Query 001028
Match_columns 1184
No_of_seqs 531 out of 1512
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 07:17:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 100.0 2.2E-47 7.6E-52 379.5 7.7 138 975-1117 4-142 (143)
2 2p0n_A Hypothetical protein NM 99.5 1E-12 3.5E-17 134.9 18.3 145 291-443 15-168 (172)
3 2p0n_A Hypothetical protein NM 99.4 1.1E-12 3.6E-17 134.8 16.1 149 41-194 15-168 (172)
4 3cax_A Uncharacterized protein 99.2 7E-11 2.4E-15 135.3 16.1 149 291-443 8-166 (369)
5 2ecm_A Ring finger and CHY zin 99.2 1.2E-11 4E-16 103.4 4.0 52 1114-1165 3-54 (55)
6 1iym_A EL5; ring-H2 finger, ub 99.1 2.4E-11 8.2E-16 101.6 4.4 50 1115-1165 4-54 (55)
7 2ep4_A Ring finger protein 24; 99.1 2.3E-11 7.9E-16 107.9 4.1 58 1112-1170 11-68 (74)
8 1x4j_A Ring finger protein 38; 99.1 1.7E-11 5.8E-16 109.3 3.1 53 1114-1167 21-73 (75)
9 2ecl_A Ring-box protein 2; RNF 99.1 2.5E-11 8.6E-16 110.5 3.7 50 1116-1165 26-75 (81)
10 2kiz_A E3 ubiquitin-protein li 99.1 4.1E-11 1.4E-15 104.9 3.8 53 1113-1166 11-63 (69)
11 2l0b_A E3 ubiquitin-protein li 99.1 3.9E-11 1.3E-15 111.4 3.2 52 1114-1166 38-89 (91)
12 2ect_A Ring finger protein 126 99.0 9.8E-11 3.4E-15 104.9 4.0 52 1115-1167 14-65 (78)
13 1v87_A Deltex protein 2; ring- 99.0 1.2E-10 4.2E-15 111.6 4.7 54 1114-1167 23-95 (114)
14 3cax_A Uncharacterized protein 99.0 4.2E-09 1.4E-13 120.6 16.2 150 41-192 8-164 (369)
15 2ea6_A Ring finger protein 4; 98.9 2.4E-10 8.3E-15 99.3 2.6 51 1115-1165 14-67 (69)
16 3ng2_A RNF4, snurf, ring finge 98.9 2.9E-10 1E-14 99.6 3.0 53 1114-1166 8-63 (71)
17 3dpl_R Ring-box protein 1; ubi 98.9 4.1E-10 1.4E-14 108.1 4.2 33 1132-1164 67-99 (106)
18 2xeu_A Ring finger protein 4; 98.9 3.8E-10 1.3E-14 96.6 2.9 52 1115-1166 2-56 (64)
19 1chc_A Equine herpes virus-1 r 98.9 6E-10 2.1E-14 97.0 3.9 51 1115-1168 4-54 (68)
20 2ecn_A Ring finger protein 141 98.8 4.9E-10 1.7E-14 98.3 1.3 52 1115-1171 14-65 (70)
21 2ct2_A Tripartite motif protei 98.8 1.7E-09 6E-14 98.4 4.6 52 1115-1166 14-68 (88)
22 2djb_A Polycomb group ring fin 98.8 3E-09 1E-13 94.1 4.6 50 1115-1167 14-63 (72)
23 4a0k_B E3 ubiquitin-protein li 98.8 7.4E-10 2.5E-14 108.1 0.4 50 1115-1164 47-110 (117)
24 2d8t_A Dactylidin, ring finger 98.8 1.8E-09 6.1E-14 95.3 2.8 49 1114-1166 13-61 (71)
25 1g25_A CDK-activating kinase a 98.7 4.9E-09 1.7E-13 90.8 3.9 51 1116-1166 3-55 (65)
26 4ayc_A E3 ubiquitin-protein li 98.7 4.8E-09 1.6E-13 104.4 2.8 47 1116-1166 53-99 (138)
27 2ecy_A TNF receptor-associated 98.7 1.2E-08 4.2E-13 88.5 4.7 49 1115-1167 14-63 (66)
28 2csy_A Zinc finger protein 183 98.7 9E-09 3.1E-13 92.9 3.9 47 1115-1165 14-60 (81)
29 2d8s_A Cellular modulator of i 98.7 1E-08 3.5E-13 93.6 3.9 51 1113-1165 12-69 (80)
30 2yur_A Retinoblastoma-binding 98.7 1.3E-08 4.4E-13 90.7 4.5 51 1115-1169 14-67 (74)
31 1e4u_A Transcriptional repress 98.6 2.1E-08 7.3E-13 91.0 5.3 59 1115-1175 10-71 (78)
32 4ap4_A E3 ubiquitin ligase RNF 98.6 9.4E-09 3.2E-13 99.8 2.8 52 1115-1166 6-60 (133)
33 2ysl_A Tripartite motif-contai 98.6 1.6E-08 5.6E-13 89.0 3.8 49 1114-1166 18-69 (73)
34 2y43_A E3 ubiquitin-protein li 98.6 1.7E-08 5.9E-13 94.5 3.2 48 1116-1166 22-69 (99)
35 3lrq_A E3 ubiquitin-protein li 98.5 2.3E-08 7.8E-13 94.3 2.9 48 1116-1166 22-70 (100)
36 2ecv_A Tripartite motif-contai 98.5 5.7E-08 2E-12 87.3 4.8 48 1115-1166 18-71 (85)
37 4ap4_A E3 ubiquitin ligase RNF 98.5 3.5E-08 1.2E-12 95.8 3.5 53 1114-1166 70-125 (133)
38 2ckl_A Polycomb group ring fin 98.5 4.3E-08 1.5E-12 93.3 3.8 49 1115-1166 14-62 (108)
39 1t1h_A Gspef-atpub14, armadill 98.5 4.4E-08 1.5E-12 87.5 3.6 48 1115-1166 7-55 (78)
40 2egp_A Tripartite motif-contai 98.5 3.4E-08 1.1E-12 88.2 2.8 48 1115-1166 11-65 (79)
41 2ecw_A Tripartite motif-contai 98.5 5.7E-08 1.9E-12 87.3 4.2 48 1115-1166 18-71 (85)
42 2ecj_A Tripartite motif-contai 98.5 5.7E-08 1.9E-12 81.6 3.8 42 1115-1160 14-58 (58)
43 2ysj_A Tripartite motif-contai 98.5 6.2E-08 2.1E-12 83.2 4.0 42 1115-1160 19-63 (63)
44 2ckl_B Ubiquitin ligase protei 98.5 4.5E-08 1.5E-12 99.9 3.3 48 1116-1166 54-102 (165)
45 3fl2_A E3 ubiquitin-protein li 98.4 7.1E-08 2.4E-12 94.0 3.3 47 1116-1166 52-99 (124)
46 1jm7_A BRCA1, breast cancer ty 98.4 1.7E-07 5.8E-12 89.0 4.9 47 1116-1166 21-70 (112)
47 3ztg_A E3 ubiquitin-protein li 98.4 1.5E-07 5.1E-12 86.7 3.3 47 1115-1165 12-61 (92)
48 3l11_A E3 ubiquitin-protein li 98.4 8.1E-08 2.8E-12 92.3 1.5 47 1116-1166 15-62 (115)
49 2vje_A E3 ubiquitin-protein li 98.3 1.5E-07 5E-12 82.1 2.2 52 1112-1167 4-58 (64)
50 2ct0_A Non-SMC element 1 homol 98.3 2.6E-07 8.8E-12 83.3 3.5 47 1116-1165 15-63 (74)
51 1z6u_A NP95-like ring finger p 98.3 2.5E-07 8.7E-12 93.6 3.0 47 1116-1166 78-125 (150)
52 3hct_A TNF receptor-associated 98.3 2.1E-07 7E-12 90.1 2.1 48 1115-1166 17-65 (118)
53 1rmd_A RAG1; V(D)J recombinati 98.2 3.9E-07 1.3E-11 87.6 2.9 47 1116-1166 23-70 (116)
54 2vje_B MDM4 protein; proto-onc 98.2 3.2E-07 1.1E-11 79.7 1.8 53 1114-1169 5-59 (63)
55 4ic3_A E3 ubiquitin-protein li 98.2 4.8E-07 1.6E-11 80.8 2.1 45 1115-1167 23-68 (74)
56 2y1n_A E3 ubiquitin-protein li 98.1 8.8E-07 3E-11 102.1 3.9 48 1115-1166 331-379 (389)
57 1bor_A Transcription factor PM 98.1 8.7E-07 3E-11 75.0 2.5 45 1114-1165 4-48 (56)
58 1jm7_B BARD1, BRCA1-associated 98.1 1E-06 3.5E-11 85.1 2.6 45 1116-1165 22-66 (117)
59 2kr4_A Ubiquitin conjugation f 98.1 1.2E-06 4E-11 80.6 2.7 48 1115-1166 13-60 (85)
60 2kre_A Ubiquitin conjugation f 98.0 1.4E-06 4.6E-11 82.7 2.4 48 1115-1166 28-75 (100)
61 1wgm_A Ubiquitin conjugation f 98.0 2.2E-06 7.5E-11 80.9 3.0 48 1115-1166 21-69 (98)
62 3k1l_B Fancl; UBC, ring, RWD, 98.0 1.6E-06 5.6E-11 97.6 2.0 52 1114-1165 306-372 (381)
63 2ecg_A Baculoviral IAP repeat- 98.0 3.4E-06 1.2E-10 75.3 3.5 45 1116-1168 25-70 (75)
64 3knv_A TNF receptor-associated 98.0 1.1E-06 3.9E-11 88.0 0.2 46 1115-1164 30-76 (141)
65 2ea5_A Cell growth regulator w 97.9 5.6E-06 1.9E-10 73.1 4.2 50 1114-1171 13-63 (68)
66 2yho_A E3 ubiquitin-protein li 97.9 2.9E-06 1E-10 77.0 1.8 54 1116-1177 18-72 (79)
67 1vyx_A ORF K3, K3RING; zinc-bi 97.8 1E-05 3.5E-10 69.9 3.6 49 1112-1164 2-57 (60)
68 3hcs_A TNF receptor-associated 97.8 6.9E-06 2.4E-10 84.1 2.0 48 1115-1166 17-65 (170)
69 2c2l_A CHIP, carboxy terminus 97.7 1.3E-05 4.3E-10 87.1 3.3 48 1115-1166 207-255 (281)
70 1wim_A KIAA0161 protein; ring 97.7 1.4E-05 4.9E-10 74.1 2.3 48 1115-1163 4-61 (94)
71 2yu4_A E3 SUMO-protein ligase 97.5 2.9E-05 9.9E-10 72.4 2.7 46 1115-1163 6-59 (94)
72 3htk_C E3 SUMO-protein ligase 97.4 4.2E-05 1.4E-09 83.8 2.3 48 1115-1165 180-231 (267)
73 2f42_A STIP1 homology and U-bo 97.4 4.8E-05 1.6E-09 79.4 2.5 47 1116-1166 106-153 (179)
74 3t6p_A Baculoviral IAP repeat- 97.4 3.7E-05 1.3E-09 87.7 1.7 44 1116-1167 295-339 (345)
75 2bay_A PRE-mRNA splicing facto 97.2 0.00011 3.9E-09 63.5 1.7 48 1116-1166 3-50 (61)
76 3vk6_A E3 ubiquitin-protein li 96.6 0.00074 2.5E-08 63.9 2.3 50 1118-1170 3-53 (101)
77 3u9j_A F-BOX/LRR-repeat protei 96.5 0.016 5.5E-07 57.4 10.8 146 44-194 8-156 (160)
78 3nw0_A Non-structural maintena 95.6 0.0059 2E-07 66.3 3.7 46 1117-1165 181-228 (238)
79 3u9j_A F-BOX/LRR-repeat protei 94.3 0.2 6.7E-06 49.8 9.9 144 294-442 8-155 (160)
80 2k2d_A Ring finger and CHY zin 87.4 0.11 3.8E-06 47.4 0.0 24 1157-1180 1-24 (79)
81 2ko5_A Ring finger protein Z; 85.3 0.18 6.1E-06 47.2 0.2 45 1116-1166 28-73 (99)
82 2jrp_A Putative cytoplasmic pr 78.0 0.73 2.5E-05 42.2 1.4 49 999-1064 3-58 (81)
83 3v43_A Histone acetyltransfera 76.5 1.1 3.8E-05 42.9 2.3 73 1087-1162 22-111 (112)
84 2kwj_A Zinc finger protein DPF 73.5 0.62 2.1E-05 44.9 -0.3 87 1076-1166 2-111 (114)
85 2ysm_A Myeloid/lymphoid or mix 70.6 1.6 5.4E-05 41.6 1.8 45 1118-1163 56-104 (111)
86 2rgt_A Fusion of LIM/homeobox 65.8 2.9 9.8E-05 42.4 2.7 47 1115-1171 64-110 (169)
87 2jne_A Hypothetical protein YF 64.7 1.8 6.1E-05 40.8 0.8 49 999-1064 33-88 (101)
88 2jun_A Midline-1; B-BOX, TRIM, 63.5 3.2 0.00011 38.3 2.3 34 1116-1151 3-38 (101)
89 4ayb_P DNA-directed RNA polyme 61.8 3.9 0.00013 33.7 2.2 28 1055-1082 1-33 (48)
90 4bbq_A Lysine-specific demethy 56.0 1.9 6.6E-05 41.2 -0.7 28 1136-1163 79-114 (117)
91 2lbm_A Transcriptional regulat 55.4 6.6 0.00023 39.5 3.1 90 1070-1163 12-117 (142)
92 2jtn_A LIM domain-binding prot 55.4 11 0.00038 38.5 4.9 49 1115-1173 118-166 (182)
93 1we9_A PHD finger family prote 51.6 3.1 0.00011 35.7 -0.0 49 1115-1163 5-58 (64)
94 2lri_C Autoimmune regulator; Z 51.0 8.7 0.0003 33.6 2.8 46 1115-1164 11-60 (66)
95 1x61_A Thyroid receptor intera 50.4 9 0.00031 32.9 2.8 45 1116-1171 5-49 (72)
96 1x4l_A Skeletal muscle LIM-pro 49.9 9.8 0.00034 32.7 2.9 41 1116-1166 5-47 (72)
97 2xqn_T Testin, TESS; metal-bin 48.5 7.3 0.00025 37.2 2.1 41 1115-1165 62-104 (126)
98 3ql9_A Transcriptional regulat 47.6 9.1 0.00031 37.9 2.6 66 1094-1163 34-111 (129)
99 2dkt_A Ring finger and CHY zin 47.5 4.4 0.00015 40.8 0.3 26 1077-1103 85-110 (143)
100 3lqh_A Histone-lysine N-methyl 47.0 6.4 0.00022 41.1 1.5 49 1117-1166 3-66 (183)
101 4rxn_A Rubredoxin; electron tr 46.5 9.2 0.00031 32.5 2.1 14 1055-1068 1-15 (54)
102 1wil_A KIAA1045 protein; ring 44.5 16 0.00055 33.7 3.5 34 1115-1150 14-47 (89)
103 2v3b_B Rubredoxin 2, rubredoxi 43.9 11 0.00037 32.1 2.1 14 1055-1068 1-15 (55)
104 3rfy_A Peptidyl-prolyl CIS-tra 43.1 1.2E+02 0.0041 34.9 11.2 79 73-155 45-143 (369)
105 1g47_A Pinch protein; LIM doma 42.9 12 0.00042 32.3 2.5 44 1114-1167 9-52 (77)
106 6rxn_A Rubredoxin; electron tr 42.8 10 0.00035 31.1 1.8 26 1055-1080 2-38 (46)
107 3agt_A Hemerythrin-like domain 41.8 40 0.0014 32.8 6.2 50 361-421 18-67 (136)
108 2k16_A Transcription initiatio 40.2 7.2 0.00025 34.4 0.5 49 1116-1165 18-70 (75)
109 1x6a_A LIMK-2, LIM domain kina 37.4 19 0.00064 31.6 2.8 43 1116-1170 15-57 (81)
110 1wyh_A SLIM 2, skeletal muscle 37.4 14 0.00049 31.5 2.0 41 1116-1166 5-45 (72)
111 2egq_A FHL1 protein; LIM domai 37.4 17 0.00057 31.6 2.4 42 1115-1166 14-58 (77)
112 2kn9_A Rubredoxin; metalloprot 37.2 16 0.00054 33.5 2.2 15 1054-1068 24-39 (81)
113 1x63_A Skeletal muscle LIM-pro 36.9 18 0.0006 31.8 2.6 43 1115-1167 14-56 (82)
114 1x4k_A Skeletal muscle LIM-pro 36.9 17 0.00058 31.0 2.4 42 1116-1167 5-46 (72)
115 2cor_A Pinch protein; LIM doma 36.6 19 0.00066 31.7 2.7 41 1115-1167 14-54 (79)
116 1dx8_A Rubredoxin; electron tr 36.4 15 0.0005 32.8 1.9 14 1054-1067 4-18 (70)
117 2pv0_B DNA (cytosine-5)-methyl 36.2 23 0.00079 41.0 4.0 86 1073-1164 51-149 (386)
118 1zfo_A LAsp-1; LIM domain, zin 35.9 13 0.00045 27.7 1.3 29 1116-1147 3-31 (31)
119 2d8x_A Protein pinch; LIM doma 35.7 19 0.00066 30.6 2.5 40 1116-1167 5-44 (70)
120 2l3k_A Rhombotin-2, linker, LI 35.1 16 0.00056 34.9 2.2 38 1118-1165 10-47 (123)
121 2ehe_A Four and A half LIM dom 33.5 23 0.0008 31.0 2.8 41 1116-1166 15-55 (82)
122 1x68_A FHL5 protein; four-and- 33.1 19 0.00066 31.2 2.2 41 1116-1166 5-47 (76)
123 1s24_A Rubredoxin 2; electron 32.9 16 0.00054 33.9 1.5 17 1052-1068 30-47 (87)
124 3f6q_B LIM and senescent cell 32.7 16 0.00055 30.9 1.5 43 1115-1167 10-52 (72)
125 1rij_A E6APN1 peptide; Trp-CAG 31.3 24 0.00083 24.9 1.9 19 234-252 2-21 (26)
126 1twf_L ABC10-alpha, DNA-direct 30.7 23 0.00079 31.5 2.2 25 1056-1080 27-53 (70)
127 2ysm_A Myeloid/lymphoid or mix 30.3 20 0.00069 33.8 1.9 37 1114-1151 5-41 (111)
128 2jrp_A Putative cytoplasmic pr 30.3 22 0.00075 32.6 2.0 53 1091-1173 18-70 (81)
129 1f62_A Transcription factor WS 30.1 27 0.00091 28.4 2.4 45 1118-1163 2-50 (51)
130 1nyp_A Pinch protein; LIM doma 29.0 20 0.00067 30.2 1.4 43 1116-1171 5-47 (66)
131 3jyw_9 60S ribosomal protein L 28.9 23 0.00079 31.7 1.9 11 1070-1080 42-52 (72)
132 2xjy_A Rhombotin-2; oncoprotei 27.8 24 0.00081 33.8 2.0 45 1118-1172 68-112 (131)
133 2vpb_A Hpygo1, pygopus homolog 27.4 8.4 0.00029 33.6 -1.2 48 1115-1162 7-65 (65)
134 2kdx_A HYPA, hydrogenase/ureas 27.3 26 0.00087 33.7 2.1 26 1056-1081 72-99 (119)
135 2cup_A Skeletal muscle LIM-pro 27.2 29 0.001 31.5 2.4 44 1117-1165 34-77 (101)
136 3cc2_Z 50S ribosomal protein L 27.1 17 0.00056 35.4 0.7 30 1055-1084 58-90 (116)
137 2co8_A NEDD9 interacting prote 27.0 34 0.0012 30.3 2.7 43 1114-1167 13-55 (82)
138 3izc_m 60S ribosomal protein R 26.8 22 0.00075 33.3 1.4 15 1070-1084 52-66 (92)
139 1mm2_A MI2-beta; PHD, zinc fin 26.7 27 0.00091 29.9 1.8 47 1114-1164 7-57 (61)
140 2cur_A Skeletal muscle LIM-pro 26.6 33 0.0011 29.0 2.5 39 1116-1166 5-43 (69)
141 1e8j_A Rubredoxin; iron-sulfur 26.6 36 0.0012 28.5 2.5 13 1055-1067 1-14 (52)
142 1vq8_Z 50S ribosomal protein L 26.5 16 0.00056 33.5 0.5 30 1056-1085 26-58 (83)
143 1v6g_A Actin binding LIM prote 26.5 38 0.0013 29.7 2.9 50 1109-1170 8-57 (81)
144 1wig_A KIAA1808 protein; LIM d 26.0 46 0.0016 28.8 3.3 39 1116-1166 5-43 (73)
145 3u5n_A E3 ubiquitin-protein li 26.0 19 0.00064 37.8 0.9 47 1114-1164 5-55 (207)
146 2xb1_A Pygopus homolog 2, B-ce 25.1 9.1 0.00031 36.4 -1.5 50 1116-1165 3-63 (105)
147 1wii_A Hypothetical UPF0222 pr 25.1 22 0.00074 32.8 1.0 12 1114-1125 45-56 (85)
148 2dar_A PDZ and LIM domain prot 25.0 33 0.0011 30.8 2.3 42 1113-1166 22-63 (90)
149 3oao_A Uncharacterized protein 24.8 1.4E+02 0.0049 30.0 7.0 73 143-216 41-126 (147)
150 3iz5_m 60S ribosomal protein L 24.8 23 0.00079 33.2 1.1 10 1071-1080 53-62 (92)
151 2kgg_A Histone demethylase jar 24.6 24 0.00083 29.1 1.2 45 1117-1161 3-52 (52)
152 2l5u_A Chromodomain-helicase-D 23.9 31 0.0011 29.4 1.8 47 1113-1163 8-58 (61)
153 3cw1_L U1 small nuclear ribonu 23.8 20 0.00069 32.5 0.6 12 1055-1066 1-12 (77)
154 2ajj_A NS5A, nonstructural pro 23.7 65 0.0022 23.9 3.0 21 645-665 5-25 (28)
155 1wev_A Riken cDNA 1110020M19; 23.5 11 0.00037 34.7 -1.3 54 1116-1169 16-78 (88)
156 2dj7_A Actin-binding LIM prote 23.3 44 0.0015 29.5 2.7 44 1115-1171 14-57 (80)
157 3agt_A Hemerythrin-like domain 23.1 5E+02 0.017 24.8 13.4 112 295-427 17-132 (136)
158 1yk4_A Rubredoxin, RD; electro 23.1 35 0.0012 28.6 1.9 12 1057-1068 2-14 (52)
159 1wep_A PHF8; structural genomi 22.9 43 0.0015 29.8 2.6 48 1117-1165 13-65 (79)
160 1tac_A TAT protein; transcript 22.5 55 0.0019 30.1 3.1 23 1059-1092 26-48 (86)
161 3o70_A PHD finger protein 13; 22.5 16 0.00056 32.0 -0.3 47 1115-1163 18-67 (68)
162 2cu8_A Cysteine-rich protein 2 22.4 34 0.0012 29.6 1.7 45 1115-1171 8-52 (76)
163 4a17_Y RPL37A, 60S ribosomal p 22.3 23 0.00077 33.8 0.6 14 1070-1083 52-65 (103)
164 1x3h_A Leupaxin; paxillin fami 22.0 44 0.0015 29.1 2.4 40 1116-1167 15-54 (80)
165 2pv0_B DNA (cytosine-5)-methyl 21.9 29 0.00098 40.2 1.5 93 994-1124 46-147 (386)
166 3o36_A Transcription intermedi 21.9 29 0.00098 35.7 1.3 45 1116-1164 4-52 (184)
167 1iml_A CRIP, cysteine rich int 21.3 24 0.00084 30.5 0.6 38 1118-1166 2-39 (76)
168 3j20_Y 30S ribosomal protein S 21.2 28 0.00096 28.9 0.9 8 1072-1079 37-44 (50)
169 1pft_A TFIIB, PFTFIIBN; N-term 21.2 28 0.00097 28.3 0.9 15 1066-1080 18-32 (50)
170 3shb_A E3 ubiquitin-protein li 21.1 81 0.0028 28.3 3.9 71 976-1064 4-75 (77)
171 1j2o_A FLIN2, fusion of rhombo 20.9 55 0.0019 30.8 3.0 10 1156-1165 32-41 (114)
172 3i2d_A E3 SUMO-protein ligase 20.7 55 0.0019 37.7 3.4 47 1116-1165 249-299 (371)
173 3j21_i 50S ribosomal protein L 20.6 27 0.00093 32.1 0.7 8 1091-1098 53-60 (83)
174 2cuq_A Four and A half LIM dom 20.6 50 0.0017 28.7 2.4 40 1115-1166 14-53 (80)
175 2jvx_A NF-kappa-B essential mo 20.4 15 0.0005 27.3 -0.9 16 1154-1169 3-18 (28)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=100.00 E-value=2.2e-47 Score=379.48 Aligned_cols=138 Identities=45% Similarity=1.056 Sum_probs=132.0
Q ss_pred CCCCCccccccccCCCccccccccccccccCCcccCcccccccCCCCCCccccceeeccccCccccCCCCCCCCCCCCcc
Q 001028 975 GCSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLS 1054 (1184)
Q Consensus 975 ~~~~~~~~~~~~~~gC~HY~r~c~l~~~cC~~~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~q~~~~~C~~~~C~~~~ 1054 (1184)
|..|+|+|++++++||+||+|+|+|+||||+||||||+||||.++|+++|+.+++|+||.|+++||+++.|.+ | |..
