Query 001029
Match_columns 1183
No_of_seqs 155 out of 496
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 13:50:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001029.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001029hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1410 Nuclear transport rece 100.0 3E-149 6E-154 1240.9 77.4 1028 33-1181 5-1068(1082)
2 COG5101 CRM1 Importin beta-rel 100.0 4.7E-74 1E-78 636.1 61.4 939 22-1179 10-1031(1053)
3 KOG4541 Nuclear transport rece 100.0 2.9E-66 6.4E-71 567.9 38.7 683 448-1183 3-748 (748)
4 KOG2020 Nuclear transport rece 100.0 9.4E-46 2E-50 455.0 53.7 809 48-1053 29-892 (1041)
5 KOG2022 Nuclear transport rece 100.0 5E-27 1.1E-31 273.9 74.8 922 31-1180 5-978 (982)
6 PF08767 CRM1_C: CRM1 C termin 99.8 4.1E-20 8.8E-25 208.9 22.0 279 854-1179 3-317 (319)
7 KOG2021 Nuclear mRNA export fa 99.8 2.2E-13 4.7E-18 157.5 61.2 245 33-346 3-262 (980)
8 KOG4541 Nuclear transport rece 99.7 2.2E-14 4.7E-19 160.2 29.7 513 291-865 2-531 (748)
9 KOG2023 Nuclear transport rece 99.6 9.3E-10 2E-14 126.5 50.1 581 22-842 6-597 (885)
10 KOG2171 Karyopherin (importin) 99.5 1.8E-08 3.9E-13 124.2 62.0 147 33-187 4-152 (1075)
11 KOG2081 Nuclear transport regu 99.2 3.1E-08 6.8E-13 113.8 34.9 337 49-495 2-341 (559)
12 KOG1991 Nuclear transport rece 99.1 0.00016 3.4E-09 88.7 67.6 148 23-185 1-159 (1010)
13 PF08389 Xpo1: Exportin 1-like 99.0 5E-09 1.1E-13 106.0 13.1 148 123-339 1-148 (148)
14 KOG1241 Karyopherin (importin) 98.8 0.00033 7.2E-09 83.4 47.5 138 43-187 11-164 (859)
15 PF03810 IBN_N: Importin-beta 98.6 2.4E-07 5.2E-12 82.2 8.2 66 51-116 1-76 (77)
16 KOG1993 Nuclear transport rece 98.1 6.7E-05 1.4E-09 89.3 17.1 170 31-224 2-183 (978)
17 COG5656 SXM1 Importin, protein 97.8 0.18 3.8E-06 60.8 52.8 140 40-184 11-157 (970)
18 KOG1992 Nuclear export recepto 97.4 0.73 1.6E-05 56.6 58.7 163 48-224 22-194 (960)
19 COG5215 KAP95 Karyopherin (imp 96.9 1.4 3E-05 51.9 49.3 106 48-161 22-142 (858)
20 COG5657 CSE1 CAS/CSE protein i 96.9 0.055 1.2E-06 66.7 19.8 145 31-186 6-156 (947)
21 KOG2274 Predicted importin 9 [ 96.4 4.3 9.3E-05 50.7 48.9 142 30-184 5-159 (1005)
22 KOG1020 Sister chromatid cohes 64.4 5.3E+02 0.011 35.4 21.2 215 698-952 814-1038(1692)
23 KOG2171 Karyopherin (importin) 51.8 7.2E+02 0.016 33.1 37.6 61 988-1052 361-421 (1075)
24 cd00197 VHS_ENTH_ANTH VHS, ENT 51.5 1.5E+02 0.0033 28.0 10.4 88 46-135 16-111 (115)
25 PF12348 CLASP_N: CLASP N term 44.2 3.2E+02 0.007 29.2 12.9 131 993-1150 25-161 (228)
26 PF10521 DUF2454: Protein of u 43.1 3.4E+02 0.0073 30.5 13.0 97 137-254 107-203 (282)
27 PF11864 DUF3384: Domain of un 40.2 7.5E+02 0.016 30.0 23.6 137 867-1049 147-285 (464)
28 cd03567 VHS_GGA VHS domain fam 40.2 3.8E+02 0.0083 26.6 11.3 63 75-144 49-116 (139)
29 PF08623 TIP120: TATA-binding 40.0 82 0.0018 32.3 6.7 56 989-1051 41-96 (169)
30 KOG1248 Uncharacterized conser 39.4 1.1E+03 0.024 31.6 23.6 60 989-1048 752-813 (1176)
31 COG1698 Uncharacterized protei 37.5 1.3E+02 0.0028 27.1 6.4 74 17-90 4-83 (93)
32 KOG0368 Acetyl-CoA carboxylase 37.0 7.1E+02 0.015 34.2 15.3 153 989-1174 839-992 (2196)
33 PF13646 HEAT_2: HEAT repeats; 36.6 1.6E+02 0.0035 25.9 7.6 79 40-134 6-87 (88)
34 PF00790 VHS: VHS domain; Int 35.8 1.4E+02 0.0031 29.5 7.7 98 35-134 10-113 (140)
35 PF13513 HEAT_EZ: HEAT-like re 35.1 86 0.0019 25.1 5.0 55 989-1047 1-55 (55)
36 PF03378 CAS_CSE1: CAS/CSE pro 34.6 7E+02 0.015 30.0 14.4 153 769-951 45-215 (435)
37 PLN03076 ARF guanine nucleotid 34.3 1.6E+03 0.036 32.2 22.4 102 77-187 1150-1258(1780)
38 cd03561 VHS VHS domain family; 34.0 3.7E+02 0.0081 26.3 10.2 57 75-134 48-107 (133)
39 KOG1062 Vesicle coat complex A 33.7 8.5E+02 0.018 31.2 14.8 93 74-183 117-209 (866)
40 KOG1062 Vesicle coat complex A 33.4 4.7E+02 0.01 33.3 12.6 180 983-1176 212-397 (866)
41 PF02985 HEAT: HEAT repeat; I 33.4 71 0.0015 22.4 3.6 30 1021-1050 1-30 (31)
42 PF01602 Adaptin_N: Adaptin N 31.4 3.2E+02 0.007 33.5 11.7 90 74-180 89-179 (526)
43 PF08506 Cse1: Cse1; InterPro 30.3 9.5E+02 0.021 28.2 20.3 101 930-1043 268-369 (370)
44 cd00020 ARM Armadillo/beta-cat 29.9 2.1E+02 0.0046 26.5 7.7 107 64-181 8-119 (120)
45 cd03568 VHS_STAM VHS domain fa 29.2 4.6E+02 0.01 26.2 9.9 57 75-134 48-105 (144)
46 PF06738 DUF1212: Protein of u 29.1 5.8E+02 0.013 26.5 11.5 106 20-137 59-165 (193)
47 cd03565 VHS_Tom1 VHS domain fa 28.9 4.2E+02 0.0092 26.3 9.6 60 73-134 48-110 (141)
48 PF08167 RIX1: rRNA processing 27.7 5.2E+02 0.011 26.3 10.4 107 74-187 35-148 (165)
49 PF13251 DUF4042: Domain of un 27.0 5.7E+02 0.012 26.7 10.4 165 126-349 2-179 (182)
50 cd03569 VHS_Hrs_Vps27p VHS dom 26.3 5.7E+02 0.012 25.4 10.0 58 75-134 52-109 (142)
51 PF12717 Cnd1: non-SMC mitotic 25.7 7.5E+02 0.016 25.4 13.5 53 989-1049 2-54 (178)
52 smart00288 VHS Domain present 24.5 6.4E+02 0.014 24.7 9.9 57 75-134 48-106 (133)
53 PF12783 Sec7_N: Guanine nucle 24.0 7.1E+02 0.015 25.2 10.7 60 996-1055 43-108 (168)
54 PF12460 MMS19_C: RNAPII trans 23.6 1.3E+03 0.028 27.4 17.7 157 73-257 199-355 (415)
55 PF08167 RIX1: rRNA processing 22.1 3.6E+02 0.0079 27.5 8.0 117 989-1127 39-156 (165)
56 PF12333 Ipi1_N: Rix1 complex 22.1 1.4E+02 0.003 27.9 4.4 35 1017-1051 8-42 (102)
57 PF03224 V-ATPase_H_N: V-ATPas 20.6 1.3E+03 0.027 26.2 14.8 85 53-139 93-179 (312)
58 KOG1087 Cytosolic sorting prot 20.3 5.5E+02 0.012 31.1 9.9 97 34-134 5-107 (470)
No 1
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-149 Score=1240.86 Aligned_cols=1028 Identities=19% Similarity=0.282 Sum_probs=895.4
Q ss_pred HHHHHHHHHhhCCCC---HHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHH
Q 001029 33 HSIEIACSSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIG 109 (1183)
Q Consensus 33 ~~le~~~~~l~~~~~---r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~ 109 (1183)
++||.+|+.+|.+.| |.+||+.|.+|..+|+++++|+.+|++++.||.++.|++.|.+.+.++- .+|.++|.+||+
T Consensus 5 aqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~pYs~mlAst~L~Klvs~~t-~lpl~qrldir~ 83 (1082)
T KOG1410|consen 5 AQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSYPYSQMLASTCLMKLVSRKT-PLPLEQRLDIRN 83 (1082)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCC-CCcHHHHHHHHH
Confidence 789999999999876 7999999999999999999999999999999999999999999999984 799999999999
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCC--hhHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhCCC
Q 001029 110 FCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSD--KEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPS 187 (1183)
Q Consensus 110 ~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~lv~E~s~~ 187 (1183)
|+++|+..++|.+++||...+++++|+|+|.||+|....+ -.+.+.++.++++. ++.+||++|+.||+.+++||+..
T Consensus 84 Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~-~~ve~~~igv~iLsqLvqemN~~ 162 (1082)
T KOG1410|consen 84 YILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQM-DNVEHCIIGVQILSQLVQEMNQA 162 (1082)
T ss_pred HHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhcc-CchHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999964322 13567777788874 46899999999999999999998
Q ss_pred CcCCCCCcHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCccc
Q 001029 188 TSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKIS 267 (1183)
Q Consensus 188 ~ss~~~l~~~~h~k~~~~F~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~~~~~~ 267 (1183)
+.+.+..+|||...+|||+.|.+||.+++.+|+........ +.....++.++|++..+||+|||+|+..||+
T Consensus 163 ---~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nln---d~~q~~L~~~vL~L~l~Cl~FDfiGss~DEs-- 234 (1082)
T KOG1410|consen 163 ---DGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLN---DRAQLGLLMQVLKLNLNCLNFDFIGSSTDES-- 234 (1082)
T ss_pred ---CCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcc---cHhHhhHHHHHHHHHhhhccccccccccccc--
Confidence 66899999999999999999999999999999887621111 1124578999999999999999999999998
Q ss_pred cccccccccccccCCCccccccccCCcchHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHhccc
Q 001029 268 INVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTG 347 (1183)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~l~llf~~~~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~ 347 (1183)
+||..++++|.+||..|.|++++++||++|..++ |+++..++.||+|+||+|+
T Consensus 235 ----------------sed~ctVQIPTsWRs~f~d~stlqlfFdly~slp-----------~~~S~~alsclvqlASvRR 287 (1082)
T KOG1410|consen 235 ----------------SEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLP-----------PELSELALSCLVQLASVRR 287 (1082)
T ss_pred ----------------cccccceecCcHHHHHhcCchHHHHHHHHhccCC-----------chhhHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999998755 5689999999999999999
Q ss_pred CcccCCChhhHHHHHHHHHHhhhhhcCChhhHHHHhhhCC-ChhhHHHHHHHHHHHHhhcChhhHHhhhhccCcchhHHH
Q 001029 348 TVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGK-SESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTL 426 (1183)
Q Consensus 348 ~~f~~~~~~~r~~~l~~~l~~~~~il~~~~~~~~~~~~g~-~~~~~~~~cr~l~~L~~~~~~~~l~~~~~~~~~~~~l~~ 426 (1183)
++|++.+ |.+|+.+++.|+..|+++| +|+ ++.+||+|||+|.||++|+ |.+++..
T Consensus 288 sLFN~ae---Ra~yl~~Lv~Gvk~il~np--------~~LsD~~nyHeFCRllaRlktNY-------------QL~ELv~ 343 (1082)
T KOG1410|consen 288 SLFNGAE---RAKYLQHLVEGVKRILENP--------QGLSDPANYHEFCRLLARLKTNY-------------QLGELVK 343 (1082)
T ss_pred HHhCCHH---HHHHHHHHHHHHHHHHhCC--------cCCCCcchHHHHHHHHHHHHhhh-------------hhHhhhc
Confidence 9997666 8999999999999999874 456 6699999999999997775 4555554
Q ss_pred HHHHH---HHHHHHHhhcccccccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHHHHHHHhcccccccccc
Q 001029 427 LSNLM---CEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASA 503 (1183)
Q Consensus 427 l~~l~---~~~~~~~~~~~~~~~~~~~es~~~lL~~W~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~yi~srl~~~~~~~ 503 (1183)
++. + +..+..|++.+...|+|+.+|.+++|..|.+|+.++||++ ...|+.+..++++|..+||.||+...+...
T Consensus 344 v~~-Y~e~irLiAeFTv~SLq~wefa~nSvyyLlt~WqRmvaSVPyvk--~~~phlLd~y~PeIt~afi~SRl~sV~~iv 420 (1082)
T KOG1410|consen 344 VEC-YPEVIRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRMVASVPYVK--NTEPHLLDTYCPEITKAFITSRLQSVEIIV 420 (1082)
T ss_pred cCC-cHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhcCCccc--CCChHHHhhhcHHHHHHHHHHHhhhhheec
Confidence 443 3 3344566777778899999999999999999999999965 557888889999999999999999877654
Q ss_pred cCCCCccchhhccHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhcc--cCCCCc-c-hhHH-HHHHHHHHHHh
Q 001029 504 MDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQG--RGMIDP-T-ETLE-ELYSLLLITGH 578 (1183)
Q Consensus 504 ~~e~d~~e~~~~d~~~~~eqLe~i~~L~R~~~~~t~~~L~~ll~~~~~~l~~~--~~~~~~-~-~~~E-~L~Wli~i~g~ 578 (1183)
.|+ -|++.||.....+|||.++++||+.|+.|+.+|.++|++..+.|.+. .++.+. + .+.| +|.|+|+|+|.
T Consensus 421 --rd~-~d~PLdd~~~~~q~le~l~~icRceYEkTc~llvq~fdq~aqsyqe~~~~~s~~~~d~ai~EgrL~Wlv~lvgt 497 (1082)
T KOG1410|consen 421 --RDG-LDDPLDDTGAVQQQLEQLATICRCEYEKTCALLVQLFDQNAQSYQELLQNGSANDADIAIQEGRLVWLVYLVGT 497 (1082)
T ss_pred --ccC-CCCcchhhHHHHHHHHHhhhhhhhhHhhHHHHHHHHHhhhHHHHHHHhcccCCCchhHHHHhhhhhhhHHHhHH
Confidence 232 45677778888999999999999999999999999999999888654 232222 2 4555 99999999999
Q ss_pred HhccCCCCCccCChhhhhhhhhhhhcccCch--HHHHHHHHHHH---HhhhcCcccccccCCHHHHHHHHHHHHHHHHhh
Q 001029 579 VLADEGEGEIPVVPNAIQTHFVDTIEAAKHP--VVLLCGSIIKF---AEWSLDPEARASVFSPRLMEAIVWFLARWSQTY 653 (1183)
Q Consensus 579 ~l~d~~~ge~~~iP~~i~~~~~~~~~~~~~~--vv~Li~~ll~l---~~~~l~~~~~~~~~Sp~l~~~~l~fl~~~~~~Y 653 (1183)
+++++..+- +.+++. --+|+..++++ .+.++. .....+++.+++||+.+|+++|
T Consensus 498 vV~gk~t~~----------------Std~~d~mDgEL~arvlql~nlmdsr~~-----~~~n~rle~ail~f~eqFRk~Y 556 (1082)
T KOG1410|consen 498 VVGGKTTAT----------------STDEHDAMDGELSARVLQLVNLMDSRLP-----LKGNERLELAILHFLEQFRKAY 556 (1082)
T ss_pred Hhcceeccc----------------ccchhhhhhhHHHHHHHHHHHhhhcccc-----hhhhHHHHHHHHHHHHHHHHHH
Confidence 999875321 112222 12455444444 333331 2256789999999999999999
Q ss_pred cCCcccccccCCCCCCCCCccccchhhHhHHHHhhcCCCCchhHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhc
Q 001029 654 LMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRR 733 (1183)
Q Consensus 654 L~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~f~~~~~g~~~l~~ll~~~~~~L~~~~~e~~v~~~~~~~LL~~l~~~ 733 (1183)
++ |.. ..+++|+.++.+.+|. ++...+++.|+.||.+||+.|+..++|++.++ +||..|+.+
T Consensus 557 vg---DQ~-------------~rsSkvY~rl~e~Lgi-~de~~~L~viv~KI~TNLK~w~~~e~vi~~tL-slf~dLs~G 618 (1082)
T KOG1410|consen 557 VG---DQI-------------QRSSKVYARLSEVLGI-TDESDVLGVIVGKILTNLKYWGRNEPVISLTL-SLFNDLSLG 618 (1082)
T ss_pred HH---HHH-------------HHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhhcccccCCchHHHHHH-HHHHHHhhh
Confidence 98 544 3456799999999997 67789999999999999999999999999999 899999999
Q ss_pred cccchhhhcchhHHHHHHHhhcchhhhcccc------hhhHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHhhC
Q 001029 734 KNVCVHLVALGSWRELASAFANDKTLILLNS------TNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSG 807 (1183)
Q Consensus 734 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~------~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~m~pl~~~~~~l~~ 807 (1183)
++..+.|+++|.++.+++||.+++++|.-+. ..|++||.++++++. .|-.+.+..|++||.|++..|..+++
T Consensus 619 Y~~~kkL~kl~~VqfmlnNHT~ehF~FLg~~~~~~~~r~RTTFY~al~rLl~--~d~sede~~fe~fm~PLt~~fe~v~~ 696 (1082)
T KOG1410|consen 619 YSAVKKLVKLDAVQFMLNNHTSEHFPFLGINIDLQDMRCRTTFYTALTRLLM--VDLSEDEDMFERFMLPLTDAFEGVLQ 696 (1082)
T ss_pred HHHHHHHhcchhhhhHhcccchhhCcccccCccchhhhhHhHHHHHHHHHHh--hcccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998775443 356789999999875 34556677899999999999998887
Q ss_pred CCcccccccchhHHHHHHHHHHHhhhhhhccCCC-cHHHHHHHHHhh-HHHHHHHHHHhcCChHHHHHHHHHHHHHhhcc
Q 001029 808 KNDLKNVSQQPDIILLVSCLLERLRGAANATEPR-TQKAIYEMGFSV-MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQ 885 (1183)
Q Consensus 808 ~~~~~~~~~~~~ii~~v~~ll~~l~Gi~~a~~~~-~~~~l~~~l~~~-~~~~~~ll~~y~~~~~v~~~iL~~~~e~v~~~ 885 (1183)
..+. +...+++++..++|++|||||||.|.+++ ++.++|+|+||. +|++...++.|.++|++++|||||++|+|+|+
T Consensus 697 ~~~n-n~f~ee~vK~~liGL~RDLRGiA~A~~tktsy~~LFdWmYP~~mpllq~~Ve~W~~~p~vtTPiLklmaE~v~Nr 775 (1082)
T KOG1410|consen 697 VFQN-NCFEEEQVKRILIGLCRDLRGIAFASNTKTSYQMLFDWMYPEYMPLLQRAVEKWYGCPDVTTPILKLMAELVQNR 775 (1082)
T ss_pred Hhcc-ccccHHHHHHHHHHHHHHhhhhhhhhccchHHHHHHHHhhhhHHHHHHHHHHhcCCCCccccHHHHHHHHHHhhh
Confidence 6543 24677889999999999999999999977 889999999999 99999999999999999999999999999999
Q ss_pred cccccc----chhhhHHHHHHHHHHHhhhcccCcccccccccccccchhhhhhhHHHHHHHHHHhhcCCCcccCC-cccc
Q 001029 886 ISYLEV----QETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSS-DSIE 960 (1183)
Q Consensus 886 ~~~l~~----~~~~~lf~~~~~ll~~y~~~~~~~~~~~~~~~~~~~~~~e~~k~l~~~l~lL~~~l~~~~~~f~~-~~~~ 960 (1183)
.+|+.| |+++.|||++++++..|++ .++..++..+...|++|||+|.+++.+|+++++|+|+|||+ ++||
T Consensus 776 sQRL~Fd~SSpngiLLFrEtSKmv~~YG~-----riL~Lp~vskdqiY~~kyKgI~v~~siLk~AL~GnYv~FGVFrLYG 850 (1082)
T KOG1410|consen 776 SQRLKFDVSSPNGILLFRETSKMVSIYGN-----RILQLPEVSKDQIYAEKYKGISVCFSILKNALSGNYVNFGVFRLYG 850 (1082)
T ss_pred HhheecccCCCceeEEehhhhHHHHHHhh-----HhhcccCcchhhhHHHHhcCceehHHHHHHHhhcCccccceeeeeC
Confidence 999988 5789999999999999975 45666666677899999999999999999999999999999 9999
Q ss_pred ccccchhHHHHHhhhccccccccccccchhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHH
Q 001029 961 AQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMC 1040 (1183)
Q Consensus 961 d~~~~~~~v~~~~l~~~iPli~~dll~yPkl~~~ff~Ll~~l~~~~~~~l~~L~~~~f~~ll~sl~~Gl~~~d~~I~~~~ 1040 (1183)
|++++.+.-.|.+|.+.||. .|+++|||+.++||.|++.+++.|+.++.+|+++.|..++.||..|+++.|+-|+..|
T Consensus 851 D~~l~daL~~fvKm~lsIp~--sD~l~Y~Klsqsyy~llE~l~qdhm~Fi~nL~~~vfm~ll~Si~sGLt~lDt~v~ssc 928 (1082)
T KOG1410|consen 851 DSALDDALQTFVKMLLSIPH--SDLLSYRKLSQSYYNLLEVLTQDHMPFITNLEPDVFMYLLRSISSGLTSLDTIVSSSC 928 (1082)
T ss_pred chHHHHHHHHHHHHHhcCCH--HHHHhHHHHHHHHhhHHHHHHhccchhhhcCcHHHHHHHHHHHHhccchhhHHHHhHH
Confidence 99999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCccchhhhhccCCCC----CCCchhHHHHHHHHHHHHHHhccCCCchhHHHhhhHHHHHhcC
Q 001029 1041 LRALRALASYHYKETGAGKVGLAAQAAGINNSN----GNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCE 1116 (1183)
Q Consensus 1041 l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~~~ 1116 (1183)
|.++|.+++|++++..++.+......+++++.. .+.+|++++++++.+++.++||+|.+|| ++|||+++||+.+
T Consensus 929 csslD~i~tYlfk~itr~~~p~~~~~~tpa~~r~l~~i~q~Pdil~qml~tl~~ii~Fedc~nQW--SlSRPlLgLILi~ 1006 (1082)
T KOG1410|consen 929 CSSLDTIVTYLFKRITRSTKPTRKVGMTPAGDRFLHAIQQHPDILQQMLSTLINIIMFEDCRNQW--SLSRPLLGLILIN 1006 (1082)
T ss_pred HHHHHHHHHHHHHHHhccCCCcCcCCCChhHHHHHHHHHhChHHHHHHHHHHHHHHhHHhhcccc--cccchhhHHHhhh
Confidence 999999999999998765443222112222211 2667999999999999999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHhhhccc
Q 001029 1117 PRLYQRLGSELIERQANPPFKSRLANALQSLTSSNQLSSSLDRVNYQRFRKNLTNFLIEVRGFLR 1181 (1183)
Q Consensus 1117 ~~~f~~~~~~li~~q~~~~~~~~l~~~F~~L~~~~~~~~~l~~~nr~~F~~~l~~F~~~vr~~L~ 1181 (1183)
+++|..+..+++++|| +++++++..+|.+||.+ ++.|++.||||+|++|+..|+++++.-|+
T Consensus 1007 E~~fSdlk~~l~ssQp-~dkqq~l~~cF~~LM~~--ve~nL~~KNrD~FTQNLt~FRrdv~~~lk 1068 (1082)
T KOG1410|consen 1007 EKYFSDLKASLTSSQP-YDKQQDLDMCFTNLMEG--VERNLTVKNRDRFTQNLTRFRRDVALVLK 1068 (1082)
T ss_pred HHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHHH--HhhcccccchhHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998 89999999999999997 66899999999999999999999987665
No 2
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=4.7e-74 Score=636.07 Aligned_cols=939 Identities=12% Similarity=0.149 Sum_probs=672.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCcC
Q 001029 22 PADLAKLQSIMHSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFL 99 (1183)
Q Consensus 22 ~~d~~~l~~~~~~le~~~~~l~~~~~--r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l 99 (1183)
..|++.||+++..+ |.|.+ ++|||++|+.|++.|++|.++.+||++|++|..+|.|+++|.+.|+++|+.+
T Consensus 10 dLdiallDkVVttf-------yqg~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~pqskyiALs~LdklIttkWkll 82 (1053)
T COG5101 10 DLDIALLDKVVTTF-------YQGDGRKQEQAQRILTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKWKLL 82 (1053)
T ss_pred ccCHHHHHHHHHHh-------cCCCchhHHHHHHHHHHHHhCchHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhhhhC
Confidence 35667777666665 55655 4889999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhccCCC-----chHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccC-CChhhHHHH
Q 001029 100 TADEKKSLIGFCLCFVMQHASSP-----EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGI-HGVDTQFIG 173 (1183)
Q Consensus 100 ~~~~k~~lr~~ll~~l~~~~~~~-----~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 173 (1183)
|.++|.+||+|+++.+++++.+. .+++.+++..+++.|+|++||. .|++|++++++..+.+ .-.++.++.
