BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001027
(1184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 129/569 (22%), Positives = 219/569 (38%), Gaps = 121/569 (21%)
Query: 444 SRFQCRALNIN--EDLGQIKYVFSDKTGTLTENKMEFRCASIWGIDYSGGNARSHSEEVG 501
+R C N+ E LG + SDKTGTLT+N+M A +W
Sbjct: 357 ARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTV--AHMW----------------- 397
Query: 502 YSVQVDGKVLRPKLTVNVDPHLLQLSRSGKNTEEGKHVYDFFLALAA-CNTIVPLVVDTS 560
D ++ T N +SG ++ + +AA CN V +
Sbjct: 398 ----FDNQIHEADTTEN---------QSGAAFDKTSATWSALSRIAALCNRAVFQAGQDN 444
Query: 561 DPNVKLVDYQGESPDEQALVYAAAAYGFMLIERTSGHIVIDIQGQRQRFNVLGLHEFD-- 618
P +K G++ + L G + R +++I L +HE +
Sbjct: 445 VPILKR-SVAGDASESALLKCIELCCGSVQGMRDRNPKIVEIPFNSTNKYQLSIHENEKS 503
Query: 619 SDRKRMSVILGLP----DKTVTLFVKGADTSMFSVIAKALNMNVIRGTESHLHAYSSLG- 673
S+ + + V+ G P D+ T+ + GA+ + + +A +AY LG
Sbjct: 504 SESRYLLVMKGAPERILDRCSTILLNGAEEPLKEDMKEAFQ-----------NAYLELGG 552
Query: 674 LRTLVVGMRELSASEFEQWQSSFEAASNALFGRAALLRKVASSVENNLCILGASGIEDKL 733
L V+G + E +++ + ++ + +LC +G + D
Sbjct: 553 LGERVLGFCHFALPE-DKYNEGYPFDADE-----------PNFPTTDLCFVGLMAMIDPP 600
Query: 734 QQGVPEAIESLRAAGIKVWVLTGDKQETAISIGYSSKLLTSKMTQVIINSNSKESCRKSL 793
+ VP+A+ R+AGIKV ++TGD TA +I +K +I N +++
Sbjct: 601 RAAVPDAVGKCRSAGIKVIMVTGDHPITAKAI--------AKGVGIISEGN------ETI 646
Query: 794 EDAIAMSKKLKTVPGVSHNSERSSGAGVAQLALIIDGTSLVYILDSELDEQLFQLAGTCS 853
ED ++ +L +P N + A ++ G+ L + LD+ L +
Sbjct: 647 ED---IAARLN-IPIGQVNPRDAK-------ACVVHGSDLKDLSTEVLDDILHYH----T 691
Query: 854 VVLCCRVAPLQKAGIVALVKTRTSDMTLAIGDGANDVSMIQMADVGV--GISGQEGRQAV 911
++ R +P QK IV + R + GDG ND ++ AD+GV GISG + +
Sbjct: 692 EIVFARTSPQQKLIIVEGCQ-RQGAIVAVTGDGVNDSPALKKADIGVAMGISGSDVSKQA 750
Query: 912 MSSDFAMGQFRFLVTLLLVHGHWNYQRMGYMILYNFYRNAXXXXXXXXXXXXTAFTLTTA 971
F +VT + G +I N ++ A+TLT+
Sbjct: 751 ADMILLDDNFASIVTGV---------EEGRLIFDNLKKS-------------IAYTLTSN 788
Query: 972 INEWSSVLYSVI-YTSLPTIVVAILDKDL 999
I E + L +I LP V IL DL
Sbjct: 789 IPEITPFLVFIIGNVPLPLGTVTILCIDL 817
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 122/284 (42%), Gaps = 55/284 (19%)
Query: 719 NNLCILGASGIEDKLQQGVPEAIESLRAAGIKVWVLTGDKQETAISIGYSSKLLTSKMTQ 778
+NLC +G + D + VP+A+ R+AGIKV ++TGD TA +I +K
Sbjct: 550 DNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAI--------AKGVG 601
Query: 779 VIINSNSKESCRKSLEDAIAMSKKLKTVPGVSHNSERSSGAGVAQLALIIDGTSLVYILD 838
+I N +++ED ++ +L +P VS + R + A V + + D TS
Sbjct: 602 IISEGN------ETVED---IAARLN-IP-VSQVNPRDAKACVVHGSDLKDMTS------ 644
Query: 839 SELDEQLFQLAGTCSVVLCCRVAPLQKAGIVALVKTRTSDMTLAIGDGANDVSMIQMADV 898
EQL + + ++ R +P QK IV + R + GDG ND + AD+
Sbjct: 645 ----EQLDDILKYHTEIVFARTSPQQKLIIVEGCQ-RQGAIVAVTGDGVNDSPASKKADI 699
Query: 899 GV--GISGQEGRQAVMSSDFAMGQFRFLVTLLLVHGHWNYQRMGYMILYNFYRNAXXXXX 956
