Query 001030
Match_columns 1183
No_of_seqs 155 out of 496
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 07:23:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001030.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001030hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gjx_A Exportin-1; transport, 100.0 3.1E-64 1.1E-68 646.6 66.7 928 33-1180 28-1028(1073)
2 4hat_C Exportin-1; heat repeat 100.0 4.7E-60 1.6E-64 612.7 64.1 941 20-1179 10-1007(1023)
3 2x19_B Importin-13; nuclear tr 100.0 3.6E-43 1.2E-47 463.4 70.5 905 21-1180 16-955 (963)
4 3m1i_C Exportin-1; heat repeat 100.0 3.5E-42 1.2E-46 456.0 75.7 925 21-1179 11-1007(1049)
5 2x1g_F Cadmus; transport prote 100.0 6.5E-34 2.2E-38 375.1 69.6 919 33-1181 7-968 (971)
6 3ibv_A Exportin-T; karyopherin 100.0 2E-31 6.9E-36 345.3 75.0 921 21-1178 1-977 (980)
7 3a6p_A Exportin-5; exportin-5, 100.0 3E-25 1E-29 295.0 65.5 627 27-804 5-682 (1204)
8 1w9c_A CRM1 protein, exportin 99.9 2.6E-22 8.8E-27 219.9 15.7 284 854-1179 5-319 (321)
9 4fdd_A Transportin-1; heat rep 99.8 2.9E-15 1E-19 194.4 61.0 152 22-186 6-161 (852)
10 1wa5_C Importin alpha RE-expor 99.6 4.4E-10 1.5E-14 147.4 70.5 143 34-186 6-156 (960)
11 2bpt_A Importin beta-1 subunit 99.5 6.5E-10 2.2E-14 144.1 58.6 188 35-255 6-211 (861)
12 1qgr_A Protein (importin beta 99.3 1.6E-06 5.6E-11 112.3 63.8 183 37-255 5-204 (876)
13 1ibr_B P95, importin beta-1 su 99.0 7.2E-08 2.5E-12 115.0 27.8 184 35-255 3-204 (462)
14 4fdd_A Transportin-1; heat rep 90.2 48 0.0016 41.9 34.1 137 987-1149 641-784 (852)
15 1u6g_C TIP120 protein, CAND1; 89.4 7.8 0.00027 51.5 20.1 144 35-187 8-168 (1230)
16 2bpt_A Importin beta-1 subunit 71.4 2.1E+02 0.007 35.6 30.8 112 990-1127 613-724 (861)
17 3eiq_C Programmed cell death p 63.5 60 0.0021 36.2 13.1 109 31-144 216-329 (358)
18 1x5b_A Signal transducing adap 62.5 1.1E+02 0.0039 29.7 13.6 121 33-162 18-144 (163)
19 4ffb_C Protein STU2; tubulin f 57.3 1.9E+02 0.0066 30.4 16.9 107 74-187 65-173 (278)
20 2lqh_B Forkhead box O3, FOXO3A 59.1 2.7 9.2E-05 30.2 0.0 13 11-23 25-37 (52)
21 4fdd_B RNA-binding protein FUS 53.4 5.4 0.00019 26.1 1.3 15 11-25 2-16 (29)
22 2zu6_B Programmed cell death p 53.3 1E+02 0.0035 33.5 12.5 118 19-144 156-278 (307)
23 3g2s_A C-terminal fragment of 49.4 1.1E+02 0.0037 29.5 10.6 99 34-134 15-121 (149)
24 4db6_A Armadillo repeat protei 47.8 1.7E+02 0.0058 28.9 12.8 109 62-182 11-125 (210)
25 1mhq_A ADP-ribosylation factor 47.7 1.6E+02 0.0056 28.1 11.6 118 34-162 5-132 (148)
26 4hxt_A De novo protein OR329; 47.1 2.4E+02 0.0082 28.5 16.6 122 49-182 20-157 (252)
27 1juq_A ADP-ribosylation factor 46.1 43 0.0015 33.1 7.4 100 33-134 16-123 (171)
28 3ldz_A STAM-1, signal transduc 45.9 1.7E+02 0.006 27.5 11.4 95 33-134 8-109 (140)
29 2qk2_A LP04448P; mini spindles 39.9 2.5E+02 0.0085 28.7 12.9 132 988-1149 28-162 (242)
30 4db6_A Armadillo repeat protei 39.6 2.1E+02 0.0071 28.2 11.9 108 63-182 54-167 (210)
31 1wiz_A DNA-binding protein SAT 39.5 7 0.00024 34.8 0.3 41 54-109 51-92 (101)
32 1xqr_A HSPBP1 protein; armadil 38.8 1.4E+02 0.0046 32.3 10.7 124 48-183 57-197 (296)
33 4db8_A Armadillo-repeat protei 38.4 3.3E+02 0.011 27.6 13.7 112 63-181 54-166 (252)
34 1elk_A Target of MYB1; superhe 37.3 1.4E+02 0.0047 28.9 9.4 100 33-134 19-125 (157)
35 2v7q_J ATPase inhibitor; ION t 34.7 19 0.00064 29.2 2.0 25 33-60 23-47 (66)
36 3b2a_A TON_1937, putative unch 33.0 3.5E+02 0.012 28.2 11.6 109 19-144 104-223 (265)
37 2d5u_A N-glycanase 1; pngase, 32.1 53 0.0018 30.5 5.0 26 10-36 1-26 (124)
38 3mab_A Uncharacterized protein 28.2 64 0.0022 28.3 4.6 33 79-113 52-84 (93)
39 1gmj_A ATPase inhibitor; coile 28.1 38 0.0013 28.9 2.9 25 33-60 23-47 (84)
40 2qk1_A Protein STU2; STU2P, XM 28.1 4.2E+02 0.014 27.4 12.2 61 989-1051 30-92 (249)
41 1wa5_C Importin alpha RE-expor 27.5 1E+03 0.035 29.9 24.9 68 975-1049 458-525 (960)
42 2nsz_A Programmed cell death p 26.5 3.8E+02 0.013 24.7 10.6 109 31-144 6-119 (129)
43 1ug3_A EIF4GI, eukaryotic prot 25.5 5.4E+02 0.019 28.0 13.0 113 29-144 8-122 (339)
44 2qk2_A LP04448P; mini spindles 25.3 5.4E+02 0.018 26.0 14.7 107 67-186 60-166 (242)
45 3ul1_B Importin subunit alpha- 25.0 3.7E+02 0.012 31.2 12.2 99 35-139 59-172 (510)
46 3m1i_C Exportin-1; heat repeat 24.8 7.8E+02 0.027 31.4 16.4 143 989-1148 311-481 (1049)
47 2jdq_A Importin alpha-1 subuni 21.5 3.2E+02 0.011 30.5 10.6 138 35-183 22-180 (450)
48 4ffb_C Protein STU2; tubulin f 21.4 2.5E+02 0.0087 29.5 9.0 107 1020-1148 139-245 (278)
49 2ion_A PDCD4, programmed cell 21.4 5.1E+02 0.017 24.7 10.1 109 31-144 8-121 (152)
50 2qk1_A Protein STU2; STU2P, XM 21.1 6.4E+02 0.022 25.9 11.9 132 48-185 33-178 (249)
51 1qgr_A Protein (importin beta 21.1 1.2E+03 0.041 28.4 26.7 59 989-1051 622-681 (876)
No 1
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=3.1e-64 Score=646.62 Aligned_cols=928 Identities=13% Similarity=0.175 Sum_probs=667.9
Q ss_pred HHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHHH
Q 001030 33 HSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF 110 (1183)
Q Consensus 33 ~~le~~~~~l~~~~~--r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ 110 (1183)
+.||+++..+|.|.+ |++|+++|.+|+++|++|..|..||++|++++++|||+++|++.|.++|+.+|+++|.+||++
T Consensus 28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~ 107 (1073)
T 3gjx_A 28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKY 107 (1073)
T ss_dssp HHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 445666667788753 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCC-----CchHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhC
Q 001030 111 CLCFVMQHASS-----PEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFS 185 (1183)
Q Consensus 111 ll~~l~~~~~~-----~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~lv~E~s 185 (1183)
+++++.+...+ .++.+++|++++++.|+|++||+ .|++++.++.+.+.+ ++.++..+|.+|..+.+|..
T Consensus 108 Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~----~Wp~fi~dLv~~~~~--~~~~~~~~L~IL~~L~EEV~ 181 (1073)
T 3gjx_A 108 VVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK----HWPTFISDIVGASRT--SESLCQNNMVILKLLSEEVF 181 (1073)
T ss_dssp HHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh----hccHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHH
Confidence 99999875322 24677899999999999999998 599999999999864 67889999999999999965
Q ss_pred CCCcCCCCCcHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcccccccCCCCCc
Q 001030 186 PSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNWDFQFDTSGRK 265 (1183)
Q Consensus 186 ~~~ss~~~l~~~~h~k~~~~F~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw~f~~~~~~~~ 265 (1183)
..+++ .++..+..+.+..++.. ++.|++++..+|++. ....++..+|+++..+++|...+.
T Consensus 182 d~~~~--~l~~~r~~~lk~~L~~~-~~~Il~ll~~iL~~~-----------~~~~lv~~~L~~L~~~~sWI~i~~----- 242 (1073)
T 3gjx_A 182 DFSSG--QITQVKAKHLKDSMCNE-FSQIFQLCQFVMENS-----------QNAPLVHATLETLLRFLNWIPLGY----- 242 (1073)
T ss_dssp TSHHH--HBCHHHHHHHHHHHHHT-CHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHTTTSCTHH-----
T ss_pred hcccc--cccHHHHHHHHHHHHHH-HHHHHHHHHHHhccc-----------CCHHHHHHHHHHHHHHHHhcCHHH-----
Confidence 43211 23456667778888885 999999888877542 145688899999999999997654
Q ss_pred cccccccccccccccCCCccccccccCCcchHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhHHHHHHHHHHHHhc
Q 001030 266 ISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQLCSL 345 (1183)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~l~llf~~~~~~~~~~~~~~~~~~~~l~~~~l~cL~qLasl 345 (1183)
+.+++++++++..+ +. +++++..|.+||.++.+.
T Consensus 243 ----------------------------------i~~~~ll~~L~~~~--L~----------~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 243 ----------------------------------IFETKLISTLIYKF--LN----------VPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp ----------------------------------HHSSSHHHHHHHHT--SS----------SHHHHHHHHHHHHHHHHS
T ss_pred ----------------------------------hccchHHHHHHHHh--cC----------ChHHHHHHHHHHHHHHhc
Confidence 56677888774222 11 367999999999999987
Q ss_pred ccCcccCCChhhHHHHHHHHHHhhhhhcCChhhHHHHhhhCCCh--hhHHHHHHHHHHHHhhcChhhHHhhhhccCcchh
Q 001030 346 TGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSE--SEMLDGCRALLSIATVTTPFVFDRLLKSIRPFGT 423 (1183)
Q Consensus 346 ~~~~f~~~~~~~r~~~l~~~l~~~~~il~~~~~~~~~~~~g~~~--~~~~~~cr~l~~L~~~~~~~~l~~~~~~~~~~~~ 423 (1183)
+.+ + ....-...+..++..+..+++....+.+++..|.++ +-+..+||++..+...|. .++..... +
T Consensus 277 ~~~---~-~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~-----~lIe~~p~--~ 345 (1073)
T 3gjx_A 277 SVS---Q-YEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHG-----QLLEKRLN--L 345 (1073)
T ss_dssp CSG---G-GHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH-----HHHHHCGG--G
T ss_pred ccc---c-hHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHH-----HHHhcCcc--c
Confidence 422 1 111224456666776777888777788887777532 345568888877776653 22211101 0
Q ss_pred HHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhccc----ccCCCCC---------CChhhhhhHHHHHH-
Q 001030 424 LTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLD----STGRNVV---------LPLEVRNAAASLFA- 489 (1183)
Q Consensus 424 l~~l~~l~~~~~~~~~~~~~~~~~~~~es~~~lL~~W~~l~~~~~----~~~~~~~---------~~~~~~~~~~~I~~- 489 (1183)
...+.. ..+.+-. . +..++ .|.+++++++|..|...+- +..+..+ .+.. ...-..+|.
T Consensus 346 ~~~l~~-~l~~ll~--~-s~~~d---~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~-~~~y~~i~~~ 417 (1073)
T 3gjx_A 346 REALME-ALHYMLL--V-SEVEE---TEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPR-RQLYLTVLSK 417 (1073)
T ss_dssp HHHHHH-HHHHHHH--H-TTCSC---HHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHH-HHTTHHHHHH
T ss_pred hHHHHH-HHHHHHH--H-hCCCc---HHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhH-HHHHHHHHHH
Confidence 111110 0111111 1 22233 7999999999999987652 1000010 1111 111234443
Q ss_pred --HHHhcccccccccccCCCCccchh----h--ccHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhcccCCCC
Q 001030 490 --LIVESELKVASASAMDDNGEFNYL----Q--ASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMID 561 (1183)
Q Consensus 490 --~yi~srl~~~~~~~~~e~d~~e~~----~--~d~~~~~eqLe~i~~L~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~ 561 (1183)
..+.+||++|+++...|+|++|.. . ++...|+.+.+++.+++++++.++...+.+.+.+.. ++ .+
T Consensus 418 L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~------~~-~~ 490 (1073)
T 3gjx_A 418 VRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQV------NG-TE 490 (1073)
T ss_dssp HHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH------TS-CC
T ss_pred HHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh------cC-CC
Confidence 346799999987765444444421 2 244789999999999999999999999998888654 22 23
Q ss_pred cc-hhHHHHHHHHH-HHHhHhccCCCCCccCChhhhhhhhhhhhcccCchHHHHHHHHHHHHhhhcCcccccccCCHHHH
Q 001030 562 PT-ETLEELYSLLL-ITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLM 639 (1183)
Q Consensus 562 ~~-~~~E~L~Wli~-i~g~~l~d~~~ge~~~iP~~i~~~~~~~~~~~~~~vv~Li~~ll~l~~~~l~~~~~~~~~Sp~l~ 639 (1183)
|+ ..+|.++|.++ |+|++..+ .++..++.++..|+++++...+++++ +.++
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~----------------------~E~~~Lp~vi~~Ll~L~e~~~~kd~k-----~~va 543 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEE----------------------DEKRFLVTVIKDLLGLCEQKRGKDNK-----AIIA 543 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHH----------------------HHHHHHHHHHHHHHHHHHHSCSHHHH-----HHHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcc----------------------cccchHHHHHHHHhcccccccccchh-----HHHH
Confidence 43 57899999997 44554311 12233678999999999876655554 4588
Q ss_pred HHHHHHHHHHHHhhcCCcccccccCCCCCCCCCccccchhhHhHHHHhhcCCCCc--hhHHHHHHHHHHhhccCCCC---
Q 001030 640 EAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG--KPVLDIIVRISMTTLVSYPG--- 714 (1183)
Q Consensus 640 ~~~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~f~~~~~g--~~~l~~ll~~~~~~L~~~~~--- 714 (1183)
.+++|.+|||++ |+ ..+ ++++.++..++++++++.++| +++++.|.+.+..|..++..
T Consensus 544 s~i~~vlgrY~~-wl----~~h------------~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~ 606 (1073)
T 3gjx_A 544 SNIMYIVGQYPR-FL----RAH------------WKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQV 606 (1073)
T ss_dssp HHHHHHHHHCHH-HH----HHC------------HHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCT
T ss_pred HHHHHHHhhhHH-HH----HhC------------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999986 88 444 678889999999999988888 78999999999999876522
Q ss_pred --chhHHHHHHHHHHHHHhhccccchhhhcchhHHHHHHHhhcchhhhcccchhhHHHHHHHHHHHhcCCCcccchHHHH
Q 001030 715 --EKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVR 792 (1183)
Q Consensus 715 --e~~v~~~~~~~LL~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 792 (1183)
..+.+ ..+++.+.. ...+++++....||++++.+++..+++..+.++++
T Consensus 607 ~e~~p~i---------------------------~~il~~~~~--~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~ 657 (1073)
T 3gjx_A 607 GEVMPFI---------------------------DEILNNINT--IICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIE 657 (1073)
T ss_dssp TCSSCHH---------------------------HHHHTSHHH--HHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred cccchHH---------------------------HHHHHHHHH--HHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 22333 333332211 23347788888999999999988776666788999
Q ss_pred HHHHHHHHHHHHhhCCCcc-cccccchhHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHhh-HHHHHHHHHHhcCChHH
Q 001030 793 DLTRHATAYLVELSGKNDL-KNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSV-MNPVLLLLEVYKHESAV 870 (1183)
Q Consensus 793 ~~m~pl~~~~~~l~~~~~~-~~~~~~~~ii~~v~~ll~~l~Gi~~a~~~~~~~~l~~~l~~~-~~~~~~ll~~y~~~~~v 870 (1183)
.+|.|+.++|++++++... .+...|++.++.+..++|++..+|.+.+.. +.++ .+++++++++|..+++.
