BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001028
(1184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2K2C|A Chain A, Solution Nmr Structure Of N-Terminal Domain Of Human Pirh2.
Northeast Structural Genomics Consortium (Nesg) Target
Ht2a
Length = 137
Score = 113 bits (282), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 74/128 (57%), Gaps = 6/128 (4%)
Query: 984 EKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGP 1043
E+ GCEHY R C L+A CC KL+TCR CHD DH +DR E+ C+ C K+Q
Sbjct: 14 ERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEVQCINCEKIQHAQQ 73
Query: 1044 VCTTLSCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAK 1103
C CS L +YYC IC FD ++ YHC C +CR+G DFFHC+ CN CLA
Sbjct: 74 TCE--ECSTL-FGEYYCDICHLFDKDKKQYHCENCGICRIGP--KEDFFHCLKCNLCLAM 128
Query: 1104 KLVD-HKC 1110
L HKC
Sbjct: 129 NLQGRHKC 136
>pdb|2DKT|A Chain A, Solution Structure Of The Chy Zinc Finger Domain Of The Ring
Finger And Chy Zinc Finger Domain-Containing Protein 1
From Mus Musculus
Length = 143
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 73/127 (57%), Gaps = 6/127 (4%)
Query: 989 GCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTL 1048
GCEHY R C L+A CC KL+TCR CHD DH +DR E+ C+ C K+Q C
Sbjct: 18 GCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCE-- 75
Query: 1049 SCSGLSMAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKLVD- 1107
CS L +YYC IC FD ++ YHC C +CR+G DFFHC+ CN CL L
Sbjct: 76 DCSTL-FGEYYCSICHLFDKDKRQYHCESCGICRIGP--KEDFFHCLKCNLCLTTNLRGK 132
Query: 1108 HKCREKG 1114
HKC E G
Sbjct: 133 HKCIESG 139
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger And
Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICS 1161
+ CPIC + + TS LPCGH +H C++ Y CP+CS
Sbjct: 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCS 50
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKS 1163
+ NCPIC + + TS LPCGH +H C++ Y CP+C S
Sbjct: 5 QQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCMHS 52
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSL 1164
GLE CP+C + + +VR LPC H H C + H CP+C KSL
Sbjct: 15 GLE--CPVCKED-YALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62
>pdb|3U9M|A Chain A, Structure Of Reduced Human Fbxl5 Hemerythrin Like Domain
pdb|3U9M|C Chain C, Structure Of Reduced Human Fbxl5 Hemerythrin Like Domain
pdb|3U9M|E Chain E, Structure Of Reduced Human Fbxl5 Hemerythrin Like Domain
pdb|3U9M|G Chain G, Structure Of Reduced Human Fbxl5 Hemerythrin Like Domain
Length = 160
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 70 TNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLF 129
TN D LL+ + +K H E+E I L R + I +S E +
Sbjct: 32 TNFSNNNDFRALLQSLYATFKEFKMHEQIENEYIIGLLQQRSQTIYNVHSDNKLSEML-- 89
Query: 130 DQLFELLNSSMRNEE---SYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEE 184
LFE +++NE +Y ++L A HM +EEE P+L+E F++EE
Sbjct: 90 -SLFEKGLKNVKNEYEQLNYAKQLKERLEAFTRDFLPHMKEEEEVFQPMLMEYFTYEE 146
>pdb|3V5X|A Chain A, Structure Of Fbxl5 Hemerythrin Domain, C2 Cell
pdb|3V5X|B Chain B, Structure Of Fbxl5 Hemerythrin Domain, C2 Cell
pdb|3V5Y|A Chain A, Structure Of Fbxl5 Hemerythrin Domain, P2(1) Cell
pdb|3V5Y|B Chain B, Structure Of Fbxl5 Hemerythrin Domain, P2(1) Cell
pdb|3V5Y|C Chain C, Structure Of Fbxl5 Hemerythrin Domain, P2(1) Cell
pdb|3V5Y|D Chain D, Structure Of Fbxl5 Hemerythrin Domain, P2(1) Cell
pdb|3V5Z|A Chain A, Structure Of Fbxl5 Hemerythrin Domain, C2 Cell, Grown
Anaerobically
pdb|3V5Z|B Chain B, Structure Of Fbxl5 Hemerythrin Domain, C2 Cell, Grown
Anaerobically
Length = 161
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 70 TNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLF 129
TN D LL+ + +K H E+E I L R + I +S E +
