhccccchhhccccccCChHHH
Confidence 457778888888888888888866555445444 45555555555555544433333332 22222111111 44433
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1121 PFEQVVSTLLNFVKMFVLAHEENCR 1145 (1184)
Q Consensus 1121 ~~e~ff~~l~~F~~~fk~a~ee~~k 1145 (1184)
.-.+....|.+.+..+.+.++.+..
T Consensus 119 ek~d~~~wi~~~ideLe~q~d~~ea 143 (575)
T KOG2150|consen 119 EKRDTMDWISNQIDELERQVDSFEA 143 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777888888888887776654
No 134
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=69.80 E-value=1.1e+02 Score=36.98 Aligned_cols=16 Identities=13% Similarity=0.059 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHhhhh
Q 001026 987 KLKRIMQTILSLGNAL 1002 (1184)
Q Consensus 987 ~L~~lL~~IL~iGN~L 1002 (1184)
.=+.+|..+|..-++|
T Consensus 112 ~qr~~La~~L~A~~r~ 127 (420)
T COG4942 112 EQRRRLAEQLAALQRS 127 (420)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3345555566655555
No 135
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.29 E-value=23 Score=42.17 Aligned_cols=28 Identities=36% Similarity=0.419 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1129 LLNFVKMFVLAHEENCRQLEFERKKAEK 1156 (1184)
Q Consensus 1129 l~~F~~~fk~a~ee~~k~~e~ekkk~ek 1156 (1184)
..+|.+..+.++.|..+++++|++|+++
T Consensus 376 ~e~~~K~th~~rqEaaQ~kk~Ek~Ka~k 403 (440)
T KOG2357|consen 376 EEEFLKLTHAARQEAAQEKKAEKKKAEK 403 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666555555555443
No 136
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=68.95 E-value=9 Score=44.80 Aligned_cols=14 Identities=14% Similarity=0.057 Sum_probs=6.6
Q ss_pred hhhccchhhhcCcC
Q 001026 1165 TQKGQSEHLVQNPL 1178 (1184)
Q Consensus 1165 ~~~~e~~~~~q~~~ 1178 (1184)
+|++-+++++++.+
T Consensus 306 eQrK~eeKe~kk~~ 319 (321)
T PF07946_consen 306 EQRKYEEKERKKEQ 319 (321)
T ss_pred HHHHHHHHHHHHhc
Confidence 44455555554433
No 137
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=68.43 E-value=69 Score=35.56 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=7.1
Q ss_pred ccchhchhccccc
Q 001026 1016 LDSLLKLTDTRAR 1028 (1184)
Q Consensus 1016 L~SL~KL~dtKs~ 1028 (1184)
+|.+.|+.|.=.+
T Consensus 49 ~Da~qKvad~A~~ 61 (231)
T cd07643 49 LDAFQKIADAATN 61 (231)
T ss_pred HHHHHHHHHHHhc
Confidence 4556666655443
No 138
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=68.32 E-value=19 Score=39.49 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 001026 1047 AEEMQAISKGLEKVVQELTA 1066 (1184)
Q Consensus 1047 ~~El~~l~k~L~kv~~el~~ 1066 (1184)
.+.|+-++..|.++++.+..
T Consensus 8 ee~l~~~e~~L~Kl~K~~ka 27 (215)
T cd07641 8 EEALDQDRTALQKVKKSVKA 27 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 139
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=67.99 E-value=81 Score=41.07 Aligned_cols=25 Identities=20% Similarity=0.029 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1080 LLKEFLSYAEGEVRSLALLYSSVGR 1104 (1184)
Q Consensus 1080 ~m~~Fl~~a~~~l~~L~~~~~~~~~ 1104 (1184)
+|.+-++++.++.+.|.+.++++.+
T Consensus 597 ~LaeR~e~a~d~Qe~L~~R~~~vl~ 621 (717)
T PF10168_consen 597 KLAERYEEAKDKQEKLMKRVDRVLQ 621 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555544444443
No 140
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=67.83 E-value=1.9e+02 Score=36.11 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=9.6
Q ss_pred Hhhhhc--CCCCCcceeeeec
Q 001026 998 LGNALN--HGTARGSAVGFRL 1016 (1184)
Q Consensus 998 iGN~LN--~gt~rG~A~GFkL 1016 (1184)
+-|-+| .+-.++...||++
T Consensus 395 ~~~~~n~~~~pe~~~~~~~d~ 415 (581)
T KOG0995|consen 395 AENSKNLERNPERAATNGVDL 415 (581)
T ss_pred HHHhccCCcCCccCccccccc
Confidence 456677 3334444555544
No 141
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=67.80 E-value=35 Score=40.27 Aligned_cols=8 Identities=25% Similarity=0.816 Sum_probs=3.5
Q ss_pred HHhhhCCC
Q 001026 1109 LAQYFGED 1116 (1184)
Q Consensus 1109 l~~yFGEd 1116 (1184)
...|..+|
T Consensus 365 ~ee~~a~d 372 (672)
T KOG4722|consen 365 FEEFLAED 372 (672)
T ss_pred HHHHhhhh
Confidence 33444444
No 142
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=67.45 E-value=1.1e+02 Score=32.69 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 001026 1049 EMQAISKGLEKVVQELTA 1066 (1184)
Q Consensus 1049 El~~l~k~L~kv~~el~~ 1066 (1184)
++.+....+..+.+++..
T Consensus 82 e~~~~~~~l~~l~~el~~ 99 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQ 99 (191)
T ss_pred hHHhHHHHHHHHHHHHHH
Confidence 555555555555544443
No 143
>PRK10132 hypothetical protein; Provisional
Probab=67.15 E-value=33 Score=33.85 Aligned_cols=74 Identities=8% Similarity=0.153 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPA 1118 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~ 1118 (1184)
...|..||+.|...++.+.+...... ++..+..++++...++.++..+..++.....++.....+-.|-.+++-
T Consensus 14 ~e~L~~Dl~~L~~~le~ll~~~~~~~--~~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw 87 (108)
T PRK10132 14 VQDIQNDVNQLADSLESVLKSWGSDA--KGEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPW 87 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcH
Confidence 34455555555555555443332221 122366788888899999988888877666677778888888888764
No 144
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=66.84 E-value=69 Score=39.98 Aligned_cols=16 Identities=19% Similarity=0.486 Sum_probs=7.3
Q ss_pred hhcCCC-CCcceeeeec
Q 001026 1001 ALNHGT-ARGSAVGFRL 1016 (1184)
Q Consensus 1001 ~LN~gt-~rG~A~GFkL 1016 (1184)
|+|..+ -+|-..-|.+
T Consensus 94 Yv~~~g~V~G~S~pFqf 110 (546)
T PF07888_consen 94 YVDQKGEVRGASTPFQF 110 (546)
T ss_pred EECCCccEEEecCCccc
Confidence 444433 4555444544
No 145
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=66.52 E-value=79 Score=28.21 Aligned_cols=61 Identities=23% Similarity=0.248 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1044 KFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRN 1105 (1184)
Q Consensus 1044 ~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~ 1105 (1184)
.....+|+.+...|......|..... +...+.|...+..|...+..-++.|.+..+.+...
T Consensus 17 ~~~~~~l~~~~~~l~~~~~~l~~~W~-G~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l~~~ 77 (86)
T PF06013_consen 17 QAQADELQSQLQQLESSIDSLQASWQ-GEAADAFQDKFEEWNQAFRQLNEALEELSQALRQA 77 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGBT-SSTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555544444 55678888888888777766666666555554443
No 146
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=66.52 E-value=25 Score=38.87 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 001026 1046 LAEEMQAISKGLEKVVQELTASE 1068 (1184)
Q Consensus 1046 L~~El~~l~k~L~kv~~el~~s~ 1068 (1184)
|.+.++..+..|.++.+.+....
T Consensus 7 lee~l~~~~~~l~Kl~K~~k~~~ 29 (215)
T cd07604 7 LEESLEGDRVGLQKLKKAVKAIH 29 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555444433
No 147
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=66.39 E-value=60 Score=34.12 Aligned_cols=24 Identities=33% Similarity=0.642 Sum_probs=17.5
Q ss_pred HHHHhhhhcCCCCCcceeeeeccchhc
Q 001026 995 ILSLGNALNHGTARGSAVGFRLDSLLK 1021 (1184)
Q Consensus 995 IL~iGN~LN~gt~rG~A~GFkL~SL~K 1021 (1184)
.-.+|-.||.- ..|.||+=++..+
T Consensus 33 FeEvg~~L~RT---sAACGFRWNs~VR 56 (161)
T TIGR02894 33 FEEVGRALNRT---AAACGFRWNAYVR 56 (161)
T ss_pred HHHHHHHHccc---HHHhcchHHHHHH
Confidence 34578888865 4689999877665
No 148
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=66.39 E-value=98 Score=32.65 Aligned_cols=86 Identities=16% Similarity=0.164 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCH
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPF 1122 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~ 1122 (1184)
+..|.+++.++...+..+..+|........ .+++...+..|++...+++.....+.. |. ..++.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t------------~~el~~~i~~l~~e~~~l~~kL~~l~~--~~--~~vs~ 144 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPT------------NEELREEIEELEEEIEELEEKLEKLRS--GS--KPVSP 144 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------HHHHHHHHHHHHHHHHHHHHHHHHHHh--CC--CCCCH
Confidence 445666666666666666666665544321 133445555555555555555555444 22 12343
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1123 EQVVSTLLNFVKMFVLAHEENCRQLE 1148 (1184)
Q Consensus 1123 e~ff~~l~~F~~~fk~a~ee~~k~~e 1148 (1184)
++ +......|++.+++..+|++
T Consensus 145 ee----~~~~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 145 EE----KEKLEKEYKKWRKEWKKRKR 166 (169)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHH
Confidence 33 33444555555555544443
No 149
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.22 E-value=35 Score=41.79 Aligned_cols=22 Identities=14% Similarity=0.144 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001026 1123 EQVVSTLLNFVKMFVLAHEENC 1144 (1184)
Q Consensus 1123 e~ff~~l~~F~~~fk~a~ee~~ 1144 (1184)
+.++..|.++-..+|+.+.+..
T Consensus 103 ~~yl~kI~eleneLKq~r~el~ 124 (772)
T KOG0999|consen 103 EYYLQKILELENELKQLRQELT 124 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777665544
No 150
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=66.09 E-value=7.7 Score=49.44 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 001026 1078 CKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDP 1117 (1184)
Q Consensus 1078 ~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~ 1117 (1184)
...|+.|+..+..+|..|...+--..+....+..||.++.
T Consensus 281 ~~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~ 320 (619)
T PF03999_consen 281 KQNLKEFIEKKRQEIEELWDKCHYSEEERQAFTPFYIDSY 320 (619)
T ss_dssp ----------------------------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccc
Confidence 4678899999999988888777655555556667776543
No 151
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=66.07 E-value=82 Score=30.53 Aligned_cols=72 Identities=15% Similarity=0.062 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFG 1114 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFG 1114 (1184)
+..+.++++++..+|..+...+...+........-.+.....-+.....+.....+..++...++.|-....
T Consensus 3 ~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~ 74 (117)
T smart00503 3 LDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENL 74 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 445667788888888888777765543211000000011222233344444444555555556665555443
No 152
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=65.88 E-value=73 Score=35.13 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1123 EQVVSTLLNFVKMFVLAHEENCRQLEF 1149 (1184)
Q Consensus 1123 e~ff~~l~~F~~~fk~a~ee~~k~~e~ 1149 (1184)
++++.-+..|+..|....+...||...
T Consensus 90 ~~vl~P~~~~~s~f~~I~~~I~KR~hK 116 (211)
T cd07611 90 DGALLTLDTYLGQFPDIKNRIAKRSRK 116 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777776666555443
No 153
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=65.77 E-value=99 Score=33.83 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHH
Q 001026 1042 QLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYA 1088 (1184)
Q Consensus 1042 ~L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a 1088 (1184)
++..|..-|++|.++...+........+. ...|...|.+|-..+
T Consensus 10 ~~~~l~~~l~kl~K~~~~~~~ag~~~~~a---~~~F~~~L~~~~~~~ 53 (200)
T cd07603 10 DVSELETRLEKLLKLCNGMVDSGKTYVNA---NSLFVNSLNDLSDYF 53 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccc
Confidence 44455555555555555444433322211 134555555554433
No 154
>PHA02562 46 endonuclease subunit; Provisional
Probab=65.56 E-value=62 Score=40.51 Aligned_cols=22 Identities=9% Similarity=0.034 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001026 1123 EQVVSTLLNFVKMFVLAHEENC 1144 (1184)
Q Consensus 1123 e~ff~~l~~F~~~fk~a~ee~~ 1144 (1184)
+..+..+.+-+..++.-.++..
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~ 319 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLD 319 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544444433
No 155
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=65.40 E-value=87 Score=41.99 Aligned_cols=70 Identities=11% Similarity=0.166 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 001026 1046 LAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGE 1115 (1184)
Q Consensus 1046 L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1115 (1184)
+.++++.+..++.+++++++.........+...+....-++++..++..|+.+..+.++..++.+.-|-.
T Consensus 403 ~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~ 472 (1293)
T KOG0996|consen 403 REEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQ 472 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555666666665544332211122234445556666677777776666666666665555543
No 156
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=65.39 E-value=1.3e+02 Score=34.24 Aligned_cols=22 Identities=9% Similarity=0.348 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 001026 1045 FLAEEMQAISKGLEKVVQELTA 1066 (1184)
Q Consensus 1045 ~L~~El~~l~k~L~kv~~el~~ 1066 (1184)
+|...++.+...+..+..++..
T Consensus 91 ~L~~~i~~l~~~i~~l~~~~~~ 112 (264)
T PF06008_consen 91 DLEQFIQNLQDNIQELIEQVES 112 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555544444443
No 157
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=65.09 E-value=1.7e+02 Score=32.18 Aligned_cols=91 Identities=15% Similarity=0.150 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHH
Q 001026 1048 EEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVS 1127 (1184)
Q Consensus 1048 ~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~ 1127 (1184)
..++.+.+.|.+.+..++.....+.....=...++.=+++++.++...+..|+.+.+..++=+..|-.+ ...+|-.
T Consensus 115 ~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~----r~~dfk~ 190 (216)
T cd07627 115 QYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERE----RVEDFRN 190 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 345555566666665555554322111111233444455566666666666666655554444444332 1234444
Q ss_pred HHHHHHHHHHHHHHH
Q 001026 1128 TLLNFVKMFVLAHEE 1142 (1184)
Q Consensus 1128 ~l~~F~~~fk~a~ee 1142 (1184)
.|..|+.......++
T Consensus 191 ~l~~~~e~~ie~~k~ 205 (216)
T cd07627 191 SVEIYLESAIESQKE 205 (216)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444433333
No 158
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=64.92 E-value=1.2e+02 Score=33.32 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELTA 1066 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~~ 1066 (1184)
++....|+..+++.|.++.+.+..
T Consensus 4 l~~~E~ele~l~~~ikkLiK~ck~ 27 (207)
T cd07602 4 LHEHEAELERTNKAIKELIKECKN 27 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544443
No 159
>TIGR02131 phaP_Bmeg polyhydroxyalkanoic acid inclusion protein PhaP. This model describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage (see McCool,G.J. and Cannon,M.C, 1999).
Probab=64.82 E-value=50 Score=33.51 Aligned_cols=16 Identities=13% Similarity=-0.080 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 001026 1095 LALLYSSVGRNADALA 1110 (1184)
Q Consensus 1095 L~~~~~~~~~~~~~l~ 1110 (1184)
|.+.+++..+...++.
T Consensus 83 l~Dqi~EWq~k~~E~~ 98 (165)
T TIGR02131 83 LADQIEEWQDKTHEAL 98 (165)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 160
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=64.74 E-value=13 Score=44.07 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=28.6
Q ss_pred CCcEEEEEecCCCCCchHHHHHHHHHHhhCCCcHHHHHHHHhhhchhhhhcc
Q 001026 118 HQNVLLMHCERGGWPVLAFMLAALLIYRKQFTGEQKTLDMIYKQAPRELLQL 169 (1184)
Q Consensus 118 ~~NVvvvHCk~Gkgr~tg~mia~yLly~~~~~~~~~aL~~~~~pSq~ryl~y 169 (1184)
.+..|+|||..|--| |+.+.+--.|...-| -+|++.|..--+|+++.+
T Consensus 230 ~~~~Vlvh~~dGwDr-t~q~~sL~ql~lDpy---yRTi~GF~~LIeKeW~~f 277 (353)
T PF06602_consen 230 EGSSVLVHCSDGWDR-TSQLSSLAQLLLDPY---YRTIEGFQVLIEKEWISF 277 (353)
T ss_dssp T--EEEEECTTSSSH-HHHHHHHHHHHH-CG---GGSHHHHHHHHHHHTTTT
T ss_pred cCceEEEEcCCCCcc-cHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHhc
Confidence 667889999998888 666544333433333 467776654445666654
No 161
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=64.66 E-value=1.7e+02 Score=35.54 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=28.4
Q ss_pred HhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1064 LTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALA 1110 (1184)
Q Consensus 1064 l~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~ 1110 (1184)
|+...++......|+..+.+|+.....+++.|+...+++.+.+.+.+
T Consensus 245 l~~~~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~ 291 (622)
T COG5185 245 LKLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAM 291 (622)
T ss_pred hcCCCccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445667777777777777777776666666665555544
No 162
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=64.53 E-value=66 Score=39.59 Aligned_cols=67 Identities=13% Similarity=0.133 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-CCC------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1079 KLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGE-DPA------RCPFEQVVSTLLNFVKMFVLAHEENCR 1145 (1184)
Q Consensus 1079 ~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGE-d~~------~~~~e~ff~~l~~F~~~fk~a~ee~~k 1145 (1184)
..+..-...+++++..|++.-+++...|+.|+.-.-| ... +..++.++.=|.+=+..|++-+++..+
T Consensus 88 ~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~ 161 (475)
T PRK10361 88 TRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFG 161 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3444445566677777777777777777777643222 111 223445555555555555555554443
No 163
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=64.44 E-value=79 Score=34.65 Aligned_cols=22 Identities=9% Similarity=-0.026 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001026 1079 KLLKEFLSYAEGEVRSLALLYS 1100 (1184)
Q Consensus 1079 ~~m~~Fl~~a~~~l~~L~~~~~ 1100 (1184)
+++.++++.+..-++.+...+.
T Consensus 15 ~~~~Kl~K~~~~~~~a~~~~~~ 36 (202)
T cd07606 15 DRSLKLYKGCRKYRDALGEAYD 36 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 164
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=63.97 E-value=1.1e+02 Score=33.55 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 001026 1081 LKEFLSYAEGEVRSLA 1096 (1184)
Q Consensus 1081 m~~Fl~~a~~~l~~L~ 1096 (1184)
+++.+..+...++.+.
T Consensus 18 ikkLiK~ck~~i~a~k 33 (207)
T cd07602 18 IKELIKECKNLISATK 33 (207)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444444
No 165
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=63.66 E-value=81 Score=40.79 Aligned_cols=110 Identities=11% Similarity=0.144 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHhhhhcCCCCCcceeeeeccchhchhccccc-CCcchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 001026 986 IKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRAR-NNKMTLMHYLCK--IQLKFLAEEMQAISKGLEKVVQ 1062 (1184)
Q Consensus 986 ~~L~~lL~~IL~iGN~LN~gt~rG~A~GFkL~SL~KL~dtKs~-d~k~TLLhflvk--i~L~~L~~El~~l~k~L~kv~~ 1062 (1184)
..|.+|-.++|-+..||+.. .+.-+.++|.. +.-...+.++.+ ..|..|.+.|+++...|.++..
T Consensus 4 ~ql~qlt~i~~~~~~~L~~~------------i~~~~~~~~a~~~~~~qi~~Wi~k~k~~l~~L~~~l~~ID~ai~~~l~ 71 (683)
T PF08580_consen 4 NQLSQLTSILLPIALYLSES------------IPTAFNAVKALSGAAEQILDWIQKAKDVLYGLREGLEEIDSAISRFLD 71 (683)
T ss_pred HHHHHHHhcccchHHHHHHH------------hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 35666777777777777753 12222233332 122334444444 4566677777777777777777
Q ss_pred HHhhhccCC---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1063 ELTASENDG---EVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNAD 1107 (1184)
Q Consensus 1063 el~~s~~d~---~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~ 1107 (1184)
-++...... ...+.+...+....+.+.+....++..+..++++++
T Consensus 72 lIe~~v~~ie~~q~r~di~~~~~dl~e~vsqm~~~vK~~L~~vK~qve 119 (683)
T PF08580_consen 72 LIEVYVSAIEDLQLREDIANSLFDLIEEVSQMELDVKKTLISVKKQVE 119 (683)
T ss_pred HHHhhccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666642221 111122223333344444333344444544554444
No 166
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=63.58 E-value=78 Score=40.79 Aligned_cols=7 Identities=0% Similarity=0.116 Sum_probs=3.9
Q ss_pred eEEEEEe
Q 001026 194 PIFRIYG 200 (1184)
Q Consensus 194 P~l~Iy~ 200 (1184)
+-++||+
T Consensus 38 ~~l~lyN 44 (651)
T PTZ00399 38 TGLKVNN 44 (651)
T ss_pred CceEEEE
Confidence 3466665
No 167
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.32 E-value=1.5e+02 Score=36.76 Aligned_cols=62 Identities=13% Similarity=0.055 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001026 1044 KFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYF 1113 (1184)
Q Consensus 1044 ~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yF 1113 (1184)
..-.+++..++..|.+.++.+....-+ . .|.+.+...+.+....++++..+....+++++..
T Consensus 390 EqkkEec~kme~qLkkAh~~~ddar~~----p----e~~d~i~~le~e~~~y~de~~kaqaevdrlLeil 451 (654)
T KOG4809|consen 390 EQKKEECSKMEAQLKKAHNIEDDARMN----P----EFADQIKQLEKEASYYRDECGKAQAEVDRLLEIL 451 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhcC----h----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555554443322221 2 2333344444444455555555555555555444
No 168
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=63.20 E-value=1.7e+02 Score=32.74 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1124 QVVSTLLNFVKMFVLAHEENCRQL 1147 (1184)
Q Consensus 1124 ~ff~~l~~F~~~fk~a~ee~~k~~ 1147 (1184)
.++.-+.+|+..|....+...||.
T Consensus 95 ~vl~Pl~~~~s~f~~I~~~I~KR~ 118 (225)
T cd07590 95 TFIEPLKRLRSVFPSVNAAIKRRE 118 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667776666655554443
No 169
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=63.12 E-value=1.1e+02 Score=32.76 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1049 EMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNA 1106 (1184)
Q Consensus 1049 El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~ 1106 (1184)
+++.+.+.+.+.+..+............=.+.+..-+..++..+..++..++.+....
T Consensus 118 ~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~ 175 (218)
T cd07596 118 TLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERL 175 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555444433221222233444445555555555555555544433
No 170
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=62.97 E-value=1.1e+02 Score=40.06 Aligned_cols=71 Identities=11% Similarity=0.181 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPA 1118 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~ 1118 (1184)
++.|.++|.++++.|+.++.+++......+..+. ....+ ....++..|+.++.+++....++...||++.-
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~-~~ea~----~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP 339 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDL-NLEAK----AVLEQIVNVDNQLNELTFREAEISQLYKKDHP 339 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 4556777888888888888777765543322110 11111 12233455666677777777777888888654
No 171
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=62.87 E-value=1.5e+02 Score=32.46 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELTASE 1068 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~~s~ 1068 (1184)
++.+.+++.+|+..|.++.+.+....
T Consensus 4 i~~~E~d~~~Le~~l~Kl~K~~~~~~ 29 (200)
T cd07638 4 LEDVEGDVAELELKLDKLVKLCIGMI 29 (200)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666655555443
No 172
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=62.59 E-value=1.5e+02 Score=32.42 Aligned_cols=16 Identities=19% Similarity=0.655 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 001026 1048 EEMQAISKGLEKVVQE 1063 (1184)
Q Consensus 1048 ~El~~l~k~L~kv~~e 1063 (1184)
.+++.+.+++.++.++
T Consensus 9 ~~f~~~e~~~~kL~k~ 24 (216)
T cd07599 9 KDFKSLEKSLKKLIEQ 24 (216)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 173
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=62.56 E-value=1.6e+02 Score=30.66 Aligned_cols=86 Identities=14% Similarity=0.172 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHH
Q 001026 1051 QAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLL 1130 (1184)
Q Consensus 1051 ~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~ 1130 (1184)
++..+.|..+..+|+...+- --.-...+..-|+.+..+|..|...+.+-++.|++.+.-|.|..+. -..+.+.|.
T Consensus 62 eEetkrLa~ireeLE~l~dP---~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknke--K~~Lv~~L~ 136 (159)
T PF04949_consen 62 EEETKRLAEIREELEVLADP---MRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKE--KAQLVTRLM 136 (159)
T ss_pred HHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 34455666666666644321 1233467788889999999999999999999999999999986432 246677777
Q ss_pred HHHHHHHHHHH
Q 001026 1131 NFVKMFVLAHE 1141 (1184)
Q Consensus 1131 ~F~~~fk~a~e 1141 (1184)
+++..+.+.+-
T Consensus 137 eLv~eSE~~rm 147 (159)
T PF04949_consen 137 ELVSESERLRM 147 (159)
T ss_pred HHHHHHHHHHH
Confidence 77776666543
No 174
>PRK11519 tyrosine kinase; Provisional
Probab=62.47 E-value=1.1e+02 Score=39.97 Aligned_cols=71 Identities=11% Similarity=0.189 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPA 1118 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~ 1118 (1184)
++.|.+++.++++.|+..+++++......+..+ ..... +...+.+..++.++.+++....++...||++.-
T Consensus 269 ~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd-~~~ea----~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP 339 (719)
T PRK11519 269 LAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVD-LPLEA----KAVLDSMVNIDAQLNELTFKEAEISKLYTKEHP 339 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-chHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 345677788888888888777776554332211 11111 222334455666666777777778888888643
No 175
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=62.46 E-value=62 Score=35.77 Aligned_cols=43 Identities=19% Similarity=0.399 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccC----CccchhhHHHHHHH
Q 001026 1042 QLKFLAEEMQAISKGLEKVVQELTASEND----GEVSGNFCKLLKEF 1084 (1184)
Q Consensus 1042 ~L~~L~~El~~l~k~L~kv~~el~~s~~d----~~~~d~f~~~m~~F 1084 (1184)
+.+.+.+-+..+++.+..+.+.+...... -+..|.|.+.+..|
T Consensus 12 q~K~i~~~i~~vEkhFg~lC~~~a~ytRKtArLRDk~D~lak~l~~y 58 (219)
T PF06730_consen 12 QTKFIQDRITNVEKHFGELCQLFAAYTRKTARLRDKGDELAKQLQDY 58 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Confidence 34455556666666666666655543211 12235555555544
No 176
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=62.07 E-value=1.6e+02 Score=31.28 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001026 1041 IQLKFLAEEMQAISKGLEKVVQELTASEN 1069 (1184)
Q Consensus 1041 i~L~~L~~El~~l~k~L~kv~~el~~s~~ 1069 (1184)
-.+..=..+|+++...|..++.|+.....
T Consensus 21 ~~~~~R~~~L~~l~~~L~~L~~EI~y~~t 49 (170)
T PF09548_consen 21 RRLKRRVRQLRELRRALQLLETEIRYGAT 49 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34444556778888888888888876543
No 177
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=62.04 E-value=33 Score=37.62 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1125 VVSTLLNFVKMFVLAHEENCRQL 1147 (1184)
Q Consensus 1125 ff~~l~~F~~~fk~a~ee~~k~~ 1147 (1184)
+...|.+|++.-.+..+|.+|+-
T Consensus 94 l~~~L~~F~kedi~~~Ke~kK~F 116 (207)
T cd07636 94 LITPLEKFRKEQIGAAKEAKKKY 116 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhH
Confidence 34445555444444444444333
No 178
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=62.03 E-value=1.3e+02 Score=38.04 Aligned_cols=18 Identities=17% Similarity=0.202 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001026 1085 LSYAEGEVRSLALLYSSV 1102 (1184)
Q Consensus 1085 l~~a~~~l~~L~~~~~~~ 1102 (1184)
+..+++++..+.+.-..+
T Consensus 411 va~lEkKvqa~~kERDal 428 (961)
T KOG4673|consen 411 VATLEKKVQALTKERDAL 428 (961)
T ss_pred HHHHHHHHHHHHHhHHHH
Confidence 344444554444444333
No 179
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.72 E-value=67 Score=41.06 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=7.3
Q ss_pred HHHHHHHHhhcCc
Q 001026 332 EAFAKVQEIFSNV 344 (1184)
Q Consensus 332 e~f~~~~~~~~~~ 344 (1184)
|...|-++.|.++
T Consensus 13 ~Er~K~~~qF~~L 25 (1118)
T KOG1029|consen 13 EERQKHDAQFGQL 25 (1118)
T ss_pred HHHHHHHHHHhcc
Confidence 4555556666554
No 180
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=61.70 E-value=94 Score=31.68 Aligned_cols=96 Identities=15% Similarity=0.157 Sum_probs=48.7
Q ss_pred cchhHHHHHHHHHHHhhhhcCCCCCcceeeeeccchhchhcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 984 NSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCKIQLKFLAEEMQAISKGLEKVVQE 1063 (1184)
Q Consensus 984 ~S~~L~~lL~~IL~iGN~LN~gt~rG~A~GFkL~SL~KL~dtKs~d~k~TLLhflvki~L~~L~~El~~l~k~L~kv~~e 1063 (1184)
+...|+.+|..++.+.|..+.+... .- +.+ +......|..++..+.-.+.+....
T Consensus 14 ~dr~l~~l~k~~~~~~~~~~~~~~~-~~---------------~e~---------~~~~~e~~l~~l~~~e~~~~k~q~~ 68 (139)
T PF05615_consen 14 DDRPLKRLLKRFLKWCNLSDSILSG-QP---------------SEE---------SQFLYERLLKELAQFEFSILKSQLI 68 (139)
T ss_pred CchhHHHHHHHHHHHHhhhcccccc-cc---------------chh---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999888887765311 10 000 0012233344444444444444333
Q ss_pred HhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1064 LTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGR 1104 (1184)
Q Consensus 1064 l~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~ 1104 (1184)
++........=+.....+..-++.++.++..|+..+..++.
T Consensus 69 ~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~ 109 (139)
T PF05615_consen 69 LEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKR 109 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322211111334455666666666666666666665553
No 181
>PRK02224 chromosome segregation protein; Provisional
Probab=61.60 E-value=1.5e+02 Score=39.43 Aligned_cols=18 Identities=17% Similarity=-0.025 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001026 1080 LLKEFLSYAEGEVRSLAL 1097 (1184)
Q Consensus 1080 ~m~~Fl~~a~~~l~~L~~ 1097 (1184)
.+..-++.+..++..++.
T Consensus 416 ~l~~~~~~l~~~~~~~~~ 433 (880)
T PRK02224 416 ELREERDELREREAELEA 433 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444434333
No 182
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=61.43 E-value=81 Score=35.56 Aligned_cols=8 Identities=13% Similarity=0.185 Sum_probs=3.1
Q ss_pred hhHHHHHH
Q 001026 986 IKLKRIMQ 993 (1184)
Q Consensus 986 ~~L~~lL~ 993 (1184)
.-|+.+|.
T Consensus 8 ~~~~~FL~ 15 (243)
T cd07666 8 EDFKIFLT 15 (243)
T ss_pred hHHHHHHc
Confidence 33444333
No 183
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=60.92 E-value=74 Score=37.42 Aligned_cols=47 Identities=19% Similarity=0.166 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHH
Q 001026 1041 IQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEG 1090 (1184)
Q Consensus 1041 i~L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~ 1090 (1184)
.+++.+..+++.+.+....+.+|++..+.. .+.|.+.++.|.+++..
T Consensus 146 q~lq~~~~~~er~~~~y~~~~qElq~k~t~---~~afn~tikife~q~~~ 192 (464)
T KOG4637|consen 146 QQLQEKSLEYERLYEEYTRTSQELQMKRTA---IEAFNETIKIFEEQCGT 192 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHH
Confidence 345556666677777777777777655432 24566666666655544
No 184
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=60.30 E-value=70 Score=42.45 Aligned_cols=70 Identities=23% Similarity=0.331 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhCC
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCK---LLKEFLSYAEGEVRSLALLYSSVGR-NADALAQYFGE 1115 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~---~m~~Fl~~a~~~l~~L~~~~~~~~~-~~~~l~~yFGE 1115 (1184)
+..+..++..++..|...+.|+...++... .|.. .++.-++..+..++.|+...+++++ -|..+|.-.|-
T Consensus 692 ~~~~~~~~~~~k~~l~~~~~El~~~~~~i~---~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv 765 (1141)
T KOG0018|consen 692 LKYSKLDLEQLKRSLEQNELELQRTESEID---EFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGV 765 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCe
Confidence 334455566666666666666666554321 2222 3334445555555666655555543 45555544443
No 185
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=60.05 E-value=1e+02 Score=40.10 Aligned_cols=83 Identities=22% Similarity=0.147 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHH
Q 001026 1050 MQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTL 1129 (1184)
Q Consensus 1050 l~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l 1129 (1184)
.+.+.+.+++.+.|++..+ ..++.|+.-++.++..|..|++.+....- .+++.+.+.+ +++.+|+=...|
T Consensus 398 ~qK~~kelE~k~sE~~eL~-------r~kE~Lsr~~d~aEs~iadlkEQVDAAlG-AE~MV~qLtd--knlnlEekVklL 467 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELR-------RQKERLSRELDQAESTIADLKEQVDAALG-AEEMVEQLTD--KNLNLEEKVKLL 467 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhc-HHHHHHHHHh--hccCHHHHHHHH
Confidence 3444444444444444332 33556666677777777777666654321 1222233332 355666666666
Q ss_pred HHHHHHHHHHHHH
Q 001026 1130 LNFVKMFVLAHEE 1142 (1184)
Q Consensus 1130 ~~F~~~fk~a~ee 1142 (1184)
.+-+.++..+.+-
T Consensus 468 eetv~dlEalee~ 480 (1243)
T KOG0971|consen 468 EETVGDLEALEEM 480 (1243)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555433
No 186
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=59.96 E-value=1.8e+02 Score=31.89 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001026 1128 TLLNFVKMFVLAHEENC 1144 (1184)
Q Consensus 1128 ~l~~F~~~fk~a~ee~~ 1144 (1184)
.+..|...|+.-|....