T Consensus 658 ~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~--------f~~~~~~i~~~~l~~y~~~s~~ 729 (1073)
T 3gjx_A 658 KYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHP--------FVIQLGRIYLDMLNVYKCLSEN 729 (1073)
T ss_dssp HHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGG--------GHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchh--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999965332 345677888889999999999999998875 3333 56778899999888776
Q ss_pred HHHHHHHHHHHhhcccccccc----chhhhHHHHHHHHHHHhhhcccC--------------cccccccccccccchhhh
Q 001030 871 VYLLLKFVVDWVDGQISYLEV----QETNIVIDFCTRLLQLYSSHNIG--------------KMLMTQSSCLLGEAKTEK 932 (1183)
Q Consensus 871 ~~~iL~~~~e~v~~~~~~l~~----~~~~~lf~~~~~ll~~y~~~~~~--------------~~~~~~~~~~~~~~~~e~ 932 (1183)
+. +.+...+..... ...+.+.+++++++++|...... .+..+|..+.+...+.+.
T Consensus 730 i~-------~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~ev 802 (1073)
T 3gjx_A 730 IS-------AAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEV 802 (1073)
T ss_dssp HH-------HHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHH
T ss_pred HH-------HHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHH
Confidence 54 445443433322 22577899999999999765421 113566666677778888
Q ss_pred hhhHHHHHHHHHHhhcCCCcccCCccccccccchhHHHHHhhhccccccccccccchhhhHHHHHHHHHHHhhChhhhhc
Q 001030 933 YKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQ 1012 (1183)
Q Consensus 933 ~k~l~~~l~lL~~~l~~~~~~f~~~~~~d~~~~~~~v~~~~l~~~iPli~~dll~yPkl~~~ff~Ll~~l~~~~~~~l~~ 1012 (1183)
+..+..+++-+.+.+.++. ..+.+ .-+++++.||++|+.+||+++..||+|++.+++.||..+.+
T Consensus 803 L~l~s~iv~k~~~~~~~~~------------~~il~---~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~ 867 (1073)
T 3gjx_A 803 LSTMAIIVNKLGGHITAEI------------PQIFD---AVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLA 867 (1073)
T ss_dssp HHHHHHHHHHHGGGTGGGH------------HHHHH---HHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTT
T ss_pred HHHHHHHHHHHHhhcchhH------------HHHHH---HHHHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHc
Confidence 8877777777766555332 23334 55599999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchh----------hhhc-cCCCCC-CCchhH
Q 001030 1013 LSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAA----------QAAG-INNSNG-NPEEGV 1080 (1183)
Q Consensus 1013 L~~~~f~~ll~sl~~Gl~~~d~~I~~~~l~~l~~L~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~-~~~~~l 1080 (1183)
+|++.|+.+++|+.||++|..++|+..+++++.++...+.++......++.. .|+| +.|+++ ..|..+
T Consensus 868 l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~~~~~i~~v~td~~h~~~f~~q~~i 947 (1073)
T 3gjx_A 868 IPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHASI 947 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTCTTCGGGHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhCchHhhhhhHHHHH
Confidence 9999999999999999999999999999999999887664321111111111 1244 556543 444555
Q ss_pred HHHHHHHHHHHHHhccCCCchhHHHhhhHHHHHhcCHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHhhcCCCCCCCcCh
Q 001030 1081 LSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQ-ANPPFKSRLANALQSLTSSNQLSSSLDR 1159 (1183)
Q Consensus 1081 l~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~~~~~~f~~~~~~li~~q-~~~~~~~~l~~~F~~L~~~~~~~~~l~~ 1159 (1183)
+.+++.++.+..+..+.... .+ -.|+++.++++.+++.+. |+ ..++++..+...|++. .
T Consensus 948 l~~l~~~~~~~~i~~~l~~~------~~-----~~n~~~~~~~~~~~l~~~fp~-~~~~qi~~fv~~l~~~--------~ 1007 (1073)
T 3gjx_A 948 LAYMFNLVEEGKISTPLNPG------NP-----VNNQMFIQDYVANLLKSAFPH-LQDAQVKLFVTGLFSL--------N 1007 (1073)
T ss_dssp HHHHHHHHTTTCCSCSSSCT------TT-----TCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHHS--------T
T ss_pred HHHHHHHHHcCCcccccccc------CC-----CccHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHh--------c
Confidence 55555554443222222110 00 047889999999988654 53 6788899999999874 4
Q ss_pred hhHHHHHHHHHHHHHHhhhcc
Q 001030 1160 VNYQRFRKNLTNFLIEVRGFL 1180 (1183)
Q Consensus 1160 ~nr~~F~~~l~~F~~~vr~~L 1180 (1183)
++..+|+.++++|++++|+|=
T Consensus 1008 ~d~~~f~~~lrDFli~~ke~~ 1028 (1073)
T 3gjx_A 1008 QDIPAFKEHLRDFLVQIKEFA 1028 (1073)
T ss_dssp TCHHHHHHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHc
Confidence 688999999999999999873
No 2
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=4.7e-60 Score=612.74 Aligned_cols=941 Identities=12% Similarity=0.136 Sum_probs=651.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccC
Q 001030 20 GGPADLAKLQSIMHSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWS 97 (1183)
Q Consensus 20 ~~~~d~~~l~~~~~~le~~~~~l~~~~~--r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~ 97 (1183)
.+++|++.|+.+++ .+|+|++ |++|+++|.+|+++|++|..|..||+.+++++++|||+++|++.|.++|+
T Consensus 10 ~~~~dv~~Le~av~-------~ly~p~~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~ 82 (1023)
T 4hat_C 10 SNDLDIALLDQVVS-------TFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWK 82 (1023)
T ss_dssp TSCCCHHHHHHHHH-------HHHHCCHHHHHHHHHHHHHHHHCTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHH-------HHhCCChHHHHHHHHHHHHHHcCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 36788766655554 4466654 79999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhccCCC-----chHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccCCChhhHHH
Q 001030 98 FLTADEKKSLIGFCLCFVMQHASSP-----EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFI 172 (1183)
Q Consensus 98 ~l~~~~k~~lr~~ll~~l~~~~~~~-----~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (1183)
.+|+++|..||+++++++.+.+.+. ++++++|++++++.|+|++||+ .|++++.++.+.+.+ ++.++..
T Consensus 83 ~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~----~Wp~~l~dL~~~l~~--~~~~~~~ 156 (1023)
T 4hat_C 83 LLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ----NWPEFIPELIGSSSS--SVNVCEN 156 (1023)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHTTT--CHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChh----hchHHHHHHHHHhcC--CHHHHHH
Confidence 9999999999999999998864222 5899999999999999999998 699999999999874 6778999
Q ss_pred HHHHHHHHHhhhCCCCcCCCCCcHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHH
Q 001030 173 GINFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQI 252 (1183)
Q Consensus 173 ~l~lL~~lv~E~s~~~ss~~~l~~~~h~k~~~~F~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~ 252 (1183)
++.+|..+.+|..... ...++..+++..+..++.. ++.||+++..+|... ....+++.+|+++..+
T Consensus 157 ~L~iL~~L~EEV~~~~--~~~l~~~r~~~lk~~l~~~-~~~I~~ll~~iL~~~-----------~~~~l~~~~L~~l~s~ 222 (1023)
T 4hat_C 157 NMIVLKLLSEEVFDFS--AEQMTQAKALHLKNSMSKE-FEQIFKLCFQVLEQG-----------ASSSLIVATLESLLRY 222 (1023)
T ss_dssp HHHHHHHHHHHHHTSC--TTTSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC-----------SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh--hccchHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC-----------CCHHHHHHHHHHHHHH
Confidence 9999999999954321 1145667778888888886 899999998888652 1346788999999999
Q ss_pred cccccccCCCCCccccccccccccccccCCCccccccccCCcchHHHhhccchHHHHH-HHHHHhhhcccCCCCCCCchh
Q 001030 253 LNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLL-NLYSALRQKFSSEGYWLDCPI 331 (1183)
Q Consensus 253 Lsw~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~l~llf-~~~~~~~~~~~~~~~~~~~~l 331 (1183)
++|.+.+. +.++++++++| .+.. ++++
T Consensus 223 l~WI~i~~---------------------------------------i~~~~ll~~l~~~~L~-------------~~~~ 250 (1023)
T 4hat_C 223 LHWIPYRY---------------------------------------IYETNILELLSTKFMT-------------SPDT 250 (1023)
T ss_dssp TTTSCTHH---------------------------------------HHSSSHHHHHHTHHHH-------------SHHH
T ss_pred HHhCCHHH---------------------------------------hcchhHHHHHHHHHcC-------------CHHH
Confidence 99987655 55677999988 4432 3679
Q ss_pred HHHHHHHHHHHHhcccCcccCC--ChhhHHHHHHHHHHhh-hhhcCChhhHHHHhhhCCC-h-hhHHHHHHHHHHHHhhc
Q 001030 332 AVSARKLIVQLCSLTGTVFPSD--NGKMQEHHLLQLLSGI-LEWVDPPDVVAQAIESGKS-E-SEMLDGCRALLSIATVT 406 (1183)
Q Consensus 332 ~~~~l~cL~qLasl~~~~f~~~--~~~~r~~~l~~~l~~~-~~il~~~~~~~~~~~~g~~-~-~~~~~~cr~l~~L~~~~ 406 (1183)
+..|.+||.++.+.+-+ ++. .+..-...+..++..+ ..+++....+.+++..|.+ + +.+..+|+++..+...|
T Consensus 251 r~~A~ecL~eIv~~~~~--~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~ 328 (1023)
T 4hat_C 251 RAITLKCLTEVSNLKIP--QDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARN 328 (1023)
T ss_dssp HHHHHHHHHHHHTSCCC--SSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccC--CchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999985421 111 1111122333444444 4456655566666666642 2 44556888888887765
Q ss_pred ChhhHHhhhhccCcchhHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHH
Q 001030 407 TPFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAAS 486 (1183)
Q Consensus 407 ~~~~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~es~~~lL~~W~~l~~~~~~~~~~~~~~~~~~~~~~~ 486 (1183)
. .++... ..+...+.. ....+-.. +..++ .+.+.++++||..+.+++-. +.........+..+
T Consensus 329 ~-----~li~~~--~~~~~~l~~-~l~~Ll~~---~~~~d---~ei~~~tl~FW~~L~~~l~~---e~~~~~~~~~~~~~ 391 (1023)
T 4hat_C 329 R-----ALLESD--ESLRELLLN-AHQYLIQL---SKIEE---RELFKTTLDYWHNLVADLFY---EPLKKHIYEEICSQ 391 (1023)
T ss_dssp G-----GGGTSC--GGGHHHHHH-HHHHHHHH---TTSSC---HHHHHHHHHHHHHHHHHHTT---STTTGGGGHHHHHH
T ss_pred H-----HHHhCC--cchhHHHHH-HHHHHHHh---hCCCc---HHHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHH
Confidence 4 222221 011111111 11111111 22333 79999999999999986521 10011111111222
Q ss_pred HHHHHHhcccccccccccCCCCccch------hhccHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhcccCCC
Q 001030 487 LFALIVESELKVASASAMDDNGEFNY------LQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMI 560 (1183)
Q Consensus 487 I~~~yi~srl~~~~~~~~~e~d~~e~------~~~d~~~~~eqLe~i~~L~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~ 560 (1183)
+.. .+..||++|+++...|+|++|- ..|+.+.|+..++++.+++++.+.++.+.+.+.+.+... ....
T Consensus 392 L~~-vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~-----~~~~ 465 (1023)
T 4hat_C 392 LRL-VIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQID-----GSEW 465 (1023)
T ss_dssp HHH-HHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHS-----STTC
T ss_pred HHH-HHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhc-----CCCC
Confidence 222 3566899998653222332221 135668899999999999999999999999998876541 1112
Q ss_pred CcchhHHHHHHHHHHHHhHhccCCCCCccCChhhhhhhhhhhhcccCch-HHHHHHHHHHHHhhhcCcccccccCCHHHH
Q 001030 561 DPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHP-VVLLCGSIIKFAEWSLDPEARASVFSPRLM 639 (1183)
Q Consensus 561 ~~~~~~E~L~Wli~i~g~~l~d~~~ge~~~iP~~i~~~~~~~~~~~~~~-vv~Li~~ll~l~~~~l~~~~~~~~~Sp~l~ 639 (1183)
+| ...|-.+|+++ ++.+.-. +...++ +..++..++++++...+++ -.+++.
T Consensus 466 ~W-~~~EA~~~a~g---aIa~~~~-------------------~~~e~~~l~~vi~~Ll~l~~~~~~~d-----~k~~v~ 517 (1023)
T 4hat_C 466 SW-HNINTLSWAIG---SISGTMS-------------------EDTEKRFVVTVIKDLLDLCVKKRGKD-----NKAVVA 517 (1023)
T ss_dssp CH-HHHHHHHHHHH---HTTTSSC-------------------HHHHHHHHHHHHHHHHHHHHHCCSHH-----HHHHHH
T ss_pred CH-HHHHHHHHHHH---HHHcCCC-------------------chhHHHHHHHHHHHHHHhhhccccCc-----chHHHH
Confidence 34 35667777775 5532111 011123 5577778888876533222 246788
Q ss_pred HHHHHHHHHHHHhhcCCcccccccCCCCCCCCCccccchhhHhHHHHhhcCCCCc--hhHHHHHHHHHHhhccCCCCchh
Q 001030 640 EAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQG--KPVLDIIVRISMTTLVSYPGEKD 717 (1183)
Q Consensus 640 ~~~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~f~~~~~g--~~~l~~ll~~~~~~L~~~~~e~~ 717 (1183)
.+++|.+|||++ |+ ..+ ++++.++.+.+++.+++++++ .++++.|.+.+..|-.....
T Consensus 518 ~t~~~~lGry~~-wl----~~~------------~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~--- 577 (1023)
T 4hat_C 518 SDIMYVVGQYPR-FL----KAH------------WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVI--- 577 (1023)
T ss_dssp HHHHHHHHTCHH-HH----HHC------------HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHS---
T ss_pred HHHHHHHHHHHH-HH----hcc------------HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhc---
Confidence 999999999986 88 333 466778899999999876665 57777777766666432200
Q ss_pred HHHHHHHHHHHHHhhccccchhhhcchhHHHHHHHhhcchhhhcccchhhHHHHHHHHHHHhcCCCcccchHHHHHHHHH
Q 001030 718 LQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRH 797 (1183)
Q Consensus 718 v~~~~~~~LL~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~m~p 797 (1183)
..... ..|.+..+++.+.. ...+++++.+..+|++++.++.+.++...+.++++.+|.|
T Consensus 578 -------------~~~~e------~~p~~~~il~~l~~--~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~ 636 (1023)
T 4hat_C 578 -------------QQPRE------SEPFIQTIIRDIQK--TTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQL 636 (1023)
T ss_dssp -------------CCTTC------SSCHHHHHHHTHHH--HHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHH
T ss_pred -------------cCCCC------CchhHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHh
Confidence 00000 02444445444321 1124677778899999999998877767788899999999
Q ss_pred HHHHHHHhhCCCcc-cccccchhHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHhh-HHHHHHHHHHhcCChHHHHHHH
Q 001030 798 ATAYLVELSGKNDL-KNVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSV-MNPVLLLLEVYKHESAVVYLLL 875 (1183)
Q Consensus 798 l~~~~~~l~~~~~~-~~~~~~~~ii~~v~~ll~~l~Gi~~a~~~~~~~~l~~~l~~~-~~~~~~ll~~y~~~~~v~~~iL 875 (1183)
+...|+++.++... ..+..+++.++.+..+|+++..+|.+.+.. +.|+ -+++..++++|..++..+.
T Consensus 637 ~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~--------f~~~~~~i~~~~l~~y~~~s~~i~--- 705 (1023)
T 4hat_C 637 PNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGAD--------FYPQLGHIYYNMLQLYRAVSSMIS--- 705 (1023)
T ss_dssp HHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGG--------GHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHH--------HHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 99999999864321 234566777889999999999999998865 3333 5678888899998888764
Q ss_pred HHHHHHhhcccccccc----chhhhHHHHHHHHHHHhhhcccCc--------------ccccccccccccchhhhhhhHH
Q 001030 876 KFVVDWVDGQISYLEV----QETNIVIDFCTRLLQLYSSHNIGK--------------MLMTQSSCLLGEAKTEKYKDLR 937 (1183)
Q Consensus 876 ~~~~e~v~~~~~~l~~----~~~~~lf~~~~~ll~~y~~~~~~~--------------~~~~~~~~~~~~~~~e~~k~l~ 937 (1183)
+.+.+.+..... ...+.+.+++++++++|.....+. ...+|..+.+...+.+.+..+.
T Consensus 706 ----~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s 781 (1023)
T 4hat_C 706 ----AQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMT 781 (1023)
T ss_dssp ----HHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHH
T ss_pred ----HHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHH
Confidence 555555554433 124678999999999998654321 1245555555556666666555
Q ss_pred HHHHHHHHhhcCCCcccCCccccccccchhHHHHHhhhccccccccccccchhhhHHHHHHHHHHHhhChhhhhcCCHHH
Q 001030 938 ALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEA 1017 (1183)
Q Consensus 938 ~~l~lL~~~l~~~~~~f~~~~~~d~~~~~~~v~~~~l~~~iPli~~dll~yPkl~~~ff~Ll~~l~~~~~~~l~~L~~~~ 1017 (1183)
.+++-+...+.++ ...+.-.-++++++||++|+.+||+++..||+|++.+++.||..+.++|++.