T Consensus 4 ~~~~~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~~dH~l~r~~~~~vlCg~C~~~q~~~~~C~~--C-g~~ 80 (143)
T 2dkt_A 4 GSSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCED--C-STL 80 (143)
T ss_dssp CCCCCCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTSSSCCCSSSCCCEEESSSCCEECSCSBCSS--S-CCB
T ss_pred CCCCcccccccCcCCCcccCCCeeEECCCCCCccchhhhhccccccccchhccceeeecccCccccccCcCCC--C-Ccc
Confidence 5578999999999999999999999999999999999999999999999999999999999999999999988 5 999
Q ss_pred cceEecccccCccCCCCcccCCCCCccccCCCCCccccccCCCcccccccc-ccccccccCccC
Q 001028 1055 MAKYYCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKL-VDHKCREKGLET 1117 (1184)
Q Consensus 1055 ~a~Y~C~iC~l~dd~k~~yHC~~CgiCRvG~gl~~~~fHC~~C~~C~s~~l-~~H~C~e~~~~~ 1117 (1184)
|++|||+||||||++|+||||++|||||||+ |+|||||++||+|+++++ ++|+|+|++++.
T Consensus 81 f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~--~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 81 FGEYYCSICHLFDKDKRQYHCESCGICRIGP--KEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp SCSEECSSSCCEECSSSEEEETTTTEEEESC--GGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred ceeeEeceeecccCCCceecCCCCCceeccC--CcCcEECCcCCeeeccccCcCcccCccCccC
Confidence 9999999999999889999999999999996 699999999999999999 899999998753
No 2
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis}
Probab=99.47 E-value=1e-12 Score=134.90 Aligned_cols=145 Identities=14% Similarity=0.169 Sum_probs=119.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CcccHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhh--------h
Q 001028 291 SCPIDEIMLWHNAIKRELNDIAEAARKIQLSG-DFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVEL--------S 361 (1184)
Q Consensus 291 ~~pid~l~~~HkALRrEL~~L~~~a~~i~~~g-d~~~L~~L~~r~~fl~~vl~~Hs~aEDevlFPaL~~r~--------~ 361 (1184)
..||+.|...|+.||+.+..|...+..+...+ +...+..+..-+.+|...+..||..||++|||+|..+. .
T Consensus 15 ~~~i~~L~~~H~~i~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Hh~~EE~~lfP~l~~~~~~~~~~i~~ 94 (172)
T 2p0n_A 15 AEPIEMLYACHGKVRRFCGQVAMLSDYIAENGCNQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVDE 94 (172)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCGGGHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHChhHHHHhhHHHHhhCchhhHHHHH
Confidence 56999999999999999999998887764333 22334677888889999999999999999999998642 8
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhCCHHHHHHHHHhH
Q 001028 362 FAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQS 441 (1184)
Q Consensus 362 me~EH~~ie~l~e~l~~ll~~~~~~~~~~~~~~~~~eLa~~le~L~~~L~~Hf~~EE~qvfPLl~~~fS~eEq~eL~~~~ 441 (1184)
|..||..+...++.|...+..+..+.... . .+..+..+.+.+..|+.+||+ +||++.+.+|.++|.+|+.++
T Consensus 95 l~~EH~~~~~~l~~l~~~l~~~~~~~~~~-~------~~~~l~~~~~~l~~Hi~~EE~-lfP~a~~~L~~~~~~~l~~~~ 166 (172)
T 2p0n_A 95 LLRQHIGLHDNWAAVSAEFAKLEADNAYV-P------DEEAFKRFVAGYDVHLAIEEP-LFDMGNTFIPKEKLTEIGEIM 166 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCC-C------CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCc-c------cHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCHHHHHHHHHHH
Confidence 89999999999999999887776443211 1 125567778899999999999 999999999999999999876
Q ss_pred hh
Q 001028 442 LC 443 (1184)
Q Consensus 442 l~ 443 (1184)
..
T Consensus 167 ~~ 168 (172)
T 2p0n_A 167 AA 168 (172)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 3
>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, PROT structure initiative; HET: MSE; 1.41A {Neisseria meningitidis}
Probab=99.45 E-value=1.1e-12 Score=134.82 Aligned_cols=149 Identities=13% Similarity=0.085 Sum_probs=122.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHHHHHhhccccccchhhHHHhh---hHHHHH
Q 001028 41 KSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRV---KNIART 117 (1184)
Q Consensus 41 ~~Pi~~~~~~HkAlR~el~~l~~~~~~~~~~~~d~~~~~~l~~r~~~L~~~~~~H~~aEDevI~PaL~~Rv---~~v~~~ 117 (1184)
+.||+++.--|+.+|+.|..|..++..+.....+......+.+-+++|...++.||..|++++||+|..+. .+++..
T Consensus 15 ~~~i~~L~~~H~~i~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Hh~~EE~~lfP~l~~~~~~~~~~i~~ 94 (172)
T 2p0n_A 15 AEPIEMLYACHGKVRRFCGQVAMLSDYIAENGCNQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVDE 94 (172)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCGGGHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHChhHHHHhhHHHHhhCchhhHHHHH
Confidence 34999999999999999999988887765411233344677778888999999999999999999998765 467899
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhhcCch--hHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhCCHHHHHHHHHHHhh
Q 001028 118 YSLEHEGESVLFDQLFELLNSSMRNEE--SYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLC 194 (1184)
Q Consensus 118 ~~~EH~~~~~lf~~l~~~l~~~~~~~~--~~~~eLa~~l~~l~~~l~qHm~~EE~~v~PLl~~~fS~~E~a~L~~~~i~ 194 (1184)
|..||..+..+++.|...+..+..+.. .. +..+..+...+.+|+++||. +||.+.+.+|.++|.+|+.++.+
T Consensus 95 l~~EH~~~~~~l~~l~~~l~~~~~~~~~~~~----~~~l~~~~~~l~~Hi~~EE~-lfP~a~~~L~~~~~~~l~~~~~~ 168 (172)
T 2p0n_A 95 LLRQHIGLHDNWAAVSAEFAKLEADNAYVPD----EEAFKRFVAGYDVHLAIEEP-LFDMGNTFIPKEKLTEIGEIMAA 168 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCCCC----HHHHHHHHHHHHHHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCccc----HHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999988864422 11 14455566699999999999 99999999999999999998754
No 4
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=99.23 E-value=7e-11 Score=135.32 Aligned_cols=149 Identities=15% Similarity=0.160 Sum_probs=123.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccCC----cccHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhh------
Q 001028 291 SCPIDEIMLWHNAIKRELNDIAEAARKIQLSGD----FSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVEL------ 360 (1184)
Q Consensus 291 ~~pid~l~~~HkALRrEL~~L~~~a~~i~~~gd----~~~L~~L~~r~~fl~~vl~~Hs~aEDevlFPaL~~r~------ 360 (1184)
-+|++.|...|++|++.|..|...+.++..... ...+..+.+-+.+|.++-..|+..|+++|||+|+.+.
T Consensus 8 ghpi~~l~~EH~~i~~~l~~l~~~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~l~~~H~~kEE~~LFP~le~~g~~~p~~ 87 (369)
T 3cax_A 8 GHPLKTLYQENKEIMKDAEMLNLYAKTLATTKDERMREEILGVLEEIVSSLRMVGFTHYNREEMLIFPYIERRGLTVIAT 87 (369)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHTHHHHHTTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHhhhhhHhhhhHHHHHhCCCCCCc
Confidence 569999999999999999999999999863332 2467889899999977443788889999999997552
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Q 001028 361 SFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQ 440 (1184)
Q Consensus 361 ~me~EH~~ie~l~e~l~~ll~~~~~~~~~~~~~~~~~eLa~~le~L~~~L~~Hf~~EE~qvfPLl~~~fS~eEq~eL~~~ 440 (1184)
.|..||+++..++..+..++..... . + . .+.+..+...+..+...+.+|+.+||+.|||++.+.||.++|..+..+
T Consensus 88 vM~~eHd~~r~~l~~l~~~~~~~~~-~-~-~-~~~~~~~~~~l~~~~~~l~~Hi~kEe~iLfP~a~~~ls~~dw~~i~~~ 163 (369)
T 3cax_A 88 VLWTKHDEIRAMIKQLAELLRKREE-M-P-W-EEFVEKFKAKAGEVAFALSDMVFRENNIFYPTLKALLSEGEWKAIKMQ 163 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGG-S-C-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHH
T ss_pred hHHHHhHHHHHHHHHHHHHHhcccc-c-c-h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 8999999999999999999965331 1 1 0 244677888899999999999999999999999999999999999775
Q ss_pred Hhh
Q 001028 441 SLC 443 (1184)
Q Consensus 441 ~l~ 443 (1184)
+-.
T Consensus 164 ~~e 166 (369)
T 3cax_A 164 EDE 166 (369)
T ss_dssp GGG
T ss_pred Ccc
Confidence 543
No 5
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.17 E-value=1.2e-11 Score=103.41 Aligned_cols=52 Identities=35% Similarity=0.866 Sum_probs=46.0
Q ss_pred CccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCcccc
Q 001028 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1184)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~ 1165 (1184)
..+..|+||++++..+...+..++|||.||..|+.+|+..+.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4567899999997666667888999999999999999999999999999864
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.14 E-value=2.4e-11 Score=101.63 Aligned_cols=50 Identities=32% Similarity=0.769 Sum_probs=42.5
Q ss_pred ccCcccccccccccCCCceEecC-CCCCCChhhHHHHhhcCCCCCCCCcccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALP-CGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~Lp-CGH~fH~~Ci~~wl~~~~tCPiCrk~v~ 1165 (1184)
.+..|+||++++ ..++.+..+| |||.||..|+.+|++.+.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~-~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAEL-EDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCC-CTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccc-cCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 356899999994 4455567776 9999999999999999999999999863
No 7
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.3e-11 Score=107.92 Aligned_cols=58 Identities=24% Similarity=0.610 Sum_probs=49.0
Q ss_pred ccCccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccccCcc
Q 001028 1112 EKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVS 1170 (1184)
Q Consensus 1112 e~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~m~~y 1170 (1184)
+...+..|+||+++ +.....+..+||||.||..||.+|+..+.+||+||+.+..+...
T Consensus 11 ~~~~~~~C~IC~~~-~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 11 ELNLHELCAVCLED-FKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CCCCSCBCSSSCCB-CCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred cCCCCCCCcCCCcc-cCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCccccccccc
Confidence 44557789999998 55556677889999999999999999999999999999876543
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=1.7e-11 Score=109.30 Aligned_cols=53 Identities=32% Similarity=0.706 Sum_probs=45.9
Q ss_pred CccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCcccccc
Q 001028 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1184)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~m 1167 (1184)
.....|+||+++ +.....++.+||||.||..||.+|+..+.+||+||+.+...
T Consensus 21 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCD-FESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEE-CCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcc-cCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 346789999998 55556788899999999999999999999999999998753
No 9
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=2.5e-11 Score=110.47 Aligned_cols=50 Identities=20% Similarity=0.402 Sum_probs=40.1
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCcccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~ 1165 (1184)
+..|+||++++..+...+..++|||.||.+||.+|+..+.+||+||+.+.
T Consensus 26 ~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 26 MDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp TSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred hccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 56789998884444333344469999999999999999999999999865
No 10
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.09 E-value=4.1e-11 Score=104.90 Aligned_cols=53 Identities=30% Similarity=0.763 Sum_probs=45.4
Q ss_pred cCccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccc
Q 001028 1113 KGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1184)
Q Consensus 1113 ~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~ 1166 (1184)
...+..|+||++. +.....++.+||||.||..||.+|+..+.+||+||+.+..
T Consensus 11 ~~~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSI-LEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBC-CCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCcc-ccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 3456789999998 4455668889999999999999999999999999998764
No 11
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.07 E-value=3.9e-11 Score=111.38 Aligned_cols=52 Identities=31% Similarity=0.830 Sum_probs=45.0
Q ss_pred CccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccc
Q 001028 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1184)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~ 1166 (1184)
..+..|+||+++ +.....++.+||||.||..||.+|+..+.+||+||+.+..
T Consensus 38 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSE-YVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEE-CCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChh-hcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 346789999998 4555678889999999999999999999999999998753
No 12
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.03 E-value=9.8e-11 Score=104.87 Aligned_cols=52 Identities=35% Similarity=0.851 Sum_probs=45.2
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCcccccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~m 1167 (1184)
....|+||++. +.....+..++|||.||..||.+|+..+.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 14 SGLECPVCKED-YALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSCCCTTTTSC-CCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCeeCCcc-ccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 46789999998 55556678899999999999999999999999999998753
No 13
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.02 E-value=1.2e-10 Score=111.57 Aligned_cols=54 Identities=30% Similarity=0.554 Sum_probs=42.8
Q ss_pred CccCcccccccccccCC--------------CceEecCCCCCCChhhHHHHh-----hcCCCCCCCCcccccc
Q 001028 1114 GLETNCPICCDFLFTSS--------------ATVRALPCGHFMHSDCFQAYT-----CSHYICPICSKSLGDM 1167 (1184)
Q Consensus 1114 ~~~~~CpICle~lf~s~--------------~~v~~LpCGH~fH~~Ci~~wl-----~~~~tCPiCrk~v~~m 1167 (1184)
..+.+|+||++++.... ..++.++|||.||..||.+|+ ..+.+||+||+.+...
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 34578999999964321 234578999999999999999 4578999999998654
No 14
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=98.99 E-value=4.2e-09 Score=120.62 Aligned_cols=150 Identities=23% Similarity=0.265 Sum_probs=128.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc-----chHHHHHHHHHHHHHHHHHhhccccccchhhHHHh-hhHH
Q 001028 41 KSPILIFLFFHKAIKSELDVLHRAAMAFATNLGGG-----GDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIR-VKNI 114 (1184)
Q Consensus 41 ~~Pi~~~~~~HkAlR~el~~l~~~~~~~~~~~~d~-----~~~~~l~~r~~~L~~~~~~H~~aEDevI~PaL~~R-v~~v 114 (1184)
..|+..|.-=|+.||+.|..|...+..+.. +.. ..+..+.+-+.+|..+-+.|+.-|-++|||.|+.+ ..+.
T Consensus 8 ghpi~~l~~EH~~i~~~l~~l~~~~~~i~~--~~~~~~~~~~~~~l~~~~~~l~~l~~~H~~kEE~~LFP~le~~g~~~p 85 (369)
T 3cax_A 8 GHPLKTLYQENKEIMKDAEMLNLYAKTLAT--TKDERMREEILGVLEEIVSSLRMVGFTHYNREEMLIFPYIERRGLTVI 85 (369)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHTHHHHHTTTCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchHHHHHHHHHHHHHHHHHHHhhhhhHhhhhHHHHHhCCCCC
Confidence 459999999999999999999999999887 553 57888888899997744267777777999999644 3688
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhhhcCc-hhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhCCHHHHHHHHHHH
Q 001028 115 ARTYSLEHEGESVLFDQLFELLNSSMRNE-ESYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQF 192 (1184)
Q Consensus 115 ~~~~~~EH~~~~~lf~~l~~~l~~~~~~~-~~~~~eLa~~l~~l~~~l~qHm~~EE~~v~PLl~~~fS~~E~a~L~~~~ 192 (1184)
+..|..||.++..+++.+.++++.....+ ...++.+...+.++...+.+|+++||.-+||.+.+.||.+||..+..++
T Consensus 86 ~~vM~~eHd~~r~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~Hi~kEe~iLfP~a~~~ls~~dw~~i~~~~ 164 (369)
T 3cax_A 86 ATVLWTKHDEIRAMIKQLAELLRKREEMPWEEFVEKFKAKAGEVAFALSDMVFRENNIFYPTLKALLSEGEWKAIKMQE 164 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHG
T ss_pred CchHHHHhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 99999999999999999999998865333 3446778888888888999999999999999999999999999998864
No 15
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=2.4e-10 Score=99.26 Aligned_cols=51 Identities=27% Similarity=0.618 Sum_probs=42.9
Q ss_pred ccCcccccccccccC---CCceEecCCCCCCChhhHHHHhhcCCCCCCCCcccc
Q 001028 1115 LETNCPICCDFLFTS---SATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s---~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~ 1165 (1184)
....|+||++.+... ...+..++|||.||..||.+|+..+.+||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 467899999985432 234577999999999999999999999999999875
No 16
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.93 E-value=2.9e-10 Score=99.57 Aligned_cols=53 Identities=26% Similarity=0.600 Sum_probs=44.4
Q ss_pred CccCcccccccccccC---CCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccc
Q 001028 1114 GLETNCPICCDFLFTS---SATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1184)
Q Consensus 1114 ~~~~~CpICle~lf~s---~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~ 1166 (1184)
..+..|+||++.+... ...+..++|||.||..|+.+|+..+.+||+||+.+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 3467899999986442 3445789999999999999999999999999999864
No 17
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.93 E-value=4.1e-10 Score=108.10 Aligned_cols=33 Identities=24% Similarity=0.543 Sum_probs=30.5
Q ss_pred ceEecCCCCCCChhhHHHHhhcCCCCCCCCccc
Q 001028 1132 TVRALPCGHFMHSDCFQAYTCSHYICPICSKSL 1164 (1184)
Q Consensus 1132 ~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v 1164 (1184)
.++.++|||.||..||.+|+..+.+||+||+.+
T Consensus 67 ~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 67 TVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred eEeecccCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 467789999999999999999999999999984
No 18
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.91 E-value=3.8e-10 Score=96.59 Aligned_cols=52 Identities=27% Similarity=0.617 Sum_probs=43.5
Q ss_pred ccCcccccccccccC---CCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccc
Q 001028 1115 LETNCPICCDFLFTS---SATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s---~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~ 1166 (1184)
.+..||||++.+... ...+..++|||.||..|+.+|+..+.+||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 356899999985432 3445778999999999999999999999999999864
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.90 E-value=6e-10 Score=97.04 Aligned_cols=51 Identities=25% Similarity=0.588 Sum_probs=43.6
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccccC
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMA 1168 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~m~ 1168 (1184)
.+..|+||++.+. .++..+||||.||..|+.+|+..+.+||+||+.+..+.