GV GI+G + + F +VT + G +I N ++
Sbjct: 700 GVAMGIAGSDVSKQAADMILLDDNFASIVTGV---------EEGRLIFDNLKKS------ 744
Query: 957 XXXXXXXTAFTLTTAINEWSSVLYSVIYT-SLPTIVVAILDKDL 999
A+TLT+ I E + L +I LP V IL DL
Sbjct: 745 -------IAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDL 781
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 147 LPLAFVLS-VTAIKDAYEDYRRHRSDRIENN------RLANVLVNNQFQEKKWKDIRVGE 199
L L VLS V I + Y+ +S +I + + A V+ N + +++ VG+
Sbjct: 99 LYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGD 158
Query: 200 IIKIKTNETIPCDMVLLSTSDPTGVAYLQTINLDGESNLKTR 241
++++K + IP D+ ++S + + +L GES +TR
Sbjct: 159 LVEVKGGDRIPADLRIISANG----CKVDNSSLTGESEPQTR 196
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 122/284 (42%), Gaps = 55/284 (19%)
Query: 719 NNLCILGASGIEDKLQQGVPEAIESLRAAGIKVWVLTGDKQETAISIGYSSKLLTSKMTQ 778
+NLC +G + D + VP+A+ R+AGIKV ++TGD TA +I +K
Sbjct: 556 DNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAI--------AKGVG 607
Query: 779 VIINSNSKESCRKSLEDAIAMSKKLKTVPGVSHNSERSSGAGVAQLALIIDGTSLVYILD 838
+I N +++ED ++ +L +P VS + R + A V + + D TS
Sbjct: 608 IISEGN------ETVED---IAARLN-IP-VSQVNPRDAKACVVHGSDLKDMTS------ 650
Query: 839 SELDEQLFQLAGTCSVVLCCRVAPLQKAGIVALVKTRTSDMTLAIGDGANDVSMIQMADV 898
EQL + + ++ R +P QK IV + R + GDG ND + AD+
Sbjct: 651 ----EQLDDILKYHTEIVFARTSPQQKLIIVEGCQ-RQGAIVAVTGDGVNDSPASKKADI 705
Query: 899 GV--GISGQEGRQAVMSSDFAMGQFRFLVTLLLVHGHWNYQRMGYMILYNFYRNAXXXXX 956
GV GI+G + + F +VT + G +I N ++
Sbjct: 706 GVAMGIAGSDVSKQAADMILLDDNFASIVTGV---------EEGRLIFDNLKKS------ 750
Query: 957 XXXXXXXTAFTLTTAINEWSSVLYSVIYT-SLPTIVVAILDKDL 999
A+TLT+ I E + L +I LP V IL DL
Sbjct: 751 -------IAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDL 787
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 444 SRFQCRALNIN--EDLGQIKYVFSDKTGTLTENKMEFRCASIW 484
+R C N+ E LG + SDKTGTLT+N+M A +W
Sbjct: 327 ARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTV--AHMW 367
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Query: 147 LPLAFVLS-VTAIKDAYEDYRRHRSDRIENN------RLANVLVNNQFQEKKWKDIRVGE 199
L L VLS V I + Y+ +S +I + + A V+ N + +++ VG+
Sbjct: 105 LYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGD 164
Query: 200 IIKIKTNETIPCDMVLLSTSDPTGVAYLQTINLDGESNLKTR 241
++++K + IP D+ ++S + + +L GES +TR
Sbjct: 165 LVEVKGGDRIPADLRIISANG----CKVDNSSLTGESEPQTR 202
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 142/616 (23%), Positives = 227/616 (36%), Gaps = 137/616 (22%)
Query: 397 ILFTFLMSVIVFQVMIPISLYISMELVRLGQAYFMIQDSHMYDEASSSRFQCRALNINED 456
I +TFL +++ F M + Y+ L+ A + S +S + L E
Sbjct: 323 IGYTFLRAMVFF--MAIVVAYVPEGLL----ATVTVCLSLTAKRLASKNCVVKNLEAVET 376
Query: 457 LGQIKYVFSDKTGTLTENKMEFRCASIWGIDYSGGNARSHSEEVGYSVQVDGKVLRPKLT 516
LG + SDKTGTLT+N+M + +W D +A + ++ G + + R