T Consensus 782 ~iv~~~~~~~~~~---------------~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~ 846 (1023)
T 4hat_C 782 TVVEKVGHMIPQG---------------VILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAA 846 (1023)
T ss_dssp HHHHHHGGGCHHH---------------HHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHH
T ss_pred HHHHHHHHhhhhh---------------hHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHH
Confidence 5555543321111 1223335569999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhc--CCCccchh----------hhhc-cCCCCC-CCchhHHHH
Q 001030 1018 FAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETG--AGKVGLAA----------QAAG-INNSNG-NPEEGVLSR 1083 (1183)
Q Consensus 1018 f~~ll~sl~~Gl~~~d~~I~~~~l~~l~~L~~~~~~~~~--~~~~~~~~----------~~~~-~~~~~~-~~~~~ll~~ 1083 (1183)
|+.+++|+.||++|.+++|+..+++++.+|...+.+... ....++.. .|+| +.|+++ ..|..++.+
T Consensus 847 ~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~td~~h~~~f~~~~~~l~~ 926 (1023)
T 4hat_C 847 FKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMK 926 (1023)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999887764311 11111111 1344 666653 445566666
Q ss_pred HHHHHHHHHHhccCCCchhHHHhhhHHHHHhcCHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHhhcCCCCCCCcChhhH
Q 001030 1084 FLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQ-ANPPFKSRLANALQSLTSSNQLSSSLDRVNY 1162 (1183)
Q Consensus 1084 ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~~~~~~f~~~~~~li~~q-~~~~~~~~l~~~F~~L~~~~~~~~~l~~~nr 1162 (1183)
++.++.+..+..+... ....|- ...|++++++|+.+++++. |+ ..++++..+...|++. .++.
T Consensus 927 l~~~~~~~~~~~~~~~----~~~~~~---~~~n~~~~~~~~~~~l~~~fp~-~~~~qi~~fv~~l~~~--------~~~~ 990 (1023)
T 4hat_C 927 LISLVYDNKISVPLYQ----EAEVPQ---GTSNQVYLSQYLANMLSNAFPH-LTSEQIASFLSALTKQ--------CKDL 990 (1023)
T ss_dssp HHHHHHTTCCCSCSSC----TTSSCT---TCCHHHHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHHT--------TTCH
T ss_pred HHHHHHcCCcccccCC----ccccCC---CCchHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHc--------cCCH
Confidence 6666655433222211 000000 1257889999999988865 53 5688899999999874 4689
Q ss_pred HHHHHHHHHHHHHhhhc
Q 001030 1163 QRFRKNLTNFLIEVRGF 1179 (1183)
Q Consensus 1163 ~~F~~~l~~F~~~vr~~ 1179 (1183)
.+|+.++++|++++|+|
T Consensus 991 ~~f~~~lrdfli~~ke~ 1007 (1023)
T 4hat_C 991 VVFKGTLRDFLVQIKEV 1007 (1023)
T ss_dssp HHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhHHhHhh
Confidence 99999999999999986
No 3
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=3.6e-43 Score=463.45 Aligned_cols=905 Identities=15% Similarity=0.115 Sum_probs=565.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccC
Q 001030 21 GPADLAKLQSIMHSIEIACSSIQMHVN---PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWS 97 (1183)
Q Consensus 21 ~~~d~~~l~~~~~~le~~~~~l~~~~~---r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~ 97 (1183)
-.||...+ ++++++++.+|.++| |++|+++|.+|+++|++|..|..||+.+.+++++|+|+.+|++.|.++|+
T Consensus 16 ~~m~~~~~----~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~ 91 (963)
T 2x19_B 16 APALDFTV----ENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWS 91 (963)
T ss_dssp --CCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred ccCCHhhH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHH
Confidence 34664344 456666666566555 79999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccC----CChhhHHHH
Q 001030 98 FLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGI----HGVDTQFIG 173 (1183)
Q Consensus 98 ~l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 173 (1183)
.+|+++|..||+++++++.+.. +.+++|++|++.+++.|+|++|++ .|++++.++.+.+.+. .++.++..+
T Consensus 92 ~l~~~~~~~ir~~ll~~l~~~~-~~~~~ir~kl~~~la~i~~~~~p~----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~ 166 (963)
T 2x19_B 92 DIPTDQYESLKAQLFTQITRFA-SGSKIVLTRLCVALASLALSMMPD----AWPCAVADMVRLFQAEDSPVDGQGRCLAL 166 (963)
T ss_dssp GSCGGGHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHTTT----TSTTHHHHHHHHHCC------CHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCcc----ccchHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 9999999999999999998864 457999999999999999999987 5899999999988631 145688999
Q ss_pred HHHHHHHHhhhCCCCcCCCCCcHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHc
Q 001030 174 INFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQIL 253 (1183)
Q Consensus 174 l~lL~~lv~E~s~~~ss~~~l~~~~h~k~~~~F~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~L 253 (1183)
+.+|..+.+|....+ . +.+++...+..++. .++.|+.++..++.... ....+...+|+++.
T Consensus 167 l~iL~~l~ee~~~~~---~--~~~~r~~~~~~l~~-~~~~i~~ll~~~l~~~~----------~~~~~~~~~l~~l~--- 227 (963)
T 2x19_B 167 LELLTVLPEEFQTSR---L--PQYRKGLVRTSLAV-ECGAVFPLLEQLLQQPS----------SPSCVRQKVLKCFS--- 227 (963)
T ss_dssp HHHHHHHHHHHTTCC---C-----------CCSGG-GHHHHHHHHHHHHSCTT----------CCHHHHHHHHHHHH---
T ss_pred HHHHHhCHHHHhccc---C--cHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCC----------CchHHHHHHHHHHH---
Confidence 999999999986552 1 33333444445555 47888887666653211 11247777887774
Q ss_pred ccccccCCCCCccccccccccccccccCCCccccccccCCcchHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhHH
Q 001030 254 NWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAV 333 (1183)
Q Consensus 254 sw~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~l~llf~~~~~~~~~~~~~~~~~~~~l~~ 333 (1183)
+|...+... ...+.+++.+|+.+. +++++.
T Consensus 228 ~wi~~~~~~-------------------------------------~~~~~ll~~l~~~l~-------------~~~~~~ 257 (963)
T 2x19_B 228 SWVQLEVPL-------------------------------------QDCEALIQAAFAALQ-------------DSELFD 257 (963)
T ss_dssp HHHTSSCCG-------------------------------------GGTHHHHHHHHHHTT-------------STTTHH
T ss_pred HHHcCCCCc-------------------------------------ccchHHHHHHHHHhC-------------CchHHH
Confidence 687644321 112556777775541 267899
Q ss_pred HHHHHHHHHHhcccCcccCCChhhHHHHHHHHHHhhhhhcCChhhHHHHhhhCCChhhHHHHHHHHHHHHhhcChhhHHh
Q 001030 334 SARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATVTTPFVFDR 413 (1183)
Q Consensus 334 ~~l~cL~qLasl~~~~f~~~~~~~r~~~l~~~l~~~~~il~~~~~~~~~~~~g~~~~~~~~~cr~l~~L~~~~~~~~l~~ 413 (1183)
.+++|+.++.+.+.+ . .+..++..++.++...++ .+..+...+ +.+.+..+|+++.++...++ .
T Consensus 258 ~a~~~l~~i~~~~~~-----~--~~~~~~~~l~~~~~~~~~---~~~~~~~~~-d~~~~~~~~~l~~~~~~~~~-----~ 321 (963)
T 2x19_B 258 SSVEAIVNAISQPDA-----Q--RYVNTLLKLIPLVLGLQE---QLRQAVQNG-DMETSHGICRIAVALGENHS-----R 321 (963)
T ss_dssp HHHHHHHHHHTCTTG-----G--GCHHHHHHHHHHHHTTHH---HHHHHHHTT-CHHHHHHHHHHHHHHHHHHH-----H
T ss_pred HHHHHHHHHHccccc-----c--cCHHHHHHHHHHHHhhHH---HHHHHHHCC-CHHHHHHHHHHHHHHHHHhH-----H
Confidence 999999999874421 1 123466666665554421 122222222 45778889999999887653 1
Q ss_pred hhhccCcchhHHHHHHHHHHHHHHHhhcc---cccccchHHHHHHHHHHHHHhhhcccccCCC--CCCChhhhhhHHHHH
Q 001030 414 LLKSIRPFGTLTLLSNLMCEVVKVLMMNN---TEEGTWSWEARDILLDTWTTLLVSLDSTGRN--VVLPLEVRNAAASLF 488 (1183)
Q Consensus 414 ~~~~~~~~~~l~~l~~l~~~~~~~~~~~~---~~~~~~~~es~~~lL~~W~~l~~~~~~~~~~--~~~~~~~~~~~~~I~ 488 (1183)
.+..... .-..+..+...++. .+... ..+ .+....++++|..+++.......+ ........++..++.
T Consensus 322 ~l~~~~~--~~~~~~~~l~~ll~-~~~~~~~~~~~----~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 394 (963)
T 2x19_B 322 ALLDQVE--HWQSFLALVNMIMF-CTGIPGHYPVN----ETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLV 394 (963)
T ss_dssp HHHHCGG--GHHHHHHHHHHHHH-HHTCSSCTTTT----CGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcc--chHHHHHHHHHHHH-HHcCCCCCCch----hhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 1110000 00111111111111 11110 122 244678899999998854321100 000011112233443
Q ss_pred HHHHhcccccccccccCCCCccchhhccH-HHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhcccCCCCcchhHH
Q 001030 489 ALIVESELKVASASAMDDNGEFNYLQASI-SAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLE 567 (1183)
Q Consensus 489 ~~yi~srl~~~~~~~~~e~d~~e~~~~d~-~~~~eqLe~i~~L~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~~~~~~E 567 (1183)
...+ .+|..|++...++.| ++++++. ...++..+++..+++..+.++.+.+.+.+.+..+++ ..+.+| .
T Consensus 395 ~~ll-~~~~~p~~~~~~~~~--~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~---~~~~~w----~ 464 (963)
T 2x19_B 395 DVLL-HKAQFPSDEEYGFWS--SDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSS---EEPYSW----Q 464 (963)
T ss_dssp HHHH-HHHSCCCHHHHHTSC--HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTC---CCSCCH----H
T ss_pred HHHH-HHHcCCCcccccCCC--hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhc---CCCCch----H
Confidence 3333 355544332111111 1111222 233566678888888888889998888888766543 122233 3
Q ss_pred HHHHHHHHHHhHhccCCCCCccCChhhhhhhhhhhhcccCchHHHHHHHHHHHHhhhcCcccccccCCHHHHHHHHHHHH
Q 001030 568 ELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLA 647 (1183)
Q Consensus 568 ~L~Wli~i~g~~l~d~~~ge~~~iP~~i~~~~~~~~~~~~~~vv~Li~~ll~l~~~~l~~~~~~~~~Sp~l~~~~l~fl~ 647 (1183)
...-+++..|++..+-.+.+ ...+..++..+.+++ . -+|.+..+.+|+++
T Consensus 465 ~~eaal~al~~i~~~~~~~~-------------------~~~l~~l~~~l~~l~-----~------~~~~vr~~~~~~l~ 514 (963)
T 2x19_B 465 HTEALLYGFQSIAETIDVNY-------------------SDVVPGLIGLIPRIS-----I------SNVQLADTVMFTIG 514 (963)
T ss_dssp HHHHHHHHHHHHTTSCCSSC-------------------CSHHHHHHHHGGGSC-----C------CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCchh-------------------hHHHHHHHHHHHhCC-----C------CcHHHHHHHHHHHH
Confidence 33444555556532211111 111223333222221 1 15789999999999
Q ss_pred HHHHhhcCCcccccccCCCCCCCCCccccchhhHhHHHHhhcCCCCchhHHHHHHHHHHhhccCCCCchhHHHHHHHHHH
Q 001030 648 RWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLL 727 (1183)
Q Consensus 648 ~~~~~YL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~f~~~~~g~~~l~~ll~~~~~~L~~~~~e~~v~~~~~~~LL 727 (1183)
||+. |+.. + ++.+..+.+.+... +.. ++|...++ ..|
T Consensus 515 ~~~~-~l~~----~------------~~~l~~vl~~l~~~---------------------l~~----~~V~~~A~-~al 551 (963)
T 2x19_B 515 ALSE-WLAD----H------------PVMINSVLPLVLHA---------------------LGN----PELSVSSV-STL 551 (963)
T ss_dssp HTHH-HHHH----C------------HHHHTTTHHHHHHH---------------------TTC----GGGHHHHH-HHH
T ss_pred HHHH-HHHh----C------------HHHHHHHHHHHHHH---------------------hCC----chHHHHHH-HHH
Confidence 9985 6631 1 11222333333333 322 44555566 566
Q ss_pred HHHhhccccchhhhcchhHHHHHHHhhcchhhhcccchhhHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHhhC
Q 001030 728 HALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSG 807 (1183)
Q Consensus 728 ~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~m~pl~~~~~~l~~ 807 (1183)
..+++... ..+ .|.+..+++....-..-..++.+.+..+|++++.++.+.. ++....|+..+|.|+...|.++.+
T Consensus 552 ~~l~~~~~--~~l--~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~-~~~~~~~~~~l~~~l~~~l~~~~~ 626 (963)
T 2x19_B 552 KKICRECK--YDL--PPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ-VEEILKNLHSLISPYIQQLEKLAE 626 (963)
T ss_dssp HHHHHHTG--GGC--TTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHH--HHH--HhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66664321 112 2666666654321000002455667789999999987554 567788999999999999999875
Q ss_pred CCcccccccchhHHHHHHHHHHHhhhhhhccCCC------------------cHHHHHHHHHhhHHHHHHHHHHhcCChH
Q 001030 808 KNDLKNVSQQPDIILLVSCLLERLRGAANATEPR------------------TQKAIYEMGFSVMNPVLLLLEVYKHESA 869 (1183)
Q Consensus 808 ~~~~~~~~~~~~ii~~v~~ll~~l~Gi~~a~~~~------------------~~~~l~~~l~~~~~~~~~ll~~y~~~~~ 869 (1183)
.+. +++.+..+...++++.+++++.... +...+..++...++++..+++.|.++++
T Consensus 627 ~~~------~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 700 (963)
T 2x19_B 627 EIP------NPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQ 700 (963)
T ss_dssp SCS------CHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCC------CHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchH
Confidence 431 4555666778888888888887632 1123556666678999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccccchhhhHHHHHHHHHHHhhhcccCcccccccccccccchhhhhhhHHHHHHHHHHhhcC
Q 001030 870 VVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSK 949 (1183)
Q Consensus 870 v~~~iL~~~~e~v~~~~~~l~~~~~~~lf~~~~~ll~~y~~~~~~~~~~~~~~~~~~~~~~e~~k~l~~~l~lL~~~l~~ 949 (1183)
+.+.+++++...+...+....+ .+-..+-.++..|...+ ...++.+++.++.
T Consensus 701 v~e~~~~~l~~~~~~~~~~~~~----~l~~~~~~l~~~~~~~~-----------------------~~~~l~l~~~li~- 752 (963)
T 2x19_B 701 VVEAVCAIFEKSVKTLLDDFAP----MVPQLCEMLGRMYSTIP-----------------------QASALDLTRQLVH- 752 (963)
T ss_dssp HHHHHHHHHHHHHHHSSSTTGG----GHHHHHHHHHHHHHHSC-----------------------CHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhhcccccc----cHHHHHHHHHHHHHcCC-----------------------ccHHHHHHHHHHH-
Confidence 9999999999988654433211 12222334455564311 0123344444433
Q ss_pred CCcccCC-ccccccccchhHHHHHhhhccccccccccccchhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhh
Q 001030 950 DLVDFSS-DSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFG 1028 (1183)
Q Consensus 950 ~~~~f~~-~~~~d~~~~~~~v~~~~l~~~iPli~~dll~yPkl~~~ff~Ll~~l~~~~~~~l~~L~~~~f~~ll~sl~~G 1028 (1183)
.||. +.+.+. + ...+-..+.++++++++++.++|++++.||.|+..+++.||..+.. ++..|..+++++.+|
T Consensus 753 ---~f~~~~~~~~~-~--~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~-~~~~~~~i~~~~~~~ 825 (963)
T 2x19_B 753 ---IFAHEPAHFPP-I--EALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC-ERLDVKAVFQCAVLA 825 (963)
T ss_dssp ---HHTTCTTTCHH-H--HHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC-TTSCHHHHHHHHHHH
T ss_pred ---HhCCCcchHHH-H--HHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC-CcccHHHHHHHHHHH
Confidence 1222 111111 1 1122234567778888888899999999999999999999999864 433499999999999
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhccCCCchhHHHhhh
Q 001030 1029 LHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADA 1108 (1183)
Q Consensus 1029 l~~~d~~I~~~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~ 1108 (1183)
+++.++++++.|++++..+++++. +..+.. +++ ......++..++..+..+..... ++.++..