T Consensus 4 ~~~~C~IC~~~~~---~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 54 (68)
T 1chc_A 4 VAERCPICLEDPS---NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVV 54 (68)
T ss_dssp CCCCCSSCCSCCC---SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCEE
T ss_pred CCCCCeeCCcccc---CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhhh
Confidence 4578999999842 34678999999999999999999999999999987643
No 20
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=4.9e-10 Score=98.30 Aligned_cols=52 Identities=31% Similarity=0.605 Sum_probs=44.2
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccccCccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVSP 1171 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~m~~y~ 1171 (1184)
....|+||++.+. . +.+||||.||..|+.+|+..+.+||+||+.+......|
T Consensus 14 ~~~~C~IC~~~~~-~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 14 DEEECCICMDGRA-D----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCSSSCCSCC-S----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCeeCCcCcc-C----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 4678999999843 2 67899999999999999999999999999988665544
No 21
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=1.7e-09 Score=98.36 Aligned_cols=52 Identities=29% Similarity=0.611 Sum_probs=42.8
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcC---CCCCCCCccccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH---YICPICSKSLGD 1166 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~---~tCPiCrk~v~~ 1166 (1184)
....||||++.+.......+.++|||.||..|+.+|+..+ .+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3568999999855444346778999999999999999875 899999998754
No 22
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=3e-09 Score=94.06 Aligned_cols=50 Identities=20% Similarity=0.415 Sum_probs=42.0
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCcccccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~m 1167 (1184)
.+..||||++.+. +++...+|||.||..||.+|+..+.+||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 14 PYILCSICKGYLI---DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GGGSCTTTSSCCS---SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCChHHH---CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 3568999999843 2455569999999999999999899999999998753
No 23
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.78 E-value=7.4e-10 Score=108.12 Aligned_cols=50 Identities=24% Similarity=0.584 Sum_probs=0.9
Q ss_pred ccCcccccccccccC--------------CCceEecCCCCCCChhhHHHHhhcCCCCCCCCccc
Q 001028 1115 LETNCPICCDFLFTS--------------SATVRALPCGHFMHSDCFQAYTCSHYICPICSKSL 1164 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s--------------~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v 1164 (1184)
.+.+|+||++++... ...+..++|||.||..||.+|+..+.+||+||+.+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp CC--------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCee
Confidence 357899999885321 12344569999999999999999999999999984
No 24
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=1.8e-09 Score=95.30 Aligned_cols=49 Identities=20% Similarity=0.486 Sum_probs=41.2
Q ss_pred CccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccc
Q 001028 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1184)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~ 1166 (1184)
..+..|+||++.+. ..+.+||||.||..||..|+..+.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~----~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCV----HPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCS----SEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccC----CCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34578999998842 23567999999999999999999999999999763
No 25
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.73 E-value=4.9e-09 Score=90.82 Aligned_cols=51 Identities=24% Similarity=0.509 Sum_probs=40.5
Q ss_pred cCccccccc-ccccCCCceEecCCCCCCChhhHHHHhh-cCCCCCCCCccccc
Q 001028 1116 ETNCPICCD-FLFTSSATVRALPCGHFMHSDCFQAYTC-SHYICPICSKSLGD 1166 (1184)
Q Consensus 1116 ~~~CpICle-~lf~s~~~v~~LpCGH~fH~~Ci~~wl~-~~~tCPiCrk~v~~ 1166 (1184)
+..||||++ .+.........++|||.||..|+.+|+. ...+||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 567999999 6444434445689999999999999964 45789999999864
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.69 E-value=4.8e-09 Score=104.37 Aligned_cols=47 Identities=30% Similarity=0.753 Sum_probs=40.3
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~ 1166 (1184)
+..||||++.+. + .+.+||||.||..||..|+..+.+||+||+.+..
T Consensus 53 ~~~C~iC~~~~~---~-~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFI---E-AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCS---S-EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccC---C-ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 357999999843 2 3568999999999999999999999999999864
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1.2e-08 Score=88.54 Aligned_cols=49 Identities=24% Similarity=0.473 Sum_probs=39.7
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHh-hcCCCCCCCCcccccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYT-CSHYICPICSKSLGDM 1167 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl-~~~~tCPiCrk~v~~m 1167 (1184)
.+..||||++.+. +++. ++|||.||..|+.+|+ ..+.+||+||+.+..-
T Consensus 14 ~~~~C~IC~~~~~---~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 14 DKYKCEKCHLVLC---SPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCEECTTTCCEES---SCCC-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred cCCCCCCCChHhc---CeeE-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 3567999998843 2333 7999999999999999 5678999999998653
No 28
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=9e-09 Score=92.94 Aligned_cols=47 Identities=21% Similarity=0.468 Sum_probs=40.3
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCcccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~ 1165 (1184)
....||||++.+. ++ +.++|||.||..|+.+|+....+||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~---~p-~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQ---NP-VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCC---SE-EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhc---Ce-eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4568999999842 23 45899999999999999999999999999986
No 29
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1e-08 Score=93.62 Aligned_cols=51 Identities=25% Similarity=0.561 Sum_probs=41.0
Q ss_pred cCccCcccccccccccCCCceEecCCC-----CCCChhhHHHHhhcC--CCCCCCCcccc
Q 001028 1113 KGLETNCPICCDFLFTSSATVRALPCG-----HFMHSDCFQAYTCSH--YICPICSKSLG 1165 (1184)
Q Consensus 1113 ~~~~~~CpICle~lf~s~~~v~~LpCG-----H~fH~~Ci~~wl~~~--~tCPiCrk~v~ 1165 (1184)
...+..|+||+++ +.....+ ++||+ |+||..||++|+..+ .+||+||..+.
T Consensus 12 ~~~~~~C~IC~~~-~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 12 PSSQDICRICHCE-GDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CTTSCCCSSSCCC-CCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCeEcCcc-ccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 3456789999988 4444444 68996 999999999999765 58999999875
No 30
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.66 E-value=1.3e-08 Score=90.66 Aligned_cols=51 Identities=24% Similarity=0.524 Sum_probs=40.3
Q ss_pred ccCcccccccccccCCCceEecC-CCCCCChhhHHHHhhcC--CCCCCCCccccccCc
Q 001028 1115 LETNCPICCDFLFTSSATVRALP-CGHFMHSDCFQAYTCSH--YICPICSKSLGDMAV 1169 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~Lp-CGH~fH~~Ci~~wl~~~--~tCPiCrk~v~~m~~ 1169 (1184)
.+..||||++.+. ++ +.+| |||.||..||..|+..+ .+||+||+.+.....
T Consensus 14 ~~~~C~IC~~~~~---~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 14 DELLCLICKDIMT---DA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp GGGSCSSSCCCCT---TC-EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred CCCCCcCCChHHh---CC-eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 3568999998743 23 4488 99999999999999765 799999998654433
No 31
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.64 E-value=2.1e-08 Score=91.04 Aligned_cols=59 Identities=19% Similarity=0.432 Sum_probs=45.0
Q ss_pred ccCcccccccccccCCCceEec--CCCCCCChhhHHHHhh-cCCCCCCCCccccccCccccccc
Q 001028 1115 LETNCPICCDFLFTSSATVRAL--PCGHFMHSDCFQAYTC-SHYICPICSKSLGDMAVSPLFRT 1175 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~L--pCGH~fH~~Ci~~wl~-~~~tCPiCrk~v~~m~~y~~~~~ 1175 (1184)
.+..||||++++... ....+ +|||.|+..|+..++. .++.||+||+.+......|+..+
T Consensus 10 ~~~~CpICle~~~~~--d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~~~ 71 (78)
T 1e4u_A 10 DPVECPLCMEPLEID--DINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPLS 71 (78)
T ss_dssp CCCBCTTTCCBCCTT--TTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCSCC
T ss_pred cCCcCCccCccCccc--cccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhccCC
Confidence 457899999985322 23344 5999999999999874 46899999999988777765543
No 32
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.63 E-value=9.4e-09 Score=99.81 Aligned_cols=52 Identities=27% Similarity=0.609 Sum_probs=44.0
Q ss_pred ccCcccccccccccC---CCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccc
Q 001028 1115 LETNCPICCDFLFTS---SATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s---~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~ 1166 (1184)
.+..||||++.+... ...++.++|||.||..||.+|+..+.+||+||+.+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 457899999985432 3445789999999999999999999999999999864
No 33
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=1.6e-08 Score=88.99 Aligned_cols=49 Identities=31% Similarity=0.706 Sum_probs=39.6
Q ss_pred CccCcccccccccccCCCceEecCCCCCCChhhHHHHhh---cCCCCCCCCccccc
Q 001028 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC---SHYICPICSKSLGD 1166 (1184)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~---~~~tCPiCrk~v~~ 1166 (1184)
.....||||++.+. ..+.++|||.||..|+..|+. .+.+||+||+.+..
T Consensus 18 ~~~~~C~IC~~~~~----~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQ----KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCS----SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccC----CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 34678999999743 245569999999999999996 46789999998753
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.58 E-value=1.7e-08 Score=94.47 Aligned_cols=48 Identities=21% Similarity=0.559 Sum_probs=40.9
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~ 1166 (1184)
+..||||++.+. +++..++|||.||..|+..|+..+.+||+||+.+..
T Consensus 22 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFN---IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhC---CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 468999999843 355556999999999999999999999999999874
No 35
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.55 E-value=2.3e-08 Score=94.28 Aligned_cols=48 Identities=21% Similarity=0.432 Sum_probs=40.7
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhhcC-CCCCCCCccccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH-YICPICSKSLGD 1166 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~-~tCPiCrk~v~~ 1166 (1184)
+..||||++.+. +++..++|||.||..||..|+... .+||+||+.+..
T Consensus 22 ~~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCcccc---CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 568999999843 355559999999999999999877 799999999853
No 36
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=5.7e-08 Score=87.31 Aligned_cols=48 Identities=33% Similarity=0.716 Sum_probs=40.0
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhc------CCCCCCCCccccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS------HYICPICSKSLGD 1166 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~------~~tCPiCrk~v~~ 1166 (1184)
....||||++.+. . .+.+||||.||..|+..|+.. ..+||+||+.+..
T Consensus 18 ~~~~C~IC~~~~~-~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLT-Q---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCS-S---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccC-C---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4578999999843 2 245799999999999999976 7899999999874
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.52 E-value=3.5e-08 Score=95.78 Aligned_cols=53 Identities=26% Similarity=0.600 Sum_probs=43.8
Q ss_pred CccCcccccccccccC---CCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccc
Q 001028 1114 GLETNCPICCDFLFTS---SATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1184)
Q Consensus 1114 ~~~~~CpICle~lf~s---~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~ 1166 (1184)
.....|+||++.+... ....+.++|||.||..|+++|+..+.+||+||+++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 3467899999985432 2344778999999999999999999999999999864
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.51 E-value=4.3e-08 Score=93.29 Aligned_cols=49 Identities=20% Similarity=0.572 Sum_probs=41.9
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~ 1166 (1184)
.+..||||++.+. +++..++|||.||..||..|+..+.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFI---DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHh---CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 3578999998743 356656999999999999999999999999999875
No 39
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.51 E-value=4.4e-08 Score=87.54 Aligned_cols=48 Identities=19% Similarity=0.353 Sum_probs=40.0
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhc-CCCCCCCCccccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLGD 1166 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~-~~tCPiCrk~v~~ 1166 (1184)
.+..||||++.+. ++ +.++|||.|+..||.+|+.. +.+||+||+.+..
T Consensus 7 ~~~~C~IC~~~~~---~P-v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMK---DP-VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCS---SE-EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCcccccc---CC-EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 4678999998743 23 44699999999999999987 7899999999864
No 40
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.51 E-value=3.4e-08 Score=88.18 Aligned_cols=48 Identities=31% Similarity=0.703 Sum_probs=39.4
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhc-------CCCCCCCCccccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-------HYICPICSKSLGD 1166 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~-------~~tCPiCrk~v~~ 1166 (1184)
.+..||||++.+. . + +.+||||.||..|+..|+.. ..+||+||+.+..
T Consensus 11 ~~~~C~IC~~~~~-~--p-~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLT-E--P-LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECS-S--C-CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccC-C--e-eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 3568999999843 2 2 34799999999999999976 6789999999864
No 41
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.50 E-value=5.7e-08 Score=87.35 Aligned_cols=48 Identities=27% Similarity=0.551 Sum_probs=39.7
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhc------CCCCCCCCccccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS------HYICPICSKSLGD 1166 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~------~~tCPiCrk~v~~ 1166 (1184)
.+..||||++.+. . + +.++|||.||..|+..|+.. ..+||+||+.+..
T Consensus 18 ~~~~C~IC~~~~~-~--p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLK-E--P-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCS-S--C-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhC-c--c-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 3568999999843 2 3 36899999999999999976 7889999999763
No 42
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=5.7e-08 Score=81.63 Aligned_cols=42 Identities=26% Similarity=0.848 Sum_probs=34.2
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHh---hcCCCCCCC
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYT---CSHYICPIC 1160 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl---~~~~tCPiC 1160 (1184)
....|+||++.+.. + +.++|||.||..||.+|+ ..+.+||+|
T Consensus 14 ~~~~C~IC~~~~~~---p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE---P-VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS---C-CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc---c-EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45689999998432 2 458999999999999994 467899998
No 43
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=6.2e-08 Score=83.23 Aligned_cols=42 Identities=33% Similarity=0.798 Sum_probs=34.5
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhh---cCCCCCCC
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC---SHYICPIC 1160 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~---~~~tCPiC 1160 (1184)
.+..||||++.+. + .+.++|||.||..||.+|+. ...+||+|
T Consensus 19 ~~~~C~IC~~~~~---~-p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQ---K-PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCS---S-CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhC---C-eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4678999999743 2 34569999999999999997 56789998
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.48 E-value=4.5e-08 Score=99.90 Aligned_cols=48 Identities=38% Similarity=0.668 Sum_probs=40.5
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhhc-CCCCCCCCccccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLGD 1166 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~-~~tCPiCrk~v~~ 1166 (1184)
+..||||++.+. +++..++|||.||..||..|+.. +.+||+||+.+..
T Consensus 54 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLK---NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChHhh---CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 458999999843 35666799999999999999987 7899999999853
No 45
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.44 E-value=7.1e-08 Score=93.97 Aligned_cols=47 Identities=26% Similarity=0.626 Sum_probs=38.8
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhhc-CCCCCCCCccccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLGD 1166 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~-~~tCPiCrk~v~~ 1166 (1184)
+..||||++.+. + .+.+||||.||..||..|+.. ..+||+||+.+..
T Consensus 52 ~~~C~IC~~~~~---~-p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVF---R-PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCS---S-EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHc---C-cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 467999999843 2 345799999999999999975 4599999999865
No 46
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.40 E-value=1.7e-07 Score=89.03 Aligned_cols=47 Identities=21% Similarity=0.624 Sum_probs=38.3
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhhcC---CCCCCCCccccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH---YICPICSKSLGD 1166 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~---~tCPiCrk~v~~ 1166 (1184)
...||||++.+. .+ +.+||||.||..|+..|+..+ .+||+||..+..
T Consensus 21 ~~~C~IC~~~~~---~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIK---EP-VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCS---SC-CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhc---Ce-EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 468999999742 23 347999999999999999765 489999998864
No 47
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.36 E-value=1.5e-07 Score=86.72 Aligned_cols=47 Identities=26% Similarity=0.588 Sum_probs=38.0
Q ss_pred ccCcccccccccccCCCceEecC-CCCCCChhhHHHHhhc--CCCCCCCCcccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALP-CGHFMHSDCFQAYTCS--HYICPICSKSLG 1165 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~Lp-CGH~fH~~Ci~~wl~~--~~tCPiCrk~v~ 1165 (1184)
.+..||||++.+. ++ +.+| |||.|+..||..|+.. ..+||+||+.+.
T Consensus 12 ~~~~C~IC~~~~~---~p-~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMT---DA-VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECS---SC-EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhc---Cc-eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3568999998743 23 4578 9999999999999864 469999999974
No 48
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.36 E-value=8.1e-08 Score=92.26 Aligned_cols=47 Identities=32% Similarity=0.807 Sum_probs=39.0
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhhc-CCCCCCCCccccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLGD 1166 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~-~~tCPiCrk~v~~ 1166 (1184)
+..||||++.+.. .+.++|||.||..||..|+.. +.+||+||+.+..
T Consensus 15 ~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVE----PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSS----CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCc----eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 5679999988532 345699999999999999976 6799999999864
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.32 E-value=1.5e-07 Score=82.08 Aligned_cols=52 Identities=17% Similarity=0.344 Sum_probs=41.3
Q ss_pred ccCccCcccccccccccCCCceEec--CCCCC-CChhhHHHHhhcCCCCCCCCcccccc
Q 001028 1112 EKGLETNCPICCDFLFTSSATVRAL--PCGHF-MHSDCFQAYTCSHYICPICSKSLGDM 1167 (1184)
Q Consensus 1112 e~~~~~~CpICle~lf~s~~~v~~L--pCGH~-fH~~Ci~~wl~~~~tCPiCrk~v~~m 1167 (1184)
+...+..|+||++. + .+ ...+ ||||. |...|+..|...+.+||+||+.+...
T Consensus 4 ~~~~~~~C~IC~~~-~--~~-~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 58 (64)
T 2vje_A 4 PLNAIEPCVICQGR-P--KN-GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMI 58 (64)
T ss_dssp -CGGGSCCTTTSSS-C--SC-EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEE
T ss_pred CCCCcCCCCcCCCC-C--CC-EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhce
Confidence 34467789999987 2 22 3444 99999 78999999999889999999998754
No 50
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.31 E-value=2.6e-07 Score=83.33 Aligned_cols=47 Identities=30% Similarity=0.584 Sum_probs=38.5
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhhcC--CCCCCCCcccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH--YICPICSKSLG 1165 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~--~tCPiCrk~v~ 1165 (1184)
..+|+||.+.+. .. ..-..|+|.||..||.+|++.+ .+||+||..+.
T Consensus 15 i~~C~IC~~~i~-~g--~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLI-QG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCS-SS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHcc-cC--CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 578999998754 32 3334999999999999999887 89999998864
No 51
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.27 E-value=2.5e-07 Score=93.64 Aligned_cols=47 Identities=26% Similarity=0.657 Sum_probs=38.9
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhhcC-CCCCCCCccccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH-YICPICSKSLGD 1166 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~-~tCPiCrk~v~~ 1166 (1184)
...||||++.+. ++ +.+||||.||..||..|+... .+||+||..+..
T Consensus 78 ~~~C~IC~~~~~---~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQELVY---QP-VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSBCS---SE-EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCEeecCChhhc---CC-EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 468999998743 23 348999999999999999865 489999999875
No 52
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.27 E-value=2.1e-07 Score=90.12 Aligned_cols=48 Identities=27% Similarity=0.508 Sum_probs=39.4
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCC-CCCCCCccccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHY-ICPICSKSLGD 1166 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~-tCPiCrk~v~~ 1166 (1184)
.+..||||++.+. ++ +.++|||.|+..||.+|+..+. +||+||+.+..