T Consensus 83 p~~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~----nWP~FIpeli~~S~~s~~vCeNnmiv 158 (1053)
T COG5101 83 PEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPR----NWPTFIPELINVSQISMEVCENNMIV 158 (1053)
T ss_pred CcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhccc----ccchhhHHHHhhccchHHHHhccHHH
Confidence 99999999999999999998553 6899999999999999999988 6999999999987642 113455899
Q ss_pred HHHHHHHHhhhCCCCcCCCCCcHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHc
Q 001029 174 INFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQIL 253 (1183)
Q Consensus 174 l~lL~~lv~E~s~~~ss~~~l~~~~h~k~~~~F~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~L 253 (1183)
|++|++.|++||.. .++..+.+..|.++..+ ++.||++|-++|+... ++++++++|+.+..+|
T Consensus 159 LklLsEEvFdfSae-----qmTq~k~~~LkNqm~~E-F~qIF~lc~qiLE~~~-----------~~SLi~ATLesllrfl 221 (1053)
T COG5101 159 LKLLSEEVFDFSAE-----QMTQVKKRLLKNQMKIE-FPQIFGLCKQILEYSR-----------DESLIEATLESLLRFL 221 (1053)
T ss_pred HHHhHHHHHhccHH-----HHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHHH
Confidence 99999999999988 44555555557777775 9999999999998754 6689999999999999
Q ss_pred ccccccCCCCCccccccccccccccccCCCccccccccCCcchHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhHH
Q 001029 254 NWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAV 333 (1183)
Q Consensus 254 sw~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~l~llf~~~~~~~~~~~~~~~~~~~~l~~ 333 (1183)
.|.+.++ +..+++++++...+... |+.+.
T Consensus 222 ~wiPl~y---------------------------------------IfeTnIieLv~~~f~s~------------pd~r~ 250 (1053)
T COG5101 222 EWIPLDY---------------------------------------IFETNIIELVLEHFNSM------------PDTRV 250 (1053)
T ss_pred hhCchhH---------------------------------------HHHHHHHHHHHHHhccC------------CchhH
Confidence 9999887 66788999998877652 45789
Q ss_pred HHHHHHHHHHhcccC-cccCCChhhHHHHHHHHHHhhh-hhcCChhhHHHHhhhCC-ChhhH-HHHHHHHHHHHhhcChh
Q 001029 334 SARKLIVQLCSLTGT-VFPSDNGKMQEHHLLQLLSGIL-EWVDPPDVVAQAIESGK-SESEM-LDGCRALLSIATVTTPF 409 (1183)
Q Consensus 334 ~~l~cL~qLasl~~~-~f~~~~~~~r~~~l~~~l~~~~-~il~~~~~~~~~~~~g~-~~~~~-~~~cr~l~~L~~~~~~~ 409 (1183)
.+++||+++++|.+. .-+...++.-.-++++++.... ..++..+.+.+.++... +++.+ ..++..|+.+...+-
T Consensus 251 ~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s~~~~~~-- 328 (1053)
T COG5101 251 ATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSSLYEVYI-- 328 (1053)
T ss_pred HHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHHHHHHHH--
Confidence 999999999999752 2222221222334455554443 34555566666665332 33333 345555555543321
Q ss_pred hHHhhhhccCcchhHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhcc-------cccCCC---------
Q 001029 410 VFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSL-------DSTGRN--------- 473 (1183)
Q Consensus 410 ~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~es~~~lL~~W~~l~~~~-------~~~~~~--------- 473 (1183)
+++++. +..+.+...+-+...+ +.+++ .|.|+.+|++|+.++.++ |....+
T Consensus 329 ---~lLE~~------e~~e~llnah~YLiqi-SrIne---reiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s 395 (1053)
T COG5101 329 ---SLLEAR------EMAENLLNAHGYLIQI-SRINE---REIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGS 395 (1053)
T ss_pred ---HHhcCh------hHHHHHHHHHHHhhhh-hhccH---HHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccc
Confidence 222221 1111222233333322 44555 899999999999999764 111100
Q ss_pred ---CCCChhhh--hhHHHHHHH-------HHhcccccccccccCCCCccch------hhccHHHHHHHHHHHHHHhhhch
Q 001029 474 ---VVLPLEVR--NAAASLFAL-------IVESELKVASASAMDDNGEFNY------LQASISAMDERLSSYALIARAAI 535 (1183)
Q Consensus 474 ---~~~~~~~~--~~~~~I~~~-------yi~srl~~~~~~~~~e~d~~e~------~~~d~~~~~eqLe~i~~L~R~~~ 535 (1183)
+..|..+. .....+|.. -+..+|.+|+++...++|++|. +.|..+.|+.+++++.+|++++.
T Consensus 396 ~~istnpn~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEVliVendegEivRefvketDtI~lYksmRevLvyLthL~v 475 (1053)
T COG5101 396 QAISTNPNQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKETDTIELYKSMREVLVYLTHLIV 475 (1053)
T ss_pred hhccCCcchhcccchHHHHHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhhhhh
Confidence 01121110 122344432 3667899999987777777764 24566899999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhcccCCCCcc-hhHHHHHHHHH-HHHhHhccCCCCCccCChhhhhhhhhhhhcccCchHHHH
Q 001029 536 DATVPLLTRLFSERFARLHQGRGMIDPT-ETLEELYSLLL-ITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLL 613 (1183)
Q Consensus 536 ~~t~~~L~~ll~~~~~~l~~~~~~~~~~-~~~E~L~Wli~-i~g~~l~d~~~ge~~~iP~~i~~~~~~~~~~~~~~vv~L 613 (1183)
.||..++...+.-.. .| .+|+ ..++.|||+|+ |+|++-. ..+...+|.+
T Consensus 476 ~Dte~~mi~Klarq~------dg-~EWsw~nlNtLcWAIGSISGamsE----------------------~~EkrF~Vnv 526 (1053)
T COG5101 476 DDTEKYMIGKLARQL------DG-KEWSWNNLNTLCWAIGSISGAMSE----------------------VNEKRFFVNV 526 (1053)
T ss_pred hhHHHHHHHHHHHHh------cC-CccchhhHhHHHHHHhcccchhhh----------------------HHHHHHHHHH
Confidence 999999998887544 33 5777 78899999997 8888742 1234668999
Q ss_pred HHHHHHHHhhhcCcccccccCCHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCccccchhhHhHHHHhhcCCCC
Q 001029 614 CGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQ 693 (1183)
Q Consensus 614 i~~ll~l~~~~l~~~~~~~~~Sp~l~~~~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~f~~~~~ 693 (1183)
+..++.+|+...++.++++ +++++||.+|+|++ || .++ |.++++|+++|+++||+++.
T Consensus 527 iKdLL~LcemKrgKdnKAV-----vASnIMyvvGQYpR-FL----kah------------w~FLkTVv~KLFEFMhE~HE 584 (1053)
T COG5101 527 IKDLLALCEMKRGKDNKAV-----VASNIMYVVGQYPR-FL----KAH------------WSFLKTVVKKLFEFMHEDHE 584 (1053)
T ss_pred HHHHHHHHHHhhcCCcchh-----hecceeeeeccchH-HH----HHH------------HHHHHHHHHHHHHHHhhhhh
Confidence 9999999998888888877 88999999999997 88 566 89999999999999999999
Q ss_pred c--hhHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhccccchhhhcchhHHHHHHHhhcchhhhcccchhhHHHH
Q 001029 694 G--KPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLA 771 (1183)
Q Consensus 694 g--~~~l~~ll~~~~~~L~~~~~e~~v~~~~~~~LL~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~ 771 (1183)
| +|+||+|++++.+|..+|-...+ . -..|++..++.+... +--.|.|.+++++|
T Consensus 585 GvqDMACDtFiKIvqKC~~hFv~Qq~-----g-----------------esEpFI~~Iirnl~k--tT~dL~pqQ~htfY 640 (1053)
T COG5101 585 GVQDMACDTFIKIVQKCPVHFVTQQE-----G-----------------ESEPFIVYIIRNLPK--TTGDLEPQQKHTFY 640 (1053)
T ss_pred hHHhhhHHHHHHHHHhCcHHHhhcCC-----C-----------------CCCcHHHHHHHhhhh--hcccCChHHHhHHH
Confidence 9 89999999999999988722211 0 013556666666533 22347788889999
Q ss_pred HHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHhhCCCcc-cccccchhHHHHHHHHHHHhhhhhhccCCCcHHHHHHHH
Q 001029 772 QTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDL-KNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMG 850 (1183)
Q Consensus 772 ~~l~~~~~~~~~~~~~~~~~~~~m~pl~~~~~~l~~~~~~-~~~~~~~~ii~~v~~ll~~l~Gi~~a~~~~~~~~l~~~l 850 (1183)
+|+|.+++..+...+.....-.+|.-++..|..+.-+++- .+.+.|+.+.+-.-+.+......|.+.+.+.+
T Consensus 641 eAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa~~n~~~L~d~~tvki~an~~ktnVa~ctslg~~fy------- 713 (1053)
T COG5101 641 EACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQADENINRLSDTMTVKIDANKMKTNVAKCTSLGYRFY------- 713 (1053)
T ss_pred HHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhhcccccc-------
Confidence 9999999976655556667889999999999998755443 24567777777777888888888887776633
Q ss_pred Hhh-HHHHHHHHHHhcCChHHHHHHHHHHHHHhhcccccc--cc--chhhhHHHHHHHHHHHhhhcccC-----------
Q 001029 851 FSV-MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYL--EV--QETNIVIDFCTRLLQLYSSHNIG----------- 914 (1183)
Q Consensus 851 ~~~-~~~~~~ll~~y~~~~~v~~~iL~~~~e~v~~~~~~l--~~--~~~~~lf~~~~~ll~~y~~~~~~----------- 914 (1183)
|. ...+..++..|..-+-. +++.|.-.+--- .+ ...+.+.+++++++.+|.+....
T Consensus 714 -Pq~~~~y~~ml~ly~avs~~-------Is~~vaaeg~iatktp~vrglrtiKkEIlkLv~tyIska~dl~~V~n~lv~~ 785 (1053)
T COG5101 714 -PQTCSSYCIMLFLYFAVSFD-------ISNSVAAEGLIATKTPAVRGLRTIKKEILKLVATYISKARDLKFVQNDLVNM 785 (1053)
T ss_pred -hHHHHHHHHHHHHHHHHHHH-------HHHHHHhcccccccCccccchHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 33 33344444444332221 122222221111 11 23577889999999999754321
Q ss_pred ---cccccccccccccchhhhhhhHHHHHHHHHHhhcCCCcccCCccccccccchhHHHHHhhhccccccccccccchhh
Q 001029 915 ---KMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKL 991 (1183)
Q Consensus 915 ---~~~~~~~~~~~~~~~~e~~k~l~~~l~lL~~~l~~~~~~f~~~~~~d~~~~~~~v~~~~l~~~iPli~~dll~yPkl 991 (1183)
.++.+|....|...++|.......+.+-+.+++.-. ...++...+.|++-||..|+-+||++
T Consensus 786 l~eaVl~DY~nNvPdardaevLnl~ttiV~~v~~~i~~~---------------~~l~l~svf~ctl~mi~kdf~EypEh 850 (1053)
T COG5101 786 LCEAVLFDYKNNVPDARDAEVLNLGTTIVRNVESVIYLQ---------------RELFLISVFICTLIMIVKDFDEYPEH 850 (1053)
T ss_pred HHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHhhhh---------------hHHHHHHHHhhhHHHHHhhhhhChHH
Confidence 011333333344444444444444444444333222 22334466788889999999999999
Q ss_pred hHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcC-CCccchhh-----
Q 001029 992 CHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGA-GKVGLAAQ----- 1065 (1183)
Q Consensus 992 ~~~ff~Ll~~l~~~~~~~l~~L~~~~f~~ll~sl~~Gl~~~d~~I~~~~l~~l~~L~~~~~~~~~~-~~~~~~~~----- 1065 (1183)
+++||.|++.+..+++..+.++|+..|+.+..+|.|+++|.+++|...+++++..+.+.+.+.-.. ...+++..
T Consensus 851 r~~f~~Ll~~inl~sF~afl~~p~p~Fklv~nti~wsfkhi~RDv~~~gLnill~l~kn~~~mg~~~~n~F~~~yy~s~l 930 (1053)
T COG5101 851 RKNFLLLLENINLFSFSAFLSFPQPSFKLVYNTILWSFKHINRDVSDLGLNILLILFKNCHEMGVPFINQFYAQYYMSTL 930 (1053)
T ss_pred HHHHHHHHHHHHHHhHHHHHcCCcHHHHHHHHHHHHHHHhccchHhhhhhHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998877543100 00011110
Q ss_pred -----hhc-cCCCCC-CCchhHHHHHHHHHHHHHHhccCCCchhHHHhhhHHHHHhcCHHHHHHHHHHHHHcCCCchhHH
Q 001029 1066 -----AAG-INNSNG-NPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQANPPFKS 1138 (1183)
Q Consensus 1066 -----~~~-~~~~~~-~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~~~~~~f~~~~~~li~~q~~~~~~~ 1138 (1183)
+++ ..|+++ ..|.-++..+++++-+. .++-|+|.-|-.|.....+|...++.+..+.-.++
T Consensus 931 ~~il~vltDsDhKsgF~~Q~Llla~li~lv~dn------------kisVPlyd~~~~n~~~lseyi~~l~~~sfp~it~e 998 (1053)
T COG5101 931 ENILGVLTDSDHKSGFDQQCLLLAFLIRLVKDN------------KISVPLYDGINPNITILSEYIVGLFVKSFPNITQE 998 (1053)
T ss_pred HHHHeeeeccchhccchHHHHHHHHHHHHHhcc------------ccccccccCCCCchhhHHHHHHHHHHhhcCcccHH
Confidence 233 555553 44455566666655543 35677777777788889999999998873235577
Q ss_pred HHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHhhhc
Q 001029 1139 RLANALQSLTSSNQLSSSLDRVNYQRFRKNLTNFLIEVRGF 1179 (1183)
Q Consensus 1139 ~l~~~F~~L~~~~~~~~~l~~~nr~~F~~~l~~F~~~vr~~ 1179 (1183)
.++.+...|+.- ..+-.-|+.++++|+.+|++|
T Consensus 999 ~v~~f~~~l~~~--------~~d~~ifk~~~~df~vkv~e~ 1031 (1053)
T COG5101 999 SVKIFSVGLFEL--------CGDDEIFKEHVEDFRVKVYEF 1031 (1053)
T ss_pred HHHHHHHHHHHH--------hCcHHHHHHHHHHHhhheeee
Confidence 787777888762 467789999999999999876
No 3
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-66 Score=567.94 Aligned_cols=683 Identities=26% Similarity=0.291 Sum_probs=549.2
Q ss_pred chHHHHHHHHHH----HHH-hhhcccccCCCCCCChhhhhhHHHHHHHHHhcccccccccc---------cCCCCccch-
Q 001029 448 WSWEARDILLDT----WTT-LLVSLDSTGRNVVLPLEVRNAAASLFALIVESELKVASASA---------MDDNGEFNY- 512 (1183)
Q Consensus 448 ~~~es~~~lL~~----W~~-l~~~~~~~~~~~~~~~~~~~~~~~I~~~yi~srl~~~~~~~---------~~e~d~~e~- 512 (1183)
.+.++++.+|.- |-. ++.+... +-.....+.+|..++++.|+++++..+.... -+|++.++.
T Consensus 3 ~y~s~~d~Ll~s~~~~Wltnl~~~~~~---~f~~~Gf~~d~~V~v~n~~lq~hl~~~~ga~i~~an~V~~R~eee~~~l~ 79 (748)
T KOG4541|consen 3 PYASWCDVLLSSSHVGWLTNLYSSVRQ---KFDLEGFWLDCPVAVSNRKLQVHLCSLAGAEIFPANNVQMRDEEELLLLT 79 (748)
T ss_pred chHHHHHHHHhcCCcchHHHHHhhHHH---HHhhhhhHhhCcHHHHHHHHHHHhcccchhhcccccchhcccHHHHHhhc
Confidence 346777888877 877 6665211 0011134557889999999999998886411 112211111
Q ss_pred -hhccHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhcc----------cCCCC-c----chhHHHHHHHHHHH
Q 001029 513 -LQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQG----------RGMID-P----TETLEELYSLLLIT 576 (1183)
Q Consensus 513 -~~~d~~~~~eqLe~i~~L~R~~~~~t~~~L~~ll~~~~~~l~~~----------~~~~~-~----~~~~E~L~Wli~i~ 576 (1183)
.+||.+...+++...+.++|...+.+-+.. .+++.....++.. -|+.. . ..+.||.|||+++.
T Consensus 80 ~~edd~D~s~D~~~~~~~~gr~gae~c~~~~-~lle~~~t~lh~~~~~~~~~la~~GS~t~~s~~l~~~~eDqHWLmLVl 158 (748)
T KOG4541|consen 80 GVEDDIDPSPDVISKEIEEGRSGAEMCDGCR-ALLEIGTTTLHVVFDQLLRSLAPFGSLTLLSMLLGEVVEDQHWLMLVL 158 (748)
T ss_pred CCCccCCcchhHHHHHHhcCchHHHHHHHHH-HHHHhcccccHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 144445578888899999999888877766 6777765555421 13221 1 25779999999999
Q ss_pred HhHhccCCCCCccCChhhhhhhhhh----h----------------------hcccCchHHHHHHHHHHHHhhhcCc--c
Q 001029 577 GHVLADEGEGEIPVVPNAIQTHFVD----T----------------------IEAAKHPVVLLCGSIIKFAEWSLDP--E 628 (1183)
Q Consensus 577 g~~l~d~~~ge~~~iP~~i~~~~~~----~----------------------~~~~~~~vv~Li~~ll~l~~~~l~~--~ 628 (1183)
|..++|+..|+.+.+|..+..|+.. + -.-..|+++.+.++++++...+++. .
T Consensus 159 ~~~~~dee~~~~~~~~~~~~~yt~~htsk~D~s~~~q~L~~~ge~~a~s~~~y~~e~d~~I~~~sa~~~~~~~e~~~v~a 238 (748)
T KOG4541|consen 159 MANSTDEETWSYEARDILLDTYTTLHTSKMDGSGGNQWLPPEGEHAAASLFSYIVESDLKIASASATTEDDADELASVSA 238 (748)
T ss_pred HHhccccccCCccCCCchHhhhhhhhcccccCCCcccccCCcccchhhhhhhhhhhcchHHHHhHHHhhhhHHHHHHHHH
Confidence 9999999999999998888776441 0 0013367788889999988776432 1
Q ss_pred cccccCCHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCccccchhhHhHHHHhhcCCCCc-hhHHHHHHHHHHh
Q 001029 629 ARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG-KPVLDIIVRISMT 707 (1183)
Q Consensus 629 ~~~~~~Sp~l~~~~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~f~~~~~g-~~~l~~ll~~~~~ 707 (1183)
+.-.++||++...+.||+.+|.++|....++++ +.. +..-..+|+..+.+ .+++.++++|+..
T Consensus 239 ~~~~l~Sp~l~~~l~rfl~a~~~~~~~~~~~~y------------~~~----s~~~~tv~p~~te~s~~~~~~ii~kVla 302 (748)
T KOG4541|consen 239 MDERLGSPALIARLARFLDATIPFLAKLFSDHY------------ARL----SQGRGTVDPTETEESVYSLLLIIGKVLA 302 (748)
T ss_pred HHHhccCHHHHHHHHHHHHhhhhHHHHHhHHHH------------HHh----cCCCCCCCcccchhhHHHHHHHHHHHHH
Confidence 111348999999999999999999887653332 221 22223456655555 7889999999999
Q ss_pred hccCCCCchhHHHHHHHHHHHHHhhccccchhhhcchhHHHHHHHhhcch-hhhcccchhhHHHHHHHHHHHhcCCCccc
Q 001029 708 TLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDK-TLILLNSTNQRSLAQTLVLSAYGMRNSES 786 (1183)
Q Consensus 708 ~L~~~~~e~~v~~~~~~~LL~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~-~~~~l~~~~~~~l~~~l~~~~~~~~~~~~ 786 (1183)
++..|.+|++++.+++ +.|-+++....+....+.++.|+.+...+.+.. +..-+++..++.+|+++++.+++..|.+.
T Consensus 303 ~lvn~~sE~~L~~Da~-q~l~~lVe~~~~~~vvv~~e~~~~laeq~~s~~~~l~i~s~p~~~~lmkaLvl~gfa~~d~e~ 381 (748)
T KOG4541|consen 303 DLVNGESETALVPDAL-QSLFVLVEEANNHPVVVLSESIIKLAEQCLSAEMRLSIFSPPLMEALMKALVLWGFAYLDLEE 381 (748)
T ss_pred HHhcccchhhhhHHHH-HHHHHHHHHhccCCeeeccHHHHHHHHHHhccCCcccccCchHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999 788899998888888889999999999987743 33345677799999999999999889999
Q ss_pred chHHHHHHHHHHHHHHHHhhCCCcccccccchhHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHhhHHHHHHHHHHhcC
Q 001029 787 SNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKH 866 (1183)
Q Consensus 787 ~~~~~~~~m~pl~~~~~~l~~~~~~~~~~~~~~ii~~v~~ll~~l~Gi~~a~~~~~~~~l~~~l~~~~~~~~~ll~~y~~ 866 (1183)
..++|...++|+..||-..+++++ +.+++.+|+.-|+.+.|++.|.+..+...+|++++..+..|.+++..|.+
T Consensus 382 ~~n~~~~~LqpL~~Rf~~~~nq~~------q~~~~~~Ii~~l~~~~g~a~a~q~d~~~~Lf~fL~~~~~~c~glm~s~~~ 455 (748)
T KOG4541|consen 382 ECNLGSNKLQPLPSRFFTYFNQHN------QGKFVLDIIVRLSLTSGTAYAGQKDLQRSLFQFLVLSAYGCRGLMASNQY 455 (748)
T ss_pred HHHHHHhhccccHHHHHHHhcccc------hhhHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHhhhhhHHHHhhc
Confidence 999999999999999999988773 46777888899999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHhhcccccccc-chhhhHHHHHHHHHHHhhhcccCcccccccccccccchhhhhhhHHHHHHHHHH
Q 001029 867 ESAVVYLLLKFVVDWVDGQISYLEV-QETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSN 945 (1183)
Q Consensus 867 ~~~v~~~iL~~~~e~v~~~~~~l~~-~~~~~lf~~~~~ll~~y~~~~~~~~~~~~~~~~~~~~~~e~~k~l~~~l~lL~~ 945 (1183)
.+++|..|+..+.++..+...|+.. ..++.+|..|++++++|...+.+|...+ ..+|+|+|.++.+++++|+|
T Consensus 456 ~~~~v~~i~~~~vdvs~k~~~y~~~e~~~~~ly~sclql~~~y~~~~~~r~rt~------~a~~Ee~~sdl~lvl~lL~n 529 (748)
T KOG4541|consen 456 VKDLVAHITSSLVDVSNKSDLYNLAEQPDIILYVSCLQLERLYGAASATRPRTQ------RAIYEEGLSDLNLVLRLLEN 529 (748)
T ss_pred cHHHHHHHHHHHHHhhhhhhhhccccChhHHHHHHHHHHHHHhhhhcccCcchH------HHHHHhhhhHHHHHHHHHHH
Confidence 9999999999999999999999986 4589999999999999999998887753 47899999999999999999
Q ss_pred hhcCCCcccCCccccccccchhHHHHHhhhccccccccccccchhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHH
Q 001029 946 LCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTL 1025 (1183)
Q Consensus 946 ~l~~~~~~f~~~~~~d~~~~~~~v~~~~l~~~iPli~~dll~yPkl~~~ff~Ll~~l~~~~~~~l~~L~~~~f~~ll~sl 1025 (1183)
.+++||.+||.+.--.+ .+++||.+|+++++|+|+.++++|||+|.+||+++.|+|+..|+++.++|.+.++.+++|+
T Consensus 530 ~lskdF~~~s~e~~~~~--G~a~VV~~gl~~ilplm~~~lLk~P~lc~~~~~lIty~ce~~pe~la~~~~~l~~sl~qc~ 607 (748)
T KOG4541|consen 530 YLSKDFSSDSIETQSTN--GIAQVVYFGLHIILPLMTLELLKYPKLCFDDVDLITYMCERAPEALASYHYKLKNSLNQCS 607 (748)
T ss_pred Hhhhhhhcccccccccc--CcceEEEeeHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHhh
Confidence 99999999986211111 2489999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHH-HHHHHHHHHHHHhccCCCchhHH
Q 001029 1026 DFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVL-SRFLRSLLQLLLFEDYSPDMVGT 1104 (1183)
Q Consensus 1026 ~~Gl~~~d~~I~~~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~ll~~l~~~~l~~~~~~~~~~~ 1104 (1183)
..||+. ++...+|+...+-+.++....+++.. ...+.++ .+|++.+|++++++++++++...