T Consensus 826 l~~~~~~~~~~~l~~l~~l~~~~~-----~~~~~~-~~~----------~~~~~~l~~~l~~~l~~~~~~~~-~~~~~~i 888 (963)
T 2x19_B 826 LKFPEAPTVKASCGFFTELLPRCG-----EVESVG-KVV----------QEDGRMLLIAVLEAIGGQASRSL-MDCFADI 888 (963)
T ss_dssp TTCSCHHHHHHHHHHHHHHGGGTT-----SSCHHH-HHT----------TTSHHHHHHHHHHHHTTTSCGGG-HHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCC-----ChHHHH-HHH----------HHHHHHHHHHHHHHhcccCChhH-HHHHHHH
Confidence 999999999999999999987643 111111 111 13467788888888665555544 4788999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHcC--CCchhH-HHHHHHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHhhhcc
Q 001030 1109 LFPLILCEPRLYQRLGSELIERQ--ANPPFK-SRLANALQSLTSSNQLSSSLDRVNYQRFRKNLTNFLIEVRGFL 1180 (1183)
Q Consensus 1109 l~~Li~~~~~~f~~~~~~li~~q--~~~~~~-~~l~~~F~~L~~~~~~~~~l~~~nr~~F~~~l~~F~~~vr~~L 1180 (1183)
++.|+..+++.+.+|+.+++..+ |..... ++..++..+|+. .+.++++|++++++|...+||+-
T Consensus 889 l~~l~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~--------~~~~~~~f~~~l~~F~~~~r~~~ 955 (963)
T 2x19_B 889 LFALNKHCFSLLSMWIKEALQPPGFPSARLSPEQKDTFSQQILR--------ERVNKRRVKEMVKEFTLLCRGLH 955 (963)
T ss_dssp HHHHHHHSHHHHHHHHHHHTCSTTSSCTTCCHHHHHHHHHHHTC--------SSCCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHChHHHHHHHHHHhcccCCCCCcCCHHHHHHHHHHHHH--------HHcCcHHHHHHHHHHHHHHcCcc
Confidence 99999999999999999998532 211223 333333455653 24589999999999999999974
No 4
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=3.5e-42 Score=456.05 Aligned_cols=925 Identities=14% Similarity=0.174 Sum_probs=565.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCc
Q 001030 21 GPADLAKLQSIMHSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSF 98 (1183)
Q Consensus 21 ~~~d~~~l~~~~~~le~~~~~l~~~~~--r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~ 98 (1183)
.++|++++ +++++.+|+|.+ |++||++|.+|+++|++|..|..||+++++++++|+|+.+|++.|.++|..
T Consensus 11 ~~~~~~~l-------~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~ 83 (1049)
T 3m1i_C 11 NDLDIALL-------DQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKL 83 (1049)
T ss_dssp SCCCHHHH-------HHHHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGG
T ss_pred CcccHHHH-------HHHHHHHhCCChHHHHHHHHHHHHHHhCchHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCcc
Confidence 46665555 455555567653 799999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCC-----chHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccCCChhhHHHH
Q 001030 99 LTADEKKSLIGFCLCFVMQHASSP-----EGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIG 173 (1183)
Q Consensus 99 l~~~~k~~lr~~ll~~l~~~~~~~-----~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1183)
+|+++|..||+++++++.+...+. +++|++|++.+++.|+|++||+ .|++++.++.+.+. .++.++..+
T Consensus 84 l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~----~Wp~ll~~L~~~~~--~~~~~~~~~ 157 (1049)
T 3m1i_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ----NWPEFIPELIGSSS--SSVNVCENN 157 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHT--TCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHHc--cChHHHHHH
Confidence 999999999999999998765333 3799999999999999999996 68999999999986 366677788
Q ss_pred HHHHHHHHhhhCCCCcCCCCCcHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHc
Q 001030 174 INFLESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQIL 253 (1183)
Q Consensus 174 l~lL~~lv~E~s~~~ss~~~l~~~~h~k~~~~F~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~L 253 (1183)
+.+|..+.+|....+.+.++.....|. +..|+++ ++.||.++..+++.. ....+...+|+++..++
T Consensus 158 l~~L~~l~eev~~~~~~~~~~~r~~~l--k~~l~~~-~~~i~~~~~~~l~~~-----------~~~~~~~~aL~~l~~~l 223 (1049)
T 3m1i_C 158 MIVLKLLSEEVFDFSAEQMTQAKALHL--KNSMSKE-FEQIFKLCFQVLEQG-----------SSSSLIVATLESLLRYL 223 (1049)
T ss_dssp HHHHHHHHHHHHTSCTTTSCHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcchhhhhHHHHHH--HHHHHHH-HHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHH
Confidence 888888877765432224454444444 4677874 999999988888642 13467889999999999
Q ss_pred ccccccCCCCCccccccccccccccccCCCccccccccCCcchHHHhhccchHHHHHHHHHHhhhcccCCCCCCCchhHH
Q 001030 254 NWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGYWLDCPIAV 333 (1183)
Q Consensus 254 sw~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~l~llf~~~~~~~~~~~~~~~~~~~~l~~ 333 (1183)
+|...+. +.++.+++++|+.+.. +++++.
T Consensus 224 ~wi~~~~---------------------------------------~~~~~ll~~l~~~~l~------------~~~~~~ 252 (1049)
T 3m1i_C 224 HWIPYRY---------------------------------------IYETNILELLSTKFMT------------SPDTRA 252 (1049)
T ss_dssp TTSCTHH---------------------------------------HHSSSHHHHHHTHHHH------------SHHHHH
T ss_pred hhCCHHH---------------------------------------HhhhhHHHHHHHHhCC------------CHhHHH
Confidence 9987544 3446688888865543 267899
Q ss_pred HHHHHHHHHHhcccCcccCCChh---hHHHHHHHHHHhhhh-hcCChhhHHHHhhhCCC--hhhHHHHHHHHHHHHhhcC
Q 001030 334 SARKLIVQLCSLTGTVFPSDNGK---MQEHHLLQLLSGILE-WVDPPDVVAQAIESGKS--ESEMLDGCRALLSIATVTT 407 (1183)
Q Consensus 334 ~~l~cL~qLasl~~~~f~~~~~~---~r~~~l~~~l~~~~~-il~~~~~~~~~~~~g~~--~~~~~~~cr~l~~L~~~~~ 407 (1183)
.+++||.++.+.+- +....+ .-...+..++..+.. +++....+...+..+.+ ++.+..+|+++..+...+.
T Consensus 253 ~a~~~L~~i~~~~~---~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~ 329 (1049)
T 3m1i_C 253 ITLKCLTEVSNLKI---PQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNR 329 (1049)
T ss_dssp HHHHHHHHHHHCCC---CTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC---CcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999998641 222100 001122333433333 45443333333333322 2334578888877765431
Q ss_pred hhhHHhhhhccCcchhHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhhhHHHH
Q 001030 408 PFVFDRLLKSIRPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRNAAASL 487 (1183)
Q Consensus 408 ~~~l~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~es~~~lL~~W~~l~~~~~~~~~~~~~~~~~~~~~~~I 487 (1183)
.++..... .-..+..+....+.. + ...+ .+....++++|..+++.+.. ..........+..++
T Consensus 330 -----~~~~~~~~--~~~~l~~~l~~ll~~-~--~~~d----~~v~~~~lefw~~l~~~l~~---~~~~~~~~~~~l~~L 392 (1049)
T 3m1i_C 330 -----ALLESDES--LRELLLNAHQYLIQL-S--KIEE----RELFKTTLDYWHNLVADLFY---EPLKKHIYEEICSQL 392 (1049)
T ss_dssp -----HHHHSCGG--GHHHHHHHHHHHHHH-H--TSSC----HHHHHHHHHHHHHHHHHHHH---STTCGGGGHHHHHHH
T ss_pred -----HHHcCChh--hHHHHHHHHHHHHHH-H--cCCc----HHHHHHHHHHHHHHHHHHHh---chhHHHHHHHHHHHH
Confidence 22111000 011111111111221 1 1112 57788999999999884310 001111222344555
Q ss_pred HHHHHhcccccccccccCCCCccch------hhccHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhcccCCCC
Q 001030 488 FALIVESELKVASASAMDDNGEFNY------LQASISAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMID 561 (1183)
Q Consensus 488 ~~~yi~srl~~~~~~~~~e~d~~e~------~~~d~~~~~eqLe~i~~L~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~ 561 (1183)
... +..+|..|++....+||+.|. ++|++..|+...+++-.+++..+.++.+.+.+.+.+..+ ++..+
T Consensus 393 v~~-ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~-----~~~~~ 466 (1049)
T 3m1i_C 393 RLV-IIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQID-----GSEWS 466 (1049)
T ss_dssp HHH-HHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHT-----SSSCC
T ss_pred HHH-HHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhC-----CCCCC
Confidence 544 445777765432111222211 123345677888888899999999999998888876542 11223
Q ss_pred cchhHHHHHHHHHHHHhHhccCCCCCccCChhhhhhhhhhhhcccCch-HHHHHHHHHHHHhhhcCcccccccCCHHHHH
Q 001030 562 PTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHP-VVLLCGSIIKFAEWSLDPEARASVFSPRLME 640 (1183)
Q Consensus 562 ~~~~~E~L~Wli~i~g~~l~d~~~ge~~~iP~~i~~~~~~~~~~~~~~-vv~Li~~ll~l~~~~l~~~~~~~~~Sp~l~~ 640 (1183)
| .+..-+++..|++. +...+ ..+++ +..++..++.+++...+.. -.|.+..
T Consensus 467 W----~~~eaal~algsia-~~~~~------------------~~e~~~l~~v~~~l~~l~~~~~~~~-----~~~~v~~ 518 (1049)
T 3m1i_C 467 W----HNINTLSWAIGSIS-GTMSE------------------DTEKRFVVTVIKDLLDLTVKKRGKD-----NKAVVAS 518 (1049)
T ss_dssp H----HHHHHHHHHHHHTT-TSSCH------------------HHHHHHHHHHHHHHHHHTTSSCSHH-----HHHHHHH
T ss_pred H----HHHHHHHHHHHHHh-cccCc------------------hhhHHHHHHHHHHHHHHHhhhcccc-----chHHHHH
Confidence 3 34444444455553 22100 01122 3456666666654321110 2467787
Q ss_pred HHHHHHHHHHHhhcCCcccccccCCCCCCCCCccccchhhHhHHHHhhcCCCCchhHHHHHHHHHHhhccCCCCchhHHH
Q 001030 641 AIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQE 720 (1183)
Q Consensus 641 ~~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~f~~~~~g~~~l~~ll~~~~~~L~~~~~e~~v~~ 720 (1183)
+++|.++||++ |+. .+ ++.+.++.+.+...++.. +.+|..
T Consensus 519 ~~~~~lgry~~-~~~----~~------------~~~l~~vl~~ll~~l~~~-----------------------~~~V~~ 558 (1049)
T 3m1i_C 519 DIMYVVGQYPR-FLK----AH------------WNFLRTVILKLFEFMHET-----------------------HEGVQD 558 (1049)
T ss_dssp HHHHHHHHCHH-HHH----HC------------HHHHHHHHHHHHHHTTSS-----------------------CHHHHH
T ss_pred HHHHHHHHHHH-HHH----hH------------HHHHHHHHHHHHHHhcCC-----------------------CHHHHH
Confidence 89999999974 763 12 223334444444444432 244444
Q ss_pred HHHHHHHHHHhhccccchhhhc------chhHHHHHHHhhcchhhhcccchhhHHHHHHHHHHHhcCCCcccchHHHHHH
Q 001030 721 LTCNQLLHALVRRKNVCVHLVA------LGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDL 794 (1183)
Q Consensus 721 ~~~~~LL~~l~~~~~~~~~l~~------~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 794 (1183)
.+| ..|..++.... ..++. .|.+..+++.+.. ....++.+....+|++++.+++...+++....++..+
T Consensus 559 ~A~-~al~~l~~~~~--~~l~~~~~~~~~p~~~~il~~l~~--~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l 633 (1049)
T 3m1i_C 559 MAC-DTFIKIVQKCK--YHFVIQQPRESEPFIQTIIRDIQK--TTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDL 633 (1049)
T ss_dssp HHH-HHHHHHHHHHT--HHHHSCCTTCSSCHHHHHHHTHHH--HHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHH--HHhhcccCCCCCcHHHHHHHHHHH--HHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 455 45555554311 12210 2666666665422 1223555666789999999988766556788899999
Q ss_pred HHHHHHHHHHhhCCCccc-ccccchhHHHHHHHHHHHhhhhhhccCCCcHHHHHHHHHhhHHHHHHHHHHhcCChH----
Q 001030 795 TRHATAYLVELSGKNDLK-NVSQQPDIILLVSCLLERLRGAANATEPRTQKAIYEMGFSVMNPVLLLLEVYKHESA---- 869 (1183)
Q Consensus 795 m~pl~~~~~~l~~~~~~~-~~~~~~~ii~~v~~ll~~l~Gi~~a~~~~~~~~l~~~l~~~~~~~~~ll~~y~~~~~---- 869 (1183)
|.|+.++|.++++....+ +...+++.+..+..+++++..++.+.+....+.+ -.++.+++.+|...+.
T Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~-------~~i~~~~l~~~~~~~~~~~~ 706 (1049)
T 3m1i_C 634 MQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQL-------GHIYYNMLQLYRAVSSMISA 706 (1049)
T ss_dssp THHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 999999999987543211 1223455556677999999999998876533211 1222233333332221
Q ss_pred --------------------HHHHHHHHHHHHhhccccccccchhhhHHHHHHHHHHHhhhcccCcccccccccccccch
Q 001030 870 --------------------VVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAK 929 (1183)
Q Consensus 870 --------------------v~~~iL~~~~e~v~~~~~~l~~~~~~~lf~~~~~ll~~y~~~~~~~~~~~~~~~~~~~~~ 929 (1183)
+...+++++..+..+.. -+..-....+=..+..++..|.+.. ....+
T Consensus 707 ~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~-~l~~~~~~~~~~~l~~ll~~~~~~~------------~~~~~ 773 (1049)
T 3m1i_C 707 QVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKAR-NLDDVVKVLVEPLLNAVLEDYMNNV------------PDARD 773 (1049)
T ss_dssp HHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCS-CHHHHHHHTHHHHHHHHHHHHHHSC------------GGGCC
T ss_pred HHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHhCC------------ccccc
Confidence 12222233333322210 0000000000011112223332210 00011
Q ss_pred hhhhhhHHHHHHHHHHhhcCCCcccCCccccccccchhHHHHHhhhccccccccccccchhhhHHHHHHHHHHHhhChhh
Q 001030 930 TEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPET 1009 (1183)
Q Consensus 930 ~e~~k~l~~~l~lL~~~l~~~~~~f~~~~~~d~~~~~~~v~~~~l~~~iPli~~dll~yPkl~~~ff~Ll~~l~~~~~~~ 1009 (1183)
.+.+..+..++ ..+.+.+.+ ....++-.-+.++++||++++.++|+++..||.|+..+++.||..
T Consensus 774 ~~~l~l~~~ii----~~~~~~~~~-----------~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~ 838 (1049)
T 3m1i_C 774 AEVLNCMTTVV----EKVGHMIPQ-----------GVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAA 838 (1049)
T ss_dssp THHHHHHHHHH----HHHGGGCHH-----------HHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHH----HHHHHhhhh-----------hHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHH
Confidence 22222222222 222222111 111233355567788888889999999999999999999999999
Q ss_pred hhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHHHHHHHHHH
Q 001030 1010 VAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLL 1089 (1183)
Q Consensus 1010 l~~L~~~~f~~ll~sl~~Gl~~~d~~I~~~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~ 1089 (1183)
+..+|++.|..+++++.||++|.++++.+.+++++..+.+.... . +....... .....+..++..++
T Consensus 839 l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~--~-~~~~~~~~----------f~~~~~~~l~~~~~ 905 (1049)
T 3m1i_C 839 FLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIER--M-GNVPFANE----------FHKNYFFIFVSETF 905 (1049)
T ss_dssp HHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHH--S-CSCHHHHH----------HHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHh--c-CChHHHHH----------HHHHHHHHHHHHHH
Confidence 98889999999999999999999999999999999999987643 0 11011111 11345566777777
Q ss_pred HHHHhccCCCchhHHHhhhHHHHHh---------------------cCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhh
Q 001030 1090 QLLLFEDYSPDMVGTAADALFPLIL---------------------CEPRLYQRLGSELIERQANPPFKSRLANALQSLT 1148 (1183)
Q Consensus 1090 ~~~l~~~~~~~~~~~~s~~l~~Li~---------------------~~~~~f~~~~~~li~~q~~~~~~~~l~~~F~~L~ 1148 (1183)
..++ +.+...-....+..|..++. -++.++.+++.+++.+..+....++...+...|+
T Consensus 906 ~~l~-~~~h~s~~~~~~~~l~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~f~~~l~ 984 (1049)
T 3m1i_C 906 FVLT-DSDHKSGFSKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALT 984 (1049)
T ss_dssp HHHH-STTCGGGHHHHHHHHHHHHHHHHTTCCCSCSSCGGGSSTTCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHh-cchHhhhHHHHHHHHHHHHHHHhcCcccccccCccccCCCCCcHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 7643 34444334556666666652 1555889999999855421344567777778887
Q ss_pred cCCCCCCCcChhhHHHHHHHHHHHHHHhhhc
Q 001030 1149 SSNQLSSSLDRVNYQRFRKNLTNFLIEVRGF 1179 (1183)
Q Consensus 1149 ~~~~~~~~l~~~nr~~F~~~l~~F~~~vr~~ 1179 (1183)
+. +.++.+|++++++|+.++|++
T Consensus 985 ~~--------~~~~~~f~~~~rdf~~~~~~~ 1007 (1049)
T 3m1i_C 985 KQ--------YKDLVVFKGTLRDFLVQIKEV 1007 (1049)
T ss_dssp HC--------TTCHHHHHHHHHHHHHHHTSS
T ss_pred Hc--------cCCHHHHHHHHHHHhHhhhhh
Confidence 63 578899999999999999987
No 5
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=6.5e-34 Score=375.14 Aligned_cols=919 Identities=11% Similarity=0.070 Sum_probs=534.4
Q ss_pred HHHHHHHHHhhCCC--CHHHHHHHHHhhhcCCCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHHH
Q 001030 33 HSIEIACSSIQMHV--NPAAAEATILGLCQSPQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF 110 (1183)
Q Consensus 33 ~~le~~~~~l~~~~--~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ 110 (1183)
++++++++.+|+|. .|++|+++|.+|+++|++|..|..||+.+++++++|+|+.+|++.|.++|..+|+++|.+||++
T Consensus 7 ~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ 86 (971)
T 2x1g_F 7 ARLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQK 86 (971)
T ss_dssp ----CTHHHHHTSTTTC----CHHHHHTTTSTHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHH
Confidence 45566666667764 3899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccCC-----ChhhHHHHHHHHHHHHhhhC
Q 001030 111 CLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIH-----GVDTQFIGINFLESLVSEFS 185 (1183)
Q Consensus 111 ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~lL~~lv~E~s 185 (1183)
+++++.+.. +.+++|++|++.+++.|+|++|+ .|++++.++.+.+.+.. ++.++..++.+|..+.+|..