T Consensus 17 ~~~~C~IC~~~~~---~p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALR---EA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCS---SE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCcCChhhc---Ce-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 3568999998743 23 4579999999999999997654 99999999875
No 53
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.22 E-value=3.9e-07 Score=87.62 Aligned_cols=47 Identities=23% Similarity=0.459 Sum_probs=39.5
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhhc-CCCCCCCCccccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLGD 1166 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~-~~tCPiCrk~v~~ 1166 (1184)
+..||||++.+. +++ .++|||.||..||..|+.. +.+||+||+.+..
T Consensus 23 ~~~C~IC~~~~~---~p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILA---DPV-ETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCS---SEE-ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhc---CcE-EcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 568999998742 234 4899999999999999986 7899999999875
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.21 E-value=3.2e-07 Score=79.71 Aligned_cols=53 Identities=21% Similarity=0.345 Sum_probs=41.4
Q ss_pred CccCcccccccccccCCCce-EecCCCCC-CChhhHHHHhhcCCCCCCCCccccccCc
Q 001028 1114 GLETNCPICCDFLFTSSATV-RALPCGHF-MHSDCFQAYTCSHYICPICSKSLGDMAV 1169 (1184)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v-~~LpCGH~-fH~~Ci~~wl~~~~tCPiCrk~v~~m~~ 1169 (1184)
.....|+||++.. .+.+ ..+||||. |...|+..|...+.+||+||+.+.....
T Consensus 5 ~~~~~C~IC~~~~---~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~ 59 (63)
T 2vje_B 5 NLLKPCSLCEKRP---RDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIK 59 (63)
T ss_dssp GGGSBCTTTSSSB---SCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEE
T ss_pred CcCCCCcccCCcC---CCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEE
Confidence 3467899999862 2222 23499998 9999999999888999999999875443
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.17 E-value=4.8e-07 Score=80.85 Aligned_cols=45 Identities=31% Similarity=0.669 Sum_probs=37.6
Q ss_pred ccCcccccccccccCCCceEecCCCCC-CChhhHHHHhhcCCCCCCCCcccccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQAYTCSHYICPICSKSLGDM 1167 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~-fH~~Ci~~wl~~~~tCPiCrk~v~~m 1167 (1184)
.+..|+||++.+. ....+||||. |+..|+..| .+||+||+.+...
T Consensus 23 ~~~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRNI----AIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSBC----CEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCCC----CEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence 3568999998732 3567899999 999999998 8999999998754
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.14 E-value=8.8e-07 Score=102.08 Aligned_cols=48 Identities=27% Similarity=0.653 Sum_probs=41.0
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhh-cCCCCCCCCccccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC-SHYICPICSKSLGD 1166 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~-~~~tCPiCrk~v~~ 1166 (1184)
....|+||++.+ ...+.+||||.||..|+..|+. .+.+||+||+.+..
T Consensus 331 ~~~~C~ICle~~----~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAEND----KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSB----CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCC----CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 346899999873 2356789999999999999998 78899999999865
No 57
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.12 E-value=8.7e-07 Score=74.97 Aligned_cols=45 Identities=29% Similarity=0.511 Sum_probs=36.4
Q ss_pred CccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCcccc
Q 001028 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1184)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~ 1165 (1184)
.....|+||++.+. . .+.+||||.|+..|+..| ..+||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~~-~---p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAK-C---PKLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCB-C---CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccC-C---eEEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 44678999998743 2 356899999999999884 678999999875
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.08 E-value=1e-06 Score=85.06 Aligned_cols=45 Identities=24% Similarity=0.492 Sum_probs=37.3
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCcccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~ 1165 (1184)
+..||||++.+. +++...+|||.|+..||..|+. .+||+||+.+.
T Consensus 22 ~~~C~IC~~~~~---~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILR---EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCS---SCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCCChHhh---CccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 578999998743 3444349999999999999987 88999999984
No 59
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.08 E-value=1.2e-06 Score=80.58 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=40.1
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~ 1166 (1184)
.+..||||++.|. ++ +.++|||.|.+.||.+|+..+.+||+||..+..
T Consensus 13 ~~~~CpI~~~~m~---dP-V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMT---DP-VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCS---SE-EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hheECcccCchhc---CC-eECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 3678999998743 23 457899999999999999989999999998753
No 60
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.04 E-value=1.4e-06 Score=82.69 Aligned_cols=48 Identities=17% Similarity=0.184 Sum_probs=40.2
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~ 1166 (1184)
.+..||||++.|. ++ +.+||||.|.+.||..|+..+.+||+||..+..
T Consensus 28 ~~~~CpI~~~~m~---dP-V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 28 DEFRDPLMDTLMT---DP-VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp TTTBCTTTCSBCS---SE-EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred HhhCCcCccCccc---CC-eECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 3678999998743 34 457899999999999999989999999998764
No 61
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.00 E-value=2.2e-06 Score=80.95 Aligned_cols=48 Identities=19% Similarity=0.129 Sum_probs=40.3
Q ss_pred ccCcccccccccccCCCceEecCCC-CCCChhhHHHHhhcCCCCCCCCccccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCG-HFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCG-H~fH~~Ci~~wl~~~~tCPiCrk~v~~ 1166 (1184)
.+..||||++.|. ++| .++|| |.|.+.||.+|+..+.+||+||..+..
T Consensus 21 ~~~~CpI~~~~m~---dPV-~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMC---DPV-VLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCS---SEE-ECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred HhcCCcCcccccc---CCe-ECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 3678999998743 344 58999 999999999999989999999998764
No 62
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.98 E-value=1.6e-06 Score=97.63 Aligned_cols=52 Identities=21% Similarity=0.505 Sum_probs=39.4
Q ss_pred CccCcccccccccccCCC-c---eEecCCCCCCChhhHHHHhhcC-----------CCCCCCCcccc
Q 001028 1114 GLETNCPICCDFLFTSSA-T---VRALPCGHFMHSDCFQAYTCSH-----------YICPICSKSLG 1165 (1184)
Q Consensus 1114 ~~~~~CpICle~lf~s~~-~---v~~LpCGH~fH~~Ci~~wl~~~-----------~tCPiCrk~v~ 1165 (1184)
....+|+||++.+..++. + ....+|||.||..|+.+|+++. .+||.||+.+.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 456789999998554222 1 1235899999999999999652 57999999764
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=3.4e-06 Score=75.32 Aligned_cols=45 Identities=31% Similarity=0.670 Sum_probs=36.1
Q ss_pred cCcccccccccccCCCceEecCCCCC-CChhhHHHHhhcCCCCCCCCccccccC
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQAYTCSHYICPICSKSLGDMA 1168 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~-fH~~Ci~~wl~~~~tCPiCrk~v~~m~ 1168 (1184)
+..|+||++.+ . ....+||||. |+..|+.. ..+||+||+.+....
T Consensus 25 ~~~C~IC~~~~-~---~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~~ 70 (75)
T 2ecg_A 25 EKLCKICMDRN-I---AIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFKQ 70 (75)
T ss_dssp HHSCSSSCSSC-C---CBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCCC
T ss_pred CCCCCcCCCCC-C---CEEEecCCCHHHHHHHhhC----CCCCccCCceecCcE
Confidence 46799999873 2 3556899999 99999964 478999999987643
No 64
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.96 E-value=1.1e-06 Score=88.04 Aligned_cols=46 Identities=24% Similarity=0.415 Sum_probs=37.7
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcC-CCCCCCCccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH-YICPICSKSL 1164 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~-~tCPiCrk~v 1164 (1184)
.+..||||++.+. ++ +.++|||.|+..||.+|+... .+||+||+.+
T Consensus 30 ~~~~C~IC~~~~~---~p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLR---RP-FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCS---SE-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCcCCCCCChhhc---Cc-EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 3568999998743 23 447999999999999999765 4899999975
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=5.6e-06 Score=73.09 Aligned_cols=50 Identities=20% Similarity=0.502 Sum_probs=39.8
Q ss_pred CccCcccccccccccCCCceEecCCCCC-CChhhHHHHhhcCCCCCCCCccccccCccc
Q 001028 1114 GLETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQAYTCSHYICPICSKSLGDMAVSP 1171 (1184)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~-fH~~Ci~~wl~~~~tCPiCrk~v~~m~~y~ 1171 (1184)
.....|+||++. . ..+..+||||. |...|+.. ..+||+||..+......|
T Consensus 13 ~~~~~C~IC~~~-~---~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~~~i~ 63 (68)
T 2ea5_A 13 ENSKDCVVCQNG-T---VNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQESFALS 63 (68)
T ss_dssp CCSSCCSSSSSS-C---CCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCEECCC
T ss_pred CCCCCCCCcCcC-C---CCEEEECCCChhhhHHHHhc----CCCCCCCCcchhceEEee
Confidence 346789999986 2 34778999999 99999984 479999999998755444
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.90 E-value=2.9e-06 Score=76.98 Aligned_cols=54 Identities=26% Similarity=0.557 Sum_probs=41.5
Q ss_pred cCcccccccccccCCCceEecCCCCC-CChhhHHHHhhcCCCCCCCCccccccCccccccccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQAYTCSHYICPICSKSLGDMAVSPLFRTTS 1177 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~-fH~~Ci~~wl~~~~tCPiCrk~v~~m~~y~~~~~~~ 1177 (1184)
+..|+||++.. ..+..+||||. |...|+..| ..||+||..+......|..-++.
T Consensus 18 ~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~p~~~~ 72 (79)
T 2yho_A 18 AMLCMVCCEEE----INSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHVQHVYLPTHTS 72 (79)
T ss_dssp HTBCTTTSSSB----CCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEEEECBCTTCCC
T ss_pred CCEeEEeCccc----CcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCeEEEEeCcchh
Confidence 46899999872 24677899999 999999887 39999999998765544433333
No 67
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.81 E-value=1e-05 Score=69.91 Aligned_cols=49 Identities=22% Similarity=0.473 Sum_probs=37.5
Q ss_pred ccCccCcccccccccccCCCceEecCCC--C---CCChhhHHHHhhc--CCCCCCCCccc
Q 001028 1112 EKGLETNCPICCDFLFTSSATVRALPCG--H---FMHSDCFQAYTCS--HYICPICSKSL 1164 (1184)
Q Consensus 1112 e~~~~~~CpICle~lf~s~~~v~~LpCG--H---~fH~~Ci~~wl~~--~~tCPiCrk~v 1164 (1184)
|......|.||+++ . +.+. .+||. | +||..|+.+|+.. +.+||+|+..+
T Consensus 2 e~~~~~~CrIC~~~-~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 2 EDEDVPVCWICNEE-L--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp TTCSCCEETTTTEE-C--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCCEeEEeecC-C--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence 34566789999987 2 2333 58865 4 9999999999864 68899999875
No 68
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.76 E-value=6.9e-06 Score=84.05 Aligned_cols=48 Identities=29% Similarity=0.558 Sum_probs=39.2
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcC-CCCCCCCccccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH-YICPICSKSLGD 1166 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~-~tCPiCrk~v~~ 1166 (1184)
....||||++.+. +++ .++|||.|+..||.+|+... .+||+||+.+..
T Consensus 17 ~~~~C~IC~~~~~---~pv-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMALR---EAV-QTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSBCS---SEE-ECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCChhhc---CcE-ECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 3568999999843 244 47999999999999999754 599999999875
No 69
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.71 E-value=1.3e-05 Score=87.09 Aligned_cols=48 Identities=10% Similarity=0.050 Sum_probs=38.4
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhc-CCCCCCCCccccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS-HYICPICSKSLGD 1166 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~-~~tCPiCrk~v~~ 1166 (1184)
....||||++.+. ++| .+||||.|.+.||..|+.. +.+||+||..+..
T Consensus 207 ~~~~c~i~~~~~~---dPv-~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMR---EPC-ITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCS---SEE-ECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhc---CCe-ECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 3567999998742 344 5889999999999999975 4559999998853
No 70
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.65 E-value=1.4e-05 Score=74.11 Aligned_cols=48 Identities=19% Similarity=0.498 Sum_probs=37.0
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhc--------CCCCCC--CCcc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS--------HYICPI--CSKS 1163 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~--------~~tCPi--Crk~ 1163 (1184)
....|+||+++ +.....+...+|||.|...|+..|+.. ..+||. |+..
T Consensus 4 ~~~~C~IC~~~-~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGE-YPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCC-CBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcc-cccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45689999998 444333344589999999999999752 357999 9998
No 71
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.55 E-value=2.9e-05 Score=72.43 Aligned_cols=46 Identities=28% Similarity=0.528 Sum_probs=36.3
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcC------CCCCC--CCcc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH------YICPI--CSKS 1163 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~------~tCPi--Crk~ 1163 (1184)
.+..||||++. +. ++|..-.|||.|.+.||.+|+..+ .+||+ |++.
T Consensus 6 ~~~~CPI~~~~-~~--dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEE-MK--KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSB-CS--SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCch-hc--CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 45679999987 43 355543599999999999999653 69999 9966
No 72
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.42 E-value=4.2e-05 Score=83.83 Aligned_cols=48 Identities=31% Similarity=0.646 Sum_probs=40.5
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcC--CCCCC--CCcccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH--YICPI--CSKSLG 1165 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~--~tCPi--Crk~v~ 1165 (1184)
.+..||||++.+ .++|+...|||.|.+.||.+|+..+ .+||+ |++.+.
T Consensus 180 ~el~CPIcl~~f---~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPY---EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBC---SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcc---cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 467899999984 4578878999999999999999754 57999 999764
No 73
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.41 E-value=4.8e-05 Score=79.37 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=37.7
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhhcC-CCCCCCCccccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH-YICPICSKSLGD 1166 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~-~tCPiCrk~v~~ 1166 (1184)
+..||||++.|. ++| .+||||.|-+.||..|+..+ .+||+|+..+..
T Consensus 106 ~f~CPI~~elm~---DPV-~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 106 YLCGKISFELMR---EPC-ITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGBCTTTCSBCS---SEE-ECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred hhcccCccccCC---CCe-ECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 467999998743 345 45999999999999999764 479999998753
No 74
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.40 E-value=3.7e-05 Score=87.71 Aligned_cols=44 Identities=32% Similarity=0.806 Sum_probs=37.0
Q ss_pred cCcccccccccccCCCceEecCCCCC-CChhhHHHHhhcCCCCCCCCcccccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHF-MHSDCFQAYTCSHYICPICSKSLGDM 1167 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~-fH~~Ci~~wl~~~~tCPiCrk~v~~m 1167 (1184)
+..|+||++.+. ....+||||. |+..|+..| ..||+||..+...
T Consensus 295 ~~~C~IC~~~~~----~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 295 ERTCKVCMDKEV----SVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGT 339 (345)
T ss_dssp TCBCTTTSSSBC----CEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEE
T ss_pred CCCCCccCCcCC----ceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCe
Confidence 578999998732 3567899999 999999988 7899999998753
No 75
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.16 E-value=0.00011 Score=63.52 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=39.8
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~ 1166 (1184)
...||||++.|. ++|...+|||+|-+.||.+|+..+.+||++++.+..
T Consensus 3 ~~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 457999998743 455555999999999999999888899999998753
No 76
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.58 E-value=0.00074 Score=63.85 Aligned_cols=50 Identities=24% Similarity=0.459 Sum_probs=40.5
Q ss_pred cccccccccccCCCceEecCCCCCCChhhHHHHhh-cCCCCCCCCccccccCcc
Q 001028 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC-SHYICPICSKSLGDMAVS 1170 (1184)
Q Consensus 1118 ~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~-~~~tCPiCrk~v~~m~~y 1170 (1184)
-|++|--++. .-.+.+||+|+|..+|+..|.+ ...+||+|+..|.+.+..
T Consensus 3 fC~~C~~Pi~---iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 3 FCDKCGLPIK---VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp BCTTTCSBCS---EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred ecCccCCCeE---EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 4888876632 2457789999999999999974 568999999999887654
No 77
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A
Probab=96.47 E-value=0.016 Score=57.36 Aligned_cols=146 Identities=23% Similarity=0.282 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHHHHHhhccccccchhhHHHhhhHHHHHHHhhhh
Q 001028 44 ILIFLFFHKAIKSELDVLHRAAMAFATNLGGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTYSLEHE 123 (1184)
Q Consensus 44 i~~~~~~HkAlR~el~~l~~~~~~~~~~~~d~~~~~~l~~r~~~L~~~~~~H~~aEDevI~PaL~~Rv~~v~~~~~~EH~ 123 (1184)
+|+|.+-|--+..-..+--.-+-..+- .+..+++.|..-+..--.-++.|-+-||+.|.-.|..|...|..- .-|.
T Consensus 8 vdvF~~PH~RMKqlvg~y~ekLS~tnF--s~n~d~~~lL~sl~~tF~EfK~HEqIENe~I~~~LqqRs~tV~nv--Hsdn 83 (160)
T 3u9j_A 8 VDVFTAPHWRMKQLVGLYCDKLSKTNF--SNNNDFRALLQSLYATFKEFKMHEQIENEYIIGLLQQRSQTIYNV--HSDN 83 (160)
T ss_dssp GCSSHHHHHHHHHHHHHHHHHHHHCCT--TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCCSSC--SCCT
T ss_pred cceeeccHHHHHHHHHHHHHHHhhccC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecc--cCcc
Confidence 567777776555544443333333333 666777877777777777789999999999999999984222111 1123
Q ss_pred hHHHHHHHHHHHHHhhhcCc-h--hHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHhhCCHHHHHHHHHHHhh
Q 001028 124 GESVLFDQLFELLNSSMRNE-E--SYRRELASCTGALQTSISQHMSKEEEQVFPLLIEKFSFEEQASLVWQFLC 194 (1184)
Q Consensus 124 ~~~~lf~~l~~~l~~~~~~~-~--~~~~eLa~~l~~l~~~l~qHm~~EE~~v~PLl~~~fS~~E~a~L~~~~i~ 194 (1184)
...+.++-+..++..- .+. + .+..+|-.++.++-.....||..||+..=|+|.++||.+|+.+|-.+-|+
T Consensus 84 kLsemL~L~~kG~~~v-K~e~e~lny~~qLk~~l~~Ft~~flPhMkeEEEVFQPmLMeyFtyeELk~iK~~Vi~ 156 (160)
T 3u9j_A 84 KLSEMLSLFEKGLKNV-KNEYEQLNYAKQLKERLEAFTRDFLPHMKEEEEVFQPMLMEYFTYEELKDIKKKVIA 156 (160)
T ss_dssp THHHHHHHHHHHHHHC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhc-chHHHHhhHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 3344455455555443 221 1 55678888888888899999999999999999999999999998777654
No 78
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.61 E-value=0.0059 Score=66.30 Aligned_cols=46 Identities=30% Similarity=0.598 Sum_probs=33.6
Q ss_pred CcccccccccccCCCceEecCCCCCCChhhHHHHhhcC--CCCCCCCcccc
Q 001028 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSH--YICPICSKSLG 1165 (1184)
Q Consensus 1117 ~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~--~tCPiCrk~v~ 1165 (1184)
..|.||.+-+.. ..+--.|+|.||..|+..|++.+ .+||.|+....
T Consensus 181 ~~C~iC~~iv~~---g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 181 KICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CBCTTTCSBCSS---CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CcCcchhhHHhC---CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 457777765432 12223499999999999999764 48999998754
No 79
>3u9j_A F-BOX/LRR-repeat protein 5; ubiquitin ligase E3, iron sensor, protein binding; 1.60A {Homo sapiens} PDB: 3u9m_A 3v5x_A 3v5y_A 3v5z_A
Probab=94.32 E-value=0.2 Score=49.80 Aligned_cols=144 Identities=12% Similarity=0.148 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhh-hhHH--hHHHHH
Q 001028 294 IDEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVIFPAVDVEL-SFAQ--EHAEEE 370 (1184)
Q Consensus 294 id~l~~~HkALRrEL~~L~~~a~~i~~~gd~~~L~~L~~r~~fl~~vl~~Hs~aEDevlFPaL~~r~-~me~--EH~~ie 370 (1184)
+|.+..=|--++.-...--+-+.... -.+-.++..|..-+..--..++.|-.-|++.|--.|..|- +.-. -|....