Sbjct: 32 TNFSNNNDFRALLQSLYATFKEFKMHEQIENEYIIGLLQQRSQTIYNVHSDNKLSEML-- 89
Query: 130 DQLFELLNSSMRNEE---SYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEE 184
LFE +++NE +Y ++L A HM +EEE P+L+E F++EE
Sbjct: 90 -SLFEKGLKNVKNEYEQLNYAKQLKERLEAFTRDFLPHMKEEEEVFQPMLMEYFTYEE 146
>pdb|3U9J|A Chain A, Crystal Structure Of Oxidized Human Fbxl5 Hemerythrin Like
Domain
pdb|3U9J|B Chain B, Crystal Structure Of Oxidized Human Fbxl5 Hemerythrin Like
Domain
Length = 160
Score = 38.5 bits (88), Expect = 0.024, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 6/118 (5%)
Query: 70 TNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHEGESVLF 129
TN D LL+ + +K H E+E I L R + I +S E +
Sbjct: 32 TNFSNNNDFRALLQSLYATFKEFKXHEQIENEYIIGLLQQRSQTIYNVHSDNKLSEXL-- 89
Query: 130 DQLFELLNSSMRNEE---SYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEE 184
LFE +++NE +Y ++L A H +EEE P L E F++EE
Sbjct: 90 -SLFEKGLKNVKNEYEQLNYAKQLKERLEAFTRDFLPHXKEEEEVFQPXLXEYFTYEE 146
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38
Length = 75
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 1116 ETNCPIC-CDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165
+T C +C CDF S +R LPC H H+ C + ++ CPIC G
Sbjct: 23 QTLCVVCMCDF--ESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71
>pdb|3O8I|A Chain A, Structure Of 14-3-3 Isoform Sigma In Complex With A C-Raf1
Peptide And A Stabilizing Small Molecule Fragment
Length = 239
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 759 NSLESCDQNETVRKYNEKA-TELQGMCKSIRVTLDQHVFRE 798
N S ++ VR+Y EK TELQG+C ++ LD H+ +E
Sbjct: 78 NEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKE 118
>pdb|3T0L|A Chain A, Small-Molecule Inhibitors Of 14-3-3 Protein-Protein
Interactions From Virtual Screening
pdb|3T0M|A Chain A, Small-Molecule Inhibitors Of 14-3-3 Protein-Protein
Interactions From Virtual Screening
Length = 235
Score = 33.5 bits (75), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 759 NSLESCDQNETVRKYNEKA-TELQGMCKSIRVTLDQHVFRE 798
N S ++ VR+Y EK TELQG+C ++ LD H+ +E
Sbjct: 74 NEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKE 114
>pdb|4HQW|A Chain A, Molecular Tweezers Modulate 14-3-3 Protein-protein
Interactions
Length = 236
Score = 33.5 bits (75), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 759 NSLESCDQNETVRKYNEKA-TELQGMCKSIRVTLDQHVFRE 798
N S ++ VR+Y EK TELQG+C ++ LD H+ +E
Sbjct: 75 NEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKE 115
>pdb|3P1R|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38vN166H IN
COMPLEX WITH Task-3 Peptide
pdb|3P1S|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38nN166H IN
COMPLEX WITH Task-3 Peptide And Stabilizer Fusicoccin A
pdb|3SPR|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38vN166H IN
COMPLEX WITH Task-3 Peptide And Stabilizer Fc-Thf
pdb|3SMK|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38vN166H IN
COMPLEX WITH Task-3 Peptide And Stabilizer Cotylenin A
Length = 236
Score = 33.5 bits (75), Expect = 0.80, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 759 NSLESCDQNETVRKYNEKA-TELQGMCKSIRVTLDQHVFRE 798
N S ++ VR+Y EK TELQG+C ++ LD H+ +E
Sbjct: 75 NEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKE 115
>pdb|3LW1|A Chain A, Binary Complex Of 14-3-3 Sigma And P53 Pt387-Peptide
Length = 253
Score = 33.5 bits (75), Expect = 0.80, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 759 NSLESCDQNETVRKYNEKA-TELQGMCKSIRVTLDQHVFRE 798
N S ++ VR+Y EK TELQG+C ++ LD H+ +E
Sbjct: 75 NEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKE 115
>pdb|3P1P|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38nN166H IN
COMPLEX WITH Task-3 Peptide
pdb|3P1Q|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38nN166H IN