T Consensus 87 ll~~l~~~~-~~~~~vr~kl~~~la~i~~~~~p-----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~ 160 (971)
T 2x1g_F 87 ILESIVRFA-GGPKIVLNRLCISLGAYIVHMLG-----EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQ 160 (971)
T ss_dssp HHHHHHHHT-TSCHHHHHHHHHHHHHHHHHTTC-----C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHHHHccc-----cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHh
Confidence 999999875 45799999999999999999998 48899999999886410 45689999999999999965
Q ss_pred CCCcCCCCCcHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHcc--cccccCCCC
Q 001030 186 PSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILN--WDFQFDTSG 263 (1183)
Q Consensus 186 ~~~ss~~~l~~~~h~k~~~~F~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Ls--w~f~~~~~~ 263 (1183)
..+ +.. +....+..++. .++.++.++..++..... .........+...+|+|+..++. |.+.+
T Consensus 161 ~~~----~~~--~r~~~~~~l~~-~~~~vl~ll~~~l~~~~~----~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---- 225 (971)
T 2x1g_F 161 VIH----TSV--KRVVLRAEIAK-RVQLVIHTVERYLKLQMN----RVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---- 225 (971)
T ss_dssp HCC----CSS--CHHHHHHHHHT-THHHHHHHHHHHHHHHTT----SCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----
T ss_pred ccC----cHH--HHHHHHHHHHH-HHHHHHHHHHHHHhcccC----CCCCccchhHHHHHHHHHHHHHhhCCcCcc----
Confidence 442 111 12222344444 478888877777654321 00001123678889999987776 66433
Q ss_pred CccccccccccccccccCCCccccccccCCcchHHHhhccchHHHHHHH---HH-HhhhcccCCC-CCCCchhHHHHHHH
Q 001030 264 RKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNL---YS-ALRQKFSSEG-YWLDCPIAVSARKL 338 (1183)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~l~llf~~---~~-~~~~~~~~~~-~~~~~~l~~~~l~c 338 (1183)
..+.+++.+|.+ |. ..+.. ++|. ...+++++..+++|
T Consensus 226 -------------------------------------~~~~ll~~l~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~ 267 (971)
T 2x1g_F 226 -------------------------------------GCVTITAVLLEVVHKCYWPCIHA-GDGCMTADENELAESCLKT 267 (971)
T ss_dssp -------------------------------------GHHHHHHHHHHHHHHHHSSSCC----CCCCHHHHHHHHHHHHH
T ss_pred -------------------------------------ccccHHHHHHhhhhhhccccccc-cccccCcCCcHHHHHHHHH
Confidence 114567777761 11 00000 0000 00136789999999
Q ss_pred HHHHHhcccCcccCCChhhHHHHHHHHHHhhhhhcCChhhHHHHhhhCCC---hhhHHHHHHHHHHHHhhcChhhHHhhh
Q 001030 339 IVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKS---ESEMLDGCRALLSIATVTTPFVFDRLL 415 (1183)
Q Consensus 339 L~qLasl~~~~f~~~~~~~r~~~l~~~l~~~~~il~~~~~~~~~~~~g~~---~~~~~~~cr~l~~L~~~~~~~~l~~~~ 415 (1183)
++++.+...+ . .+..++..++.++..+... ...+... -+ ++....+||++.++...+.. .+.+-+
T Consensus 268 l~~i~~~~~~-----~--~~~~~~~~l~~~~~~~~~~---~~~~~~~-~d~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~ 335 (971)
T 2x1g_F 268 MVNIIIQPDC-----H--NYPKTAFVLIKMFLDSLSE---ITKTEWK-RENDNEDIIVHIYMLFVSSVERHST-LLLSGI 335 (971)
T ss_dssp HHHHHHCSGG-----G--GCHHHHHHHHHHHHHHHHH---HHHHHSS-SSCSCSHHHHHHHHHHHHHHHHTHH-HHHHHH
T ss_pred HHHHHcCccc-----c--ccHHHHHHHHHHHHHhHHH---HHHHHhc-ccccchHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 9999875321 1 2456777777766554321 1111111 13 36788899999999876531 111000
Q ss_pred hccCcchhHHHHHHHHHHHHHHHhhc-c--cccccchHHHHHHHHHHHHHhhhcccccCCCCCCCh---hhhhhHHHHHH
Q 001030 416 KSIRPFGTLTLLSNLMCEVVKVLMMN-N--TEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPL---EVRNAAASLFA 489 (1183)
Q Consensus 416 ~~~~~~~~l~~l~~l~~~~~~~~~~~-~--~~~~~~~~es~~~lL~~W~~l~~~~~~~~~~~~~~~---~~~~~~~~I~~ 489 (1183)
..... .....+..+....+. .+.. . ..+ .+.....+.+|..+++...........+. ...++..++..
T Consensus 336 ~~~~~-~~~~~l~~~l~~ll~-~~~~~~~~~~~----~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 409 (971)
T 2x1g_F 336 TSADP-ELSILVHRIVQEILH-CTDKPGIYPVE----ESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTR 409 (971)
T ss_dssp HTCCH-HHHHHHHHHHHHHHH-HHHCSSCTTTT----CTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHH
T ss_pred ccCcc-cccHHHHHHHHHHHH-HHcCCCCCCcc----hhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 00000 000111111111122 1111 0 112 46678999999999763311100001111 11122233333
Q ss_pred HHHhcccccccccccCCCCccchhhccH-HHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHhcccCCCCcchhHHH
Q 001030 490 LIVESELKVASASAMDDNGEFNYLQASI-SAMDERLSSYALIARAAIDATVPLLTRLFSERFARLHQGRGMIDPTETLEE 568 (1183)
Q Consensus 490 ~yi~srl~~~~~~~~~e~d~~e~~~~d~-~~~~eqLe~i~~L~R~~~~~t~~~L~~ll~~~~~~l~~~~~~~~~~~~~E~ 568 (1183)
..+. ++..|+.... ++++.+++++- ...+..-+++..+++..++++.+.+.+.+.+....+.. +..+ |.+
T Consensus 410 ~l~~-~~~~p~~~~~--~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~--~~~~----w~~ 480 (971)
T 2x1g_F 410 ILVR-KSEQPDEKSL--AKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQR--HPTH----WTK 480 (971)
T ss_dssp HHHH-HTSCCCTTTT--SCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHH--CTTC----CHH
T ss_pred HHHH-HhcCCCcccc--cccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccC--CCCc----HHH
Confidence 3332 4443332110 11111111121 23345566777778877788888888888877665531 1123 345
Q ss_pred HHHHHHHHHhHhccCCCCCccCChhhhhhhhhhhhcccCchHHHHHHHHHHHHhhhcCcccccccCCHHHHHHHHHHHHH
Q 001030 569 LYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPRLMEAIVWFLAR 648 (1183)
Q Consensus 569 L~Wli~i~g~~l~d~~~ge~~~iP~~i~~~~~~~~~~~~~~vv~Li~~ll~l~~~~l~~~~~~~~~Sp~l~~~~l~fl~~ 648 (1183)
..-+++..|++ ++....+ ....+..++..+..+ ..+ . ..|.+..+.+|+++|
T Consensus 481 ~eaal~~l~~i-ae~~~~~------------------~~~~l~~l~~~l~~l-----~~~--d--~~~~vr~~a~~~l~~ 532 (971)
T 2x1g_F 481 LEACIYSFQSV-AEHFGGE------------------EKRQIPRLMRVLAEI-----PYE--K--LNVKLLGTALETMGS 532 (971)
T ss_dssp HHHHHHHHHHT-TTC------------------------CHHHHHHHHHHHS-----CTT--T--SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhhcChh------------------hhHHHHHHHHHHHhc-----Ccc--c--cCHHHHHHHHHHHHH
Confidence 66667767776 3322100 011122333322222 111 1 258899999999999
Q ss_pred HHHhhcCCcccccccCCCCCCCCCccccchhhHhHHHHhhcCCCCchhHHHHHHHHHHhhccCCCCchhHHHHHHHHHHH
Q 001030 649 WSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKDLQELTCNQLLH 728 (1183)
Q Consensus 649 ~~~~YL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~f~~~~~g~~~l~~ll~~~~~~L~~~~~e~~v~~~~~~~LL~ 728 (1183)
|+. |+..+ .+....+.+.+...++ ++|...++ ..|.
T Consensus 533 ~~~-~l~~~----------------~~~l~~vl~~l~~~l~--------------------------~~v~~~A~-~al~ 568 (971)
T 2x1g_F 533 YCN-WLMEN----------------PAYIPPAINLLVRGLN--------------------------SSMSAQAT-LGLK 568 (971)
T ss_dssp THH-HHC--------------------CHHHHHHHHHHHHH--------------------------SSCHHHHH-HHHH
T ss_pred HHH-HHhcC----------------HHHHHHHHHHHHHHhC--------------------------hHHHHHHH-HHHH
Confidence 984 77421 1112223333332221 23444455 4555
Q ss_pred HHhhccccchhhhcchhHHHHHHHhhcchhhhcccchhhHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHhhCC
Q 001030 729 ALVRRKNVCVHLVALGSWRELASAFANDKTLILLNSTNQRSLAQTLVLSAYGMRNSESSNQYVRDLTRHATAYLVELSGK 808 (1183)
Q Consensus 729 ~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~m~pl~~~~~~l~~~ 808 (1183)
.+++... ..+ .|.+..+++.+..-..-..++.+.+..+|++++.++.+.. ++....++..++.|+..+|+++.+.
T Consensus 569 ~l~~~~~--~~l--~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~-~~~~~~~~~~ll~~l~~~l~~~~~~ 643 (971)
T 2x1g_F 569 ELCRDCQ--LQL--KPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR-PEEIPKYLDIIVSPCFEELQAICQA 643 (971)
T ss_dssp HHHHHCH--HHH--HHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC-TTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHH--Hhc--cccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5553211 111 2555555554321101011455667789999999987554 6677889999999999999998765
Q ss_pred CcccccccchhHHHHHHHHHHHhhhhhhccCCCc---------HHHHHHHHHhhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001030 809 NDLKNVSQQPDIILLVSCLLERLRGAANATEPRT---------QKAIYEMGFSVMNPVLLLLEVYKHESAVVYLLLKFVV 879 (1183)
Q Consensus 809 ~~~~~~~~~~~ii~~v~~ll~~l~Gi~~a~~~~~---------~~~l~~~l~~~~~~~~~ll~~y~~~~~v~~~iL~~~~ 879 (1183)
+.. +++-+..++..+..+.+++.+..... ...+..++...++++..+++.|.++++|++.+++++.
T Consensus 644 ~~~-----~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~ 718 (971)
T 2x1g_F 644 DSK-----TPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMK 718 (971)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCC-----ChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 421 23334455677777777777665320 1234555666688888888888888999999999999
Q ss_pred HHhhccccccccchhhhHHHHHHHHHHHhhhcccCcccccccccccccchhhhhhhHHHHHHHHHHhhcCCCcccCCc-c
Q 001030 880 DWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSD-S 958 (1183)
Q Consensus 880 e~v~~~~~~l~~~~~~~lf~~~~~ll~~y~~~~~~~~~~~~~~~~~~~~~~e~~k~l~~~l~lL~~~l~~~~~~f~~~-~ 958 (1183)
..+...+..+.+ -.-.++ -.++..|.+. + . ..++.+++.++.+ | |.+ .
T Consensus 719 ~~~~~~~~~~~p-~l~~~~---~~l~~~~~~~------------------~--~---~~~l~l~~~~i~~-~---~~~~~ 767 (971)
T 2x1g_F 719 HAITNLRSSFQP-MLQDLC---LFIVASFQTR------------------C--C---APTLEISKTAIVM-F---FKDEG 767 (971)
T ss_dssp HHHHHHHC--CT-HHHHHH---HHHHHHCC--------------------C--C---HHHHHHHHHHHTT-C---CC---
T ss_pred HHHHhhhhhccc-cHHHHH---HHHHHHHhcC------------------C--c---hHHHHHHHHHHHH-h---CCCcc
Confidence 987754433322 111111 1222333210 0 1 1245555544432 1 211 0
Q ss_pred ccccccchhHHHHHh-hhccccccc----cccccchhhhHHHHHHHHHHHhhChhhhhcCCHHH-HHHHHHHHHhhccCC
Q 001030 959 IEAQAINISQVVFFG-LHIVTPLMS----GDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEA-FAHVLGTLDFGLHHQ 1032 (1183)
Q Consensus 959 ~~d~~~~~~~v~~~~-l~~~iPli~----~dll~yPkl~~~ff~Ll~~l~~~~~~~l~~L~~~~-f~~ll~sl~~Gl~~~ 1032 (1183)
+.+ .....+.. ...++.+++ .++.+.|++++.||.|+..+.+.+|..+.. +.. +..++++...++++.
T Consensus 768 ~~~----~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~--s~~~l~~i~~~~~~~l~~~ 841 (971)
T 2x1g_F 768 CKP----LMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLED--KTLAYDRLVFYAQRGMTLP 841 (971)
T ss_dssp --H----HHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGC--TTSCHHHHHHHHHHHHTSS
T ss_pred hHH----HHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcC--CcccHHHHHHHHHHHcCCC
Confidence 100 00111100 111222222 256689999999999999999999998854 244 799999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhccCCCchhHHHhhhHHHH
Q 001030 1033 DSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPL 1112 (1183)
Q Consensus 1033 d~~I~~~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~L 1112 (1183)
+++..+.++.++..+.+.- . ...... ++ .......++..++..+ .+.+..+.++.++..|..+
T Consensus 842 ~~~~~~s~~~fl~~~i~~~-~----~~~~~~-~~----------~~~~g~~l~~~l~~~~-~~~~~~s~~~~~a~~l~~l 904 (971)
T 2x1g_F 842 ESGAIRNSIQFLTHFVMQS-R----NHAHVT-EV----------VLATGEQTLYTAMMCV-GYLTPRSQVDKFADILLAM 904 (971)
T ss_dssp CSSHHHHHHHHHHHHHHHH-T----TCHHHH-HH----------HHHHHHHHHHHHHHHH-HTTSCGGGGGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcC-C----chHHHH-HH----------HHHhHHHHHHHHHHHh-cccCChhHHHHHHHHHHHH
Confidence 9999999999998887651 0 100011 11 1244556777777764 4567777788999999999
Q ss_pred HhcCHHHHHHHHHHHHHcC--CCchhHHHHH-HHHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHhhhccc
Q 001030 1113 ILCEPRLYQRLGSELIERQ--ANPPFKSRLA-NALQSLTSSNQLSSSLDRVNYQRFRKNLTNFLIEVRGFLR 1181 (1183)
Q Consensus 1113 i~~~~~~f~~~~~~li~~q--~~~~~~~~l~-~~F~~L~~~~~~~~~l~~~nr~~F~~~l~~F~~~vr~~L~ 1181 (1183)
+..+++.+..|+.+.+... |.....+..+ ++..+|+.. +.++++|++.+++|...+||+-.