T Consensus 8 vdvF~~PH~RMKqlvg~y~ekLS~tn-Fs~n~d~~~lL~sl~~tF~EfK~HEqIENe~I~~~LqqRs~tV~nvHsdnkLs 86 (160)
T 3u9j_A 8 VDVFTAPHWRMKQLVGLYCDKLSKTN-FSNNNDFRALLQSLYATFKEFKMHEQIENEYIIGLLQQRSQTIYNVHSDNKLS 86 (160)
T ss_dssp GCSSHHHHHHHHHHHHHHHHHHHHCC-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHCCCSSCSCCTTHH
T ss_pred cceeeccHHHHHHHHHHHHHHHhhcc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecccCcchHH
Confidence 55666667666555555555554443 2233355554444443344567798999999999999885 1100 111222
Q ss_pred HHHHHHHHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhCCHHHHHHHHHhHh
Q 001028 371 IQFDKLRCLIESIQSAGANSST-AEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARRHFSPKRQRELLYQSL 442 (1184)
Q Consensus 371 ~l~e~l~~ll~~~~~~~~~~~~-~~~~~eLa~~le~L~~~L~~Hf~~EE~qvfPLl~~~fS~eEq~eL~~~~l 442 (1184)
..+.-|...+.... +... ..+..+|-..+++.......||..||++-=||+.++||.+|...|-.+-+
T Consensus 87 emL~L~~kG~~~vK----~e~e~lny~~qLk~~l~~Ft~~flPhMkeEEEVFQPmLMeyFtyeELk~iK~~Vi 155 (160)
T 3u9j_A 87 EMLSLFEKGLKNVK----NEYEQLNYAKQLKERLEAFTRDFLPHMKEEEEVFQPMLMEYFTYEELKDIKKKVI 155 (160)
T ss_dssp HHHHHHHHHHHHCC----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc----hHHHHhhHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 22333333332211 1111 35567888888899999999999999999999999999999998866544
No 80
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=87.41 E-value=0.11 Score=47.35 Aligned_cols=24 Identities=17% Similarity=-0.179 Sum_probs=0.0
Q ss_pred CCCCCccccccCccccccccchhh
Q 001028 1157 CPICSKSLGDMAVSPLFRTTSVVL 1180 (1184)
Q Consensus 1157 CPiCrk~v~~m~~y~~~~~~~v~~ 1180 (1184)
||+|+|++.||+.||+..+.+|+.
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~ 24 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQ 24 (79)
T ss_dssp ------------------------
T ss_pred CCcccccHHHHHHHHHHHHHHHHh
Confidence 899999999999999999988863
No 81
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=85.27 E-value=0.18 Score=47.22 Aligned_cols=45 Identities=22% Similarity=0.552 Sum_probs=37.2
Q ss_pred cCcccccccccccCCCceEecCCC-CCCChhhHHHHhhcCCCCCCCCccccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCG-HFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCG-H~fH~~Ci~~wl~~~~tCPiCrk~v~~ 1166 (1184)
..+|-.|... .+ ..+.|. |++...|+...|+.+..||||.+.+..
T Consensus 28 ~~nCKsCWf~---~k---~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 28 PQFCKSCWFE---NK---GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCSSCSC---CS---SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred cccChhhccc---cC---CeeeecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 4689999854 22 345787 999999999999999999999999864
No 82
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=78.04 E-value=0.73 Score=42.20 Aligned_cols=49 Identities=20% Similarity=0.621 Sum_probs=30.5
Q ss_pred ccccccC-------CcccCcccccccCCCCCCccccceeeccccCccccCCCCCCCCCCCCcccceEeccccc
Q 001028 999 LRAACCG-------KLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICK 1064 (1184)
Q Consensus 999 l~~~cC~-------~~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~q~~~~~C~~~~C~~~~~a~Y~C~iC~ 1064 (1184)
+.||.|+ ++|.|..|+.. + +....|..|+.+..+ |.. | |.. .|||+.|+
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~~-----~----~~~afCPeCgq~Le~---lkA--C-GA~--~yFC~~C~ 58 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAKD-----F----SLQALCPDCRQPLQV---LKA--C-GAV--DYFCQNGH 58 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCCE-----E----EEEEECSSSCSCCCE---EEE--T-TEE--EECCTTTT
T ss_pred CCCCCCCCccccCCCceECcccccc-----C----CCcccCcchhhHHHH---HHh--c-CCc--CeeeccCC
Confidence 3566664 35567777653 1 224488888876654 554 4 533 89999886
No 83
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=76.47 E-value=1.1 Score=42.91 Aligned_cols=73 Identities=21% Similarity=0.451 Sum_probs=41.2
Q ss_pred CCccccccCCCccccccc-c------------ccccccccCccCcccccccccccCCCceEecCCCCCCChhhHHHHhh-
Q 001028 1087 LGVDFFHCMTCNCCLAKK-L------------VDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC- 1152 (1184)
Q Consensus 1087 l~~~~fHC~~C~~C~s~~-l------------~~H~C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~- 1152 (1184)
-+++...|+.|+..+-.. + ..=.|.+= ..|.||.+.-.....-+.--.|...||..|+++-+.
T Consensus 22 ~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~ 98 (112)
T 3v43_A 22 KPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIEC---KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTR 98 (112)
T ss_dssp CCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTT---CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSS
T ss_pred CchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccC---CccccccCcCCCccceEEcCCCCCeeecccCCCCCCC
Confidence 345778888886554222 1 11122211 158888753111112122237889999999976553
Q ss_pred ---cCCCCCCCCc
Q 001028 1153 ---SHYICPICSK 1162 (1184)
Q Consensus 1153 ---~~~tCPiCrk 1162 (1184)
..-.||.|+.
T Consensus 99 ~P~~~W~C~~C~~ 111 (112)
T 3v43_A 99 MPKGMWICQICRP 111 (112)
T ss_dssp CCSSCCCCTTTSC
T ss_pred CCCCCeECCCCCC
Confidence 2467999985
No 84
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=73.53 E-value=0.62 Score=44.89 Aligned_cols=87 Identities=20% Similarity=0.479 Sum_probs=49.5
Q ss_pred CCCCccccCC------CCCccccccCCCcccc-----cccc--------ccccccccCccCcccccccccccCCCceEec
Q 001028 1076 PFCNLCRVGR------GLGVDFFHCMTCNCCL-----AKKL--------VDHKCREKGLETNCPICCDFLFTSSATVRAL 1136 (1184)
Q Consensus 1076 ~~CgiCRvG~------gl~~~~fHC~~C~~C~-----s~~l--------~~H~C~e~~~~~~CpICle~lf~s~~~v~~L 1136 (1184)
+.|.||.-|. |-+++...|+.|+.-+ .... ..=.|.+= ..|.||... .....-+.--
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~~C~~~-~~~~~ll~Cd 77 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC---KSCILCGTS-ENDDQLLFCD 77 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG---CCCTTTTCC-TTTTTEEECS
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc---CccCccccc-CCCCceEEcC
Confidence 4566666543 3345788888887543 3321 11122211 258888764 1122222223
Q ss_pred CCCCCCChhhHHHHhh----cCCCCCCCCccccc
Q 001028 1137 PCGHFMHSDCFQAYTC----SHYICPICSKSLGD 1166 (1184)
Q Consensus 1137 pCGH~fH~~Ci~~wl~----~~~tCPiCrk~v~~ 1166 (1184)
.|...||..|+.+=+. ..-.||.|...+.+
T Consensus 78 ~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 78 DCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp SSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHH
T ss_pred CCCccccccccCCCccCCCCCCeECccccchhhc
Confidence 7889999999986443 24569988765543
No 85
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=70.64 E-value=1.6 Score=41.55 Aligned_cols=45 Identities=20% Similarity=0.346 Sum_probs=28.3
Q ss_pred cccccccccccCCCceEecCCCCCCChhhHHHHhh----cCCCCCCCCcc
Q 001028 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC----SHYICPICSKS 1163 (1184)
Q Consensus 1118 ~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~----~~~tCPiCrk~ 1163 (1184)
.|.||... .....-+.--.|...||..|+++-+. ....||.|+.-
T Consensus 56 ~C~~C~~~-~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQS-GEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCC-SCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCcc-CCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 47777754 11112222248899999999986543 34568888654
No 86
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=65.83 E-value=2.9 Score=42.40 Aligned_cols=47 Identities=21% Similarity=0.401 Sum_probs=31.3
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccccCccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVSP 1171 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~m~~y~ 1171 (1184)
....|..|.+.+... +.+ .-.-|..||..|+ +|-.|++.+..-+.|+
T Consensus 64 f~~~C~~C~~~I~~~-~~v-~~a~~~~~H~~CF--------~C~~C~~~L~~g~~f~ 110 (169)
T 2rgt_A 64 FGTKCAACQLGIPPT-QVV-RRAQDFVYHLHCF--------ACVVCKRQLATGDEFY 110 (169)
T ss_dssp HSCBCTTTCCBCCTT-SEE-EEETTEEEEGGGC--------BCTTTCCBCCTTCEEE
T ss_pred ccccccccccccCCC-cEE-EEcCCceEeeCCC--------cCCCCCCCCCCCCceE
Confidence 345799998876543 222 2234889999986 7999999886433444
No 87
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=64.73 E-value=1.8 Score=40.81 Aligned_cols=49 Identities=24% Similarity=0.615 Sum_probs=32.7
Q ss_pred ccccccCC-------cccCcccccccCCCCCCccccceeeccccCccccCCCCCCCCCCCCcccceEeccccc
Q 001028 999 LRAACCGK-------LFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICK 1064 (1184)
Q Consensus 999 l~~~cC~~-------~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~q~~~~~C~~~~C~~~~~a~Y~C~iC~ 1064 (1184)
+.||.|+. +|.|..|+.+ + ...-.|..|+.+-.+-+.| | -+.|||..|+
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~-----f----~~~a~CPdC~q~LevLkAC------G--AvdYFC~~ch 88 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEF-----I----EMKALCPDCHQPLQVLKAC------G--AVDYFCQHGH 88 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCE-----E----EEEEECTTTCSBCEEEEET------T--EEEEEETTTT
T ss_pred ccCccCCCcceecCCEEECccccch-----h----hccccCcchhhHHHHHHHh------c--CcchhhccCC
Confidence 67777753 5567777653 1 3467788887766554444 3 4789999997
No 88
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=63.51 E-value=3.2 Score=38.33 Aligned_cols=34 Identities=18% Similarity=0.417 Sum_probs=25.5
Q ss_pred cCcccccccccccCCCceEe-cCCCCCCChhhHHH-Hh
Q 001028 1116 ETNCPICCDFLFTSSATVRA-LPCGHFMHSDCFQA-YT 1151 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~-LpCGH~fH~~Ci~~-wl 1151 (1184)
+..|+||.++.+. .++.. +.|||.|...|+.. |.
T Consensus 3 e~~C~~C~~~~~~--~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQ--DAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCC--BCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCC--CceEECCcCChHHhHHHCHHHhc
Confidence 5679999975332 33443 99999999999998 53
No 89
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=61.83 E-value=3.9 Score=33.72 Aligned_cols=28 Identities=43% Similarity=0.847 Sum_probs=16.5
Q ss_pred cceEeccccc-CccCC----CCcccCCCCCccc
Q 001028 1055 MAKYYCGICK-FFDDE----RVVYHCPFCNLCR 1082 (1184)
Q Consensus 1055 ~a~Y~C~iC~-l~dd~----k~~yHC~~CgiCR 1082 (1184)
|+-|-|-.|. -|+++ -+-.+||+||+=-
T Consensus 1 ~~iY~C~rCg~~fs~~el~~lP~IrCpyCGyri 33 (48)
T 4ayb_P 1 MAVYRCGKCWKTFTDEQLKVLPGVRCPYCGYKI 33 (48)
T ss_dssp ----CCCCTTTTCCCCCSCCCSSSCCTTTCCSC
T ss_pred CcEEEeeccCCCccHHHHhhCCCcccCccCcEE
Confidence 4567777773 46655 4667899999643
No 90
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=55.96 E-value=1.9 Score=41.19 Aligned_cols=28 Identities=25% Similarity=0.657 Sum_probs=19.8
Q ss_pred cCCCCCCChhhHHHHhh--------cCCCCCCCCcc
Q 001028 1136 LPCGHFMHSDCFQAYTC--------SHYICPICSKS 1163 (1184)
Q Consensus 1136 LpCGH~fH~~Ci~~wl~--------~~~tCPiCrk~ 1163 (1184)
--|...||..|...... ..+.||.|+..
T Consensus 79 ~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 79 CICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp TTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred eecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 47899999999875432 23779999853
No 91
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=55.43 E-value=6.6 Score=39.48 Aligned_cols=90 Identities=14% Similarity=0.334 Sum_probs=50.5
Q ss_pred CCcccCCCCCccccCC----CCCccccccCCCcccccccc-ccccccccCccCcccccccccccCCCceEecCCCCCCCh
Q 001028 1070 RVVYHCPFCNLCRVGR----GLGVDFFHCMTCNCCLAKKL-VDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHS 1144 (1184)
Q Consensus 1070 k~~yHC~~CgiCRvG~----gl~~~~fHC~~C~~C~s~~l-~~H~C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~ 1144 (1184)
...++|--||.=...- -....+|+-..|..|...-+ ....-.+.+.+..|.||.+. ++-+--=.|--.||.
T Consensus 12 ~~~i~Ct~Cg~~~~~~q~~~~~~HPll~v~~C~~C~~~y~~~~~~~d~Dg~~d~C~vC~~G----G~LlcCD~Cpr~Fh~ 87 (142)
T 2lbm_A 12 HGIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEG----GNLICCDFCHNAFCK 87 (142)
T ss_dssp CCCCBCTTTCSBSTTTCSSSEEEETTTTEEEEHHHHHHHHHSCCCBCTTSCBCSCSSSCCC----SSEEECSSSCCEEEH
T ss_pred cCCCEecCCCCccccccccchhcCCCccccccHHHHHHHhcCCceecCCCCCCeecccCCC----CcEEeCCCCCCeeeH
Confidence 4555666666533100 00012344444555544222 22222456678899999874 332222378899999
Q ss_pred hhHHHHhh-----------cCCCCCCCCcc
Q 001028 1145 DCFQAYTC-----------SHYICPICSKS 1163 (1184)
Q Consensus 1145 ~Ci~~wl~-----------~~~tCPiCrk~ 1163 (1184)
.|+.+=+. ..-.||+|+..
T Consensus 88 ~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 88 KCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp HHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred hhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 99996542 34679999853
No 92
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=55.37 E-value=11 Score=38.46 Aligned_cols=49 Identities=22% Similarity=0.440 Sum_probs=33.4
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccccCccccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVSPLF 1173 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~m~~y~~~ 1173 (1184)
....|..|...+......+. .-|..||..|| +|-.|++.+..-..||..
T Consensus 118 f~~kC~~C~~~I~~~~~v~~--a~~~~~H~~CF--------~C~~C~~~L~~g~~f~~~ 166 (182)
T 2jtn_A 118 FGTKCAACQLGIPPTQVVRR--AQDFVYHLHCF--------ACVVCKRQLATGDEFYLM 166 (182)
T ss_dssp TSCCCTTTCCCCCSSCCCCE--ETTEECCTTTC--------CCTTTCCCCCTTCEEEEC
T ss_pred cccccccCCCccCCCceEEe--cCCCCEEeCCC--------cCCCCCCCCCCCCceEEc
Confidence 45679999988654322222 34789999986 899999998754445433
No 93
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=51.56 E-value=3.1 Score=35.72 Aligned_cols=49 Identities=20% Similarity=0.506 Sum_probs=33.1
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHh-----hcCCCCCCCCcc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYT-----CSHYICPICSKS 1163 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl-----~~~~tCPiCrk~ 1163 (1184)
....|+||..........+.--.|..-||..|+.--. ...+.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4567999987632233333334788999999986432 256899999864
No 94
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=51.02 E-value=8.7 Score=33.62 Aligned_cols=46 Identities=24% Similarity=0.478 Sum_probs=32.1
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhc----CCCCCCCCccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS----HYICPICSKSL 1164 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~----~~tCPiCrk~v 1164 (1184)
....|.||.+. ++-+.--.|...||..|++..+.. .-.||.|+...
T Consensus 11 ~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 34569999753 232222378899999999987743 46799998653
No 95
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.39 E-value=9 Score=32.87 Aligned_cols=45 Identities=27% Similarity=0.538 Sum_probs=31.1
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccccCccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVSP 1171 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~m~~y~ 1171 (1184)
...|+.|.+.+......+..+ |..||..|| +|-.|++.+.. ..|+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~--~~~~H~~CF--------~C~~C~~~L~~-~~~~ 49 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVAL--DRVFHVGCF--------VCSTCRAQLRG-QHFY 49 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECS--SSEECTTTC--------BCSSSCCBCTT-SCEE
T ss_pred CCCCccCCCccCCCceEEEEC--CCeEcccCC--------cccccCCcCCc-CcCE
Confidence 467999998876543333333 789999885 68899999853 3344
No 96
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.86 E-value=9.8 Score=32.68 Aligned_cols=41 Identities=27% Similarity=0.491 Sum_probs=30.0
Q ss_pred cCccccccccccc--CCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccc
Q 001028 1116 ETNCPICCDFLFT--SSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1184)
Q Consensus 1116 ~~~CpICle~lf~--s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~ 1166 (1184)
...|+.|.+.+.. +...+. .-|..||.+|+ +|-.|++.+.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~--a~~~~wH~~CF--------~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS--FEERQWHNDCF--------NCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE--CSSCEECTTTC--------BCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceEE--ECCcccCcccC--------EeccCCCcCCC
Confidence 4679999998764 323233 34899999886 78999999864
No 97
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=48.51 E-value=7.3 Score=37.21 Aligned_cols=41 Identities=24% Similarity=0.510 Sum_probs=29.9
Q ss_pred ccCcccccccccccCCCceEecCCCCCCC--hhhHHHHhhcCCCCCCCCcccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMH--SDCFQAYTCSHYICPICSKSLG 1165 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH--~~Ci~~wl~~~~tCPiCrk~v~ 1165 (1184)
....|+.|...+......+.. -|..|| ..| ++|-.|++.+.
T Consensus 62 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~~~C--------F~C~~C~~~l~ 104 (126)
T 2xqn_T 62 HAVVCQGCHNAIDPEVQRVTY--NNFSWHASTEC--------FLCSCCSKCLI 104 (126)
T ss_dssp SCCBCTTTCSBCCTTSCEEEE--TTEEEESSTTT--------SBCTTTCCBCT
T ss_pred cCccCcccCCcCCcCceEEEC--CCCEeeCCCCC--------cCcCCCCCccC
Confidence 456799999987643333333 488999 887 47889999987
No 98
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=47.58 E-value=9.1 Score=37.91 Aligned_cols=66 Identities=17% Similarity=0.456 Sum_probs=41.4
Q ss_pred cCCCcccccccc-ccccccccCccCcccccccccccCCCceEecCCCCCCChhhHHHHh-----------hcCCCCCCCC
Q 001028 1094 CMTCNCCLAKKL-VDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYT-----------CSHYICPICS 1161 (1184)
Q Consensus 1094 C~~C~~C~s~~l-~~H~C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl-----------~~~~tCPiCr 1161 (1184)
-..|..|...-. ....-.+...+..|.||.+. ++-+--=.|-..||..|+.+-+ ...-.|++|+
T Consensus 34 v~~C~~C~~~y~~~~~~~d~Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 34 VLICKNCFKYYMSDDISRDSDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp CEEEHHHHHHHHHSCCCBCTTSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred ceeCHhHHhhhhccccccCCCCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 445555554322 33334556778889999864 2212112678999999999642 2346799997
Q ss_pred cc
Q 001028 1162 KS 1163 (1184)
Q Consensus 1162 k~ 1163 (1184)
-.
T Consensus 110 ~~ 111 (129)
T 3ql9_A 110 PE 111 (129)
T ss_dssp CG
T ss_pred CH
Confidence 64
No 99
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=47.53 E-value=4.4 Score=40.80 Aligned_cols=26 Identities=23% Similarity=0.800 Sum_probs=19.2
Q ss_pred CCCccccCCCCCccccccCCCcccccc
Q 001028 1077 FCNLCRVGRGLGVDFFHCMTCNCCLAK 1103 (1184)
Q Consensus 1077 ~CgiCRvG~gl~~~~fHC~~C~~C~s~ 1103 (1184)
+|+||..-. ..++.|||+.||+|---
T Consensus 85 ~C~~C~l~d-~~k~~yHC~~CgiCR~G 110 (143)
T 2dkt_A 85 YCSICHLFD-KDKRQYHCESCGICRIG 110 (143)
T ss_dssp ECSSSCCEE-CSSSEEEETTTTEEEES
T ss_pred Eeceeeccc-CCCceecCCCCCceecc
Confidence 455677652 35689999999999754
No 100
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=46.98 E-value=6.4 Score=41.11 Aligned_cols=49 Identities=20% Similarity=0.570 Sum_probs=33.3
Q ss_pred CcccccccccccCCC----ceEecCCCCCCChhhHHHH------hh-----cCCCCCCCCccccc
Q 001028 1117 TNCPICCDFLFTSSA----TVRALPCGHFMHSDCFQAY------TC-----SHYICPICSKSLGD 1166 (1184)
Q Consensus 1117 ~~CpICle~lf~s~~----~v~~LpCGH~fH~~Ci~~w------l~-----~~~tCPiCrk~v~~ 1166 (1184)
..||||... +...+ -+.--.|..-||..|..-= +. ..|.||.|+..-+.