Sbjct: 377 LGSTSVICSDKTGTLTQNRMTV--SHLW-FDNHIHSADTTEDQSGQTFDQSSETWRALCR 433
Query: 517 VNVDPHLLQLSRSGKNTEEGKHVYDFFLALAACNTIVPLVVDTSDPNVKLVDYQGESPDE 576
V L CN Q P
Sbjct: 434 V----------------------------LTLCN------------RAAFKSGQDAVPVP 453
Query: 577 QALVYAAAAYGFMLIERTSGHIVIDIQGQRQRFNVLGLHEFDSDRKRMSVILGLPDKT-- 634
+ +V A+ +L + S + + G R+RF + F+S K I L D
Sbjct: 454 KRIVIGDASETALL--KFSELTLGNAMGYRERFPKVCEIPFNSTNKFQLSIHTLEDPRDP 511
Query: 635 -VTLFVKGADTSMFSVIAKALNMNVIRGTESHLH---------AYSSLG-LRTLVVGMRE 683
L +KGA + + L I+G E L AY SLG L V+G +
Sbjct: 512 RHVLVMKGAPERVLERCSSIL----IKGQELPLDEQWREAFQTAYLSLGGLGERVLGFCQ 567
Query: 684 LSASEFEQWQSSFEAASNALFGRAALLRKVASSVENNLCILGASGIEDKLQQGVPEAIES 743
L SE + + + A+ + + L G + D + VP+A+
Sbjct: 568 LYLSE-KDYPPGYAFDVEAM-----------NFPTSGLSFAGLVSMIDPPRATVPDAVLK 615
Query: 744 LRAAGIKVWVLTGDKQETAISIGYSSKLLTSKMTQVIINSNSKESCRKSLEDAIAMSKKL 803
R AGI+V ++TGD TA +I S +++ +++ED ++ +L
Sbjct: 616 CRTAGIRVIMVTGDHPITAKAIAASVGIISEG--------------SETVED---IAARL 658
Query: 804 KT-VPGVSHNSERSSGAGVAQLALIIDGTSLVYILDSELDEQLFQLAGTCSVVLCCRVAP 862
+ V V+ R A +I+G L + SEL E L T ++ R +P
Sbjct: 659 RVPVDQVNRKDAR---------ACVINGMQLKDMDPSELVEAL----RTHPEMVFARTSP 705
Query: 863 LQKAGIVALVKTRTSDMTLAIGDGANDVSMIQMADVGV--GISGQEGRQAVMSSDFAMGQ 920
QK IV + R + GDG ND ++ AD+GV GI+G + +
Sbjct: 706 QQKLVIVESCQ-RLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDN 764
Query: 921 FRFLVTLLLVHGHWNYQRMGYMILYNFYRNAXXXXXXXXXXXXTAFTLTTAINEWSSVL- 979
F +VT + G +I N ++ A+TLT I E + L
Sbjct: 765 FASIVTGV---------EQGRLIFDNLKKS-------------IAYTLTKNIPELTPYLI 802
Query: 980 YSVIYTSLPTIVVAIL 995
Y + LP + IL
Sbjct: 803 YITVSVPLPLGCITIL 818
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 144/345 (41%), Gaps = 71/345 (20%)
Query: 449 RALNINEDLGQIKYVFSDKTGTLTENKMEFRCASIWGIDYSGGNARSHSE--EVGYSVQV 506
R+L E LG + SDKTGTLT N+M ++ ID G+ S +E G +
Sbjct: 335 RSLPSVETLGCTSVICSDKTGTLTTNQMSV--CKMFIIDKVDGDFCSLNEFSITGSTYAP 392
Query: 507 DGKVLRPKLTVNVDPHLLQLSRSGKNTEEGKHVYDFFLALAACNTIVPLVVDTS-DPNVK 565
+G+VL+ N P RSG+ +D + LA TI L D+S D N
Sbjct: 393 EGEVLK-----NDKP-----IRSGQ--------FDGLVELA---TICALCNDSSLDFNET 431
Query: 566 LVDYQ--GESPD-------EQALVYAAAAYGFMLIERTSGHIVIDIQGQRQRFNVLGLHE 616
Y+ GE+ + E+ V+ +ER + + Q ++ F + E
Sbjct: 432 KGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFTL----E 487
Query: 617 FDSDRKRMSVILGLPDKTV------TLFVKGADTSMFSVIAKALNMNVIRGTESHLHAYS 670
F DRK MSV P K+ +FVKGA + N +R + +
Sbjct: 488 FSRDRKSMSVYCS-PAKSSRAAVGNKMFVKGAPEGVID------RCNYVRVGTTRVPMTG 540
Query: 671 SLGLRTLVVGMRELSASEFEQWQSSFE-------AASNALFGRAALLRKVAS---SVENN 720
+ + L V ++W + + A + R ++ +S E +
Sbjct: 541 PVKEKILSV---------IKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETD 591