T Consensus 608 ~LGMTg---e~~s~~l~~~~e~v~hfgspankgrc--------------TqnlafL~~efL~tvf~~ll~~~~~t~l~s~ 670 (748)
T KOG4541|consen 608 GLGMTG---ESHSAGLHTDPEGVFHFGSPANKGRC--------------TQNLAFLSREFLRTVFHFLLFEDYSTDLVST 670 (748)
T ss_pred ccCCcc---ccchHhhccChHhhhccccccccccc--------------cccHHHHHHHHHHHHHHHHHHhhcchHHHHH
Confidence 999993 34444444444444444333333210 1113344 45999999999999999999999
Q ss_pred HhhhHHHHHhcCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHhhhccccC
Q 001029 1105 AADALFPLILCEPRLYQRLGSELIERQANPPFKSRLANALQSLTSSNQLSSSLDRVNYQRFRKNLTNFLIEVRGFLRTM 1183 (1183)
Q Consensus 1105 ~s~~l~~Li~~~~~~f~~~~~~li~~q~~~~~~~~l~~~F~~L~~~~~~~~~l~~~nr~~F~~~l~~F~~~vr~~L~~~ 1183 (1183)
++.++|+||+|+|..|++++++|+++|.||..+++++.||++||.+++ .++++|++|-+|++++..|+.+|.|+|+++
T Consensus 671 a~~Aly~LI~~e~~~y~elvneL~skq~np~~~qrLa~Af~~Lt~sn~-~psldR~~~~~Frk~le~Fl~~V~Gllc~n 748 (748)
T KOG4541|consen 671 AADALYPLILCEPNLYQELVNELISKQANPNFKQRLANAFQVLTTSNQ-LPSLDRLNYQRFRKNLENFLVEVLGLLCLN 748 (748)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHhhccChHHHHHHHHHHHHHhccCC-CCCccHHHHHHHHHHHHHHHHHhhcccccC
Confidence 999999999999999999999999999999999999999999999875 445999999999999999999999999875
No 4
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.4e-46 Score=454.99 Aligned_cols=809 Identities=15% Similarity=0.151 Sum_probs=567.5
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHHHHHHHHHhccCCC-----
Q 001029 48 PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSP----- 122 (1183)
Q Consensus 48 r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~~----- 122 (1183)
|.+|++++.+|+..|++|..|..||+.|+++.++|||++.|++.|+.+|+.+|.++|.++|+|+.+.+...+++.
T Consensus 29 r~eA~~~l~~lke~~~~~~~~~~iL~~s~~~~~k~f~Lqlle~vik~~W~~~~~~~r~glk~~v~~~~~~~~~~~~~~~~ 108 (1041)
T KOG2020|consen 29 RGEAQQILEELKEEPDSWLQVYLILKLSTNPILKYFALQLLENVIKFRWNSLPVEERVGLKNYVLTLIIEASPDEDVSET 108 (1041)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHhccCCchhheeeHHHHHHHHHHhcccCCccccHHHHHHHHHHHhhcCCcHhHHHH
Confidence 699999999999999999999999999999999999999999999999999999999999999999999887665
Q ss_pred chHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccCCC-hhhHHHHHHHHHHHHhhhCCCCcCCCCCcHHHHHH
Q 001029 123 EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHG-VDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQ 201 (1183)
Q Consensus 123 ~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~lL~~lv~E~s~~~ss~~~l~~~~h~k 201 (1183)
.+++++|++.+++.|+||.||. .|++|+.++.+......+ .+..++.+.+|++.|+.|++. .+.. .++.-
T Consensus 109 ~~~~~~kL~~i~Vqi~K~eWp~----~wp~~i~dl~~~s~~s~~~~el~m~Il~lLsEdvf~~ss~---~~~q--~~~~i 179 (1041)
T KOG2020|consen 109 EKHLLNKLNLILVQIVKREWPA----IWPTFIPDLAQSSKTSETVCELSMIILLLLSEEVFDFSSS---ELTQ--QKIII 179 (1041)
T ss_pred HHHHHHHHhHHHHHHHHHHHHh----hcchhhhhHHHHhhcCcccchHHHHHHHHHHHHHhcccch---HHHh--hhHHH
Confidence 6899999999999999999988 699999999999875322 367789999999999999888 2333 33444
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCccccccccccccccccC
Q 001029 202 CRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSS 281 (1183)
Q Consensus 202 ~~~~F~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~~~~~~~~~~~~~~~~~~~~ 281 (1183)
.+...+. .+..||++|..++.++. .. ++.++|..+..+++|++.++
T Consensus 180 l~~~~~~-~f~~i~~l~~~~~~~a~-----------~~-~~~atl~tl~~fl~wip~~~--------------------- 225 (1041)
T KOG2020|consen 180 LKNLLEN-EFQQIFTLCSYIKEKAN-----------SE-LLSATLETLLRFLEWIPLGY--------------------- 225 (1041)
T ss_pred HHHHhhH-HHHHHHHHHHHHHhhhh-----------hH-HHHHHHHHHHHHhhcccHHH---------------------
Confidence 4556666 59999999998776553 44 99999999999999999888
Q ss_pred CCccccccccCCcchHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHhcccCcccCCChhhHHHH
Q 001029 282 SKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHH 361 (1183)
Q Consensus 282 ~~~~~~~~~~~p~~W~~~l~~~~~l~llf~~~~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~~~f~~~~~~~r~~~ 361 (1183)
+.+.+.+..+...+.. .++++..|++||+++++..+..+.... ..+
T Consensus 226 ------------------I~~tn~l~~~l~~~ln------------~~~~r~~al~CL~ei~s~~~~~~~~~~----~~~ 271 (1041)
T KOG2020|consen 226 ------------------IFETNILELLLNKFLN------------APELRNNALSCLTELLSRKRSIYERKT----VPM 271 (1041)
T ss_pred ------------------HHHhhhHHHHHHhccc------------hHHHHHHHHHHHHHHHhccccchhHHh----HHH
Confidence 4445566666655543 377899999999999998876443322 346
Q ss_pred HHHHHHhhhhhcCChhhHHHHhhhCCChhh--HH-HHHHHHHHHHhhcChhhHHhhhhccCcchhHHHHHHHHHHHHHHH
Q 001029 362 LLQLLSGILEWVDPPDVVAQAIESGKSESE--ML-DGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVL 438 (1183)
Q Consensus 362 l~~~l~~~~~il~~~~~~~~~~~~g~~~~~--~~-~~cr~l~~L~~~~~~~~l~~~~~~~~~~~~l~~l~~l~~~~~~~~ 438 (1183)
+...+..+. .+.....+.+.+..+...+. +. .+|..+..+...|. .++++ .......+-..+..++..
T Consensus 272 ~~~~~~~l~-~i~~~l~~~~~~~~~~~~dq~~fi~~l~~~l~~f~~~~~-----~lle~--~~~~~~~~~~~~~~li~i- 342 (1041)
T KOG2020|consen 272 FNLTIYQLR-SIPQDLDIPEVYSSLSDEDQDSFIEKLAQFLSLFFEQHI-----ALLES--SLSQRPVLLEALLELILI- 342 (1041)
T ss_pred HHHHHHHHH-HhhhhhchhhhhhcccHhHHHHHHHHHHHHHHHHHHHHH-----HHHcC--chhhhhHHHHHHHHHHHH-
Confidence 666666644 34333445555555543333 22 45666665554432 22222 000111111112333333
Q ss_pred hhcccccccchHHHHHHHHHHHHHhhhccccc-----CCCCCCChhh----hhhHHHHHHHH-------Hhccccccccc
Q 001029 439 MMNNTEEGTWSWEARDILLDTWTTLLVSLDST-----GRNVVLPLEV----RNAAASLFALI-------VESELKVASAS 502 (1183)
Q Consensus 439 ~~~~~~~~~~~~es~~~lL~~W~~l~~~~~~~-----~~~~~~~~~~----~~~~~~I~~~y-------i~srl~~~~~~ 502 (1183)
+..+. .+.+..||++|..++.+..|. .-..+.|... .....++|+.| ...+|.+|+++
T Consensus 343 ---~~~~~---se~~~~~ld~W~~lv~~l~~~~~~ll~~s~~~~~~~~~~ri~~rk~~y~~~~~~~r~l~l~~m~~Pe~v 416 (1041)
T KOG2020|consen 343 ---STIEP---SEIFKICLDYWNKLVADLYYNKPPLLQLSTTLPSISDYSRIDFRKSIYQEFLSKLRLLRLERMAKPEEV 416 (1041)
T ss_pred ---hccCc---hhHHHHHHHHHHHHHHhhhcccccccccccccccccchhccchHHHHHHHHHHHHHHHHHHHhcCchhe
Confidence 23343 799999999999999986652 1111111100 01225666655 67789999887
Q ss_pred ccCCCCccchh----h--ccHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhcccCCCCcc-hhHHHHHHHHH-
Q 001029 503 AMDDNGEFNYL----Q--ASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPT-ETLEELYSLLL- 574 (1183)
Q Consensus 503 ~~~e~d~~e~~----~--~d~~~~~eqLe~i~~L~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~~~-~~~E~L~Wli~- 574 (1183)
...+++.++.. . +-...|...++..++++.++..++..++...+..... | ..|. ...+.+||.++
T Consensus 417 live~~~~~~vre~~~~~~~~~ly~~~~e~l~~~~~L~~~~t~~~~~~kl~~~l~------~-~~~~~~~ln~l~~ai~s 489 (1041)
T KOG2020|consen 417 LIVENEQGEIVREFMKDHDFITLYPVLRETLVYLLHLDVVDTEKIMTEKLAIQLD------G-DEWSLHNLNRLCWAIGS 489 (1041)
T ss_pred eEEechHHHHHHHhccCcchhhhhHHHHHHHHHHHHhhhhhhhhhhhHhHHHHhh------H-HHHhhhhhhhHHHHHHH
Confidence 76666554421 2 2346889999999999999999999999988665442 1 2232 46779999997
Q ss_pred HHHhHhccCCCCCccCChhhhhhhhhhhhcccCchHHHHHHHHHHHHhhhcCcccccccCCHHHHHHHHHHHHHHHHhhc
Q 001029 575 ITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYL 654 (1183)
Q Consensus 575 i~g~~l~d~~~ge~~~iP~~i~~~~~~~~~~~~~~vv~Li~~ll~l~~~~l~~~~~~~~~Sp~l~~~~l~fl~~~~~~YL 654 (1183)
|+|+++.+ ...+.++.++.+++++|+...++.++++ ++.++++.++++++ |+
T Consensus 490 isg~~~e~----------------------~e~k~~~~v~~d~l~l~E~~~~kdn~av-----i~~Ni~~vv~q~p~-Fl 541 (1041)
T KOG2020|consen 490 ISGRMLED----------------------MEKKFFVAVIRDLLNLCERKRGKDNKAV-----IASNIMYVVGQYPR-FL 541 (1041)
T ss_pred HHhhhHHH----------------------HHHHHHHHHHHHHHHHHHHhhcCCchhH-----HHHHHHHHhcccch-HH
Confidence 88877532 1335578899999999998776666655 78889999998876 77
Q ss_pred CCcccccccCCCCCCCCCccccchhhHhHHHHhhcCCCCc--hhHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhh
Q 001029 655 MPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG--KPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVR 732 (1183)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~f~~~~~g--~~~l~~ll~~~~~~L~~~~~e~~v~~~~~~~LL~~l~~ 732 (1183)
+.+ |.++++++..+++++++.+.| +|.||+|++++..|+.+|.-... .
T Consensus 542 ----~~h------------~~~Lkt~~~~L~efmhe~h~gvqdmacd~F~~ii~~~~~~fv~~~~-----~--------- 591 (1041)
T KOG2020|consen 542 ----KAH------------WKFLKTVVHKLFEFMHETHEGVQDMACDTFIKIIQKCKRHFVITQL-----G--------- 591 (1041)
T ss_pred ----HHH------------HHHHHHHHHHHHHHHhhhhHHHHhhhHHHHHHHHHhhhhhheeecc-----c---------
Confidence 555 788888999999999999998 89999999999999998711111 0
Q ss_pred ccccchhhhcchhHHHHHHHhhcchhhhcccchhhHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHhhCCC-cc
Q 001029 733 RKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKN-DL 811 (1183)
Q Consensus 733 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~m~pl~~~~~~l~~~~-~~ 811 (1183)
-..|.|..+..+.+. ..-.+.+.+++.+|.++++++++..++..++++...+|.-....|..++.++ ..
T Consensus 592 --------e~~~fv~~~~~~l~~--i~~~l~~~q~~~~~~al~~~V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~~~~~ 661 (1041)
T KOG2020|consen 592 --------ETKPFVGELLLNLTA--ITEDLQPQQRHTFYEALGLMVSAEIDPAKAERLQSKLMVLPNRAWINIILQARCN 661 (1041)
T ss_pred --------ccccchHHHhhcccc--hhcCchHHHHHHHHHHHHHHHHHhCCHhhHHHHHhcccccchhhhcchhhcCccc
Confidence 113456666655432 2223556678899999998888888888888888888888888898876543 33
Q ss_pred cccccchhHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHhh-HHHHHHHHHHhcCChHHHHHHHHHHHHHhhccccccc
Q 001029 812 KNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSV-MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLE 890 (1183)
Q Consensus 812 ~~~~~~~~ii~~v~~ll~~l~Gi~~a~~~~~~~~l~~~l~~~-~~~~~~ll~~y~~~~~v~~~iL~~~~e~v~~~~~~l~ 890 (1183)
.....+.+.+..+.+++..+..++.+.++.++ +. -.++.+.+..|..++..+. ..+.+.+..-+
T Consensus 662 ~~~l~~~~~v~s~~~i~~~~~~~~~sl~~~f~--------~~~~~~~~d~~~l~~~~s~~v~-------~~~~~~~~~~t 726 (1041)
T KOG2020|consen 662 DEILKLLETVKSLLNILKTNSRALTSLGSTFV--------PQLGKIYLDMLQLYIKQSELVS-------INVTAGGSEKT 726 (1041)
T ss_pred HHhhcchHHHHHHHHHHHhHHHHHHhcCcccc--------cccccccHHHHHHHHHhccccc-------HHHhccccccc
Confidence 35567777777888888877777777665422 22 3455666667776665443 33333333322
Q ss_pred cc----hhhhHHHHHHHHHHHhhhcccCccc--------------ccccccccccchhhhhhhHHHHHHHHHHhhcCCCc
Q 001029 891 VQ----ETNIVIDFCTRLLQLYSSHNIGKML--------------MTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLV 952 (1183)
Q Consensus 891 ~~----~~~~lf~~~~~ll~~y~~~~~~~~~--------------~~~~~~~~~~~~~e~~k~l~~~l~lL~~~l~~~~~ 952 (1183)
.. .-+.+.+++..++.+|.....++-. .++....|...+.+... +...+++.+.+-..
T Consensus 727 ~~~~v~~~~svk~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~nvPd~r~~~vl~----l~~~iv~~Lg~~i~ 802 (1041)
T KOG2020|consen 727 KTPFVKTLRSVKREILKLLETFISKSEQRDLYLLMLVPPLLDAVLFDYLDNVPDYRENEVLS----LNATIVPKLGEFIP 802 (1041)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccCcccchhHHHHhhhhHHHHHHHHHHHccCcchhcchHHH----hhhhhhhhhhhHhh
Confidence 21 2467788888888888654322110 11111112111111111 11111111110000
Q ss_pred ccCCccccccccchhHHHHHhhhccccccccccccchhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCC
Q 001029 953 DFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQ 1032 (1183)
Q Consensus 953 ~f~~~~~~d~~~~~~~v~~~~l~~~iPli~~dll~yPkl~~~ff~Ll~~l~~~~~~~l~~L~~~~f~~ll~sl~~Gl~~~ 1032 (1183)
..+ . .+.-..+.|.+-|++.|+.+||+++..||.+++++...++..+.++|++.++.++.++.|.+.|.
T Consensus 803 ~~~--------~---~i~~~v~~c~l~m~~~d~qe~~e~~~~f~~lle~l~~~~~~~~~~l~~~~~~~~~~si~~~f~h~ 871 (1041)
T KOG2020|consen 803 AEL--------P---LINIAVLECTLEMINKDFQEYPEHRLNFLLLLEALLLFCFPAFSELPADQVKLVSDSIVWAFHHT 871 (1041)
T ss_pred hhc--------c---HHHHHHHhhhhhccccccccchHHHHHHHHHHHHHHHhhhHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 000 0 12225557778999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHh
Q 001029 1033 DSEIVDMCLRALRALASYHYK 1053 (1183)
Q Consensus 1033 d~~I~~~~l~~l~~L~~~~~~ 1053 (1183)
.++|+..++..+..+...+.+
T Consensus 872 ~r~i~~~~l~~l~~l~k~~~~ 892 (1041)
T KOG2020|consen 872 MRNIAENGLNILLELLKNLAE 892 (1041)
T ss_pred hhhhhhhhHHHHHHHHHHHHH
Confidence 999999999988888766643
No 5
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5e-27 Score=273.87 Aligned_cols=922 Identities=14% Similarity=0.104 Sum_probs=533.5
Q ss_pred HHHHHHHHHHHhhCCCC---HHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHH
Q 001029 31 IMHSIEIACSSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSL 107 (1183)
Q Consensus 31 ~~~~le~~~~~l~~~~~---r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~l 107 (1183)
.++++|++..++|++++ .+.++++|+..+.+|++|...+.+|+..+++.+|||+|.+|+..|.++|...|++++.+|
T Consensus 5 ~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~~evqyFGAltL~~ki~~~~e~~~~~~~~qL 84 (982)
T KOG2022|consen 5 LIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKSSEVQYFGALTLHDKINTRWEECPANEAVQL 84 (982)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCchhHHHHHhHHHHHHHHHhhhccCChhHHHHH
Confidence 57889999999999875 488999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccCCCh-----hhHHHHHHHHHHHHh
Q 001029 108 IGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGV-----DTQFIGINFLESLVS 182 (1183)
Q Consensus 108 r~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~lL~~lv~ 182 (1183)
+.-++.-+.... +.|+.|.+|++..+|.++-.--+| .|+.-+.+++..+....+| -+|.+.++.|+.+..
T Consensus 85 ~~klf~~l~~~~-g~~~lVl~kl~~sLasl~l~~~~d----~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p~ 159 (982)
T KOG2022|consen 85 KLKLFLILSRFA-GGPKLVLNKLCASLASLILYMVPD----LWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSFMPA 159 (982)
T ss_pred HHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHccc----cCCchHHHHHHHHhcccCccccchhhHHHHHHHhccCcH
Confidence 999999888775 579999999999999888665555 5777788888877643344 477899999999999
Q ss_pred hhCCCCcCCCCCcHHHHHHHH--HHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHccccc-cc
Q 001029 183 EFSPSTSSAMGLPREFHEQCR--ISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDF-QF 259 (1183)
Q Consensus 183 E~s~~~ss~~~l~~~~h~k~~--~~F~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f-~~ 259 (1183)
||+.. .++..+.-..+ .+++.+.-. .+++....+......++...-.-..+++|.. .|+- .+
T Consensus 160 e~q~~-----~l~~t~~~~l~~eLak~~~~v~-------~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~---~Wi~~i~ 224 (982)
T KOG2022|consen 160 EFQHV-----TLPLTRRSVLRGELAKFSENVI-------SLLEVVLRGGSNSTSSLINLIFKQAAVDCVE---QWIRYIS 224 (982)
T ss_pred hhhhc-----cchhHHHHHHHHHHHHHHHHHh-------HHHHHHHhccccccHHHHHHHhhhHHHHHHH---HHHHHhc
Confidence 99877 45554433333 333332222 2333333221111111122223457788887 5553 22
Q ss_pred CCCCCccccccccccccccccCCCccccccccCCcchHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHH
Q 001029 260 DTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLI 339 (1183)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~l~llf~~~~~~~~~~~~~~~~~~~~l~~~~l~cL 339 (1183)
...... ..+++.+++.....-.. --+.+=+|+
T Consensus 225 ~~~~~c-------------------------------------~~i~~~ll~~l~~s~~~-----------~~~a~~~cm 256 (982)
T KOG2022|consen 225 LTGMDC-------------------------------------DQITQVLLDVLGQSTEG-----------SYEAAEKCM 256 (982)
T ss_pred cccccH-------------------------------------HHHHHHHHHHHhhhccc-----------cccchhhhc
Confidence 211111 12333333322211110 011112222
Q ss_pred HHHHhcccCcccCCCh---------hhHHHHHHHHHHhh---hhhcCChhhHHHHhhhCCC--hhhHHHHHHHHHHHHhh
Q 001029 340 VQLCSLTGTVFPSDNG---------KMQEHHLLQLLSGI---LEWVDPPDVVAQAIESGKS--ESEMLDGCRALLSIATV 405 (1183)
Q Consensus 340 ~qLasl~~~~f~~~~~---------~~r~~~l~~~l~~~---~~il~~~~~~~~~~~~g~~--~~~~~~~cr~l~~L~~~ 405 (1183)
+- .++++.++.- -.-..|-+++..-+ ..+++......+. ..+.+ ++++++||++....+.+
T Consensus 257 t~----~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~-~e~~d~~~e~i~~~~~i~v~~~En 331 (982)
T KOG2022|consen 257 TI----FGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQE-EENADASEEEIVTFLAITVSSVEN 331 (982)
T ss_pred cc----chhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHH-HhCCCchhHHHHHHHHHHHHHHhc
Confidence 11 1111111100 00122322221111 1112211111122 22334 68999999999999999
Q ss_pred cChhhHHhhhhccCcchhHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHH
Q 001029 406 TTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAA 485 (1183)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~es~~~lL~~W~~l~~~~~~~~~~~~~~~~~~~~~~ 485 (1183)
|.+..+...-......-++..+. ....+..+...+..++ -.....|+||..|.+++....+ ...++.-..+..