COMPLEX WITH Task-3 Peptide And Stabilizer Fusicoccin A
pdb|3SML|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38nN166H IN
COMPLEX WITH Task-3 Peptide And Stabilizer Fusicoccin A
Aglycone
pdb|3SMM|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38nN166H IN
COMPLEX WITH Task-3 Peptide And Stabilizer Fusicoccin J
Aglycone
pdb|3SMN|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38nN166H IN
COMPLEX WITH Task-3 Peptide And Stabilizer Fusicoccin
A-Thf
Length = 236
Score = 33.5 bits (75), Expect = 0.81, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 759 NSLESCDQNETVRKYNEKA-TELQGMCKSIRVTLDQHVFRE 798
N S ++ VR+Y EK TELQG+C ++ LD H+ +E
Sbjct: 75 NEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKE 115
>pdb|3IQJ|A Chain A, Crystal Structure Of Human 14-3-3 Sigma In Complex With
Raf1 Peptide (10mer)
pdb|3IQU|A Chain A, Crystal Structure Of Human 14-3-3 Sigma In Complex With
Raf1 Peptide (6mer)
pdb|3IQV|A Chain A, Crystal Structure Of Human 14-3-3 Sigma In Complex With
Raf1 Peptide (6mer) And Stabilisator Fusicoccin
pdb|3MHR|A Chain A, 14-3-3 Sigma In Complex With Yap Ps127-Peptide
Length = 236
Score = 33.5 bits (75), Expect = 0.81, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 759 NSLESCDQNETVRKYNEKA-TELQGMCKSIRVTLDQHVFRE 798
N S ++ VR+Y EK TELQG+C ++ LD H+ +E
Sbjct: 75 NEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKE 115
>pdb|4DAT|A Chain A, Structure Of 14-3-3 Sigma In Complex With Padi6 14-3-3
Binding Motif Ii
pdb|4DAU|A Chain A, Structure Of 14-3-3 Sigma In Complex With Padi6 14-3-3
Binding Motif I
pdb|4HRU|A Chain A, Molecular Tweezers Modulate 14-3-3 Protein-protein
Interactions
Length = 234
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 759 NSLESCDQNETVRKYNEKA-TELQGMCKSIRVTLDQHVFRE 798
N S ++ VR+Y EK TELQG+C ++ LD H+ +E
Sbjct: 73 NEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKE 113
>pdb|3SMO|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38vN166H IN
COMPLEX WITH Task-3 Peptide And Stabilizer Fusicoccin J
Aglycone
Length = 235
Score = 33.1 bits (74), Expect = 0.86, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 759 NSLESCDQNETVRKYNEKA-TELQGMCKSIRVTLDQHVFRE 798
N S ++ VR+Y EK TELQG+C ++ LD H+ +E
Sbjct: 74 NEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKE 114
>pdb|3U9X|A Chain A, Covalent Attachment Of Pyridoxal-Phosphate Derivatives To
14-3-3 Proteins
Length = 235
Score = 33.1 bits (74), Expect = 0.86, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 759 NSLESCDQNETVRKYNEKA-TELQGMCKSIRVTLDQHVFRE 798
N S ++ VR+Y EK TELQG+C ++ LD H+ +E
Sbjct: 74 NEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKE 114
>pdb|3P1N|A Chain A, Crystal Structure Of Human 14-3-3 Sigma In Complex With
Task-3 Peptide
pdb|3P1O|A Chain A, Crystal Structure Of Human 14-3-3 Sigma In Complex With
Task-3 Peptide And Stabilisator Fusicoccin A
pdb|3UX0|A Chain A, Crystal Structure Of Human 14-3-3 Sigma In Complex With
Task-3 Peptide And Stabilizer Fusicoccin H
Length = 235
Score = 33.1 bits (74), Expect = 0.86, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 759 NSLESCDQNETVRKYNEKA-TELQGMCKSIRVTLDQHVFRE 798
N S ++ VR+Y EK TELQG+C ++ LD H+ +E
Sbjct: 74 NEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKE 114
>pdb|1YWT|A Chain A, Crystal Structure Of The Human Sigma Isoform Of 14-3-3 In
Complex With A Mode-1 Phosphopeptide
pdb|1YWT|B Chain B, Crystal Structure Of The Human Sigma Isoform Of 14-3-3 In
Complex With A Mode-1 Phosphopeptide
pdb|1YZ5|A Chain A, The Crystal Structure Of 14-3-3-Sigma At 2.8 Angstrom
Resolution
pdb|1YZ5|B Chain B, The Crystal Structure Of 14-3-3-Sigma At 2.8 Angstrom
Resolution
Length = 248