Query: 721 LCILGASGIEDKLQQGVPEAIESLRAAGIKVWVLTGDKQETAISI 765
L +G G+ D ++ V +I+ R AGI+V ++TGD + TAI+I
Sbjct: 592 LTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 636
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 90/345 (26%), Positives = 144/345 (41%), Gaps = 71/345 (20%)
Query: 449 RALNINEDLGQIKYVFSDKTGTLTENKMEFRCASIWGIDYSGGNARSHSE--EVGYSVQV 506
R+L E LG + SDKTGTLT N+M ++ ID G+ S +E G +
Sbjct: 334 RSLPSVETLGCTSVICSDKTGTLTTNQMSV--CKMFIIDKVDGDFCSLNEFSITGSTYAP 391
Query: 507 DGKVLRPKLTVNVDPHLLQLSRSGKNTEEGKHVYDFFLALAACNTIVPLVVDTS-DPNVK 565
+G+VL+ N P RSG+ +D + LA TI L D+S D N
Sbjct: 392 EGEVLK-----NDKP-----IRSGQ--------FDGLVELA---TICALCNDSSLDFNET 430
Query: 566 LVDYQ--GESPD-------EQALVYAAAAYGFMLIERTSGHIVIDIQGQRQRFNVLGLHE 616
Y+ GE+ + E+ V+ +ER + + Q ++ F + E
Sbjct: 431 KGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFTL----E 486
Query: 617 FDSDRKRMSVILGLPDKTV------TLFVKGADTSMFSVIAKALNMNVIRGTESHLHAYS 670
F DRK MSV P K+ +FVKGA + N +R + +
Sbjct: 487 FSRDRKSMSVYCS-PAKSSRAAVGNKMFVKGAPEGVID------RCNYVRVGTTRVPMTG 539
Query: 671 SLGLRTLVVGMRELSASEFEQWQSSFE-------AASNALFGRAALLRKVAS---SVENN 720
+ + L V ++W + + A + R ++ +S E +
Sbjct: 540 PVKEKILSV---------IKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETD 590
Query: 721 LCILGASGIEDKLQQGVPEAIESLRAAGIKVWVLTGDKQETAISI 765
L +G G+ D ++ V +I+ R AGI+V ++TGD + TAI+I
Sbjct: 591 LTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 635
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 143/344 (41%), Gaps = 70/344 (20%)
Query: 449 RALNINEDLGQIKYVFSDKTGTLTENKMEFRCASIWGIDYSGGNARSHSE--EVGYSVQV 506
R+L E LG + SDKTGTLT N+M ++ ID G+ +E G +
Sbjct: 334 RSLPSVETLGCTSVICSDKTGTLTTNQMSV--CKMFIIDRIDGDLCLLNEFSVTGSTYAP 391
Query: 507 DGKVLRPKLTVNVDPHLLQLSRSGKNTEEGKHVYDFFLALAACNTIVPLVVDTS-DPNVK 565
+G+VL+ N P RSG+ YD + LA TI L D+S D N
Sbjct: 392 EGEVLK-----NDKP-----VRSGQ--------YDGLVELA---TICALCNDSSLDFNET 430
Query: 566 LVDYQ--GESPD-------EQALVYAAAAYGFMLIERTSGHIVIDIQGQRQRFNVLGLHE 616
Y+ GE+ + E+ V+ +ER + + Q ++ F + E
Sbjct: 431 KGIYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFTL----E 486
Query: 617 FDSDRKRMSVILGLPDKTVT-----LFVKGADTSMFSVIAKALNMNVIRGTESHLHAYSS 671
F DRK MSV P K+ +FVKGA + N +R + +
Sbjct: 487 FSRDRKSMSVYCS-PAKSRAAVGNKMFVKGAPEGVID------RCNYVRVGTTRVPMTGP 539
Query: 672 LGLRTLVVGMRELSASEFEQWQSSFE-------AASNALFGRAALLRKVASSV---ENNL 721
+ + L V ++W + + A + R ++ ++ E +L
Sbjct: 540 VKEKILSV---------IKEWGTGRDTLRCLALATRDTPPKREEMVLDDSTKFMEYETDL 590
Query: 722 CILGASGIEDKLQQGVPEAIESLRAAGIKVWVLTGDKQETAISI 765
+G G+ D ++ V +I+ R AGI+V ++TGD + TAI+I
Sbjct: 591 TFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 634
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 857 CC--RVAPLQKAGIVALVKTRTSDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMSS 914