T Consensus 905 ~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~~--------~~~~r~~~~~~~~f~~~~r~~~~ 968 (971)
T 2x1g_F 905 NRKYAAEMAVWMKSLMSTPNFPTQLITDADKTRYTALIIKE--------KVNKRLLQQHLSEMAMKTRGLTE 968 (971)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCSCSSSCHHHHHHHHHHHHHC--------SSCHHHHHHHHHHHHHHHHC---
T ss_pred HHHCcHHHHHHHHHHhcccCCCCCcCCHHHHHHHHHHHHHH--------HhChHhHHHHHHHHHHHHcCccc
Confidence 9999999999999888632 3222333434 444666542 34799999999999999998743
No 6
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=2e-31 Score=345.35 Aligned_cols=921 Identities=12% Similarity=0.110 Sum_probs=497.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhCCC-C---HHHHHHHHHhhhcCCCcHHHHHHHHhcCC--chhHHHHHHHHHHHHHhh
Q 001030 21 GPADLAKLQSIMHSIEIACSSIQMHV-N---PAAAEATILGLCQSPQPYKACQFILENSQ--VANARFQAAAAIRDAAMR 94 (1183)
Q Consensus 21 ~~~d~~~l~~~~~~le~~~~~l~~~~-~---r~~Ae~~L~~f~~~~~~~~~~~~iL~~S~--~~~~~f~a~~~L~~~i~~ 94 (1183)
|+||++++..++ +..++|. + |++|+++|.+|+++|++|..|..||.+++ +++++|||+++|++.|.
T Consensus 1 ~~m~~~~v~~Al-------~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~- 72 (980)
T 3ibv_A 1 GPMSAQDVENAV-------EAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR- 72 (980)
T ss_dssp --CHHHHHHHHH-------HHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH-
T ss_pred CCCCHHHHHHHH-------HHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-
Confidence 688877663333 2234553 3 69999999999999999999999999875 79999999999999999
Q ss_pred ccCcCCHH----HHHHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccCCCh-h
Q 001030 95 EWSFLTAD----EKKSLIGFCLCFVMQHA-SSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGV-D 168 (1183)
Q Consensus 95 ~W~~l~~~----~k~~lr~~ll~~l~~~~-~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~ 168 (1183)
.+|++ ++..||+++++++.+.. .+.+++|++|++.+++.|+|+.||+ .|++++.++.+.+.+ +++ .
T Consensus 73 ---~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~----~Wp~~i~~l~~~~~~-~~~~~ 144 (980)
T 3ibv_A 73 ---EWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS----NWNDFFASLQGVIAA-SSQSE 144 (980)
T ss_dssp ---HCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHHH-HCCHH
T ss_pred ---hCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc----cCchHHHHHHHHhcC-CChhH
Confidence 58999 99999999999998742 1468999999999999999999998 699999999999874 223 4
Q ss_pred hHHHHHHHHHHHHhhhCCCCcCCCCCcHHHHHH---HHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHH
Q 001030 169 TQFIGINFLESLVSEFSPSTSSAMGLPREFHEQ---CRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAA 245 (1183)
Q Consensus 169 ~~~~~l~lL~~lv~E~s~~~ss~~~l~~~~h~k---~~~~F~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~ 245 (1183)
.....|++|..+-+|....+ +..+.+.+.| .|..+++++++.|++.++.+|.+.... .+..+...+
T Consensus 145 ~~~~~LriL~~i~EEv~~~~---~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~--------~~~~l~~~~ 213 (980)
T 3ibv_A 145 FSNFYLKVLLSIGDEIADSL---VLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNA--------KNYGTVGLC 213 (980)
T ss_dssp HHHHHHHHHHHHHHHHCCCC---SCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--------TCHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHhcc---cccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhcc--------CCHHHHHHH
Confidence 56788999998888886552 2334433333 367888888999999999999876521 244678999
Q ss_pred HHHHHHHcccccccCCCCCccccccccccccccccCCCccccccccCCcchHHHhhccchHHHHHHHHHHhhhcccCCCC
Q 001030 246 LRLLHQILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALISSGHIVWLLNLYSALRQKFSSEGY 325 (1183)
Q Consensus 246 L~l~~~~Lsw~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~~~~l~llf~~~~~~~~~~~~~~~ 325 (1183)
|+|+..+++|...+. +.++.+++++|....
T Consensus 214 L~~l~s~i~wi~~~~---------------------------------------i~~~~ll~~l~~~L~----------- 243 (980)
T 3ibv_A 214 LQVYAQWVSWININL---------------------------------------IVNEPCMNLLYSFLQ----------- 243 (980)
T ss_dssp HHHHHHHTTTSCHHH---------------------------------------HHCHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHhhcCHHh---------------------------------------hhcchHHHHHHHHcC-----------
Confidence 999999999987654 556778888886553
Q ss_pred CCCchhHHHHHHHHHHHHhcccCcccCCChhhHHHHHHHHHHhhhhhcCChhhHHHHhhhCCChhhHHHHHHHHHHHHhh
Q 001030 326 WLDCPIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQLLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATV 405 (1183)
Q Consensus 326 ~~~~~l~~~~l~cL~qLasl~~~~f~~~~~~~r~~~l~~~l~~~~~il~~~~~~~~~~~~g~~~~~~~~~cr~l~~L~~~ 405 (1183)
+++++..|.+||.++.+-+.+ ++ .+...+..+ ++..++.... ...-+.+....+||++..+...
T Consensus 244 --~~~~r~~A~ecL~ei~~k~~~----~~--~k~~li~~l--~L~~~~~~l~------~~~~D~d~~~~la~L~~~~ge~ 307 (980)
T 3ibv_A 244 --IEELRCAACETMTEIVNKKMK----PL--EKLNLLNIL--NLNLFFSKSQ------EQSTDPNFDEHVAKLINAQGVE 307 (980)
T ss_dssp --SHHHHHHHHHHHHHHHHSCCC----HH--HHHHHHHHH--HHHHHHCC-----------CCHHHHHHHHHHHHHHHHH
T ss_pred --ChHHHHHHHHHHHHHHHcCCC----hh--hHHHHHHHH--hHHHHHHHHh------cccccHHHHHHHHHHHHHHHHH
Confidence 267899999999999985432 11 234444332 2333443211 0012445556788888777654
Q ss_pred cChhhHHhhhhccCc--ch-----hHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhcccccCCCCCCCh
Q 001030 406 TTPFVFDRLLKSIRP--FG-----TLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPL 478 (1183)
Q Consensus 406 ~~~~~l~~~~~~~~~--~~-----~l~~l~~l~~~~~~~~~~~~~~~~~~~~es~~~lL~~W~~l~~~~~~~~~~~~~~~ 478 (1183)
+. .. ..... .. ....+..+....+... ...+ .+.....+.||..++....+...+.+.+.
T Consensus 308 l~-----~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~---~~~~----deVs~~t~~Fw~~~l~~~~~~~~~~~~~~ 374 (980)
T 3ibv_A 308 LV-----AI-KSDPSELSPELKENCSFQLYNLFPYLIRYL---SDDY----DETSTAVFPFLSDLLVSLRKESSSKELSA 374 (980)
T ss_dssp HH-----HH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHH---TCSS----HHHHHTTHHHHHHHHHHHHHHTTSCCCCH
T ss_pred HH-----HH-ccCccccchhhhhhHHHHHHHHHHHHHHHh---CCCc----hhHHHHHHHHHHHHHHHHHhccccccccH
Confidence 22 11 11000 00 0011111111112221 1122 36777899999999875443221222333
Q ss_pred hhhhhHHHHHHHHHhcccccccccccCCCCccchhhccHHHHHHH-HHHHHHHhhhchhhhHHHHHHHHHHHHHHHhccc
Q 001030 479 EVRNAAASLFALIVESELKVASASAMDDNGEFNYLQASISAMDER-LSSYALIARAAIDATVPLLTRLFSERFARLHQGR 557 (1183)
Q Consensus 479 ~~~~~~~~I~~~yi~srl~~~~~~~~~e~d~~e~~~~d~~~~~eq-Le~i~~L~R~~~~~t~~~L~~ll~~~~~~l~~~~ 557 (1183)
....+..++... +..||+.|+....+++||+|++ ++-..|+.. -..+-.++...++....++.+.+...+.+...
T Consensus 375 ~~~~~l~~Ll~~-li~k~~yp~d~~~~~~~d~ed~-~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~-- 450 (980)
T 3ibv_A 375 SLKEFLKSLLEA-IIKKMKYDESQEWDDDPDSEEE-AEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAAT-- 450 (980)
T ss_dssp HHHHHHHHHHHH-HHHTTSCCTTCCCCCCSSSSTH-HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHH-HHHHccCCCccccccccchhHH-HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhc--
Confidence 333344455544 3447777654321111111111 111113222 22333445566777777666666655543221
Q ss_pred CCCCcchhHHHHHHHHHHHHhHhccCCCCCccCChhhhhhhhhhhhcccCchHHHHHHHHHHHHhhhcCcccccccCCHH
Q 001030 558 GMIDPTETLEELYSLLLITGHVLADEGEGEIPVVPNAIQTHFVDTIEAAKHPVVLLCGSIIKFAEWSLDPEARASVFSPR 637 (1183)
Q Consensus 558 ~~~~~~~~~E~L~Wli~i~g~~l~d~~~ge~~~iP~~i~~~~~~~~~~~~~~vv~Li~~ll~l~~~~l~~~~~~~~~Sp~ 637 (1183)
+ .....|+++.-.++..|++ ++...+....++ .+...-| .++.-+.++.+..+ . ..-.|.
T Consensus 451 ~--~~~~~W~~~EaaL~~l~~i-aE~i~~~~~~~~----------~~~~~lp--~l~~ll~~ll~s~i----~-~~~hp~ 510 (980)
T 3ibv_A 451 L--SPENSWQLIEFALYETYIF-GEGLRGPDAFFN----------EVDKSPT--VLSQILALVTTSQV----C-RHPHPL 510 (980)
T ss_dssp S--CHHHHHHHHHHHHHHHHHT-TTTCCSGGGTBC----------SSSCCBC--HHHHHHHHHHHSST----T-TCCCHH
T ss_pred c--cCCCCHHHHHHHHHHHHHH-HhhccccccccC----------cccchhH--HHHHHHHHHHhCCC----C-CCCCHH
Confidence 1 1124688999999888886 543211000000 0001112 33333334433211 1 113689
Q ss_pred HHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCccccchhhHhHHHHhhcCCCCchhHHHHHHHHHHhhccCCCCchh
Q 001030 638 LMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPVLDIIVRISMTTLVSYPGEKD 717 (1183)
Q Consensus 638 l~~~~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~f~~~~~g~~~l~~ll~~~~~~L~~~~~e~~ 717 (1183)
+..+.+|+++||.+ |+. . + .+.+..+.+.+...+|..++ +..
T Consensus 511 V~~~~~~~l~rys~-~~~---~-~------------~~~l~~~L~~ll~~~gl~~~---------------------~~~ 552 (980)
T 3ibv_A 511 VQLLYMEILVRYAS-FFD---Y-E------------SAAIPALIEYFVGPRGIHNT---------------------NER 552 (980)
T ss_dssp HHHHHHHHHHHTGG-GGG---T-C------------CTTHHHHHHHHTSTTTTTCC---------------------CTT
T ss_pred HHHHHHHHHHHHHH-HHh---c-C------------chhHHHHHHHHhccccccCC---------------------Chh
Confidence 99999999999974 884 2 2 12222222333331121111 112
Q ss_pred HHHHHHHHHHHHHhhccccchhhhcchhHHHHHHHhhcchhhhcc-------------------cchhhHHHHHHHHHHH
Q 001030 718 LQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLILL-------------------NSTNQRSLAQTLVLSA 778 (1183)
Q Consensus 718 v~~~~~~~LL~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~l-------------------~~~~~~~l~~~l~~~~ 778 (1183)
|...++ .+|..+.+... ..+ .|....+++.+..--..... +.+.+..+|+++|.++
T Consensus 553 V~~~a~-~af~~f~~~~~--~~L--~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li 627 (980)
T 3ibv_A 553 VRPRAW-YLFYRFVKSIK--KQV--VNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLI 627 (980)
T ss_dssp THHHHH-HHHHHHHHHTT--TTC--SSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHhh--HHh--hhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHH
Confidence 222222 23333322110 001 12333333322110000000 0123557999999998
Q ss_pred hcCC-CcccchHHHHHHHHHHHHHHHHhhCCCcccccccchhHHHHHHHHHHHhhhhhhccCCC--cHHHHHHHHHhhHH
Q 001030 779 YGMR-NSESSNQYVRDLTRHATAYLVELSGKNDLKNVSQQPDIILLVSCLLERLRGAANATEPR--TQKAIYEMGFSVMN 855 (1183)
Q Consensus 779 ~~~~-~~~~~~~~~~~~m~pl~~~~~~l~~~~~~~~~~~~~~ii~~v~~ll~~l~Gi~~a~~~~--~~~~l~~~l~~~~~ 855 (1183)
+... +++.+..+++.++.|+...++..++...... .+.. ++..++..+.-++++.... ....+.+.|.+.++
T Consensus 628 ~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~----~~~~-~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~ 702 (980)
T 3ibv_A 628 SSGNLTPEEQALYCDSLINALIGKANAALSSDLSAL----ENII-SVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASD 702 (980)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC------CHHH-HHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCc----cHHH-HHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHH
Confidence 7655 4567788999999999999999986543211 1111 3334444444444443211 11125677778899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHhhccccccccchhhhHHHHHHHHHHHhhhcccCcccccccccccccchhhhhhh
Q 001030 856 PVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQETNIVIDFCTRLLQLYSSHNIGKMLMTQSSCLLGEAKTEKYKD 935 (1183)
Q Consensus 856 ~~~~ll~~y~~~~~v~~~iL~~~~e~v~~~~~~l~~~~~~~lf~~~~~ll~~y~~~~~~~~~~~~~~~~~~~~~~e~~k~ 935 (1183)
.+..+++.|..+..|...+.++|...+...+..+.+ .+=+.+-.++..|.. ..+.+
T Consensus 703 ~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p----~lp~~i~~ll~~~~~--------------------~e~~~ 758 (980)
T 3ibv_A 703 EIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLP----KVPQLISILLNSIDM--------------------NELVD 758 (980)
T ss_dssp HHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTT----THHHHHHHHHHHCCT--------------------TTHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHH----HHHHHHHHHHhcCCH--------------------HHHHH
Confidence 999999999999999999999999999876655433 111112222222211 11222
Q ss_pred HHHHHHHHHHhhcCCCcccCCcccccccc-chhHHHHHhhhccccccccccccchhhhHHHHHHHHHHHhhChhhhh-cC
Q 001030 936 LRALFQLLSNLCSKDLVDFSSDSIEAQAI-NISQVVFFGLHIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVA-QL 1013 (1183)
Q Consensus 936 l~~~l~lL~~~l~~~~~~f~~~~~~d~~~-~~~~v~~~~l~~~iPli~~dll~yPkl~~~ff~Ll~~l~~~~~~~l~-~L 1013 (1183)
..-++..+.+...+++.++- +..+ .....+|..+.. -+.-|+.+.+-+++.++||.++..+..+.-..+. .-
T Consensus 759 fL~l~~qli~~f~~~~~~~l-----~~ll~~l~~~if~~l~~-~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~ 832 (980)
T 3ibv_A 759 VLSFISQLIHIYKDNMMEIT-----NRMLPTLLMRIFSSLSA-APQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTE 832 (980)
T ss_dssp HHHHHHHHHHHTTTTSHHHH-----HHHHHHHHHHHHHHTTC-----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCC
Confidence 22222222222222211100 0000 011222222221 1111234557788999999999999986644443 22
Q ss_pred -CHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHHHHHHHHHHHH
Q 001030 1014 -STEAFAHVLGTLDF-GLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQL 1091 (1183)
Q Consensus 1014 -~~~~f~~ll~sl~~-Gl~~~d~~I~~~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~ 1091 (1183)
+...|..++.++.. |..+.|+...+.|+.++.++++.+.... +.+|+. .=++. ++.+.|..
T Consensus 833 ~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~--~~~gf~--------------~f~~~-~~~~~f~~ 895 (980)
T 3ibv_A 833 ENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKD--GIAGFE--------------NFTLS-LTPLCFEM 895 (980)
T ss_dssp HHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC---------CCHH--------------HHHHH-HHHHHHHG
T ss_pred cchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHCCCC--cchHHH--------------HHHHH-HHHHHHHh
Confidence 23568888888774 4667899999999999999998774221 112221 11233 56666665
Q ss_pred HHhccCCCc------hhHHHhhhHHHHHhcCHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHhhcCCCCCCCcChhhHHH
Q 001030 1092 LLFEDYSPD------MVGTAADALFPLILCEPRLYQRLGSELIERQ-ANPPFKSRLANALQSLTSSNQLSSSLDRVNYQR 1164 (1183)
Q Consensus 1092 ~l~~~~~~~------~~~~~s~~l~~Li~~~~~~f~~~~~~li~~q-~~~~~~~~l~~~F~~L~~~~~~~~~l~~~nr~~ 1164 (1183)
.+..+++.. .+..++..+-.+.....+.|-++. -+.- |.-...+.+.+.|.+-+. ..+...