T Consensus 90 DleRFT~Lyr~dH~~e~ 106 (207)
T PF05546_consen 90 DLERFTELYRNDHENEQ 106 (207)
T ss_pred HHHHHHHHHHhhhhhHH
Confidence 57788888888775443
No 187
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=59.93 E-value=1.6e+02 Score=38.98 Aligned_cols=23 Identities=9% Similarity=0.030 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1082 KEFLSYAEGEVRSLALLYSSVGR 1104 (1184)
Q Consensus 1082 ~~Fl~~a~~~l~~L~~~~~~~~~ 1104 (1184)
.+=+++++.+|......+.+++.
T Consensus 747 ~e~v~e~~~~Ike~~~~~k~~~~ 769 (1174)
T KOG0933|consen 747 LEEVEESEQQIKEKERALKKCED 769 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333
No 188
>PRK10869 recombination and repair protein; Provisional
Probab=59.89 E-value=65 Score=40.69 Aligned_cols=66 Identities=14% Similarity=0.077 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGE 1115 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1115 (1184)
+..+.+.|+++...|+.+..++....++...+.. -+++.+.++..|..+.++.....++++.|+.+
T Consensus 263 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~-------~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~ 328 (553)
T PRK10869 263 LSGVLDMLEEALIQIQEASDELRHYLDRLDLDPN-------RLAELEQRLSKQISLARKHHVSPEELPQHHQQ 328 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-------HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4455666666666666666666554432211111 14455555555555555555555555555544
No 189
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=59.82 E-value=2.6e+02 Score=30.79 Aligned_cols=31 Identities=6% Similarity=0.124 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1123 EQVVSTLLNFVKMFVLAHEENCRQLEFERKK 1153 (1184)
Q Consensus 1123 e~ff~~l~~F~~~fk~a~ee~~k~~e~ekkk 1153 (1184)
.+....|.+-...+....++.+++...|+|+
T Consensus 144 ~~~~~~v~~~~~ele~~~~~~~r~al~EERr 174 (219)
T PF08397_consen 144 KEALQDVTERQSELEEFEKQSLREALLEERR 174 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555555444444433
No 190
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=59.76 E-value=39 Score=35.62 Aligned_cols=65 Identities=23% Similarity=0.198 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001026 1044 KFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCK--LLKEFLSYAEGEVRSLALLYSSVGRNADALAQY 1112 (1184)
Q Consensus 1044 ~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~--~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~y 1112 (1184)
.....+.+++.+++.++++|+...... |+|.+ +++.-+++++++++++.+.....+..++..+.+
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~q----DeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~ 102 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQ----DEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSK 102 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TT----TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677888888888888888875432 56764 566677777777777777777666666655544
No 191
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=59.55 E-value=2.4e+02 Score=31.83 Aligned_cols=7 Identities=43% Similarity=0.738 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 001026 1051 QAISKGL 1057 (1184)
Q Consensus 1051 ~~l~k~L 1057 (1184)
.++++.+
T Consensus 41 e~~~~~~ 47 (239)
T COG1579 41 EALNKAL 47 (239)
T ss_pred HHHHHHH
Confidence 3333333
No 192
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=59.53 E-value=1.4e+02 Score=32.67 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001026 1042 QLKFLAEEMQAISKGLEKVVQE 1063 (1184)
Q Consensus 1042 ~L~~L~~El~~l~k~L~kv~~e 1063 (1184)
+...|.+.++.+.+++.++...
T Consensus 10 d~~~Le~~l~Kl~K~~~~~~da 31 (200)
T cd07638 10 DVAELELKLDKLVKLCIGMIDA 31 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555566665555555443
No 193
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=59.52 E-value=1.7e+02 Score=33.01 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=11.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH
Q 001026 1031 KMTLMHYLCKIQLKFLAEEMQAI 1053 (1184)
Q Consensus 1031 k~TLLhflvki~L~~L~~El~~l 1053 (1184)
...+-.|+.-+.++.++..|.+|
T Consensus 220 dlffeayvqfmeykgfa~amdal 242 (445)
T KOG2891|consen 220 DLFFEAYVQFMEYKGFAQAMDAL 242 (445)
T ss_pred chhHHHHHHHHHHHhHHHHHHHH
Confidence 33444444445555565555554
No 194
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=59.03 E-value=90 Score=34.54 Aligned_cols=29 Identities=21% Similarity=0.199 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 001026 1087 YAEGEVRSLALLYSSVGRNADALAQYFGE 1115 (1184)
Q Consensus 1087 ~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1115 (1184)
.++.+|+..+..|.+..+.....|.=|-+
T Consensus 146 ~~eeElr~Ae~kfees~E~a~~~M~~i~~ 174 (215)
T cd07593 146 RLEEELRRAKAKYEESSEDVEARMVAIKE 174 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677777777777777766666665555
No 195
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.77 E-value=3.7e+02 Score=33.53 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 001026 1081 LKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPA 1118 (1184)
Q Consensus 1081 m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~ 1118 (1184)
+.+.-....+++++.....+.+++..++|+..||..-.
T Consensus 614 i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp 651 (741)
T KOG4460|consen 614 LREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELP 651 (741)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCC
Confidence 33333344455555566666677777888888887544
No 196
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=58.65 E-value=1.9e+02 Score=31.87 Aligned_cols=30 Identities=13% Similarity=0.015 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1124 QVVSTLLNFVKMFVLAHEENCRQLEFERKK 1153 (1184)
Q Consensus 1124 ~ff~~l~~F~~~fk~a~ee~~k~~e~ekkk 1153 (1184)
+|..-|.+.++.+++.+....|..+.|-|+
T Consensus 84 ~li~pLe~~~e~d~k~i~~~~K~y~ke~k~ 113 (219)
T PF08397_consen 84 ELIQPLEKKLEEDKKYITQLEKDYEKEYKR 113 (219)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344445555555555555555444444433
No 197
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=58.51 E-value=2.3e+02 Score=36.70 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELT 1065 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~ 1065 (1184)
++++..+|..|...+..++.++.
T Consensus 101 lk~~~sQiriLQn~c~~lE~ekq 123 (1265)
T KOG0976|consen 101 LKHHESQIRILQNKCLRLEMEKQ 123 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333
No 198
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=58.31 E-value=2.1e+02 Score=30.75 Aligned_cols=61 Identities=13% Similarity=0.202 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCc-cchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 001026 1046 LAEEMQAISKGLEKVVQELTASENDGE-VSGNFCKLLKEFLSY-AEGEVRSLALLYSSVGRNA 1106 (1184)
Q Consensus 1046 L~~El~~l~k~L~kv~~el~~s~~d~~-~~d~f~~~m~~Fl~~-a~~~l~~L~~~~~~~~~~~ 1106 (1184)
+...++++..+|..+.+.+....+... ....-.+.++.|+.+ ...-+..+...++.+.+.+
T Consensus 15 ~~~~~~~~~~~l~~l~~ai~~~~~~~~~LkGka~dsiK~y~~~vh~pll~~~~~~~~~~~~~l 77 (204)
T PF04740_consen 15 TNSSLKELKEQLESLQKAINQFISSESSLKGKAYDSIKNYFSEVHIPLLQGLILLLEEYQEAL 77 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554444332 333334555555555 3334444444444444444
No 199
>TIGR02677 conserved hypothetical protein TIGR02677. Members of this protein belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).
Probab=58.24 E-value=3.6e+02 Score=33.74 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC--CCCHHHHH-------HHHHHHHHHHHHH
Q 001026 1087 YAEGEVRSLALLYSSVGRNADALAQYFGEDPA--RCPFEQVV-------STLLNFVKMFVLA 1139 (1184)
Q Consensus 1087 ~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~--~~~~e~ff-------~~l~~F~~~fk~a 1139 (1184)
++...++.|...+.++.+++...+.+++.... .+..++|+ ..|.+|+..+.+-
T Consensus 142 ~v~~~~~~L~~~f~~L~~na~df~~~L~~~~~~~~~~~e~Fl~yKd~Li~YL~~Fv~~L~~~ 203 (494)
T TIGR02677 142 EVHRTLRELYGSFESLADNAQAFMADLQRHRPLEVADYEAFLAYKDRLIAYLQDFIVRLVDR 203 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhcChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677888888888888888888876433 22334443 3455555555443
No 200
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=58.20 E-value=2.4e+02 Score=34.45 Aligned_cols=9 Identities=22% Similarity=0.512 Sum_probs=6.7
Q ss_pred chHHHHHHH
Q 001026 1032 MTLMHYLCK 1040 (1184)
Q Consensus 1032 ~TLLhflvk 1040 (1184)
.-|++|+|+
T Consensus 231 k~lfdY~~~ 239 (622)
T COG5185 231 KLLFDYFTE 239 (622)
T ss_pred HHHHHHHHH
Confidence 457788888
No 201
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=58.15 E-value=2.2e+02 Score=33.25 Aligned_cols=65 Identities=11% Similarity=0.026 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1079 KLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARC--PFEQVVSTLLNFVKMFVLAHEEN 1143 (1184)
Q Consensus 1079 ~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~--~~e~ff~~l~~F~~~fk~a~ee~ 1143 (1184)
.++.+-|.+.+..|+.+++.+++++..+...-..+.+..... ....++..+.++.+.+.++..+.
T Consensus 77 ~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L 143 (301)
T PF06120_consen 77 AKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATREL 143 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666677777777777777766655545555533322 12233444556666666555543
No 202
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=57.97 E-value=1.8e+02 Score=32.05 Aligned_cols=10 Identities=30% Similarity=0.697 Sum_probs=4.8
Q ss_pred hhHHHHHHHH
Q 001026 1076 NFCKLLKEFL 1085 (1184)
Q Consensus 1076 ~f~~~m~~Fl 1085 (1184)
.|...|.+|-
T Consensus 41 ~Fa~sL~~f~ 50 (207)
T cd07634 41 KFSQSLQDFQ 50 (207)
T ss_pred HHHHHHHHHH
Confidence 4445555444
No 203
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=57.77 E-value=45 Score=34.49 Aligned_cols=6 Identities=0% Similarity=0.130 Sum_probs=2.3
Q ss_pred HHHHHH
Q 001026 1101 SVGRNA 1106 (1184)
Q Consensus 1101 ~~~~~~ 1106 (1184)
.+.+.+
T Consensus 76 ~~~~~v 81 (194)
T cd07307 76 KLENKV 81 (194)
T ss_pred HHHHHH
Confidence 333333
No 204
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.65 E-value=8.8 Score=43.86 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=15.3
Q ss_pred ceeeeeccchhchhcc--cccCCcch
Q 001026 1010 SAVGFRLDSLLKLTDT--RARNNKMT 1033 (1184)
Q Consensus 1010 ~A~GFkL~SL~KL~dt--Ks~d~k~T 1033 (1184)
..+||.|+.|-+|+-+ |-+++|.-
T Consensus 26 ~~wGf~LeElY~LA~~fyKe~~GKa~ 51 (469)
T KOG3878|consen 26 EKWGFPLEELYRLAFTFYKENSGKAI 51 (469)
T ss_pred HHhCCCHHHHHHHHHHHHHhccCCcc
Confidence 4579999888887643 44444433
No 205
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=57.65 E-value=30 Score=40.83 Aligned_cols=77 Identities=16% Similarity=0.206 Sum_probs=44.9
Q ss_pred hHHHHHHH--H----HHHHHHHHHHHHHHHHHHHHHHHhhhccCC-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1033 TLMHYLCK--I----QLKFLAEEMQAISKGLEKVVQELTASENDG-EVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRN 1105 (1184)
Q Consensus 1033 TLLhflvk--i----~L~~L~~El~~l~k~L~kv~~el~~s~~d~-~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~ 1105 (1184)
.||+|++. . ....|..+.+.|...+.++..+++...+.. ........++...|++-+.+|+.|+.++..++..
T Consensus 130 el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~ 209 (342)
T PF06632_consen 130 ELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKEE 209 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcc
Confidence 46666665 1 122344455555555555555555543321 1123455666677788888999999888887764
Q ss_pred HHHH
Q 001026 1106 ADAL 1109 (1184)
Q Consensus 1106 ~~~l 1109 (1184)
-+.+
T Consensus 210 ~~~~ 213 (342)
T PF06632_consen 210 EKSP 213 (342)
T ss_dssp HHHH
T ss_pred ccch
Confidence 4433
No 206
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=57.58 E-value=97 Score=41.35 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1078 CKLLKEFLSYAEGEVRSLALLYS 1100 (1184)
Q Consensus 1078 ~~~m~~Fl~~a~~~l~~L~~~~~ 1100 (1184)
.+.|..-++.++..|..+++.|.
T Consensus 450 ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 450 IEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444443
No 207
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=57.54 E-value=1.3e+02 Score=33.56 Aligned_cols=9 Identities=22% Similarity=0.158 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 001026 1085 LSYAEGEVR 1093 (1184)
Q Consensus 1085 l~~a~~~l~ 1093 (1184)
|.+++.+++
T Consensus 34 L~e~~kE~~ 42 (230)
T PF10146_consen 34 LEEYRKEME 42 (230)
T ss_pred HHHHHHHHH
Confidence 333333333
No 208
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.45 E-value=2.5e+02 Score=35.00 Aligned_cols=25 Identities=8% Similarity=0.280 Sum_probs=15.7
Q ss_pred HHcchhHHHHHHHH-----HHHhhhhcCCC
Q 001026 982 VRNSIKLKRIMQTI-----LSLGNALNHGT 1006 (1184)
Q Consensus 982 L~~S~~L~~lL~~I-----L~iGN~LN~gt 1006 (1184)
|.++..|+.+|..= ....|+++.|.
T Consensus 214 l~~~~~~~~FL~~~~~~~~~~~~~~~~~~~ 243 (503)
T KOG2273|consen 214 LSNDEDFRLFLESDSKELPTDVNSRFKSGA 243 (503)
T ss_pred cccCHHHHHHhcccccccchhhHHHHhcch
Confidence 67777777776654 35566666554
No 209
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=57.23 E-value=69 Score=30.99 Aligned_cols=24 Identities=13% Similarity=0.237 Sum_probs=15.6
Q ss_pred CCCcEEEEEecCCCCCchHHHHHHHH
Q 001026 117 GHQNVLLMHCERGGWPVLAFMLAALL 142 (1184)
Q Consensus 117 d~~NVvvvHCk~Gkgr~tg~mia~yL 142 (1184)
+.++-+||||..|+.| |...|..|
T Consensus 60 ~~~~~iv~yC~~~~~r--~~~aa~~l 83 (113)
T cd01531 60 SKKDTVVFHCALSQVR--GPSAARKF 83 (113)
T ss_pred CCCCeEEEEeecCCcc--hHHHHHHH
Confidence 4567899999855566 44444443
No 210
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=57.09 E-value=2.4e+02 Score=29.98 Aligned_cols=29 Identities=10% Similarity=0.204 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001026 1041 IQLKFLAEEMQAISKGLEKVVQELTASEN 1069 (1184)
Q Consensus 1041 i~L~~L~~El~~l~k~L~kv~~el~~s~~ 1069 (1184)
-.+..=..+|+++...|..++.|+.....
T Consensus 21 ~~~~~R~~~L~~l~~~l~~L~~EI~Y~~t 49 (170)
T TIGR02833 21 NRFKERPRQLRQLINALQSLEAEIVYGHT 49 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 34444556778888888888888876543
No 211
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.06 E-value=3.9e+02 Score=31.53 Aligned_cols=26 Identities=8% Similarity=0.120 Sum_probs=13.1
Q ss_pred HHHHHHHhhhCCC--CCCCCHHHHHHHH
Q 001026 1104 RNADALAQYFGED--PARCPFEQVVSTL 1129 (1184)
Q Consensus 1104 ~~~~~l~~yFGEd--~~~~~~e~ff~~l 1129 (1184)
.+.++++.|+||. .....+++|+..+
T Consensus 313 ~aieD~i~~L~~~~r~G~i~l~~yLr~V 340 (365)
T KOG2391|consen 313 LAIEDAIYSLGKSLRDGVIDLDQYLRHV 340 (365)
T ss_pred hHHHHHHHHHHHHHhcCeeeHHHHHHHH
Confidence 3455566667662 2234555554433
No 212
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=56.82 E-value=2.7e+02 Score=29.63 Aligned_cols=24 Identities=8% Similarity=0.080 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1086 SYAEGEVRSLALLYSSVGRNADAL 1109 (1184)
Q Consensus 1086 ~~a~~~l~~L~~~~~~~~~~~~~l 1109 (1184)
.+..+++.+|.+.+..+.+..+.+
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444443
No 213
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=56.51 E-value=41 Score=37.07 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1085 LSYAEGEVRSLALLYSSVGRNADALA 1110 (1184)
Q Consensus 1085 l~~a~~~l~~L~~~~~~~~~~~~~l~ 1110 (1184)
++.+.+++..|++..++..+.|+.++
T Consensus 174 Le~~~~~~~al~Kq~e~~~~EydrLl 199 (216)
T KOG1962|consen 174 LEKAQKKVDALKKQSEGLQDEYDRLL 199 (216)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 34444444444444444444444444
No 214
>PRK09039 hypothetical protein; Validated
Probab=56.48 E-value=1.2e+02 Score=35.90 Aligned_cols=22 Identities=18% Similarity=0.495 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 001026 1045 FLAEEMQAISKGLEKVVQELTA 1066 (1184)
Q Consensus 1045 ~L~~El~~l~k~L~kv~~el~~ 1066 (1184)
+|.+++....+.|..+..++..
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAE 64 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 4566677777777777666654
No 215
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=56.28 E-value=2.4e+02 Score=33.35 Aligned_cols=69 Identities=17% Similarity=0.080 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 001026 1044 KFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDP 1117 (1184)
Q Consensus 1044 ~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~ 1117 (1184)
..+.+++.++++.|...+.+|..-.+..+..+. ..-.......+..|+..+.+++.++.++..||+++.
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~-----~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~ 241 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLKYQIKNKVFDP-----KAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQN 241 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 455667777777777777776655443322111 111123344567777777778888888888999953
No 216
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=56.18 E-value=2.3e+02 Score=31.26 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 001026 1047 AEEMQAISKGLEK 1059 (1184)
Q Consensus 1047 ~~El~~l~k~L~k 1059 (1184)
..+++.+.+.+.+
T Consensus 8 E~~le~~~k~ik~ 20 (207)
T cd07636 8 EAELDKTNKFIKE 20 (207)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 217
>PTZ00332 paraflagellar rod protein; Provisional
Probab=55.91 E-value=1.4e+02 Score=36.64 Aligned_cols=32 Identities=13% Similarity=-0.004 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 001026 1086 SYAEGEVRSLALLYSSVGRNADALAQYFGEDP 1117 (1184)
Q Consensus 1086 ~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~ 1117 (1184)
+....+++.++.++.-+...|.-+-.|+.|+.
T Consensus 215 e~~~~k~ql~Erl~~Li~Dk~~iI~~~~~e~~ 246 (589)
T PTZ00332 215 EQMWTKVQLQERLIELVADKFRLIGKCEEENK 246 (589)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhcc
Confidence 33444445445555555556665666666654
No 218
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=55.68 E-value=45 Score=37.83 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhCC
Q 001026 1082 KEFLSYAEGEVRSLALLYSSVGRNA----DALAQYFGE 1115 (1184)
Q Consensus 1082 ~~Fl~~a~~~l~~L~~~~~~~~~~~----~~l~~yFGE 1115 (1184)
+--|++|+++|+.|++.++.|++.. +.+..||-+
T Consensus 116 QLALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvD 153 (305)
T PF15290_consen 116 QLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVD 153 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhh
Confidence 3346778888888887777777543 334455544
No 219
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=55.47 E-value=2.2e+02 Score=31.48 Aligned_cols=55 Identities=13% Similarity=0.153 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1044 KFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYS 1100 (1184)
Q Consensus 1044 ~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~ 1100 (1184)
+....+|+.+.+.|..-+.++...... --+.|...+++.+.....-+..|...+.
T Consensus 45 Kk~rA~LNKl~k~id~~RK~ikk~~~~--P~~~Fe~~~K~l~~~i~~~~~~I~~~ik 99 (215)
T PF07083_consen 45 KKDRAELNKLKKAIDDKRKEIKKEYSK--PIKEFEAKIKELIAPIDEASDKIDEQIK 99 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666555555543322 1244555555555444444444444443
No 220
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=55.31 E-value=2.7e+02 Score=29.68 Aligned_cols=52 Identities=8% Similarity=0.119 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCC-----ccchhhHHHHHHHHHHHHHHHH
Q 001026 1042 QLKFLAEEMQAISKGLEKVVQELTASENDG-----EVSGNFCKLLKEFLSYAEGEVR 1093 (1184)
Q Consensus 1042 ~L~~L~~El~~l~k~L~kv~~el~~s~~d~-----~~~d~f~~~m~~Fl~~a~~~l~ 1093 (1184)
.+..=..+|+++...|..++.|+....... ..++.....+..|+..+.+++.
T Consensus 23 ~~~~R~~~L~~l~~~l~~L~~EI~Y~~tpL~ea~~~i~~~~~~~~~~~f~~~a~~L~ 79 (171)
T PRK08307 23 RYKERPRQLRELKAALQSLEAEIMYGHTPLPEALENIAKQSPKPISTLFQRFSERLE 79 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHccchhHHHHHHHHHHHHH
Confidence 344445677788888888888887654321 1112222345555555555443
No 221
>PRK10404 hypothetical protein; Provisional
Probab=55.31 E-value=71 Score=31.12 Aligned_cols=73 Identities=14% Similarity=0.137 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhCCCCC
Q 001026 1044 KFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSS-VGRNADALAQYFGEDPA 1118 (1184)
Q Consensus 1044 ~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~-~~~~~~~l~~yFGEd~~ 1118 (1184)
..|..||+.|..+++.+.+..... ..+..+..++++...++.++.++..+...+.+ .+......-.|-.+++-
T Consensus 8 ~~l~~dl~~L~~dle~Ll~~~~~~--a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw 81 (101)
T PRK10404 8 TRIDDDLTLLSETLEEVLRSSGDP--ADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPW 81 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 356677777777777665444322 12234677888888888888888877775543 66677777778877653
No 222
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=55.09 E-value=55 Score=43.51 Aligned_cols=17 Identities=12% Similarity=0.219 Sum_probs=6.6
Q ss_pred HcchhHHHHHHHHHHHh
Q 001026 983 RNSIKLKRIMQTILSLG 999 (1184)
Q Consensus 983 ~~S~~L~~lL~~IL~iG 999 (1184)
.++..|..+-+....++
T Consensus 204 mkaT~L~qi~~~~~~~~ 220 (1074)
T KOG0250|consen 204 MKATQLEQITESYSEIM 220 (1074)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 33444444333333333
No 223
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=54.91 E-value=91 Score=35.97 Aligned_cols=78 Identities=15% Similarity=0.189 Sum_probs=44.1
Q ss_pred CchhhhhhhhhhccchHHHHHcchh---HHHHHHHHHHHhhhhcCCCCCcceeeeeccchhchhccccc---CCcchHHH
Q 001026 963 PRVESKLRVFSFKIQFQTQVRNSIK---LKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRAR---NNKMTLMH 1036 (1184)
Q Consensus 963 Prl~~RL~~l~fk~~F~~~L~~S~~---L~~lL~~IL~iGN~LN~gt~rG~A~GFkL~SL~KL~dtKs~---d~k~TLLh 1036 (1184)
|..+.+|..+..+...+.++++.-. --.|=.+.+.+|.-|-..+..|.+.+--=++..+|.++|.. +-+.++|+
T Consensus 57 pa~rakl~~~n~lsKvrG~~k~~~ypq~e~~Lg~~mik~gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~Fld 136 (366)
T KOG1118|consen 57 PASRAKLAMLNTLSKVRGQVKEKGYPQTEGLLGDVMIKHGKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLD 136 (366)
T ss_pred hhhhhHHHHHHHHHHhcccccCCCCccchhHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444555555544444444333211 11234556788888888877766655444677788888864 22455555
Q ss_pred HHHH
Q 001026 1037 YLCK 1040 (1184)
Q Consensus 1037 flvk 1040 (1184)
+|..
T Consensus 137 pL~~ 140 (366)
T KOG1118|consen 137 PLQN 140 (366)
T ss_pred HHHH
Confidence 5544
No 224
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=54.88 E-value=1e+02 Score=34.24 Aligned_cols=28 Identities=11% Similarity=0.055 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 001026 1088 AEGEVRSLALLYSSVGRNADALAQYFGE 1115 (1184)
Q Consensus 1088 a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1115 (1184)
.+.+++..++.|.+..+.....|.-|-+
T Consensus 155 ~eeEl~~Ae~kfe~s~E~a~~~M~~il~ 182 (223)
T cd07592 155 PDEELKQAEEKFEESKELAENSMFNLLE 182 (223)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777777787777766666655555
No 225
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=54.86 E-value=1e+02 Score=35.39 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1121 PFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAE 1155 (1184)
Q Consensus 1121 ~~e~ff~~l~~F~~~fk~a~ee~~k~~e~ekkk~e 1155 (1184)
-+++||..+.+-+..|.+..+-..+++.+++|+++
T Consensus 251 G~ddf~~av~~~vdEy~~~ykp~~Ek~k~~k~~~e 285 (366)
T KOG1532|consen 251 GFDDFFTAVDESVDEYEEEYKPEYEKKKAEKRLAE 285 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 46788887777777777665555444444444433
No 226
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=54.73 E-value=1.7e+02 Score=33.32 Aligned_cols=67 Identities=15% Similarity=0.116 Sum_probs=30.5
Q ss_pred hhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 001026 1075 GNFCKLLKEF---LSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHE 1141 (1184)
Q Consensus 1075 d~f~~~m~~F---l~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~e 1141 (1184)
.-|.+.|++| .......+..-..++.++...+.++...+..+......+.++..|...+..|+....
T Consensus 193 ~lf~~eL~k~~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~~~~~~~~~~r~~~~~~l~~a~~~y~el~~ 262 (296)
T PF13949_consen 193 ALFEEELKKFDPLQNRIQQNLSKQEELLQEIQEANEEFAQSRKSDQEQKERESALQRLEAAYDAYKELSS 262 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3454444443 444444444444455555555555544443322222334555555555555554443
No 227
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=54.66 E-value=61 Score=35.63 Aligned_cols=8 Identities=13% Similarity=0.223 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 001026 1049 EMQAISKG 1056 (1184)
Q Consensus 1049 El~~l~k~ 1056 (1184)
+|+...+-
T Consensus 10 ~le~~~k~ 17 (207)
T cd07635 10 ELERTNRF 17 (207)
T ss_pred HHHHHHHH
Confidence 33333333
No 228
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=54.57 E-value=1.9e+02 Score=32.81 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=15.3
Q ss_pred eeeeccchhchhccccc--CCcchHHHHHHH
Q 001026 1012 VGFRLDSLLKLTDTRAR--NNKMTLMHYLCK 1040 (1184)
Q Consensus 1012 ~GFkL~SL~KL~dtKs~--d~k~TLLhflvk 1040 (1184)
.|=||.-|-|-.++-+. ..+++|...|.+
T Consensus 55 i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~ 85 (338)
T KOG3647|consen 55 IGDKIEELRKARELATDLTQRGTTICEMLSK 85 (338)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 34455555554444332 555666666666
No 229
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=54.46 E-value=81 Score=40.30 Aligned_cols=74 Identities=14% Similarity=0.071 Sum_probs=52.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1075 GNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCP-FEQVVSTLLNFVKMFVLAHEENCRQLE 1148 (1184)
Q Consensus 1075 d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~-~e~ff~~l~~F~~~fk~a~ee~~k~~e 1148 (1184)
+.+.+....+++++......|.+.+..++.....++.-+|+-..... +++.-+.|.+-+..++..+++.+++..
T Consensus 46 ~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~ 120 (660)
T KOG4302|consen 46 QECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKD 120 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888999999999999999999999999998888544222 233334555555666666666554443
No 230
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=54.41 E-value=3.2e+02 Score=30.72 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=21.6
Q ss_pred HHcchhHHHHHHHHHHHhhhhcCCCCC
Q 001026 982 VRNSIKLKRIMQTILSLGNALNHGTAR 1008 (1184)
Q Consensus 982 L~~S~~L~~lL~~IL~iGN~LN~gt~r 1008 (1184)
-.+...|..|-..|..+...|+.-+.+
T Consensus 30 ~~ee~r~~~i~e~i~~Le~~l~~E~k~ 56 (247)
T PF06705_consen 30 EQEEQRFQDIKEQIQKLEKALEAEVKR 56 (247)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888889999999888887643
No 231
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=54.35 E-value=44 Score=35.78 Aligned_cols=20 Identities=45% Similarity=0.355 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001026 1140 HEENCRQLEFERKKAEKAVE 1159 (1184)
Q Consensus 1140 ~ee~~k~~e~ekkk~ekeae 1159 (1184)
.++.+++.|.++||+.|+++
T Consensus 191 F~emLqqkEkeekK~~KeaK 210 (225)
T KOG4848|consen 191 FEEMLQQKEKEEKKAVKEAK 210 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666655543
No 232
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=54.27 E-value=79 Score=30.90 Aligned_cols=73 Identities=21% Similarity=0.243 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhCCCCC
Q 001026 1044 KFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLA-LLYSSVGRNADALAQYFGEDPA 1118 (1184)
Q Consensus 1044 ~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~-~~~~~~~~~~~~l~~yFGEd~~ 1118 (1184)
+++..||+.|...++.+-+.-.... ++..+..+.++..-+++++.++..+. ..+.+.+......=.|-+|++=
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a--~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~PW 84 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLA--GDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENPW 84 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccch--hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCc
Confidence 5677777777777766544322221 22335677788888888888888884 4445677777777788888874
No 233
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=53.93 E-value=2.3e+02 Score=28.07 Aligned_cols=83 Identities=17% Similarity=0.191 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc-CCccchhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhCCCCCCC
Q 001026 1046 LAEEMQAISKGLEKVVQELTASEN-DGEVSGNFCKLLKEFLSYAEGEVRSLAL----LYSSVGRNADALAQYFGEDPARC 1120 (1184)
Q Consensus 1046 L~~El~~l~k~L~kv~~el~~s~~-d~~~~d~f~~~m~~Fl~~a~~~l~~L~~----~~~~~~~~~~~l~~yFGEd~~~~ 1120 (1184)
+.+|++++......+-+......+ +.+..-.|.+.|++.++.-+.-...|+- ..+.+.+..+..+..||-.+ .
T Consensus 10 Vq~e~~~if~~yq~l~~~~~~~~~fd~egK~~~Id~m~~LidkqkiF~~Rl~LSdD~~Ak~m~~qi~~~~~~fG~~~--~ 87 (108)
T PF08855_consen 10 VQDELQDIFEDYQELMQMGSKYGKFDREGKKIHIDKMEELIDKQKIFYKRLELSDDPEAKDMKEQINAQLNQFGYTP--Q 87 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHcCCCc--c
Confidence 445555555555544443333222 1122345666777766666655555542 23457788889999999866 2
Q ss_pred CHHHHHHHHH
Q 001026 1121 PFEQVVSTLL 1130 (1184)
Q Consensus 1121 ~~e~ff~~l~ 1130 (1184)
.+.++|..+.
T Consensus 88 ~l~~~fd~m~ 97 (108)
T PF08855_consen 88 DLSQMFDQMN 97 (108)
T ss_pred hHHHHHHHHH
Confidence 3344444433
No 234
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.89 E-value=1.9e+02 Score=40.58 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHH
Q 001026 1079 KLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFV 1137 (1184)
Q Consensus 1079 ~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk 1137 (1184)
..+..| .....++..+......+......+-.-+++ .-..+.+++-..+.+|-..+.
T Consensus 259 ~~~~~~-~~l~~ql~~l~~~~~~~~~~~~rL~~~i~~-~l~~s~eEL~~ll~~f~~~~~ 315 (1311)
T TIGR00606 259 HNLSKI-MKLDNEIKALKSRKKQMEKDNSELELKMEK-VFQGTDEQLNDLYHNHQRTVR 315 (1311)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCCCHHHHHHHHHHHHHHHH
Confidence 333343 455555566665555555555555543332 222344555555555544443
No 235
>PF07793 DUF1631: Protein of unknown function (DUF1631); InterPro: IPR012434 The members of this family are sequences derived from a group of hypothetical proteins expressed by certain bacterial species. The region concerned is approximately 440 amino acid residues in length.
Probab=53.88 E-value=78 Score=41.27 Aligned_cols=79 Identities=24% Similarity=0.338 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhc
Q 001026 1096 ALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEKAVENEKLKTQKGQSEHLVQ 1175 (1184)
Q Consensus 1096 ~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~ekkk~ekeaekek~k~~~~e~~~~~q 1175 (1184)
..+|.++++.++.+...|.+|.. -++++...|..|+....+..+.+.+ +-.+.++.++|.+.++.....++.
T Consensus 426 ~~l~~~i~~~V~~i~~~f~~d~~--vf~~~l~el~~~~~~~~~~~~~~~~------r~~~~~~g~er~~~Ar~~v~~~l~ 497 (729)
T PF07793_consen 426 DPLYQKIEEVVDRILQEFEGDPA--VFEELLQELEAFLEQERRRAQRNER------RAIEAEEGRERLEQARQQVAQELN 497 (729)
T ss_pred hHHHHHHHHHHHHHHHhccCCHH--HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888887643 2234445555555444333333322 223333334444444444455555
Q ss_pred CcCccCC
Q 001026 1176 NPLKSST 1182 (1184)
Q Consensus 1176 ~~~~~~~ 1182 (1184)
+.+.++.