CC RV P K+ IV +++ ++T GDG ND ++ A++G+ + G A +S
Sbjct: 673 CCFARVEPTHKSKIVEYLQS-FDEITAMTGDGVNDAPALKKAEIGIAM-GSGTAVAKTAS 730
Query: 915 DFAMGQFRFLVTLLLV-HGHWNYQRMGYMILYNFYRN 950
+ + F + V G Y M I Y N
Sbjct: 731 EMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSN 767
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 143/345 (41%), Gaps = 71/345 (20%)
Query: 449 RALNINEDLGQIKYVFSDKTGTLTENKMEFRCASIWGIDYSGGNARSHSE--EVGYSVQV 506
R+L E LG + S KTGTLT N+M ++ ID G+ S +E G +
Sbjct: 334 RSLPSVETLGCTSVICSXKTGTLTTNQMSV--CKMFIIDKVDGDFCSLNEFSITGSTYAP 391
Query: 507 DGKVLRPKLTVNVDPHLLQLSRSGKNTEEGKHVYDFFLALAACNTIVPLVVDTS-DPNVK 565
+G+VL+ N P RSG+ +D + LA TI L D+S D N
Sbjct: 392 EGEVLK-----NDKP-----IRSGQ--------FDGLVELA---TICALCNDSSLDFNET 430
Query: 566 LVDYQ--GESPD-------EQALVYAAAAYGFMLIERTSGHIVIDIQGQRQRFNVLGLHE 616
Y+ GE+ + E+ V+ +ER + + Q ++ F + E
Sbjct: 431 KGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFTL----E 486
Query: 617 FDSDRKRMSVILGLPDKTV------TLFVKGADTSMFSVIAKALNMNVIRGTESHLHAYS 670
F DRK MSV P K+ +FVKGA + N +R + +
Sbjct: 487 FSRDRKSMSVYCS-PAKSSRAAVGNKMFVKGAPEGVID------RCNYVRVGTTRVPMTG 539
Query: 671 SLGLRTLVVGMRELSASEFEQWQSSFE-------AASNALFGRAALLRKVAS---SVENN 720
+ + L V ++W + + A + R ++ +S E +
Sbjct: 540 PVKEKILSV---------IKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETD 590
Query: 721 LCILGASGIEDKLQQGVPEAIESLRAAGIKVWVLTGDKQETAISI 765
L +G G+ D ++ V +I+ R AGI+V ++TGD + TAI+I
Sbjct: 591 LTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAI 635
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 30/200 (15%)
Query: 728 GIEDKLQQGVPEAIESLRAAGIKV-WVLTGDK---QETAISIGYSSKLLTSKM-----TQ 778
+E ++ G PE +E + G+ +L G+K ++ +++ +L K+ T
Sbjct: 66 ALEHGIELGEPEKVEVIAGEGVVADGILVGNKRLXEDFGVAVSNEVELALEKLEREAKTA 125
Query: 779 VIINSNSKESCRKSLEDAIAMSKKLKTVPGVSHNSERSSGAGVAQLALIIDGTSLVYILD 838
VI+ N + +E IA+S LK + + G V + D +
Sbjct: 126 VIVARNGR------VEGIIAVSDTLKESAKPAVQELKRXGIKVGXITG--DNWRSAEAIS 177
Query: 839 SELDEQLFQLAGTCSVVLCCRVAPLQKAGIVALVKTRTSDMTLAIGDGANDVSMIQMADV 898
EL+ L + V P QK+ V K + ++ +GDG ND + AD+
Sbjct: 178 RELNLDL----------VIAEVLPHQKSEEVK--KLQAKEVVAFVGDGINDAPALAQADL 225
Query: 899 GVGISGQEGRQAVMSSDFAM 918
G+ + G AV S D +
Sbjct: 226 GIAV-GSGSDVAVESGDIVL 244
Score = 33.1 bits (74), Expect = 0.88, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 712 KVASSVENNLCILGASGIEDKLQQGVPEAIESLRAAGIKVWVLTGDKQETAISIGYSSKL 771
K A V N + G + D L++ A++ L+ GIKV +TGD +A +I S +L
Sbjct: 123 KTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAI--SREL 180
Query: 772 -LTSKMTQVIINSNSKESCRKSLEDAIA 798
L + +V+ + S+E + ++ +A
Sbjct: 181 NLDLVIAEVLPHQKSEEVKKLQAKEVVA 208
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 34.3 bits (77), Expect = 0.42, Method: Composition-based stats.
Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 30/200 (15%)
Query: 728 GIEDKLQQGVPEAIESLRAAGIKV-WVLTGDK---QETAISIGYSSKLLTSKM-----TQ 778
+E ++ G PE +E + G+ +L G+K ++ +++ +L K+ T
Sbjct: 86 ALEHGIELGEPEKVEVIAGEGVVADGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTA 145
Query: 779 VIINSNSKESCRKSLEDAIAMSKKLKTVPGVSHNSERSSGAGVAQLALIIDGTSLVYILD 838
VI+ N + +E IA+S LK + + G V + D +
Sbjct: 146 VIVARNGR------VEGIIAVSDTLKESAKPAVQELKRMGIKVGMITG--DNWRSAEAIS 197
Query: 839 SELDEQLFQLAGTCSVVLCCRVAPLQKAGIVALVKTRTSDMTLAIGDGANDVSMIQMADV 898
EL+ L + V P QK+ V K + ++ +GDG ND + AD+
Sbjct: 198 RELNLDL----------VIAEVLPHQKSEEVK--KLQAKEVVAFVGDGINDAPALAQADL 245
Query: 899 GVGISGQEGRQAVMSSDFAM 918
G+ + G AV S D +
Sbjct: 246 GIAV-GSGSDVAVESGDIVL 264
Score = 33.5 bits (75), Expect = 0.73, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 712 KVASSVENNLCILGASGIEDKLQQGVPEAIESLRAAGIKVWVLTGDKQETAISIGYSSKL 771
K A V N + G + D L++ A++ L+ GIKV ++TGD +A +I S +L
Sbjct: 143 KTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAI--SREL 200
Query: 772 -LTSKMTQVIINSNSKESCRKSLEDAIA 798
L + +V+ + S+E + ++ +A
Sbjct: 201 NLDLVIAEVLPHQKSEEVKKLQAKEVVA 228
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 34.3 bits (77), Expect = 0.45, Method: Composition-based stats.
Identities = 46/200 (23%), Positives = 81/200 (40%), Gaps = 30/200 (15%)
Query: 728 GIEDKLQQGVPEAIESLRAAGIKV-WVLTGDK---QETAISIGYSSKLLTSKM-----TQ 778
+E ++ G PE +E + G+ +L G+K ++ +++ +L K+ T
Sbjct: 86 ALEHGIELGEPEKVEVIAGEGVVADGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTA 145
Query: 779 VIINSNSKESCRKSLEDAIAMSKKLKTVPGVSHNSERSSGAGVAQLALIIDGTSLVYILD 838
VI+ N + +E IA+S LK + + G V + D +
Sbjct: 146 VIVARNGR------VEGIIAVSDTLKESAKPAVQELKRMGIKVGMITG--DNWRSAEAIS 197
Query: 839 SELDEQLFQLAGTCSVVLCCRVAPLQKAGIVALVKTRTSDMTLAIGDGANDVSMIQMADV 898
EL+ L + V P QK+ V K + ++ +GDG ND + AD+
Sbjct: 198 RELNLDL----------VIAEVLPHQKSEEVK--KLQAKEVVAFVGDGINDAPALAQADL 245
Query: 899 GVGISGQEGRQAVMSSDFAM 918
G+ + G AV S D +
Sbjct: 246 GIAV-GSGSDVAVESGDIVL 264
Score = 33.5 bits (75), Expect = 0.77, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 712 KVASSVENNLCILGASGIEDKLQQGVPEAIESLRAAGIKVWVLTGDKQETAISIGYSSKL 771
K A V N + G + D L++ A++ L+ GIKV ++TGD +A +I S +L
Sbjct: 143 KTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAI--SREL 200
Query: 772 -LTSKMTQVIINSNSKESCRKSLEDAIA 798
L + +V+ + S+E + ++ +A
Sbjct: 201 NLDLVIAEVLPHQKSEEVKKLQAKEVVA 228
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 729 IEDKLQQGVPEAIESLRAAGIKVWVLTGDKQETAISI 765
+ED ++ PE I L+ +GI++ +LTGD + TA ++
Sbjct: 551 VEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAV 587
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 33.5 bits (75), Expect = 0.72, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 880 TLAIGDGANDVSMIQMADVGVGISGQEGRQAVMSSDF 916
T++ GDG ND+SM++ A +GV + GQ ++D+