T Consensus 896 p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g~~~~~~l---~~~~lp~~~~~~~~~~~~~~~l~---------~~~~k~ 963 (980)
T 3ibv_A 896 PVNPNFNTRDGQSLVVLGELAGLQKIILEKLGDIYKSYL---VTVYFPTVNFPDVMASEYLQALS---------NLDSRS 963 (980)
T ss_dssp GGC----------CHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTTTC----CCHHHHHHHC-----------------
T ss_pred hcCCCCChhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHH---HHhcCCcCCCCHHHHHHHHHHHh---------ccchhh
Confidence 444444321 122333333333222223333332 1221 221223444444544433 245778
Q ss_pred HHHHHHHHHHHhhh
Q 001030 1165 FRKNLTNFLIEVRG 1178 (1183)
Q Consensus 1165 F~~~l~~F~~~vr~ 1178 (1183)
|++-+..|+...|+
T Consensus 964 f~~~~~~~~~~~~~ 977 (980)
T 3ibv_A 964 FKQFFQKFIQALKS 977 (980)
T ss_dssp --------CHHHHC
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999998886
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.96 E-value=3e-25 Score=295.02 Aligned_cols=627 Identities=12% Similarity=0.099 Sum_probs=365.5
Q ss_pred HHHHHHHHHHHHHHHhhCCC-C---HHHHHHHHHhhhcCCCcHHHHHHHHh-cCCchhHHHHHHHHHHHHHhhccCcCCH
Q 001030 27 KLQSIMHSIEIACSSIQMHV-N---PAAAEATILGLCQSPQPYKACQFILE-NSQVANARFQAAAAIRDAAMREWSFLTA 101 (1183)
Q Consensus 27 ~l~~~~~~le~~~~~l~~~~-~---r~~Ae~~L~~f~~~~~~~~~~~~iL~-~S~~~~~~f~a~~~L~~~i~~~W~~l~~ 101 (1183)
+.+..+++++++++.+|+|. + |++|+++|.+|+++|+.|..|..+|. .+.+++++|+|+.+|++.|.++|..+++
T Consensus 5 ~~~~~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~ 84 (1204)
T 3a6p_A 5 QVNALCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSR 84 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCH
T ss_pred hHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCH
Confidence 44556788999999999983 3 79999999999999999999999997 7888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccC---CCchHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccCCChhhHHHHHHHHH
Q 001030 102 DEKKSLIGFCLCFVMQHAS---SPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLE 178 (1183)
Q Consensus 102 ~~k~~lr~~ll~~l~~~~~---~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~ 178 (1183)
++|..||+++++++.+... +.+++|++|++++++.|+|++||+ .|++++.++.+.+.+ ++.++..++.+|.
T Consensus 85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~----~Wp~ll~~L~~~~~~--~~~~~e~~L~iL~ 158 (1204)
T 3a6p_A 85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ----HWPDMLIELDTLSKQ--GETQTELVMFILL 158 (1204)
T ss_dssp HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHhcC--CHHHHHHHHHHHH
Confidence 9999999999999887631 157999999999999999999997 699999999999874 6778999999999
Q ss_pred HHHhhhCCCCcCCCCCcHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhh------c-cchhhhHHHHHHHHHHHHHH
Q 001030 179 SLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQII------E-SDAAASEVKACTAALRLLHQ 251 (1183)
Q Consensus 179 ~lv~E~s~~~ss~~~l~~~~h~k~~~~F~~~~L~~if~~~~~~L~~~~~~~~------~-~~~~~~~~~l~~~~L~l~~~ 251 (1183)
.+.+|+...+ + +...++++.+..+++. ++.||.++.++|++...... . .+.......++.++|+++.+
T Consensus 159 ~L~Eev~~~~--~--~~~~r~~~l~~~l~~~-~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 159 RLAEDVVTFQ--T--LPPQRRRDIQQTLTQN-MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHTSC--C--SCHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcccc--c--hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 9999965442 1 2235666677888886 99999999999876532100 0 00012345688999999999
Q ss_pred HcccccccCCCCCccccccccccccccccCCCccccccccCCcchHHHhhc--cchHHHHHHHHHHhhhcccCCCCCCCc
Q 001030 252 ILNWDFQFDTSGRKISINVFSAGVRTETSSSKRSECIIVQPGPAWCDALIS--SGHIVWLLNLYSALRQKFSSEGYWLDC 329 (1183)
Q Consensus 252 ~Lsw~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~W~~~l~~--~~~l~llf~~~~~~~~~~~~~~~~~~~ 329 (1183)
+++|...+. +.+ ..+++++|.++. ++
T Consensus 234 ~l~Wi~~~~---------------------------------------i~~~~~~ll~~l~~~l~-------------~~ 261 (1204)
T 3a6p_A 234 YIDWVSMSH---------------------------------------ITAENCKLLEILCLLLN-------------EQ 261 (1204)
T ss_dssp TTTTSCHHH---------------------------------------HHTTTSHHHHHHHHGGG-------------CT
T ss_pred HHhccCHHH---------------------------------------HHhccchHHHHHHHHcC-------------CH
Confidence 999987544 222 247787774432 26
Q ss_pred hhHHHHHHHHHHHHhcccCcccCCChhhHHHHHHH----HHHhhhhhcCChhhHHHHhhhCCChhhHHHHHHHHHHHHhh
Q 001030 330 PIAVSARKLIVQLCSLTGTVFPSDNGKMQEHHLLQ----LLSGILEWVDPPDVVAQAIESGKSESEMLDGCRALLSIATV 405 (1183)
Q Consensus 330 ~l~~~~l~cL~qLasl~~~~f~~~~~~~r~~~l~~----~l~~~~~il~~~~~~~~~~~~g~~~~~~~~~cr~l~~L~~~ 405 (1183)
+++..|++||+++++.+.+ + + .+..++.. .+.++...... . ...+. .+...++++.+.++...
T Consensus 262 ~lr~~A~ecL~~i~s~~~~--~--~--~~~~li~~l~~~~l~~l~~~~~~----~--~~~~~-~e~d~e~~k~l~~ll~~ 328 (1204)
T 3a6p_A 262 ELQLGAAECLLIAVSRKGK--L--E--DRKPLMVLFGDVAMHYILSAAQT----A--DGGGL-VEKHYVFLKRLCQVLCA 328 (1204)
T ss_dssp TTHHHHHHHHHHHHTCCSC--H--H--HHGGGGGGGSHHHHHHHHHHHHT----C--CCCSC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCC--h--h--hHHHHHHHHhhHHHHHHHHHhhc----C--CCCCC-ccHHHHHHHHHHHHHHH
Confidence 7899999999999997653 1 1 12212211 11122111100 0 00112 23344555555555433
Q ss_pred cChhhHHhhhhcc---CcchhHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhcccccCCCCCCChhhhh
Q 001030 406 TTPFVFDRLLKSI---RPFGTLTLLSNLMCEVVKVLMMNNTEEGTWSWEARDILLDTWTTLLVSLDSTGRNVVLPLEVRN 482 (1183)
Q Consensus 406 ~~~~~l~~~~~~~---~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~es~~~lL~~W~~l~~~~~~~~~~~~~~~~~~~ 482 (1183)
..- .+..++... .....+..+ ...+-.++.. . ..+.....+++|..++.+... .....+..
T Consensus 329 lg~-~l~~l~~~~~~~~~~~~l~~~----l~~lL~~t~~--~----~~~vs~~~l~fW~~ll~~~~~-----~~~~~~~~ 392 (1204)
T 3a6p_A 329 LGN-QLCALLGADSDVETPSNFGKY----LESFLAFTTH--P----SQFLRSSTQMTWGALFRHEIL-----SRDPLLLA 392 (1204)
T ss_dssp HHH-HHHHHHHTCSSCCCCTTHHHH----HHHHHHHHTS--S----CHHHHHHHHHHHHHHHSCTTT-----TTCHHHHH
T ss_pred HHH-HHHHHHhccccccChhHHHHH----HHHHHHHHhC--c----cHHhHHHHHHHHHHHHhcccc-----cccHHHHH
Confidence 211 122211100 001111111 1111112211 1 256778889999998875321 11122223
Q ss_pred hHHHHHHHHH--hccccccccccc-------CCCCccchhhcc-HHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Q 001030 483 AAASLFALIV--ESELKVASASAM-------DDNGEFNYLQAS-ISAMDERLSSYALIARAAIDATVPLLTRLFSERFAR 552 (1183)
Q Consensus 483 ~~~~I~~~yi--~srl~~~~~~~~-------~e~d~~e~~~~d-~~~~~eqLe~i~~L~R~~~~~t~~~L~~ll~~~~~~ 552 (1183)
+..++..... ..||+.|+.... +|.|++++.++. ....++..+.+-.+++..|..+..++.+.+.+....
T Consensus 393 ~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~ 472 (1204)
T 3a6p_A 393 IIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLST 472 (1204)
T ss_dssp HHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh
Confidence 4455554441 246766653210 011111111111 234467788889999999999998888888765432
Q ss_pred Hhccc-C------------C-CCcchhHHHHHHHHHHHHhHhccCCCC-CccCChhhhhhhhhhhhcccCchHHHHHHHH
Q 001030 553 LHQGR-G------------M-IDPTETLEELYSLLLITGHVLADEGEG-EIPVVPNAIQTHFVDTIEAAKHPVVLLCGSI 617 (1183)
Q Consensus 553 l~~~~-~------------~-~~~~~~~E~L~Wli~i~g~~l~d~~~g-e~~~iP~~i~~~~~~~~~~~~~~vv~Li~~l 617 (1183)
..... + . ...+..|....-.+...++++.+-.++ |.+-.|. .+...+
T Consensus 473 ~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~------------------~~~~~L 534 (1204)
T 3a6p_A 473 FLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPV------------------NDGIEL 534 (1204)
T ss_dssp C-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCH------------------HHHHHH
T ss_pred hhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccH------------------HHHHHH
Confidence 11000 0 0 000112222222333444443211000 0000110 123334
Q ss_pred HHHHhhhcCcccccccCCHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCccccchhhHhHHHHhhcCCCCchhH
Q 001030 618 IKFAEWSLDPEARASVFSPRLMEAIVWFLARWSQTYLMPLEEFRDSSTNLCHDTGYQHQSSTSRKALLSFFGEHNQGKPV 697 (1183)
Q Consensus 618 l~l~~~~l~~~~~~~~~Sp~l~~~~l~fl~~~~~~YL~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~f~~~~~g~~~ 697 (1183)
+..+-. + +. -.|.+..+.+.++++|.. |+. . + ..++..+...++..+.....+.
T Consensus 535 l~~ll~-~--~~----~~p~l~~~~i~~l~~l~~-~~~---~-~------------p~~L~~vL~~ll~~l~~~~~~~-- 588 (1204)
T 3a6p_A 535 LQMVLN-F--DT----KDPLILSCVLTNVSALFP-FVT---Y-R------------PEFLPQVFSKLFSSVTFETVEE-- 588 (1204)
T ss_dssp HHHHHH-C--CC----SCHHHHHHHHHHHHHHGG-GGG---T-C------------GGGHHHHHHHHHHHHHCCTTCS--
T ss_pred HHHHHh-C--CC----CChHHHHHHHHHHHHHHH-HHh---c-C------------chHHHHHHHHHHHhhccCCccc--
Confidence 433210 0 11 257788888888888863 663 1 1 1222333333333332110000
Q ss_pred HHHHHHHHHhhccCCC-CchhHHHHHHHHHHHHHhhccccchhhhcchhHHHHHHHhhcchhhhc-ccchhhHHHHHHHH
Q 001030 698 LDIIVRISMTTLVSYP-GEKDLQELTCNQLLHALVRRKNVCVHLVALGSWRELASAFANDKTLIL-LNSTNQRSLAQTLV 775 (1183)
Q Consensus 698 l~~ll~~~~~~L~~~~-~e~~v~~~~~~~LL~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~l~~~l~ 775 (1183)
.-..++ +..++...++ ..|..|+.... ..| .|.+..|.+.+..-..-.. ++.+-+..||++++
T Consensus 589 ----------~~~~~~~~~k~vr~~a~-~al~~L~~~~~--~~L--~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~ 653 (1204)
T 3a6p_A 589 ----------SKAPRTRAVRNVRRHAC-SSIIKMCRDYP--QLV--LPNFDMLYNHVKQLLSNELLLTQMEKCALMEALV 653 (1204)
T ss_dssp ----------TTSCCCHHHHHHHHHHH-HHHHHHHHHCH--HHH--GGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHH
T ss_pred ----------ccccccHHHHHHHHHHH-HHHHHHHHHhh--HHH--HHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHH
Confidence 000011 1234555555 67776765321 222 3566666554322111113 56667788999998
Q ss_pred HHHhcCCCcccchHHHHHHHHHHHHHHHH
Q 001030 776 LSAYGMRNSESSNQYVRDLTRHATAYLVE 804 (1183)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~m~pl~~~~~~ 804 (1183)
.++....+.+....|++.++.|+.++|..
T Consensus 654 ~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 654 LISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 87433345566677799999999998873
No 8
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=99.88 E-value=2.6e-22 Score=219.93 Aligned_cols=284 Identities=15% Similarity=0.201 Sum_probs=217.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHhhccccccccc----hhhhHHHHHHHHHHHhhhcccCc--------------
Q 001030 854 MNPVLLLLEVYKHESAVVYLLLKFVVDWVDGQISYLEVQ----ETNIVIDFCTRLLQLYSSHNIGK-------------- 915 (1183)
Q Consensus 854 ~~~~~~ll~~y~~~~~v~~~iL~~~~e~v~~~~~~l~~~----~~~~lf~~~~~ll~~y~~~~~~~-------------- 915 (1183)
..++.+++++|+.+++.+. +.|...+...... ..+.+.|++++++++|.+.....
T Consensus 5 ~~iy~dml~lY~~~S~~Is-------~~va~~G~~~~k~~~vr~lR~vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~ 77 (321)
T 1w9c_A 5 GRIYLDMLNVYKCLSENIS-------AAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDA 77 (321)
T ss_dssp GGGHHHHHHHHHHHHHHHH-------HHHHHHCSGGGGSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4678899999999998765 5565555554442 25889999999999998764321
Q ss_pred ccccccccccccchhhhhhhHHHHHHHHHHhhcCCCcccCCccccccccchhHHHHHhhhccccccccccccchhhhHHH
Q 001030 916 MLMTQSSCLLGEAKTEKYKDLRALFQLLSNLCSKDLVDFSSDSIEAQAINISQVVFFGLHIVTPLMSGDLLKYPKLCHDY 995 (1183)
Q Consensus 916 ~~~~~~~~~~~~~~~e~~k~l~~~l~lL~~~l~~~~~~f~~~~~~d~~~~~~~v~~~~l~~~iPli~~dll~yPkl~~~f 995 (1183)
+..||+.+.+...++|.+..+..+++-+.+.+.+.. ..+.+ ..++|++.||++|+.+||+||.+|
T Consensus 78 VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~v------------p~Il~---~VFe~TL~MI~~df~eyPehR~~F 142 (321)
T 1w9c_A 78 VLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEI------------PQIFD---AVFECTLNMINKDFEEYPEHRTNF 142 (321)
T ss_dssp HHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGH------------HHHHH---HHHHHHHHHHSSTTTCSHHHHHHH
T ss_pred HHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhH------------HHHHH---HHHHHHHHHHhcccccChHHHHHH
Confidence 136677777888888888888888877766655442 33444 455999999999999999999999
Q ss_pred HHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccch-------h---h
Q 001030 996 FSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLA-------A---Q 1065 (1183)
Q Consensus 996 f~Ll~~l~~~~~~~l~~L~~~~f~~ll~sl~~Gl~~~d~~I~~~~l~~l~~L~~~~~~~~~~~~~~~~-------~---~ 1065 (1183)
|+||+.+++.|+..+.++|+++|+.+++|+.||++|.+++|+..|++++..|...+.+.......++. . .
T Consensus 143 f~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~ 222 (321)
T 1w9c_A 143 FLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFS 222 (321)
T ss_dssp HHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888642111112222 1 1
Q ss_pred hhc-cCCCCC-CCchhHHHHHHHHHHHHHHhccCCCchhHHHhhhHHHHHhcCHHHHHHHHHHHHHcC-CCchhHHHHHH
Q 001030 1066 AAG-INNSNG-NPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQ-ANPPFKSRLAN 1142 (1183)
Q Consensus 1066 ~~~-~~~~~~-~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~~~~~~f~~~~~~li~~q-~~~~~~~~l~~ 1142 (1183)
++| ..|+++ +.|..+|.++++++.+..+..++.. . + | -.|..+.++++.+++.+. | --.++++..
T Consensus 223 VlTDs~Hk~gF~~q~~iL~~lf~~ve~~~i~~pl~~----~-~-~-----~~n~~~v~~~l~~lL~~~Fp-~l~~~qi~~ 290 (321)
T 1w9c_A 223 VVTDTSHTAGLTMHASILAYMFNLVEEGKISTSLNP----G-N-P-----VNNQIFLQEYVANLLKSAFP-HLQDAQVKL 290 (321)
T ss_dssp HHHSSSCCTTHHHHHHHHHHHHHHHHTTCCCSCSCS----S-S-C-----CCHHHHHHHHHHHHHHHHCT-TSCHHHHHH
T ss_pred HHhCchhhccHHHHHHHHHHHHHHHHcCccccccCC----C-C-C-----cccHHHHHHHHHHHHHHhCC-CCCHHHHHH
Confidence 455 788875 6667777777777776533333311 1 1 1 046778999999999776 5 366788999
Q ss_pred HHHHhhcCCCCCCCcChhhHHHHHHHHHHHHHHhhhc
Q 001030 1143 ALQSLTSSNQLSSSLDRVNYQRFRKNLTNFLIEVRGF 1179 (1183)
Q Consensus 1143 ~F~~L~~~~~~~~~l~~~nr~~F~~~l~~F~~~vr~~ 1179 (1183)
....|++. .++..+|+.+++||+.++|+|
T Consensus 291 fv~glf~~--------~~d~~~Fk~~lrDFLIqiKEf 319 (321)
T 1w9c_A 291 FVTGLFSL--------NQDIPAFKEHLRDFLVQIKEF 319 (321)
T ss_dssp HHHHHHHT--------TTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHc--------cCCHHHHHHHHHHHHHHHHHh
Confidence 99999873 367889999999999999987
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.81 E-value=2.9e-15 Score=194.41 Aligned_cols=152 Identities=13% Similarity=0.149 Sum_probs=128.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhCCCC--HHHHHHHHHhhhcCCCcHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhccC
Q 001030 22 PADLAKLQSIMHSIEIACSSIQMHVN--PAAAEATILGLCQSPQPYKACQFILE--NSQVANARFQAAAAIRDAAMREWS 97 (1183)
Q Consensus 22 ~~d~~~l~~~~~~le~~~~~l~~~~~--r~~Ae~~L~~f~~~~~~~~~~~~iL~--~S~~~~~~f~a~~~L~~~i~~~W~ 97 (1183)
.+|.+.++.+.+.| +..++|.+ |++||+.|.+++++|+.+..+..|+. .+.++.++++|+..|++.+.++|.