T Consensus 498 ~~l~~~~ 504 (729)
T PF07793_consen 498 ERLAGRQ 504 (729)
T ss_pred HHhcCCC
Confidence 5555544
No 236
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.58 E-value=74 Score=38.68 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001026 1043 LKFLAEEMQAISKGLEKVVQEL 1064 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el 1064 (1184)
+..+..+-+.|.+++++....+
T Consensus 39 f~~~e~e~~kLqkd~k~y~~av 60 (460)
T KOG3771|consen 39 FNKQEAEGKRLQKDLKNYLDAV 60 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554444333
No 237
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=53.49 E-value=58 Score=41.75 Aligned_cols=48 Identities=21% Similarity=0.229 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHH
Q 001026 1076 NFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFE 1123 (1184)
Q Consensus 1076 ~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e 1123 (1184)
.-...|.--+..-..+|..|.++.+.+.....+|+.-|.-|..++..+
T Consensus 522 kEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~dls~D~ar~Kp~ 569 (861)
T PF15254_consen 522 KENQILGITLRQRDAEIERLRELTRTLQNSMAKLLSDLSVDSARCKPG 569 (861)
T ss_pred hhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCc
Confidence 334566677788888999999999999999999999899998887765
No 238
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=53.46 E-value=3.7e+02 Score=30.17 Aligned_cols=92 Identities=10% Similarity=-0.097 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHH
Q 001026 1047 AEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVV 1126 (1184)
Q Consensus 1047 ~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff 1126 (1184)
..++......+.+-+...............=.+....-+++|+.....|+..|+++-.... .+.-
T Consensus 128 ~re~~qAq~~~~~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~---------------~E~~ 192 (230)
T cd07625 128 MRELIQAQQNTKSKQEAARRLKAKRDINPLKVDEAIRQLEEATKHEHDLSLKLKRITGNML---------------IERK 192 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHH
Confidence 3444444444444444444443322221111223334445566666666666655443332 1222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1127 STLLNFVKMFVLAHEENCRQLEFERKK 1153 (1184)
Q Consensus 1127 ~~l~~F~~~fk~a~ee~~k~~e~ekkk 1153 (1184)
..+.+...+|+.+.+++..+..+-+++
T Consensus 193 rf~~~~~~dl~~~l~ey~~~~ie~erk 219 (230)
T cd07625 193 EWTDWTEEDLQSAIREYTLRKIEYERK 219 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223334455666666666555544433
No 239
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=53.40 E-value=2e+02 Score=31.95 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 001026 1088 AEGEVRSLALLYSSVGRNADALAQYFGED 1116 (1184)
Q Consensus 1088 a~~~l~~L~~~~~~~~~~~~~l~~yFGEd 1116 (1184)
++.+|+..+..|.+..+....+|.=+-+.
T Consensus 159 ae~elr~A~~kf~~~~E~a~~~M~~il~~ 187 (220)
T cd07617 159 AEHELRVAQTEFDRQAEVTRLLLEGISST 187 (220)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56677777777777666666655555443
No 240
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=53.39 E-value=63 Score=36.96 Aligned_cols=46 Identities=17% Similarity=0.108 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhh
Q 001026 1128 TLLNFVKMFVLAHEENCRQLEFERKKAEKAVENEKLKTQKGQSEHL 1173 (1184)
Q Consensus 1128 ~l~~F~~~fk~a~ee~~k~~e~ekkk~ekeaekek~k~~~~e~~~~ 1173 (1184)
-+.+|+..+..+.+|..++...+..|++.+.++.+.++++++.++.
T Consensus 251 G~ddf~~av~~~vdEy~~~ykp~~Ek~k~~k~~~ee~~k~k~le~l 296 (366)
T KOG1532|consen 251 GFDDFFTAVDESVDEYEEEYKPEYEKKKAEKRLAEEERKKKQLEKL 296 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 5778888888888888876666554444443444444444444433
No 241
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=53.36 E-value=1.5e+02 Score=37.30 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 001026 1085 LSYAEGEVRSLALLYSSVGRNADALAQYFGE 1115 (1184)
Q Consensus 1085 l~~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1115 (1184)
+++.+.++..|..+.++......++..|..+
T Consensus 299 L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~ 329 (557)
T COG0497 299 LEEVEERLFALKSLARKYGVTIEDLLEYLDK 329 (557)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3445555555555555555555555555543
No 242
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=53.36 E-value=48 Score=32.89 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=19.0
Q ss_pred cCCCcEEEEEecCCCCCchHHHHHHHHHH
Q 001026 116 LGHQNVLLMHCERGGWPVLAFMLAALLIY 144 (1184)
Q Consensus 116 ~d~~NVvvvHCk~Gkgr~tg~mia~yLly 144 (1184)
.+.+..||+||..++.| +..+|.+|..
T Consensus 65 ~~~~~~vv~yC~~sg~r--s~~aa~~L~~ 91 (121)
T cd01530 65 KKKRRVLIFHCEFSSKR--GPRMARHLRN 91 (121)
T ss_pred cCCCCEEEEECCCcccc--HHHHHHHHHH
Confidence 46778999999755566 5566666655
No 243
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=52.82 E-value=1.1e+02 Score=29.42 Aligned_cols=50 Identities=14% Similarity=0.049 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1096 ALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLE 1148 (1184)
Q Consensus 1096 ~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e 1148 (1184)
+.+|.++....-.|+.|..+-. ..-..|..|.+=+.+++.|++.....++
T Consensus 35 qsLF~~lt~mH~~LL~~i~~~e---e~R~~~E~lQdkL~qi~eAR~AlDalR~ 84 (96)
T PF12210_consen 35 QSLFQTLTAMHPQLLKYIQEQE---EKRVYYEGLQDKLAQIKEARAALDALRE 84 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444311 1123344455555556666555444333
No 244
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=52.78 E-value=1.6e+02 Score=33.04 Aligned_cols=22 Identities=9% Similarity=0.244 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 001026 1046 LAEEMQAISKGLEKVVQELTAS 1067 (1184)
Q Consensus 1046 L~~El~~l~k~L~kv~~el~~s 1067 (1184)
....|.+|...|.++.+.++..
T Consensus 27 ~k~yi~~Le~~Lk~l~k~~~~l 48 (234)
T cd07664 27 KQQQFENLDQQLRKLHASVESL 48 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554443
No 245
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=52.46 E-value=19 Score=43.95 Aligned_cols=79 Identities=16% Similarity=0.074 Sum_probs=48.5
Q ss_pred EEEEEeccCCcCcccccccccCCceEEecCCCCCCCCCC---cHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHH
Q 001026 60 FMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCPLL---TMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAF 136 (1184)
Q Consensus 60 y~V~Nl~ee~~~~~~~~~~~~f~~~V~~~P~~~~~~p~p---~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~ 136 (1184)
-.|.|+++..... ....-..++++++.. +...= -...|-++|.-+..+|..+..+-++|+|..||-.+.|+
T Consensus 320 ~~vI~~s~~~~~~----~~~~~~~~~L~l~i~--~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgV 393 (451)
T PF04179_consen 320 DCVINCSESPTPK----ESWPKSPKYLHLPIP--SSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGV 393 (451)
T ss_pred CEEEEcCCCcccc----cccCCCceEEeCcCC--CCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHH
Confidence 4567776553221 012344556666442 11100 22445567777777887777889999999999987777
Q ss_pred HHHHHHHH
Q 001026 137 MLAALLIY 144 (1184)
Q Consensus 137 mia~yLly 144 (1184)
++|.|..|
T Consensus 394 aLaILc~~ 401 (451)
T PF04179_consen 394 ALAILCKL 401 (451)
T ss_pred HHHHHHHh
Confidence 77776555
No 246
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.26 E-value=3.2e+02 Score=31.26 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001026 1079 KLLKEFLSYAEGEVRSLALLYS 1100 (1184)
Q Consensus 1079 ~~m~~Fl~~a~~~l~~L~~~~~ 1100 (1184)
+.++.-|...+..|...++.|.
T Consensus 83 k~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 83 KKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 247
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=52.13 E-value=1.6e+02 Score=32.82 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHH
Q 001026 1089 EGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKM 1135 (1184)
Q Consensus 1089 ~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~ 1135 (1184)
+.+++..+..|.+..+.+...|.=|=+... +....|.+|+..
T Consensus 156 ~eE~~~A~~kfees~E~a~~~M~n~le~e~-----e~~~~L~~lv~A 197 (223)
T cd07615 156 DEEIRQAVEKFEESKELAERSMFNFLENDV-----EQVSQLSVLIEA 197 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCh-----HHHHHHHHHHHH
Confidence 556666666677666666665555544322 334445555444
No 248
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=52.09 E-value=1.7e+02 Score=36.43 Aligned_cols=24 Identities=4% Similarity=-0.004 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCC
Q 001026 1096 ALLYSSVGRNADALAQYFGEDPAR 1119 (1184)
Q Consensus 1096 ~~~~~~~~~~~~~l~~yFGEd~~~ 1119 (1184)
++.++.++..+.++..-+++....
T Consensus 353 e~eL~el~~~~~~i~~~~~~~~~~ 376 (570)
T COG4477 353 EKELKELESVLDEILENIEAQEVA 376 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhccccc
Confidence 344445555666666666665443
No 249
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=52.01 E-value=2e+02 Score=31.59 Aligned_cols=16 Identities=13% Similarity=0.324 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 001026 1047 AEEMQAISKGLEKVVQ 1062 (1184)
Q Consensus 1047 ~~El~~l~k~L~kv~~ 1062 (1184)
.+.+..+...|..+.+
T Consensus 30 ~~~~~~le~~Lk~l~~ 45 (236)
T PF09325_consen 30 KDYVDKLEEQLKKLYK 45 (236)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444333
No 250
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=51.85 E-value=39 Score=36.03 Aligned_cols=22 Identities=9% Similarity=0.092 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 001026 1044 KFLAEEMQAISKGLEKVVQELT 1065 (1184)
Q Consensus 1044 ~~L~~El~~l~k~L~kv~~el~ 1065 (1184)
+.|.++|...++....+.+.++
T Consensus 84 qeLe~~L~~~~qk~~tl~e~~e 105 (203)
T KOG3433|consen 84 QELESQLATGSQKKATLGESIE 105 (203)
T ss_pred HHHHHHHHHhhhhHhHHHHHHH
Confidence 3344444444444444444333
No 251
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=51.72 E-value=3.6e+02 Score=31.62 Aligned_cols=10 Identities=20% Similarity=0.783 Sum_probs=5.5
Q ss_pred cchHHHHHHH
Q 001026 1031 KMTLMHYLCK 1040 (1184)
Q Consensus 1031 k~TLLhflvk 1040 (1184)
.-.|..|+|+
T Consensus 69 ~Lely~~~c~ 78 (325)
T PF08317_consen 69 MLELYQFSCR 78 (325)
T ss_pred HHHHHHHHHH
Confidence 3455556665
No 252
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=51.67 E-value=3.3e+02 Score=29.06 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001026 1125 VVSTLLNFVKMFVLAHE 1141 (1184)
Q Consensus 1125 ff~~l~~F~~~fk~a~e 1141 (1184)
|+.-|.+|+..|+...+
T Consensus 119 vi~pl~~~~~~~~~i~~ 135 (229)
T PF03114_consen 119 VIDPLKEFLKEFKEIKK 135 (229)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHH
Confidence 34444444444444333
No 253
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=51.67 E-value=1.4e+02 Score=33.18 Aligned_cols=29 Identities=14% Similarity=0.050 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 001026 1088 AEGEVRSLALLYSSVGRNADALAQYFGED 1116 (1184)
Q Consensus 1088 a~~~l~~L~~~~~~~~~~~~~l~~yFGEd 1116 (1184)
++.+|+..+..|.+..+.....|.=|=++
T Consensus 155 ~eeElr~A~~kFees~E~a~~~M~n~l~~ 183 (223)
T cd07613 155 PDEELRQALEKFDESKEIAESSMFNLLEM 183 (223)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 36666777777777666665555544443
No 254
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=51.51 E-value=3.5e+02 Score=29.57 Aligned_cols=10 Identities=20% Similarity=0.056 Sum_probs=4.9
Q ss_pred HHHhhhhcCC
Q 001026 996 LSLGNALNHG 1005 (1184)
Q Consensus 996 L~iGN~LN~g 1005 (1184)
..|-||=|.-
T Consensus 12 ~~iK~YYndI 21 (201)
T PF13851_consen 12 QEIKNYYNDI 21 (201)
T ss_pred HHHHHHHHHH
Confidence 3455555544
No 255
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=51.40 E-value=9.9 Score=42.14 Aligned_cols=90 Identities=12% Similarity=0.109 Sum_probs=46.9
Q ss_pred EEEecCCCCCCcchhHHhhccHHHHHHHHhhhCCCCcEEEEEeccCCcCcccccccccCCceEEecCCCCCCCC--CCcH
Q 001026 23 VFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCP--LLTM 100 (1184)
Q Consensus 23 Iiams~gfPa~~~~e~~YRN~i~dV~~fL~~~H~~~~y~V~Nl~ee~~~~~~~~~~~~f~~~V~~~P~~~~~~p--~p~L 100 (1184)
|||| .|-||.|- . .-...+++||+- + +++-.|||+.+-|-. .. .. ..-.+| ++-.+.. ..-.
T Consensus 14 ~ivm-VGLPArGK--s---~ia~kl~ryL~w-~-g~~~~vFn~g~yRR~--~~---~~--~~~~~f-f~p~n~~~~~~R~ 77 (222)
T PF01591_consen 14 VIVM-VGLPARGK--S---YIARKLCRYLNW-L-GVKTKVFNVGDYRRK--LS---GA--PQDAEF-FDPDNEEAKKLRE 77 (222)
T ss_dssp EEEE-ESSTTSSH--H---HHHHHHHHHHHH-T-T--EEEEEHHHHHHH--HH---SS---S-GGG-GSTT-HHHHHHHH
T ss_pred EEEE-ECCCCCCH--H---HHHHHHHHHHhh-c-CCCcceeecccceec--cc---cc--cccccc-CCCCChHHHHHHH
Confidence 5677 69999753 1 123568899983 3 347999999753211 00 00 001112 0100000 1123
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEecC
Q 001026 101 ETVHHFLRSSESWLSLGHQNVLLMHCER 128 (1184)
Q Consensus 101 ~~l~~~c~~i~~WL~~d~~NVvvvHCk~ 128 (1184)
......+.+|.+||..+..+|++.=-..
T Consensus 78 ~~a~~~l~dl~~~l~~~~G~VAI~DATN 105 (222)
T PF01591_consen 78 QIAKEALEDLIEWLQEEGGQVAIFDATN 105 (222)
T ss_dssp HHHHHHHHHHHHHHHTS--SEEEEES--
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 4466788999999998777788776554
No 256
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=51.33 E-value=2.3e+02 Score=33.20 Aligned_cols=12 Identities=25% Similarity=0.479 Sum_probs=5.9
Q ss_pred HHHHhc-CCCchh
Q 001026 955 FFLELM-KVPRVE 966 (1184)
Q Consensus 955 Fll~L~-~IPrl~ 966 (1184)
++..+. ++|.++
T Consensus 59 ~~~A~~~~~P~Le 71 (325)
T PF08317_consen 59 YVVAGYCTVPMLE 71 (325)
T ss_pred HHHHhccCChHHH
Confidence 444433 666553
No 257
>KOG3080 consensus Nucleolar protein-like/EBNA1-binding protein [RNA processing and modification]
Probab=51.29 E-value=1.1e+02 Score=35.00 Aligned_cols=41 Identities=22% Similarity=0.215 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 001026 1075 GNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGED 1116 (1184)
Q Consensus 1075 d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd 1116 (1184)
|.|...| .|+.+|..-|...--.+.++.-.+..-..||.|=
T Consensus 135 DDf~REl-aFYkQa~~aVl~A~~rL~elgV~~~RP~DYfAEM 175 (328)
T KOG3080|consen 135 DDFAREL-AFYKQALSAVLEAFPRLHELGVPFLRPTDYFAEM 175 (328)
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCccCchHHHHHH
Confidence 5565554 4777777766666666666666777777888873
No 258
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=51.04 E-value=1.8e+02 Score=36.79 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=38.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCC
Q 001026 1075 GNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARC 1120 (1184)
Q Consensus 1075 d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~ 1120 (1184)
+.-.+.+...+..+..+++.|.+.-+..+..|..+++.++|-+.-+
T Consensus 58 e~k~k~~~~llK~yQ~EiD~LtkRsk~aE~afl~vye~L~eaPDP~ 103 (629)
T KOG0963|consen 58 EDKLKMVNPLLKSYQSEIDNLTKRSKFAEAAFLDVYEKLIEAPDPV 103 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhCCCCc
Confidence 3445677888888999999999999999999999999999966543
No 259
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=50.93 E-value=1.9e+02 Score=32.22 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=30.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 001026 1072 EVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFG 1114 (1184)
Q Consensus 1072 ~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFG 1114 (1184)
...|.|.+..+.|+.+.+..|+.+......|-+..++|+.-||
T Consensus 19 ke~D~~Fe~~k~~l~~l~~~Lk~a~~~~~~lv~~rkela~~~~ 61 (218)
T cd07663 19 KEVDEFFEQEKTFLVNYYNRIKDSCAKADKMTRSHKNVADDYI 61 (218)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788888888888888888888777776665555554443
No 260
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=50.86 E-value=5.5e+02 Score=31.87 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1076 NFCKLLKEFLSYAEGEVRSLALLYSS 1101 (1184)
Q Consensus 1076 ~f~~~m~~Fl~~a~~~l~~L~~~~~~ 1101 (1184)
.|...+.......+..++.+.+.+++
T Consensus 309 ~~~plv~~~q~~~e~~le~l~~~~E~ 334 (473)
T PF14643_consen 309 EFLPLVGELQSEFEEELEKLDKSFEE 334 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 261
>PF09903 DUF2130: Uncharacterized protein conserved in bacteria (DUF2130); InterPro: IPR019219 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=50.69 E-value=1.8e+02 Score=33.36 Aligned_cols=68 Identities=13% Similarity=0.079 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1075 GNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFER 1151 (1184)
Q Consensus 1075 d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~ek 1151 (1184)
..|..-|-.+|.++-.++..+.......++....+-.| + ++|-..+..|+..|..+.+++.+..+.-.
T Consensus 155 p~~fi~l~~~LR~~~i~~~~~k~~~~~~~~k~~~l~~f--e-------~~~~~~~~~~~~~~~~~~~~l~ke~~~i~ 222 (267)
T PF09903_consen 155 PQFFIPLITLLRNAAIKSAKYKKEQENKKEKMEDLYNF--E-------EEFRQFIEAIVENFEDMSKDLDKEIKAID 222 (267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777888888888888888887777777777766666 3 23444555566666666666655444433
No 262
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=50.38 E-value=1.9e+02 Score=36.03 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=26.6
Q ss_pred CCchhhhhhhhhhccchHHH--HHcchhHHHHHHHHHHHhhhhcCC
Q 001026 962 VPRVESKLRVFSFKIQFQTQ--VRNSIKLKRIMQTILSLGNALNHG 1005 (1184)
Q Consensus 962 IPrl~~RL~~l~fk~~F~~~--L~~S~~L~~lL~~IL~iGN~LN~g 1005 (1184)
...+..||.+|.-+.+-... ++=|..|...|...-.--+.|+..
T Consensus 101 l~~l~s~l~~~na~~~ga~~~~~~lS~~ledaL~aaq~~ad~l~q~ 146 (593)
T PRK15374 101 LSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEAS 146 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888887766554444 555666666666665555544444
No 263
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=50.35 E-value=1.3e+02 Score=38.21 Aligned_cols=14 Identities=14% Similarity=0.275 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHhh
Q 001026 987 KLKRIMQTILSLGN 1000 (1184)
Q Consensus 987 ~L~~lL~~IL~iGN 1000 (1184)
.|...|.-.|.-+.
T Consensus 248 ~l~~~l~e~lr~~~ 261 (594)
T PF05667_consen 248 RLQKRLAEQLRQAA 261 (594)
T ss_pred HHHHHHHHHHHHhh
Confidence 44444444444443
No 264
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=50.31 E-value=3.4e+02 Score=28.90 Aligned_cols=39 Identities=18% Similarity=0.107 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 001026 1076 NFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFG 1114 (1184)
Q Consensus 1076 ~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFG 1114 (1184)
.-...|..-+...++++++|++.+..|+...+.|-..+.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt 117 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT 117 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334567777777888888888888888877777765443
No 265
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=50.26 E-value=82 Score=30.93 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1046 LAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGR 1104 (1184)
Q Consensus 1046 L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~ 1104 (1184)
+..++++|..++++++..+..+++... .-+..|..-+++..+++..|+.....+++
T Consensus 6 ~~~q~~~l~~~v~~lRed~r~SEdrsa---~SRa~mhrRlDElV~Rv~~lEs~~~~lk~ 61 (112)
T PF07439_consen 6 LHQQLGTLNAEVKELREDIRRSEDRSA---ASRASMHRRLDELVERVTTLESSVSTLKA 61 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 455666777777777777766665432 22334444444444444444444444433
No 266
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=50.16 E-value=2.8e+02 Score=28.20 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 001026 1045 FLAEEMQAISKGLEKVVQELTASE 1068 (1184)
Q Consensus 1045 ~L~~El~~l~k~L~kv~~el~~s~ 1068 (1184)
++.++++.+..+|..+...+....
T Consensus 3 ~F~~~v~~I~~~i~~i~~~v~~l~ 26 (151)
T cd00179 3 EFFEEVEEIRGNIDKISEDVEELQ 26 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666677766666655544
No 267
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=49.92 E-value=2.1e+02 Score=33.92 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1042 QLKFLAEEMQAISKGLEKVVQEL 1064 (1184)
Q Consensus 1042 ~L~~L~~El~~l~k~L~kv~~el 1064 (1184)
.|..+.++|+.++..=.++.++|
T Consensus 196 ~Lr~~l~~l~~l~~eR~~~~~~L 218 (353)
T cd09236 196 ALRVSLEELDRLESRRRRKVERA 218 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666655555454444
No 268
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=49.80 E-value=4.1e+02 Score=34.55 Aligned_cols=7 Identities=29% Similarity=0.368 Sum_probs=3.6
Q ss_pred HHHHHHH
Q 001026 1034 LMHYLCK 1040 (1184)
Q Consensus 1034 LLhflvk 1040 (1184)
+++++.+
T Consensus 169 ~~~~~~k 175 (670)
T KOG0239|consen 169 LLDLALK 175 (670)
T ss_pred HHHHHHH
Confidence 4445555
No 269
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=49.70 E-value=1.2e+02 Score=36.96 Aligned_cols=19 Identities=21% Similarity=0.182 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001026 1127 STLLNFVKMFVLAHEENCR 1145 (1184)
Q Consensus 1127 ~~l~~F~~~fk~a~ee~~k 1145 (1184)
..|..|...|..+.+..+.
T Consensus 335 ~~L~~~Y~~F~~aY~~LL~ 353 (412)
T PF04108_consen 335 EQLCEFYEGFLSAYDSLLL 353 (412)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455566666677766544
No 270
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=49.62 E-value=1.4e+02 Score=37.94 Aligned_cols=12 Identities=17% Similarity=0.421 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 001026 1043 LKFLAEEMQAIS 1054 (1184)
Q Consensus 1043 L~~L~~El~~l~ 1054 (1184)
++.|..+|.++.
T Consensus 260 i~~L~~~l~~l~ 271 (582)
T PF09731_consen 260 IDALQKELAELK 271 (582)
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 271
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=49.53 E-value=2e+02 Score=31.81 Aligned_cols=12 Identities=17% Similarity=0.517 Sum_probs=5.9
Q ss_pred CHHHHHH-HHHHH
Q 001026 1121 PFEQVVS-TLLNF 1132 (1184)
Q Consensus 1121 ~~e~ff~-~l~~F 1132 (1184)
+++.|+. .|..|
T Consensus 93 pl~s~lK~dLr~v 105 (215)
T cd07642 93 PLDSLLKGDLKGV 105 (215)
T ss_pred hHHHHHHHHHHHh
Confidence 4555555 44444
No 272
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=49.46 E-value=3.3e+02 Score=30.04 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001026 1125 VVSTLLNFVKMFVLAHEENCRQ 1146 (1184)
Q Consensus 1125 ff~~l~~F~~~fk~a~ee~~k~ 1146 (1184)
+..-|.+|+++-.+..+|..|+
T Consensus 94 ~~~~L~~F~Kedi~~~Ke~KK~ 115 (207)
T cd07633 94 LIKPLENFRKEQIGFTKERKKK 115 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444444444444444333
No 273
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=49.43 E-value=2.2e+02 Score=34.28 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1079 KLLKEFLSYAEGEVRSLALLYSSVGR 1104 (1184)
Q Consensus 1079 ~~m~~Fl~~a~~~l~~L~~~~~~~~~ 1104 (1184)
+.++.-+...+.+|+.|+++..++.+
T Consensus 44 ~ai~a~~~~~E~~l~~Lq~e~~~l~e 69 (459)
T KOG0288|consen 44 RAIKAKLQEKELELNRLQEENTQLNE 69 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666655544
No 274
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=49.37 E-value=3.5e+02 Score=32.12 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 001026 1042 QLKFLAEEMQAISKGLEKVVQELT 1065 (1184)
Q Consensus 1042 ~L~~L~~El~~l~k~L~kv~~el~ 1065 (1184)
.|+.+.++|+.|+..=.++.++|+
T Consensus 202 ~L~~ll~~l~~lk~eR~~~~~~Lk 225 (356)
T cd09237 202 QLEELLEDLNLIKEERQRVLKDLK 225 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777666666666553
No 275
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=49.36 E-value=3.1e+02 Score=30.72 Aligned_cols=49 Identities=16% Similarity=0.101 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 001026 1087 YAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAH 1140 (1184)
Q Consensus 1087 ~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ 1140 (1184)
.++.+++.++..|.+..+....++.-+-+.. .++...|.+|+..-..-|
T Consensus 167 ~~e~elr~ae~efees~E~a~~~m~~i~~~~-----~e~~~~L~~lv~AQl~Yh 215 (229)
T cd07616 167 AAEQELRITQSEFDRQAEITRLLLEGISSTH-----AHHLRCLNDFVEAQMTYY 215 (229)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-----hHHHHHHHHHHHHHHHHH
Confidence 3577777777778777776666665555421 245666666655433333
No 276
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=49.17 E-value=3.1e+02 Score=32.23 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhhhccC
Q 001026 1054 SKGLEKVVQELTASEND 1070 (1184)
Q Consensus 1054 ~k~L~kv~~el~~s~~d 1070 (1184)
.+.++++.+++......
T Consensus 207 ~ks~e~~~~~l~~~~~~ 223 (320)
T TIGR01834 207 YKSFAALMSDLLARAKS 223 (320)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 44556666666554443
No 277
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=49.08 E-value=2.1e+02 Score=37.94 Aligned_cols=20 Identities=5% Similarity=-0.120 Sum_probs=13.0
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 001026 1120 CPFEQVVSTLLNFVKMFVLA 1139 (1184)
Q Consensus 1120 ~~~e~ff~~l~~F~~~fk~a 1139 (1184)
...++++..|...-+.++.-
T Consensus 949 ~~~~el~kkL~~~neelk~y 968 (1200)
T KOG0964|consen 949 KKSKELMKKLHRCNEELKGY 968 (1200)
T ss_pred CCHHHHHHHHHHHHHHHhhc
Confidence 35677887777766665543
No 278
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=49.06 E-value=72 Score=30.29 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhCCCC
Q 001026 1045 FLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYS-SVGRNADALAQYFGEDP 1117 (1184)
Q Consensus 1045 ~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~-~~~~~~~~l~~yFGEd~ 1117 (1184)
+|.+||..+..+++.+.+.+.....+ ..+..++.+...++.+...+..+..... ++++....+-.|--+++
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~~~--~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P 73 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLAGE--KADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENP 73 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCh
Confidence 46677777777777776665543221 2245566666777777666666554433 34555555556655554
No 279
>PRK04863 mukB cell division protein MukB; Provisional
Probab=48.77 E-value=2.6e+02 Score=39.60 Aligned_cols=27 Identities=11% Similarity=0.006 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1078 CKLLKEFLSYAEGEVRSLALLYSSVGR 1104 (1184)
Q Consensus 1078 ~~~m~~Fl~~a~~~l~~L~~~~~~~~~ 1104 (1184)
...|..-+.+.+.+++.|++..+++++
T Consensus 309 L~rI~diL~ELe~rL~kLEkQaEkA~k 335 (1486)
T PRK04863 309 LVEMARELAELNEAESDLEQDYQAASD 335 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666655555544
No 280
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=48.75 E-value=3.7e+02 Score=28.79 Aligned_cols=7 Identities=14% Similarity=0.187 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 001026 1034 LMHYLCK 1040 (1184)
Q Consensus 1034 LLhflvk 1040 (1184)
++.|++-
T Consensus 31 ~Inflil 37 (184)
T CHL00019 31 LINLSVV 37 (184)
T ss_pred HHHHHHH
Confidence 3444433
No 281
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=48.47 E-value=92 Score=34.41 Aligned_cols=26 Identities=0% Similarity=-0.058 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1085 LSYAEGEVRSLALLYSSVGRNADALA 1110 (1184)
Q Consensus 1085 l~~a~~~l~~L~~~~~~~~~~~~~l~ 1110 (1184)
+......+..+.+....+.....+++
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~l~eIm 124 (214)
T PF04344_consen 99 AHETDAFLQQVEENAQQLRAQLTEIM 124 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33333444444444444444444443
No 282
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=48.37 E-value=95 Score=41.11 Aligned_cols=13 Identities=15% Similarity=-0.015 Sum_probs=6.0
Q ss_pred HHHHHHHhhhCCC
Q 001026 45 GGIVGQLREYFPE 57 (1184)
Q Consensus 45 ~dV~~fL~~~H~~ 57 (1184)
..|..+|++.--|
T Consensus 59 ~~~~~~L~~~~~n 71 (1330)
T KOG0949|consen 59 KFVLSNLRKAGFN 71 (1330)
T ss_pred HHHHHHHHHhccC
Confidence 3344555554433
No 283
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=48.36 E-value=3.4e+02 Score=30.68 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHH
Q 001026 1086 SYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKM 1135 (1184)
Q Consensus 1086 ~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~ 1135 (1184)
..++.+++..+..|.+..+.+...|.=|=+.. .++...|.+|+..
T Consensus 161 ~~l~eE~e~ae~k~e~~~e~~~~~M~~~l~~E-----~e~~~~l~~lv~a 205 (244)
T cd07595 161 DALKDEYEEAELKLEQCRDALATDMYEFLAKE-----AEIASYLIDLIEA 205 (244)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----HHHHHHHHHHHHH
Confidence 34566666667777766665555444443321 2445555555544
No 284
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=48.16 E-value=42 Score=32.55 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCC
Q 001026 100 METVHHFLRSSESWLSLGHQNVLLMHCERGGWP 132 (1184)
Q Consensus 100 L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr 132 (1184)
+..+...+..+..++..+....+|+||..|+.|
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~iv~~C~~~g~r 79 (113)
T cd01443 47 AQSCYQTLPQVYALFSLAGVKLAIFYCGSSQGR 79 (113)
T ss_pred hhHHHHHHHHHHHHhhhcCCCEEEEECCCCCcc
Confidence 333433333333344444556899999876666
No 285
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=47.99 E-value=4.5e+02 Score=29.61 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 001026 1044 KFLAEEMQAISKGLEKVVQELTASE 1068 (1184)
Q Consensus 1044 ~~L~~El~~l~k~L~kv~~el~~s~ 1068 (1184)
.+....+.+|+..|.++.+.++...
T Consensus 25 ~~k~~~ie~LE~qLk~L~k~~~~lv 49 (234)
T cd07665 25 EEKLQEVECEEQRLRKLHAVVETLV 49 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777777777777666554
No 286
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=47.94 E-value=3.4e+02 Score=34.08 Aligned_cols=18 Identities=11% Similarity=0.529 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 001026 1048 EEMQAISKGLEKVVQELT 1065 (1184)
Q Consensus 1048 ~El~~l~k~L~kv~~el~ 1065 (1184)
+++.++++.+++++++++
T Consensus 366 ~~i~~~e~~vd~~~~~Ik 383 (533)
T COG1283 366 KEIRKLEDAVDRLYEEIK 383 (533)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 287
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=47.89 E-value=2.4e+02 Score=31.14 Aligned_cols=15 Identities=20% Similarity=0.038 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 001026 1131 NFVKMFVLAHEENCR 1145 (1184)
Q Consensus 1131 ~F~~~fk~a~ee~~k 1145 (1184)
+--+.|.++.+++..
T Consensus 111 e~kK~FDK~se~y~~ 125 (207)
T cd07634 111 DGKKKFDKESEKYYS 125 (207)
T ss_pred HHccchhHHHhHHHH
Confidence 333344444444433
No 288
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=47.87 E-value=1.9e+02 Score=28.43 Aligned_cols=14 Identities=14% Similarity=-0.180 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 001026 1125 VVSTLLNFVKMFVL 1138 (1184)
Q Consensus 1125 ff~~l~~F~~~fk~ 1138 (1184)
|-++|-+....|.+
T Consensus 57 Fh~ILDd~~~~l~~ 70 (105)
T PF11214_consen 57 FHSILDDTESKLND 70 (105)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344443333333
No 289
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=47.79 E-value=3.6e+02 Score=31.55 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1129 LLNFVKMFVLAHEENCRQLEFER 1151 (1184)
Q Consensus 1129 l~~F~~~fk~a~ee~~k~~e~ek 1151 (1184)
+...+..|+..++..+...+.+.
T Consensus 243 vek~i~EfdiEre~LRAel~ree 265 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELEREE 265 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544444443333
No 290
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=47.77 E-value=4.2e+02 Score=29.56 Aligned_cols=14 Identities=14% Similarity=0.411 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 001026 1049 EMQAISKGLEKVVQ 1062 (1184)
Q Consensus 1049 El~~l~k~L~kv~~ 1062 (1184)
|+++|.+...-+.+
T Consensus 44 e~~eLk~qnkli~K 57 (230)
T PF03904_consen 44 EIQELKRQNKLIIK 57 (230)
T ss_pred HHHHHHHhhHHHHH
Confidence 34444443333333
No 291
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=47.73 E-value=1.5e+02 Score=27.19 Aligned_cols=14 Identities=21% Similarity=0.423 Sum_probs=7.4
Q ss_pred HHHHHHhhhCCCCC
Q 001026 1105 NADALAQYFGEDPA 1118 (1184)
Q Consensus 1105 ~~~~l~~yFGEd~~ 1118 (1184)
.+..++.|-..|+-
T Consensus 7 w~~~~v~~vAkdP~ 20 (74)
T PF15086_consen 7 WASYIVEWVAKDPY 20 (74)
T ss_pred HHHHHHHHHHcChH
Confidence 34444566666553
No 292
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=47.65 E-value=1.5e+02 Score=37.25 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001026 1041 IQLKFLAEEMQAISKGLEKVVQELTAS 1067 (1184)
Q Consensus 1041 i~L~~L~~El~~l~k~L~kv~~el~~s 1067 (1184)
+++..|.+|+.++++.+.+..+++...