T Consensus 332 ~l~~lid~~~~g~~~e~v~rlv~--vll~~t~~PG~ypveE----~~S~~~l~FW~tL~dei~~~~~-e~~~~~~~i~~~ 404 (982)
T KOG2022|consen 332 HLPTLIDCAAQGEQSELVIRLVQ--VLLVLTNFPGQYPVEE----IVSDRTLIFWYTLQDEIMQTIN-ETQQIKKQILSQ 404 (982)
T ss_pred ccHHHHHHHhhcchHHHHHHHHH--HHHHHhCCCCCccHHH----HHhHHHHHHHHHHHHHHHHhhh-ccCCcchhHHHH
Confidence 86554443311100000111111 1222333444455553 4447789999999998765433 233443335566
Q ss_pred HHHHHHHhcccccccccccCCCCccchhhccHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHH-----HHHhcc--cC
Q 001029 486 SLFALIVESELKVASASAMDDNGEFNYLQASISAMDERLSSYALIARAAIDATVPLLTRLFSERF-----ARLHQG--RG 558 (1183)
Q Consensus 486 ~I~~~yi~srl~~~~~~~~~e~d~~e~~~~d~~~~~eqLe~i~~L~R~~~~~t~~~L~~ll~~~~-----~~l~~~--~~ 558 (1183)
+||...++--+.|...-. ++.-.+=+-|+ +|+. ...|.+.+|+....++.+.+.+ +.+.+. .+
T Consensus 405 qIy~qlvei~l~K~~~Ps--~e~~~~W~S~s----~e~F----~~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~ 474 (982)
T KOG2022|consen 405 QIYAQLVEILLKKLALPS--KEIWLSWSSDS----REQF----ESYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAG 474 (982)
T ss_pred HHHHHHHHHHHHHhcCCC--HHHhccCCcch----HHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcc
Confidence 888777665555443210 11000001122 3333 3345555555555555554422 111121 12
Q ss_pred CCCcchhHHHHHHHHHHHHhHhccCCCCCccCChhhhhhhhhhhhcccCchHHHHHHHHHHHHhhhcCcccccccCCHHH
Q 001029 559 MIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRL 638 (1183)
Q Consensus 559 ~~~~~~~~E~L~Wli~i~g~~l~d~~~ge~~~iP~~i~~~~~~~~~~~~~~vv~Li~~ll~l~~~~l~~~~~~~~~Sp~l 638 (1183)
..+| ..|+.+..+++-.-.+..+.++.|.+.+| .+++.+- ..+.+...|++
T Consensus 475 d~~p-~s~~~tEaci~~~~sva~~~~~t~~~~i~-----------------------rl~~~~a-----sik~S~~n~ql 525 (982)
T KOG2022|consen 475 DEDP-DSLNRTEACIFQFQSVAEYLGETESTWIP-----------------------RLFETSA-----SIKLSAPNPQL 525 (982)
T ss_pred CCCc-hHHHHHHHHHHHHHHHHhhcCcchhHHHH-----------------------HHHHhcc-----ccccccCChhH
Confidence 1234 47778888887666764433333433333 2232221 11222357999
Q ss_pred HHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCccccchhhHhHHHHhhcCCCCchhHHHHHHHHHHhhccCCCCchhH
Q 001029 639 MEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDL 718 (1183)
Q Consensus 639 ~~~~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~f~~~~~g~~~l~~ll~~~~~~L~~~~~e~~v 718 (1183)
.++.+..++.++. |+. ++. -++-.+.+.|++..|........+..+=+.+.+|-.+.....+-
T Consensus 526 ~~Tss~~igs~s~-~l~---e~P-------------~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~C~~~L~py~d~ 588 (982)
T KOG2022|consen 526 LSTSSDLIGSLSN-WLG---EHP-------------MYLNPSLPLLFQGLHNSKESEQAISTLKTLCETCPESLDPYADQ 588 (982)
T ss_pred HHHHHHHHHHHHH-HHh---cCC-------------cccCchHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhCchHHHH
Confidence 9999999999975 887 433 11223567778887753333333333333333333222222222
Q ss_pred HHHHHHHHHHHHhhccccchhhhcchhHHHHHHHhhcchhhhcccchhhHHHHHHHHHHHhcCCCcccchHHHHHHHHHH
Q 001029 719 QELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHA 798 (1183)
Q Consensus 719 ~~~~~~~LL~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~m~pl 798 (1183)
+..+|..+++ .....++.+.++|+++|++.+... +++...|+.+++.|+
T Consensus 589 ~~a~~~e~l~------------------------------~~~~~~S~~~klm~sIGyvls~~~-pEe~~kyl~~lin~i 637 (982)
T KOG2022|consen 589 FSAVCYEVLN------------------------------KSNAKDSDRLKLMKSIGYVLSRLK-PEEIPKYLMKLINPI 637 (982)
T ss_pred HHHHHHHHhc------------------------------ccccCchHHHHHHHHHHHHHHhcc-HHhHHHHHHHHHHHH
Confidence 2222211111 111234567899999999998655 888999999999999
Q ss_pred HHHHHHhhCCCcccccccchhHHHHHHHHHHHhhhhhhccCCC---------cHH-------HHHHHHHhhHHHHHHHHH
Q 001029 799 TAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPR---------TQK-------AIYEMGFSVMNPVLLLLE 862 (1183)
Q Consensus 799 ~~~~~~l~~~~~~~~~~~~~~ii~~v~~ll~~l~Gi~~a~~~~---------~~~-------~l~~~l~~~~~~~~~ll~ 862 (1183)
...++..+... .....+...+ ...+-++.....+.... ... ++.+++...++++.++++
T Consensus 638 l~qle~~l~~~-i~~~e~~l~~----~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s 712 (982)
T KOG2022|consen 638 LSQLEINLAPG-IDDQENHLRI----AFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLS 712 (982)
T ss_pred HHHHHHhhcCC-CCCHHHHHHH----HHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHH
Confidence 99887765432 1111111111 12222222222211100 001 677888889999999999
Q ss_pred HhcCChHHHHHHHHHHHHHhhccccccccchhhhHHHHHHHHHHHhhhcccCcccccccccccccchhhhhhhHHHHHHH
Q 001029 863 VYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQL 942 (1183)
Q Consensus 863 ~y~~~~~v~~~iL~~~~e~v~~~~~~l~~~~~~~lf~~~~~ll~~y~~~~~~~~~~~~~~~~~~~~~~e~~k~l~~~l~l 942 (1183)
.|-++++|++.++.-+..-+.+....+..+..-.++..|.+ |... +...-.+.++
T Consensus 713 ~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r----~~~~-------------~~a~tl~l~~-------- 767 (982)
T KOG2022|consen 713 MWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR----FLTS-------------CLAVTLSLIA-------- 767 (982)
T ss_pred HHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH----hccc-------------hHHHHHHHHH--------
Confidence 99999999999999888877665544333444555555554 2211 0011111111
Q ss_pred HHHhhcCCCcccCCccccccccchhHHHHHhhhccccccc-cccccchhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHH
Q 001029 943 LSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMS-GDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHV 1021 (1183)
Q Consensus 943 L~~~l~~~~~~f~~~~~~d~~~~~~~v~~~~l~~~iPli~-~dll~yPkl~~~ff~Ll~~l~~~~~~~l~~L~~~~f~~l 1021 (1183)
.++..-+. .+...+-...... ..+...+-++. .-+...||+...+|.+++.+.+..|..+.... ..|+.+
T Consensus 768 --~~l~~~~~---~~~~~~lv~~~~~---~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~-~~~ts~ 838 (982)
T KOG2022|consen 768 --ACLLAKST---VEQCKPLVGQDMA---NAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSM-LAFTSL 838 (982)
T ss_pred --HHHHhhhc---cccccccHHHHHH---HHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccch-HHHHHH
Confidence 11111111 0001110000001 11111111111 22567899999999999999999999875432 357777
Q ss_pred HH-HHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhccCCCc
Q 001029 1022 LG-TLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPD 1100 (1183)
Q Consensus 1022 l~-sl~~Gl~~~d~~I~~~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~l~~~~~~~ 1100 (1183)
+. +...+|++.++..++.+++++..++++.+++... .....| .+.=..++..+|.. +++...+.
T Consensus 839 i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s~~~~---tv~~~V-----------~~~G~~Li~~im~~-vgg~~~RS 903 (982)
T KOG2022|consen 839 ILICAFILLNSPEPTTIRAASQFLTALATYATSHDLV---TVTSVV-----------AEIGPILIYAIMRG-VGGEASRS 903 (982)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHhhcccchhH---HHHHHH-----------HhcchHHHHHHHHH-hcCcCccc
Confidence 77 8889999999999999999999999887653210 000001 12223467777877 67777666
Q ss_pred hhHHHhhhHHHHHhcCHHHHHHHHHHHHHcCCCc--hhHHHHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHhhh
Q 001029 1101 MVGTAADALFPLILCEPRLYQRLGSELIERQANP--PFKSRLANALQSLTSSNQLSSSLDRVNYQRFRKNLTNFLIEVRG 1178 (1183)
Q Consensus 1101 ~~~~~s~~l~~Li~~~~~~f~~~~~~li~~q~~~--~~~~~l~~~F~~L~~~~~~~~~l~~~nr~~F~~~l~~F~~~vr~ 1178 (1183)
.++.+++-|++|..-++..-..|..+.++....| ......+..|.+.+- .+|-||+.|++.+..|-.+.||
T Consensus 904 ~ld~~aDIL~al~~k~~se~r~wl~~~lq~~gfPs~~~s~e~k~rf~t~ll-------rer~n~R~~k~~il~~~L~~~~ 976 (982)
T KOG2022|consen 904 TLDALADILLALNAKFFSETRTWLKAVLQIPGFPSAGVSNEIKSRFVTSLL-------RERGNKRNFKQQILEFNLACTG 976 (982)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCcccCChHHHHHHHHHHH-------HHHhcHHHHHHHHHHHHHHhcC
Confidence 6899999999999888888999999988543233 334667777766654 2688999999999999999988
Q ss_pred cc
Q 001029 1179 FL 1180 (1183)
Q Consensus 1179 ~L 1180 (1183)
+-
T Consensus 977 l~ 978 (982)
T KOG2022|consen 977 LP 978 (982)
T ss_pred CC
Confidence 64
No 6
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=99.85 E-value=4.1e-20 Score=208.91 Aligned_cols=279 Identities=17% Similarity=0.235 Sum_probs=199.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHhhcccccccc----chhhhHHHHHHHHHHHhhhcccCc--------------
Q 001029 854 MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEV----QETNIVIDFCTRLLQLYSSHNIGK-------------- 915 (1183)
Q Consensus 854 ~~~~~~ll~~y~~~~~v~~~iL~~~~e~v~~~~~~l~~----~~~~~lf~~~~~ll~~y~~~~~~~-------------- 915 (1183)
..++.+++++|..+++.+. +.+...+..... ...+.+.|++++++++|.+.....
T Consensus 3 ~~i~~d~l~lY~~~s~~i~-------~~v~~~G~~~~~~~~~~~lr~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~ 75 (319)
T PF08767_consen 3 GRIYLDMLNLYRAYSQIIS-------QAVAESGEIATKTPKVRLLRTIKKEILKLIETFISKAEDPEEVANNFIPPLLDA 75 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHH-GGGGGSHHHHHHHHHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH-------HHHHhcCchhhccHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 4688899999999988755 555555544433 235789999999999998765411
Q ss_pred ccccccccccccchhhhhhhHHHHHHHHHHhhcCCCcccCCccccccccchhHHHHHhhhccccccccccccchhhhHHH
Q 001029 916 MLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDY 995 (1183)
Q Consensus 916 ~~~~~~~~~~~~~~~e~~k~l~~~l~lL~~~l~~~~~~f~~~~~~d~~~~~~~v~~~~l~~~iPli~~dll~yPkl~~~f 995 (1183)
+..+|.++.+...++|....+..+++-+.+.+.+.. . .+.-..+++++|||++|+.+||++|.+|
T Consensus 76 vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v------------~---~I~~~vf~~Tl~MI~~d~~~yPe~r~~f 140 (319)
T PF08767_consen 76 VLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQV------------P---QILEAVFECTLPMINKDFEEYPEHRVNF 140 (319)
T ss_dssp HHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCH------------H---HHHHHHHHHHHHHHSSTSSSSHHHHHHH
T ss_pred HHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhH------------H---HHHHHHHHHHHHHHHhhhhhChHHHHHH
Confidence 135677777888888888888888887777655432 2 3344666999999999999999999999
Q ss_pred HHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHh-hhcCCCccchhhhhccCCCCC
Q 001029 996 FSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYK-ETGAGKVGLAAQAAGINNSNG 1074 (1183)
Q Consensus 996 f~Ll~~l~~~~~~~l~~L~~~~f~~ll~sl~~Gl~~~d~~I~~~~l~~l~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 1074 (1183)
|+|++.+++.||..+.++|++.|+.+++++.||++|.+++|+..||+++..+++++.+ +......++
T Consensus 141 f~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~------------ 208 (319)
T PF08767_consen 141 FKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFY------------ 208 (319)
T ss_dssp HHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHH------------
T ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH------------
Confidence 9999999999999999999999999999999999999999999999999999999987 111111111
Q ss_pred CCchhHHHHHHHHHHHHHHhccCCCchhHHHhhhHHHHH----------------hcCHHHHHHHHHHHHHcC-CCchhH
Q 001029 1075 NPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLI----------------LCEPRLYQRLGSELIERQ-ANPPFK 1137 (1183)
Q Consensus 1075 ~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li----------------~~~~~~f~~~~~~li~~q-~~~~~~ 1137 (1183)
.+.+..+++.+|..+ ..+....-...-+..|..|+ ..|.++..+++.+++++. | .-.+
T Consensus 209 ---~~y~~~il~~if~vl-tD~~Hk~gf~~q~~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp-~l~~ 283 (319)
T PF08767_consen 209 ---QQYYLDILQDIFSVL-TDSDHKSGFKLQSQILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFP-NLSP 283 (319)
T ss_dssp ---HHHHHHHHHHHHHHH-HSTT-GGGHHHHHHHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-T-TS-H
T ss_pred ---HHHHHHHHHHHHHHH-HCcccHHHHHHHHHHHHHHHHHHHcccccccccCCCCccHHHHHHHHHHHHHHhCC-CCCH
Confidence 223333444444432 22222222223344444444 245667888888888876 5 3556
Q ss_pred HHHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHhhhc
Q 001029 1138 SRLANALQSLTSSNQLSSSLDRVNYQRFRKNLTNFLIEVRGF 1179 (1183)
Q Consensus 1138 ~~l~~~F~~L~~~~~~~~~l~~~nr~~F~~~l~~F~~~vr~~ 1179 (1183)
+++..+...|.+. ..++.+|+.++++|+.++|+|
T Consensus 284 ~qi~~fv~~Lf~~--------~~d~~~Fk~~lrDFlI~~kef 317 (319)
T PF08767_consen 284 KQIENFVQGLFEL--------NNDPEKFKTHLRDFLIQLKEF 317 (319)
T ss_dssp HHHHHHHHHHHHT--------TT-HHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHh--------cCCHHHHHHHHHHHhhhhhhc
Confidence 7888888888874 468999999999999999987
No 7
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=2.2e-13 Score=157.54 Aligned_cols=245 Identities=12% Similarity=0.098 Sum_probs=194.2
Q ss_pred HHHHHHHHHhhCC-CC---HHHHHHHHHhhhcCCCcHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhccCcCCHHHHHHH
Q 001029 33 HSIEIACSSIQMH-VN---PAAAEATILGLCQSPQPYKACQFILENS-QVANARFQAAAAIRDAAMREWSFLTADEKKSL 107 (1183)
Q Consensus 33 ~~le~~~~~l~~~-~~---r~~Ae~~L~~f~~~~~~~~~~~~iL~~S-~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~l 107 (1183)
+.+|+|......| .| ++||=+++.++|++|++|+.|-.+|-++ +++.++||++++|.+.+....+.....+..-+
T Consensus 3 ddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~elqlv 82 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNELQLV 82 (980)
T ss_pred hHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHHHHH
Confidence 3456666555555 23 6999999999999999999999999777 88999999999999999888888999999999
Q ss_pred HHHHHHHHHhc-----cCCCchHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccCCCh--hhHHHHHHHHHHH
Q 001029 108 IGFCLCFVMQH-----ASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGV--DTQFIGINFLESL 180 (1183)
Q Consensus 108 r~~ll~~l~~~-----~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~lL~~l 180 (1183)
|.-+..|+... ....|.|++||+.++++.+.-..+|+ .|.+|+.++...+.. ++ +-...-|++|.++
T Consensus 83 R~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~----~WnsfF~dlmsv~~~--~s~~~~~dfflkvllaI 156 (980)
T KOG2021|consen 83 RFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPD----CWNSFFDDLMSVFQV--DSAISGLDFFLKVLLAI 156 (980)
T ss_pred HHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHhc--ccchhhHHHHHHHHHHh
Confidence 99999987742 12369999999999999999999988 799999999887763 33 2356677888888
Q ss_pred HhhhCCCCcCCCCCcHHHH---HHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHccccc
Q 001029 181 VSEFSPSTSSAMGLPREFH---EQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDF 257 (1183)
Q Consensus 181 v~E~s~~~ss~~~l~~~~h---~k~~~~F~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f 257 (1183)
=.|.... ++-.+.+.- -..|-..|+.+.++|-+.-.+++..-.. .-++.+...+|+|.-+..||+=
T Consensus 157 dsEiad~---dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n--------~~npgl~~~cLdc~g~fVSWId 225 (980)
T KOG2021|consen 157 DSEIADQ---DVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYEN--------IVNPGLINSCLDCIGSFVSWID 225 (980)
T ss_pred hhHhhhc---cccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHhhhhh
Confidence 8887665 333344433 3456789999999999988888865431 1145788999999999999996
Q ss_pred ccCCCCCccccccccccccccccCCCccccccccCCcchHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhHHHHHH
Q 001029 258 QFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARK 337 (1183)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~l~llf~~~~~~~~~~~~~~~~~~~~l~~~~l~ 337 (1183)
.+- +.+...+++++++... .+++..|-.
T Consensus 226 InL---------------------------------------IaNd~f~nLLy~fl~i-------------eelR~aac~ 253 (980)
T KOG2021|consen 226 INL---------------------------------------IANDYFLNLLYKFLNI-------------EELRIAACN 253 (980)
T ss_pred hhh---------------------------------------hhchhHHHHHHHHHhH-------------HHHHHHHHH
Confidence 655 4456688999887764 568999999
Q ss_pred HHHHHHhcc
Q 001029 338 LIVQLCSLT 346 (1183)
Q Consensus 338 cL~qLasl~ 346 (1183)
|+.++.|=+
T Consensus 254 cilaiVsKk 262 (980)
T KOG2021|consen 254 CILAIVSKK 262 (980)
T ss_pred HHHHHHhcC
Confidence 999988743
No 8
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=2.2e-14 Score=160.18 Aligned_cols=513 Identities=55% Similarity=0.832 Sum_probs=317.5
Q ss_pred cCCcchHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHhccc-CcccCCChhhHHHHHHHHHHhh
Q 001029 291 QPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTG-TVFPSDNGKMQEHHLLQLLSGI 369 (1183)
Q Consensus 291 ~~p~~W~~~l~~~~~l~llf~~~~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~-~~f~~~~~~~r~~~l~~~l~~~ 369 (1183)
+|..+|-+.+++...+.|+-++|...++....++-+.|+++......-..++|++.| -+|+......|.+.-...++|.
T Consensus 2 ~~y~s~~d~Ll~s~~~~Wltnl~~~~~~~f~~~Gf~~d~~V~v~n~~lq~hl~~~~ga~i~~an~V~~R~eee~~~l~~~ 81 (748)
T KOG4541|consen 2 KPYASWCDVLLSSSHVGWLTNLYSSVRQKFDLEGFWLDCPVAVSNRKLQVHLCSLAGAEIFPANNVQMRDEEELLLLTGV 81 (748)
T ss_pred cchHHHHHHHHhcCCcchHHHHHhhHHHHHhhhhhHhhCcHHHHHHHHHHHhcccchhhcccccchhcccHHHHHhhcCC
Confidence 577899999999888888888888766655444444566666666666689999998 5788776556766666667765
Q ss_pred hhhcCC-hhhHHHHhhhCCChhhHHHHHHHHHHHHhhcChhhHHhhhhccCcchhHHHHHHHH------HHHHHHHhh-c
Q 001029 370 LEWVDP-PDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLM------CEVVKVLMM-N 441 (1183)
Q Consensus 370 ~~il~~-~~~~~~~~~~g~~~~~~~~~cr~l~~L~~~~~~~~l~~~~~~~~~~~~l~~l~~l~------~~~~~~~~~-~ 441 (1183)
-...+. +..+.--...|....++-.-|+.+....+....-.+...+.+...+|-...++.+. .+++-...+ .
T Consensus 82 edd~D~s~D~~~~~~~~gr~gae~c~~~~~lle~~~t~lh~~~~~~~~~la~~GS~t~~s~~l~~~~eDqHWLmLVl~~~ 161 (748)
T KOG4541|consen 82 EDDIDPSPDVISKEIEEGRSGAEMCDGCRALLEIGTTTLHVVFDQLLRSLAPFGSLTLLSMLLGEVVEDQHWLMLVLMAN 161 (748)
T ss_pred CccCCcchhHHHHHHhcCchHHHHHHHHHHHHHhcccccHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555544 33333222333333455556665544332211112333333334444443333322 233333333 2
Q ss_pred ccccccchHHHHHHHHHHHHHhhhc-ccccCCCCCCChhhhhhHHHHHHHHHhcccccccccccCCCCccchhhccHHHH
Q 001029 442 NTEEGTWSWEARDILLDTWTTLLVS-LDSTGRNVVLPLEVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAM 520 (1183)
Q Consensus 442 ~~~~~~~~~es~~~lL~~W~~l~~~-~~~~~~~~~~~~~~~~~~~~I~~~yi~srl~~~~~~~~~e~d~~e~~~~d~~~~ 520 (1183)
...|++|..++.+..++.|..+-++ ++..++..-.|+..++.+..+++--+++-+.-....+.-+++.+|. +....-
T Consensus 162 ~~dee~~~~~~~~~~~~~yt~~htsk~D~s~~~q~L~~~ge~~a~s~~~y~~e~d~~I~~~sa~~~~~~~e~--~~v~a~ 239 (748)
T KOG4541|consen 162 STDEETWSYEARDILLDTYTTLHTSKMDGSGGNQWLPPEGEHAAASLFSYIVESDLKIASASATTEDDADEL--ASVSAM 239 (748)
T ss_pred ccccccCCccCCCchHhhhhhhhcccccCCCcccccCCcccchhhhhhhhhhhcchHHHHhHHHhhhhHHHH--HHHHHH
Confidence 3456778899999999999987765 3332222222333333345555433344433332222222222221 111222
Q ss_pred HHHHHHHH---HHhhhchhhhHHHHHHHHHHHHHHHhcccCCCCcchhHHHHHHHH-HHHHhHhccC--CCCCccCChhh
Q 001029 521 DERLSSYA---LIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYSLL-LITGHVLADE--GEGEIPVVPNA 594 (1183)
Q Consensus 521 ~eqLe~i~---~L~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~~~~~~E~L~Wli-~i~g~~l~d~--~~ge~~~iP~~ 594 (1183)
.+.|-.-+ .+.|+ ...+.+.+...+.+.++.+.+..+..+|...-+. .|++ +|+|+++++- +.||+.+.|+.
T Consensus 240 ~~~l~Sp~l~~~l~rf-l~a~~~~~~~~~~~~y~~~s~~~~tv~p~~te~s-~~~~~~ii~kVla~lvn~~sE~~L~~Da 317 (748)
T KOG4541|consen 240 DERLGSPALIARLARF-LDATIPFLAKLFSDHYARLSQGRGTVDPTETEES-VYSLLLIIGKVLADLVNGESETALVPDA 317 (748)
T ss_pred HHhccCHHHHHHHHHH-HHhhhhHHHHHhHHHHHHhcCCCCCCCcccchhh-HHHHHHHHHHHHHHHhcccchhhhhHHH
Confidence 33333333 33333 3556666777778788777766554455444444 4555 6999999988 56799999999
Q ss_pred hhhhhhhhhcccCchHHHHHHHHHHHHhhhcCcccccccCCHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCcc
Q 001029 595 IQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQ 674 (1183)
Q Consensus 595 i~~~~~~~~~~~~~~vv~Li~~ll~l~~~~l~~~~~~~~~Sp~l~~~~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~ 674 (1183)
++-......+...+|++.++....++.+.+.+.+.+-.++||.+.+++||++-.|.-+|+-.+++..++ .
T Consensus 318 ~q~l~~lVe~~~~~~vvv~~e~~~~laeq~~s~~~~l~i~s~p~~~~lmkaLvl~gfa~~d~e~~~n~~----------~ 387 (748)
T KOG4541|consen 318 LQSLFVLVEEANNHPVVVLSESIIKLAEQCLSAEMRLSIFSPPLMEALMKALVLWGFAYLDLEEECNLG----------S 387 (748)
T ss_pred HHHHHHHHHHhccCCeeeccHHHHHHHHHHhccCCcccccCchHHHHHHHHHHHHHHHHhhHHHHHHHH----------H
Confidence 987776666668889999999999999999887777667899999999999999999999765444422 2
Q ss_pred ccchhhHhHHHHhhcCCCCchhHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhccccchhhhcchhHHHHHHHhh
Q 001029 675 HQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFA 754 (1183)
Q Consensus 675 ~~~~~v~~~l~~~f~~~~~g~~~l~~ll~~~~~~L~~~~~e~~v~~~~~~~LL~~l~~~~~~~~~l~~~~~~~~l~~~~~ 754 (1183)
+.+..++.+++.+|.+++.|+...+.+.+.-..+...++++.+... .|++-|
T Consensus 388 ~~LqpL~~Rf~~~~nq~~q~~~~~~Ii~~l~~~~g~a~a~q~d~~~----~Lf~fL------------------------ 439 (748)
T KOG4541|consen 388 NKLQPLPSRFFTYFNQHNQGKFVLDIIVRLSLTSGTAYAGQKDLQR----SLFQFL------------------------ 439 (748)
T ss_pred hhccccHHHHHHHhcccchhhHHHHHHHHHHHhccccccccchhHH----HHHHHH------------------------
Confidence 3344567789999999888888888888888888888877776521 122211
Q ss_pred cchhhhcccchhhHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHhhCCCcccccccchhHHHHHHHH-HHHhhh
Q 001029 755 NDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCL-LERLRG 833 (1183)
Q Consensus 755 ~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~m~pl~~~~~~l~~~~~~~~~~~~~~ii~~v~~l-l~~l~G 833 (1183)
...+|+++|.+.+ .+|-+.++.-+...+-.+.+..+.....++++++.-+..+ +.+++|
T Consensus 440 ------------~~~~~~c~glm~s--------~~~~~~~v~~i~~~~vdvs~k~~~y~~~e~~~~~ly~sclql~~~y~ 499 (748)
T KOG4541|consen 440 ------------VLSAYGCRGLMAS--------NQYVKDLVAHITSSLVDVSNKSDLYNLAEQPDIILYVSCLQLERLYG 499 (748)
T ss_pred ------------HHHHhhhhhHHHH--------hhccHHHHHHHHHHHHHhhhhhhhhccccChhHHHHHHHHHHHHHhh
Confidence 1244566666543 3344556666666666665544433233556766555555 788899
Q ss_pred hhhccCCCcHHHHHHHHHhhHHHHHHHHHHhc
Q 001029 834 AANATEPRTQKAIYEMGFSVMNPVLLLLEVYK 865 (1183)
Q Consensus 834 i~~a~~~~~~~~l~~~l~~~~~~~~~ll~~y~ 865 (1183)
-..+...++....++.-+..+..+.+++..|.