T Consensus 3 ~~CpiC~k~-Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 3 NFCPLCDKC-YDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CBCTTTCCB-CTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred CcCCCCcCc-cCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 459999876 43333 2223478899999998431 11 27999999988664
No 101
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=46.51 E-value=9.2 Score=32.46 Aligned_cols=14 Identities=43% Similarity=1.215 Sum_probs=10.8
Q ss_pred cceEecccccC-ccC
Q 001028 1055 MAKYYCGICKF-FDD 1068 (1184)
Q Consensus 1055 ~a~Y~C~iC~l-~dd 1068 (1184)
|.+|-|.+|.+ ||.
T Consensus 1 m~~y~C~vCGyvYd~ 15 (54)
T 4rxn_A 1 MKKYTCTVCGYIYDP 15 (54)
T ss_dssp CCCEEETTTCCEECT
T ss_pred CCceECCCCCeEECC
Confidence 57899999986 554
No 102
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=44.53 E-value=16 Score=33.70 Aligned_cols=34 Identities=18% Similarity=0.523 Sum_probs=23.0
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHH
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAY 1150 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~w 1150 (1184)
.+..|+||-. ++......-=-||-.||..|+.+-
T Consensus 14 ~D~~C~VC~~--~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEV--WTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCC--CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCcccc--ccccceeccccccccccHhhcccc
Confidence 5778999974 343321111236899999999986
No 103
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=43.93 E-value=11 Score=32.06 Aligned_cols=14 Identities=43% Similarity=1.201 Sum_probs=10.2
Q ss_pred cceEecccccC-ccC
Q 001028 1055 MAKYYCGICKF-FDD 1068 (1184)
Q Consensus 1055 ~a~Y~C~iC~l-~dd 1068 (1184)
|.+|.|.+|.+ ||.
T Consensus 1 m~~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 1 MRKWQCVVCGFIYDE 15 (55)
T ss_dssp CCEEEETTTCCEEET
T ss_pred CCcEEeCCCCeEECC
Confidence 56888999976 454
No 104
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=43.11 E-value=1.2e+02 Score=34.93 Aligned_cols=79 Identities=10% Similarity=0.162 Sum_probs=46.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhhccccccchhhHHHhhhHHHHHH-----------Hh-hhhhHHHHHHHHHHHHHhhh
Q 001028 73 GGGGDINKLLERYHFFRAIYKHHCNAEDEVIFPALDIRVKNIARTY-----------SL-EHEGESVLFDQLFELLNSSM 140 (1184)
Q Consensus 73 ~d~~~~~~l~~r~~~L~~~~~~H~~aEDevI~PaL~~Rv~~v~~~~-----------~~-EH~~~~~lf~~l~~~l~~~~ 140 (1184)
-|...++++..+++.+...+| +=..--|+++..-|+.....+ .. .-..-+.+++.|...|..+.
T Consensus 45 ~~~~~~~~~q~~le~~~~~lr----~~~~k~~~~~~~~~~~~~~~~~~~~~~il~~v~~~~~~~~~~~~~~l~~~l~~l~ 120 (369)
T 3rfy_A 45 IDNKAIREVQKPLEDITDSLK----IAGVKALDSVERNVRQASRTLQQGKSIIVAGFAESKKDHGNEMIEKLEAGMQDML 120 (369)
T ss_dssp CCCHHHHHHHHHHHTHHHHTT----SCSTTTHHHHHHHHHHHHHHHSCHHHHHTTTCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHhc----cccCCCchHHHHHHHHHHHHHhhCHHHHHhhcChhhHHHHHHHHHHHHHHHHHHH
Confidence 466688888888877766554 212233888876663332222 22 22334568888888888886
Q ss_pred cC-----ch---hHHHHHHHHHH
Q 001028 141 RN-----EE---SYRRELASCTG 155 (1184)
Q Consensus 141 ~~-----~~---~~~~eLa~~l~ 155 (1184)
.. .+ ..++++-..|+
T Consensus 121 ~~~~~~d~~~~~~~~~~~l~~v~ 143 (369)
T 3rfy_A 121 KIVEDRKRDAVAPKQKEILKYVG 143 (369)
T ss_dssp CCCSSCCCSSSGGGHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHH
Confidence 43 11 44566666666
No 105
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.86 E-value=12 Score=32.35 Aligned_cols=44 Identities=20% Similarity=0.510 Sum_probs=31.8
Q ss_pred CccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCcccccc
Q 001028 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1184)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~m 1167 (1184)
.....|+.|.+.+......+..+ |..||..|+ +|-.|++.+.+-
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~--~~~~H~~CF--------~C~~C~~~L~~~ 52 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSN--GELYHEQCF--------VCAQCFQQFPEG 52 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEET--TEEECTTTC--------CCTTTCCCCGGG
T ss_pred CCCCCchhcCCccCCCceEEEeC--ccEeccccC--------eECCCCCCCCCC
Confidence 34578999999876443333343 788999885 688999998764
No 106
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=42.81 E-value=10 Score=31.14 Aligned_cols=26 Identities=35% Similarity=1.080 Sum_probs=18.3
Q ss_pred cceEecccccC-ccC---------C-CCcccCCCCCc
Q 001028 1055 MAKYYCGICKF-FDD---------E-RVVYHCPFCNL 1080 (1184)
Q Consensus 1055 ~a~Y~C~iC~l-~dd---------~-k~~yHC~~Cgi 1080 (1184)
|.+|-|.+|.+ ||. + ..-|.||.||.
T Consensus 2 m~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp CCCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred CCEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 78899999987 552 2 33567887773
No 107
>3agt_A Hemerythrin-like domain protein DCRH; metal binding protein, oxygen binding, DIIRON, four-helix BU; 1.40A {Desulfovibrio vulgaris} PDB: 2awy_A 2avk_A 3agu_A 2awc_A
Probab=41.77 E-value=40 Score=32.76 Aligned_cols=50 Identities=18% Similarity=0.108 Sum_probs=36.1
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001028 361 SFAQEHAEEEIQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQV 421 (1184)
Q Consensus 361 ~me~EH~~ie~l~e~l~~ll~~~~~~~~~~~~~~~~~eLa~~le~L~~~L~~Hf~~EE~qv 421 (1184)
.+..+|.+.-.++++|..++.. + . ..++...++.|..-...||..||.-.
T Consensus 18 ~ID~qHk~L~~lin~l~~a~~~----~------~-~~~i~~~l~~L~~y~~~HF~~EE~lM 67 (136)
T 3agt_A 18 SIDTQHKRLVDYINDLYRAARR----R------D-MDKAREVFDALKNYAVEHFGYEERLF 67 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----T------C-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc----C------c-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667887777777776655432 1 1 35677788889999999999999643
No 108
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=40.18 E-value=7.2 Score=34.43 Aligned_cols=49 Identities=20% Similarity=0.497 Sum_probs=32.7
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhh----cCCCCCCCCcccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC----SHYICPICSKSLG 1165 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~----~~~tCPiCrk~v~ 1165 (1184)
...|+||... .....-+.-=.|.-.||..|+..-.. ..+.||.|+..+.
T Consensus 18 ~~~C~~C~~~-~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 18 IWICPGCNKP-DDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EECBTTTTBC-CSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CcCCCCCCCC-CCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3469999875 22212222237889999999976442 4688999987654
No 109
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.39 E-value=19 Score=31.60 Aligned_cols=43 Identities=19% Similarity=0.369 Sum_probs=29.8
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccccCcc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVS 1170 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~m~~y 1170 (1184)
...|+.|.+.+. ...+. .-|..||.+|+ +|-.|++.+.+-..|
T Consensus 15 ~~~C~~C~~~I~--~~~~~--a~~~~~H~~CF--------~C~~C~~~L~~g~~f 57 (81)
T 1x6a_A 15 GEFCHGCSLLMT--GPFMV--AGEFKYHPECF--------ACMSCKVIIEDGDAY 57 (81)
T ss_dssp SCBCTTTCCBCC--SCCBC--CTTCCBCTTSC--------BCTTTCCBCCTTSCE
T ss_pred CCcCccCCCCcC--ceEEE--ECCceeccccC--------CccCCCCccCCCCcE
Confidence 356999998876 22233 34889999885 688999998653343
No 110
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.39 E-value=14 Score=31.48 Aligned_cols=41 Identities=27% Similarity=0.710 Sum_probs=29.7
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~ 1166 (1184)
...|+.|.+.+......+ ..-|..||.+|+ +|-.|++.+..
T Consensus 5 ~~~C~~C~~~I~~~~~~~--~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKL--EYGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEE--CSTTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEE--EECccccCcccC--------eECCCCCcCCC
Confidence 457999998876433322 234889999886 68899998875
No 111
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=37.39 E-value=17 Score=31.58 Aligned_cols=42 Identities=29% Similarity=0.560 Sum_probs=30.6
Q ss_pred ccCccccccccccc---CCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccc
Q 001028 1115 LETNCPICCDFLFT---SSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1184)
Q Consensus 1115 ~~~~CpICle~lf~---s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~ 1166 (1184)
....|+.|...+.. ....+..+ |..||..|+ +|-.|++.+.+
T Consensus 14 ~~~~C~~C~~~I~~~g~~~~~~~a~--~~~~H~~CF--------~C~~C~~~L~~ 58 (77)
T 2egq_A 14 VAKKCAGCKNPITGFGKGSSVVAYE--GQSWHDYCF--------HCKKCSVNLAN 58 (77)
T ss_dssp CCCCCSSSCCCCCCCSSCCCEEEET--TEEEETTTC--------BCSSSCCBCTT
T ss_pred hCccCcccCCcccCCCCCceeEEEC--cceeCcccC--------EehhcCCCCCC
Confidence 34679999988764 33444444 788999885 79999999874
No 112
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=37.16 E-value=16 Score=33.52 Aligned_cols=15 Identities=27% Similarity=0.802 Sum_probs=11.4
Q ss_pred ccceEecccccC-ccC
Q 001028 1054 SMAKYYCGICKF-FDD 1068 (1184)
Q Consensus 1054 ~~a~Y~C~iC~l-~dd 1068 (1184)
.+.+|.|.+|.+ ||.
T Consensus 24 em~~y~C~vCGyvYD~ 39 (81)
T 2kn9_A 24 DYKLFRCIQCGFEYDE 39 (81)
T ss_dssp CCCEEEETTTCCEEET
T ss_pred CcceEEeCCCCEEEcC
Confidence 478899999976 554
No 113
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.93 E-value=18 Score=31.80 Aligned_cols=43 Identities=26% Similarity=0.604 Sum_probs=30.3
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCcccccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~m 1167 (1184)
....|+.|.+.+......+..+ |..||.+|+ +|-.|++.+..-
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~--~~~~H~~CF--------~C~~C~~~L~~~ 56 (82)
T 1x63_A 14 DSPKCKGCFKAIVAGDQNVEYK--GTVWHKDCF--------TCSNCKQVIGTG 56 (82)
T ss_dssp CSCBCSSSCCBCCSSSCEEECS--SCEEETTTC--------CCSSSCCCCTTS
T ss_pred cCCcCccCCcccccCceEEEEC--ccccccccC--------chhhCCCccCCC
Confidence 3467999998876433333333 788998885 788999998763
No 114
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.87 E-value=17 Score=31.02 Aligned_cols=42 Identities=24% Similarity=0.653 Sum_probs=30.1
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCcccccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~m 1167 (1184)
...|+.|.+.+......+..+ |..||.+|+ +|-.|++.+.+-
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~--~~~~H~~CF--------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYK--GSSWHETCF--------ICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEET--TEEEETTTT--------CCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEEEEC--cCeecccCC--------cccccCCccCCC
Confidence 457999998876443333333 788998885 788999998753
No 115
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.60 E-value=19 Score=31.73 Aligned_cols=41 Identities=22% Similarity=0.311 Sum_probs=30.2
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCcccccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~m 1167 (1184)
....|+-|.+.+. ...+. .-|..||.+|| +|-.|++.+...
T Consensus 14 ~~~~C~~C~~~I~--~~~v~--a~~~~~H~~CF--------~C~~C~~~L~~~ 54 (79)
T 2cor_A 14 GKYICQKCHAIID--EQPLI--FKNDPYHPDHF--------NCANCGKELTAD 54 (79)
T ss_dssp CCCBCTTTCCBCC--SCCCC--CSSSCCCTTTS--------BCSSSCCBCCTT
T ss_pred CCCCCccCCCEec--ceEEE--ECcceeCCCCC--------EeCCCCCccCCC
Confidence 3567999998876 23233 34889999885 799999998853
No 116
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=36.36 E-value=15 Score=32.77 Aligned_cols=14 Identities=29% Similarity=0.964 Sum_probs=11.0
Q ss_pred ccceEecccccC-cc
Q 001028 1054 SMAKYYCGICKF-FD 1067 (1184)
Q Consensus 1054 ~~a~Y~C~iC~l-~d 1067 (1184)
.|.+|.|.+|.+ ||
T Consensus 4 ~m~~y~C~vCGyiYd 18 (70)
T 1dx8_A 4 DEGKYECEACGYIYE 18 (70)
T ss_dssp CSSCEEETTTCCEEC
T ss_pred CCceEEeCCCCEEEc
Confidence 578899999976 44
No 117
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=36.21 E-value=23 Score=40.97 Aligned_cols=86 Identities=22% Similarity=0.460 Sum_probs=56.3
Q ss_pred ccCCCCCccccCCCCCccccccCCCcccccccc-ccccccccCccCcccccccccccCCCceEec--CCCCCCChhhHHH
Q 001028 1073 YHCPFCNLCRVGRGLGVDFFHCMTCNCCLAKKL-VDHKCREKGLETNCPICCDFLFTSSATVRAL--PCGHFMHSDCFQA 1149 (1184)
Q Consensus 1073 yHC~~CgiCRvG~gl~~~~fHC~~C~~C~s~~l-~~H~C~e~~~~~~CpICle~lf~s~~~v~~L--pCGH~fH~~Ci~~ 1149 (1184)
++|-.||--.+- .-...|....|..|...-+ ......+.+.+.-|.||.+. ++-+.-= .|...|...||+.
T Consensus 51 ~~C~~CG~~~~~--~~HPl~~v~lC~~Ck~~y~~~~f~~D~DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~ 124 (386)
T 2pv0_B 51 DICICCGSLQVH--TQHPLFEGGICAPCKDKFLDALFLYDDDGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDS 124 (386)
T ss_dssp GSBTTTCCSCCC--SBCSSBSSBCCHHHHHHHHTTTTCBCSSSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHH
T ss_pred ceeCCCCCcCcc--ccCCCcCcchhhHHHHHHhccCcccCCCCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHH
Confidence 455555543221 1124555667777776444 56667788889999999975 2323323 7999999999999
Q ss_pred Hhh----------cCCCCCCCCccc
Q 001028 1150 YTC----------SHYICPICSKSL 1164 (1184)
Q Consensus 1150 wl~----------~~~tCPiCrk~v 1164 (1184)
.+. ..-.|=+|.-.-
T Consensus 125 n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 125 LVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp HTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred hcChhHHHHhhccCCceEEEcCCcc
Confidence 872 245688887653
No 118
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=35.90 E-value=13 Score=27.66 Aligned_cols=29 Identities=28% Similarity=0.734 Sum_probs=19.3
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhH
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCF 1147 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci 1147 (1184)
...|+.|...++.. +.+. .=|..||+.|+
T Consensus 3 ~~~C~~C~k~Vy~~-Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPT-EKVN--CLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGG-GCCC--SSSSCCCGGGC
T ss_pred CCcCCccCCEEecc-eeEE--ECCeEecccCC
Confidence 45788888776643 3233 34788898885
No 119
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.73 E-value=19 Score=30.62 Aligned_cols=40 Identities=28% Similarity=0.859 Sum_probs=29.8
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCcccccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~m 1167 (1184)
...|+.|.+.+.. ..+..+ |..||.+|| +|-.|++.+.+.
T Consensus 5 ~~~C~~C~~~I~~--~~~~a~--~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG--RVIKAM--NNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS--CCEEET--TEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc--eEEEEC--cccccccCC--------EeCCCCCcCCCC
Confidence 4679999988763 334333 788999886 788999998875
No 120
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=35.12 E-value=16 Score=34.93 Aligned_cols=38 Identities=26% Similarity=0.605 Sum_probs=22.0
Q ss_pred cccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCcccc
Q 001028 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1184)
Q Consensus 1118 ~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~ 1165 (1184)
.|+.|...+......+..+ |..||..|| +|-.|++.+.
T Consensus 10 ~C~~C~~~I~~~e~~~~a~--~~~~H~~CF--------~C~~C~~~L~ 47 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRVK--DKVYHLECF--------KCAACQKHFS 47 (123)
T ss_dssp CCSSSSCCCCTTCCCCCCS--SCCCCTTTC--------BCTTTCCBCC
T ss_pred cccCCCCeecCCceEEEEC--CcccccccC--------ccccCCCCCC
Confidence 5777776655322222222 677777765 5666777763
No 121
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.47 E-value=23 Score=31.05 Aligned_cols=41 Identities=27% Similarity=0.579 Sum_probs=28.6
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~ 1166 (1184)
...|+.|...+......+.. =|..||..|+ +|-.|++.+.+
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFY--EDRHFHEGCF--------RCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCC--SSCCCBTTTS--------BCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEEEEe--CCccccccCC--------eecCCCCccCC
Confidence 45799999887633332222 3789999885 68899998874
No 122
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.07 E-value=19 Score=31.23 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=29.7
Q ss_pred cCccccccccccc--CCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccc
Q 001028 1116 ETNCPICCDFLFT--SSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1184)
Q Consensus 1116 ~~~CpICle~lf~--s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~ 1166 (1184)
...|+.|.+.+.. ....+.. -|..||.+|+ +|-.|++.+.+
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~CF--------~C~~C~~~L~~ 47 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICF--QDSQWHSECF--------NCGKCSVSLVG 47 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEE--TTEEEEGGGC--------BCTTTCCBCSS
T ss_pred CCCCccCCCcccCCCCceeEEE--CCcccCcccC--------ChhhCCCcCCC
Confidence 4579999988764 3333333 4788999885 78899998863
No 123
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=32.93 E-value=16 Score=33.94 Aligned_cols=17 Identities=29% Similarity=0.784 Sum_probs=12.1
Q ss_pred CcccceEecccccC-ccC
Q 001028 1052 GLSMAKYYCGICKF-FDD 1068 (1184)
Q Consensus 1052 ~~~~a~Y~C~iC~l-~dd 1068 (1184)
+..|.+|.|.+|.+ ||.
T Consensus 30 ~~~m~~y~C~vCGyvYD~ 47 (87)
T 1s24_A 30 GKAYLKWICITCGHIYDE 47 (87)
T ss_dssp --CCCEEEETTTTEEEET
T ss_pred ccCCceEECCCCCeEecC
Confidence 55688999999985 554
No 124
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=32.71 E-value=16 Score=30.90 Aligned_cols=43 Identities=21% Similarity=0.565 Sum_probs=30.8
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCcccccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~m 1167 (1184)
....|+.|...+......+.. =|..||..|+ +|-.|++.+.+.
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCCC
Confidence 456799999886644322233 3778999887 788999998765
No 125
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=31.28 E-value=24 Score=24.90 Aligned_cols=19 Identities=21% Similarity=0.503 Sum_probs=13.6
Q ss_pred HHHHHHHHhc-CCCCCCCcc
Q 001028 234 LRQVIFAWME-GVKVSDKSC 252 (1184)
Q Consensus 234 l~~~~~~w~~-~~~~~~~~~ 252 (1184)
||+++-+||+ |++++.+..
T Consensus 2 lqellgqwlkdggpssgrpp 21 (26)
T 1rij_A 2 LQELLGQWLKDGGPSSGRPP 21 (26)
T ss_dssp HHHHHHHHHHTTGGGSSSCC
T ss_pred HHHHHHHHHHcCCCCCCCCC
Confidence 7999999999 444444443
No 126
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=30.66 E-value=23 Score=31.49 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=12.2
Q ss_pred ceEecccccCc-c-CCCCcccCCCCCc
Q 001028 1056 AKYYCGICKFF-D-DERVVYHCPFCNL 1080 (1184)
Q Consensus 1056 a~Y~C~iC~l~-d-d~k~~yHC~~Cgi 1080 (1184)
-.|.|..|..- + ++.+..+|+.||-
T Consensus 27 v~Y~C~~CG~~~e~~~~d~irCp~CG~ 53 (70)
T 1twf_L 27 LKYICAECSSKLSLSRTDAVRCKDCGH 53 (70)
T ss_dssp CCEECSSSCCEECCCTTSTTCCSSSCC
T ss_pred EEEECCCCCCcceeCCCCCccCCCCCc
Confidence 34566666542 1 1234445666663
No 127
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=30.29 E-value=20 Score=33.82 Aligned_cols=37 Identities=19% Similarity=0.380 Sum_probs=24.8
Q ss_pred CccCcccccccccccCCCceEecCCCCCCChhhHHHHh
Q 001028 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYT 1151 (1184)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl 1151 (1184)
..+..|.||.+. -...+-+.=-.|+..||..|+...+
T Consensus 5 ~~~~~C~~C~~~-g~~~~ll~C~~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 5 SSGANCAVCDSP-GDLLDQFFCTTCGQHYHGMCLDIAV 41 (111)
T ss_dssp CCCSCBTTTCCC-CCTTTSEECSSSCCEECTTTTTCCC
T ss_pred CCCCCCcCCCCC-CCCcCCeECCCCCCCcChHHhCCcc
Confidence 356789999865 1111113335899999999998765
No 128
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=30.27 E-value=22 Score=32.56 Aligned_cols=53 Identities=25% Similarity=0.464 Sum_probs=33.9
Q ss_pred ccccCCCccccccccccccccccCccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccccCcc
Q 001028 1091 FFHCMTCNCCLAKKLVDHKCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVS 1170 (1184)
Q Consensus 1091 ~fHC~~C~~C~s~~l~~H~C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~m~~y 1170 (1184)
++||..|+.=+... .-||-|..+|-. .-.||-. +|-|+-|..-+..-.+.