T Consensus 113 ~ei~kl~~e~~elr~~~~~~~k~~~~~ 139 (546)
T KOG0977|consen 113 IEITKLREELKELRKKLEKAEKERRGA 139 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhh
Confidence 556667777777777777666555543
No 293
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=47.54 E-value=2.4e+02 Score=31.23 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCC----ccchhhHHHHHHHH
Q 001026 1044 KFLAEEMQAISKGLEKVVQELTASENDG----EVSGNFCKLLKEFL 1085 (1184)
Q Consensus 1044 ~~L~~El~~l~k~L~kv~~el~~s~~d~----~~~d~f~~~m~~Fl 1085 (1184)
..+.+++.+|++.++++.+.+....+.+ .....|...|.+|-
T Consensus 5 ~~~E~d~~~L~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~ 50 (215)
T cd07601 5 NVFEEDALQLSSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYE 50 (215)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566555555555544433221 11245666666663
No 294
>PRK01415 hypothetical protein; Validated
Probab=47.17 E-value=35 Score=38.51 Aligned_cols=51 Identities=18% Similarity=0.086 Sum_probs=32.4
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHHHHHHHHhhC
Q 001026 94 GCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKQ 147 (1184)
Q Consensus 94 ~~p~p~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~~ 147 (1184)
|.-.++++.+-+|...++.++..+.+.-++|+|. |+.| +..+|++|.-.|+
T Consensus 146 gAinip~~~f~e~~~~~~~~~~~~k~k~Iv~yCt-gGiR--s~kAa~~L~~~Gf 196 (247)
T PRK01415 146 SAINPNTKTFKQFPAWVQQNQELLKGKKIAMVCT-GGIR--CEKSTSLLKSIGY 196 (247)
T ss_pred CCCCCChHHHhhhHHHHhhhhhhcCCCeEEEECC-CChH--HHHHHHHHHHcCC
Confidence 4334667666666554444455566678999995 4456 5677778766553
No 295
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.16 E-value=1e+02 Score=36.04 Aligned_cols=14 Identities=7% Similarity=0.055 Sum_probs=7.3
Q ss_pred HHHHHHHhhhCCCC
Q 001026 1104 RNADALAQYFGEDP 1117 (1184)
Q Consensus 1104 ~~~~~l~~yFGEd~ 1117 (1184)
-.++.+++-|.+|.
T Consensus 300 ~l~kq~l~~~A~d~ 313 (365)
T KOG2391|consen 300 PLYKQILECYALDL 313 (365)
T ss_pred hHHHHHHHhhhhhh
Confidence 34555555555543
No 296
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=47.13 E-value=2.3e+02 Score=37.75 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 001026 101 ETVHHFLRSS 110 (1184)
Q Consensus 101 ~~l~~~c~~i 110 (1184)
..+..||.+|
T Consensus 125 ~~vq~lF~SV 134 (1174)
T KOG0933|consen 125 SKVQDLFCSV 134 (1174)
T ss_pred hHHHHHHHHh
Confidence 3344444444
No 297
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=47.05 E-value=5.7e+02 Score=33.87 Aligned_cols=30 Identities=20% Similarity=0.106 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1080 LLKEFLSYAEGEVRSLALLYSSVGRNADAL 1109 (1184)
Q Consensus 1080 ~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l 1109 (1184)
.+...+++++...+.|+...+++++..+++
T Consensus 538 ~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~ 567 (782)
T PRK00409 538 EAEALLKEAEKLKEELEEKKEKLQEEEDKL 567 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 298
>COG4499 Predicted membrane protein [Function unknown]
Probab=46.92 E-value=80 Score=37.50 Aligned_cols=11 Identities=45% Similarity=0.576 Sum_probs=5.3
Q ss_pred hHHHHHHHHHH
Q 001026 987 KLKRIMQTILS 997 (1184)
Q Consensus 987 ~L~~lL~~IL~ 997 (1184)
+|-+..+++|+
T Consensus 278 klPksv~Y~LA 288 (434)
T COG4499 278 KLPKSVQYILA 288 (434)
T ss_pred hCcHHHHHHHH
Confidence 44444444544
No 299
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.81 E-value=4.3e+02 Score=29.02 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhhCCCCCCCC
Q 001026 1075 GNFCKLLKEFLSYAEGEVRSLALLYSSVG------RNADALAQYFGEDPARCP 1121 (1184)
Q Consensus 1075 d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~------~~~~~l~~yFGEd~~~~~ 1121 (1184)
+.|+..|..-+..+..++..|.+.+.+++ ..|..+.....+-+.+..
T Consensus 95 ~q~k~Eiersi~~a~~kie~lkkql~eaKi~r~nrqe~~~l~kvis~~p~RsE 147 (222)
T KOG3215|consen 95 VQKKLEIERSIQKARNKIELLKKQLHEAKIVRLNRQEYSALSKVISDCPARSE 147 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCcch
Confidence 56788888888999999999888877665 467777777777666543
No 300
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=46.69 E-value=1.2e+02 Score=34.58 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1123 EQVVSTLLNFVKMFVLAHEENCRQLEFE 1150 (1184)
Q Consensus 1123 e~ff~~l~~F~~~fk~a~ee~~k~~e~e 1150 (1184)
..|+..|.+.+..+...+++++.+++.|
T Consensus 268 ~~FY~~L~~~~~~l~~~~~~f~~~R~~E 295 (296)
T PF13949_consen 268 LKFYNDLLEILNKLQQKVEDFCNARREE 295 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3566666666666666666666555544
No 301
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=46.67 E-value=1.5e+02 Score=38.72 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 001026 1079 KLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCP 1121 (1184)
Q Consensus 1079 ~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~ 1121 (1184)
+.|+.-+..+++++++|+.+++-++....+- |.|....+
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmeek----G~~~~~~s 366 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEEK----GSDGQAAS 366 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCcccc
Confidence 4444455555555665555555544433322 55554433
No 302
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=46.53 E-value=2e+02 Score=34.97 Aligned_cols=47 Identities=19% Similarity=0.417 Sum_probs=32.0
Q ss_pred cchhHHHHHhcCCCchhhhhhhhhhccchHHHHHcchhHHHHHHHHHH
Q 001026 950 LPDLMFFLELMKVPRVESKLRVFSFKIQFQTQVRNSIKLKRIMQTILS 997 (1184)
Q Consensus 950 ~~ei~Fll~L~~IPrl~~RL~~l~fk~~F~~~L~~S~~L~~lL~~IL~ 997 (1184)
+.|-+||+.|+.+|.-.-++..-+|...=+..| +.+.|..+.++|..
T Consensus 218 fSdYiFLlTlLS~p~~~F~IAFKMFD~dgnG~I-dkeEF~~v~~li~s 264 (489)
T KOG2643|consen 218 FSDYIFLLTLLSIPERNFRIAFKMFDLDGNGEI-DKEEFETVQQLIRS 264 (489)
T ss_pred HHHHHHHHHHHccCcccceeeeeeeecCCCCcc-cHHHHHHHHHHHHh
Confidence 344449999999998877777777766554442 44566666666655
No 303
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=46.22 E-value=1.6e+02 Score=35.56 Aligned_cols=17 Identities=12% Similarity=0.452 Sum_probs=8.5
Q ss_pred CHHHHHHHHHHHHHHHH
Q 001026 1121 PFEQVVSTLLNFVKMFV 1137 (1184)
Q Consensus 1121 ~~e~ff~~l~~F~~~fk 1137 (1184)
.++-||..|.+.-++|.
T Consensus 409 pldlf~D~ivDlenmy~ 425 (590)
T COG5104 409 PLDLFFDFIVDLENMYG 425 (590)
T ss_pred hHHHHHHHHHhHHHHHH
Confidence 34555555555555544
No 304
>PRK04863 mukB cell division protein MukB; Provisional
Probab=46.15 E-value=3.5e+02 Score=38.41 Aligned_cols=31 Identities=23% Similarity=0.040 Sum_probs=16.9
Q ss_pred hhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1111 QYFGEDPARCPFEQVVSTLLNFVKMFVLAHEEN 1143 (1184)
Q Consensus 1111 ~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~ 1143 (1184)
.++|.+ ..+.+++-..+.+|-........+.
T Consensus 428 ~~~~~~--~~SdEeLe~~LenF~aklee~e~qL 458 (1486)
T PRK04863 428 QLCGLP--DLTADNAEDWLEEFQAKEQEATEEL 458 (1486)
T ss_pred HHhCCC--CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433 3455666666666666655554433
No 305
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=46.00 E-value=2.4e+02 Score=31.39 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=42.6
Q ss_pred cchHHHHHHH--HHHHHHHH--------HHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1031 KMTLMHYLCK--IQLKFLAE--------EMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYS 1100 (1184)
Q Consensus 1031 k~TLLhflvk--i~L~~L~~--------El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~ 1100 (1184)
+-.|...|-+ ...+.|.. ++.-++.+|++++-+-....-++..++.|...+..-..+.+.++..|+..++
T Consensus 159 Gd~l~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~ 238 (289)
T COG4985 159 GDPLERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELD 238 (289)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666655 22333333 3444555566555444444445566677776666666666666666666555
Q ss_pred HHHHHHHH
Q 001026 1101 SVGRNADA 1108 (1184)
Q Consensus 1101 ~~~~~~~~ 1108 (1184)
.+...+..
T Consensus 239 ~L~~e~~r 246 (289)
T COG4985 239 ALRAELER 246 (289)
T ss_pred HHhhhhhh
Confidence 55544443
No 306
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=45.99 E-value=1.2e+02 Score=32.64 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001026 1033 TLMHYLCKIQLKFLAEEMQAISKGLEKVVQELTASENDGE-VSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQ 1111 (1184)
Q Consensus 1033 TLLhflvki~L~~L~~El~~l~k~L~kv~~el~~s~~d~~-~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~ 1111 (1184)
+|+-+++-.-+..+..++..+++.++...++.+....... ..+.-.+..++=+++.+++++..+++++.++++.+.+..
T Consensus 110 ~LfL~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 110 ALFLSLVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333445555665556555555544432211100 001111233333444444444444445555555444433
No 307
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=45.97 E-value=60 Score=31.48 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHH
Q 001026 1051 QAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLL 1130 (1184)
Q Consensus 1051 ~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~ 1130 (1184)
+.+..++...++.++..++ ..++..+..|......-+..| ...+.-+|+++... ..+.+.+.
T Consensus 11 ~~~~d~~~~Y~~a~~~~~~-----~~lk~~f~~~~~~~~~~~~~L-----------~~~i~~~Gg~p~~~--gs~~g~~~ 72 (111)
T PF09537_consen 11 KGLHDGIEGYEKAAEKAED-----PELKSLFQEFAQERQQHAEEL-----------QAEIQELGGEPEES--GSFKGALH 72 (111)
T ss_dssp HHHHHHHHHHHHHHHH--S-----HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHTT--H------HHCHHHH
T ss_pred HHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHcCCCcCcc--cCHHHHHH
Confidence 3334444444444444432 344455555544444444444 44445566655432 34555566
Q ss_pred HHHHHHHHHH
Q 001026 1131 NFVKMFVLAH 1140 (1184)
Q Consensus 1131 ~F~~~fk~a~ 1140 (1184)
..+..++.+.
T Consensus 73 r~~~~ik~~~ 82 (111)
T PF09537_consen 73 RAWMDIKSAL 82 (111)
T ss_dssp -TTTHHHHS-
T ss_pred HHHHHHHHHh
Confidence 5555555543
No 308
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=45.96 E-value=3.9e+02 Score=29.77 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=23.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1073 VSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALA 1110 (1184)
Q Consensus 1073 ~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~ 1110 (1184)
..|.|.+.-+.|+.+.+..|+.+...+..|-...++|+
T Consensus 21 d~D~~Fe~~k~~l~~l~~~Lk~~~~~~~~lv~~rkela 58 (219)
T cd07621 21 DVDEFFEQEKNFLVEYHNRIKDATAKADKMTRKHKDVA 58 (219)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777666666644444443
No 309
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=45.46 E-value=1.4e+02 Score=35.99 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELTAS 1067 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~~s 1067 (1184)
+..+.+||.+++.....++..++..
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~L 238 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKL 238 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555544444444444433
No 310
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=45.44 E-value=61 Score=34.32 Aligned_cols=100 Identities=12% Similarity=0.200 Sum_probs=66.1
Q ss_pred eCcEEEecCCCCCCcchhHHhhccHHHHHHHHhhhCCCCcEEEEEeccCCcCcccccccccCCceEEecCCCCCCC----
Q 001026 20 SERVFVFDCCFTTDILEEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGC---- 95 (1184)
Q Consensus 20 T~RIiams~gfPa~~~~e~~YRN~i~dV~~fL~~~H~~~~y~V~Nl~ee~~~~~~~~~~~~f~~~V~~~P~~~~~~---- 95 (1184)
..+|+|.+ |-++.-....|. ...+.++.|++ .+. -.+|++-..+......--...|+--|++||-- |.
T Consensus 21 ~~~l~ATs--~ds~~~l~~kY~-~~~~nl~~L~~--~g~-~V~~~VDat~l~~~~~~~~~~FDrIiFNFPH~--G~~~~~ 92 (166)
T PF10354_consen 21 ATNLVATS--YDSEEELLQKYP-DAEENLEELRE--LGV-TVLHGVDATKLHKHFRLKNQRFDRIIFNFPHV--GGGSED 92 (166)
T ss_pred CCeEEEee--cCchHHHHHhcc-cHHHHHHHHhh--cCC-ccccCCCCCcccccccccCCcCCEEEEeCCCC--CCCccc
Confidence 56899995 776533344454 34577888844 333 56688876655543322235788899999843 31
Q ss_pred ---C-CCcHHHHHHHHHHHHHHHhcCCCcEEEEEecC
Q 001026 96 ---P-LLTMETVHHFLRSSESWLSLGHQNVLLMHCER 128 (1184)
Q Consensus 96 ---p-~p~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~ 128 (1184)
. -..-++|..|++++..-|.. ...|.|-||.+
T Consensus 93 ~~~~i~~nr~Ll~~Ff~Sa~~~L~~-~G~IhVTl~~~ 128 (166)
T PF10354_consen 93 GKRNIRLNRELLRGFFKSASQLLKP-DGEIHVTLKDG 128 (166)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEeCCC
Confidence 0 13457899999999998876 45699999975
No 311
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=45.40 E-value=2.5e+02 Score=31.10 Aligned_cols=52 Identities=19% Similarity=0.333 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhhhcCCCCC----cceeeeeccchhchhc-ccccCCcchHHHHHHH
Q 001026 988 LKRIMQTILSLGNALNHGTAR----GSAVGFRLDSLLKLTD-TRARNNKMTLMHYLCK 1040 (1184)
Q Consensus 988 L~~lL~~IL~iGN~LN~gt~r----G~A~GFkL~SL~KL~d-tKs~d~k~TLLhflvk 1040 (1184)
.+++++.+|.=.+.|+....- --|.|| +..+.+|++ .+..+.+..+++-+|+
T Consensus 26 Yrrvv~ELLVElHLl~~n~~F~yDplfAlGl-vt~fd~fm~GY~Pee~~~~IF~Alc~ 82 (214)
T TIGR03060 26 YRRVVDELLVELHLLSHQSDFKYDPLFALGL-VTVFDRFMEGYRPEEHLDALFDALCN 82 (214)
T ss_pred HHHHHHHHHHHHHHHHhccCceeCchHHhhH-HHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 567777788888888877621 123444 122233322 2334667889999998
No 312
>KOG4722 consensus Zn-finger protein [General function prediction only]
Probab=45.37 E-value=1.4e+02 Score=35.70 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=6.7
Q ss_pred hhhhcCCCCCcceeee
Q 001026 999 GNALNHGTARGSAVGF 1014 (1184)
Q Consensus 999 GN~LN~gt~rG~A~GF 1014 (1184)
|.+....+.+....|+
T Consensus 209 gdi~eee~a~~PGhgi 224 (672)
T KOG4722|consen 209 GDIHEEENAHEPGHGI 224 (672)
T ss_pred hhhhccccCCCCCcch
Confidence 3333333344444454
No 313
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=45.34 E-value=2.6e+02 Score=35.16 Aligned_cols=60 Identities=20% Similarity=0.093 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 001026 1079 KLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAH 1140 (1184)
Q Consensus 1079 ~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ 1140 (1184)
..++.-...+...+..|+..+..++.....+..-- ...+..+.++...|.+.......+.
T Consensus 326 ~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e--~~~k~~~~~l~~~Lqql~~Eae~Ak 385 (522)
T PF05701_consen 326 ERLKEREKEASSEVSSLEAELNKTRSELEAAKAEE--EKAKEAMSELPKALQQLSSEAEEAK 385 (522)
T ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhh--cchhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555444332211 1122234556666666555555554
No 314
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=45.27 E-value=2.3e+02 Score=31.78 Aligned_cols=30 Identities=0% Similarity=0.016 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 001026 1086 SYAEGEVRSLALLYSSVGRNADALAQYFGE 1115 (1184)
Q Consensus 1086 ~~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1115 (1184)
.++......|...++.+....+.++.-+.+
T Consensus 174 ~qty~~a~nidsqLk~l~~dL~~ii~~lN~ 203 (254)
T KOG2196|consen 174 EQTYKMAENIDSQLKRLSEDLKQIIKSLNT 203 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 334444444444444444444444444444
No 315
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=45.24 E-value=1.1e+02 Score=37.93 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001026 1046 LAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQY 1112 (1184)
Q Consensus 1046 L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~y 1112 (1184)
+..||.+++..-+++..+++.... -.+.++..+.+++.++..|+...++++.+++++++-
T Consensus 91 Vs~EL~ele~krqel~seI~~~n~-------kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 91 VSLELTELEVKRQELNSEIEEINT-------KIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 444555555444444444443321 135667777888888888888888888888888753
No 316
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=45.19 E-value=3.8e+02 Score=27.90 Aligned_cols=22 Identities=9% Similarity=0.114 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 001026 1045 FLAEEMQAISKGLEKVVQELTA 1066 (1184)
Q Consensus 1045 ~L~~El~~l~k~L~kv~~el~~ 1066 (1184)
.+..+++.+..=|...+..|..
T Consensus 4 ~f~~~~~~l~~Wl~~~e~~l~~ 25 (213)
T cd00176 4 QFLRDADELEAWLSEKEELLSS 25 (213)
T ss_pred HHHHhHHHHHHHHHHHHHHhcC
Confidence 3444555555555555444443
No 317
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=45.03 E-value=2.8e+02 Score=34.68 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 001026 1049 EMQAISKGLEKVVQELTA 1066 (1184)
Q Consensus 1049 El~~l~k~L~kv~~el~~ 1066 (1184)
++.+|++.|+.+++++..
T Consensus 72 ~~~~l~~~l~~l~~~~~~ 89 (525)
T TIGR02231 72 RLAELRKQIRELEAELRD 89 (525)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 318
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=44.87 E-value=3.2e+02 Score=32.11 Aligned_cols=31 Identities=13% Similarity=0.090 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 001026 1085 LSYAEGEVRSLALLYSSVGRNADALAQYFGE 1115 (1184)
Q Consensus 1085 l~~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1115 (1184)
++.++.++...+..++.+++.++.....|..
T Consensus 116 ~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~ 146 (346)
T PRK10476 116 AASANEQVERARANAKLATRTLERLEPLLAK 146 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3445556666666666666666665555544
No 319
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=44.41 E-value=1.9e+02 Score=32.49 Aligned_cols=56 Identities=5% Similarity=0.173 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 001026 1083 EFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEE 1142 (1184)
Q Consensus 1083 ~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee 1142 (1184)
.=+++++.++...+..|+++.+..++=+..|-++ ..++|=..|..|+.....+.++
T Consensus 166 ~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~e----r~~Dfk~~v~~fles~ie~qke 221 (234)
T cd07665 166 DEIAEWESRVTQYERDFERISATVRKEVIRFEKE----KSKDFKNHIIKYLETLLHSQQQ 221 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555444444333333332 1234444444444444443333
No 320
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=44.40 E-value=4.6e+02 Score=28.93 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001026 1048 EEMQAISKGLEKVVQEL 1064 (1184)
Q Consensus 1048 ~El~~l~k~L~kv~~el 1064 (1184)
.||..+.+.|+++.+++
T Consensus 9 ~ele~~~~~IkkliK~~ 25 (207)
T cd07633 9 QELERTNKFIKDVIKDG 25 (207)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 321
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=44.34 E-value=1.1e+02 Score=35.57 Aligned_cols=57 Identities=19% Similarity=0.178 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1048 EEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGR 1104 (1184)
Q Consensus 1048 ~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~ 1104 (1184)
-|++.|...|+.+...++......+....+.+.|++|+..-++-.+.|+.++.+++.
T Consensus 229 ~e~e~Lke~lqel~~~~e~~~~~~ee~~~~l~~~~~fL~~NkDL~~~l~~e~qkL~~ 285 (307)
T PF15112_consen 229 IEMELLKEKLQELYLQAEEQEVLPEEDSKRLEVLKEFLRNNKDLRSNLQEELQKLDS 285 (307)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence 356666777777766666555444444567788888888776666566665544443
No 322
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=44.32 E-value=98 Score=35.35 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 001026 1087 YAEGEVRSLALLYSSVGRNADALAQYFGED 1116 (1184)
Q Consensus 1087 ~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd 1116 (1184)
...++-..|...+..+......+..+++++
T Consensus 88 tL~~~~~~L~~lL~~~~~~a~~~~~~l~~n 117 (267)
T PF11887_consen 88 TLVDQRQQLDALLLSATGLADTGTDFLADN 117 (267)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444444444444444555543
No 323
>PRK04654 sec-independent translocase; Provisional
Probab=44.25 E-value=1.4e+02 Score=32.88 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 001026 1075 GNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDP 1117 (1184)
Q Consensus 1075 d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~ 1117 (1184)
+++++.|+++.+..+..-..|++..+++++..+.+-.|++.+.
T Consensus 57 ~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~a~~~~~~~~~~~ 99 (214)
T PRK04654 57 EELKRSLQDVQASLREAEDQLRNTQQQVEQGARALHDDVSRDI 99 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 3445555555444444444455555555555555556666653
No 324
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=44.22 E-value=4.4e+02 Score=28.35 Aligned_cols=61 Identities=11% Similarity=0.164 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcc--CCccchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1049 EMQAISKGLEKVVQELTASEN--DGEVSGNFCK-LLKEFLSYAEGEVRSLALLYSSVGRNADAL 1109 (1184)
Q Consensus 1049 El~~l~k~L~kv~~el~~s~~--d~~~~d~f~~-~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l 1109 (1184)
-++.+...+..++......+. .+...+.|.+ .++.-++.+...++.+......+...+..+
T Consensus 69 ~~~~~~~~l~~~~~~~~~vd~~~~a~i~e~~L~~el~~~l~~~~~~~~~~~~~~~~~~~~vsdi 132 (204)
T PF04740_consen 69 LLEEYQEALKFIKDFQSEVDSSSNAIIDEDFLESELKKKLNQLKEQIEDLQDEINSILSSVSDI 132 (204)
T ss_pred HHHHHHHHHHhHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHH
Confidence 334444444444443333332 2334455655 666666666666665555555444444444
No 325
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=44.07 E-value=2.7e+02 Score=31.04 Aligned_cols=9 Identities=11% Similarity=0.276 Sum_probs=3.9
Q ss_pred HHHHHhhhC
Q 001026 1106 ADALAQYFG 1114 (1184)
Q Consensus 1106 ~~~l~~yFG 1114 (1184)
+.+++.||-
T Consensus 108 L~e~L~~Y~ 116 (219)
T cd07621 108 LSDTLRYYM 116 (219)
T ss_pred HHHHHHHHH
Confidence 344444443
No 326
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.05 E-value=4.6e+02 Score=33.33 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 001026 1046 LAEEMQAISKGLEKVVQELTAS 1067 (1184)
Q Consensus 1046 L~~El~~l~k~L~kv~~el~~s 1067 (1184)
+.+++.++....+++.++++.+
T Consensus 83 v~e~v~km~~t~~~l~s~ls~~ 104 (655)
T KOG3758|consen 83 VSEDVEKMANTCDKLKSNLSTS 104 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444444444444433
No 327
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=43.87 E-value=5.6e+02 Score=32.54 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 001026 1079 KLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGED 1116 (1184)
Q Consensus 1079 ~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd 1116 (1184)
+.+.+.-..-+.++..|.+.|+++++.+.+-..-||..
T Consensus 125 ~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a 162 (560)
T PF06160_consen 125 DELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPA 162 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh
Confidence 34444456667888888888998888888888888873
No 328
>smart00721 BAR BAR domain.
Probab=43.82 E-value=3.8e+02 Score=29.20 Aligned_cols=27 Identities=11% Similarity=0.169 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001026 1042 QLKFLAEEMQAISKGLEKVVQELTASE 1068 (1184)
Q Consensus 1042 ~L~~L~~El~~l~k~L~kv~~el~~s~ 1068 (1184)
++..+...++.++..+.++.+.+....
T Consensus 28 ~f~~le~~~~~~~~~~~kl~k~~~~y~ 54 (239)
T smart00721 28 DFEELERRFDTTEAEIEKLQKDTKLYL 54 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455555555555555555555443
No 329
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=43.74 E-value=4e+02 Score=31.49 Aligned_cols=99 Identities=15% Similarity=0.184 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccC------------Ccc--chhhHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 001026 1042 QLKFLAEEMQAISKGLEKVVQELTASEND------------GEV--SGNFCKLLKE----FLSYAEGEVRSLALLYSSVG 1103 (1184)
Q Consensus 1042 ~L~~L~~El~~l~k~L~kv~~el~~s~~d------------~~~--~d~f~~~m~~----Fl~~a~~~l~~L~~~~~~~~ 1103 (1184)
.|..+.++++.|+..=..+..+|....+| +.. .+.|.+.|+. +.+.....+..=+.++.++.
T Consensus 192 ~Lr~~l~~l~~lk~eR~~~~~~Lk~~~dDI~~~ll~~~~~~~~~~~e~l~~~eL~k~f~~~~~~i~~~~~~Q~~ll~~i~ 271 (339)
T cd09235 192 ELRQLMEQVETIKAEREVIESELKSATFDMKSKFLSALAQDGAINEEAISVEELDRVYGPLQKQVQESLSRQESLLANIQ 271 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHhcCCccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666655555555433221 111 1233334433 22222233333333344444
Q ss_pred HHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 001026 1104 RNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAH 1140 (1184)
Q Consensus 1104 ~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ 1140 (1184)
....+++.-+..+.....-+.++..|......|+...
T Consensus 272 ~~n~~f~~~~~~~~~~~~re~~lq~L~~Ay~~y~el~ 308 (339)
T cd09235 272 VAHQEFSKEKQSNSGANEREEVLKDLAAAYDAFMELT 308 (339)
T ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444434443333344556666555555555443
No 330
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=43.73 E-value=2.7e+02 Score=37.47 Aligned_cols=8 Identities=13% Similarity=0.604 Sum_probs=3.4
Q ss_pred HHHHhcCC
Q 001026 955 FFLELMKV 962 (1184)
Q Consensus 955 Fll~L~~I 962 (1184)
|||+-..+
T Consensus 202 lfmkaT~L 209 (1074)
T KOG0250|consen 202 LFMKATQL 209 (1074)
T ss_pred HHHHHhHH
Confidence 44443333
No 331
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=43.44 E-value=3.7e+02 Score=32.62 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 001026 1092 VRSLALLYSSVGRNADALAQYFGEDPAR 1119 (1184)
Q Consensus 1092 l~~L~~~~~~~~~~~~~l~~yFGEd~~~ 1119 (1184)
+..|...+.+++....++...||++.-+
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~ 283 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQ 283 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 4566777777888888888889986543
No 332
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=43.39 E-value=2.6e+02 Score=31.49 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1044 KFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADAL 1109 (1184)
Q Consensus 1044 ~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l 1109 (1184)
..+.+|-+.+...++.+..+++..+ .+.+.++..++..+.++..|+...+++++...++
T Consensus 45 d~~~~e~~~L~~e~~~l~~e~e~L~-------~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 45 DQWDDEKQELLAEYRQLEREIENLE-------VYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666665555443 3556777777777777777777777666554443
No 333
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=43.18 E-value=3.5e+02 Score=31.73 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=6.3
Q ss_pred HHHH-hcCCCchh
Q 001026 955 FFLE-LMKVPRVE 966 (1184)
Q Consensus 955 Fll~-L~~IPrl~ 966 (1184)
|+.+ .++||.++
T Consensus 54 ~v~A~~~~iP~LE 66 (312)
T smart00787 54 YVVAGYCTVPLLE 66 (312)
T ss_pred HHHHhcCCCcHHH
Confidence 4444 55666554
No 334
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=43.14 E-value=1.5e+02 Score=38.51 Aligned_cols=66 Identities=18% Similarity=0.114 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGE 1115 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1115 (1184)
+.+|..|++.++..+.++..|.+... .....|.+-.+..+.+...|...+++++..-..++.=|.|
T Consensus 36 i~~l~~elk~~~~~~~~~~~e~~rl~-------~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyse 101 (717)
T PF09730_consen 36 ILELENELKQLRQELSNVQAENERLS-------QLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSE 101 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 34455555555555555544444332 1223334444444555555555555555544455544443
No 335
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=43.08 E-value=1e+02 Score=36.60 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=7.0
Q ss_pred cCCcchhHHHHHh
Q 001026 947 KIPLPDLMFFLEL 959 (1184)
Q Consensus 947 K~s~~ei~Fll~L 959 (1184)
+++.+-+.|++.|
T Consensus 36 ~~~hepmhWcLnL 48 (558)
T PF15358_consen 36 RMSHEPMHWCLNL 48 (558)
T ss_pred CCCCCccHHHhhh
Confidence 3455555566653
No 336
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=42.99 E-value=4.9e+02 Score=29.20 Aligned_cols=10 Identities=20% Similarity=0.265 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 001026 1128 TLLNFVKMFV 1137 (1184)
Q Consensus 1128 ~l~~F~~~fk 1137 (1184)
.|.+|...|.
T Consensus 129 ~l~~l~~~~~ 138 (247)
T PF06705_consen 129 ELNELQEAFE 138 (247)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 337
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=42.97 E-value=3e+02 Score=26.15 Aligned_cols=32 Identities=6% Similarity=0.120 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1076 NFCKLLKEFLSYAEGEVRSLALLYSSVGRNAD 1107 (1184)
Q Consensus 1076 ~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~ 1107 (1184)
.-...+..|+......+..+...+..++..+.
T Consensus 45 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ 76 (123)
T PF02050_consen 45 AQLRNYQRYISALEQAIQQQQQELERLEQEVE 76 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777666666666666666555444
No 338
>PF13166 AAA_13: AAA domain
Probab=42.95 E-value=4.9e+02 Score=33.74 Aligned_cols=8 Identities=13% Similarity=0.111 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 001026 1091 EVRSLALL 1098 (1184)
Q Consensus 1091 ~l~~L~~~ 1098 (1184)
.+..+...
T Consensus 330 ~~~~l~~~ 337 (712)
T PF13166_consen 330 AIEALKEE 337 (712)
T ss_pred HHHHHHHH
Confidence 33333333
No 339
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.91 E-value=7.8e+02 Score=30.90 Aligned_cols=59 Identities=17% Similarity=0.166 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh-------ccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1046 LAEEMQAISKGLEKVVQELTAS-------ENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGR 1104 (1184)
Q Consensus 1046 L~~El~~l~k~L~kv~~el~~s-------~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~ 1104 (1184)
|..||+.++..|.+++.|.+.. ..++...+.-+-+|+.-+.+.+.+-..|-..|.++++
T Consensus 112 leneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEE 177 (772)
T KOG0999|consen 112 LENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEE 177 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444444332 2222222223344454444444444444555555443
No 340
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=42.91 E-value=1.9e+02 Score=33.72 Aligned_cols=28 Identities=18% Similarity=0.421 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCccc
Q 001026 1047 AEEMQAISKGLEKVVQELTASENDGEVS 1074 (1184)
Q Consensus 1047 ~~El~~l~k~L~kv~~el~~s~~d~~~~ 1074 (1184)
++++..|...|.++.++++.....+.+.
T Consensus 121 ~~~v~~l~e~I~~~l~~~E~LG~eG~Ve 148 (319)
T KOG0796|consen 121 AEKVHELEEKIGKLLEKAEELGEEGNVE 148 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 4566777777777777777777665543
No 341
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=42.82 E-value=3.7e+02 Score=35.45 Aligned_cols=66 Identities=17% Similarity=0.061 Sum_probs=37.7
Q ss_pred HhhhCCCCcEEEEEeccCCcCcccccccccCCceEEecCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCC
Q 001026 51 LREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGG 130 (1184)
Q Consensus 51 L~~~H~~~~y~V~Nl~ee~~~~~~~~~~~~f~~~V~~~P~~~~~~p~p~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gk 130 (1184)
++.+|-. ...||---+... .-|...|...|. +.+. -+.+.||.-++.-|..+- -.|+.||.+-+
T Consensus 22 ~K~KH~R-t~I~gTh~eksa--------~~FWt~ik~~PL--~~~~----VltwKfchllHKvLreGH-psal~es~r~r 85 (980)
T KOG0980|consen 22 PKRKHVR-TIIVGTHDEKSS--------KIFWTTIKRQPL--ENHE----VLTWKFCHLLHKVLREGH-PSALEESQRYK 85 (980)
T ss_pred Cchhhhh-heeeeecccccc--------hhHHHHhhcccc--ccch----HHHHHHHHHHHHHHHcCC-cchhHHHHHHH
Confidence 3456665 255554433321 235555555543 2332 568899999999987653 35667886544
Q ss_pred CC
Q 001026 131 WP 132 (1184)
Q Consensus 131 gr 132 (1184)
++
T Consensus 86 ~~ 87 (980)
T KOG0980|consen 86 KW 87 (980)
T ss_pred HH
Confidence 44
No 342
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=42.76 E-value=5.4e+02 Score=29.05 Aligned_cols=37 Identities=14% Similarity=0.075 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001026 1076 NFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQY 1112 (1184)
Q Consensus 1076 ~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~y 1112 (1184)
.-...|..=++.++.++.+|...+.++.+...++-.+
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~ 125 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKE 125 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667778888888888888777777766544
No 343
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=42.61 E-value=2.7e+02 Score=35.21 Aligned_cols=41 Identities=22% Similarity=0.181 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 001026 1079 KLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPAR 1119 (1184)
Q Consensus 1079 ~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~ 1119 (1184)
..+.+-+..++.++..|+.....+.+....+-.+|+++...