T Consensus 500 ~~~~~r~rt~~a~~Ee~~sdl~lvl~lL~n~l 531 (748)
T KOG4541|consen 500 AASATRPRTQRAIYEEGLSDLNLVLRLLENYL 531 (748)
T ss_pred hhcccCcchHHHHHHhhhhHHHHHHHHHHHHh
Confidence 88888888776667666555666666666553
No 9
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=9.3e-10 Score=126.55 Aligned_cols=581 Identities=16% Similarity=0.166 Sum_probs=305.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCCcHHHHHHHHhcCCc--hhHHHHHHHHHHHHHhhccC
Q 001029 22 PADLAKLQSIMHSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQV--ANARFQAAAAIRDAAMREWS 97 (1183)
Q Consensus 22 ~~d~~~l~~~~~~le~~~~~l~~~~~--r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~--~~~~f~a~~~L~~~i~~~W~ 97 (1183)
.+|.+-|+.+++-|+.. .+|.. |+.++..+.+|+..|+--....+||.+.+. .-++--|--+|++-+..+|+
T Consensus 6 ~p~e~~l~ql~~lLk~s----~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~ 81 (885)
T KOG2023|consen 6 QPDEQGLQQLAQLLKNS----QSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYN 81 (885)
T ss_pred cccHHHHHHHHHHHHhc----cCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhcccccccc
Confidence 34556665555555543 44422 688999999999999988888888866554 46677777789999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccCCChhhHHHHHHHH
Q 001029 98 FLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFL 177 (1183)
Q Consensus 98 ~l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL 177 (1183)
.++++....+|.-+++=+. +.++.+|.-.-.++-.|+-.+- .++|++.++.+.+.+.+ .+..+|.=+..-|
T Consensus 82 ~~~~~~~~yiKs~~l~~lg----d~~~lIr~tvGivITTI~s~~~----~~~wpelLp~L~~~L~s-~d~n~~EgA~~AL 152 (885)
T KOG2023|consen 82 SIPSEVLDYIKSECLHGLG----DASPLIRATVGIVITTIASTGG----LQHWPELLPQLCELLDS-PDYNTCEGAFGAL 152 (885)
T ss_pred CCChHHHHHHHHHHHhhcc----CchHHHHhhhhheeeeeecccc----cccchhHHHHHHHHhcC-CcccccchhHHHH
Confidence 9999888877777766433 3456677665555555554433 33688999999999975 3445666666666
Q ss_pred HHHHhhhCCC-CcCCCCCcHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccc
Q 001029 178 ESLVSEFSPS-TSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWD 256 (1183)
Q Consensus 178 ~~lv~E~s~~-~ss~~~l~~~~h~k~~~~F~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~ 256 (1183)
+-+.++-+.- ++--...+. +-.+++++++. ++ +..++-..++.|+..++
T Consensus 153 ~KIcEDsa~~lds~~~~rpl-----------~~mipkfl~f~--------~h--------~spkiRs~A~~cvNq~i--- 202 (885)
T KOG2023|consen 153 QKICEDSAQFLDSDVLTRPL-----------NIMIPKFLQFF--------KH--------PSPKIRSHAVGCVNQFI--- 202 (885)
T ss_pred HHHHhhhHHHHhhhcccCch-----------HHhHHHHHHHH--------hC--------CChhHHHHHHhhhhhee---
Confidence 6665543322 110001111 11344444432 11 12344567777777433
Q ss_pred cccCCCCCccccccccccccccccCCCccccccccCCcchHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhHHHHH
Q 001029 257 FQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSAR 336 (1183)
Q Consensus 257 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~l~llf~~~~~~~~~~~~~~~~~~~~l~~~~l 336 (1183)
....... ++.-..+++.+|.+.. + .+|+.+...-
T Consensus 203 --~~~~qal---------------------------------~~~iD~Fle~lFalan----D-------~~~eVRk~vC 236 (885)
T KOG2023|consen 203 --IIQTQAL---------------------------------YVHIDKFLEILFALAN----D-------EDPEVRKNVC 236 (885)
T ss_pred --ecCcHHH---------------------------------HHHHHHHHHHHHHHcc----C-------CCHHHHHHHH
Confidence 1111000 0111345566665542 1 2577888777
Q ss_pred HHHHHHHhcccCcccCCChhhHHHHHHHHHHhhhhhcCChhhHHHHhhhCCChhhHHHHHHHHHHHHhhcChhhHHhhhh
Q 001029 337 KLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLK 416 (1183)
Q Consensus 337 ~cL~qLasl~~~~f~~~~~~~r~~~l~~~l~~~~~il~~~~~~~~~~~~g~~~~~~~~~cr~l~~L~~~~~~~~l~~~~~ 416 (1183)
..++-|--+|.+= -.-++.++++-+....++ .+++.=.|.|.....+++..- -...+.
T Consensus 237 ~alv~Llevr~dk--------l~phl~~IveyML~~tqd-----------~dE~VALEACEFwla~aeqpi---~~~~L~ 294 (885)
T KOG2023|consen 237 RALVFLLEVRPDK--------LVPHLDNIVEYMLQRTQD-----------VDENVALEACEFWLALAEQPI---CKEVLQ 294 (885)
T ss_pred HHHHHHHHhcHHh--------cccchHHHHHHHHHHccC-----------cchhHHHHHHHHHHHHhcCcC---cHHHHH
Confidence 7788887766321 233555555544433332 234555688888888886521 111111
Q ss_pred ccCcchhHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHHHHHHHhccc
Q 001029 417 SIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESEL 496 (1183)
Q Consensus 417 ~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~es~~~lL~~W~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~yi~srl 496 (1183)
. ++.. +....+.. |. +.+++ -.||+ . .+ .....|- -++ .|=..+..+|.
T Consensus 295 p-----~l~k---liPvLl~~-M~-Ysd~D-------~~LL~--~--~e------eD~~vpD-ree---DIkPRfhksk~ 343 (885)
T KOG2023|consen 295 P-----YLDK---LIPVLLSG-MV-YSDDD-------IILLK--N--NE------EDESVPD-REE---DIKPRFHKSKE 343 (885)
T ss_pred H-----HHHH---HHHHHHcc-Cc-ccccc-------HHHhc--C--cc------ccccCCc-hhh---hccchhhhchh
Confidence 1 2221 12222221 11 21111 22222 0 00 0001110 000 11123444554
Q ss_pred ccccccccCCCC-ccchh----hccHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhcccCCCCcchhHHHHHH
Q 001029 497 KVASASAMDDNG-EFNYL----QASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEELYS 571 (1183)
Q Consensus 497 ~~~~~~~~~e~d-~~e~~----~~d~~~~~eqLe~i~~L~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~~~~~~E~L~W 571 (1183)
..-.+...+||| |||+. ..||.+.+-.=..+..++..-.++.++.+..++.+... +.+|- .=.-
T Consensus 344 ~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~-------~~~W~----vrEa 412 (885)
T KOG2023|consen 344 HGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLS-------SEEWK----VREA 412 (885)
T ss_pred ccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcC-------cchhh----hhhh
Confidence 443332212221 11111 22566666655566666666677888888888886541 22221 1112
Q ss_pred HHHHHHhHhccCC-CCCccCChhhhhhhhhhhhcccCchHHHHHHHHHHHHhhhcCcccccccCCHHHHHHHHHHHHHHH
Q 001029 572 LLLITGHVLADEG-EGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLARWS 650 (1183)
Q Consensus 572 li~i~g~~l~d~~-~ge~~~iP~~i~~~~~~~~~~~~~~vv~Li~~ll~l~~~~l~~~~~~~~~Sp~l~~~~l~fl~~~~ 650 (1183)
-|+-.|++ |+.+ +|=.|..| .++--++.+.. . . .|-+.+..-|.++||.
T Consensus 413 gvLAlGAI-AEGcM~g~~p~Lp-------------------eLip~l~~~L~----D-K-----kplVRsITCWTLsRys 462 (885)
T KOG2023|consen 413 GVLALGAI-AEGCMQGFVPHLP-------------------ELIPFLLSLLD----D-K-----KPLVRSITCWTLSRYS 462 (885)
T ss_pred hHHHHHHH-HHHHhhhcccchH-------------------HHHHHHHHHhc----c-C-----ccceeeeeeeeHhhhh
Confidence 23445555 3222 33222222 34444444432 1 1 2446667779999997
Q ss_pred HhhcCCcccccccCCCCCCCCCccccchhhHhHHHHhhcCCCCchhHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHH
Q 001029 651 QTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLHAL 730 (1183)
Q Consensus 651 ~~YL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~f~~~~~g~~~l~~ll~~~~~~L~~~~~e~~v~~~~~~~LL~~l 730 (1183)
+ |+..+ . + +++.. .++..+++++.- +..+|-..+| ..|..+
T Consensus 463 ~-wv~~~-~-~------------~~~f~-----------------pvL~~ll~~llD------~NK~VQEAAc-sAfAtl 503 (885)
T KOG2023|consen 463 K-WVVQD-S-R------------DEYFK-----------------PVLEGLLRRLLD------SNKKVQEAAC-SAFATL 503 (885)
T ss_pred h-hHhcC-C-h------------HhhhH-----------------HHHHHHHHHHhc------ccHHHHHHHH-HHHHHH
Confidence 5 88643 1 1 11111 122223333332 2345555666 455544
Q ss_pred hhccccchhhhcchhHHHHHHHhhcchhhhcccchhhHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHhhCCCc
Q 001029 731 VRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKND 810 (1183)
Q Consensus 731 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~m~pl~~~~~~l~~~~~ 810 (1183)
-.. .+..| .|+...+...+... +.+.-.+.-..||-|+|..+-.....=....|.+.+|.|+.++|..+.+.
T Consensus 504 eE~--A~~eL--Vp~l~~IL~~l~~a--f~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~-- 575 (885)
T KOG2023|consen 504 EEE--AGEEL--VPYLEYILDQLVFA--FGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDS-- 575 (885)
T ss_pred HHh--ccchh--HHHHHHHHHHHHHH--HHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcc--
Confidence 432 12222 25666666654321 11111222235787877655433222335679999999999999887533
Q ss_pred ccccccchhHHHHHHHHHHHhhhhhhccCCCc
Q 001029 811 LKNVSQQPDIILLVSCLLERLRGAANATEPRT 842 (1183)
Q Consensus 811 ~~~~~~~~~ii~~v~~ll~~l~Gi~~a~~~~~ 842 (1183)
|+++. -+|+|+..|+.|.+..+
T Consensus 576 ------DKdLf----PLLEClSsia~AL~~gF 597 (885)
T KOG2023|consen 576 ------DKDLF----PLLECLSSIASALGVGF 597 (885)
T ss_pred ------cchHH----HHHHHHHHHHHHHhccc
Confidence 24444 99999999999988763
No 10
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.8e-08 Score=124.22 Aligned_cols=147 Identities=20% Similarity=0.218 Sum_probs=130.2
Q ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHHH
Q 001029 33 HSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF 110 (1183)
Q Consensus 33 ~~le~~~~~l~~~~~--r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ 110 (1183)
+.|+++.+.+.+|+| |++||+.+...-..+.......+|+..+.++.++-+|+..+++.+.+.|+.|+.+.|..||.-
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~ 83 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSS 83 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 345666667788877 799999999665555589999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhCCC
Q 001029 111 CLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPS 187 (1183)
Q Consensus 111 ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~lv~E~s~~ 187 (1183)
++.-+... ..+-||+|++.++|.|.|..-++ .|++.++-+.+.+++ +++..+..++.||+.+++-|+..
T Consensus 84 lL~~~~~E---~~~~vr~k~~dviAeia~~~l~e----~WPell~~L~q~~~S-~~~~~rE~al~il~s~~~~~~~~ 152 (1075)
T KOG2171|consen 84 LLEIIQSE---TEPSVRHKLADVIAEIARNDLPE----KWPELLQFLFQSTKS-PNPSLRESALLILSSLPETFGNT 152 (1075)
T ss_pred HHHHHHhc---cchHHHHHHHHHHHHHHHhcccc----chHHHHHHHHHHhcC-CCcchhHHHHHHHHhhhhhhccc
Confidence 99987765 37899999999999999988766 699999999998886 67889999999999999999776
No 11
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=3.1e-08 Score=113.77 Aligned_cols=337 Identities=15% Similarity=0.107 Sum_probs=205.9
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHHHHHHHHHhccCCCchHHHH
Q 001029 49 AAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQA 128 (1183)
Q Consensus 49 ~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~ 128 (1183)
..|.++|.+|++++++|..|..||..-...++..||+++++.++.+....+|+.+-..+|+-+...+.+-. +.++-++.
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~-~~~~~i~t 80 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQKCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELH-DHPDVIRT 80 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHH-hCCchHHH
Confidence 35899999999999999999999999888999999999999999999999999999999999888877765 44558899
Q ss_pred HHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhCCCCcCCCCCcHHHHHHHHHHhhh
Q 001029 129 KISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLEL 208 (1183)
Q Consensus 129 ~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~lv~E~s~~~ss~~~l~~~~h~k~~~~F~~ 208 (1183)
+++..+|.+.-+ - .+|.+-+.+++...+. .+...+.-|.+|..+.+|..+.++ +..-.| +..|.+
T Consensus 81 QL~vavA~Lal~-~-----~~W~n~I~e~v~~~~~--~~~~~~~lLeiL~VlPEE~~~~~~-----~~~a~R--r~e~~~ 145 (559)
T KOG2081|consen 81 QLAVAVAALALH-M-----PEWVNPIFELVRALSN--KHPAVPILLEILKVLPEETRDIRL-----TVGANR--RHEFID 145 (559)
T ss_pred HHHHHHHHHHHH-h-----HhhcchHHHHHHHhhc--CCccHHHHHHHHHhCcHhhcchhh-----hhhhhh--HHHHHH
Confidence 999888877632 1 1244456666666543 333367899999999999988732 111122 234444
Q ss_pred h---hhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCccccccccccccccccCCCcc
Q 001029 209 D---YLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRS 285 (1183)
Q Consensus 209 ~---~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (1183)
+ .-..+......+|+... ..+...+.++++++. ||--.+-.+-+.
T Consensus 146 ~l~~~~~~~L~~l~~lLe~~~---------l~~~~~l~~Vl~~l~---SWl~~~~~~~d~-------------------- 193 (559)
T KOG2081|consen 146 ELAAQVSKVLVFLSDLLERSD---------LKSSDDLEQVLRCLG---SWLRLHVFPPDQ-------------------- 193 (559)
T ss_pred HHHHhHHHHHHHHHHHHhhcC---------CChhhHHHHHHHHHh---hhhhhccCCHHH--------------------
Confidence 4 23334444444444332 123567888888887 776543321100
Q ss_pred ccccccCCcchHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHhcccCcccCCChhhHHHHHHHH
Q 001029 286 ECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQL 365 (1183)
Q Consensus 286 ~~~~~~~p~~W~~~l~~~~~l~llf~~~~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~~~f~~~~~~~r~~~l~~~ 365 (1183)
+...-.++.+.|.... +.++-..|-+|+..+-. .+.+.+.. + .|-..+
T Consensus 194 -------------v~a~~pLi~l~F~sl~-------------~~~lhe~At~cic~ll~----~~~~~~~~-~-~~~~~l 241 (559)
T KOG2081|consen 194 -------------VLASFPLITLAFRSLS-------------DDELHEEATECICALLY----CSLDRSEG-L-PLAAIL 241 (559)
T ss_pred -------------HHhhhHHHHHHHHHcc-------------cchhhHHHHHHHHHHHH----Hhhhhhcc-C-chhHHH
Confidence 1222235666665443 13466677888877643 12222211 1 244444
Q ss_pred HHhhhhhcCChhhHHHHhhhCCChhhHHHHHHHHHHHHhhcChhhHHhhhhccCcchhHHHHHHHHHHHHHHHhhccccc
Q 001029 366 LSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEE 445 (1183)
Q Consensus 366 l~~~~~il~~~~~~~~~~~~g~~~~~~~~~cr~l~~L~~~~~~~~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~ 445 (1183)
+.+. .++++.-+... .|-+.+.....||++..+...|- .. .+..+..++..+.. ++-.. ..-+
T Consensus 242 ~~~v-~~L~~~~~~a~---~~~d~d~~~a~~RIFtel~eaf~-----~~-i~~np~~~l~~vel----lLl~~---~h~~ 304 (559)
T KOG2081|consen 242 FIGV-IILETAFHLAM---AGEDLDKNEAICRIFTELGEAFV-----VL-ISTNPEEFLRIVEL----LLLVA---GHND 304 (559)
T ss_pred hccc-cccchHHHHhh---cccCHHHHHHHHHHHHHHHHHHH-----HH-HhhCCCcchhHHHH----HHHhc---cCCc
Confidence 4443 35555444433 22245666678888888875431 11 22222334433222 11111 1112
Q ss_pred ccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHHHHHHHhcc
Q 001029 446 GTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASLFALIVESE 495 (1183)
Q Consensus 446 ~~~~~es~~~lL~~W~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~yi~sr 495 (1183)
.+...+-+.+|+++-.++.-. .. .-+..+|++|...-
T Consensus 305 ----~evie~SF~fW~~lse~l~~~-----~~----~~~~~~frpy~~rL 341 (559)
T KOG2081|consen 305 ----TEVIEASFNFWYSLSEELTLT-----DD----DEALGIFRPYFLRL 341 (559)
T ss_pred ----hhhhhhhHHhhhhhHHHHhcc-----cc----HHHHHHhHHHHHHH
Confidence 388899999999987755221 11 12456777775433
No 12
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=0.00016 Score=88.67 Aligned_cols=148 Identities=15% Similarity=0.256 Sum_probs=121.8
Q ss_pred CcHHHHHHHHHHHHHHHHHhhCCCC-HHHHHHHHHhhhcCCCcHHHHHHHHhcCCch-hHHHHHHHHHHHHHhhccCc--
Q 001029 23 ADLAKLQSIMHSIEIACSSIQMHVN-PAAAEATILGLCQSPQPYKACQFILENSQVA-NARFQAAAAIRDAAMREWSF-- 98 (1183)
Q Consensus 23 ~d~~~l~~~~~~le~~~~~l~~~~~-r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~-~~~f~a~~~L~~~i~~~W~~-- 98 (1183)
||.+.+ ++.|.+ ++.++|+ |+.||+.|.++.+.|.-...|-+|.-....+ .|+--|+--+|++|++.|+.
T Consensus 1 md~~~l---~~~~~~---T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~ 74 (1010)
T KOG1991|consen 1 MDLQSL---LQIFRA---TIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHE 74 (1010)
T ss_pred CChHHH---HHHHHH---hcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccC
Confidence 455554 444433 4445454 8999999999999999999888888666666 66999999999999999976
Q ss_pred -------CCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccCCChhhHH
Q 001029 99 -------LTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQF 171 (1183)
Q Consensus 99 -------l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (1183)
+++++|.-+|+-+++++.+. |..+|.++..++-.|+|...|. .|+.+++.+...+++ ++..+..
T Consensus 75 ~~g~~~~I~e~dk~~irenIl~~iv~~----p~~iRvql~~~l~~Ii~~D~p~----~Wp~l~d~i~~~Lqs-~~~~~vy 145 (1010)
T KOG1991|consen 75 APGRPFGIPEEDKAVIRENILETIVQV----PELIRVQLTACLNTIIKADYPE----QWPGLLDKIKNLLQS-QDANHVY 145 (1010)
T ss_pred CCCCcCCCChHHHHHHHHHHHHHHHhC----chHHHHHHHHHHHHHHhcCCcc----cchhHHHHHHHHhcC-cchhhHH
Confidence 47899999999999998865 7999999999999999998876 799999999999985 4556778
Q ss_pred HHHHHHHHHHhhhC
Q 001029 172 IGINFLESLVSEFS 185 (1183)
Q Consensus 172 ~~l~lL~~lv~E~s 185 (1183)
-||-.|..++.-+-
T Consensus 146 ~aLl~l~qL~k~ye 159 (1010)
T KOG1991|consen 146 GALLCLYQLFKTYE 159 (1010)
T ss_pred HHHHHHHHHHHHHh
Confidence 89999999886553
No 13
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.98 E-value=5e-09 Score=105.97 Aligned_cols=148 Identities=16% Similarity=0.212 Sum_probs=115.6
Q ss_pred chHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhCCCCcCCCCCcHHHHHHH
Q 001029 123 EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQC 202 (1183)
Q Consensus 123 ~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~lv~E~s~~~ss~~~l~~~~h~k~ 202 (1183)
|++|++|++.+++.|+++.||+ .|++++.++.+.+.+ ++.++..++.+|..+.+|+...+ ....+.++++..
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~----~Wp~~l~~l~~~~~~--~~~~~~~~L~iL~~l~eEi~~~~--~~~~~~~r~~~l 72 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQ----QWPDFLEDLLQLLQS--SPQHLELVLRILRILPEEITDFR--RSSLSQERRREL 72 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTT----TSTTHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHTSH--CCHSHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChh----hCchHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHhhh--chhhhHHHHHHH
Confidence 6899999999999999999988 689999999999984 68899999999999999997631 124455556666
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCccccccccccccccccCC
Q 001029 203 RISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSS 282 (1183)
Q Consensus 203 ~~~F~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (1183)
+..+++. .+.||+...+++.+.... ....+...+|+|+.++++|.....
T Consensus 73 ~~~l~~~-~~~i~~~l~~~l~~~~~~--------~~~~~~~~~L~~l~s~i~~~~~~~---------------------- 121 (148)
T PF08389_consen 73 KDALRSN-SPDILEILSQILSQSSSE--------ANEELVKAALKCLKSWISWIPIEL---------------------- 121 (148)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHCHC--------CHHHHHHHHHHHHHHHTTTS-HHH----------------------
T ss_pred HHHHHHH-HHHHHHHHHHHHHhhccc--------cHHHHHHHHHHHHHHHHHhCCHHH----------------------
Confidence 6677775 888888888877665421 126788999999999999886554
Q ss_pred CccccccccCCcchHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHH
Q 001029 283 KRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLI 339 (1183)
Q Consensus 283 ~~~~~~~~~~p~~W~~~l~~~~~l~llf~~~~~~~~~~~~~~~~~~~~l~~~~l~cL 339 (1183)
+.+.++++++|++.. ++++...|.+||
T Consensus 122 -----------------i~~~~~l~~~~~~l~-------------~~~~~~~A~~cl 148 (148)
T PF08389_consen 122 -----------------IINSNLLNLIFQLLQ-------------SPELREAAAECL 148 (148)
T ss_dssp -----------------HHSSSHHHHHHHHTT-------------SCCCHHHHHHHH
T ss_pred -----------------hccHHHHHHHHHHcC-------------CHHHHHHHHHhC
Confidence 555668888887652 266899999997
No 14
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=0.00033 Score=83.44 Aligned_cols=138 Identities=13% Similarity=0.070 Sum_probs=100.5
Q ss_pred hCCC-C-HHHHHHHHHhhhcCCC--cHHHHHHHHhcC-CchhHHHHHHHHHHHHHh-----------hccCcCCHHHHHH
Q 001029 43 QMHV-N-PAAAEATILGLCQSPQ--PYKACQFILENS-QVANARFQAAAAIRDAAM-----------REWSFLTADEKKS 106 (1183)
Q Consensus 43 ~~~~-~-r~~Ae~~L~~f~~~~~--~~~~~~~iL~~S-~~~~~~f~a~~~L~~~i~-----------~~W~~l~~~~k~~ 106 (1183)
.+|+ | |+.||+.|.++++..- -......+|-+- ++++++..|.-.||+.+. .+|-.++.+.|++
T Consensus 11 lSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~req 90 (859)
T KOG1241|consen 11 LSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQ 90 (859)
T ss_pred cCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHH
Confidence 4553 2 7999999999997543 234445555444 567999999999987754 7899999999999
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhCC
Q 001029 107 LIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSP 186 (1183)
Q Consensus 107 lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~lv~E~s~ 186 (1183)
+|++++.-+-. ..+.+.+...+++|.|...+-|.. .|+.++..++.-+-..++..+..-.|.-+.-+-++.++
T Consensus 91 VK~~il~tL~~----~ep~~~s~Aaq~va~IA~~ElP~n---~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~p 163 (859)
T KOG1241|consen 91 VKNNILRTLGS----PEPRRPSSAAQCVAAIACIELPQN---QWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDP 163 (859)
T ss_pred HHHHHHHHcCC----CCCCccchHHHHHHHHHHhhCchh---hCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCH
Confidence 99999987542 356677889999999999998884 79999999988775322222445556666655555544
Q ss_pred C
Q 001029 187 S 187 (1183)
Q Consensus 187 ~ 187 (1183)
.