T Consensus 18 ~~~C~~C~~~~~~~------------afCPeCgq~Le~------lkACGA~------------~yFC~~C~~LiSkkrv~ 67 (81)
T 2jrp_A 18 TAHCETCAKDFSLQ------------ALCPDCRQPLQV------LKACGAV------------DYFCQNGHGLISKKRVN 67 (81)
T ss_dssp EEECTTTCCEEEEE------------EECSSSCSCCCE------EEETTEE------------EECCTTTTCCCCTTSSE
T ss_pred ceECccccccCCCc------------ccCcchhhHHHH------HHhcCCc------------CeeeccCCCEeecceEE
Confidence 77788887765543 478888776421 2267744 77788887776665555
Q ss_pred ccc
Q 001028 1171 PLF 1173 (1184)
Q Consensus 1171 ~~~ 1173 (1184)
|..
T Consensus 68 f~~ 70 (81)
T 2jrp_A 68 FVI 70 (81)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
No 129
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=30.07 E-value=27 Score=28.43 Aligned_cols=45 Identities=18% Similarity=0.502 Sum_probs=28.6
Q ss_pred cccccccccccCCCceEecCCCCCCChhhHHHHhh----cCCCCCCCCcc
Q 001028 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC----SHYICPICSKS 1163 (1184)
Q Consensus 1118 ~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~----~~~tCPiCrk~ 1163 (1184)
.|.||... ...+.-+.--.|.-.||..|+++=+. ....||.|+..
T Consensus 2 ~C~vC~~~-~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKK-GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCS-SCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCC-CCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 48888764 11222222237889999999975432 24569999764
No 130
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=29.00 E-value=20 Score=30.19 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=30.5
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccccCccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVSP 1171 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~m~~y~ 1171 (1184)
...|+.|.+.+. .+. +..-|..||.+|+ +|-.|++.+.. ..|+
T Consensus 5 ~~~C~~C~~~I~--~~~--~~a~~~~~H~~CF--------~C~~C~~~L~~-~~~~ 47 (66)
T 1nyp_A 5 VPICGACRRPIE--GRV--VNAMGKQWHVEHF--------VCAKCEKPFLG-HRHY 47 (66)
T ss_dssp CCEETTTTEECC--SCE--ECCTTSBEETTTC--------BCTTTCCBCSS-SCCE
T ss_pred CCCCcccCCEec--ceE--EEECccccccCcC--------EECCCCCCCCC-CceE
Confidence 457999999876 222 2345889999885 68999999875 3344
No 131
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=28.89 E-value=23 Score=31.75 Aligned_cols=11 Identities=18% Similarity=0.736 Sum_probs=5.2
Q ss_pred CCcccCCCCCc
Q 001028 1070 RVVYHCPFCNL 1080 (1184)
Q Consensus 1070 k~~yHC~~Cgi 1080 (1184)
-+|+||..||.
T Consensus 42 ~GIW~C~~C~~ 52 (72)
T 3jyw_9 42 AGIWTCSCCKK 52 (72)
T ss_dssp SSCBCCSSSCC
T ss_pred CCeEECCCCCC
Confidence 34455555543
No 132
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=27.82 E-value=24 Score=33.76 Aligned_cols=45 Identities=24% Similarity=0.422 Sum_probs=31.4
Q ss_pred cccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccccCcccc
Q 001028 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVSPL 1172 (1184)
Q Consensus 1118 ~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~m~~y~~ 1172 (1184)
.|+.|.+.+......+.. =|..||..|+ +|-.|++.+..-..|+.
T Consensus 68 ~C~~C~~~I~~~e~~~~a--~~~~~H~~CF--------~C~~C~~~L~~g~~f~~ 112 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRV--KDKVYHLECF--------KCAACQKHFCVGDRYLL 112 (131)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEEEGGGC--------BCTTTCCBCCTTCEEEE
T ss_pred ChhhcCCccCccceeEee--CCceECccCc--------ccCCCCCCCCCCCEEEE
Confidence 799999987543322233 4899999984 79999999854444443
No 133
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=27.40 E-value=8.4 Score=33.63 Aligned_cols=48 Identities=17% Similarity=0.388 Sum_probs=30.9
Q ss_pred ccCcccccccccccCCCceEec-CCCCCCChhhHHHH------hh----cCCCCCCCCc
Q 001028 1115 LETNCPICCDFLFTSSATVRAL-PCGHFMHSDCFQAY------TC----SHYICPICSK 1162 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~L-pCGH~fH~~Ci~~w------l~----~~~tCPiCrk 1162 (1184)
....|++|..+.......+.-- .|.--||..|+.-= +. ..+.||.|.+
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 4567999998854443333334 79999999998421 11 2677988863
No 134
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=27.32 E-value=26 Score=33.72 Aligned_cols=26 Identities=23% Similarity=0.565 Sum_probs=13.8
Q ss_pred ceEecccccC-ccCCCCcc-cCCCCCcc
Q 001028 1056 AKYYCGICKF-FDDERVVY-HCPFCNLC 1081 (1184)
Q Consensus 1056 a~Y~C~iC~l-~dd~k~~y-HC~~CgiC 1081 (1184)
+.|.|..|.. |.-+...+ .||.||--
T Consensus 72 ~~~~C~~CG~~~e~~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 72 VELECKDCSHVFKPNALDYGVCEKCHSK 99 (119)
T ss_dssp CEEECSSSSCEECSCCSTTCCCSSSSSC
T ss_pred ceEEcCCCCCEEeCCCCCCCcCccccCC
Confidence 4555555532 33334556 67777744
No 135
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=27.20 E-value=29 Score=31.53 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=25.2
Q ss_pred CcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCcccc
Q 001028 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLG 1165 (1184)
Q Consensus 1117 ~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~ 1165 (1184)
-.|..|...|. + ... ...=|..|...|+.+ .....|..|.+.|.
T Consensus 34 F~C~~C~~~L~-~-~~~-~~~~g~~yC~~cy~~--~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 34 FRCAKCLHPLA-N-ETF-VAKDNKILCNKCTTR--EDSPKCKGCFKAIV 77 (101)
T ss_dssp CCCSSSCCCTT-S-SCC-EEETTEEECHHHHTT--CCCCBCSSSCCBCC
T ss_pred CcccccCCCCC-c-Cee-ECcCCEEEChhHhhh--hcCCccccCCCccc
Confidence 35677776652 2 111 122356676777633 23567888888886
No 136
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=27.08 E-value=17 Score=35.44 Aligned_cols=30 Identities=17% Similarity=0.434 Sum_probs=16.6
Q ss_pred cceEecccccCcc---CCCCcccCCCCCccccC
Q 001028 1055 MAKYYCGICKFFD---DERVVYHCPFCNLCRVG 1084 (1184)
Q Consensus 1055 ~a~Y~C~iC~l~d---d~k~~yHC~~CgiCRvG 1084 (1184)
-++|+|+-|.--+ ..-+|+||.+||.=-.|
T Consensus 58 ~akytCPfCGk~~vKR~avGIW~C~~Cgk~fAG 90 (116)
T 3cc2_Z 58 NEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTG 90 (116)
T ss_dssp HSCEECSSSCCEEEEEEETTEEEETTTCCEEEC
T ss_pred ccCCcCCCCCCceeEecCceeEECCCCCCEEEC
Confidence 3566666664311 11466777777765555
No 137
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.04 E-value=34 Score=30.35 Aligned_cols=43 Identities=30% Similarity=0.722 Sum_probs=30.7
Q ss_pred CccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCcccccc
Q 001028 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1184)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~m 1167 (1184)
.....|+.|...++.. +.+. .-|..||..|| +|-.|++.+...
T Consensus 13 ~~~~~C~~C~~~I~~~-e~v~--a~~~~wH~~CF--------~C~~C~~~L~~~ 55 (82)
T 2co8_A 13 GAGDLCALCGEHLYVL-ERLC--VNGHFFHRSCF--------RCHTCEATLWPG 55 (82)
T ss_dssp CSSCBCSSSCCBCCTT-TBCC--BTTBCCBTTTC--------BCSSSCCBCCTT
T ss_pred CCCCCCcccCCCcccc-eEEE--ECCCeeCCCcC--------EEcCCCCCcCCC
Confidence 3456799999887543 3333 34889999985 788899888653
No 138
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=26.84 E-value=22 Score=33.29 Aligned_cols=15 Identities=20% Similarity=0.634 Sum_probs=7.1
Q ss_pred CCcccCCCCCccccC
Q 001028 1070 RVVYHCPFCNLCRVG 1084 (1184)
Q Consensus 1070 k~~yHC~~CgiCRvG 1084 (1184)
-+|+||..||.=-.|
T Consensus 52 ~GIW~C~~C~~~~AG 66 (92)
T 3izc_m 52 AGIWTCSCCKKTVAG 66 (92)
T ss_dssp TTEEECTTTCCEEEC
T ss_pred cceEEcCCCCCEEeC
Confidence 345555555543333
No 139
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=26.68 E-value=27 Score=29.85 Aligned_cols=47 Identities=19% Similarity=0.432 Sum_probs=31.0
Q ss_pred CccCcccccccccccCCCceEecCCCCCCChhhHHHHhh----cCCCCCCCCccc
Q 001028 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC----SHYICPICSKSL 1164 (1184)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~----~~~tCPiCrk~v 1164 (1184)
..+..|.||.+. .+-+.--.|.-.||..|+..=+. ..-.||.|....
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 345678899753 22222236889999999986443 345699998754
No 140
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.60 E-value=33 Score=28.99 Aligned_cols=39 Identities=28% Similarity=0.667 Sum_probs=28.8
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~ 1166 (1184)
...|+.|.+.+.. +.+.. -|..||.+|+ +|-.|++.+..
T Consensus 5 ~~~C~~C~~~I~~--~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 43 (69)
T 2cur_A 5 SSGCVKCNKAITS--GGITY--QDQPWHADCF--------VCVTCSKKLAG 43 (69)
T ss_dssp CCCCSSSCCCCCT--TCEEE--TTEEECTTTT--------BCTTTCCBCTT
T ss_pred cCCCcccCCEeCc--ceEEE--CccccccCcC--------EECCCCCCCCC
Confidence 4579999988753 33444 3788999886 68899999863
No 141
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=26.56 E-value=36 Score=28.52 Aligned_cols=13 Identities=38% Similarity=1.214 Sum_probs=9.7
Q ss_pred cceEecccccC-cc
Q 001028 1055 MAKYYCGICKF-FD 1067 (1184)
Q Consensus 1055 ~a~Y~C~iC~l-~d 1067 (1184)
|.+|.|.+|.+ ||
T Consensus 1 m~~y~C~~CGyvYd 14 (52)
T 1e8j_A 1 MDIYVCTVCGYEYD 14 (52)
T ss_dssp CCCEECSSSCCCCC
T ss_pred CCcEEeCCCCeEEc
Confidence 56788999976 44
No 142
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=26.51 E-value=16 Score=33.45 Aligned_cols=30 Identities=17% Similarity=0.492 Sum_probs=20.7
Q ss_pred ceEeccccc---CccCCCCcccCCCCCccccCC
Q 001028 1056 AKYYCGICK---FFDDERVVYHCPFCNLCRVGR 1085 (1184)
Q Consensus 1056 a~Y~C~iC~---l~dd~k~~yHC~~CgiCRvG~ 1085 (1184)
++|.|+-|. +|+..-++.+|++||.--.|+
T Consensus 26 ~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEEECC
T ss_pred ccCcCCCCCCcceeccCCCeEECCCCCCEecCC
Confidence 467777774 344447888999998776664
No 143
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.49 E-value=38 Score=29.68 Aligned_cols=50 Identities=28% Similarity=0.539 Sum_probs=0.0
Q ss_pred cccccCccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccccCcc
Q 001028 1109 KCREKGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVS 1170 (1184)
Q Consensus 1109 ~C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~m~~y 1170 (1184)
.|-.+.....|+.|.+.+. ...+..+ |..||.+|+ +|-.|++.+.+-..+
T Consensus 8 ~dy~~~~~~~C~~C~~~I~--~~~v~a~--~~~wH~~CF--------~C~~C~~~L~~~~~~ 57 (81)
T 1v6g_A 8 LDYQRLYGTRCFSCDQFIE--GEVVSAL--GKTYHPDCF--------VCAVCRLPFPPGDRV 57 (81)
T ss_dssp SCGGGSCCCBCTTTCCBCC--SCCEEET--TEEECTTTS--------SCSSSCCCCCSSSCE
T ss_pred HHHHhHhCCcCccccCEec--cceEEEC--CceeCccCC--------ccccCCCCCCCCCEE
No 144
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.03 E-value=46 Score=28.77 Aligned_cols=39 Identities=15% Similarity=0.550 Sum_probs=28.3
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~ 1166 (1184)
...|+-|...+.. ..+ ..-|..||.+|| +|-.|++.+.+
T Consensus 5 ~~~C~~C~~~I~~--~~v--~a~~~~wH~~CF--------~C~~C~~~L~~ 43 (73)
T 1wig_A 5 SSGCDSCEKYITG--RVL--EAGEKHYHPSCA--------LCVRCGQMFAE 43 (73)
T ss_dssp CCSCSSSCCCCSS--CCB--CCSSCCBCTTTS--------CCSSSCCCCCS
T ss_pred cCCcccCCCEecC--eeE--EeCCCCCCCCcC--------EeCCCCCCCCC
Confidence 4578899888653 222 345889999885 78889998874
No 145
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=26.00 E-value=19 Score=37.84 Aligned_cols=47 Identities=19% Similarity=0.431 Sum_probs=31.7
Q ss_pred CccCcccccccccccCCCceEecCCCCCCChhhHHHHhh----cCCCCCCCCccc
Q 001028 1114 GLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC----SHYICPICSKSL 1164 (1184)
Q Consensus 1114 ~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~----~~~tCPiCrk~v 1164 (1184)
..+..|.||... ++-+.-=.|.-.||..|+.+-+. ..-.||.|+..-
T Consensus 5 ~~~~~C~~C~~~----g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC----EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC----CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 345679999753 22112226889999999987654 346799999754
No 146
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=25.15 E-value=9.1 Score=36.36 Aligned_cols=50 Identities=16% Similarity=0.438 Sum_probs=33.1
Q ss_pred cCcccccccccccCCCceEec-CCCCCCChhhHHHH------h----hcCCCCCCCCcccc
Q 001028 1116 ETNCPICCDFLFTSSATVRAL-PCGHFMHSDCFQAY------T----CSHYICPICSKSLG 1165 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~L-pCGH~fH~~Ci~~w------l----~~~~tCPiCrk~v~ 1165 (1184)
...|+||..+......-+.-= .|.--||..|+.-= + ...+.||.|++.-.
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 357999998744333322222 68899999998521 1 15689999987643
No 147
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=25.08 E-value=22 Score=32.85 Aligned_cols=12 Identities=17% Similarity=0.456 Sum_probs=7.7
Q ss_pred CccCcccccccc
Q 001028 1114 GLETNCPICCDF 1125 (1184)
Q Consensus 1114 ~~~~~CpICle~ 1125 (1184)
...-.|-||.+.
T Consensus 45 ~g~l~C~~Cg~~ 56 (85)
T 1wii_A 45 TGVISCTVCLEE 56 (85)
T ss_dssp EEEEEESSSCCE
T ss_pred EEEEEcccCCCe
Confidence 345567777765
No 148
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.02 E-value=33 Score=30.80 Aligned_cols=42 Identities=17% Similarity=0.383 Sum_probs=30.8
Q ss_pred cCccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccc
Q 001028 1113 KGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1184)
Q Consensus 1113 ~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~ 1166 (1184)
......|+.|.+.+. .+.+. .-|..||.+|| +|-.|++.+.+
T Consensus 22 ~~~~~~C~~C~~~I~--~~~v~--a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 22 GKRTPMCAHCNQVIR--GPFLV--ALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp TTCCCBBSSSCCBCC--SCEEE--ETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCCCCccCCCEec--ceEEE--ECCccccccCC--------ccCCCCCCCCC
Confidence 344567999999874 23333 34899999886 78899999875
No 149
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=24.80 E-value=1.4e+02 Score=29.97 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=53.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHHHH--HHHhhhHHHhhCCHHHHHHHH--------HHHhhcCCHH---HHHHHHhhhc
Q 001028 143 EESYRRELASCTGALQTSISQHMSKE--EEQVFPLLIEKFSFEEQASLV--------WQFLCSIPVN---MMAEFLPWLS 209 (1184)
Q Consensus 143 ~~~~~~eLa~~l~~l~~~l~qHm~~E--E~~v~PLl~~~fS~~E~a~L~--------~~~i~siP~~---~m~~~LpWm~ 209 (1184)
+++....+..+.+.+.+.+.+.+..+ +..+.|+..+|||.+|+.+|. ..++...|.- .|...-.|+.
T Consensus 41 p~~~~~~~~~~~~k~~~~~~k~~s~~~l~~~~~~iY~~~fT~~El~~l~~FY~sp~Gkk~~~~~p~~~~~~~~~~q~~~~ 120 (147)
T 3oao_A 41 PESKKAVLERYQAKANAELDRAIGWDKIKPELIKLYTTNFTESELKDLNAFYQSPLGKKVLEKMPRLTAESAQLTQAKLQ 120 (147)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34556777778888888888888544 588999999999999999875 4577776653 3446667777
Q ss_pred CCCCHHH
Q 001028 210 SSISSDE 216 (1184)
Q Consensus 210 ~~lsp~E 216 (1184)
. +.|.-
T Consensus 121 ~-~~p~~ 126 (147)
T 3oao_A 121 G-AVEPV 126 (147)
T ss_dssp G-GHHHH
T ss_pred H-HHHHH
Confidence 6 33443
No 150
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=24.75 E-value=23 Score=33.17 Aligned_cols=10 Identities=20% Similarity=0.624 Sum_probs=4.8
Q ss_pred CcccCCCCCc
Q 001028 1071 VVYHCPFCNL 1080 (1184)
Q Consensus 1071 ~~yHC~~Cgi 1080 (1184)
+|+||..||.
T Consensus 53 GIW~C~~Cg~ 62 (92)
T 3iz5_m 53 GIWGCKDCGK 62 (92)
T ss_dssp TEEECSSSCC
T ss_pred ceEEcCCCCC
Confidence 4445544443
No 151
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=24.64 E-value=24 Score=29.08 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=28.7
Q ss_pred CcccccccccccCCCceEec-CCCCCCChhhHHHH----hhcCCCCCCCC
Q 001028 1117 TNCPICCDFLFTSSATVRAL-PCGHFMHSDCFQAY----TCSHYICPICS 1161 (1184)
Q Consensus 1117 ~~CpICle~lf~s~~~v~~L-pCGH~fH~~Ci~~w----l~~~~tCPiCr 1161 (1184)
-.|.||..+...+...+.-- .|.--||..|+.-- ....+.||.|+
T Consensus 3 c~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 3 CAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CSCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred ccCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 35889987732222223323 68889999998532 23679999996
No 152
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=23.93 E-value=31 Score=29.39 Aligned_cols=47 Identities=19% Similarity=0.484 Sum_probs=32.1
Q ss_pred cCccCcccccccccccCCCceEecCCCCCCChhhHHHHhh----cCCCCCCCCcc
Q 001028 1113 KGLETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTC----SHYICPICSKS 1163 (1184)
Q Consensus 1113 ~~~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~----~~~tCPiCrk~ 1163 (1184)
...+..|.||.+. .+-+.--.|.-.||..|+..=+. ..-.||.|.+.