T Consensus 192 ~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~ 232 (629)
T KOG0963|consen 192 QNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAA 232 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHH
Confidence 34556667777888888878887888788888888886543
No 344
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=42.60 E-value=1.4e+02 Score=31.54 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 001026 1089 EGEVRSLALLYSSVGRNADALAQYFGEDPAR 1119 (1184)
Q Consensus 1089 ~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~ 1119 (1184)
.+...+|+++...+...|-+|+.-.+.++..
T Consensus 71 ~d~~~eLkkL~~sll~nfleLl~~l~~~P~~ 101 (162)
T PF05983_consen 71 VDRKKELKKLNKSLLLNFLELLDILSKNPSQ 101 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSS---CCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 4555667777777778888888888887753
No 345
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=42.46 E-value=1.9e+02 Score=32.94 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 001026 1045 FLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFG 1114 (1184)
Q Consensus 1045 ~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFG 1114 (1184)
.|.+.++++.+.-.++..+|.. .+.-...+..-+..++..|+.|+..+..++..++....-.+
T Consensus 71 ~l~e~c~~lek~rqKlshdlq~-------Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 71 SLMESCENLEKTRQKLSHDLQV-------KESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAAS 133 (307)
T ss_pred hHHHHHHHHHHHHHHhhHHHhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444444444444433 23345677788889999999999999888887776655444
No 346
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=42.39 E-value=7.3e+02 Score=30.39 Aligned_cols=84 Identities=12% Similarity=0.104 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC---CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 001026 1045 FLAEEMQAISKGLEKVVQELTASEND---GEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCP 1121 (1184)
Q Consensus 1045 ~L~~El~~l~k~L~kv~~el~~s~~d---~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~ 1121 (1184)
.+...++.++...+.+.+.+.....- .+.+..-.+.++.|++.|...++.-...-+.+.+...+
T Consensus 464 s~Ls~lq~vkeq~qvInq~maeLatiPyLqD~sqqd~ellqslM~da~dtLeG~rs~kErvwn~iqK------------- 530 (569)
T PF15015_consen 464 SLLSQLQRVKEQSQVINQAMAELATIPYLQDISQQDAELLQSLMADAMDTLEGRRSDKERVWNTIQK------------- 530 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccccccchhhHHHHHHHHHHHHHHhhccccchHHHHHHHHH-------------
Confidence 34455555555555555544433321 11122223346666666655554433333333332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1122 FEQVVSTLLNFVKMFVLAHEENCR 1145 (1184)
Q Consensus 1122 ~e~ff~~l~~F~~~fk~a~ee~~k 1145 (1184)
.+.+++|+-+.+..+....|
T Consensus 531 ----vg~ie~flyq~ed~~lk~kk 550 (569)
T PF15015_consen 531 ----VGRIEDFLYQLEDSFLKTKK 550 (569)
T ss_pred ----HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666655544333
No 347
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=42.38 E-value=2.6e+02 Score=32.41 Aligned_cols=32 Identities=3% Similarity=-0.109 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 001026 1084 FLSYAEGEVRSLALLYSSVGRNADALAQYFGE 1115 (1184)
Q Consensus 1084 Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1115 (1184)
-+..++..++..+..+..+++.++.....|..
T Consensus 109 ~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~ 140 (334)
T TIGR00998 109 KVESLKIKLEQAREKLLQAELDLRRRVPLFKK 140 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHC
Confidence 34455555555555566666666665555544
No 348
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=42.24 E-value=5.4e+02 Score=28.83 Aligned_cols=74 Identities=15% Similarity=0.105 Sum_probs=46.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1029 NNKMTLMHYLCKIQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADA 1108 (1184)
Q Consensus 1029 d~k~TLLhflvki~L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~ 1108 (1184)
.+...+++.+.....+.....++.+.+.+..+++++....+. ..-.-+...+..+..+...+....+.+.+
T Consensus 106 ~~~~~ll~~il~~~~~~~~~~l~~l~~~l~~le~~~~~~~~~---------~~~~~l~~l~~~l~~l~~~l~~~~~~l~~ 176 (292)
T PF01544_consen 106 SSPEDLLYAILDEIVDDYFEVLEELEDELDELEDELDDRPSN---------ELLRELFDLRRELSRLRRSLSPLREVLQR 176 (292)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHTTTH---------HHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccch---------hhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344667777777667777788888888888888888322211 11111233556666666666666666666
Q ss_pred HHh
Q 001026 1109 LAQ 1111 (1184)
Q Consensus 1109 l~~ 1111 (1184)
++.
T Consensus 177 ~~~ 179 (292)
T PF01544_consen 177 LLR 179 (292)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 349
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=42.21 E-value=70 Score=28.49 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1045 FLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLL-KEFLSYAEGEVRSLALLYSSVGRNAD 1107 (1184)
Q Consensus 1045 ~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m-~~Fl~~a~~~l~~L~~~~~~~~~~~~ 1107 (1184)
++..|+..|.+.+.++..++........ +..|..+. .+.++.-+.++..+...+..+.+...
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~-n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLS-NENFVEKAPEEVVEKEREKLEELEEELEKLEEALE 63 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHC-STTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHc-CccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888877776543211 12333221 12233444445555555555444443
No 350
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=42.20 E-value=34 Score=36.28 Aligned_cols=21 Identities=24% Similarity=0.059 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 001026 1129 LLNFVKMFVLAHEENCRQLEF 1149 (1184)
Q Consensus 1129 l~~F~~~fk~a~ee~~k~~e~ 1149 (1184)
|.+|-..|..|+|+|.-.+.+
T Consensus 2 LeD~EsklN~AIERnalLE~E 22 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESE 22 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 677888888888888744333
No 351
>PF13514 AAA_27: AAA domain
Probab=41.94 E-value=6e+02 Score=35.07 Aligned_cols=57 Identities=19% Similarity=0.191 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 001026 1086 SYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEE 1142 (1184)
Q Consensus 1086 ~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee 1142 (1184)
.....++..++.........+..|+.-++.+......++.+..|...+...+...++
T Consensus 746 ~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~ 802 (1111)
T PF13514_consen 746 RELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEE 802 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666677777777788888888888766655556666666666655544433
No 352
>PRK14155 heat shock protein GrpE; Provisional
Probab=41.84 E-value=2.2e+02 Score=31.47 Aligned_cols=8 Identities=25% Similarity=0.410 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 001026 1049 EMQAISKG 1056 (1184)
Q Consensus 1049 El~~l~k~ 1056 (1184)
++.++...
T Consensus 28 e~~elkd~ 35 (208)
T PRK14155 28 EVAALKDQ 35 (208)
T ss_pred HHHHHHHH
Confidence 33333333
No 353
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=41.54 E-value=1.5e+02 Score=37.44 Aligned_cols=41 Identities=7% Similarity=0.102 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhCCCCCC
Q 001026 1079 KLLKEFLSYAEGEVRSLALLYSSVG----RNADALAQYFGEDPAR 1119 (1184)
Q Consensus 1079 ~~m~~Fl~~a~~~l~~L~~~~~~~~----~~~~~l~~yFGEd~~~ 1119 (1184)
+.++.|-++.+...+.+++++.+++ +.++.|...|+-+...
T Consensus 233 ~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~~~~~~ 277 (555)
T TIGR03545 233 QKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKYAIKSGD 277 (555)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHHHhCCCccc
Confidence 3445555555555566666666655 5788888888876543
No 354
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=41.51 E-value=54 Score=31.48 Aligned_cols=79 Identities=13% Similarity=0.077 Sum_probs=40.3
Q ss_pred ccHHHHHHHHhhhCCCCcEEEEEeccCCcCcccccccccCCceEEecCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcE
Q 001026 42 EYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNV 121 (1184)
Q Consensus 42 N~i~dV~~fL~~~H~~~~y~V~Nl~ee~~~~~~~~~~~~f~~~V~~~P~~~~~~p~p~L~~l~~~c~~i~~WL~~d~~NV 121 (1184)
-..+++.+.|+. +. ++.|..+++... |.. .+ ..|.-..++..|... ..||..+.+.-
T Consensus 12 i~~~~l~~~~~~--~~-~~~liDvR~~~e----------~~~--gh----Ipgainip~~~l~~~----~~~l~~~~~~~ 68 (109)
T cd01533 12 VSADELAALQAR--GA-PLVVLDGRRFDE----------YRK--MT----IPGSVSCPGAELVLR----VGELAPDPRTP 68 (109)
T ss_pred CCHHHHHHHHhc--CC-CcEEEeCCCHHH----------Hhc--Cc----CCCceeCCHHHHHHH----HHhcCCCCCCe
Confidence 345666666654 22 377888876432 211 11 123222345544332 23444455567
Q ss_pred EEEEecCCCCCchHHHHHHHHHHhh
Q 001026 122 LLMHCERGGWPVLAFMLAALLIYRK 146 (1184)
Q Consensus 122 vvvHCk~Gkgr~tg~mia~yLly~~ 146 (1184)
+||||..| .| +.+++.+|...|
T Consensus 69 ivv~C~~G-~r--s~~a~~~L~~~G 90 (109)
T cd01533 69 IVVNCAGR-TR--SIIGAQSLINAG 90 (109)
T ss_pred EEEECCCC-ch--HHHHHHHHHHCC
Confidence 99999754 35 444555555444
No 355
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=41.35 E-value=2.2e+02 Score=33.94 Aligned_cols=47 Identities=9% Similarity=0.041 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC--CCCCHHHHHHHHHHH
Q 001026 1086 SYAEGEVRSLALLYSSVGRNADALAQYFGEDP--ARCPFEQVVSTLLNF 1132 (1184)
Q Consensus 1086 ~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~--~~~~~e~ff~~l~~F 1132 (1184)
+.+.-++..|.-+..-+++.+..|..|=..+. .-++.++|+...-+-
T Consensus 29 D~~~LqLqNl~YE~~hL~kEI~~C~~F~s~~~~i~Lv~~eEF~~~ap~~ 77 (355)
T PF09766_consen 29 DALHLQLQNLLYEKSHLQKEIKKCLDFKSKYEDIELVPVEEFYAKAPEE 77 (355)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCCCcCccHHHHHHhChhh
Confidence 33444444444444445566666666655443 234667777644433
No 356
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=41.34 E-value=2.4e+02 Score=26.49 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 001026 1075 GNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGE 1115 (1184)
Q Consensus 1075 d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1115 (1184)
+.|...+..-++.++..+.+|...-..+....+++...|.+
T Consensus 6 ~Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~ 46 (92)
T PF14712_consen 6 EGLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKE 46 (92)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666667777777777777666666666666665544
No 357
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=41.10 E-value=86 Score=39.98 Aligned_cols=16 Identities=13% Similarity=0.335 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 001026 1047 AEEMQAISKGLEKVVQ 1062 (1184)
Q Consensus 1047 ~~El~~l~k~L~kv~~ 1062 (1184)
..++.+|...|.++..
T Consensus 479 ~rnvR~LegaL~rL~a 494 (617)
T PRK14086 479 SRNIRELEGALIRVTA 494 (617)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3345555555555543
No 358
>KOG3518 consensus Putative guanine nucleotide exchange factor [General function prediction only]
Probab=40.85 E-value=6.6e+02 Score=29.48 Aligned_cols=86 Identities=12% Similarity=0.100 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHH-HhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHH
Q 001026 1047 AEEMQAISKGLEKVVQE-LTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQV 1125 (1184)
Q Consensus 1047 ~~El~~l~k~L~kv~~e-l~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~f 1125 (1184)
.++|+++.++...+..| -++.. ..-.-...+-..++.....-.+|-++++.++...-++.+-|-|...+
T Consensus 137 vedl~aiie~yld~i~edqeklk----l~ldaisalfg~ie~ifafnkel~n~ldaadld~v~ia~cfve~s~e------ 206 (521)
T KOG3518|consen 137 VEDLKAIIEDYLDCIREDQEKLK----LGLDAISALFGCIEDIFAFNKELLNDLDAADLDCVAIAECFVEKSEE------ 206 (521)
T ss_pred HHHHHHHHHHHHHHHHhhHhhcc----CcHHHHHHHhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHhcchh------
Confidence 45666666665433322 22211 11111223333444444444555566666666667777777775322
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001026 1126 VSTLLNFVKMFVLAHEE 1142 (1184)
Q Consensus 1126 f~~l~~F~~~fk~a~ee 1142 (1184)
|.+..++++.|.+++.-
T Consensus 207 fe~yieyctny~rmmat 223 (521)
T KOG3518|consen 207 FEDYIEYCTNYHRMMAT 223 (521)
T ss_pred HHHHHHHHhhhHHHHHH
Confidence 55666777778777543
No 359
>PF12889 DUF3829: Protein of unknown function (DUF3829); InterPro: IPR024291 This is a small family of proteins from several bacterial species, whose function is not known. It may, however, be related to the GvpL_GvpF family of proteins (PF06386 from PFAM).; PDB: 3RH3_B 3IEE_A.
Probab=40.70 E-value=4.3e+02 Score=29.72 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHhhhhcCCC
Q 001026 986 IKLKRIMQTILSLGNALNHGT 1006 (1184)
Q Consensus 986 ~~L~~lL~~IL~iGN~LN~gt 1006 (1184)
..|..+..++-.+.+|.+...
T Consensus 83 ~~l~~l~~~~~e~~~Yy~~k~ 103 (276)
T PF12889_consen 83 PALKELYPLINELDSYYDSKD 103 (276)
T ss_dssp HHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHhhhhhh
Confidence 345556666666666666553
No 360
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=40.70 E-value=1.4e+02 Score=36.13 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=13.4
Q ss_pred hhhccCCCCCceeeeCcEEEe
Q 001026 6 KFFYRKPPDGLLEISERVFVF 26 (1184)
Q Consensus 6 r~~~~~~~lDLtyIT~RIiam 26 (1184)
.+..|..+.+.++|+++..-+
T Consensus 20 ~i~~r~~d~g~~~~s~~~~~~ 40 (493)
T KOG0804|consen 20 EISGRSEDSGFTSASERLPSQ 40 (493)
T ss_pred ccCCcccccccchhhhccCCc
Confidence 344466777788888874444
No 361
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=40.50 E-value=52 Score=44.71 Aligned_cols=65 Identities=18% Similarity=0.163 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001026 1046 LAEEMQAISKGLEKVVQELTASENDGEVSGNF-CKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQ 1111 (1184)
Q Consensus 1046 L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f-~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~ 1111 (1184)
+..|+..|.+.+.+++++++..+..... ..| ...=.+|++.+..+++.+++.+.++++....|..
T Consensus 840 ~~~e~~rLekel~kl~Kel~kl~~~L~n-~~f~~kap~~~veka~~kl~~~~~~l~~le~~l~~L~~ 905 (1052)
T PRK14900 840 LAAETARVDKEIGKVDQDLAVLERKLQN-PSFVQNAPPAVVEKDRARAEELREKRGKLEAHRAMLSG 905 (1052)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcC-chhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566666777777777776665543221 234 3444566777777777777777777666666554
No 362
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=40.45 E-value=2.6e+02 Score=27.02 Aligned_cols=77 Identities=13% Similarity=0.150 Sum_probs=48.7
Q ss_pred chHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1032 MTLMHYLCK--IQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADAL 1109 (1184)
Q Consensus 1032 ~TLLhflvk--i~L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l 1109 (1184)
...++-|++ -.+..+..+++++...-..+.+++......+.. .+.+..-......++..++..+.++++.+..+
T Consensus 25 ~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~----~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 25 EEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGED----AEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCC----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555 334556667777777666676666666554422 23444456667778888888888888877776
Q ss_pred Hhh
Q 001026 1110 AQY 1112 (1184)
Q Consensus 1110 ~~y 1112 (1184)
+..
T Consensus 101 l~~ 103 (108)
T PF02403_consen 101 LLS 103 (108)
T ss_dssp HCT
T ss_pred HHc
Confidence 654
No 363
>PF08359 TetR_C_4: YsiA-like protein, C-terminal region; InterPro: IPR013570 The members of this family are thought to be TetR-type (tetracycline resistance) transcriptional regulators that bear particular similarity to YsiA (P94548 from SWISSPROT). This entry represents the C-terminal domain.; PDB: 1VI0_B.
Probab=40.39 E-value=1.1e+02 Score=30.29 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1123 EQVVSTLLNFVKMFVLAHEENCR 1145 (1184)
Q Consensus 1123 e~ff~~l~~F~~~fk~a~ee~~k 1145 (1184)
.++...+.+....|.+.+++..+
T Consensus 56 ~~~~~~~~~~~~~~~~~i~~iI~ 78 (133)
T PF08359_consen 56 EELRKKINEIRREYLRIIEEIIE 78 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555556655555544
No 364
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=40.27 E-value=5.3e+02 Score=28.24 Aligned_cols=70 Identities=16% Similarity=0.139 Sum_probs=45.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1075 GNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCP--FEQVVSTLLNFVKMFVLAHEENC 1144 (1184)
Q Consensus 1075 d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~--~e~ff~~l~~F~~~fk~a~ee~~ 1144 (1184)
+...+.|..|+++=-..++++.+.|+++.+.|+..+.-+..-.++.. +++.-..|.+-.+.|..+.=+++
T Consensus 86 ~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k~~~~k~kk~~~l~Ea~~~L~~~Rk~f~~asLdyv 157 (200)
T cd07637 86 RSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIALVKNAQAPRHKPHEVEEATSTLTITRKCFRHLALDYV 157 (200)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567889999888888999999999999999877777664433322 23333344445555555544444
No 365
>PTZ00440 reticulocyte binding protein 2-like protein; Provisional
Probab=40.26 E-value=3.4e+02 Score=40.28 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1048 EEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALA 1110 (1184)
Q Consensus 1048 ~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~ 1110 (1184)
.+|.++...+..++.+|..+...- ...+.+.+.+-.+.-+..++...+++..+.+.|..+.
T Consensus 1612 ~~L~ei~s~I~nIE~~l~k~KKnY--EiGlleki~E~a~~~K~~iE~tke~Ins~i~~f~S~F 1672 (2722)
T PTZ00440 1612 KKLNEIYSDVDNIEKELKKHKKNY--EIGLLEKVIEINKNIKLYMDSTKESLNSLVNNFSSLF 1672 (2722)
T ss_pred hhhhhHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666777777776665432 1345666666666667777777777777666666653
No 366
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=40.20 E-value=3e+02 Score=31.22 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhhhcCCC-CCcceeeeeccchhchhcccc
Q 001026 988 LKRIMQTILSLGNALNHGT-ARGSAVGFRLDSLLKLTDTRA 1027 (1184)
Q Consensus 988 L~~lL~~IL~iGN~LN~gt-~rG~A~GFkL~SL~KL~dtKs 1027 (1184)
|..+.+.++.-.|.+|.=+ ....-.||.|+.|.-..++-+
T Consensus 169 Lesfa~~L~~KS~eI~tFttv~s~k~eF~L~ELESFKEinT 209 (353)
T PF01540_consen 169 LESFADLLNKKSREIDTFTTVQSTKEEFVLNELESFKEINT 209 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHH
Confidence 3334444444445444433 234457888887777776654
No 367
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=40.19 E-value=1.9e+02 Score=34.28 Aligned_cols=58 Identities=7% Similarity=0.020 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1091 EVRSLALLYSSVGRNADALAQYFGEDPA-RCPFEQVVSTLLNFVKMFVLAHEENCRQLE 1148 (1184)
Q Consensus 1091 ~l~~L~~~~~~~~~~~~~l~~yFGEd~~-~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e 1148 (1184)
.+..|.+.+.++++.+..+..-+..... ...-+.|...+..|+.......++..+..+
T Consensus 275 ~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~ 333 (370)
T PF02181_consen 275 SLDELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDELQELYE 333 (370)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444444333322111 122256677777777766666655544333
No 368
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=40.15 E-value=1.8e+02 Score=38.08 Aligned_cols=14 Identities=14% Similarity=0.406 Sum_probs=8.7
Q ss_pred HHHHHHHHhhcCcC
Q 001026 332 EAFAKVQEIFSNVD 345 (1184)
Q Consensus 332 e~f~~~~~~~~~~~ 345 (1184)
+-|.-+-|||+-.|
T Consensus 146 ~~feltvdmmd~~D 159 (980)
T KOG0980|consen 146 NGFELTVDMMDYMD 159 (980)
T ss_pred HHHHHHHHHHHHHH
Confidence 55667777775443
No 369
>cd08620 PI-PLCXDc_like_1 Catalytic domain of uncharacterized hypothetical proteins similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins. This subfamily corresponds to the catalytic domain present in a group of uncharacterized hypothetical proteins found in bacteria and fungi, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidyl
Probab=40.10 E-value=22 Score=40.79 Aligned_cols=28 Identities=14% Similarity=0.366 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEecC
Q 001026 101 ETVHHFLRSSESWLSLGHQNVLLMHCER 128 (1184)
Q Consensus 101 ~~l~~~c~~i~~WL~~d~~NVvvvHCk~ 128 (1184)
..+..++++|.+||.++++.||+|+++.
T Consensus 77 ~~l~~~L~~i~~FL~~~p~EvVil~~~~ 104 (281)
T cd08620 77 QGFDTFLQDVVTFLKANPTEIVVVHITW 104 (281)
T ss_pred CcHHHHHHHHHHHHHHCCCcEEEEEEEc
Confidence 4678999999999999999999999974
No 370
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=39.88 E-value=1.8e+02 Score=31.95 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 001026 1093 RSLALLYSSVGRNADALAQYFGEDPAR 1119 (1184)
Q Consensus 1093 ~~L~~~~~~~~~~~~~l~~yFGEd~~~ 1119 (1184)
..|...+..+.+.|..+...|++-+..
T Consensus 65 t~Ls~Al~~~g~~~e~Ig~l~~eQa~~ 91 (199)
T cd07626 65 VPLTQAIKHTGQAYEEIGELFAEQPKH 91 (199)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 356667777777788888888876554
No 371
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=39.65 E-value=3.2e+02 Score=25.45 Aligned_cols=32 Identities=6% Similarity=0.135 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1076 NFCKLLKEFLSYAEGEVRSLALLYSSVGRNAD 1107 (1184)
Q Consensus 1076 ~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~ 1107 (1184)
.....|.....+.......+...++.+++...
T Consensus 42 ~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~ 73 (103)
T PF00804_consen 42 ELKRELDELTDEIKQLFQKIKKRLKQLSKDNE 73 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555556666655555555555555433
No 372
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=39.59 E-value=5.3e+02 Score=29.61 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCC
Q 001026 1091 EVRSLALLYSSVGRNADALAQYFGE 1115 (1184)
Q Consensus 1091 ~l~~L~~~~~~~~~~~~~l~~yFGE 1115 (1184)
.++....+..++-+....|...+|.
T Consensus 118 dlk~~R~Laseit~~GA~LydlL~k 142 (267)
T PF10234_consen 118 DLKAARQLASEITQRGASLYDLLGK 142 (267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555666666666666665
No 373
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=39.48 E-value=1e+02 Score=32.15 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELTASENDGE-VSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNAD 1107 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~~s~~d~~-~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~ 1107 (1184)
+..+.++|+.|.+.++.+...++...++.. ..+.....+.--+++.+++|+.|+..++.+.+...
T Consensus 74 ~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~ 139 (157)
T COG3352 74 LQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLR 139 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 445667788888877777777766654421 11222222222344445555555555544444433
No 374
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=39.37 E-value=6.6e+02 Score=32.40 Aligned_cols=26 Identities=15% Similarity=0.232 Sum_probs=19.0
Q ss_pred CCcEEEEEecCCCCCchHHHHHHH-HHH
Q 001026 118 HQNVLLMHCERGGWPVLAFMLAAL-LIY 144 (1184)
Q Consensus 118 ~~NVvvvHCk~Gkgr~tg~mia~y-Lly 144 (1184)
..|+++||-..|.|- |.++-|.. ++|
T Consensus 27 ~~~~~~i~G~Ng~GK-ttll~ai~~~Ly 53 (650)
T TIGR03185 27 PKPIILIGGLNGAGK-TTLLDAIQLALY 53 (650)
T ss_pred CCeEEEEECCCCCCH-HHHHHHHHHHhc
Confidence 368999999999998 55655543 444
No 375
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=39.34 E-value=3.9e+02 Score=29.96 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 001026 1087 YAEGEVRSLALLYSSVGRNADALAQYFGE 1115 (1184)
Q Consensus 1087 ~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1115 (1184)
.++.+|+..+..|.+..+....+|.=+-+
T Consensus 167 ~~e~elr~Ae~kF~~~~E~a~~~M~~i~~ 195 (229)
T cd07594 167 QAEQDLRVAQSEFDRQAEITKLLLEGISS 195 (229)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666776666666655555544
No 376
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.33 E-value=2e+02 Score=35.64 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=10.4
Q ss_pred ccHHHHHHHHhhhCCC
Q 001026 42 EYLGGIVGQLREYFPE 57 (1184)
Q Consensus 42 N~i~dV~~fL~~~H~~ 57 (1184)
|+...|...|...|+-
T Consensus 19 ~~~~~lr~Vl~~~~pt 34 (741)
T KOG4460|consen 19 NHFLRLREVLKNQSPT 34 (741)
T ss_pred CccccHhHHhhhcCch
Confidence 6666666667766654
No 377
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=39.33 E-value=4.1e+02 Score=32.03 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1078 CKLLKEFLSYAEGEVRSLALLYSSVGRNA 1106 (1184)
Q Consensus 1078 ~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~ 1106 (1184)
...++..++..+.+|+.|...+..+++.|
T Consensus 248 a~~~~~hi~~l~~EveRlrt~l~~Aqk~~ 276 (552)
T KOG2129|consen 248 AAAEKLHIDKLQAEVERLRTYLSRAQKSY 276 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555544
No 378
>PF07431 DUF1512: Protein of unknown function (DUF1512); InterPro: IPR009995 This family consists of several archaeal proteins of around 370 residues in length. The function of this family is unknown.
Probab=39.33 E-value=1.2e+02 Score=35.87 Aligned_cols=70 Identities=16% Similarity=0.192 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1078 CKLLKEFLSYAEGEVRSLALLY--SSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQL 1147 (1184)
Q Consensus 1078 ~~~m~~Fl~~a~~~l~~L~~~~--~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~ 1147 (1184)
...|+.|+++++.++.++.+.. ++.+...+++++||--++...++..+...+...++.+....++..++.
T Consensus 35 l~~L~~~~~~a~~~~~~~l~~~~~~~~e~~i~r~~dffvI~Pv~ldP~gIv~k~~hll~t~e~~~~~~v~~~ 106 (355)
T PF07431_consen 35 LSELEQYRNEARKKVIEYLKKNGSEDPESLIDRLLDFFVIEPVDLDPTGIVRKLKHLLRTYEDRFEKEVKRL 106 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHhheecCcCCCCchhhHHHHHHHHHhhHHHHHHHHHHh
Confidence 3344444444444444333222 344667788888888888877777777777777777666665555443
No 379
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=39.30 E-value=4.3e+02 Score=27.68 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 001026 1086 SYAEGEVRSLALLYSSVG 1103 (1184)
Q Consensus 1086 ~~a~~~l~~L~~~~~~~~ 1103 (1184)
+.+..+|..|...+.+..
T Consensus 33 ~~~~~qL~~l~~y~~ey~ 50 (148)
T COG2882 33 ENAEEQLKMLSGYRNEYE 50 (148)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 380
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=39.22 E-value=4e+02 Score=31.36 Aligned_cols=67 Identities=19% Similarity=0.215 Sum_probs=33.5
Q ss_pred hhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 001026 1075 GNFCKLLKEFL---SYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHE 1141 (1184)
Q Consensus 1075 d~f~~~m~~Fl---~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~e 1141 (1184)
+-|.+.|+.|- ......+..=+.++.++.....++....+.+......+.++..|......|+....
T Consensus 243 ~lf~~eL~kf~~~~~~i~~~~~~Q~~ll~~i~~~~~~f~~~~~~~~~~~~r~~~l~~L~~ay~~y~el~~ 312 (342)
T cd08915 243 DLFEEHLKKFDKDLTYVEKTKKKQIELIKEIDAANQEFSQVKNSNDSLDPREEALQDLEASYKKYLELKE 312 (342)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555544432 22333333333444555555555555555444444456666666666666655543
No 381
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=39.02 E-value=1.6e+02 Score=33.51 Aligned_cols=27 Identities=19% Similarity=0.470 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcc
Q 001026 1047 AEEMQAISKGLEKVVQELTASENDGEV 1073 (1184)
Q Consensus 1047 ~~El~~l~k~L~kv~~el~~s~~d~~~ 1073 (1184)
.++|..|...|..+..+++.....|.+
T Consensus 122 ~~~i~~l~~~I~~ll~~aE~LGeeG~V 148 (254)
T PF03194_consen 122 AEKIDELDEKIGELLKEAEELGEEGDV 148 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 456677777777777777776665544
No 382
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=39.00 E-value=3.3e+02 Score=36.04 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1080 LLKEFLSYAEGEVRSLALLYSSVGRNADALA 1110 (1184)
Q Consensus 1080 ~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~ 1110 (1184)
.+....++++...+.|++.++++++..++++
T Consensus 533 ~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~ 563 (771)
T TIGR01069 533 HLEKLLKEQEKLKKELEQEMEELKERERNKK 563 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555554444443
No 383
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.90 E-value=5.3e+02 Score=30.06 Aligned_cols=17 Identities=24% Similarity=0.563 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001026 1048 EEMQAISKGLEKVVQEL 1064 (1184)
Q Consensus 1048 ~El~~l~k~L~kv~~el 1064 (1184)
++++.++..++++...+
T Consensus 40 ~~ve~Ir~~i~~l~~~~ 56 (297)
T KOG0810|consen 40 EDVEEIRDDIEKLDEDV 56 (297)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444433333
No 384
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.89 E-value=2.4e+02 Score=33.97 Aligned_cols=32 Identities=13% Similarity=0.009 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1122 FEQVVSTLLNFVKMFVLAHEENCRQLEFERKK 1153 (1184)
Q Consensus 1122 ~e~ff~~l~~F~~~fk~a~ee~~k~~e~ekkk 1153 (1184)
.++|.+..+++...+.+.+++..+++++++-+
T Consensus 376 ~e~~~K~th~~rqEaaQ~kk~Ek~Ka~kekl~ 407 (440)
T KOG2357|consen 376 EEEFLKLTHAARQEAAQEKKAEKKKAEKEKLK 407 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36677777777777777766666655554433
No 385
>smart00721 BAR BAR domain.
Probab=38.75 E-value=3.7e+02 Score=29.34 Aligned_cols=31 Identities=16% Similarity=0.068 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 001026 1085 LSYAEGEVRSLALLYSSVGRNADALAQYFGE 1115 (1184)
Q Consensus 1085 l~~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1115 (1184)
+..++++++..++.|+.+...+..-+..|-+
T Consensus 172 l~~~e~el~~ak~~fe~~~~~l~~~l~~l~~ 202 (239)
T smart00721 172 LAKAEEELRKAKQEFEESNAQLVEELPQLVA 202 (239)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557777777777777766655554444433
No 386
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=38.69 E-value=2.9e+02 Score=25.89 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELT 1065 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~ 1065 (1184)
+..+..-++++.+.++.++.++.
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~ 43 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVD 43 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Confidence 33444445555555555544443
No 387
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=38.65 E-value=1.1e+02 Score=28.78 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=17.1
Q ss_pred CCCcEEEEEecCCCCCchHHHHHHHHHHhh
Q 001026 117 GHQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1184)
Q Consensus 117 d~~NVvvvHCk~Gkgr~tg~mia~yLly~~ 146 (1184)
+.+..+||||..| +| +..+|.+|.-.|
T Consensus 59 ~~~~~ivv~C~~G-~r--s~~aa~~L~~~G 85 (100)
T cd01523 59 PDDQEVTVICAKE-GS--SQFVAELLAERG 85 (100)
T ss_pred CCCCeEEEEcCCC-Cc--HHHHHHHHHHcC
Confidence 4566899999865 45 455555555444
No 388
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=38.63 E-value=1.5e+02 Score=31.60 Aligned_cols=85 Identities=12% Similarity=0.148 Sum_probs=51.3
Q ss_pred hhHHhhccHHHHHHHHhhhCCCCcEEEEEeccCCcCcccccccccCCceEEecCCCCCCCCCCcHHHHHHHHHHHHHHHh
Q 001026 36 EEEEYKEYLGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLS 115 (1184)
Q Consensus 36 ~e~~YRN~i~dV~~fL~~~H~~~~y~V~Nl~ee~~~~~~~~~~~~f~~~V~~~P~~~~~~p~p~L~~l~~~c~~i~~WL~ 115 (1184)
.....+..|....+.|++..+. ....|-.=...+...+..++.+.+.+++.|=.+-.||..+.-+.+ ++.+.+.+.
T Consensus 75 ~~~~~~~ei~~~~~~l~~~~g~-~~~~fr~P~G~~~~~~~~~l~~~G~~~v~w~~~~~D~~~~~~~~i---~~~~~~~~~ 150 (191)
T TIGR02764 75 EDEKIKKDILRAQEIIEKLTGK-KPTLFRPPSGAFNKAVLKAAESLGYTVVHWSVDSRDWKNPGVESI---VDRVVKNTK 150 (191)
T ss_pred CHHHHHHHHHHHHHHHHHHhCC-CCCEEECCCcCCCHHHHHHHHHcCCeEEEecCCCCccCCCCHHHH---HHHHHhcCC
Confidence 3455677777778888777665 355555544444544445566777777776444445544444443 334444444
Q ss_pred cCCCcEEEEEe
Q 001026 116 LGHQNVLLMHC 126 (1184)
Q Consensus 116 ~d~~NVvvvHC 126 (1184)
+..||++||
T Consensus 151 --~g~Iil~Hd 159 (191)
T TIGR02764 151 --PGDIILLHA 159 (191)
T ss_pred --CCCEEEEeC
Confidence 457999999
No 389
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=38.56 E-value=6e+02 Score=35.21 Aligned_cols=239 Identities=15% Similarity=0.121 Sum_probs=0.0
Q ss_pred CCCcccccccccccccccccccceeeccccCCcchhH-------------------------------------------
Q 001026 918 GAPFSAKMRGLAHIELRRANNCEIMLTKVKIPLPDLM------------------------------------------- 954 (1184)
Q Consensus 918 ~~~~s~~~r~V~lLd~kRa~nl~I~L~klK~s~~ei~------------------------------------------- 954 (1184)
|-++....+|.-++|++-++... +++++++...+..