Sbjct: 206 TMSFGDGGNDISMLRHAAIGVAM-GQAKEDVKAAADY 241
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 33.5 bits (75), Expect = 0.72, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 880 TLAIGDGANDVSMIQMADVGVGISGQEGRQAVMSSDF 916
T++ GDG ND+SM++ A +GV + GQ ++D+
Sbjct: 206 TMSFGDGGNDISMLRHAAIGVAM-GQAKEDVKAAADY 241
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 876 TSDMTLAIGDGANDVSMIQMADVGVGISGQE 906
T + +AIGDG ND+SMI+ A +GV + +
Sbjct: 212 TREEVIAIGDGYNDLSMIKFAGMGVAMGNAQ 242
>pdb|3DAM|A Chain A, Crystal Structure Of Allene Oxide Synthase
pdb|3DAN|A Chain A, Crystal Structure Of Allene Oxide Synthase
pdb|3DBM|A Chain A, Crystal Structure Of Allene Oxide Synthase
Length = 473
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 1104 AVPSLPGYWAFFEVAKT---RLFWFCLMIILVAALIPRFLVKF----LYQYYYPCDVQIA 1156
+ P+L W F +A T L WF +L +P FL+K LY Y+ +
Sbjct: 193 SAPTLISSWVLFNLAPTLDLGLPWFLQEPLLHTFRLPAFLIKSTYNKLYDYFQSVATPVM 252
Query: 1157 REAEKVGNLRERGAGEI 1173
+AEK+G ++ I
Sbjct: 253 EQAEKLGVPKDEAVHNI 269
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 399 FTFLMSVIVFQVMIPISLYISMELVRLGQAYFMIQDSHMYDEASSSRFQCRALNINEDLG 458
FT +++I V +P + +M + G AY + + + L+ E L
Sbjct: 325 FTLAITIIGVPVGLPAVVTTTMAV---GAAYL-----------AKKKAIVQKLSAIESLA 370
Query: 459 QIKYVFSDKTGTLTENKMEFRCA-SIWGID 487
++ + SDKTGTLT+NK+ ++ G+D
Sbjct: 371 GVEILCSDKTGTLTKNKLSLHDPYTVAGVD 400
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 712 KVASSVENNLCILGASGIEDKLQQGVPEAIESLRAAGIKVWVLTGDKQETAISIGYSSKL 771
K A V N + G + D L++ A++ L+ GIKV ++TGD +A +I S +L
Sbjct: 437 KTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAI--SREL 494
Query: 772 -LTSKMTQVIINSNSKESCRKSLEDAIA 798
L + +V+ + S+E + ++ +A
Sbjct: 495 NLDLVIAEVLPHQKSEEVKKLQAKEVVA 522
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 81/199 (40%), Gaps = 30/199 (15%)
Query: 729 IEDKLQQGVPEAIESLRAAGIKV-WVLTGDK---QETAISIGYSSKLLTSKM-----TQV 779
+E ++ G PE +E + G+ +L G+K ++ +++ +L K+ T V
Sbjct: 381 LEHGIELGEPEKVEVIAGEGVVADGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAV 440
Query: 780 IINSNSKESCRKSLEDAIAMSKKLKTVPGVSHNSERSSGAGVAQLALIIDGTSLVYILDS 839
I+ N + +E IA+S LK + + G V + D +
Sbjct: 441 IVARNGR------VEGIIAVSDTLKESAKPAVQELKRMGIKVGMITG--DNWRSAEAISR 492
Query: 840 ELDEQLFQLAGTCSVVLCCRVAPLQKAGIVALVKTRTSDMTLAIGDGANDVSMIQMADVG 899
EL+ L + V P QK+ V K + ++ +GDG ND + AD+G
Sbjct: 493 ELNLDL----------VIAEVLPHQKSEEVK--KLQAKEVVAFVGDGINDAPALAQADLG 540
Query: 900 VGISGQEGRQAVMSSDFAM 918
+ + G AV S D +
Sbjct: 541 IAV-GSGSDVAVESGDIVL 558
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 712 KVASSVENNLCILGASGIEDKLQQGVPEAIESLRAAGIKVWVLTGDKQETAISI 765
K A V N + G + D L++ A++ L+ GIKV ++TGD +A +I
Sbjct: 515 KTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAI 568
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 81/199 (40%), Gaps = 30/199 (15%)
Query: 729 IEDKLQQGVPEAIESLRAAGIKV-WVLTGDK---QETAISIGYSSKLLTSKM-----TQV 779