T Consensus 8 ~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3456779999863 22222237889999999987542 35679999764
No 153
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=23.81 E-value=20 Score=32.50 Aligned_cols=12 Identities=42% Similarity=1.290 Sum_probs=10.4
Q ss_pred cceEecccccCc
Q 001028 1055 MAKYYCGICKFF 1066 (1184)
Q Consensus 1055 ~a~Y~C~iC~l~ 1066 (1184)
|.+|||+.|+.|
T Consensus 1 mPkYyCdYCd~~ 12 (77)
T 3cw1_L 1 MPKFYCDYCDTY 12 (77)
T ss_pred CCCcccccCCce
Confidence 578999999876
No 154
>2ajj_A NS5A, nonstructural protein 5A; IN-plane membrane anchor domain, amphipathic alpha-helix, membrane protein; NMR {Synthetic} PDB: 2ajm_A 2ajn_A 2ajo_A
Probab=23.68 E-value=65 Score=23.90 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=18.8
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 001028 645 PIDNIFKFHKAIRKDLEYLDG 665 (1184)
Q Consensus 645 PId~i~~fHkAIRkdL~~l~~ 665 (1184)
-+|.|+.+|+-|++-++.++-
T Consensus 5 iLdLl~~lh~~~~~~ikk~~l 25 (28)
T 2ajj_A 5 VLDLIYSLHKQINRGLKKIVL 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 589999999999999998863
No 155
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=23.46 E-value=11 Score=34.72 Aligned_cols=54 Identities=20% Similarity=0.543 Sum_probs=35.7
Q ss_pred cCcccccccccccCCCceEe-cCCCCCCChhhHHHHhh--------cCCCCCCCCccccccCc
Q 001028 1116 ETNCPICCDFLFTSSATVRA-LPCGHFMHSDCFQAYTC--------SHYICPICSKSLGDMAV 1169 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~-LpCGH~fH~~Ci~~wl~--------~~~tCPiCrk~v~~m~~ 1169 (1184)
+..|.||...-......+.. =.|...||..|+.+=+. ..-.||.|......+..
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~~ 78 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQ 78 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTT
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhhcc
Confidence 56799998651111122222 27899999999986543 34679999887766554
No 156
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.33 E-value=44 Score=29.54 Aligned_cols=44 Identities=25% Similarity=0.425 Sum_probs=31.6
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccccCccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVSP 1171 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~m~~y~ 1171 (1184)
....|+-|.+.+... +.+..+ |..||.+|| +|-.|++.+.. .||
T Consensus 14 ~~~~C~~C~~~I~~~-~~v~a~--~~~wH~~CF--------~C~~C~~~L~~--~~~ 57 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHG-QSLLAL--DKQWHVSCF--------KCQTCSVILTG--EYI 57 (80)
T ss_dssp SCSCCTTTCCCCSSS-CCEEET--TEEECTTTC--------BCSSSCCBCSS--CCE
T ss_pred CCCCCcCcCCeeCCC-eEEEEC--CcccccccC--------CcCcCCCCcCC--CeE
Confidence 356799999887633 334444 788999885 78999998874 354
No 157
>3agt_A Hemerythrin-like domain protein DCRH; metal binding protein, oxygen binding, DIIRON, four-helix BU; 1.40A {Desulfovibrio vulgaris} PDB: 2awy_A 2avk_A 3agu_A 2awc_A
Probab=23.12 E-value=5e+02 Score=24.81 Aligned_cols=112 Identities=14% Similarity=0.182 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCcccHHHHHHHHHHHHHHHHhhhhccccch----hhhhhhhhhhHHhHHHHH
Q 001028 295 DEIMLWHNAIKRELNDIAEAARKIQLSGDFSDLSAFNKRLQFIAEVCIFHSIAEDKVI----FPAVDVELSFAQEHAEEE 370 (1184)
Q Consensus 295 d~l~~~HkALRrEL~~L~~~a~~i~~~gd~~~L~~L~~r~~fl~~vl~~Hs~aEDevl----FPaL~~r~~me~EH~~ie 370 (1184)
..+=.-|+.|=.-+++|...+.. ++ ...+..-+.+|.+-...|=..|+.++ ||.++.+. ++++
T Consensus 17 ~~ID~qHk~L~~lin~l~~a~~~----~~---~~~i~~~l~~L~~y~~~HF~~EE~lM~~~~yp~~~~H~------~~H~ 83 (136)
T 3agt_A 17 PSIDTQHKRLVDYINDLYRAARR----RD---MDKAREVFDALKNYAVEHFGYEERLFADYAYPEATRHK------EIHR 83 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----TC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHH------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc----Cc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHH------HHHH
Confidence 34445788777777777766543 22 45566677888899999999998754 67665443 3344
Q ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 001028 371 IQFDKLRCLIESIQSAGANSSTAEFYTKLCSQADLIMASIQKHFRNEEVQVLPLARR 427 (1184)
Q Consensus 371 ~l~e~l~~ll~~~~~~~~~~~~~~~~~eLa~~le~L~~~L~~Hf~~EE~qvfPLl~~ 427 (1184)
..++.+..+...+.. +. ..+..+| +.-|..-|..|...+-...-+.+.+
T Consensus 84 ~f~~~v~~l~~~~~~-g~----~~~~~~l---~~~L~~Wl~~HI~~~D~~~~~~l~~ 132 (136)
T 3agt_A 84 RFVETVLKWEKQLAA-GD----PEVVMTT---LRGLVDWLVNHIMKEDKKYEAYLRE 132 (136)
T ss_dssp HHHHHHHHHHHHHTT-CC----HHHHHHH---HHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-CC----hHHHHHH---HHHHHHHHHHHhHHHhHHHHHHHHH
Confidence 455555555554432 21 1233333 4446778999999998888776644
No 158
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=23.10 E-value=35 Score=28.57 Aligned_cols=12 Identities=42% Similarity=1.212 Sum_probs=7.7
Q ss_pred eEecccccC-ccC
Q 001028 1057 KYYCGICKF-FDD 1068 (1184)
Q Consensus 1057 ~Y~C~iC~l-~dd 1068 (1184)
+|.|.+|.+ ||.
T Consensus 2 ~~~C~~CGyvYd~ 14 (52)
T 1yk4_A 2 KLSCKICGYIYDE 14 (52)
T ss_dssp EEEESSSSCEEET
T ss_pred cEEeCCCCeEECC
Confidence 577777765 443
No 159
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.94 E-value=43 Score=29.83 Aligned_cols=48 Identities=21% Similarity=0.544 Sum_probs=31.1
Q ss_pred CcccccccccccCCCceEecCCCCCCChhhHHHHh-----hcCCCCCCCCcccc
Q 001028 1117 TNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYT-----CSHYICPICSKSLG 1165 (1184)
Q Consensus 1117 ~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl-----~~~~tCPiCrk~v~ 1165 (1184)
.-| ||..........|.--.|.--||..|+.--. ...+.||.|+..-.
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 345 8877521123333334789999999995321 25789999998764
No 160
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=22.51 E-value=55 Score=30.12 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=16.3
Q ss_pred ecccccCccCCCCcccCCCCCccccCCCCCcccc
Q 001028 1059 YCGICKFFDDERVVYHCPFCNLCRVGRGLGVDFF 1092 (1184)
Q Consensus 1059 ~C~iC~l~dd~k~~yHC~~CgiCRvG~gl~~~~f 1092 (1184)
||-+|- ||| -+|-+.+|||+.|.
T Consensus 26 yCKkCc--------~HC---q~CF~~KGLGIsYg 48 (86)
T 1tac_A 26 HAKKSA--------YHS---QVAFITKGLGISYG 48 (86)
T ss_dssp STTTTT--------TTC---CCSCSSTTSSSSSC
T ss_pred eecchh--------hhh---hHHHccCCCceEec
Confidence 666663 564 56788999998764
No 161
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=22.45 E-value=16 Score=31.98 Aligned_cols=47 Identities=19% Similarity=0.540 Sum_probs=30.9
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHh---hcCCCCCCCCcc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYT---CSHYICPICSKS 1163 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl---~~~~tCPiCrk~ 1163 (1184)
....| ||... .....-+.--.|.--||..|+.--. ...+.||.|+++
T Consensus 18 ~~~~C-iC~~~-~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 18 GLVTC-FCMKP-FAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp TCCCS-TTCCC-CTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred CceEe-ECCCc-CCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCCC
Confidence 45567 99875 3222233334799999999996432 246889999864
No 162
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.36 E-value=34 Score=29.58 Aligned_cols=45 Identities=27% Similarity=0.577 Sum_probs=31.6
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccccCccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDMAVSP 1171 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~m~~y~ 1171 (1184)
....|+.|.+.+... +.+. .-|..||.+|+ +|..|++.+.. ..|+
T Consensus 8 ~~~~C~~C~~~I~~~-~~v~--a~~~~~H~~CF--------~C~~C~~~L~~-~~~~ 52 (76)
T 2cu8_A 8 MASKCPKCDKTVYFA-EKVS--SLGKDWHKFCL--------KCERCSKTLTP-GGHA 52 (76)
T ss_dssp CCCBCTTTCCBCCTT-TEEE--ETTEEEETTTC--------BCSSSCCBCCT-TSCE
T ss_pred CCCCCcCCCCEeECC-eEEE--ECCeEeeCCCC--------CCCCCCCccCC-CceE
Confidence 346799999987633 3344 34788998885 69999999874 3344
No 163
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=22.32 E-value=23 Score=33.82 Aligned_cols=14 Identities=14% Similarity=0.392 Sum_probs=6.4
Q ss_pred CCcccCCCCCcccc
Q 001028 1070 RVVYHCPFCNLCRV 1083 (1184)
Q Consensus 1070 k~~yHC~~CgiCRv 1083 (1184)
-+|+||..||.=-.
T Consensus 52 ~GIW~C~kCg~~~A 65 (103)
T 4a17_Y 52 VGIWKCKPCKKIIA 65 (103)
T ss_dssp TTEEEETTTTEEEE
T ss_pred cceEEcCCCCCEEe
Confidence 34455555544333
No 164
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.96 E-value=44 Score=29.07 Aligned_cols=40 Identities=23% Similarity=0.551 Sum_probs=28.9
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCcccccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGDM 1167 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~m 1167 (1184)
...|+.|.+.+.. +.+..+ |..||..|+ +|-.|++.+.+-
T Consensus 15 ~~~C~~C~~~I~~--~~v~a~--~~~~H~~CF--------~C~~C~~~L~~~ 54 (80)
T 1x3h_A 15 SPKCGGCNRPVLE--NYLSAM--DTVWHPECF--------VCGDCFTSFSTG 54 (80)
T ss_dssp SCBCTTTCCBCCS--SCEEET--TEEECTTTC--------BCSSSCCBSCSS
T ss_pred CCccccCCCeecc--eeEEEC--CCeEecCcC--------ChhhCCCCCCCC
Confidence 4578999888764 334333 788898875 688999998763
No 165
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=21.93 E-value=29 Score=40.20 Aligned_cols=93 Identities=22% Similarity=0.493 Sum_probs=49.6
Q ss_pred cccccccccccCCcccCcccccccCCCCCCccccceeeccccCccccCCCCCCCCCCCCcccceEecccccCccCCCCcc
Q 001028 994 KRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSMAKYYCGICKFFDDERVVY 1073 (1184)
Q Consensus 994 ~r~c~l~~~cC~~~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~q~~~~~C~~~~C~~~~~a~Y~C~iC~l~dd~k~~y 1073 (1184)
+|+....|-+||+. +....||+-. -.+|..|...-. +.--.+|+| -|
T Consensus 46 ~~~~e~~C~~CG~~-------~~~~~HPl~~----v~lC~~Ck~~y~--------------------~~~f~~D~D--G~ 92 (386)
T 2pv0_B 46 QRNIEDICICCGSL-------QVHTQHPLFE----GGICAPCKDKFL--------------------DALFLYDDD--GY 92 (386)
T ss_dssp CCCGGGSBTTTCCS-------CCCSBCSSBS----SBCCHHHHHHHH--------------------TTTTCBCSS--SS
T ss_pred cCcccceeCCCCCc-------CccccCCCcC----cchhhHHHHHHh--------------------ccCcccCCC--CC
Confidence 34455788888874 4466788754 556665543211 111123333 12
Q ss_pred cCCCCCccccCCCCCccccccC--CCc-----ccccccc--ccccccccCccCccccccc
Q 001028 1074 HCPFCNLCRVGRGLGVDFFHCM--TCN-----CCLAKKL--VDHKCREKGLETNCPICCD 1124 (1184)
Q Consensus 1074 HC~~CgiCRvG~gl~~~~fHC~--~C~-----~C~s~~l--~~H~C~e~~~~~~CpICle 1124 (1184)
..+|.+|=-|+ +-+-|+ .|. .|+..++ ..-..+.....=.|-+|.-
T Consensus 93 -~~yCr~C~~Gg----~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 93 -QSYCSICCSGE----TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp -BCSCTTTCCCS----SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred -cccceEcCCCC----eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 24666665552 567777 444 6666665 3333344445667888864
No 166
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=21.93 E-value=29 Score=35.65 Aligned_cols=45 Identities=20% Similarity=0.516 Sum_probs=31.3
Q ss_pred cCcccccccccccCCCceEecCCCCCCChhhHHHHhhc----CCCCCCCCccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCS----HYICPICSKSL 1164 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~----~~tCPiCrk~v 1164 (1184)
+..|.||.+. ++-+.-=.|.-.||..|+.+-+.. ...||.|+..-
T Consensus 4 ~~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 4669999753 232222368899999999776543 46799999764
No 167
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=21.27 E-value=24 Score=30.52 Aligned_cols=38 Identities=32% Similarity=0.734 Sum_probs=22.0
Q ss_pred cccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccc
Q 001028 1118 NCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1184)
Q Consensus 1118 ~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~ 1166 (1184)
.|+.|.+.+... +.+..+ |..||.+|+ +|..|++.+.+
T Consensus 2 ~C~~C~~~I~~~-~~v~a~--~~~~H~~CF--------~C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYFA-ERVTSL--GKDWHRPCL--------KCEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCGG-GEEEET--TEEEETTTC--------BCTTTCCBCCT
T ss_pred cCCCCCCEEECc-eEEEEC--CccccCCCC--------CccccCccCCC
Confidence 366676665422 223333 667777664 57777777654
No 168
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.24 E-value=28 Score=28.91 Aligned_cols=8 Identities=25% Similarity=0.825 Sum_probs=3.2
Q ss_pred cccCCCCC
Q 001028 1072 VYHCPFCN 1079 (1184)
Q Consensus 1072 ~yHC~~Cg 1079 (1184)
.++|+.||
T Consensus 37 R~~C~kCG 44 (50)
T 3j20_Y 37 RWACGKCG 44 (50)
T ss_dssp EEECSSSC
T ss_pred eEECCCCC
Confidence 33444443
No 169
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=21.20 E-value=28 Score=28.29 Aligned_cols=15 Identities=33% Similarity=0.665 Sum_probs=8.3
Q ss_pred ccCCCCcccCCCCCc
Q 001028 1066 FDDERVVYHCPFCNL 1080 (1184)
Q Consensus 1066 ~dd~k~~yHC~~Cgi 1080 (1184)
||.+.+.+.|+.||.
T Consensus 18 ~d~~~gelvC~~CG~ 32 (50)
T 1pft_A 18 YDPERGEIVCAKCGY 32 (50)
T ss_dssp EETTTTEEEESSSCC
T ss_pred EcCCCCeEECcccCC
Confidence 444455566666654
No 170
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=21.11 E-value=81 Score=28.34 Aligned_cols=71 Identities=24% Similarity=0.629 Sum_probs=40.1
Q ss_pred CCCCccccccccCCCccccccccccccccCCcccCcccccccCCCCCCccccceeeccccCccccCCCCCCCCCCCCccc
Q 001028 976 CSPSFRDAEKQVFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLKVQPVGPVCTTLSCSGLSM 1055 (1184)
Q Consensus 976 ~~~~~~~~~~~~~gC~HY~r~c~l~~~cC~~~y~Cr~CHde~~~H~~~r~~~~~~~C~~C~~~q~~~~~C~~~~C~~~~~ 1055 (1184)
.+|+|..+ -|.|-+.+-.-+|+-| .|..|..... ....+.|..|...- -..|..|.=-...-
T Consensus 4 ~~~~~~~~-----~c~~c~~~~~W~C~~C----~C~vC~~~~d-------~~~ll~CD~C~~~y--H~~Cl~PpL~~~P~ 65 (77)
T 3shb_A 4 GSPEFSGP-----SCKHCKDDVNRLCRVC----ACHLCGGRQD-------PDKQLMCDECDMAF--HIYCLDPPLSSVPS 65 (77)
T ss_dssp -----CCC-----SCTTTTTCTTSCCTTT----SBTTTCCCSC-------GGGEEECTTTCCEE--ETTTSSSCCSSCCS
T ss_pred CCcccCCc-----cccccCCCCCCCCCCC----cCCccCCCCC-------CcceeEeCCCCCcc--CcccCCCcccCCCC
Confidence 44555533 6999988888888888 3888876532 13578888887532 23444321112334
Q ss_pred ce-Eeccccc
Q 001028 1056 AK-YYCGICK 1064 (1184)
Q Consensus 1056 a~-Y~C~iC~ 1064 (1184)
+. +||..|+
T Consensus 66 g~~W~C~~C~ 75 (77)
T 3shb_A 66 EDEWYCPECR 75 (77)
T ss_dssp SSCCCCTTTC
T ss_pred CCceECcCcc
Confidence 44 6777664
No 171
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.90 E-value=55 Score=30.75 Aligned_cols=10 Identities=40% Similarity=1.042 Sum_probs=5.1
Q ss_pred CCCCCCcccc
Q 001028 1156 ICPICSKSLG 1165 (1184)
Q Consensus 1156 tCPiCrk~v~ 1165 (1184)
+|-.|++.+.
T Consensus 32 ~C~~C~~~L~ 41 (114)
T 1j2o_A 32 SCDLCGCRLG 41 (114)
T ss_dssp CCSSSCSCCC
T ss_pred cccccCCchh
Confidence 4555555554
No 172
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=20.74 E-value=55 Score=37.70 Aligned_cols=47 Identities=19% Similarity=0.569 Sum_probs=30.9
Q ss_pred cCcccccccccccCCCceEecCCCCC--CChhhHHHHhh--cCCCCCCCCcccc
Q 001028 1116 ETNCPICCDFLFTSSATVRALPCGHF--MHSDCFQAYTC--SHYICPICSKSLG 1165 (1184)
Q Consensus 1116 ~~~CpICle~lf~s~~~v~~LpCGH~--fH~~Ci~~wl~--~~~tCPiCrk~v~ 1165 (1184)
.-.|||=...| ..+++...|.|. |-..=|-++.. ....||+|.+.+.
T Consensus 249 SL~CPlS~~ri---~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRM---KYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBC---SSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCccccc---cccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 46799877664 357888899976 33333333322 3567999999874
No 173
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.60 E-value=27 Score=32.10 Aligned_cols=8 Identities=25% Similarity=1.178 Sum_probs=3.8
Q ss_pred ccccCCCc
Q 001028 1091 FFHCMTCN 1098 (1184)
Q Consensus 1091 ~fHC~~C~ 1098 (1184)
..||.+|+
T Consensus 53 IW~C~kCg 60 (83)
T 3j21_i 53 IWQCQKCG 60 (83)
T ss_dssp EEEETTTC
T ss_pred eEEcCCCC
Confidence 44555544
No 174
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.55 E-value=50 Score=28.70 Aligned_cols=40 Identities=23% Similarity=0.553 Sum_probs=28.7
Q ss_pred ccCcccccccccccCCCceEecCCCCCCChhhHHHHhhcCCCCCCCCccccc
Q 001028 1115 LETNCPICCDFLFTSSATVRALPCGHFMHSDCFQAYTCSHYICPICSKSLGD 1166 (1184)
Q Consensus 1115 ~~~~CpICle~lf~s~~~v~~LpCGH~fH~~Ci~~wl~~~~tCPiCrk~v~~ 1166 (1184)
....|+.|.+.+.. ..+. .=|..||.+|+ +|-.|++.+..
T Consensus 14 ~~~~C~~C~~~I~~--~~v~--a~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 2cuq_A 14 FAPRCARCSKTLTQ--GGVT--YRDQPWHRECL--------VCTGCQTPLAG 53 (80)
T ss_dssp SSCCCTTTCCCCCS--CCEE--SSSSEECTTTC--------BCSSSCCBCTT
T ss_pred cCCcCCCCCCEecC--cEEE--ECCchhhhhhC--------CcccCCCcCCC
Confidence 34679999988653 2233 44889999885 78899999853
No 175
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=20.37 E-value=15 Score=27.30 Aligned_cols=16 Identities=31% Similarity=0.773 Sum_probs=12.3
Q ss_pred CCCCCCCCccccccCc
Q 001028 1154 HYICPICSKSLGDMAV 1169 (1184)
Q Consensus 1154 ~~tCPiCrk~v~~m~~ 1169 (1184)
.++||+|+..+.|+..
T Consensus 3 k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CEECTTSSCEESSHHH
T ss_pred cccCccccccCcChHH
Confidence 5679999988887643
Done!