T Consensus 53 G~lPpnsk~~~FiHdpkIage~e-v~AqvkL~f~~~~G~~~~~~R~~qlt~k~~~~~~ktles~~~~~~~g~k~tlS~r~ 131 (1294)
T KOG0962|consen 53 GELPPNSKGGSFIHDPKVAGETE-VRAQVKLAFTDVNGETMICTRTIQLTQKRTKMEFKTLESVIWAINDGDRVTLSGRS 131 (1294)
T ss_pred CcCCCCCcCCCCCCCccccchhh-hhheeeeeeecCCCcEEEeehhhHHHHHHHHHHHHHHhhhheeeecCccccccchh
Q ss_pred -----HHHHhcCCCchhhhhhhhhhccchHHH--HHcchhHHHHHHHHHHHhhhhcCCCCCcceeeeeccchhc-----h
Q 001026 955 -----FFLELMKVPRVESKLRVFSFKIQFQTQ--VRNSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLK-----L 1022 (1184)
Q Consensus 955 -----Fll~L~~IPrl~~RL~~l~fk~~F~~~--L~~S~~L~~lL~~IL~iGN~LN~gt~rG~A~GFkL~SL~K-----L 1022 (1184)
-+...++|+.. -|+..+|..+=+.. |-+...|++.+-.|...--|.=+ |+.|.| .
T Consensus 132 ~d~d~~~~~~lGVskA--Il~~VIFcHQEdS~WPLsEp~~LKkkfD~IF~~tky~KA-----------ld~~kk~rkd~~ 198 (1294)
T KOG0962|consen 132 ADLDAEMPLHLGVSKA--ILENVIFCHQEDSTWPLSEPKNLKKKFDDIFSATKYTKA-----------LDSLKKLRKDQS 198 (1294)
T ss_pred hhhhHHHHHhcCCcHH--HHhhhheecccCCCCCCCChHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Q ss_pred hcccccCCcchHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHH
Q 001026 1023 TDTRARNNKMTLMHYLCK------IQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLA 1096 (1184)
Q Consensus 1023 ~dtKs~d~k~TLLhflvk------i~L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~ 1096 (1184)
.++|........|.++.+ ..++.....+...+..+..++.++....... +.....+.++ ++...++..|+
T Consensus 199 ~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i---~ei~~~~~el-~k~~~~~~~l~ 274 (1294)
T KOG0962|consen 199 QEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKI---EEIEKSLKEL-EKLLKQVKLLD 274 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHH-HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH--hhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhccchhh
Q 001026 1097 LLYSSVGRNADALA--QYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENC-RQLEFERKKAEKAVENEKLKTQKGQSEHL 1173 (1184)
Q Consensus 1097 ~~~~~~~~~~~~l~--~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~~-k~~e~ekkk~ekeaekek~k~~~~e~~~~ 1173 (1184)
....++.+.+..+. .+++++.......+.+..|.+-+..+..-.++.. +....+..+..+-.++.+.....++-+.+
T Consensus 275 ~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~~~~~~lq~e 354 (1294)
T KOG0962|consen 275 SEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEERSSLIQLKTELDLEQSELQAE 354 (1294)
T ss_pred HHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h
Q 001026 1174 V 1174 (1184)
Q Consensus 1174 ~ 1174 (1184)
.
T Consensus 355 ~ 355 (1294)
T KOG0962|consen 355 A 355 (1294)
T ss_pred H
No 390
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=38.48 E-value=3.6e+02 Score=35.06 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELTASEN 1069 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~~s~~ 1069 (1184)
+.-|..|-..|++.|+-+.+.|...+.
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~ 415 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEK 415 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 455667777777777777777665543
No 391
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=38.47 E-value=3.1e+02 Score=37.94 Aligned_cols=29 Identities=24% Similarity=0.218 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1080 LLKEFLSYAEGEVRSLALLYSSVGRNADA 1108 (1184)
Q Consensus 1080 ~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~ 1108 (1184)
.+...++.+..++..++..+.++...+..
T Consensus 257 ~~~~~~~~~~~~i~~~~~~~~e~~~~~~~ 285 (1163)
T COG1196 257 ELQEELEEAEKEIEELKSELEELREELEE 285 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544444433
No 392
>TIGR01612 235kDa-fam reticulocyte binding/rhoptry protein. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Probab=38.45 E-value=6.3e+02 Score=37.29 Aligned_cols=75 Identities=15% Similarity=0.197 Sum_probs=45.5
Q ss_pred hHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1033 TLMHYLCKIQ-----LKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNAD 1107 (1184)
Q Consensus 1033 TLLhflvki~-----L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~ 1107 (1184)
+++.||..+. +.+=..+|.++...+..++.+|..+...- ...+.+.+.+-.+.-+..++...+++.-+...+.
T Consensus 1654 ~y~k~Lesik~eKk~I~~ek~~L~ei~s~I~nIE~dL~k~KKnY--EiGllekI~EiA~~~K~~iEstKesInsti~n~~ 1731 (2757)
T TIGR01612 1654 SLQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNY--EIGIIEKIKEIAIANKEEIESIKELIEPTIENLI 1731 (2757)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777721 11222456666777777777777766432 2345667777666667777777766665555554
Q ss_pred HH
Q 001026 1108 AL 1109 (1184)
Q Consensus 1108 ~l 1109 (1184)
.+
T Consensus 1732 S~ 1733 (2757)
T TIGR01612 1732 SS 1733 (2757)
T ss_pred HH
Confidence 43
No 393
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=38.43 E-value=3.3e+02 Score=27.57 Aligned_cols=65 Identities=8% Similarity=0.107 Sum_probs=45.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1075 GNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQ----YFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCR 1145 (1184)
Q Consensus 1075 d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~----yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~~k 1145 (1184)
+.+...|..|++..+.+++.|+..+..+++...+... |++ .+=.-|..+..|..+|.+..+-..+
T Consensus 14 ~~l~~~L~~Yi~~~~~kl~~l~~~~~~~~~~~~~~~~d~e~yl~------nPlnaF~LIrRl~~dW~~~~~~~~~ 82 (134)
T PF08336_consen 14 EELISNLRNYIEELQEKLDTLKRFLDEMKREHEKAKSDPEEYLS------NPLNAFSLIRRLHQDWPKWEKLMEQ 82 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhh------cHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4567788899999999999999888888877665443 222 2234477888888888777544443
No 394
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=38.21 E-value=5.2e+02 Score=27.46 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHHHh
Q 001026 986 IKLKRIMQTILSLG 999 (1184)
Q Consensus 986 ~~L~~lL~~IL~iG 999 (1184)
..+..++..|-.|.
T Consensus 40 ~~i~~~~~~i~~ia 53 (213)
T PF00015_consen 40 EDISEILSLINEIA 53 (213)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 395
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=38.18 E-value=7.6e+02 Score=30.12 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=16.5
Q ss_pred HHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 001026 1104 RNADALAQYFGEDPARCPFEQVVSTLLNF 1132 (1184)
Q Consensus 1104 ~~~~~l~~yFGEd~~~~~~e~ff~~l~~F 1132 (1184)
+.|++++.++-+..+..+.+++...+.+.
T Consensus 160 ~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l 188 (447)
T KOG2751|consen 160 DTYKACLQRLEQQNQDVSEEDLLKELKNL 188 (447)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 45666666776655554555555554443
No 396
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=38.08 E-value=4.4e+02 Score=27.45 Aligned_cols=26 Identities=8% Similarity=0.285 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELTASE 1068 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~~s~ 1068 (1184)
++.+.+.+.+..+.|.-+.++++...
T Consensus 32 fk~~l~~L~sTl~~i~P~i~eI~~~~ 57 (147)
T PF05659_consen 32 FKSILKRLESTLESIIPIIKEIDKLN 57 (147)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHh
Confidence 33344444444444444444544443
No 397
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=37.98 E-value=1.1e+02 Score=32.05 Aligned_cols=32 Identities=9% Similarity=0.165 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1076 NFCKLLKEFLSYAEGEVRSLALLYSSVGRNAD 1107 (1184)
Q Consensus 1076 ~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~ 1107 (1184)
++++.|.+..++.+++++++.+.-.-|.+.|+
T Consensus 51 eLkNeLREVREELkEKmeEIKQIKdiMDKDFD 82 (205)
T PF15079_consen 51 ELKNELREVREELKEKMEEIKQIKDIMDKDFD 82 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34445555555555555555544444444444
No 398
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=37.91 E-value=74 Score=30.04 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=18.5
Q ss_pred HHHhcCCCcEEEEEecCCCCCchHHHHHHHHHHhh
Q 001026 112 SWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1184)
Q Consensus 112 ~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~ 146 (1184)
.||..+.+..+||+|..|. | +..+|..|...|
T Consensus 58 ~~~~~~~~~~vv~~c~~g~-~--s~~~a~~L~~~G 89 (105)
T cd01525 58 PRLENYKGKIIVIVSHSHK-H--AALFAAFLVKCG 89 (105)
T ss_pred HHHHhhcCCeEEEEeCCCc-c--HHHHHHHHHHcC
Confidence 3555554668999997554 4 334444555444
No 399
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=37.83 E-value=6.6e+02 Score=30.69 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=12.3
Q ss_pred CCCcceeeeeccchhc
Q 001026 1006 TARGSAVGFRLDSLLK 1021 (1184)
Q Consensus 1006 t~rG~A~GFkL~SL~K 1021 (1184)
..++...||.-+.|.+
T Consensus 65 ~Pk~~~~gFDpeaLER 80 (630)
T KOG0742|consen 65 APKDSWSGFDPEALER 80 (630)
T ss_pred CccccccCCChHHHHH
Confidence 3577788998888876
No 400
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.82 E-value=5e+02 Score=28.53 Aligned_cols=40 Identities=20% Similarity=0.178 Sum_probs=29.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001026 1073 VSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQY 1112 (1184)
Q Consensus 1073 ~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~y 1112 (1184)
..+.-.+.+.+|.-.+..++..-++.|.++.+..+.++.-
T Consensus 30 ~~dr~v~~l~ksf~~~~~E~~kee~~y~ea~ri~Ka~L~~ 69 (222)
T KOG3215|consen 30 GGDRLVEHLEKSFVLAKAEIEKEEKEYSEAKRIRKALLAS 69 (222)
T ss_pred CCcHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHH
Confidence 3467778888888888888888887788877776664433
No 401
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=37.73 E-value=4.2e+02 Score=35.02 Aligned_cols=20 Identities=15% Similarity=0.019 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001026 1081 LKEFLSYAEGEVRSLALLYS 1100 (1184)
Q Consensus 1081 m~~Fl~~a~~~l~~L~~~~~ 1100 (1184)
++...++.+.+.+.|++..+
T Consensus 541 ~~~~~~~l~~~~~~l~~~~~ 560 (771)
T TIGR01069 541 QEKLKKELEQEMEELKERER 560 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444443333
No 402
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=37.64 E-value=4.4e+02 Score=34.45 Aligned_cols=17 Identities=6% Similarity=-0.191 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001026 1128 TLLNFVKMFVLAHEENC 1144 (1184)
Q Consensus 1128 ~l~~F~~~fk~a~ee~~ 1144 (1184)
...++-.++++.+.|..
T Consensus 546 r~~~lE~E~~~lr~elk 562 (697)
T PF09726_consen 546 RRRQLESELKKLRRELK 562 (697)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555554443
No 403
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=37.63 E-value=1.2e+02 Score=38.46 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHhhhhcCC
Q 001026 987 KLKRIMQTILSLGNALNHG 1005 (1184)
Q Consensus 987 ~L~~lL~~IL~iGN~LN~g 1005 (1184)
-||+||+-.+.+|..|+..
T Consensus 300 vlRriiRRa~r~~~~lg~~ 318 (552)
T PF01411_consen 300 VLRRIIRRAVRFGRKLGIE 318 (552)
T ss_dssp HHHHHHHHHHHHHHHTT-S
T ss_pred hHHHHHHHHHHHHHHhCCC
Confidence 4777777777777666543
No 404
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=37.52 E-value=4.7e+02 Score=26.79 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 001026 1076 NFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLA 1139 (1184)
Q Consensus 1076 ~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a 1139 (1184)
.++..+..|..+...-+..|+. .+..+|+++... -.+.+.+......++.+
T Consensus 30 ~lk~~f~~~~~~~~~~~~eL~~-----------~v~~lGg~p~~~--gs~~g~lhr~w~~lks~ 80 (139)
T TIGR02284 30 ELATLFRRIAGEKSAIVSELQQ-----------VVASLGGKPEDH--GSMVGSLHQFWGKIRAT 80 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHhCCCCCCC--CcHHHHHHHHHHHHHHH
Confidence 4556666665555555555544 344555544432 23344444444444443
No 405
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=37.48 E-value=1.1e+02 Score=36.83 Aligned_cols=8 Identities=13% Similarity=0.135 Sum_probs=3.6
Q ss_pred HHHHhcCC
Q 001026 955 FFLELMKV 962 (1184)
Q Consensus 955 Fll~L~~I 962 (1184)
+|..|-.|
T Consensus 239 iLRgLGAI 246 (641)
T KOG3915|consen 239 ILRGLGAI 246 (641)
T ss_pred HHhccccc
Confidence 44444443
No 406
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=37.46 E-value=6.5e+02 Score=28.42 Aligned_cols=96 Identities=9% Similarity=0.121 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCC--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 001026 1042 QLKFLAEEMQAISKGLEKVVQELTASENDG--EVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPAR 1119 (1184)
Q Consensus 1042 ~L~~L~~El~~l~k~L~kv~~el~~s~~d~--~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~ 1119 (1184)
.|+++..+.++|+.-|..++..++...... ...|.-+...-...++...+++.+...+.++-+....+-. -..+.
T Consensus 135 ~L~~I~sqQ~ELE~~L~~lE~k~~~~~g~~~~~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~---~~d~t 211 (254)
T KOG2196|consen 135 ELEFILSQQQELEDLLDPLETKLELQSGHTYLSRADVEREQTYKMAENIDSQLKRLSEDLKQIIKSLNTMSK---TVDKT 211 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccC---ccccC
Confidence 455666677777777777777766543211 0112223333333344444555555555544444433222 22223
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 001026 1120 CPFEQVVSTLLNFVKMFVLAH 1140 (1184)
Q Consensus 1120 ~~~e~ff~~l~~F~~~fk~a~ 1140 (1184)
...-++.+++...+..+....
T Consensus 212 ~~~~qi~Kilnah~~sLqwl~ 232 (254)
T KOG2196|consen 212 DPIIQIEKILNAHMDSLQWLD 232 (254)
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 344566677666555554443
No 407
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M32 (carboxypeptidase Taq family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Carboxypeptidase Taq is a zinc-containing thermostable metallopeptidase. It was originally discovered and purified from Thermus aquaticus; optimal enzymatic activity occurs at 80 celcius. Although very little is known about this enzyme, it is thought either to be associated with a membrane or to be particle bound.; GO: 0004181 metallocarboxypeptidase activity, 0006508 proteolysis; PDB: 1K9X_A 1KA4_A 1KA2_A 3DWC_A 1WGZ_A 3HQ2_A 3HOA_B.
Probab=37.42 E-value=34 Score=42.37 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=24.5
Q ss_pred HHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 001026 1104 RNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHE 1141 (1184)
Q Consensus 1104 ~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~e 1141 (1184)
+-|+.|+.-|-..-....++.+|..|..++..+.+.+.
T Consensus 152 ~~YDaLLd~yEpg~t~~~ld~~F~~lk~~l~~l~~~i~ 189 (494)
T PF02074_consen 152 SPYDALLDDYEPGMTTEKLDEIFAELKAFLVPLLQKIL 189 (494)
T ss_dssp SHHHHHHHHHSTT--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777776655555677888888777776655543
No 408
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.39 E-value=2.8e+02 Score=38.88 Aligned_cols=27 Identities=7% Similarity=0.129 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1122 FEQVVSTLLNFVKMFVLAHEENCRQLE 1148 (1184)
Q Consensus 1122 ~e~ff~~l~~F~~~fk~a~ee~~k~~e 1148 (1184)
+..|+..+...+...++..++.....+
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~e~~ 418 (1311)
T TIGR00606 392 IKNFHTLVIERQEDEAKTAAQLCADLQ 418 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777766666666655544333
No 409
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=37.35 E-value=3.1e+02 Score=29.94 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1079 KLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKK 1153 (1184)
Q Consensus 1079 ~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~ekkk 1153 (1184)
..+...+..++.....+...+..+++....++.-+.++..+ -.++...=-+|+..+.+-++...++.+.|+..
T Consensus 84 ~~Le~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrk--h~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~ 156 (192)
T PF09727_consen 84 AELEKLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRK--HAEDMAQGDDFTNLLEKERERLKQQLEQEKAQ 156 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666777777777777776666553221 13344444456666666666666665655544
No 410
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=37.26 E-value=1.1e+03 Score=30.98 Aligned_cols=16 Identities=13% Similarity=0.295 Sum_probs=9.4
Q ss_pred HHhhccHHHHHHHHhh
Q 001026 38 EEYKEYLGGIVGQLRE 53 (1184)
Q Consensus 38 ~~YRN~i~dV~~fL~~ 53 (1184)
+.|+.-+.-|.+|.++
T Consensus 38 k~ykhVVqsVeKfi~k 53 (894)
T KOG0132|consen 38 KLYKHVVQSVEKFIKK 53 (894)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4566666666666654
No 411
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=37.13 E-value=5.3e+02 Score=32.51 Aligned_cols=40 Identities=8% Similarity=0.019 Sum_probs=18.6
Q ss_pred HHHHHHHhhhCCCCCCCCHHHHHHH----HHHHHHHHHHHHHHH
Q 001026 1104 RNADALAQYFGEDPARCPFEQVVST----LLNFVKMFVLAHEEN 1143 (1184)
Q Consensus 1104 ~~~~~l~~yFGEd~~~~~~e~ff~~----l~~F~~~fk~a~ee~ 1143 (1184)
....++..|+--|.....-+.|-.. |.++..+|......+
T Consensus 222 ~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~n 265 (546)
T KOG0977|consen 222 QEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQN 265 (546)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666533233333333 334444444443333
No 412
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=37.09 E-value=5.2e+02 Score=27.17 Aligned_cols=56 Identities=11% Similarity=0.007 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 001026 1078 CKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAH 1140 (1184)
Q Consensus 1078 ~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ 1140 (1184)
...|..-+.+.+.++..|+..+..+......|.. ..+.+++-..+.++........
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~-------~~t~~el~~~i~~l~~e~~~l~ 129 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSS-------EPTNEELREEIEELEEEIEELE 129 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666665543 2333555555555554444433
No 413
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=37.05 E-value=7.1e+02 Score=28.74 Aligned_cols=17 Identities=24% Similarity=0.390 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhhhcCCC
Q 001026 990 RIMQTILSLGNALNHGT 1006 (1184)
Q Consensus 990 ~lL~~IL~iGN~LN~gt 1006 (1184)
.|..++-.+-+.+|.|.
T Consensus 9 ~L~~L~~~Yv~aIn~G~ 25 (297)
T PF02841_consen 9 MLAELVKSYVDAINSGS 25 (297)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 45566777788888874
No 414
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=36.73 E-value=2e+02 Score=28.38 Aligned_cols=80 Identities=11% Similarity=0.026 Sum_probs=45.2
Q ss_pred cccCCcCCCCCceeEEEEEecCCCcccCCCCcEEEeCccCccce-eeecccCccEEEEeccc-----cccCCeEEEEEec
Q 001026 181 RVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLV-RHYKQADCELVKIDIHC-----HIQGDVVLECISL 254 (1184)
Q Consensus 181 r~VP~f~~~~gcrP~l~Iy~~~~~~~~~~~~~~lfss~~~~~~~-~~~~~~d~~~i~i~~~~-----~v~GDV~i~~~h~ 254 (1184)
+.++..+..+.|.||++|+-.. ..+.|....+.. -.|.+ .+.|.+.. .-...+.|.||+.
T Consensus 9 ~~L~~~d~~g~~dpYv~v~l~~----------~~~kT~v~~~t~nP~Wne----~f~F~v~~~~~~~~~~~~l~~~v~d~ 74 (126)
T cd08682 9 RGLLCKGKSGTNDAYVIIQLGK----------EKYSTSVKEKTTSPVWKE----ECSFELPGLLSGNGNRATLQLTVMHR 74 (126)
T ss_pred cCCcCCCCCcCCCceEEEEECC----------eeeeeeeecCCCCCEeCc----eEEEEecCcccCCCcCCEEEEEEEEc
Confidence 3444455557799999998542 123333211111 23422 35666643 2344677889988
Q ss_pred CCcCccceeEEEEEeeccccc
Q 001026 255 DSDQEREEMMFRVMFNTAFIR 275 (1184)
Q Consensus 255 ~~~~~~~~~~Fr~~FnT~FI~ 275 (1184)
+.. .+...|.++.|...=+.
T Consensus 75 ~~~-~~d~~iG~~~i~l~~l~ 94 (126)
T cd08682 75 NLL-GLDKFLGQVSIPLNDLD 94 (126)
T ss_pred ccc-CCCceeEEEEEEHHHhh
Confidence 632 34568888888776543
No 415
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=36.71 E-value=1.2e+02 Score=37.37 Aligned_cols=38 Identities=18% Similarity=0.113 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 001026 1078 CKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGE 1115 (1184)
Q Consensus 1078 ~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGE 1115 (1184)
++.|...+..+.+.-+.++..+++++++|.+++..|.|
T Consensus 256 keel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~E 293 (596)
T KOG4360|consen 256 KEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHE 293 (596)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888999999999999999999977
No 416
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=36.49 E-value=5.2e+02 Score=31.07 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 001026 1088 AEGEVRSLALLYSSVGR 1104 (1184)
Q Consensus 1088 a~~~l~~L~~~~~~~~~ 1104 (1184)
.-.+|+.|+.++.++.+
T Consensus 317 lv~RL~tL~~lH~~a~~ 333 (388)
T PF04912_consen 317 LVERLKTLKSLHEEAAE 333 (388)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555554443
No 417
>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].
Probab=36.41 E-value=2.8e+02 Score=32.17 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 001026 1042 QLKFLAEEMQAISKGLEKVVQELTASEND 1070 (1184)
Q Consensus 1042 ~L~~L~~El~~l~k~L~kv~~el~~s~~d 1070 (1184)
+..+|..++.++.+.|..+.+.+.....+
T Consensus 169 D~seLe~~~s~~sk~Lq~lqq~v~~Lask 197 (325)
T PF06694_consen 169 DVSELEKKASELSKQLQSLQQQVAELASK 197 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677777778888887777766655443
No 418
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=36.39 E-value=3.1e+02 Score=26.27 Aligned_cols=81 Identities=16% Similarity=0.138 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHH
Q 001026 1045 FLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQ 1124 (1184)
Q Consensus 1045 ~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ 1124 (1184)
.+.++|..+...+..+...|.......... ...+.+.++|..+++.-..+..|..+... ++
T Consensus 8 k~~~~l~~v~~~~~lL~emL~~~~~~~~~~---------------~~~el~~eL~~~ck~~r~~i~~li~~~~d----ee 68 (100)
T PF03127_consen 8 KRRSELEKVKNNAKLLNEMLDNYDPGEESS---------------SDNELIQELYESCKSMRPRIQRLIEEVED----EE 68 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTTSTH---------------HHHHHHHHHHHHHHHHHHHHHHHHHTSTT----CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCc---------------cchHHHHHHHHHHHHHHHHHHHHHhhcCc----HH
Confidence 356777777777776666666554332111 11123334455555555555555555332 34
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 001026 1125 VVSTLLNFVKMFVLAHEENC 1144 (1184)
Q Consensus 1125 ff~~l~~F~~~fk~a~ee~~ 1144 (1184)
+++.+...-..+.++...+.
T Consensus 69 ~l~~lL~~ND~L~~~l~~Y~ 88 (100)
T PF03127_consen 69 LLGELLQANDELNQALERYD 88 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777766666666666554
No 419
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=36.38 E-value=81 Score=36.23 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=7.3
Q ss_pred eeccccCCcchhH
Q 001026 942 MLTKVKIPLPDLM 954 (1184)
Q Consensus 942 ~L~klK~s~~ei~ 954 (1184)
+|.++|-++.|+.
T Consensus 79 vWd~VkA~nPe~k 91 (410)
T KOG4715|consen 79 VWDQVKASNPELK 91 (410)
T ss_pred hhhhhhccCcchH
Confidence 4555665555554
No 420
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=36.34 E-value=1.9e+02 Score=28.35 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001026 1041 IQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQ 1111 (1184)
Q Consensus 1041 i~L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~ 1111 (1184)
-++..+.+.+......|..++.+++..-+. +. ...|+.-+.+.+.+++.+...++.+....+-|++
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~----~d-v~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTR----DD-VHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCH----HH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777777888888888776543 22 3456666677777777777777766665554443
No 421
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=36.34 E-value=5e+02 Score=26.74 Aligned_cols=29 Identities=24% Similarity=0.138 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1079 KLLKEFLSYAEGEVRSLALLYSSVGRNAD 1107 (1184)
Q Consensus 1079 ~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~ 1107 (1184)
+.+++-++.++.++..++.....+...+.
T Consensus 76 ~rL~~~~~~~ere~~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 76 ERLKEQLEELERELASAEEKERQLQKQLK 104 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555444
No 422
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=36.33 E-value=1.8e+02 Score=38.72 Aligned_cols=70 Identities=13% Similarity=0.032 Sum_probs=47.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-CCCCCC--CHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1075 GNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFG-EDPARC--PFEQVVSTLLNFVKMFVLAHEENC 1144 (1184)
Q Consensus 1075 d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFG-Ed~~~~--~~e~ff~~l~~F~~~fk~a~ee~~ 1144 (1184)
..|...+....+.|+-.++.+.+.+.++.+.+..+..+|+ ...... ..+.|...+..|+......+++..
T Consensus 666 ~~~~~~l~~v~~aa~i~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~f~~~~~~fl~~ae~ev~~l~ 738 (833)
T KOG1922|consen 666 LKFLSDLSNVESAAKIDLEVLAEECSDLKKGLEKVKRELPTASKNESLPPGDPFSKVKKEFLSSAEKEVKLLI 738 (833)
T ss_pred hcccchhcccchhhccCHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCccchhhhhhhhhhhhHHHHHHHHH
Confidence 5566777777778888888888888888888888888886 222221 335677777777766665554443
No 423
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=36.31 E-value=6.2e+02 Score=28.04 Aligned_cols=60 Identities=17% Similarity=0.066 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1078 CKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEF 1149 (1184)
Q Consensus 1078 ~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~ 1149 (1184)
...|..++..++.++..+++..+++....+..- .++...|..+-..|+..+..|..-+.+
T Consensus 138 n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q------------~~~~~~L~~Le~~W~~~v~kn~eie~a 197 (221)
T PF05700_consen 138 NEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQ------------EEAGEELRYLEQRWKELVSKNLEIEVA 197 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777766555322 234556666667777766666644443
No 424
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=36.22 E-value=1.8e+02 Score=32.06 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHH
Q 001026 1094 SLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLL 1130 (1184)
Q Consensus 1094 ~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~ 1130 (1184)
.|.+.+..+.+.|..+..+|+|-++. +++-+...|.
T Consensus 74 ~L~~Ai~~tg~~y~~IG~~faeQpk~-Dl~pl~d~L~ 109 (210)
T cd07668 74 DLNDAITEAGKTYEEIASLVAEQPKK-DLHFLMETNH 109 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchh-hhHHHHHHHH
Confidence 57888888999999999999998765 3333333333
No 425
>KOG0155 consensus Transcription factor CA150 [Transcription]
Probab=36.21 E-value=2.1e+02 Score=35.38 Aligned_cols=9 Identities=11% Similarity=0.180 Sum_probs=3.6
Q ss_pred chHHHHHHH
Q 001026 1032 MTLMHYLCK 1040 (1184)
Q Consensus 1032 ~TLLhflvk 1040 (1184)
++.-.|-.+
T Consensus 327 s~y~~F~~K 335 (617)
T KOG0155|consen 327 SSYSSFKSK 335 (617)
T ss_pred cchHHHHHH
Confidence 334444433
No 426
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=36.18 E-value=1.4e+02 Score=32.48 Aligned_cols=42 Identities=19% Similarity=0.319 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEecCCCCCch--HHHHHHHHHHhh
Q 001026 104 HHFLRSSESWLSLGHQNVLLMHCERGGWPVL--AFMLAALLIYRK 146 (1184)
Q Consensus 104 ~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~t--g~mia~yLly~~ 146 (1184)
.+.++.+.+++....++- ++=|..||-|.+ |+++||+|+-.+
T Consensus 72 ~~~~~~v~~~i~~~~~~~-v~vnlsgG~R~l~~~~~~a~~~~~~~ 115 (203)
T TIGR01884 72 PSILRQMSDIIKEEREPR-VIINLSGGMRILILILLLLAILVKTR 115 (203)
T ss_pred HHHHHHHHHHHHhcccCc-EEEEcCCCchHHHHHHHHHHHhcccc
Confidence 466777777887765543 555667777733 346666666443
No 427
>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe (Fission yeast) mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version [].
Probab=36.06 E-value=2.2e+02 Score=28.47 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001026 1075 GNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYF 1113 (1184)
Q Consensus 1075 d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yF 1113 (1184)
..|++.+.+|+...-..+. -.-+|++ ..++.++.|.
T Consensus 16 k~Fr~~~~~F~~~lv~~~~-~~~Lyd~--~l~~~l~~wl 51 (118)
T PF08514_consen 16 KKFRKNFCEFFDQLVEQCH-SSILYDD--YLMDNLISWL 51 (118)
T ss_pred HHHHHHHHHHHHHHHHHhc-ccccccH--HHHHHHHHHH
Confidence 5677777777777666555 3444444 2333444443
No 428
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=35.91 E-value=8.9e+02 Score=29.54 Aligned_cols=30 Identities=7% Similarity=-0.078 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1079 KLLKEFLSYAEGEVRSLALLYSSVGRNADA 1108 (1184)
Q Consensus 1079 ~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~ 1108 (1184)
.++.+-++.+..++...++++..+......
T Consensus 335 qr~sd~LE~lrlql~~eq~l~~rm~d~Lrr 364 (502)
T KOG0982|consen 335 QRSSDLLEALRLQLICEQKLRVRMNDILRR 364 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666766666666666666554443
No 429
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.83 E-value=2.8e+02 Score=31.32 Aligned_cols=147 Identities=17% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhcC-----CCCCcceeeeeccchhchhcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 989 KRIMQTILSLGNALNH-----GTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCKIQLKFLAEEMQAISKGLEKVVQE 1063 (1184)
Q Consensus 989 ~~lL~~IL~iGN~LN~-----gt~rG~A~GFkL~SL~KL~dtKs~d~k~TLLhflvki~L~~L~~El~~l~k~L~kv~~e 1063 (1184)
..|=++.+.-|..|.. ++..|.|-+===+...||.+.|..-...---.|+.. |..-++.-.+.+.+.++.
T Consensus 81 ~aLs~~m~~~~~~l~~~~~~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~p-----L~~~L~~d~k~i~k~RKk 155 (242)
T cd07600 81 HALSRAALASSLELKSLEPEDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAK-----LRETLNTSFQKAHKARKK 155 (242)
T ss_pred HHHHHHHHHHHHHhCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q ss_pred HhhhccCCccchhhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHH
Q 001026 1064 LTASENDGEVSGNFCKLLKEF-----LSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVL 1138 (1184)
Q Consensus 1064 l~~s~~d~~~~d~f~~~m~~F-----l~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~ 1138 (1184)
|+...-+. |..+.+++.- .+..+.+++..+..|....+....+|..+-+. .++...|..|+..-..
T Consensus 156 le~~RLd~---D~~K~~~~ka~~~~k~~~~~~e~E~aEdef~~a~E~a~~~M~~il~~------~e~i~~L~~fv~AQl~ 226 (242)
T cd07600 156 VEDKRLQL---DTARAELKSAEPAEKQEAARVEVETAEDEFVSATEEAVELMKEVLDN------PEPLQLLKELVKAQLA 226 (242)
T ss_pred HHHHHHHH---HHHHHHHHhccccccccchHHHHHHHHHHHHHhHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 001026 1139 AHEENCRQLEF 1149 (1184)
Q Consensus 1139 a~ee~~k~~e~ 1149 (1184)
-++...+..+.
T Consensus 227 Yh~~~~e~L~~ 237 (242)
T cd07600 227 YHKTAAELLEE 237 (242)
T ss_pred HHHHHHHHHHH
No 430
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=35.75 E-value=3.3e+02 Score=27.48 Aligned_cols=31 Identities=13% Similarity=0.068 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1078 CKLLKEFLSYAEGEVRSLALLYSSVGRNADA 1108 (1184)
Q Consensus 1078 ~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~ 1108 (1184)
.+.+.+-++..+.+|+.|++..+.+++.|++
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~e 102 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEE 102 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444454444444444443
No 431
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=35.70 E-value=51 Score=39.59 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=37.1
Q ss_pred EEEeccCCcCcccccccccCCceEEecCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecC
Q 001026 62 VFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCER 128 (1184)
Q Consensus 62 V~Nl~ee~~~~~~~~~~~~f~~~V~~~P~~~~~~p~p~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~ 128 (1184)
|.++..+.+-.++.++...|...|..+-..| |. ...++.|-+.|+ -..+-+.|+++||+.
T Consensus 83 VLv~~nG~FG~R~~~ia~~~g~~v~~~~~~w-g~-~v~p~~v~~~L~-----~~~~~~~V~~vH~ET 142 (383)
T COG0075 83 VLVVVNGKFGERFAEIAERYGAEVVVLEVEW-GE-AVDPEEVEEALD-----KDPDIKAVAVVHNET 142 (383)
T ss_pred EEEEeCChHHHHHHHHHHHhCCceEEEeCCC-CC-CCCHHHHHHHHh-----cCCCccEEEEEeccC
Confidence 4455556666777787888877665552233 33 456776655554 112455999999985
No 432
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=35.65 E-value=1.1e+02 Score=41.22 Aligned_cols=57 Identities=21% Similarity=0.323 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHH
Q 001026 1075 GNFCKLLKEFLSYAEGEVRSLALLYS-----SVGRNADALAQYFGEDPARCPFEQVVSTLLNFVK 1134 (1184)
Q Consensus 1075 d~f~~~m~~Fl~~a~~~l~~L~~~~~-----~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~ 1134 (1184)
..|.+.+...++..++.+.+|...-. .+.+....||.|||...++ +-++..|-+|+.