T Consensus 164 e 164 (859)
T KOG1241|consen 164 E 164 (859)
T ss_pred H
Confidence 3
No 15
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.55 E-value=2.4e-07 Score=82.19 Aligned_cols=66 Identities=26% Similarity=0.344 Sum_probs=62.3
Q ss_pred HHHHHHhhhcC-CCcHHHHHHHH-hcCCchhHHHHHHHHHHHHHhhccC--------cCCHHHHHHHHHHHHHHHH
Q 001029 51 AEATILGLCQS-PQPYKACQFIL-ENSQVANARFQAAAAIRDAAMREWS--------FLTADEKKSLIGFCLCFVM 116 (1183)
Q Consensus 51 Ae~~L~~f~~~-~~~~~~~~~iL-~~S~~~~~~f~a~~~L~~~i~~~W~--------~l~~~~k~~lr~~ll~~l~ 116 (1183)
||+.|.+|++. |+.|..|..|+ +.+.+++++++|+..|++.|.++|+ .+|+++|..||+++++.+.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 89999999999 99999999999 5556899999999999999999999 9999999999999999875
No 16
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=6.7e-05 Score=89.28 Aligned_cols=170 Identities=11% Similarity=0.076 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHhhCCCC---HHHHHHHHHhhhcCCCcHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhcc-----CcCCH
Q 001029 31 IMHSIEIACSSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQV-ANARFQAAAAIRDAAMREW-----SFLTA 101 (1183)
Q Consensus 31 ~~~~le~~~~~l~~~~~---r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~-~~~~f~a~~~L~~~i~~~W-----~~l~~ 101 (1183)
+.+.|++| ++++ ++.||+.|.+....|.-......|.-+.++ ..+++.|+--+|+.|.|.| ..+|+
T Consensus 2 vvq~Lq~A-----ts~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~ 76 (978)
T KOG1993|consen 2 VVQVLQQA-----TSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPP 76 (978)
T ss_pred HHHHHHHh-----cCCCcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCH
Confidence 35677777 4455 589999999999999998888777655555 5899999999999999999 46899
Q ss_pred HHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccC---CChhhHHHHHHHHH
Q 001029 102 DEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGI---HGVDTQFIGINFLE 178 (1183)
Q Consensus 102 ~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~lL~ 178 (1183)
++|..||.-++....+ ....+..+...++++|++.++|- +|++.++++.+.++++ |+...+--++-.|.
T Consensus 77 EEK~~iR~~Ll~~~~E----~~nQlaiQ~AvlisrIARlDyPr----eWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~ 148 (978)
T KOG1993|consen 77 EEKDFIRCNLLLHSDE----ENNQLAIQNAVLISRIARLDYPR----EWPDLFPDLLGQLQSSLGTGDSLVQHRILITLH 148 (978)
T ss_pred HHHHHHHHHHHHhccc----chhHHHHHHHHHHHHHHhcCCCc----cchhHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 9999999988876543 34677888899999999988766 7999999999888765 34455566777888
Q ss_pred HHHhhhCCCCcCCCCCcHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 001029 179 SLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALS 224 (1183)
Q Consensus 179 ~lv~E~s~~~ss~~~l~~~~h~k~~~~F~~~~L~~if~~~~~~L~~ 224 (1183)
.++-++++.| -.++++.|.+. -+.|+.+....+-+
T Consensus 149 ~ilK~Lat~R----------L~a~rk~F~el-~~~I~~~l~~~l~s 183 (978)
T KOG1993|consen 149 HILKALATKR----------LLADRKAFYEL-APEILTILAPILWS 183 (978)
T ss_pred HHHHHHHHhH----------HhhhhHHHHHH-hHHHHHHHHHHHhc
Confidence 8888887772 24567778886 67787755444433
No 17
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=0.18 Score=60.85 Aligned_cols=140 Identities=16% Similarity=0.222 Sum_probs=112.8
Q ss_pred HHhhCCCC-HHHHHHHHHhhhcCCCcHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhccCc-----CCHHHHHHHHHHHH
Q 001029 40 SSIQMHVN-PAAAEATILGLCQSPQPYKACQFILENS-QVANARFQAAAAIRDAAMREWSF-----LTADEKKSLIGFCL 112 (1183)
Q Consensus 40 ~~l~~~~~-r~~Ae~~L~~f~~~~~~~~~~~~iL~~S-~~~~~~f~a~~~L~~~i~~~W~~-----l~~~~k~~lr~~ll 112 (1183)
+++-+.++ |..||+.|.++.+.|.-...|-+|+..- -...|+--|+--++++|.|.|+. ++++++.+.|.++.
T Consensus 11 qTldada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~e~K~~li 90 (970)
T COG5656 11 QTLDADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKSEAKKYLI 90 (970)
T ss_pred HHhccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccHHHHHHHH
Confidence 34444443 8999999999999999999999988665 45799999999999999999987 45678999999999
Q ss_pred HHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhh
Q 001029 113 CFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEF 184 (1183)
Q Consensus 113 ~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~lv~E~ 184 (1183)
+-+......-|.-.|..+...+..|..-+|+.. -|+ +++....++++ +...+...||..+.++-.-+
T Consensus 91 enil~v~l~sp~~tr~~l~ail~~I~seD~ps~---~wg-l~p~~~nll~s-~ea~~vy~gLlcl~elfkay 157 (970)
T COG5656 91 ENILDVFLYSPEVTRTALNAILVNIFSEDKPSD---LWG-LFPKAANLLRS-SEANHVYTGLLCLEELFKAY 157 (970)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHhccccCchh---hcc-cchHHHHhhcc-cchhHHHHHHHHHHHHHHHH
Confidence 988877655566677788888888999999853 576 88888899875 34567789998888876443
No 18
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.73 Score=56.56 Aligned_cols=163 Identities=12% Similarity=0.137 Sum_probs=120.8
Q ss_pred HHHHHHHHHhhhcCCCcHHHHHHHHhcCC-chhHHHHHHHHHHHHHhhccC-------cCCHHHHHHHHHHHHHHHHhcc
Q 001029 48 PAAAEATILGLCQSPQPYKACQFILENSQ-VANARFQAAAAIRDAAMREWS-------FLTADEKKSLIGFCLCFVMQHA 119 (1183)
Q Consensus 48 r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~-~~~~~f~a~~~L~~~i~~~W~-------~l~~~~k~~lr~~ll~~l~~~~ 119 (1183)
|+-||+.|.+...++.---..-.++.+++ .+.++.-|+..+|+.|+|+|. .+..++|+.||.-++....+.
T Consensus 22 rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s- 100 (960)
T KOG1992|consen 22 RKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSS- 100 (960)
T ss_pred CchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcC-
Confidence 79999999999988665556677788877 679999999999999999993 567789999999999976654
Q ss_pred CCCchHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccCCChhhHHHHHHHHH-HHHhhhCCC-CcCCCCCcHH
Q 001029 120 SSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLE-SLVSEFSPS-TSSAMGLPRE 197 (1183)
Q Consensus 120 ~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~-~lv~E~s~~-~ss~~~l~~~ 197 (1183)
|.-+..++..++..|.|+++|+ .|++.+++++..+++ ++- +...|..-.. ++---|... || .--|.
T Consensus 101 ---~~~iQ~qlseal~~Ig~~DFP~----kWptLl~dL~~~ls~-~D~-~~~~gVL~tahsiFkr~R~efrS---daL~~ 168 (960)
T KOG1992|consen 101 ---PFNIQKQLSEALSLIGKRDFPD----KWPTLLPDLVARLSS-GDF-NVINGVLVTAHSIFKRYRPEFRS---DALWL 168 (960)
T ss_pred ---cHHHHHHHHHHHHHHhccccch----hhHHHHHHHHhhccc-cch-HHHHHHHHHHHHHHHhcCccccc---HHHHH
Confidence 5788999999999999999999 699999999999874 333 3334433333 344444443 33 22355
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 001029 198 FHEQCRISLELDYLKTFYCWARDAALS 224 (1183)
Q Consensus 198 ~h~k~~~~F~~~~L~~if~~~~~~L~~ 224 (1183)
.-.+|--+|..- |..+|+-..+..+.
T Consensus 169 EIK~vLd~f~~P-lt~Lf~~t~~l~~~ 194 (960)
T KOG1992|consen 169 EIKLVLDRFAEP-LTDLFRKTMELIQR 194 (960)
T ss_pred HHHHHHHhhHhH-HHHHHHHHHHHHhh
Confidence 556666667664 77777766665543
No 19
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.92 E-value=1.4 Score=51.92 Aligned_cols=106 Identities=15% Similarity=0.179 Sum_probs=82.3
Q ss_pred HHHHHHHHHhhhcCCCcHH----HHHHHHhcCCchhHHHHHHHHHHHHHh-----------hccCcCCHHHHHHHHHHHH
Q 001029 48 PAAAEATILGLCQSPQPYK----ACQFILENSQVANARFQAAAAIRDAAM-----------REWSFLTADEKKSLIGFCL 112 (1183)
Q Consensus 48 r~~Ae~~L~~f~~~~~~~~----~~~~iL~~S~~~~~~f~a~~~L~~~i~-----------~~W~~l~~~~k~~lr~~ll 112 (1183)
|..||+.|+++++.. -.+ .++-+-+.-+++|.++.|.-+|++.+. .+|-.++++.|+++|...+
T Consensus 22 rl~aE~ql~~l~~~d-F~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al 100 (858)
T COG5215 22 RLRAEAQLLELQSGD-FEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMAL 100 (858)
T ss_pred cccHHHHHHHhcccc-HHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 788999999998633 222 223334666789999999999988765 6899999999999998888
Q ss_pred HHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHh
Q 001029 113 CFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAV 161 (1183)
Q Consensus 113 ~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~ 161 (1183)
.-+.. ..+-..+...++++.|...+-|.. .|+.+..+++..+
T Consensus 101 ~aL~s----~epr~~~~Aaql~aaIA~~Elp~~---~wp~lm~~mv~nv 142 (858)
T COG5215 101 RALKS----PEPRFCTMAAQLLAAIARMELPNS---LWPGLMEEMVRNV 142 (858)
T ss_pred HHhcC----CccHHHHHHHHHHHHHHHhhCccc---cchHHHHHHHHhc
Confidence 86543 345567788899999999998884 6888888887665
No 20
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=96.90 E-value=0.055 Score=66.67 Aligned_cols=145 Identities=9% Similarity=0.112 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHhhhcCCCcHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhccCc-----CCHHHH
Q 001029 31 IMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENS-QVANARFQAAAAIRDAAMREWSF-----LTADEK 104 (1183)
Q Consensus 31 ~~~~le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S-~~~~~~f~a~~~L~~~i~~~W~~-----l~~~~k 104 (1183)
++.+++.+ +-..|+.++.||+.|.+....++---....|-... .+-..+.-|+--+++.|.++|.. +.++++
T Consensus 6 vv~~~~~a--qs~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~p~e~ 83 (947)
T COG5657 6 VVKQLDLA--QSPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSILPDEN 83 (947)
T ss_pred HHHHHHhh--cCCCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCCCccc
Confidence 34555555 11233347999999999999998666666666555 44578888899999999999954 777888
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhh
Q 001029 105 KSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEF 184 (1183)
Q Consensus 105 ~~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~lv~E~ 184 (1183)
.-||.-++..+.+-. .+..-+...+++.|+...+|+ +|++.++++...++. ++.....-.+..+..++.++
T Consensus 84 v~IR~~l~~lii~s~----n~l~iq~a~avs~IA~~DfPd----eWpTL~~DL~~~Ls~-~D~~tn~~~L~~~h~Ifk~~ 154 (947)
T COG5657 84 VLIRDELFSLIISSS----NQLQIQNALAVSRIARLDFPD----EWPTLVPDLLSLLSE-KDMVTNENSLRVLHHIFKRL 154 (947)
T ss_pred hHHHHHHHHHHHccc----chHHHHHHHHHHHHHhccCcc----cchhHHHHHHhhhcc-cchHHHHHHHHHHHHHHHHH
Confidence 899999999988653 444448889999999999998 799999999999874 44455556666677777666
Q ss_pred CC
Q 001029 185 SP 186 (1183)
Q Consensus 185 s~ 186 (1183)
..
T Consensus 155 r~ 156 (947)
T COG5657 155 RR 156 (947)
T ss_pred hh
Confidence 53
No 21
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.39 E-value=4.3 Score=50.73 Aligned_cols=142 Identities=11% Similarity=0.086 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHhhCCC-C-HHHHHHHHHhhhcCCCcHHHH-HHHHhcCCchhHHHHHHHHHHHHHhhccCcC-------
Q 001029 30 SIMHSIEIACSSIQMHV-N-PAAAEATILGLCQSPQPYKAC-QFILENSQVANARFQAAAAIRDAAMREWSFL------- 99 (1183)
Q Consensus 30 ~~~~~le~~~~~l~~~~-~-r~~Ae~~L~~f~~~~~~~~~~-~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l------- 99 (1183)
++++-|+++ .++. + |.+||..|.++...+.--... .-.+..-.+--.+-+|+..|++.|.++|...
T Consensus 5 ~ii~~L~~~----ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~ 80 (1005)
T KOG2274|consen 5 AIIELLSGS----LSADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYP 80 (1005)
T ss_pred HHHHHHHhh----cCCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCC
Confidence 345555544 4543 2 899999999998877743433 3334443455677788899999999999654
Q ss_pred ---CHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccCCChhhHHHHHHH
Q 001029 100 ---TADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINF 176 (1183)
Q Consensus 100 ---~~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 176 (1183)
+.+.|.-||+-+++.+. +-.+.+++....++..|..-.||| +|++.+.-+.+.+.+ ++.++..-++.+
T Consensus 81 ~~~~e~~K~~IRe~Ll~~l~----~sn~ki~~~vay~is~Ia~~D~Pd----~WpElv~~i~~~l~~-~n~n~i~~am~v 151 (1005)
T KOG2274|consen 81 LIVSEEVKALIREQLLNLLD----DSNSKIRSAVAYAISSIAAVDYPD----EWPELVPFILKLLSS-GNENSIHGAMRV 151 (1005)
T ss_pred CcccHHHHHHHHHHHHhhhh----ccccccchHHHHHHHHHHhccCch----hhHHHHHHHHHHHhc-cchhhhhhHHHH
Confidence 44667777777777665 346889999999999999999999 799999999988875 566666677777
Q ss_pred HHHHHhhh
Q 001029 177 LESLVSEF 184 (1183)
Q Consensus 177 L~~lv~E~ 184 (1183)
|.++..|.
T Consensus 152 L~el~~ev 159 (1005)
T KOG2274|consen 152 LAELSDEV 159 (1005)
T ss_pred HHHHHHHH
Confidence 77776554
No 22
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=64.39 E-value=5.3e+02 Score=35.42 Aligned_cols=215 Identities=10% Similarity=0.027 Sum_probs=103.7
Q ss_pred HHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHhhccccchhhhcchhHHHHHHHhhcchhhhcccchhhHHHHHHHHHH
Q 001029 698 LDIIVRISMTTLVSYPGEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLS 777 (1183)
Q Consensus 698 l~~ll~~~~~~L~~~~~e~~v~~~~~~~LL~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~~l~~~ 777 (1183)
.|.+++.+...+.. ....+-. +.|..|+.-...-..++..|.++.-+..- +-.-+.++|..-...+|+-
T Consensus 814 fD~yLk~Il~~l~e--~~ialRt----kAlKclS~ive~Dp~vL~~~dvq~~Vh~R-----~~DssasVREAaldLvGrf 882 (1692)
T KOG1020|consen 814 FDPYLKLILSVLGE--NAIALRT----KALKCLSMIVEADPSVLSRPDVQEAVHGR-----LNDSSASVREAALDLVGRF 882 (1692)
T ss_pred hHHHHHHHHHHhcC--chHHHHH----HHHHHHHHHHhcChHhhcCHHHHHHHHHh-----hccchhHHHHHHHHHHhhh
Confidence 56677777777641 1122222 23444444444455667778877766541 1011334565666777764
Q ss_pred HhcCCCcccchHHHHHHHHHHHHHHHHhhCCCcccccccchhHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHhhHHHH
Q 001029 778 AYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPV 857 (1183)
Q Consensus 778 ~~~~~~~~~~~~~~~~~m~pl~~~~~~l~~~~~~~~~~~~~~ii~~v~~ll~~l~Gi~~a~~~~~~~~l~~~l~~~~~~~ 857 (1183)
+. ..++.-.+|+.++..-+.+ .++.. ++.++.++|+ +|..... |...-.++
T Consensus 883 vl--~~~e~~~qyY~~i~erIlD-----------tgvsV----RKRvIKIlrd---ic~e~pd---------f~~i~~~c 933 (1692)
T KOG1020|consen 883 VL--SIPELIFQYYDQIIERILD-----------TGVSV----RKRVIKILRD---ICEETPD---------FSKIVDMC 933 (1692)
T ss_pred hh--ccHHHHHHHHHHHHhhcCC-----------CchhH----HHHHHHHHHH---HHHhCCC---------hhhHHHHH
Confidence 43 2355556666665432211 23334 4444466666 6665433 22235667
Q ss_pred HHHHHHhcCChH-HHHHHHHHHHHHhhc-cccccccc-hhhhHHHHHHHHHHHhhhccc--Cc---cccc--cccccccc
Q 001029 858 LLLLEVYKHESA-VVYLLLKFVVDWVDG-QISYLEVQ-ETNIVIDFCTRLLQLYSSHNI--GK---MLMT--QSSCLLGE 927 (1183)
Q Consensus 858 ~~ll~~y~~~~~-v~~~iL~~~~e~v~~-~~~~l~~~-~~~~lf~~~~~ll~~y~~~~~--~~---~~~~--~~~~~~~~ 927 (1183)
.+++..-.+..+ |...+.+-|-++=-. -.....++ .+..++-++..+...+.-.+. .+ .++. ........
T Consensus 934 akmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~ 1013 (1692)
T KOG1020|consen 934 AKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKES 1013 (1692)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhh
Confidence 788888888777 555555544443211 11112221 123333333322222210000 00 0000 00011234
Q ss_pred chhhhhhhHHHHHHHHHHhhcCCCc
Q 001029 928 AKTEKYKDLRALFQLLSNLCSKDLV 952 (1183)
Q Consensus 928 ~~~e~~k~l~~~l~lL~~~l~~~~~ 952 (1183)
..+..++.+...++++.+++.....
T Consensus 1014 ~~~v~~~~v~~~~~L~~~cl~~~i~ 1038 (1692)
T KOG1020|consen 1014 VKPVALAKVTHVLNLLTHCLVEKIS 1038 (1692)
T ss_pred hhHHHHhhcchHHHHHHHHHHHHHH
Confidence 5667788888889999888876653
No 23
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.80 E-value=7.2e+02 Score=33.06 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=53.1
Q ss_pred chhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHH
Q 001029 988 YPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHY 1052 (1183)
Q Consensus 988 yPkl~~~ff~Ll~~l~~~~~~~l~~L~~~~f~~ll~sl~~Gl~~~d~~I~~~~l~~l~~L~~~~~ 1052 (1183)
-++.|++-..-|..+.+-|++.+.. .+-.++..+.-|++.+++.|--.+|.++..+.+-+.
T Consensus 361 ~w~~R~AaL~Als~i~EGc~~~m~~----~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~ 421 (1075)
T KOG2171|consen 361 EWKERHAALLALSVIAEGCSDVMIG----NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ 421 (1075)
T ss_pred CHHHHHHHHHHHHHHHcccHHHHHH----HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc
Confidence 3777888888889999999998753 577899999999999999999999999999987764
No 24
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=51.53 E-value=1.5e+02 Score=28.03 Aligned_cols=88 Identities=7% Similarity=-0.063 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHhhhcCCCcHHHHHHHH---hcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHHHHHHHHH-----h
Q 001029 46 VNPAAAEATILGLCQSPQPYKACQFIL---ENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVM-----Q 117 (1183)
Q Consensus 46 ~~r~~Ae~~L~~f~~~~~~~~~~~~iL---~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~-----~ 117 (1183)
|+.....++..-..+.++....+...| =+++++.+.+.|+.+|+.++.+.-..+-.+-+. +.|+.+++. .
T Consensus 16 p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~--~~~~~~l~~~~~~~~ 93 (115)
T cd00197 16 PDWPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVAS--NDFAVELLKFDKSKL 93 (115)
T ss_pred CCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHH--hHHHHHHHHhhcccc
Confidence 344444444443444444433332222 124589999999999999999874333222221 335555432 1
Q ss_pred ccCCCchHHHHHHHHHHH
Q 001029 118 HASSPEGYVQAKISSVAA 135 (1183)
Q Consensus 118 ~~~~~~~~v~~~l~~~~a 135 (1183)
.+.+.+..|++++..++.
T Consensus 94 ~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 94 LGDDVSTNVREKAIELVQ 111 (115)
T ss_pred ccCCCChHHHHHHHHHHH
Confidence 233457889998877663
No 25
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=44.15 E-value=3.2e+02 Score=29.18 Aligned_cols=131 Identities=17% Similarity=0.140 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhhChhhhhcCCHH---HHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhcc
Q 001029 993 HDYFSLLSHLLEVYPETVAQLSTE---AFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGI 1069 (1183)
Q Consensus 993 ~~ff~Ll~~l~~~~~~~l~~L~~~---~f~~ll~sl~~Gl~~~d~~I~~~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~ 1069 (1183)
..-..-++.++..+.. ...++. .+..++..+...++...+.|++.+|.++..++....+..
T Consensus 25 ~~al~~L~~l~~~~~~--~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~-------------- 88 (228)
T PF12348_consen 25 VEALQKLRSLIKGNAP--EDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHF-------------- 88 (228)
T ss_dssp HHHHHHHHHHHHH-B-------HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGG--------------
T ss_pred HHHHHHHHHHHHcCCc--cccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhH--------------
Confidence 3444555555555510 112222 234445677788888888899999999999997763221
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhccCCCchhHHHhhhHHHHHhcCH--HHH-HHHHHHHHHcCCCchhHHHHHHHHHH
Q 001029 1070 NNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEP--RLY-QRLGSELIERQANPPFKSRLANALQS 1146 (1183)
Q Consensus 1070 ~~~~~~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~~~~--~~f-~~~~~~li~~q~~~~~~~~l~~~F~~ 1146 (1183)
......++..++.. ..+.+..+..++..++..++...+ ... .........+ .+|..|....+++..
T Consensus 89 --------~~~~~~~l~~Ll~~--~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~-Kn~~vR~~~~~~l~~ 157 (228)
T PF12348_consen 89 --------EPYADILLPPLLKK--LGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKS-KNPQVREECAEWLAI 157 (228)
T ss_dssp --------HHHHHHHHHHHHHG--GG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT--S-HHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHH--HccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHH
Confidence 12233444444442 223333345677788888875444 222 3333333322 457888888888888
Q ss_pred hhcC
Q 001029 1147 LTSS 1150 (1183)
Q Consensus 1147 L~~~ 1150 (1183)
.+..