Score = 33.1 bits (74), Expect = 0.98, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 759 NSLESCDQNETVRKYNEKA-TELQGMCKSIRVTLDQHVFRE 798
N S ++ VR+Y EK TELQG+C ++ LD H+ +E
Sbjct: 70 NEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKE 110
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPIC 1160
G E CPICC + LPC H+ H C + CP+C
Sbjct: 38 GQEMCCPICCSE-YVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVC 83
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 1119 CPICCDFLFTSSATVRALP-CGHFMHSDCFQAYTCSHYICPIC 1160
C +C L R LP CGH H++C + SH CP+C
Sbjct: 8 CAVCLAEL-EDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLC 49
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPIC 1160
C IC L VR LPC H H C + ++ CPIC
Sbjct: 16 KCTICLSIL-EEGEDVRRLPCMHLFHQVCVDQWLITNKKCPIC 57
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 31.6 bits (70), Expect = 3.1, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 1114 GLETNCPICCDF---LFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVS 1170
G +CPIC D + + + + CGH S C + + CP C K +
Sbjct: 1 GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 60
Query: 1171 PLF 1173
P++
Sbjct: 61 PIY 63
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 31.2 bits (69), Expect = 3.7, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 1118 NCPICCDF---LFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVSPLF 1173
+CPIC D + + + + CGH S C + + CP C K + P++
Sbjct: 12 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70
>pdb|3QHQ|A Chain A, Structure Of Crispr-Associated Protein Csn2
pdb|3QHQ|B Chain B, Structure Of Crispr-Associated Protein Csn2
Length = 229
Score = 31.2 bits (69), Expect = 4.1, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 20/116 (17%)
Query: 702 IVFPALESKETLSN---------------VSHSYTLDHKQEEKLFEDISSALSELTELHE 746
I FP L+ LSN V H Y D + KLF+D +L + TEL
Sbjct: 4 INFPILDEPLVLSNATILTIEDVSVYSSLVKHFYQYDVDEHLKLFDDKQKSL-KATEL-- 60
Query: 747 CLSTDLTG-DLTRNSLESCDQNETVRKYNEKATELQGMCKSIRVTLDQHVFREELE 801
L TD+ G D+ + + ++NEK E++ M + + T+ + + E LE
Sbjct: 61 MLVTDILGYDVNSAPILKLIHGDLENQFNEKP-EVKSMVEKLAATITELIAFECLE 115
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 1118 NCPICCDF---LFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVSPLFR 1174
+CPIC D + + + + CGH S C + + CP C K + P++
Sbjct: 9 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 68
Query: 1175 TTSVV 1179
+ V
Sbjct: 69 GSGTV 73
Score = 30.8 bits (68), Expect = 4.6, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 1096 TCNCCLAKKLVDHKCREK----GLETNCPICCDF---LFTSSATVRALPCGHFMHSDCFQ 1148
TC C +K ++HK +CPIC D + + + + CGH S C +
Sbjct: 50 TCPTC--RKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLR 107
Query: 1149 AYTCSHYICPICSKSLGDMAVSPLF 1173
+ CP C K + P++
Sbjct: 108 DSLKNANTCPTCRKKINHKRYHPIY 132
>pdb|2CO8|A Chain A, Solution Structures Of The Lim Domain Of Human Nedd9
Interacting Protein With Calponin Homology And Lim
Domains
Length = 82
Score = 30.4 bits (67), Expect = 6.3, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 1111 REKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICP 1158
+E G C +C + L+ R GHF H CF+ +TC + P
Sbjct: 10 QEAGAGDLCALCGEHLYVLE---RLCVNGHFFHRSCFRCHTCEATLWP 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,945,133
Number of Sequences: 62578
Number of extensions: 1169023
Number of successful extensions: 2889
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2867
Number of HSP's gapped (non-prelim): 40
length of query: 1184
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1074
effective length of database: 8,089,757
effective search space: 8688399018
effective search space used: 8688399018
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)