T Consensus 566 ~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksN---D~iLshLiTfLN 627 (1431)
T KOG1240|consen 566 QNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSN---DVILSHLITFLN 627 (1431)
T ss_pred cccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccc---cchHHHHHHHhc
Confidence 45666677777777777766654332 2345688999999987655 344555555554
No 433
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=35.63 E-value=2.6e+02 Score=35.05 Aligned_cols=13 Identities=8% Similarity=0.289 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 001026 1122 FEQVVSTLLNFVK 1134 (1184)
Q Consensus 1122 ~e~ff~~l~~F~~ 1134 (1184)
++++|+.+.+.++
T Consensus 444 l~~l~~~~~~n~~ 456 (533)
T COG1283 444 LDALFALTLENLR 456 (533)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 434
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=35.57 E-value=3.5e+02 Score=33.93 Aligned_cols=36 Identities=8% Similarity=0.013 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCC
Q 001026 1085 LSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARC 1120 (1184)
Q Consensus 1085 l~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~ 1120 (1184)
+.++.++...+......+++.|.+.|.-||-.....
T Consensus 140 ~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~G~ni 175 (507)
T PF05600_consen 140 LEDLDKKEEELQRSAAEARERYKKACKQLGIKGENI 175 (507)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCccchh
Confidence 344555555566666667777777777777655443
No 435
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=35.54 E-value=4.8e+02 Score=32.77 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 001026 1081 LKEFLSYAEGEVRSLA 1096 (1184)
Q Consensus 1081 m~~Fl~~a~~~l~~L~ 1096 (1184)
|..=+..++.++..+.
T Consensus 342 L~~eL~~~r~eLea~~ 357 (522)
T PF05701_consen 342 LEAELNKTRSELEAAK 357 (522)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444443333
No 436
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=35.49 E-value=7.7e+02 Score=30.71 Aligned_cols=22 Identities=14% Similarity=0.296 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHhhhhcCCCCC
Q 001026 987 KLKRIMQTILSLGNALNHGTAR 1008 (1184)
Q Consensus 987 ~L~~lL~~IL~iGN~LN~gt~r 1008 (1184)
.+-+.+..|..+|-+||..+.+
T Consensus 105 qv~~~~d~vvql~hels~k~el 126 (596)
T KOG4360|consen 105 QVDAPWDRVVQLGHELSRKDEL 126 (596)
T ss_pred hhcchHHHHHHhhhhhhhhhhh
Confidence 3556677788899999988744
No 437
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=35.42 E-value=7.8e+02 Score=29.81 Aligned_cols=19 Identities=26% Similarity=0.097 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 001026 1081 LKEFLSYAEGEVRSLALLY 1099 (1184)
Q Consensus 1081 m~~Fl~~a~~~l~~L~~~~ 1099 (1184)
|-+-+++.+.+-+.|++.|
T Consensus 206 LwKrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 206 LWKRMDKLEQEKRYLQKKL 224 (552)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444
No 438
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=35.42 E-value=5.1e+02 Score=29.41 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhhhcCCCCCcce
Q 001026 988 LKRIMQTILSLGNALNHGTARGSA 1011 (1184)
Q Consensus 988 L~~lL~~IL~iGN~LN~gt~rG~A 1011 (1184)
.-.|=++++..|+-|..++..|.|
T Consensus 59 ~~~Lgq~M~e~~~~lg~~s~~g~a 82 (246)
T cd07618 59 LTALAQNMQEGSAQLGEESLIGKM 82 (246)
T ss_pred HHHHHHHHHHHHhcCCCCccHHHH
Confidence 444555677788888887655543
No 439
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.41 E-value=7.3e+02 Score=32.93 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=26.5
Q ss_pred hhcCCCCCcceeeeeccchhchhcccccCCcchHHHHHHH
Q 001026 1001 ALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCK 1040 (1184)
Q Consensus 1001 ~LN~gt~rG~A~GFkL~SL~KL~dtKs~d~k~TLLhflvk 1040 (1184)
|+|.|+...+-.||.|+-+..|.---+++...+-+.+|.+
T Consensus 18 ~~n~~~d~sn~~G~lInvi~nL~~Se~~e~re~ek~~Led 57 (982)
T KOG3691|consen 18 YVNYGTDMSNELGLLINVIRNLVGSEDTEPRETEKERLED 57 (982)
T ss_pred cccccCCcccccchhhhHHHhhccCCcccHHHHHHHHHHH
Confidence 7899987777789988877777644444444444444444
No 440
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=35.38 E-value=7.4e+02 Score=28.49 Aligned_cols=31 Identities=16% Similarity=0.360 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhCC
Q 001026 1085 LSYAEGEVRSLALLYSSVGRNA-----DALAQYFGE 1115 (1184)
Q Consensus 1085 l~~a~~~l~~L~~~~~~~~~~~-----~~l~~yFGE 1115 (1184)
++....++..|+..+...++.+ ...++++|.
T Consensus 137 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~ 172 (301)
T PF14362_consen 137 IARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGT 172 (301)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3334444444444444433332 223566774
No 441
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.38 E-value=1.8e+02 Score=31.98 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCC
Q 001026 1094 SLALLYSSVGRNADALAQYFGEDPAR 1119 (1184)
Q Consensus 1094 ~L~~~~~~~~~~~~~l~~yFGEd~~~ 1119 (1184)
.|.+.+..+.+.|..+.++|+|-++.
T Consensus 74 ~L~~Av~~tg~~y~~IG~~faeQpk~ 99 (207)
T cd07670 74 GLNQAIAFTGEAYEAIGELFAEQPRQ 99 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 67788888899999999999998765
No 442
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=35.33 E-value=4.8e+02 Score=34.60 Aligned_cols=11 Identities=18% Similarity=0.096 Sum_probs=5.0
Q ss_pred CCceeeeCcEE
Q 001026 14 DGLLEISERVF 24 (1184)
Q Consensus 14 lDLtyIT~RIi 24 (1184)
||+.+|.+.|-
T Consensus 9 Le~~~i~~~l~ 19 (782)
T PRK00409 9 LEFNKIKEQLK 19 (782)
T ss_pred CCHHHHHHHHH
Confidence 44444444443
No 443
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=35.32 E-value=6.5e+02 Score=27.81 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1085 LSYAEGEVRSLALLYSSVGRNADA 1108 (1184)
Q Consensus 1085 l~~a~~~l~~L~~~~~~~~~~~~~ 1108 (1184)
.+.+...+.+++..|.++-..|.+
T Consensus 78 rdq~~~dL~s~E~sfsdl~~ryek 101 (207)
T PF05010_consen 78 RDQAYADLNSLEKSFSDLHKRYEK 101 (207)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344555555555555555554443
No 444
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=35.30 E-value=2.3e+02 Score=27.63 Aligned_cols=80 Identities=13% Similarity=0.194 Sum_probs=46.7
Q ss_pred cccCCcCCCCCceeEEEEEecCCCcccCCCCcEEEeCccCcccee-eecccCccEEEEeccccccCCeEEEEEecCCcCc
Q 001026 181 RVIPNFDGEGGCCPIFRIYGQDPLMVADRTPKVLFSTPKRSKLVR-HYKQADCELVKIDIHCHIQGDVVLECISLDSDQE 259 (1184)
Q Consensus 181 r~VP~f~~~~gcrP~l~Iy~~~~~~~~~~~~~~lfss~~~~~~~~-~~~~~d~~~i~i~~~~~v~GDV~i~~~h~~~~~~ 259 (1184)
+.++..+..+.|-||++|+-. ++.+|.|....+... .|. +.+.|.+.- ....+.|++|+.+.. .
T Consensus 10 ~~L~~~d~~g~~Dpyv~v~~~---------~~~~~kT~~~~~t~nP~Wn----e~f~f~v~~-~~~~l~~~v~D~d~~-~ 74 (121)
T cd04042 10 RNLAARDRGGTSDPYVKFKYG---------GKTVYKSKTIYKNLNPVWD----EKFTLPIED-VTQPLYIKVFDYDRG-L 74 (121)
T ss_pred eCCCCcCCCCCCCCeEEEEEC---------CEEEEEeeeccCCCCCccc----eeEEEEecC-CCCeEEEEEEeCCCC-C
Confidence 344555656778999999864 234565543222221 232 235555532 356788888887643 2
Q ss_pred cceeEEEEEeeccccc
Q 001026 260 REEMMFRVMFNTAFIR 275 (1184)
Q Consensus 260 ~~~~~Fr~~FnT~FI~ 275 (1184)
....|.++.|...=+.
T Consensus 75 ~~~~iG~~~~~l~~l~ 90 (121)
T cd04042 75 TDDFMGSAFVDLSTLE 90 (121)
T ss_pred CCcceEEEEEEHHHcC
Confidence 3467888888776654
No 445
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=35.22 E-value=1.1e+03 Score=30.33 Aligned_cols=66 Identities=14% Similarity=0.065 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1085 LSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFE 1150 (1184)
Q Consensus 1085 l~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~e 1150 (1184)
++..+.+++.+...+..-++.+.+|..-|-.-++..+-..+..-|.+++..+++-.++..|-...-
T Consensus 449 ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DT 514 (594)
T PF05667_consen 449 IKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDT 514 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344444455555555554555555544444444455667888899999999998888877655543
No 446
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=35.15 E-value=3.9e+02 Score=31.55 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 001026 1042 QLKFLAEEMQAISKGLEKVVQELT 1065 (1184)
Q Consensus 1042 ~L~~L~~El~~l~k~L~kv~~el~ 1065 (1184)
.|..+.++|+.|+..=..+..+|.
T Consensus 196 ~Lr~~l~~l~~lk~eR~~l~~~Lk 219 (339)
T cd09238 196 TLRSNLEELEALGNERAGIEDMMK 219 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667666665555555554
No 447
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=35.05 E-value=1.3e+02 Score=39.85 Aligned_cols=78 Identities=19% Similarity=0.348 Sum_probs=39.2
Q ss_pred hHHHHHHH----HHHHHHHHHHHHHHHHHHH--HHHHHhhhccCC-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1033 TLMHYLCK----IQLKFLAEEMQAISKGLEK--VVQELTASENDG-EVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRN 1105 (1184)
Q Consensus 1033 TLLhflvk----i~L~~L~~El~~l~k~L~k--v~~el~~s~~d~-~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~ 1105 (1184)
.++..+++ ++|..++++|+++...+.. +..+|.....+. .....+...|+.-+++....+..|++....+.+.
T Consensus 610 ~~~~~l~~~~t~~dL~~~a~~L~~la~~~~~~~~~~~L~~~a~~l~~~~~~~v~pl~~~~~~L~~~l~~L~~~~~~l~~~ 689 (806)
T PF05478_consen 610 LYLEQLCKPLTPVDLPSLANQLEALANSLPNGWLRNALKNEAQNLRAIQKELVSPLEQLVSKLNQSLKKLDSLSSNLQNS 689 (806)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 33444444 5677777777776665543 333333222211 1113345555555666666666666555554444
Q ss_pred HHHHH
Q 001026 1106 ADALA 1110 (1184)
Q Consensus 1106 ~~~l~ 1110 (1184)
.+.++
T Consensus 690 i~~ll 694 (806)
T PF05478_consen 690 INILL 694 (806)
T ss_pred HHHHH
Confidence 44433
No 448
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=35.01 E-value=1.2e+02 Score=33.00 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1085 LSYAEGEVRSLALLYSSVGRNADALA 1110 (1184)
Q Consensus 1085 l~~a~~~l~~L~~~~~~~~~~~~~l~ 1110 (1184)
+...+..++.|.+.+.+++-.|..++
T Consensus 161 i~~lks~~~~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 161 ISRLKSEAEALKEEIENAELEFQSVA 186 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555555555443
No 449
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.99 E-value=9.4e+02 Score=29.55 Aligned_cols=66 Identities=11% Similarity=0.030 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1085 LSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFE 1150 (1184)
Q Consensus 1085 l~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~e 1150 (1184)
|++.+..+..+.+..+.-++.++.|+.-+.--+..++...+..-+.+|..+.++...+..|-.++.
T Consensus 347 IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~et 412 (521)
T KOG1937|consen 347 IQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEET 412 (521)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 455566666666666655555555555554444445566778888889998888888887655543
No 450
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=34.96 E-value=68 Score=31.34 Aligned_cols=29 Identities=17% Similarity=0.183 Sum_probs=19.1
Q ss_pred cCCCcEEEEEecCCCCCchHHHHHHHHHHhh
Q 001026 116 LGHQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1184)
Q Consensus 116 ~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~ 146 (1184)
.+.+..|||+|..|+.+ +..++.+|.+.|
T Consensus 76 ~~~~~~vv~~c~~g~~~--a~~~~~~l~~~G 104 (122)
T cd01448 76 ISNDDTVVVYDDGGGFF--AARAWWTLRYFG 104 (122)
T ss_pred CCCCCEEEEECCCCCcc--HHHHHHHHHHcC
Confidence 35667899999876333 555566666655
No 451
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=34.93 E-value=8.4e+02 Score=28.97 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 001026 1132 FVKMFVLAHEENC 1144 (1184)
Q Consensus 1132 F~~~fk~a~ee~~ 1144 (1184)
|..+|+..++++.
T Consensus 144 ~~~~F~~i~~~~~ 156 (336)
T PF05055_consen 144 FFHQFQSIHDQQS 156 (336)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 452
>PRK05320 rhodanese superfamily protein; Provisional
Probab=34.89 E-value=60 Score=36.82 Aligned_cols=50 Identities=10% Similarity=0.037 Sum_probs=29.7
Q ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEecCCCCCchHHHHHHHHHHhh
Q 001026 94 GCPLLTMETVHHFLRSSESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1184)
Q Consensus 94 ~~p~p~L~~l~~~c~~i~~WL~~d~~NVvvvHCk~Gkgr~tg~mia~yLly~~ 146 (1184)
|.-.++++.+.++...+..++....+.-++|+|.+| .| +..++.+|...|
T Consensus 150 GAiniPl~~f~~~~~~l~~~~~~~kdk~IvvyC~~G-~R--s~~Aa~~L~~~G 199 (257)
T PRK05320 150 GALDYRIDKFTEFPEALAAHRADLAGKTVVSFCTGG-IR--CEKAAIHMQEVG 199 (257)
T ss_pred CCEeCChhHhhhhHHHHHhhhhhcCCCeEEEECCCC-HH--HHHHHHHHHHcC
Confidence 433467777766655444444333456799999754 45 566667765443
No 453
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=34.87 E-value=2.9e+02 Score=26.91 Aligned_cols=48 Identities=25% Similarity=0.239 Sum_probs=33.7
Q ss_pred HHHHHhhhCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1106 ADALAQYFGEDPA-RCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKK 1153 (1184)
Q Consensus 1106 ~~~l~~yFGEd~~-~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~ekkk 1153 (1184)
-+++-..||+... .-+.+++...|..=+..+++..+-+.|+.+.++.+
T Consensus 49 ~kEi~~ilG~~~~i~Rt~~Qvv~~l~RRiDYV~~Ni~tleKql~~aE~k 97 (99)
T PF13758_consen 49 EKEIKEILGEGQGITRTREQVVDVLSRRIDYVQQNIETLEKQLEAAENK 97 (99)
T ss_pred HHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566678898665 23668888888888887777777777766655443
No 454
>PF09805 Nop25: Nucleolar protein 12 (25kDa); InterPro: IPR019186 Nop12 is a novel nucleolar protein required for pre-large subunit rRNA processing and in yeast normal rates of cell growth at low temperatures [].
Probab=34.86 E-value=55 Score=33.58 Aligned_cols=22 Identities=5% Similarity=0.082 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001026 1128 TLLNFVKMFVLAHEENCRQLEF 1149 (1184)
Q Consensus 1128 ~l~~F~~~fk~a~ee~~k~~e~ 1149 (1184)
.-.+|++-|.+-..+-++.+.+
T Consensus 19 ~R~eyLTGFhKRK~~Rrk~Aqe 40 (137)
T PF09805_consen 19 ARREYLTGFHKRKKQRRKKAQE 40 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777665444443333
No 455
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=34.82 E-value=2.8e+02 Score=28.48 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 001026 1129 LLNFVKMFVLAHEEN 1143 (1184)
Q Consensus 1129 l~~F~~~fk~a~ee~ 1143 (1184)
|.+++..|..+++|-
T Consensus 26 Lee~~ekl~~vv~er 40 (134)
T PRK10328 26 LEEMLEKFRVVTKER 40 (134)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 456
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=34.81 E-value=4e+02 Score=26.41 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCcc
Q 001026 1046 LAEEMQAISKGLEKVVQELTASENDGEV 1073 (1184)
Q Consensus 1046 L~~El~~l~k~L~kv~~el~~s~~d~~~ 1073 (1184)
+.+.+.++.+.+..++..+...++....
T Consensus 6 ~~~~~~~~~~ki~~ve~~V~~l~~~~~i 33 (116)
T PF10552_consen 6 LMQATEEHNEKIEEVENRVDDLEENMPI 33 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4455566666666676666665554433
No 457
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=34.80 E-value=89 Score=42.60 Aligned_cols=63 Identities=6% Similarity=-0.004 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1042 QLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGR 1104 (1184)
Q Consensus 1042 ~L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~ 1104 (1184)
.+..|..+++.+.+.+.+++++|....-.......|.++-..-+++.+.++..|++.+..++.
T Consensus 843 e~~rLekel~kl~Kel~kl~~~L~n~~f~~kap~~~veka~~kl~~~~~~l~~le~~l~~L~~ 905 (1052)
T PRK14900 843 ETARVDKEIGKVDQDLAVLERKLQNPSFVQNAPPAVVEKDRARAEELREKRGKLEAHRAMLSG 905 (1052)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456688999999999999999998765433445677777776678888888888888887775
No 458
>PHA03332 membrane glycoprotein; Provisional
Probab=34.78 E-value=4e+02 Score=35.79 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhCCCCC
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYS----SVGRNADALAQYFGEDPA 1118 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~----~~~~~~~~l~~yFGEd~~ 1118 (1184)
...+.+.|+.+++.+.++.+.+.+..+. ..+....|+..|++...+|..|+++++ .+...++.|++-.+|+-.
T Consensus 893 ia~mksaIg~tNaAV~~lsDai~klGnt---i~kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~ql~~~~~ 969 (1328)
T PHA03332 893 TAEMASKIGGLNARVDKTSDVITKLGDT---IAKISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQLKELGT 969 (1328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3445556666666666666655555443 245556777777777777777776554 466777888877777544
No 459
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=34.77 E-value=4.2e+02 Score=31.50 Aligned_cols=7 Identities=43% Similarity=0.581 Sum_probs=3.6
Q ss_pred ceeeeec
Q 001026 1010 SAVGFRL 1016 (1184)
Q Consensus 1010 ~A~GFkL 1016 (1184)
..+.|.+
T Consensus 82 ~~y~f~~ 88 (342)
T PF06632_consen 82 SEYSFDL 88 (342)
T ss_dssp SEEEEEE
T ss_pred CcceEEE
Confidence 4555554
No 460
>PRK03918 chromosome segregation protein; Provisional
Probab=34.74 E-value=4.6e+02 Score=34.90 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=14.5
Q ss_pred EEEEEecCCCCCchHHHHHH-HHHH
Q 001026 121 VLLMHCERGGWPVLAFMLAA-LLIY 144 (1184)
Q Consensus 121 VvvvHCk~Gkgr~tg~mia~-yLly 144 (1184)
+.||+-..|-|- |.++=|. |.+|
T Consensus 25 ~~~i~G~nG~GK-Stil~ai~~~l~ 48 (880)
T PRK03918 25 INLIIGQNGSGK-SSILEAILVGLY 48 (880)
T ss_pred cEEEEcCCCCCH-HHHHHHHHHHhc
Confidence 567888889888 4554443 3344
No 461
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=34.69 E-value=6.8e+02 Score=29.01 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1128 TLLNFVKMFVLAHEENCRQLEFERKK 1153 (1184)
Q Consensus 1128 ~l~~F~~~fk~a~ee~~k~~e~ekkk 1153 (1184)
.|..=++.+++.+.+..++.++++|.
T Consensus 363 el~~kf~~lkr~h~eEk~kle~~rr~ 388 (406)
T KOG3859|consen 363 ELHEKFDRLKRLHQEEKKKLEEKRKQ 388 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455666666655544444333
No 462
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=34.53 E-value=4.1e+02 Score=33.98 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHhhhhcC
Q 001026 986 IKLKRIMQTILSLGNALNH 1004 (1184)
Q Consensus 986 ~~L~~lL~~IL~iGN~LN~ 1004 (1184)
--||+||+-.+..|..|+.
T Consensus 305 YvlRrilRRa~r~~~~lg~ 323 (594)
T PRK01584 305 YVLRRLIRRSIRHAKKLGI 323 (594)
T ss_pred hHHHHHHHHHHHHHHHhCC
Confidence 3578888888887776654
No 463
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=34.43 E-value=5.1e+02 Score=30.88 Aligned_cols=31 Identities=23% Similarity=0.144 Sum_probs=17.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1073 VSGNFCKLLKEFLSYAEGEVRSLALLYSSVG 1103 (1184)
Q Consensus 1073 ~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~ 1103 (1184)
++..-.++|++-++.+++++...+..|+++-
T Consensus 174 vspeq~kKlqdrveK~k~evqktkekYektl 204 (472)
T KOG2856|consen 174 VSPEQLKKLQDRVEKCKQEVQKTKEKYEKTL 204 (472)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666666666666665555555443
No 464
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=34.34 E-value=8.8e+02 Score=30.57 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCC
Q 001026 1079 KLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCP 1121 (1184)
Q Consensus 1079 ~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~ 1121 (1184)
.+|++-+.+.+++|+.++........ +|.+.+..+..
T Consensus 353 ~Klee~i~elEEElk~~k~ea~~ar~------~~~~~e~ddiP 389 (832)
T KOG2077|consen 353 LKLEEKIRELEEELKKAKAEAEDARQ------KAKDDEDDDIP 389 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------hhccccccccc
Confidence 45555555555555555544444333 24455444444
No 465
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=34.26 E-value=6e+02 Score=32.17 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 001026 1045 FLAEEMQAISKGLEKVVQELTAS 1067 (1184)
Q Consensus 1045 ~L~~El~~l~k~L~kv~~el~~s 1067 (1184)
.+.+.++++...|+.+..++...
T Consensus 270 ~~~~~l~~~~~~l~d~~~~l~~~ 292 (563)
T TIGR00634 270 ELAEQVGNALTEVEEATRELQNY 292 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 466
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=34.21 E-value=1.3e+02 Score=29.53 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=17.2
Q ss_pred CCCcEEEEEecCCCCCchHHHHHHHHHHhh
Q 001026 117 GHQNVLLMHCERGGWPVLAFMLAALLIYRK 146 (1184)
Q Consensus 117 d~~NVvvvHCk~Gkgr~tg~mia~yLly~~ 146 (1184)
+.+..+||+|..| .| +.+++.+|...|
T Consensus 62 ~~~~~ivv~C~~G-~r--s~~aa~~L~~~G 88 (117)
T cd01522 62 GKDRPVLLLCRSG-NR--SIAAAEAAAQAG 88 (117)
T ss_pred CCCCeEEEEcCCC-cc--HHHHHHHHHHCC
Confidence 4566799999755 45 455566665544
No 467
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=34.19 E-value=2e+02 Score=29.00 Aligned_cols=31 Identities=19% Similarity=0.070 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1080 LLKEFLSYAEGEVRSLALLYSSVGRNADALA 1110 (1184)
Q Consensus 1080 ~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~ 1110 (1184)
.+-.++.+-.++++.|+.++.++++.|+..+
T Consensus 86 t~LellGEK~E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 86 TLLELLGEKSEEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555666666777777776666544
No 468
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=34.16 E-value=5.4e+02 Score=27.16 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhhhCCC
Q 001026 1099 YSSVGRNADALAQYFGED 1116 (1184)
Q Consensus 1099 ~~~~~~~~~~l~~yFGEd 1116 (1184)
+..+-....++..-++++
T Consensus 101 vq~l~~E~qk~~k~v~~~ 118 (155)
T PF07464_consen 101 VQSLVQESQKLAKEVSEN 118 (155)
T ss_dssp HHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444444444
No 469
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=34.10 E-value=57 Score=35.15 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhcCCC-----------cEEEEEe-cCCCCCchHHHHHHHHHHhhCC
Q 001026 101 ETVHHFLRSSESWLSLGHQ-----------NVLLMHC-ERGGWPVLAFMLAALLIYRKQF 148 (1184)
Q Consensus 101 ~~l~~~c~~i~~WL~~d~~-----------NVvvvHC-k~Gkgr~tg~mia~yLly~~~~ 148 (1184)
+.|-.+|..+..|+..+.. ..+.||. ..|.|| ||=+++.|++....+
T Consensus 88 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~H~~f~~IHPF~DGNGR-t~Rll~~l~L~~~g~ 146 (186)
T TIGR02613 88 SELAILLDDVRYWLQNGTFSPDEIAIRFHHRLVAIHPFPNGNGR-HARLATDLLLEQQGY 146 (186)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHheecCcCCCCcH-HHHHHHHHHHHHCCC
Confidence 6788889999999865321 4578998 669999 788887777776554
No 470
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=33.90 E-value=6.5e+02 Score=27.38 Aligned_cols=27 Identities=11% Similarity=0.179 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001026 1042 QLKFLAEEMQAISKGLEKVVQELTASE 1068 (1184)
Q Consensus 1042 ~L~~L~~El~~l~k~L~kv~~el~~s~ 1068 (1184)
.++.|..|+.+.+.-+..+...|....
T Consensus 68 iveqLe~ev~EAe~vV~ee~~sL~~aq 94 (188)
T PF05335_consen 68 IVEQLEQEVREAEAVVQEEKASLQQAQ 94 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666665554
No 471
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=33.89 E-value=5.3e+02 Score=26.30 Aligned_cols=57 Identities=21% Similarity=0.256 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001026 1045 FLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQ 1111 (1184)
Q Consensus 1045 ~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~ 1111 (1184)
.+..+++.|...++.+.+.=... .+..+.--+.|+..+..+.+.+..+.+.+.++..
T Consensus 24 ~v~~~l~~LEae~q~L~~kE~~r----------~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~ 80 (126)
T PF09403_consen 24 SVESELNQLEAEYQQLEQKEEAR----------YNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQ 80 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35555666666655554332211 2334444567777888888888777777766654
No 472
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=33.89 E-value=3e+02 Score=35.52 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=18.0
Q ss_pred HhhhhcCCCCCcceeeeeccchhchhcccc
Q 001026 998 LGNALNHGTARGSAVGFRLDSLLKLTDTRA 1027 (1184)
Q Consensus 998 iGN~LN~gt~rG~A~GFkL~SL~KL~dtKs 1027 (1184)
--|.||.-...-.-.|-+|..|+|..++++
T Consensus 243 ~r~~~n~p~~~y~~~~sklk~l~~~~~~~~ 272 (1185)
T KOG0388|consen 243 SRNGMNEPRPQYEMTGSKLKDLLKVYERRG 272 (1185)
T ss_pred hccCCCCCCcchhhhhhHHHHhhhhcccch
Confidence 346666655444555667766766666555
No 473
>PLN03237 DNA topoisomerase 2; Provisional
Probab=33.89 E-value=7.2e+02 Score=35.17 Aligned_cols=46 Identities=13% Similarity=0.068 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 001026 1089 EGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHE 1141 (1184)
Q Consensus 1089 ~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~e 1141 (1184)
+++++.|.++..+.+..++.|.. +...+.+...|..|...|.+..+
T Consensus 1125 ~E~~~kL~~~~~~k~~el~~l~~-------~t~~~lW~~DLd~f~~~~~~~~~ 1170 (1465)
T PLN03237 1125 LEKVQELCADRDKLNIEVEDLKK-------TTPKSLWLKDLDALEKELDKLDK 1170 (1465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566555555555555432 22334455667666666665443
No 474
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=33.74 E-value=5.4e+02 Score=31.61 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001026 1078 CKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYF 1113 (1184)
Q Consensus 1078 ~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yF 1113 (1184)
.-.|..-+..-+.+|+.|+.+-.++++....-+..+
T Consensus 448 clEmdk~LskKeeeverLQ~lkgelEkat~SALdlL 483 (527)
T PF15066_consen 448 CLEMDKTLSKKEEEVERLQQLKGELEKATTSALDLL 483 (527)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777778888777777776554444433
No 475
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=33.70 E-value=7.2e+02 Score=27.79 Aligned_cols=130 Identities=17% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHH---------HHHHHHHHHHH
Q 001026 1035 MHYLCKIQLKFLAE----EMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEG---------EVRSLALLYSS 1101 (1184)
Q Consensus 1035 Lhflvki~L~~L~~----El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~---------~l~~L~~~~~~ 1101 (1184)
|+-+.+.-++++.+ .+++|...-++..+.+.+..... ..|.+.|...-+.|.. -|..+...++.
T Consensus 3 ~~~lt~~~~~~~~~~~~P~~~~li~~~~~Y~kal~a~~~a~---~~~~dAl~kia~~A~~s~~sk~lG~~L~~i~~~~r~ 79 (223)
T cd07605 3 LNRLTENIYKNIKEQFNPVLRNLIKAGKKYQKALQALSQAA---KVFFDALAKIGELASQSRGSQELGEALKQIVDTHKS 79 (223)
T ss_pred HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001026 1102 VGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEKAVENEKLKTQKG 1168 (1184)
Q Consensus 1102 ~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~ekkk~ekeaekek~k~~~~ 1168 (1184)
+++..+.+...|.++=-. +++.=......++..+.+-++...|++.++-+|++.+..|-+.+.+++
T Consensus 80 ie~~l~~~~~~~~~~li~-pLe~k~e~d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~ 145 (223)
T cd07605 80 IEASLEQVAKAFHGELIL-PLEKKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKS 145 (223)
T ss_pred HHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
No 476
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=33.64 E-value=4.3e+02 Score=28.96 Aligned_cols=127 Identities=12% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHH
Q 001026 1048 EEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRS-LALLYSSVGRNADALAQYFGEDPARCPFEQVV 1126 (1184)
Q Consensus 1048 ~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~-L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff 1126 (1184)
++-....+.+.-|.+.....++ +..++...+.+..++..+.. +.+.-.++++..+... .-||....=-..+.
T Consensus 88 Dd~~rAqkAFdivkKA~k~l~n-----~~~rkr~~~~y~~ak~~~~~~~~ekkkklkKegkpt~--ieedDp~lfk~av~ 160 (250)
T KOG1150|consen 88 DDAERAQKAFDIVKKAYKLLEN-----DKIRKRCLDVYTAAKNRLEKVMSEKKKKLKKEGKPTI--IEEDDPELFKQAVY 160 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--ccccCHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhccchhhhcCcCccC
Q 001026 1127 STLLNFVKMFVLAHEENCRQLEFERKKAEKAV-ENEKLKTQKGQSEHLVQNPLKSS 1181 (1184)
Q Consensus 1127 ~~l~~F~~~fk~a~ee~~k~~e~ekkk~ekea-ekek~k~~~~e~~~~~q~~~~~~ 1181 (1184)
......+.++.+-+++...++.+|++++..++ +.++......|.++-..++-++.
T Consensus 161 ~~~mklfae~erkRk~~e~r~~~eRkr~re~eIeaeek~Kr~~E~qKnfEEsRd~R 216 (250)
T KOG1150|consen 161 KQVMKLFAELERKRKELEARANEERKRQREEEIEAEEKRKREREWQKNFEESRDGR 216 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc
No 477
>PLN02372 violaxanthin de-epoxidase
Probab=33.58 E-value=3.8e+02 Score=32.45 Aligned_cols=25 Identities=0% Similarity=0.033 Sum_probs=16.2
Q ss_pred HHcchhHHHHHHHHHHHhhhhcCCC
Q 001026 982 VRNSIKLKRIMQTILSLGNALNHGT 1006 (1184)
Q Consensus 982 L~~S~~L~~lL~~IL~iGN~LN~gt 1006 (1184)
+-++..|-.+...+|.--|.+....
T Consensus 160 ~fen~~vd~fn~Cav~~k~CV~~~a 184 (455)
T PLN02372 160 LFENKVVDEFNECAVTRKKCVPQKS 184 (455)
T ss_pred hhccHhHHHHHhhhhhccccccccc
Confidence 5666777777777776666665443
No 478
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=33.52 E-value=1.5e+03 Score=31.40 Aligned_cols=14 Identities=14% Similarity=0.100 Sum_probs=8.0
Q ss_pred CCcccceEEEEecc
Q 001026 296 FSKEFRAEVLFSEM 309 (1184)
Q Consensus 296 fp~dF~vel~F~~~ 309 (1184)
+++-|+|-+.+.+.
T Consensus 1255 ~~~i~kV~m~~~~~ 1268 (1605)
T KOG0260|consen 1255 IPDIFKVYMSPTED 1268 (1605)
T ss_pred ccccceEEEeecCC
Confidence 55566666655544
No 479
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=33.46 E-value=6.1e+02 Score=26.89 Aligned_cols=29 Identities=17% Similarity=0.110 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 001026 1086 SYAEGEVRSLALLYSSVGRNADALAQYFG 1114 (1184)
Q Consensus 1086 ~~a~~~l~~L~~~~~~~~~~~~~l~~yFG 1114 (1184)
...-.+++.|+..+..+.....++-.-|.