T Consensus 158 ~l~~ 161 (228)
T PF12348_consen 158 ILEK 161 (228)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 8765
No 26
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=43.05 E-value=3.4e+02 Score=30.49 Aligned_cols=97 Identities=12% Similarity=0.101 Sum_probs=64.1
Q ss_pred HHHhcccCCCCCChhHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhCCCCcCCCCCcHHHHHHHHHHhhhhhhHHHHH
Q 001029 137 LMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYC 216 (1183)
Q Consensus 137 i~K~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~lv~E~s~~~ss~~~l~~~~h~k~~~~F~~~~L~~if~ 216 (1183)
-+++.|.+. .|+-++.-+-.++-. .++....-||.+|..++....... -..|+++++..+|+
T Consensus 107 ~~~~~~i~~---~~~liiP~iL~llDD-~~~~~K~~G~~lL~~ll~~~~~~~--------------~~~L~~tGl~~v~~ 168 (282)
T PF10521_consen 107 QLDRPWISQ---HWPLIIPPILNLLDD-YSPEIKIQGCQLLHHLLEKVPAAE--------------WDILRRTGLFSVFE 168 (282)
T ss_pred cCCcchHHH---hhhHHHhhHHHHhcC-CCHHHHHHHHHHHHHHHHhCChhh--------------hHHHHHcChHHHHH
Confidence 456666553 677777777777753 257888999999999998776661 33567778888888
Q ss_pred HHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcc
Q 001029 217 WARDAALSVTKQIIESDAAASEVKACTAALRLLHQILN 254 (1183)
Q Consensus 217 ~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Ls 254 (1183)
-++. .+..-.|......+...++..+..++..++.
T Consensus 169 ~al~---~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~ 203 (282)
T PF10521_consen 169 DALF---PCLYYLPPITPEDESLELLQAAYPALLSLLK 203 (282)
T ss_pred HHHH---HHhhcCCCCCCchhhHHHHHHHHHHHHHHHH
Confidence 5543 3333223333333456688888888877754
No 27
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=40.25 E-value=7.5e+02 Score=29.97 Aligned_cols=137 Identities=18% Similarity=0.220 Sum_probs=81.3
Q ss_pred ChHHHHHHHHHHHHHhhccccccccchhhhHHHHHHHHHHHhhhcccCcccccccccccccchhhhhhhHHHHHHHHHHh
Q 001029 867 ESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNL 946 (1183)
Q Consensus 867 ~~~v~~~iL~~~~e~v~~~~~~l~~~~~~~lf~~~~~ll~~y~~~~~~~~~~~~~~~~~~~~~~e~~k~l~~~l~lL~~~ 946 (1183)
+......+|.|+.++++....++..+....+-+.+..+ ..+ ...+ .+|..+++++.-+
T Consensus 147 ~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~i---C~~----------------Ts~~---~di~~~L~vldai 204 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTI---CKS----------------TSSE---DDIEACLSVLDAI 204 (464)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH---Hhc----------------cCcH---HHHHHHHHHHHHH
Confidence 44556789999999999888887765544444444433 111 0111 4455788888888
Q ss_pred hcCCCcccCCccccccccchhHHHHHhhhccccccccccccchhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHH-
Q 001029 947 CSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTL- 1025 (1183)
Q Consensus 947 l~~~~~~f~~~~~~d~~~~~~~v~~~~l~~~iPli~~dll~yPkl~~~ff~Ll~~l~~~~~~~l~~L~~~~f~~ll~sl- 1025 (1183)
++-+.++-+ .+ ..+...|+.+... .++++.-.+.++.+++.|... +.+..+++.+
T Consensus 205 i~y~~iP~~-------sl---~~~i~vLCsi~~~--------~~l~~~~w~~m~nL~~S~~g~------~~i~~L~~iL~ 260 (464)
T PF11864_consen 205 ITYGDIPSE-------SL---SPCIEVLCSIVNS--------VSLCKPSWRTMRNLLKSHLGH------SAIRTLCDILR 260 (464)
T ss_pred HHcCcCChH-------HH---HHHHHHHhhHhcc--------cccchhHHHHHHHHHcCccHH------HHHHHHHHHHc
Confidence 775554311 12 2222334444443 288888888999998765443 3345555555
Q ss_pred -HhhccCCchHHHHHHHHHHHHHHH
Q 001029 1026 -DFGLHHQDSEIVDMCLRALRALAS 1049 (1183)
Q Consensus 1026 -~~Gl~~~d~~I~~~~l~~l~~L~~ 1049 (1183)
...=...+..+.+.+..++..+..
T Consensus 261 ~~~~~~~~~~~~lRGAv~~l~~ll~ 285 (464)
T PF11864_consen 261 SPDPQNKRDINVLRGAVFFLRMLLW 285 (464)
T ss_pred ccCccccccHHHHhhHHHHHHHHHh
Confidence 222234567778888877777663
No 28
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=40.21 E-value=3.8e+02 Score=26.57 Aligned_cols=63 Identities=14% Similarity=0.101 Sum_probs=42.3
Q ss_pred CCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHHHHHHHHHhcc-----CCCchHHHHHHHHHHHHHHHhcccC
Q 001029 75 SQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHA-----SSPEGYVQAKISSVAAQLMKRGWLD 144 (1183)
Q Consensus 75 S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~-----~~~~~~v~~~l~~~~a~i~K~~W~~ 144 (1183)
++|+.++.+|+++|+.++.++-..+ ..-..=|.|+-+.+.-.. +..+.-|++++..++ +.|.+
T Consensus 49 ~~n~~v~l~AL~LLe~~vkNCG~~f--h~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li-----~~W~~ 116 (139)
T cd03567 49 SPQEKEALQALTVLEACMKNCGERF--HSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELL-----YSWTL 116 (139)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCHHH--HHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHH-----HHHHH
Confidence 7889999999999999999984332 233333667666433221 235788998887654 45654
No 29
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=40.04 E-value=82 Score=32.34 Aligned_cols=56 Identities=21% Similarity=0.355 Sum_probs=45.4
Q ss_pred hhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHH
Q 001029 989 PKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYH 1051 (1183)
Q Consensus 989 Pkl~~~ff~Ll~~l~~~~~~~l~~L~~~~f~~ll~sl~~Gl~~~d~~I~~~~l~~l~~L~~~~ 1051 (1183)
=++|+..|+++..+.+.++..+ + +..+++.+..|+.- +.+|-..|+.++..|+...
T Consensus 41 LelRK~ayE~lytlLd~~~~~~---~---~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~ 96 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRI---D---ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLA 96 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS-------HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---C---HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhC
Confidence 3689999999999999777664 2 56679999999988 9999999999999987544
No 30
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.35 E-value=1.1e+03 Score=31.63 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=39.7
Q ss_pred hhhhHHHHHHHHHHHh--hChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHH
Q 001029 989 PKLCHDYFSLLSHLLE--VYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALA 1048 (1183)
Q Consensus 989 Pkl~~~ff~Ll~~l~~--~~~~~l~~L~~~~f~~ll~sl~~Gl~~~d~~I~~~~l~~l~~L~ 1048 (1183)
-+.++.-|.+|-.+.. .+.+..-.-+++.+..++.-|-.|+-...+.++...+-++..+.
T Consensus 752 ~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 752 VKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred HHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 4578899999999994 33333322236788899999999977766655444444444433
No 31
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.53 E-value=1.3e+02 Score=27.07 Aligned_cols=74 Identities=23% Similarity=0.195 Sum_probs=43.5
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHhhCCCC-HHHHHHHHHhhhc-CCCcHHH---HHHHHh-cCCchhHHHHHHHHHHH
Q 001029 17 GGGGGPADLAKLQSIMHSIEIACSSIQMHVN-PAAAEATILGLCQ-SPQPYKA---CQFILE-NSQVANARFQAAAAIRD 90 (1183)
Q Consensus 17 ~~~~~~~d~~~l~~~~~~le~~~~~l~~~~~-r~~Ae~~L~~f~~-~~~~~~~---~~~iL~-~S~~~~~~f~a~~~L~~ 90 (1183)
|+|+-.++...+..+++-|....+.--.|.| |+.|++....+++ ..++--. +-.+|+ =|++|..-+||=+.+=+
T Consensus 4 ~~~~~~d~~e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPNmP~h~RT~iw~ 83 (93)
T COG1698 4 GQGLMNDSEEKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPNMPLHARTLIWN 83 (93)
T ss_pred hhcchhhhHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 4455566777787888888876655455556 7888888777775 2222222 234443 34555666665544433
No 32
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=36.96 E-value=7.1e+02 Score=34.25 Aligned_cols=153 Identities=19% Similarity=0.230 Sum_probs=101.1
Q ss_pred hhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhc
Q 001029 989 PKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAG 1068 (1183)
Q Consensus 989 Pkl~~~ff~Ll~~l~~~~~~~l~~L~~~~f~~ll~sl~~Gl~~~d~~I~~~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~ 1068 (1183)
|++.+.+ +.+.+.+-....++|..++..++++-..++...+.++.....+-|..|...+. +|+..|.
T Consensus 839 ~~l~~~~----~~~~~~~~s~~t~FPakql~~il~~~~~~~~~~~~~~~~~~~~pl~~l~~~y~-------~g~~~H~-- 905 (2196)
T KOG0368|consen 839 PNLDKSL----ESLVAKSASRITQFPAKQLAKILDAHLATLNRAEREVLFVNIQPLLKLVSRYS-------GGLEAHA-- 905 (2196)
T ss_pred hhHHHHH----HHHHHHHhhhcccCcHHHHHHHHHHHhhccccccchhhhhhhhHHHHHHHHhc-------ccHHHHH--
Confidence 5555544 44444444445689999999999999999999999999888888888876552 3444442
Q ss_pred cCCCCCCCchhHHHHHHHHHHHH-HHhccCCCchhHHHhhhHHHHHhcCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHh
Q 001029 1069 INNSNGNPEEGVLSRFLRSLLQL-LLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQANPPFKSRLANALQSL 1147 (1183)
Q Consensus 1069 ~~~~~~~~~~~ll~~ll~~l~~~-~l~~~~~~~~~~~~s~~l~~Li~~~~~~f~~~~~~li~~q~~~~~~~~l~~~F~~L 1147 (1183)
..++.++|+--++. -+|+..+. -..+.++.|=--+...+.+.+..+++.+. -..+..|.-+.-..
T Consensus 906 ---------~~v~~~Lle~Yl~VEk~F~~~~~----~~e~~i~~lr~~~~~d~~kVv~~i~SHs~-i~~KN~Lv~~ll~~ 971 (2196)
T KOG0368|consen 906 ---------KEVVHDLLEEYLEVEKLFNGRDS----HYEDVILRLREENKKDLKKVVDIILSHSQ-IKSKNKLVLALLDQ 971 (2196)
T ss_pred ---------HHHHHHHHHHHHHHHHHhccCcc----hHHHHHHHHHHhhhhHHHHHHHHHHcchh-hhhhhHHHHHHHHH
Confidence 35566666665554 35554443 23466666654555557788888887754 35566666666555
Q ss_pred hcCCCCCCCcChhhHHHHHHHHHHHHH
Q 001029 1148 TSSNQLSSSLDRVNYQRFRKNLTNFLI 1174 (1183)
Q Consensus 1148 ~~~~~~~~~l~~~nr~~F~~~l~~F~~ 1174 (1183)
+.+ .+.+.-+.|++.|.++..
T Consensus 972 l~~------~s~~~~~~f~~iL~~l~~ 992 (2196)
T KOG0368|consen 972 LKP------PSSKVSDEFRDILRKLTE 992 (2196)
T ss_pred hcC------CCCCCCHHHHHHHHHHHh
Confidence 543 245777888888887753
No 33
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=36.59 E-value=1.6e+02 Score=25.86 Aligned_cols=79 Identities=16% Similarity=0.120 Sum_probs=49.4
Q ss_pred HHhhCCCC---HHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHHHHHHHHH
Q 001029 40 SSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVM 116 (1183)
Q Consensus 40 ~~l~~~~~---r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~ 116 (1183)
+.+...++ |..|=..|.++. +++..+.....| ++.++.++..|+.+|... . ..+....+.+.+.
T Consensus 6 ~~l~~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i--------~---~~~~~~~L~~~l~ 72 (88)
T PF13646_consen 6 QLLQNDPDPQVRAEAARALGELG-DPEAIPALIELL-KDEDPMVRRAAARALGRI--------G---DPEAIPALIKLLQ 72 (88)
T ss_dssp HHHHTSSSHHHHHHHHHHHHCCT-HHHHHHHHHHHH-TSSSHHHHHHHHHHHHCC--------H---HHHTHHHHHHHHT
T ss_pred HHHhcCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh--------C---CHHHHHHHHHHHc
Confidence 33334455 566777777664 567788888888 678899999999888854 1 1223444555433
Q ss_pred hccCCCchHHHHHHHHHH
Q 001029 117 QHASSPEGYVQAKISSVA 134 (1183)
Q Consensus 117 ~~~~~~~~~v~~~l~~~~ 134 (1183)
+ +....|+......+
T Consensus 73 ~---~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 73 D---DDDEVVREAAAEAL 87 (88)
T ss_dssp C----SSHHHHHHHHHHH
T ss_pred C---CCcHHHHHHHHhhc
Confidence 2 23566777776655
No 34
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=35.79 E-value=1.4e+02 Score=29.52 Aligned_cols=98 Identities=14% Similarity=0.022 Sum_probs=50.5
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHhhhcCCCcHHHHHHHH---hcCCchhHHHHHHHHHHHHHhhccCcCCHHH-HHHHHHH
Q 001029 35 IEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFIL---ENSQVANARFQAAAAIRDAAMREWSFLTADE-KKSLIGF 110 (1183)
Q Consensus 35 le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL---~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~-k~~lr~~ 110 (1183)
+|.|+......+|-...-++....+.++..-..+...| =.+.|+.++..|+.+|+.++.++-..+-.+- +...-+.
T Consensus 10 i~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~ 89 (140)
T PF00790_consen 10 IEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDE 89 (140)
T ss_dssp HHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHH
T ss_pred HHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHH
Confidence 55565444433443444444444555554443333333 1248999999999999999999732221110 1112233
Q ss_pred HHHHHHhccCCCchH--HHHHHHHHH
Q 001029 111 CLCFVMQHASSPEGY--VQAKISSVA 134 (1183)
Q Consensus 111 ll~~l~~~~~~~~~~--v~~~l~~~~ 134 (1183)
+...+.... .... |++++..++
T Consensus 90 l~~l~~~~~--~~~~~~Vk~k~l~ll 113 (140)
T PF00790_consen 90 LVKLIKSKK--TDPETPVKEKILELL 113 (140)
T ss_dssp HHHHHHHTT--THHHSHHHHHHHHHH
T ss_pred HHHHHccCC--CCchhHHHHHHHHHH
Confidence 333333332 2333 888887665
No 35
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=35.08 E-value=86 Score=25.08 Aligned_cols=55 Identities=24% Similarity=0.219 Sum_probs=41.7
Q ss_pred hhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q 001029 989 PKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRAL 1047 (1183)
Q Consensus 989 Pkl~~~ff~Ll~~l~~~~~~~l~~L~~~~f~~ll~sl~~Gl~~~d~~I~~~~l~~l~~L 1047 (1183)
|.++.+-...|..+.+.+++.+. .....++..+.-.|+..+.+|...++.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~----~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQ----PYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHH----HHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 55666777777776666666643 36778888899999988899999999888654
No 36
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=34.59 E-value=7e+02 Score=30.00 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHhhCCCcccccccchhHHHHHHHHHHHhhhhhhccCCCcHHHHHH
Q 001029 769 SLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYE 848 (1183)
Q Consensus 769 ~l~~~l~~~~~~~~~~~~~~~~~~~~m~pl~~~~~~l~~~~~~~~~~~~~~ii~~v~~ll~~l~Gi~~a~~~~~~~~l~~ 848 (1183)
-+|||+-+++....+. ...+...++.-+...+..++..+.. +..- -.+++.+..+++-+.......+-+
T Consensus 45 ylMk~iMRvl~~~~e~--~~p~~~~il~~L~~il~~v~kNPsn------P~Fn---HylFEsi~~lir~~~~~~~~~v~~ 113 (435)
T PF03378_consen 45 YLMKCIMRVLSVLQED--ILPIAVEILQHLTAILKEVSKNPSN------PRFN---HYLFESIGALIRFVCEADPEAVSQ 113 (435)
T ss_dssp HHHHHHHHHHHHSTTT--TGGGHHHHHHHHHHHHHHHHTS---------HHHH---HHHHHHHHHHHHHS-GGGHH---H
T ss_pred HHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHhCCCC------cchh---hhHHHHHHHHHHhccCCChhHHHH
Confidence 5788888877644332 2334567777777777777765432 1111 033444444444322211111112
Q ss_pred HHHhh-HHHHHHHHHHhcCChHHHHHHHHHHHHHhhccc-ccccc-----------c-----hhhhHHHHHHHHHHHhhh
Q 001029 849 MGFSV-MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQI-SYLEV-----------Q-----ETNIVIDFCTRLLQLYSS 910 (1183)
Q Consensus 849 ~l~~~-~~~~~~ll~~y~~~~~v~~~iL~~~~e~v~~~~-~~l~~-----------~-----~~~~lf~~~~~ll~~y~~ 910 (1183)
|.+. +|.+..+++. +-.|.+-.++++++-++.... ..+.. + .++ ...+.++++.|.+
T Consensus 114 -~E~~L~P~f~~ILq~--dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gn--iPalvrLL~a~i~ 188 (435)
T PF03378_consen 114 -FEEALFPPFQEILQQ--DVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGN--IPALVRLLQAYIK 188 (435)
T ss_dssp -HHHHHHHHHHHHHHT--T-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTT--HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCC--cCcHHHHHHHHHH
Confidence 2322 6666666663 223444445555555554433 11111 1 122 2567788888876
Q ss_pred cccCcccccccccccccchhhhhhhHHHHHHHHHHhhcCCC
Q 001029 911 HNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDL 951 (1183)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~e~~k~l~~~l~lL~~~l~~~~ 951 (1183)
+..... ..-..+..++.++..++++.-
T Consensus 189 k~~~~i--------------~~~~~l~~iLgvFQkLi~sk~ 215 (435)
T PF03378_consen 189 KDPSFI--------------VANNQLEPILGVFQKLIASKA 215 (435)
T ss_dssp HHGGG------------------S-CHHHHHHHHHHHT-TT
T ss_pred hCchhh--------------cchhhHHHHHHHHHHHHCCCC
Confidence 542111 111233357777777777663
No 37
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=34.25 E-value=1.6e+03 Score=32.16 Aligned_cols=102 Identities=16% Similarity=0.240 Sum_probs=61.6
Q ss_pred chhHHHHHHHHHHHHHhhccCcCCHHH-------HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCC
Q 001029 77 VANARFQAAAAIRDAAMREWSFLTADE-------KKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSD 149 (1183)
Q Consensus 77 ~~~~~f~a~~~L~~~i~~~W~~l~~~~-------k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~ 149 (1183)
|..+.+||+-.|+....+- ++.++ ++-||-|. +++++. ...-|+..+.+++..|+...- +.-...
T Consensus 1150 n~~va~fAidsLrQLs~kf---le~eEL~~f~FQkefLkPfe--~im~~s--~~~eVrE~ILeCv~qmI~s~~-~nIkSG 1221 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKF---LEREELANYNFQNEFMKPFV--IVMRKS--NAVEIRELIIRCVSQMVLSRV-NNVKSG 1221 (1780)
T ss_pred chhHHHHHHHHHHHHHHHh---cchhhhhchhHHHHHHHHHH--HHHHhc--CchHHHHHHHHHHHHHHHHHH-hhhhcC
Confidence 5678899999999987663 33333 44444333 445543 344677777777777763211 111224
Q ss_pred hhHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhCCC
Q 001029 150 KEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPS 187 (1183)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~lv~E~s~~ 187 (1183)
|.++|.=+...... ..+.....|...+.-++.||-..
T Consensus 1222 WktIF~VLs~aa~d-~~e~iV~lAFetl~~I~~d~f~~ 1258 (1780)
T PLN03076 1222 WKSMFMVFTTAAYD-DHKNIVLLAFEIIEKIIREYFPY 1258 (1780)
T ss_pred cHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHhhhhh
Confidence 66666666555432 34566778888888888776543
No 38
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=33.98 E-value=3.7e+02 Score=26.26 Aligned_cols=57 Identities=11% Similarity=-0.035 Sum_probs=37.7
Q ss_pred CCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHHHHHHHHHhcc---CCCchHHHHHHHHHH
Q 001029 75 SQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHA---SSPEGYVQAKISSVA 134 (1183)
Q Consensus 75 S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~---~~~~~~v~~~l~~~~ 134 (1183)
+.|+.++..|+.+|+.++.++=..+ ..-..=+.|+.+. .... +..+.-|++++..++
T Consensus 48 ~~n~~vql~AL~lLd~~vkNcg~~f--~~~i~s~~fl~~l-~~l~~~~~~~~~~Vk~kil~ll 107 (133)
T cd03561 48 YGNPHVQLLALTLLELLVKNCGKPF--HLQVADKEFLLEL-VKIAKNSPKYDPKVREKALELI 107 (133)
T ss_pred CCCHHHHHHHHHHHHHHHHhCChHH--HHHHhhHHHHHHH-HHHhCCCCCCCHHHHHHHHHHH
Confidence 4688999999999999999974332 1222225666663 3322 145778888887765
No 39
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.69 E-value=8.5e+02 Score=31.19 Aligned_cols=93 Identities=14% Similarity=0.171 Sum_probs=57.4
Q ss_pred cCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCChhHH
Q 001029 74 NSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAF 153 (1183)
Q Consensus 74 ~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~ 153 (1183)
+|+|.|+.-.|+++|-... ++|....+---+-+.+..+ .+|||+|...+..++.+.. |+ -.+.|
T Consensus 117 ~s~nq~vVglAL~alg~i~-------s~EmardlapeVe~Ll~~~----~~~irKKA~Lca~r~irK~-P~----l~e~f 180 (866)
T KOG1062|consen 117 NSSNQYVVGLALCALGNIC-------SPEMARDLAPEVERLLQHR----DPYIRKKAALCAVRFIRKV-PD----LVEHF 180 (866)
T ss_pred cCCCeeehHHHHHHhhccC-------CHHHhHHhhHHHHHHHhCC----CHHHHHHHHHHHHHHHHcC-ch----HHHHh
Confidence 3456777777777776653 4444444444444443333 5899999999999998763 22 23456
Q ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHhh
Q 001029 154 FSQVHQAVLGIHGVDTQFIGINFLESLVSE 183 (1183)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~lL~~lv~E 183 (1183)
+....+.+.. .+.....-++.++.++..+
T Consensus 181 ~~~~~~lL~e-k~hGVL~~~l~l~~e~c~~ 209 (866)
T KOG1062|consen 181 VIAFRKLLCE-KHHGVLIAGLHLITELCKI 209 (866)
T ss_pred hHHHHHHHhh-cCCceeeeHHHHHHHHHhc
Confidence 6666666653 2334446677777777654
No 40
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.42 E-value=4.7e+02 Score=33.30 Aligned_cols=180 Identities=22% Similarity=0.244 Sum_probs=99.0
Q ss_pred cccccchhhhHHHHHHHHHHHhh-C-hhh-hhcCCHHHHHH-HHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCC
Q 001029 983 GDLLKYPKLCHDYFSLLSHLLEV-Y-PET-VAQLSTEAFAH-VLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAG 1058 (1183)
Q Consensus 983 ~dll~yPkl~~~ff~Ll~~l~~~-~-~~~-l~~L~~~~f~~-ll~sl~~Gl~~~d~~I~~~~l~~l~~L~~~~~~~~~~~ 1058 (1183)
+.+..|-|+...|++.|+.++.. | |+. +..+|+.-++- +++.+. =+-+.|.+....=++.|+.+++..-.+.+.|
T Consensus 212 ~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLr-iLGq~d~daSd~M~DiLaqvatntdsskN~G 290 (866)
T KOG1062|consen 212 DALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLR-ILGQNDADASDLMNDILAQVATNTDSSKNAG 290 (866)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHH-HhcCCCccHHHHHHHHHHHHHhcccccccch
Confidence 47778999999999999999884 3 333 45676654433 333333 3566788888888889988886654333333
Q ss_pred CccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhccCCCchhHHHhhhHHHHHhcCHHHHHHHHHHHHHcC--CCchh
Q 001029 1059 KVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQ--ANPPF 1136 (1183)
Q Consensus 1059 ~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~~~~~~f~~~~~~li~~q--~~~~~ 1136 (1183)
+.-++.-|.|+.... ..+.+.---+..+=..++..+-+.- ..+=+.|.-.|-.+++..++....++.=- ||+..