+E ++ G PE +E + G+ +L G+K ++ +++ +L K+ T V
Sbjct: 459 LEHGIELGEPEKVEVIAGEGVVADGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAV 518
Query: 780 IINSNSKESCRKSLEDAIAMSKKLKTVPGVSHNSERSSGAGVAQLALIIDGTSLVYILDS 839
I+ N + +E IA+S LK + + G V + D +
Sbjct: 519 IVARNGR------VEGIIAVSDTLKESAKPAVQELKRMGIKVGMITG--DNWRSAEAISR 570
Query: 840 ELDEQLFQLAGTCSVVLCCRVAPLQKAGIVALVKTRTSDMTLAIGDGANDVSMIQMADVG 899
EL+ L + V P QK+ V K + ++ +GDG ND + AD+G
Sbjct: 571 ELNLDL----------VIAEVLPHQKSEEVK--KLQAKEVVAFVGDGINDAPALAQADLG 618
Query: 900 VGISGQEGRQAVMSSDFAM 918
+ + G AV S D +
Sbjct: 619 IAV-GSGSDVAVESGDIVL 636
>pdb|2OA9|A Chain A, Restriction Endonuclease Mvai In The Absence Of Dna
pdb|2OA9|B Chain B, Restriction Endonuclease Mvai In The Absence Of Dna
pdb|2OAA|A Chain A, Restriction Endonuclease Mvai-Cognate Dna Substrate
Complex
pdb|2OAA|B Chain B, Restriction Endonuclease Mvai-Cognate Dna Substrate
Complex
Length = 249
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 201 IKIKTNETIPCDMVLLSTSDPTGVAYLQTINLDGESNLKTRYAKQETLLKVPEKETISGL 260
I+IKT+ET ++ L T PT T+ L+ RY K++ +T+SG
Sbjct: 57 IEIKTHETAAKSLLTLFTKSPTNPRGANTM-------LRNRYGKKDEYGNNILHQTVSG- 108
Query: 261 IKCEKPNRNIYGFHANMEVD 280
K N N Y + +++D
Sbjct: 109 --NRKTNSNSYNYDFKIDID 126
>pdb|3P96|A Chain A, Crystal Structure Of Phosphoserine Phosphatase Serb From
Mycobacterium Avium, Native Form
Length = 415
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 880 TLAIGDGANDVSMIQMADVGVGISGQEGRQAVMSSDFAMGQFRFLVTLLLVHG 932
T+A+GDGAND+ M+ A +G+ + + + V + + +L T+L + G
Sbjct: 342 TVAVGDGANDIDMLAAAGLGIAFNAKPALREVADASLS---HPYLDTVLFLLG 391
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 723 ILGASGIEDKLQQGVPEAIESLRAAGIKVWVLTGDKQETAISIGYSSKL-LTSKMTQVII 781
I +G KL++ A++ L+ GIKV +TGD +A +I S +L L + +V+
Sbjct: 13 IFDKTGTLTKLKESAKPAVQELKRXGIKVGXITGDNWRSAEAI--SRELNLDLVIAEVLP 70
Query: 782 NSNSKESCRKSLEDAIA 798
+ S+E + ++ +A
Sbjct: 71 HQKSEEVKKLQAKEVVA 87
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 858 CRVAPLQKAGIVALVKTRTSDMTLAIGDGANDVSMIQMADVGVGIS 903
V P +KA V V+ + +T +GDG ND + ADVG+ I
Sbjct: 188 AEVLPHEKAEKVKEVQQKY--VTAMVGDGVNDAPALAQADVGIAIG 231
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 858 CRVAPLQKAGIVALVKTRTSDMTLAIGDGANDVSMIQMADVGVGIS 903
V P +KA V V+ + +T +GDG ND + ADVG+ I
Sbjct: 188 AEVLPHEKAEKVKEVQQKY--VTAMVGDGVNDAPALAQADVGIAIG 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,818,700
Number of Sequences: 62578
Number of extensions: 1311401
Number of successful extensions: 2801
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2726
Number of HSP's gapped (non-prelim): 74
length of query: 1184
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1074
effective length of database: 8,089,757
effective search space: 8688399018
effective search space used: 8688399018
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)