T Consensus 44 ~~~I~evD~Le~~er~aR~rL~eVS~~f~ 72 (159)
T PF05384_consen 44 SEVIEEVDKLEKRERQARQRLAEVSRNFD 72 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33344455555555555555555555553
No 480
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=33.37 E-value=9e+02 Score=30.73 Aligned_cols=38 Identities=26% Similarity=0.189 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 001026 1079 KLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGED 1116 (1184)
Q Consensus 1079 ~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd 1116 (1184)
+.|...-..-+..+..|...|+++++...+-..-||.-
T Consensus 129 ~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a 166 (569)
T PRK04778 129 QELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPA 166 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccch
Confidence 34444455667778888888888888777777777773
No 481
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=33.36 E-value=78 Score=29.85 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=38.9
Q ss_pred HHHHHHHHhhhCCCCcEEEEEeccCCcCcccccccccCCceEEecCCCCCCCCCCcHHHHHHHHHHHHHHHhcCCCcEEE
Q 001026 44 LGGIVGQLREYFPEASFMVFNFREGEHQSQIGQVLSEYDMTVMDYPRHYEGCPLLTMETVHHFLRSSESWLSLGHQNVLL 123 (1184)
Q Consensus 44 i~dV~~fL~~~H~~~~y~V~Nl~ee~~~~~~~~~~~~f~~~V~~~P~~~~~~p~p~L~~l~~~c~~i~~WL~~d~~NVvv 123 (1184)
.+++...|++.+.+ ..|..++.... |+.. +. .|.-..+++.+..+...+..+ +.+..+|
T Consensus 4 ~~~l~~~~~~~~~~--~~iiDvR~~~e----------~~~~--hI----~ga~~ip~~~~~~~~~~~~~~---~~~~~vv 62 (101)
T cd01528 4 VAELAEWLADEREE--PVLIDVREPEE----------LEIA--FL----PGFLHLPMSEIPERSKELDSD---NPDKDIV 62 (101)
T ss_pred HHHHHHHHhcCCCC--CEEEECCCHHH----------HhcC--cC----CCCEecCHHHHHHHHHHhccc---CCCCeEE
Confidence 34566666553333 67888865432 2111 11 122223444444443322221 4566899
Q ss_pred EEecCCCCCchHHHHHHHHHHhh
Q 001026 124 MHCERGGWPVLAFMLAALLIYRK 146 (1184)
Q Consensus 124 vHCk~Gkgr~tg~mia~yLly~~ 146 (1184)
|+|..| .| +..++.+|...|
T Consensus 63 ~~c~~g-~r--s~~~~~~l~~~G 82 (101)
T cd01528 63 VLCHHG-GR--SMQVAQWLLRQG 82 (101)
T ss_pred EEeCCC-ch--HHHHHHHHHHcC
Confidence 999754 45 445555555433
No 482
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=33.36 E-value=6e+02 Score=28.29 Aligned_cols=10 Identities=30% Similarity=0.212 Sum_probs=4.5
Q ss_pred hhchhccccc
Q 001026 1019 LLKLTDTRAR 1028 (1184)
Q Consensus 1019 L~KL~dtKs~ 1028 (1184)
|.||.-+|+.
T Consensus 15 ~~Kle~ik~I 24 (286)
T KOG4451|consen 15 LQKLELIKSI 24 (286)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 483
>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.30 E-value=1.8e+02 Score=35.30 Aligned_cols=201 Identities=16% Similarity=0.185 Sum_probs=0.0
Q ss_pred hcCCCchhhhhhhhhhccchHHH-----------------HHcchhHHHHHHH-----HHHHhhhhcCCCCCcceeeeec
Q 001026 959 LMKVPRVESKLRVFSFKIQFQTQ-----------------VRNSIKLKRIMQT-----ILSLGNALNHGTARGSAVGFRL 1016 (1184)
Q Consensus 959 L~~IPrl~~RL~~l~fk~~F~~~-----------------L~~S~~L~~lL~~-----IL~iGN~LN~gt~rG~A~GFkL 1016 (1184)
++-||.+-.|...-.|.+.|-+. |.+++.|..+|.. .-..|...-.+...++++-|.+
T Consensus 239 ~i~vp~Lpdkq~~gr~Ee~fi~~rr~~l~~wm~~~~~hpvlsq~evf~hFl~c~~dek~Wk~GKRkAEkDe~~g~~~~~~ 318 (490)
T KOG2528|consen 239 LIPVPPLPDKQVTGRFEEDFIEKRRKGLQWWMNHMCRHPVLSQCEVFQHFLTCPTDEKAWKQGKRKAEKDELVGNFLLTI 318 (490)
T ss_pred cccCCCCCccccccchhHHHHHHHHHHHHHHHHHhhcchHhhhhHHHHHHHcCCcccccccccccccccCCcccceeecc
Q ss_pred cchhchhcccccCCcchHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHH
Q 001026 1017 DSLLKLTDTRARNNKMTLMHYLCK------IQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEG 1090 (1184)
Q Consensus 1017 ~SL~KL~dtKs~d~k~TLLhflvk------i~L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~ 1090 (1184)
. =.+ .|.-..+.+.....-.++ .+|.+...|+. ++.+.-+++|..+.. +.|...-+.|.-.-..
T Consensus 319 ~-p~~-ld~~~ve~~ve~~~~f~k~md~~~~~l~~~~~~~~--k~~~~~~kke~qk~g------~a~~~l~~~f~~d~~~ 388 (490)
T KOG2528|consen 319 S-PAP-LDLQEVEMQVERFKRFTKKMDDAVRQLNTTANEFW--KRKVGGFKKEYQKMG------SAFQTLAQAFEIDPTV 388 (490)
T ss_pred C-Ccc-cchHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHH--HHhcccchHHHHHHH------HHHHHHHHhhhcCccc
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 001026 1091 EVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVS-------TLLNFVKMFVLAHEENCRQLEFERKKAEK-AVENEK 1162 (1184)
Q Consensus 1091 ~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~-------~l~~F~~~fk~a~ee~~k~~e~ekkk~ek-eaekek 1162 (1184)
.-..|.+....+...|.++.+.|+|-+++ .++.+.. .|.+|.+-+........|.++-++...+- .+|..-
T Consensus 389 ~s~~L~~ai~~~g~~y~~Ig~lfa~qpk~-Dl~p~~d~l~~y~G~l~nfpDII~~hK~A~~k~kes~~~~~~g~~aem~h 467 (490)
T KOG2528|consen 389 DSRPLNEAIGLTGDAYHEIGELFAEQPKQ-DLDPVMDLLVLYQGHLQNFPDIIHVHKGALAKVKESEQLVAEGFKAEMQH 467 (490)
T ss_pred cccchhhhhhhhhHHHHHHHHHhhccccc-chhHHHHHHHHhhcccccccchhhhhHHHHHHHHHHHHHhhhhHHHHHHH
Q ss_pred HHhhhccc
Q 001026 1163 LKTQKGQS 1170 (1184)
Q Consensus 1163 ~k~~~~e~ 1170 (1184)
..+.+..+
T Consensus 468 f~~~~~~~ 475 (490)
T KOG2528|consen 468 FLQEREYD 475 (490)
T ss_pred HHhhcccc
No 484
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.30 E-value=5.9e+02 Score=33.43 Aligned_cols=185 Identities=14% Similarity=0.040 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhhhhcCCCCCcceeeeeccchhchhcccccCCcchHHHHHHH--------------------HHHHH
Q 001026 986 IKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKMTLMHYLCK--------------------IQLKF 1045 (1184)
Q Consensus 986 ~~L~~lL~~IL~iGN~LN~gt~rG~A~GFkL~SL~KL~dtKs~d~k~TLLhflvk--------------------i~L~~ 1045 (1184)
+.+..++.--+.--||+|.-..-..-.-|..-+.-.-...| ..++.-|=+++++ -.-+.
T Consensus 569 ~~~~~lItkrvGke~f~srL~~lsr~e~ysra~~kqq~~l~-~~~k~~lD~~f~kL~kele~~i~k~ls~~~eee~~~~~ 647 (970)
T KOG0946|consen 569 SDVYQLITKRVGKENFISRLQRLSRHELYSRASMKQQPQLK-SNTKLALDFEFKKLFKELEGLIAKLLSSKTEEEEQTQL 647 (970)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhhHhHHHHHHhhccCccCC-CCchhhhhHHHHHHHHHHHHHHHHHhcCCCccchhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-CCCCCCCHHH
Q 001026 1046 LAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFG-EDPARCPFEQ 1124 (1184)
Q Consensus 1046 L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFG-Ed~~~~~~e~ 1124 (1184)
..++++++..-..+++..+.....+...-..-.+.|+--.++.++++........++++++.-|-.-|| ...+..++-+
T Consensus 648 ~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q 727 (970)
T KOG0946|consen 648 AEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQ 727 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhccch
Q 001026 1125 VVSTLLNFVKMFVLAHEENCRQL-EFERKKAEKAVENEKLKTQKGQSE 1171 (1184)
Q Consensus 1125 ff~~l~~F~~~fk~a~ee~~k~~-e~ekkk~ekeaekek~k~~~~e~~ 1171 (1184)
-...+..--....+++.++.+-. +++.-.++.++.++-++..++..+
T Consensus 728 ~~e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~ 775 (970)
T KOG0946|consen 728 GAEASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQR 775 (970)
T ss_pred HHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
No 485
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=33.21 E-value=6.7e+02 Score=28.43 Aligned_cols=110 Identities=22% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHH--------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1034 LMHYLCK--------------------------------------------------IQLKFLAEEMQAISKGLEKVVQE 1063 (1184)
Q Consensus 1034 LLhflvk--------------------------------------------------i~L~~L~~El~~l~k~L~kv~~e 1063 (1184)
||+++|+ .+++.|.++++++.+-.+...+.
T Consensus 11 FL~W~c~~V~~~NvLS~~El~~~~~L~~~GkiLeg~~Ld~aL~~~~~~~~~~~~~~e~~le~Le~el~~l~~~~~~~~~~ 90 (256)
T PF14932_consen 11 FLDWFCSNVNESNVLSEEELQAFEELQKSGKILEGEALDEALKTISAFSPKLLELEEEDLEALEEELEALQEYKELYEQL 90 (256)
T ss_pred HHHHHHccCChhccCCHHHHHHHHHHHHcCCcCCHHHHHHHHHHcccccCCccccchHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhhcc---------------CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-------CCC
Q 001026 1064 LTASEN---------------DGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPA-------RCP 1121 (1184)
Q Consensus 1064 l~~s~~---------------d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~-------~~~ 1121 (1184)
+..... .......+.+....+...+...-..|+....++.+....+..++..+.. ..+
T Consensus 91 ~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l~~~~~~~~~~~~~~~~~flsq~~ 170 (256)
T PF14932_consen 91 RNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKLASELAHAHSGQQQNPPVFLSQMP 170 (256)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCchhhhCC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001026 1122 FEQVVSTLLNFVKMFVLAHEEN 1143 (1184)
Q Consensus 1122 ~e~ff~~l~~F~~~fk~a~ee~ 1143 (1184)
++.|+..-..|...|..-.++.
T Consensus 171 l~~Y~~~ee~~t~~L~~y~kKq 192 (256)
T PF14932_consen 171 LEQYLSQEEQFTKYLTSYTKKQ 192 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
No 486
>PF05890 Ebp2: Eukaryotic rRNA processing protein EBP2; InterPro: IPR008610 This family consists of several eukaryotic rRNA processing protein EBP2 sequences. Ebp2p is required for the maturation of 25S rRNA and 60S subunit assembly. Ebp2p may be one of the target proteins of Rrs1p for executing the signal to regulate ribosome biogenesis [].
Probab=33.04 E-value=87 Score=35.88 Aligned_cols=91 Identities=18% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 001026 1083 EFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEF-ERKKAEKAVENE 1161 (1184)
Q Consensus 1083 ~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~-ekkk~ekeaeke 1161 (1184)
.|+..|..-+..-...+.++.--|..=-.||.| .+..++....|..=+..-..+.+...+++.. +.||-.++.+.+
T Consensus 80 aFy~qAl~av~~a~~~L~~~gip~~RP~DYfAE---MvKSD~HM~KVr~kLl~~~~~ie~~E~~rk~Re~KKfgKqvQ~e 156 (271)
T PF05890_consen 80 AFYKQALEAVKEARPRLKKLGIPFKRPDDYFAE---MVKSDEHMEKVRQKLLKEQKRIEASEEARKQRELKKFGKQVQVE 156 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCCCcchHH---HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhccchhhhcC
Q 001026 1162 KLKTQKGQSEHLVQN 1176 (1184)
Q Consensus 1162 k~k~~~~e~~~~~q~ 1176 (1184)
+++++.+++.+.+..
T Consensus 157 k~~eR~keKk~~le~ 171 (271)
T PF05890_consen 157 KLQERAKEKKEMLEK 171 (271)
T ss_pred HHHHHHHHHHHHHHH
No 487
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=33.03 E-value=5.8e+02 Score=28.43 Aligned_cols=114 Identities=11% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHH-HhhhccCCccchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 001026 1041 IQLKFLAEEMQ-AISKGLEKVVQE-LTASENDGEVSGNFC-KLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDP 1117 (1184)
Q Consensus 1041 i~L~~L~~El~-~l~k~L~kv~~e-l~~s~~d~~~~d~f~-~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~ 1117 (1184)
+++.+.-.+++ ++...++.+..| |...++..+.+-.|. ..++.|..+-+.+.+.|++...++++..++-..-=+-..
T Consensus 71 ~qi~ev~r~i~~~le~~lK~Fh~Ell~~LE~k~elD~kyi~a~~Kkyq~E~k~k~dsLeK~~seLKK~RRKsqg~kn~~k 150 (226)
T cd07645 71 MEISDVHKKLNDSLEENFKKFHREIIAELERKTDLDVKYMTATLKRYQTEHKNKLDSLEKSQADLKKIRRKSQGRRNASK 150 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchh
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1118 ARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKA 1154 (1184)
Q Consensus 1118 ~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~ekkk~ 1154 (1184)
....-.+++..+..--.++...+.+-++.+..|+||+
T Consensus 151 ye~Ke~~~~e~~~~~q~el~~f~~~~~k~AL~EErRR 187 (226)
T cd07645 151 YEHKENEYLETVTSRQSDIQKFIADGCREALLEEKRR 187 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=32.99 E-value=8.5e+02 Score=28.43 Aligned_cols=155 Identities=11% Similarity=-0.028 Sum_probs=0.0
Q ss_pred hhchhcccccCCcchHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHH
Q 001026 1019 LLKLTDTRARNNKMTLMHYLCK----IQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRS 1094 (1184)
Q Consensus 1019 L~KL~dtKs~d~k~TLLhflvk----i~L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~ 1094 (1184)
|.||..--+.-|++..-.-.++ --...+..+|.+|.+.|.+....-.-...- ..-...+..-.++|....+.
T Consensus 19 LEkLN~sTDdIN~~E~~Le~ar~~Fretqv~~t~kl~el~Kk~~k~I~ksrpf~el----k~~er~~r~e~QkAa~~FeR 94 (426)
T KOG2008|consen 19 LEKLNQSTDDINRRETELEDARQKFRETQVEATVKLDELVKKIGKAIEKSRPFWEL----KRVERQARLEAQKAAQDFER 94 (426)
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHH----HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhh
Q 001026 1095 LALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEKAVENEKLKTQKGQSEHLV 1174 (1184)
Q Consensus 1095 L~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~ekkk~ekeaekek~k~~~~e~~~~~ 1174 (1184)
....+..+++.+.-+-.-+.+|.+..-..++..+|..-+..++.+-.+..+.+.--+.++.+-...+.+.++-.++.+..
T Consensus 95 at~vl~~AkeqVsl~~~sL~~~~~~~~~~~~~evlnh~~qrV~EaE~e~t~aE~~Has~a~~~l~l~~~~R~~ek~n~~A 174 (426)
T KOG2008|consen 95 ATEVLRAAKEQVSLAEQSLLEDDKRQFDSAWQEVLNHATQRVMEAEQEKTRAELVHASTAARYLALMGRMRQLEKKNKRA 174 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q ss_pred cCc
Q 001026 1175 QNP 1177 (1184)
Q Consensus 1175 q~~ 1177 (1184)
.+.
T Consensus 175 IkK 177 (426)
T KOG2008|consen 175 IKK 177 (426)
T ss_pred Hhh
No 489
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=32.99 E-value=2.5e+02 Score=36.23 Aligned_cols=110 Identities=12% Similarity=-0.010 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC
Q 001026 1042 QLKFLAEEMQAISKGLEKV--VQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPAR 1119 (1184)
Q Consensus 1042 ~L~~L~~El~~l~k~L~kv--~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~ 1119 (1184)
.+..+.+++.++.+.|..+ ..++..........+.=...++.-+...+.+++.+++..+++++.+.++.....+....
T Consensus 399 ~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 478 (650)
T TIGR03185 399 ELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKINAFEL 478 (650)
T ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1120 CPFEQVVSTLLNFVKMFVLAHEENCRQLEFER 1151 (1184)
Q Consensus 1120 ~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~ek 1151 (1184)
...-.....+.+.+..|.....+.....-+++
T Consensus 479 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~ 510 (650)
T TIGR03185 479 ERAITIADKAKKTLKEFREKLLERKLQQLEEE 510 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=32.96 E-value=1.7e+02 Score=37.05 Aligned_cols=141 Identities=18% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCC
Q 001026 1042 QLKFLAEEMQAISKGLEKVVQELTASENDGEV-SGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARC 1120 (1184)
Q Consensus 1042 ~L~~L~~El~~l~k~L~kv~~el~~s~~d~~~-~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~ 1120 (1184)
.++.+..+-..+ ..|..+...+....++... .+.+...+..+......-...|..+-...++.....+.--.++..+.
T Consensus 214 ~~~~~~~~~~~~-~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~e~~~~ 292 (582)
T PF09731_consen 214 EYKELVEEEPEV-QELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEEEEEELERALEEQREELLSK 292 (582)
T ss_pred hhhhhhhhhhhH-HHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhcCcCccCCC
Q 001026 1121 PFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEKAVENEKLKTQKGQSEHLVQNPLKSSTI 1183 (1184)
Q Consensus 1121 ~~e~ff~~l~~F~~~fk~a~ee~~k~~e~ekkk~ekeaekek~k~~~~e~~~~~q~~~~~~~~ 1183 (1184)
-.+++...+.+......+.+.+...+++++.+++-+++-+.+++++...-+...++.+....|
T Consensus 293 ~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~ 355 (582)
T PF09731_consen 293 LREELEQELEEKRAELEEELREEFEREREELEEKYEEELRQELKRQEEAHEEHLKNELREQAI 355 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=32.92 E-value=3e+02 Score=30.24 Aligned_cols=134 Identities=11% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCC----ccchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhCC--
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELTASENDG----EVSGNFCKLLKEFLSYAEGEV-RSLALLYSSVGRNADALAQYFGE-- 1115 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~~s~~d~----~~~d~f~~~m~~Fl~~a~~~l-~~L~~~~~~~~~~~~~l~~yFGE-- 1115 (1184)
...+.+.|+.-...|.++++.+.+.-+.+ +..+.+.+.+..|-+.+..+= ..+-..+-+..--.++|...|--
T Consensus 4 v~~lee~le~d~~~L~k~kk~vkai~~sg~~hv~ne~~~~~~le~lg~~~l~~~~~~~~t~fl~~av~tkel~al~k~L~ 83 (213)
T cd07640 4 AAALEESLEGDQASLQRIKKIVKAIHNSGLNHVENEEQYTEALENLGNSHLSQNNHELSTGFLNLAVFTREVTALFKNLV 83 (213)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----CCCCCCHHHHHH----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhccchhhhcC
Q 001026 1116 ----DPARCPFEQVVS----TLL-NFVKMFVLAHEENCRQLEFERKKAEKAV--------ENEKLKTQKGQSEHLVQN 1176 (1184)
Q Consensus 1116 ----d~~~~~~e~ff~----~l~-~F~~~fk~a~ee~~k~~e~ekkk~ekea--------ekek~k~~~~e~~~~~q~ 1176 (1184)
+-..++++.|++ .+. +.-+.|.+++++...+.-+.++..+..+ +-+++...-....+..|+
T Consensus 84 qn~nniv~fpldsflK~dlr~~K~D~KK~FeK~skDyE~kl~K~ak~~r~k~~~~g~~~~e~eEaae~l~~eRr~Fql 161 (213)
T cd07640 84 QNLNNIVSFPLDSLLKGQLRDGRLESKKQMEKAWKDYEAKIGKLEKERREKQKQHGLIRLDMTDTAEDMQRERRNFQL 161 (213)
T ss_pred HhhhhhhccchHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHhccccccchhcccccccHHHHHHHHHHHHHHHHH
No 492
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.78 E-value=5.5e+02 Score=29.05 Aligned_cols=132 Identities=11% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 001026 1034 LMHYLCKIQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYS----SVGRNADAL 1109 (1184)
Q Consensus 1034 LLhflvki~L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~----~~~~~~~~l 1109 (1184)
+-+|+-+ |.+.|..+.+-+.++.++..........-.....-..........-+..+...++ .+.+....+
T Consensus 59 mkey~d~-----L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l 133 (243)
T cd07666 59 MNEYVEA-----FSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGL 133 (243)
T ss_pred HHHHHHH-----HHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhc
Q 001026 1110 AQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEKAVENEKLKTQKGQSEHLVQ 1175 (1184)
Q Consensus 1110 ~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~ekkk~ekeaekek~k~~~~e~~~~~q 1175 (1184)
..-|.+ .+.++...+...-..|++-......-+..++..+.+.++|.+++..-++-+..++
T Consensus 134 ~~~f~~-----~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve 194 (243)
T cd07666 134 SEQLLP-----VIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVE 194 (243)
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
No 493
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=32.78 E-value=5.9e+02 Score=32.13 Aligned_cols=130 Identities=16% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCC
Q 001026 1041 IQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPARC 1120 (1184)
Q Consensus 1041 i~L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~~~ 1120 (1184)
..+..|..+|....+.+..+..+.............=.+.|..-+.++..+|..|+..+..+.....+.-...+..
T Consensus 171 ~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~l---- 246 (546)
T PF07888_consen 171 EEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKL---- 246 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhccchhhhcC
Q 001026 1121 PFEQVVSTLLNFVKMFVLAHEENCRQLE-----FERKKAEKAVENEKLKTQKGQSEHLVQN 1176 (1184)
Q Consensus 1121 ~~e~ff~~l~~F~~~fk~a~ee~~k~~e-----~ekkk~ekeaekek~k~~~~e~~~~~q~ 1176 (1184)
.++-..+......++.-.++...+.+ +.+..++.++.+++++.....-++-.|+
T Consensus 247 --k~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~ 305 (546)
T PF07888_consen 247 --KELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQE 305 (546)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>PRK01156 chromosome segregation protein; Provisional
Probab=32.78 E-value=5.4e+02 Score=34.46 Aligned_cols=208 Identities=11% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHH-HhcCCCchhhhhhhhhhccchHHHHH-cchhHHHHHHHHHHHhhhhcCCCCCcceeeeeccchhchhccccc-CCc
Q 001026 955 FFL-ELMKVPRVESKLRVFSFKIQFQTQVR-NSIKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRAR-NNK 1031 (1184)
Q Consensus 955 Fll-~L~~IPrl~~RL~~l~fk~~F~~~L~-~S~~L~~lL~~IL~iGN~LN~gt~rG~A~GFkL~SL~KL~dtKs~-d~k 1031 (1184)
|+. .++.+..-.-.-.+++...+|...+. .....+.+|.-++.++.|-+ ...++.++... ...
T Consensus 116 ~i~~~il~~~~~~f~~~i~~~Qg~~~~l~~~~~~~r~~~ld~~~~~~~~~~--------------~~~~~~~~~~~~~~e 181 (895)
T PRK01156 116 YIEKNILGISKDVFLNSIFVGQGEMDSLISGDPAQRKKILDEILEINSLER--------------NYDKLKDVIDMLRAE 181 (895)
T ss_pred HHHHHHcCCCHHHhceeEEEeccchHHHHhCCHHHHHHHHHHHhChHHHHH--------------HHHHHHHHHHHHHHH
Q ss_pred chHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 001026 1032 MTLMHYLCK------IQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYA---EGEVRSLALLYSSV 1102 (1184)
Q Consensus 1032 ~TLLhflvk------i~L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a---~~~l~~L~~~~~~~ 1102 (1184)
..-+.++.. -.+..+..++..+...+..+..++............-.+.+...++.. +.++..++..+.++
T Consensus 182 i~~le~~~~~l~~~e~eL~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~~~l~~l~~~~~~~~~~e~~i~el 261 (895)
T PRK01156 182 ISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTA 261 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhCC-------------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001026 1103 GRNADALAQYFGE-------------------DPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEKAVENEKL 1163 (1184)
Q Consensus 1103 ~~~~~~l~~yFGE-------------------d~~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~ekkk~ekeaekek~ 1163 (1184)
++...++-.-+.+ +.......++-..+.+.-..+....++..+..+..++..+.++..++.
T Consensus 262 e~~l~el~~~~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~e~~~~~~e~~~~~~~e~ 341 (895)
T PRK01156 262 ESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDY 341 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhccchhhhcC
Q 001026 1164 KTQKGQSEHLVQN 1176 (1184)
Q Consensus 1164 k~~~~e~~~~~q~ 1176 (1184)
+....+-+.....
T Consensus 342 ~~~~~~~~~l~~~ 354 (895)
T PRK01156 342 IKKKSRYDDLNNQ 354 (895)
T ss_pred HHHHHHHHHHHHH
No 495
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=32.73 E-value=5.5e+02 Score=30.75 Aligned_cols=145 Identities=10% Similarity=0.065 Sum_probs=0.0
Q ss_pred hHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHH
Q 001026 1033 TLMHYLCK-----------------IQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSL 1095 (1184)
Q Consensus 1033 TLLhflvk-----------------i~L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L 1095 (1184)
+|++||+- -.|+++..-...|...+..+...-....+.....-.-++.+...+-.++.+++.+
T Consensus 33 SLIQ~LIIlgLVLFmVYGn~h~~te~~lq~~e~ra~~L~~q~~~L~~~~~NLtkeLN~t~~~K~~imq~ll~~rrdl~ri 112 (442)
T PF06637_consen 33 SLIQFLIILGLVLFMVYGNVHVSTESRLQATEQRADRLYSQVVGLRASQANLTKELNLTTRAKDAIMQMLLNARRDLDRI 112 (442)
T ss_pred HHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhchhHHHHHHHHHHHHHhhhhhhHH
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhc
Q 001026 1096 ALLYSSVGRNADALAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEKAVENEKLKTQKGQSEHLVQ 1175 (1184)
Q Consensus 1096 ~~~~~~~~~~~~~l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~ekkk~ekeaekek~k~~~~e~~~~~q 1175 (1184)
...+.++. .+.+.|-+.......+-.--..-.+=++...+.+........+..|+.+.|..++|.--.+.+++-.+.
T Consensus 113 nasfrQcq---~d~i~y~n~~Ry~aAIi~sekqc~eqLke~Nksc~al~~~L~~k~Ktle~E~~kek~vctkdKE~ll~~ 189 (442)
T PF06637_consen 113 NASFRQCQ---ADRIQYTNNQRYMAAIILSEKQCQEQLKEINKSCNALLLMLNQKAKTLEVELAKEKAVCTKDKEGLLLS 189 (442)
T ss_pred HHHHHHhh---hhHHHHHHHHHHHHHHHHhHhhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q ss_pred CcCcc
Q 001026 1176 NPLKS 1180 (1184)
Q Consensus 1176 ~~~~~ 1180 (1184)
+.+.+
T Consensus 190 kr~~e 194 (442)
T PF06637_consen 190 KRQVE 194 (442)
T ss_pred hhhHH
No 496
>PRK14858 tatA twin arginine translocase protein A; Provisional
Probab=32.68 E-value=1.8e+02 Score=28.84 Aligned_cols=59 Identities=20% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch
Q 001026 1109 LAQYFGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEKAVENEKLKTQKGQSE 1171 (1184)
Q Consensus 1109 l~~yFGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~ekkk~ekeaekek~k~~~~e~~ 1171 (1184)
.+..||-+ .+-++...+-.+++.|+++..+..+..+.+.+..+.+..+.+.+....+..
T Consensus 16 allvfGPk----KLPelar~lGk~i~~fk~~~~d~k~~i~~E~~~~e~~~~~~~~~~~~~~~~ 74 (108)
T PRK14858 16 ALIVIGPQ----KLPDLARSLGRGLAEFKKATDDFKQSMQEESRTAEEKEKAEKLAETKKEAE 74 (108)
T ss_pred HHHhcCch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHhhcc
No 497
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=32.66 E-value=8.1e+02 Score=28.47 Aligned_cols=134 Identities=10% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-C
Q 001026 1041 IQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPA-R 1119 (1184)
Q Consensus 1041 i~L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~-~ 1119 (1184)
++-..+..++......+..++.++........ ..-+..++..+...+..++.+++.++.....|..... +
T Consensus 74 ld~~~~~~~l~~~~a~l~~~~~~l~~~~~~~~---------~~~i~~~~~~l~~ak~~l~~a~~~~~r~~~L~~~g~vs~ 144 (331)
T PRK03598 74 LDAAPYENALMQAKANVSVAQAQLDLMLAGYR---------DEEIAQARAAVKQAQAAYDYAQNFYNRQQGLWKSRTISA 144 (331)
T ss_pred EChHHHHHHHHHHHHHHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhccchhhhcCcCccCCC
Q 001026 1120 CPFEQVVSTLLNFVKMFVLAHEENCRQ------LEFERKKAEKAVENEKLKTQKGQSEHLVQNPLKSSTI 1183 (1184)
Q Consensus 1120 ~~~e~ff~~l~~F~~~fk~a~ee~~k~------~e~ekkk~ekeaekek~k~~~~e~~~~~q~~~~~~~~ 1183 (1184)
...++-...+..-...++.+..+.... .+.+..+.+.++.+...+..+..-+...-+.-..|.|
T Consensus 145 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~a~~~l~~~~I~AP~dG~V 214 (331)
T PRK03598 145 NDLENARSSRDQAQATLKSAQDKLSQYREGNRPQDIAQAKASLAQAQAALAQAELNLQDTELIAPSDGTI 214 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCeEE
No 498
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=32.62 E-value=1.8e+02 Score=38.11 Aligned_cols=209 Identities=13% Similarity=0.176 Sum_probs=0.0
Q ss_pred hhhhhhhhhhccchHHH----HHcchhHHHHHHHHHHHhhhhcCCCCCcc--------eeeeeccchhchhcccccCCcc
Q 001026 965 VESKLRVFSFKIQFQTQ----VRNSIKLKRIMQTILSLGNALNHGTARGS--------AVGFRLDSLLKLTDTRARNNKM 1032 (1184)
Q Consensus 965 l~~RL~~l~fk~~F~~~----L~~S~~L~~lL~~IL~iGN~LN~gt~rG~--------A~GFkL~SL~KL~dtKs~d~k~ 1032 (1184)
+..+-++-.|..+|... +.+..+|..++...-.|-+-+........ ..++......+|..++....+.
T Consensus 529 LsgkadLE~fieE~s~tLdwIls~~~SLqDv~s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~L 608 (769)
T PF05911_consen 529 LSGKADLERFIEEFSLTLDWILSNCFSLQDVSSMRSEIKKNFDGDSSSEAEINSEDEADTSEKKELEEELEKLESEKEEL 608 (769)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001026 1033 TLMHYLCKIQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQY 1112 (1184)
Q Consensus 1033 TLLhflvki~L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~y 1112 (1184)
..-..-|.-+++.+..+|++....|..++.+|....+.....+.=.+.|+.-++..+.++..++.....+...+..|-.=
T Consensus 609 e~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~E 688 (769)
T PF05911_consen 609 EMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEE 688 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q ss_pred hCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhcCcC
Q 001026 1113 FGEDPARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEKAVENEKLKTQKGQSEHLVQNPL 1178 (1184)
Q Consensus 1113 FGEd~~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~ekkk~ekeaekek~k~~~~e~~~~~q~~~ 1178 (1184)
+-+. +...+++.....++-.++.+...+..-.... .....-++++.-...+++-++=|+++
T Consensus 689 le~e--r~~~~e~~~kc~~Le~el~r~~~~~~~~~~~---~~~~k~kqe~EiaaAA~KLAECQeTI 749 (769)
T PF05911_consen 689 LEKE--RALSEELEAKCRELEEELERMKKEESLQQLA---NEDKKIKQEKEIAAAAEKLAECQETI 749 (769)
T ss_pred HHHH--HhcchhhhhHHHHHHHHHHhhhcccchhhcc---ccccccchHHHHHHHHHHHHHHHHHH
No 499
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=32.59 E-value=7.7e+02 Score=27.83 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc-----CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 001026 1043 LKFLAEEMQAISKGLEKVVQELTASEN-----DGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDP 1117 (1184)
Q Consensus 1043 L~~L~~El~~l~k~L~kv~~el~~s~~-----d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~ 1117 (1184)
|..+..++..+....+.+..+++..-. . ..-...++.-+...+.++..|+...+++++..++...
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~----~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~------ 91 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILESDSNGQ----LLEIQQLKREIEELRERLERLRERIERLRKRIEQKRE------ 91 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhcCcC
Q 001026 1118 ARCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEKAVENEKLKTQKGQSEHLVQNPL 1178 (1184)
Q Consensus 1118 ~~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~ekkk~ekeaekek~k~~~~e~~~~~q~~~ 1178 (1184)
..++.-..+..-...+.+..+...+..+...+......+.+..-.+....-..+|..+
T Consensus 92 ---~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l 149 (302)
T PF10186_consen 92 ---RLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQL 149 (302)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=32.56 E-value=9.6e+02 Score=28.90 Aligned_cols=128 Identities=13% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q 001026 1039 CKIQLKFLAEEMQAISKGLEKVVQELTASENDGEVSGNFCKLLKEFLSYAEGEVRSLALLYSSVGRNADALAQYFGEDPA 1118 (1184)
Q Consensus 1039 vki~L~~L~~El~~l~k~L~kv~~el~~s~~d~~~~d~f~~~m~~Fl~~a~~~l~~L~~~~~~~~~~~~~l~~yFGEd~~ 1118 (1184)
+++.-+....|++....+-+.++.++.....+..........+.+-..+...+|..|...+.+++.....|..
T Consensus 100 ~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a------- 172 (499)
T COG4372 100 AETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQA------- 172 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhc
Q 001026 1119 RCPFEQVVSTLLNFVKMFVLAHEENCRQLEFERKKAEKAVENEKLKTQKGQSEHLVQ 1175 (1184)
Q Consensus 1119 ~~~~e~ff~~l~~F~~~fk~a~ee~~k~~e~ekkk~ekeaekek~k~~~~e~~~~~q 1175 (1184)
+-.++-+.....-....+...+..+.+.+++.-+.+...-+.+.+.....++.+|
T Consensus 173 --~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Q 227 (499)
T COG4372 173 --SQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQ 227 (499)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!