T Consensus 291 nAILYE~V~TI~~I~--~~~~LrvlainiLgkFL~n~d~Nir--YvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SI 366 (866)
T KOG1062|consen 291 NAILYECVRTIMDIR--SNSGLRVLAINILGKFLLNRDNNIR--YVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSI 366 (866)
T ss_pred hHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHhcCCcccee--eeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHH
Confidence 212221122211111 0111111111111111122222221 23445666667777778777777776532 56666
Q ss_pred HHHHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHh
Q 001029 1137 KSRLANALQSLTSSNQLSSSLDRVNYQRFRKNLTNFLIEV 1176 (1183)
Q Consensus 1137 ~~~l~~~F~~L~~~~~~~~~l~~~nr~~F~~~l~~F~~~v 1176 (1183)
+.|-.|-.-.|.++ .|-+-..+.+-+|+..+
T Consensus 367 krralELs~~lvn~---------~Nv~~mv~eLl~fL~~~ 397 (866)
T KOG1062|consen 367 KRRALELSYALVNE---------SNVRVMVKELLEFLESS 397 (866)
T ss_pred HHHHHHHHHHHhcc---------ccHHHHHHHHHHHHHhc
Confidence 66666666666553 45556666666666554
No 41
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=33.40 E-value=71 Score=22.38 Aligned_cols=30 Identities=23% Similarity=0.186 Sum_probs=24.8
Q ss_pred HHHHHHhhccCCchHHHHHHHHHHHHHHHH
Q 001029 1021 VLGTLDFGLHHQDSEIVDMCLRALRALASY 1050 (1183)
Q Consensus 1021 ll~sl~~Gl~~~d~~I~~~~l~~l~~L~~~ 1050 (1183)
++..+..++++.+.+|-..++.++..++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 456777889999999999999999998864
No 42
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=31.43 E-value=3.2e+02 Score=33.46 Aligned_cols=90 Identities=17% Similarity=0.196 Sum_probs=64.8
Q ss_pred cCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCChhH-
Q 001029 74 NSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEA- 152 (1183)
Q Consensus 74 ~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~- 152 (1183)
+++|++++-.|+.+|-... +++-...+-..+.+.+.. ..++||.+.+.++..+.|. .|+ .-+.
T Consensus 89 ~~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~v~~ll~~----~~~~VRk~A~~~l~~i~~~-~p~----~~~~~ 152 (526)
T PF01602_consen 89 NSPNPYIRGLALRTLSNIR-------TPEMAEPLIPDVIKLLSD----PSPYVRKKAALALLKIYRK-DPD----LVEDE 152 (526)
T ss_dssp CSSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHHHHS----SSHHHHHHHHHHHHHHHHH-CHC----CHHGG
T ss_pred cCCCHHHHHHHHhhhhhhc-------ccchhhHHHHHHHHHhcC----CchHHHHHHHHHHHHHhcc-CHH----HHHHH
Confidence 3678899999999998864 456666666666665443 3579999999999999988 333 2223
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHH
Q 001029 153 FFSQVHQAVLGIHGVDTQFIGINFLESL 180 (1183)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~lL~~l 180 (1183)
+++.+.+++.. .++.....++.++.++
T Consensus 153 ~~~~l~~lL~d-~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 153 LIPKLKQLLSD-KDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHTTH-SSHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccC-CcchhHHHHHHHHHHH
Confidence 68888888854 4567777788888777
No 43
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=30.34 E-value=9.5e+02 Score=28.17 Aligned_cols=101 Identities=22% Similarity=0.192 Sum_probs=54.6
Q ss_pred hhhhhhHHHHHHHHHHhhcCCCc-ccCCccccccccchhHHHHHhhhccccccccccccchhhhHHHHHHHHHHHhhChh
Q 001029 930 TEKYKDLRALFQLLSNLCSKDLV-DFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPE 1008 (1183)
Q Consensus 930 ~e~~k~l~~~l~lL~~~l~~~~~-~f~~~~~~d~~~~~~~v~~~~l~~~iPli~~dll~yPkl~~~ff~Ll~~l~~~~~~ 1008 (1183)
+.+.|| ..+.++..+-.+... .-|+...+ ...++.-|--..++|-+..+--.+|=++-...+++....
T Consensus 268 ~w~~KD--~Al~Li~ala~k~~t~~~Gvt~~~----~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr----- 336 (370)
T PF08506_consen 268 NWRSKD--GALYLIGALASKGSTTKSGVTQTN----ELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFR----- 336 (370)
T ss_dssp -HHHHH--HHHHHHHHHHBSS--BTTB-S-B-----TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHG-----
T ss_pred cHHHHH--HHHHHHHHHHhhhccccCCccccc----ccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHH-----
Confidence 455666 455555555555432 22321110 122333355566677544444566766666665555444
Q ss_pred hhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHH
Q 001029 1009 TVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRA 1043 (1183)
Q Consensus 1009 ~l~~L~~~~f~~ll~sl~~Gl~~~d~~I~~~~l~~ 1043 (1183)
..+|++.+..++..+...|++.+.-|-..+.-+
T Consensus 337 --~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 337 --NQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp --GGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred --hhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 247889999999999999999888776665543
No 44
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=29.88 E-value=2.1e+02 Score=26.45 Aligned_cols=107 Identities=13% Similarity=-0.024 Sum_probs=60.1
Q ss_pred cHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHH-----HHHHHHHHHHhccCCCchHHHHHHHHHHHHHH
Q 001029 64 PYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKS-----LIGFCLCFVMQHASSPEGYVQAKISSVAAQLM 138 (1183)
Q Consensus 64 ~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~-----lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~ 138 (1183)
..+.+..+|.+. ++.++..|+.+|....... ++.+.. .-..+++++.. ..+-|+...+.++..+.
T Consensus 8 ~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~-----~~~~~~~~~~~~i~~l~~~l~~----~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 8 GLPALVSLLSSS-DENVQREAAWALSNLSAGN-----NDNIQAVVEAGGLPALVQLLKS----EDEEVVKAALWALRNLA 77 (120)
T ss_pred ChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCC-----HHHHHHHHHCCChHHHHHHHhC----CCHHHHHHHHHHHHHHc
Confidence 455566666644 4788999999998876552 333332 23344444332 34677888888888887
Q ss_pred HhcccCCCCCChhHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 001029 139 KRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLV 181 (1183)
Q Consensus 139 K~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~lv 181 (1183)
..+......-....++..+.+.+.. .+......++.+|..+.
T Consensus 78 ~~~~~~~~~~~~~g~l~~l~~~l~~-~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 78 AGPEDNKLIVLEAGGVPKLVNLLDS-SNEDIQKNATGALSNLA 119 (120)
T ss_pred cCcHHHHHHHHHCCChHHHHHHHhc-CCHHHHHHHHHHHHHhh
Confidence 6443110000001245555555543 34556667777666654
No 45
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=29.20 E-value=4.6e+02 Score=26.17 Aligned_cols=57 Identities=12% Similarity=0.078 Sum_probs=36.8
Q ss_pred CCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHHHHHHHHHhccCC-CchHHHHHHHHHH
Q 001029 75 SQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASS-PEGYVQAKISSVA 134 (1183)
Q Consensus 75 S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~-~~~~v~~~l~~~~ 134 (1183)
++|+.++.+|+++|+.++.++-..+=.+ ..=|.|+=++ .....+ .+.-|++++..++
T Consensus 48 ~~n~~v~l~AL~LLe~~vkNCG~~fh~e--vask~Fl~eL-~kl~~~~~~~~Vk~kil~li 105 (144)
T cd03568 48 HKDPNVQLRALTLLDACAENCGKRFHQE--VASRDFTQEL-KKLINDRVHPTVKEKLREVV 105 (144)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHH--HhhHHHHHHH-HHHhcccCCHHHHHHHHHHH
Confidence 5789999999999999999985433211 1224555443 222212 5678888877655
No 46
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=29.09 E-value=5.8e+02 Score=26.53 Aligned_cols=106 Identities=19% Similarity=0.122 Sum_probs=63.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCc
Q 001029 20 GGPADLAKLQSIMHSIEIACSSIQMHV-NPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSF 98 (1183)
Q Consensus 20 ~~~~d~~~l~~~~~~le~~~~~l~~~~-~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~ 98 (1183)
.+..|..++ .++.++.+++...+ +.++|.+.|.+.++.|..|+.-..++ ..-.++..+--...-.|..
T Consensus 59 ~~~~nl~~l----~~v~~l~~~~~~~~~~~~ea~~~L~~I~~~~~~y~~~~~~l-------~~~l~~~~fa~lfgg~~~~ 127 (193)
T PF06738_consen 59 PRGVNLDKL----AAVNRLSRRIVAGQLSLEEAIERLDEIDREPPRYPPWLVIL-------AAGLASAAFALLFGGSWID 127 (193)
T ss_pred CCCcCHHHH----HHHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCCHHHHHH-------HHHHHHHHHHHHHCCCHHH
Confidence 466788888 66777777776543 57999999999999997666544444 1122222333334455544
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Q 001029 99 LTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQL 137 (1183)
Q Consensus 99 l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i 137 (1183)
+-..--.++--+++.....+- ..++++.+-+...++.+
T Consensus 128 ~~~a~i~g~~~~~~~~~~~r~-~~~~~~~~~~aa~~~~~ 165 (193)
T PF06738_consen 128 MIVAFILGLLVGLLRQLLSRR-RLNSFIQEFIAAFLASL 165 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHH
Confidence 444445555555555555553 45666666554444433
No 47
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=28.92 E-value=4.2e+02 Score=26.31 Aligned_cols=60 Identities=8% Similarity=0.049 Sum_probs=37.8
Q ss_pred hcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHHHHHHHHHhc---cCCCchHHHHHHHHHH
Q 001029 73 ENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQH---ASSPEGYVQAKISSVA 134 (1183)
Q Consensus 73 ~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~---~~~~~~~v~~~l~~~~ 134 (1183)
..++|+.++.+|+++|+.++.++-..+ ..-..=|+|+-+.+.+. ..+.+.-|++++..++
T Consensus 48 ~~~~n~~v~l~aL~LLe~~vkNCG~~f--h~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li 110 (141)
T cd03565 48 NGNKNHKEVMLTLTVLETCVKNCGHRF--HVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALI 110 (141)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHccHHH--HHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHH
Confidence 446789999999999999999985333 22223355665522222 1134567888776644
No 48
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=27.71 E-value=5.2e+02 Score=26.33 Aligned_cols=107 Identities=13% Similarity=0.180 Sum_probs=70.9
Q ss_pred cCCchhHHHHHHHHHHHHHhhc-cCcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHh--cccCCCC---
Q 001029 74 NSQVANARFQAAAAIRDAAMRE-WSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKR--GWLDFTS--- 147 (1183)
Q Consensus 74 ~S~~~~~~f~a~~~L~~~i~~~-W~~l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~--~W~~~~~--- 147 (1183)
+|++++.++.|+..++..+... |..+-..-..- -+-++..+.+ ..+..+....+.++..|.-+ +|++-..
T Consensus 35 ~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W-~~~Ll~~L~~---~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~ 110 (165)
T PF08167_consen 35 QSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQW-LRALLSILEK---PDPPSVLEAAIITLTRLFDLIRGKPTLTREIA 110 (165)
T ss_pred CCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHhcCCCchHHHHh
Confidence 6777999999999999998886 87764443333 3335554443 34677888888888888854 4555211
Q ss_pred -CChhHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhCCC
Q 001029 148 -SDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPS 187 (1183)
Q Consensus 148 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~lv~E~s~~ 187 (1183)
..-+.|+.-+.+.+. ++.....++..|..++.-|.++
T Consensus 111 tp~l~~~i~~ll~l~~---~~~~~~~~l~~L~~ll~~~ptt 148 (165)
T PF08167_consen 111 TPNLPKFIQSLLQLLQ---DSSCPETALDALATLLPHHPTT 148 (165)
T ss_pred hccHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHCCcc
Confidence 112445555555553 2455678899999999887766
No 49
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=27.02 E-value=5.7e+02 Score=26.70 Aligned_cols=165 Identities=13% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCChhHHHHHH-----------HHHhccCCChhhHHHHHHHHHHHHhhhCCCCcCCCCC
Q 001029 126 VQAKISSVAAQLMKRGWLDFTSSDKEAFFSQV-----------HQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGL 194 (1183)
Q Consensus 126 v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~lL~~lv~E~s~~~ss~~~l 194 (1183)
||-....++..++|..=+-.--..|..|+++- ...+....++..+..++..|.++.+- +.. .+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~g-sk~-----~L 75 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEG-SKP-----FL 75 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHc-cHH-----HH
Q ss_pred cHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCccccccccc
Q 001029 195 PREFHEQCRI-SLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRKISINVFSA 273 (1183)
Q Consensus 195 ~~~~h~k~~~-~F~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~~~~~~~~~~~~ 273 (1183)
......+.+. +|.. |..-....+..++...-.....+. +..++.+.++|+....+=-+-....
T Consensus 76 ~~Ae~~~~~~~sFts--lS~tLa~~i~~lH~~Ll~~L~~E~---~~~~l~q~lK~la~Lv~~tPY~rL~----------- 139 (182)
T PF13251_consen 76 AQAEESKGPSGSFTS--LSSTLASMIMELHRGLLLALQAEK---SPPVLTQLLKCLAVLVQATPYHRLP----------- 139 (182)
T ss_pred HHHHhcCCCCCCccc--HHHHHHHHHHHHHHHHHHHHhccc---ccHHHHHHHHHHHHHHccCChhhcC-----------
Q ss_pred cccccccCCCccccccccCCcchHHHhhccchHHHHHH-HHHHhhhcccCCCCCCCchhHHHHHHHHHHHHhcccCc
Q 001029 274 GVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLN-LYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSLTGTV 349 (1183)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~l~llf~-~~~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl~~~~ 349 (1183)
++++.-+++ +...+++. |++....++.|+.-|.|.....
T Consensus 140 -----------------------------~~ll~~~v~~v~~~l~~~--------d~~v~v~~l~~~~~l~s~~~~~ 179 (182)
T PF13251_consen 140 -----------------------------PGLLTEVVTQVRPLLRHR--------DPNVRVAALSCLGALLSVQPPL 179 (182)
T ss_pred -----------------------------HhHHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCCCCC
No 50
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=26.32 E-value=5.7e+02 Score=25.43 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=36.5
Q ss_pred CCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHH
Q 001029 75 SQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVA 134 (1183)
Q Consensus 75 S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~~ 134 (1183)
++|+.++.+|+.+|+.++.++-..+- .-..=|.|+-++..-..+..+.-|++++..++
T Consensus 52 ~~n~~vql~AL~LLe~~vkNCG~~fh--~evas~~fl~~l~~l~~~~~~~~Vk~kil~li 109 (142)
T cd03569 52 SKNPNVQLYALLLLESCVKNCGTHFH--DEVASREFMDELKDLIKTTKNEEVRQKILELI 109 (142)
T ss_pred CCChHHHHHHHHHHHHHHHHCCHHHH--HHHhhHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 48899999999999999999743321 11222445544322111245677888887655
No 51
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=25.66 E-value=7.5e+02 Score=25.44 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=39.7
Q ss_pred hhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHH
Q 001029 989 PKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALAS 1049 (1183)
Q Consensus 989 Pkl~~~ff~Ll~~l~~~~~~~l~~L~~~~f~~ll~sl~~Gl~~~d~~I~~~~l~~l~~L~~ 1049 (1183)
|.++..-.-.+.-++-.||.. +...+..+...|+..++.|-+.++..+..|..
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~--------ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~ 54 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNL--------VEPYLPNLYKCLRDEDPLVRKTALLVLSHLIL 54 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHH--------HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 566666666777777666654 34556667778889999999999999999873
No 52
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=24.47 E-value=6.4e+02 Score=24.68 Aligned_cols=57 Identities=11% Similarity=0.028 Sum_probs=33.3
Q ss_pred CCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHHHHHHHHHhccC--CCchHHHHHHHHHH
Q 001029 75 SQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHAS--SPEGYVQAKISSVA 134 (1183)
Q Consensus 75 S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~--~~~~~v~~~l~~~~ 134 (1183)
++|+.++..|+.+|+.++.++-..+-. -..=+.|+- .+..... ...+-|++++..++
T Consensus 48 ~~n~~v~l~AL~lLe~~vkNcg~~f~~--ev~s~~fl~-~L~~l~~~~~~~~~Vk~kil~li 106 (133)
T smart00288 48 NKNPHVALLALTLLDACVKNCGSKFHL--EVASKEFLN-ELVKLIKPKYPLPLVKKRILELI 106 (133)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHH--HHHhHHHHH-HHHHHHcCCCCcHHHHHHHHHHH
Confidence 688999999999999999997433211 112233443 2232211 12233888876654
No 53
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=23.99 E-value=7.1e+02 Score=25.25 Aligned_cols=60 Identities=20% Similarity=0.147 Sum_probs=38.0
Q ss_pred HHHHHHHHhhChhhhhcCC--HHHH----HHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhh
Q 001029 996 FSLLSHLLEVYPETVAQLS--TEAF----AHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKET 1055 (1183)
Q Consensus 996 f~Ll~~l~~~~~~~l~~L~--~~~f----~~ll~sl~~Gl~~~d~~I~~~~l~~l~~L~~~~~~~~ 1055 (1183)
..+++.+.+.+...+.+-| +... ..++.++...+.+.+..|...+++++..+...+....
T Consensus 43 LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~L 108 (168)
T PF12783_consen 43 LELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHL 108 (168)
T ss_pred HHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666555332 1111 2345556666666779999999999999987775443
No 54
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=23.56 E-value=1.3e+03 Score=27.44 Aligned_cols=157 Identities=13% Similarity=0.102 Sum_probs=73.7
Q ss_pred hcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCChhH
Q 001029 73 ENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEA 152 (1183)
Q Consensus 73 ~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~ 152 (1183)
.++.++.++-.++..+--.+ ++|.. .+ .+..++-..........+.-.+.+...+++-|+|-=-.-.++ .-..
T Consensus 199 ~~~~~~~~~~~~~~~la~Lv-NK~~~--~~---~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~-~~~~ 271 (415)
T PF12460_consen 199 LSSEDEFSRLAALQLLASLV-NKWPD--DD---DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP-LATE 271 (415)
T ss_pred HcCCChHHHHHHHHHHHHHH-cCCCC--hh---hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc-hHHH
Confidence 44555666666666666444 44633 22 223333222222211223334444555555555422211112 2346
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHhhhCCCCcCCCCCcHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 001029 153 FFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIES 232 (1183)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~lL~~lv~E~s~~~ss~~~l~~~~h~k~~~~F~~~~L~~if~~~~~~L~~~~~~~~~~ 232 (1183)
++..+.+.+. +++....+-+-+..++.+... -++.+.|-..|.-+++ ++|...+..|-+..+..
T Consensus 272 ~~~~L~~lL~---~~~~g~~aA~~f~il~~d~~~------~l~~~~~a~vklLykQ----R~F~~~~p~L~~~~~~~--- 335 (415)
T PF12460_consen 272 LLDKLLELLS---SPELGQQAAKAFGILLSDSDD------VLNKENHANVKLLYKQ----RFFTQVLPKLLEGFKEA--- 335 (415)
T ss_pred HHHHHHHHhC---ChhhHHHHHHHHhhHhcCcHH------hcCccccchhhhHHhH----HHHHHHHHHHHHHHhhc---
Confidence 7778888775 555556666666666666322 2222345555544443 44554443332222110
Q ss_pred chhhhHHHHHHHHHHHHHHHccccc
Q 001029 233 DAAASEVKACTAALRLLHQILNWDF 257 (1183)
Q Consensus 233 ~~~~~~~~l~~~~L~l~~~~Lsw~f 257 (1183)
+...-...|..+..+|.+.+
T Consensus 336 -----~~~~k~~yL~ALs~ll~~vP 355 (415)
T PF12460_consen 336 -----DDEIKSNYLTALSHLLKNVP 355 (415)
T ss_pred -----ChhhHHHHHHHHHHHHhhCC
Confidence 11123455666667776555
No 55
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=22.07 E-value=3.6e+02 Score=27.49 Aligned_cols=117 Identities=22% Similarity=0.267 Sum_probs=62.7
Q ss_pred hhhhHHHHHHHHHHHhhC-hhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhh
Q 001029 989 PKLCHDYFSLLSHLLEVY-PETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAA 1067 (1183)
Q Consensus 989 Pkl~~~ff~Ll~~l~~~~-~~~l~~L~~~~f~~ll~sl~~Gl~~~d~~I~~~~l~~l~~L~~~~~~~~~~~~~~~~~~~~ 1067 (1183)
|+-+-.=..|+..+++.+ ++.+.+--..-+..++.-++. .....+.+.++.++..+..+... .+.+..+..
T Consensus 39 ~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~---~~~~~~~~~ai~~L~~l~~~~~~-----~p~l~Rei~ 110 (165)
T PF08167_consen 39 AYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK---PDPPSVLEAAIITLTRLFDLIRG-----KPTLTREIA 110 (165)
T ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHhcC-----CCchHHHHh
Confidence 333444445566666666 444433222333333333333 44466778899999888866532 122222222
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHhccCCCchhHHHhhhHHHHHhcCHHHHHHHHHHH
Q 001029 1068 GINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSEL 1127 (1183)
Q Consensus 1068 ~~~~~~~~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~~~~~~f~~~~~~l 1127 (1183)
+ ..++.++..+++. .++ ......+-++|..++..+|..|..+..++
T Consensus 111 t----------p~l~~~i~~ll~l--~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki 156 (165)
T PF08167_consen 111 T----------PNLPKFIQSLLQL--LQD--SSCPETALDALATLLPHHPTTFRPFANKI 156 (165)
T ss_pred h----------ccHHHHHHHHHHH--Hhc--cccHHHHHHHHHHHHHHCCccccchHHHH
Confidence 1 2256666666663 221 23345667777788888887766655554
No 56
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=22.06 E-value=1.4e+02 Score=27.90 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHH
Q 001029 1017 AFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYH 1051 (1183)
Q Consensus 1017 ~f~~ll~sl~~Gl~~~d~~I~~~~l~~l~~L~~~~ 1051 (1183)
.+..++-.+.-||+|-.++|...++.+|+-|..++
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~ 42 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHA 42 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHC
Confidence 46778888999999999999999999999999887
No 57
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=20.56 E-value=1.3e+03 Score=26.22 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=47.0
Q ss_pred HHHHhhhcCC--CcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Q 001029 53 ATILGLCQSP--QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKI 130 (1183)
Q Consensus 53 ~~L~~f~~~~--~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l 130 (1183)
+.+..+...+ .+|.....+|+++ +.+++.-|+..|...+...=..-... ..++-+++++++.+.....+.-+..-.
T Consensus 93 ~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~~~~~~~~~-~~~~l~~ll~~L~~~l~~~~~~~~~~a 170 (312)
T PF03224_consen 93 ELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQGPKRSEKL-VKEALPKLLQWLSSQLSSSDSELQYIA 170 (312)
T ss_dssp HHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTSTTT--HHH-HHHHHHHHHHHHH-TT-HHHH---HHH
T ss_pred HHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHHHHHHhhcCCCcchHHHH
Confidence 3344454433 3788877766655 99999999999999887752221111 135558888888874322223344555
Q ss_pred HHHHHHHHH
Q 001029 131 SSVAAQLMK 139 (1183)
Q Consensus 131 ~~~~a~i~K 139 (1183)
+++++.+++
T Consensus 171 v~~L~~LL~ 179 (312)
T PF03224_consen 171 VQCLQNLLR 179 (312)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 666666664
No 58
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.29 E-value=5.5e+02 Score=31.07 Aligned_cols=97 Identities=14% Similarity=0.021 Sum_probs=52.8
Q ss_pred HHHHHHHHhhCCCCH---HHHHHHHHhhhcCCCcHHHHHHHH--hcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHH
Q 001029 34 SIEIACSSIQMHVNP---AAAEATILGLCQSPQPYKACQFIL--ENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLI 108 (1183)
Q Consensus 34 ~le~~~~~l~~~~~r---~~Ae~~L~~f~~~~~~~~~~~~iL--~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr 108 (1183)
-+|.|+......+|= -+...++..=...+- +.+++|- -+++++.++++|+++|+.+++++-..+-.+ ..=+
T Consensus 5 ~IdkAT~~~l~~pDWa~NleIcD~IN~~~~~~~--eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~--Va~k 80 (470)
T KOG1087|consen 5 LIDKATSESLAEPDWALNLEICDLINSTEGGPK--EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQ--VASK 80 (470)
T ss_pred HHHHhhcccccCccHHHHHHHHHHHhcCccCcH--HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHH--HHHH
Confidence 466777666555662 223333332222221 3333333 345667999999999999999985443222 1224
Q ss_pred HHHHHHHHhccCC-CchHHHHHHHHHH
Q 001029 109 GFCLCFVMQHASS-PEGYVQAKISSVA 134 (1183)
Q Consensus 109 ~~ll~~l~~~~~~-~~~~v~~~l~~~~ 134 (1183)
.||=+++..-... .+.-|++|++.++
T Consensus 81 ~fL~emVk~~k~~~~~~~Vr~kiL~LI 107 (470)
T KOG1087|consen 81 EFLNEMVKRPKNKPRDLKVREKILELI 107 (470)
T ss_pred HHHHHHHhccccCCcchhHHHHHHHHH
Confidence 4555544433222 4566777776543
Done!