T Consensus 6 ~~~~~~~~~l~~~l----~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~ 81 (852)
T 4fdd_A 6 KPDEQGLQQILQLL----KESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQ 81 (852)
T ss_dssp CCCHHHHHHHHHHH----HHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGG
T ss_pred CCChhhHHHHHHHH----HHHhCcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccC
Confidence 35556664444444 44466643 79999999999999999999999998 578889999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccCCChhhHHHHHHHH
Q 001030 98 FLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFL 177 (1183)
Q Consensus 98 ~l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL 177 (1183)
.+++++|..||+.+++.+. +.++.||+++..+++.|++.+|++ .|+++++.+.+.+.+ +++..+..++..|
T Consensus 82 ~~~~~~~~~ik~~ll~~l~----~~~~~vr~~~a~~i~~ia~~~~~~----~wp~ll~~L~~~l~~-~~~~~r~~al~~L 152 (852)
T 4fdd_A 82 NFPNGVTDFIKSECLNNIG----DSSPLIRATVGILITTIASKGELQ----NWPDLLPKLCSLLDS-EDYNTCEGAFGAL 152 (852)
T ss_dssp GCCHHHHHHHHHHHHTTTT----CSSHHHHHHHHHHHHHHHHHTTTT----TCTTHHHHHHHHHSC-SSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHhcCcc----ccHHHHHHHHHHHcC-CCHHHHHHHHHHH
Confidence 9999999999999999753 346799999999999999998765 688999999999875 4677888999999
Q ss_pred HHHHhhhCC
Q 001030 178 ESLVSEFSP 186 (1183)
Q Consensus 178 ~~lv~E~s~ 186 (1183)
..+.+++..
T Consensus 153 ~~i~~~~~~ 161 (852)
T 4fdd_A 153 QKICEDSAE 161 (852)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhHH
Confidence 999988754
No 10
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.64 E-value=4.4e-10 Score=147.38 Aligned_cols=143 Identities=10% Similarity=0.143 Sum_probs=121.5
Q ss_pred HHHHHHHHhhCCCC-HHHHHHHHHhhhcCCCcHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhccC------cCCHHHHH
Q 001030 34 SIEIACSSIQMHVN-PAAAEATILGLCQSPQPYKACQFILENS-QVANARFQAAAAIRDAAMREWS------FLTADEKK 105 (1183)
Q Consensus 34 ~le~~~~~l~~~~~-r~~Ae~~L~~f~~~~~~~~~~~~iL~~S-~~~~~~f~a~~~L~~~i~~~W~------~l~~~~k~ 105 (1183)
++.++.+...+|.+ .+ ||++|.+++++|+.|..+..|+.+. .+..++++|+..||+.|.++|. .+++++|.
T Consensus 6 ~l~~~L~~~~spd~~~r-Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~ 84 (960)
T 1wa5_C 6 TVAKFLAESVIASTAKT-SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVE 84 (960)
T ss_dssp HHHHHHHHTTSGGGHHH-HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHH-HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHH
Confidence 34444444456543 34 9999999999999999999998654 5579999999999999999998 89999999
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhC
Q 001030 106 SLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFS 185 (1183)
Q Consensus 106 ~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~lv~E~s 185 (1183)
.||+.+++.+... ++.|+++++.+++.|++.+||+ +|+++++.+.+.+.+ +++.+...++.+|..++.++.
T Consensus 85 ~ik~~ll~~l~~~----~~~ir~~l~~~ia~ia~~d~p~----~Wp~ll~~L~~~l~s-~~~~~~~~aL~~l~~i~~~~~ 155 (960)
T 1wa5_C 85 LIKKEIVPLMISL----PNNLQVQIGEAISSIADSDFPD----RWPTLLSDLASRLSN-DDMVTNKGVLTVAHSIFKRWR 155 (960)
T ss_dssp HHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHTTCCS-SCTTHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHhhCcc----chhHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 9999999998863 4899999999999999999986 699999999999875 466788899999999988775
Q ss_pred C
Q 001030 186 P 186 (1183)
Q Consensus 186 ~ 186 (1183)
.
T Consensus 156 ~ 156 (960)
T 1wa5_C 156 P 156 (960)
T ss_dssp T
T ss_pred H
Confidence 4
No 11
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.55 E-value=6.5e-10 Score=144.13 Aligned_cols=188 Identities=12% Similarity=0.056 Sum_probs=141.6
Q ss_pred HHHHHHHh-hCCCC--HHHHHHHHHhhhcC--CCcHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhc-----------cC
Q 001030 35 IEIACSSI-QMHVN--PAAAEATILGLCQS--PQPYKACQFILENS-QVANARFQAAAAIRDAAMRE-----------WS 97 (1183)
Q Consensus 35 le~~~~~l-~~~~~--r~~Ae~~L~~f~~~--~~~~~~~~~iL~~S-~~~~~~f~a~~~L~~~i~~~-----------W~ 97 (1183)
+.++.+.. ++|.+ |++|++.|.+++++ |+.|..+..+|.++ .++.++++|+..|++.+.++ |.
T Consensus 6 l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~ 85 (861)
T 2bpt_A 6 FAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWI 85 (861)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHcccCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHh
Confidence 34444445 56543 79999999999986 88999999999876 57899999999999998765 57
Q ss_pred c-CCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccCCChhhHHHHHHH
Q 001030 98 F-LTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINF 176 (1183)
Q Consensus 98 ~-l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 176 (1183)
. +++++|..||+.+++.+.+ .++.+|++++.+++.|.+..|+.. .|++++..+.+.+.+..++..+..++.+
T Consensus 86 ~~l~~~~~~~ik~~ll~~l~~----~~~~vr~~~~~~l~~i~~~~~p~~---~w~~ll~~L~~~l~~~~~~~~r~~al~~ 158 (861)
T 2bpt_A 86 TQVSPEAKNQIKTNALTALVS----IEPRIANAAAQLIAAIADIELPHG---AWPELMKIMVDNTGAEQPENVKRASLLA 158 (861)
T ss_dssp HHSCHHHHHHHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHHGGGT---CCHHHHHHHHHHTSTTSCHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHHCC----CchHHHHHHHHHHHHHHHhhCccc---ccHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 5 9999999999999997643 357889999999999999999852 6999999999998752267788899999
Q ss_pred HHHHHhhhCCCCcCCCCCcHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHccc
Q 001030 177 LESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNW 255 (1183)
Q Consensus 177 L~~lv~E~s~~~ss~~~l~~~~h~k~~~~F~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw 255 (1183)
+..+.+++... .. .+.. ....|+......+... ..+..+-..+++++..++.|
T Consensus 159 l~~l~~~~~~~----~~-----------~~~~-~~~~ll~~l~~~l~~~----------~~~~~vr~~al~~l~~~~~~ 211 (861)
T 2bpt_A 159 LGYMCESADPQ----SQ-----------ALVS-SSNNILIAIVQGAQST----------ETSKAVRLAALNALADSLIF 211 (861)
T ss_dssp HHHHHHTSSTT----SS-----------TTGG-GHHHHHHHHHHHHSTT----------CCCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHcCChh----hh-----------HHHH-HHHHHHHHHHHhhcCC----------CCCHHHHHHHHHHHHHHHHH
Confidence 99999987543 10 1222 3555555444433210 01345667888998888765
No 12
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.28 E-value=1.6e-06 Score=112.30 Aligned_cols=183 Identities=13% Similarity=0.076 Sum_probs=134.9
Q ss_pred HHHHHhhCCCC--HHHHHHHHHhhhcC--CCcHHHHHHHHhcC-CchhHHHHHHHHHHHHHh-----------hccCcCC
Q 001030 37 IACSSIQMHVN--PAAAEATILGLCQS--PQPYKACQFILENS-QVANARFQAAAAIRDAAM-----------REWSFLT 100 (1183)
Q Consensus 37 ~~~~~l~~~~~--r~~Ae~~L~~f~~~--~~~~~~~~~iL~~S-~~~~~~f~a~~~L~~~i~-----------~~W~~l~ 100 (1183)
++.+.+++|.+ |++|++.|.+++++ |+.|..+..+|.++ .++.++.+|+.+|++.+. ++|..++
T Consensus 5 ~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~ 84 (876)
T 1qgr_A 5 TILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAID 84 (876)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCC
Confidence 33444466543 79999999999987 88899888888775 568999999999999874 6799999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccCC-ChhhHHHHHHHHHH
Q 001030 101 ADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIH-GVDTQFIGINFLES 179 (1183)
Q Consensus 101 ~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~lL~~ 179 (1183)
++.|..||+.+++.+.+. +..+ ++++++++.|++..|+. .+|+++++.+.+.+.+.. ++..+..++..|..
T Consensus 85 ~~~~~~ik~~ll~~l~~~----~~~~-~~~~~~l~~i~~~~~~~---~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~ 156 (876)
T 1qgr_A 85 ANARREVKNYVLHTLGTE----TYRP-SSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKESTLEAIGY 156 (876)
T ss_dssp HHHHHHHHHHHHHHTTTC----CSSS-CHHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC----cHHH-HHHHHHHHHHHHhhCcc---cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 999999999999976432 3445 89999999999998874 268899999999887521 66788899999999
Q ss_pred HHhhhCCCCcCCCCCcHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHccc
Q 001030 180 LVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNW 255 (1183)
Q Consensus 180 lv~E~s~~~ss~~~l~~~~h~k~~~~F~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw 255 (1183)
++.++... .|.. .+..++......+..- + +...+-..+++++..++.+
T Consensus 157 l~~~~~~~-----------------~~~~-~~~~ll~~l~~~l~~~-----~-----~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 157 ICQDIDPE-----------------QLQD-KSNEILTAIIQGMRKE-----E-----PSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp HHHHSCHH-----------------HHGG-GHHHHHHHHHHHHSTT-----C-----SCHHHHHHHHHHHHHHGGG
T ss_pred HHHhcCHh-----------------hHHh-HHHHHHHHHHHhhcCC-----C-----CCHHHHHHHHHHHHHHHHH
Confidence 99876321 1333 3566655544443210 0 0234556788888877754
No 13
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.98 E-value=7.2e-08 Score=114.98 Aligned_cols=184 Identities=13% Similarity=0.059 Sum_probs=138.4
Q ss_pred HHHHHHHhhCCCC--HHHHHHHHHhhhc--CCCcHHHHHHHHhcCC-chhHHHHHHHHHHHHHhhc-----------cCc
Q 001030 35 IEIACSSIQMHVN--PAAAEATILGLCQ--SPQPYKACQFILENSQ-VANARFQAAAAIRDAAMRE-----------WSF 98 (1183)
Q Consensus 35 le~~~~~l~~~~~--r~~Ae~~L~~f~~--~~~~~~~~~~iL~~S~-~~~~~f~a~~~L~~~i~~~-----------W~~ 98 (1183)
|.++...+++|.+ |++||+.|.++++ .|+.|..+..+|.+++ ++.++.+|+..|++.+.++ |..
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~ 82 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhc
Confidence 3444455566543 7999999999998 5889999999998874 6899999999999999776 688
Q ss_pred CCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhccCC--ChhhHHHHHHH
Q 001030 99 LTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVLGIH--GVDTQFIGINF 176 (1183)
Q Consensus 99 l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~l 176 (1183)
+++++|..||+.+++.+... +..+ ++++.+++.|.+..|++. .|+++++.+.+.+.+ + ++..+..++.+
T Consensus 83 l~~~~~~~ik~~ll~~l~~~----~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~-~~~~~~~r~~al~~ 153 (462)
T 1ibr_B 83 IDANARREVKNYVLQTLGTE----TYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTN-PNSTEHMKESTLEA 153 (462)
T ss_dssp SCHHHHHHHHHHHHHHTTCC----CSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHC-TTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCC----Cchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhcc-CCCCHHHHHHHHHH
Confidence 99999999999999976542 3456 899999999999999862 688999999998875 4 67788999999
Q ss_pred HHHHHhhhCCCCcCCCCCcHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHccc
Q 001030 177 LESLVSEFSPSTSSAMGLPREFHEQCRISLELDYLKTFYCWARDAALSVTKQIIESDAAASEVKACTAALRLLHQILNW 255 (1183)
Q Consensus 177 L~~lv~E~s~~~ss~~~l~~~~h~k~~~~F~~~~L~~if~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~L~l~~~~Lsw 255 (1183)
|..+++++... . + ...+..++...+..|... .++..+-..+++++..++.+
T Consensus 154 l~~l~~~~~~~-----~------------~-~~~~~~ll~~l~~~l~~~----------~~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 154 IGYICQDIDPE-----Q------------L-QDKSNEILTAIIQGMRKE----------EPSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp HHHHHHHSCGG-----G------------T-GGGHHHHHHHHHHHHSTT----------CCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCch-----h------------h-HhHHHHHHHHHHHHhCCC----------CCCHHHHHHHHHHHHHHHHH
Confidence 99999887432 0 1 123455555544444211 00234667788888887743
No 14
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=90.18 E-value=48 Score=41.85 Aligned_cols=137 Identities=15% Similarity=0.131 Sum_probs=84.5
Q ss_pred cchhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchhhh
Q 001030 987 KYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQA 1066 (1183)
Q Consensus 987 ~yPkl~~~ff~Ll~~l~~~~~~~l~~L~~~~f~~ll~sl~~Gl~~~d~~I~~~~l~~l~~L~~~~~~~~~~~~~~~~~~~ 1066 (1183)
..|+++...|.++..+++.++..+.. .+..++..+..++...+.++...++.++..++..+..+. .
T Consensus 641 ~~~~vr~~a~~~l~~l~~~~~~~~~~----~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~-------~--- 706 (852)
T 4fdd_A 641 KMPEVRQSSFALLGDLTKACFQHVKP----CIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEM-------Q--- 706 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTGG----GHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGG-------G---
T ss_pred CChhHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhH-------H---
Confidence 45899999999999999998877642 355677778888888889999999999999987663221 1
Q ss_pred hccCCCCCCCchhHHHHHHHHHHHHHHhccCCCchhHHHhhhHHHHHhcCHHHH----HHHHHHHHHcC---CCchhHHH
Q 001030 1067 AGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLY----QRLGSELIERQ---ANPPFKSR 1139 (1183)
Q Consensus 1067 ~~~~~~~~~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~~~~~~f----~~~~~~li~~q---~~~~~~~~ 1139 (1183)
.....++..++..+-..+.+....+.+..++--|...+|+.. .+++..+++.- .|...+..
T Consensus 707 ------------p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~ 774 (852)
T 4fdd_A 707 ------------PYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDS 774 (852)
T ss_dssp ------------GGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHH
T ss_pred ------------HHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHH
Confidence 112233333343221112333455666677777766666543 34444443322 23344555
Q ss_pred HHHHHHHhhc
Q 001030 1140 LANALQSLTS 1149 (1183)
Q Consensus 1140 l~~~F~~L~~ 1149 (1183)
.-..|..+..
T Consensus 775 a~~~l~~li~ 784 (852)
T 4fdd_A 775 AFRGICTMIS 784 (852)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555655554
No 15
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=89.36 E-value=7.8 Score=51.53 Aligned_cols=144 Identities=9% Similarity=0.028 Sum_probs=94.9
Q ss_pred HHHHHHHhhCCCC--HHHHHHHHHhhhcCC------C----cHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCcCCHH
Q 001030 35 IEIACSSIQMHVN--PAAAEATILGLCQSP------Q----PYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTAD 102 (1183)
Q Consensus 35 le~~~~~l~~~~~--r~~Ae~~L~~f~~~~------~----~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~ 102 (1183)
|..+.+.+.+|.+ |.+|..-|.+.-+.+ . -.+.+...|. ++++.++..|+.+|...+.. ++++
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~----~~~~ 82 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSK----VKEY 82 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTT----SCHH
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHh----CCHH
Confidence 3334444455532 788887777655433 1 1233344444 67899999999999888754 6777
Q ss_pred HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccCC-----CCCChhHHHHHHHHHhccCCChhhHHHHHHHH
Q 001030 103 EKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDF-----TSSDKEAFFSQVHQAVLGIHGVDTQFIGINFL 177 (1183)
Q Consensus 103 ~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL 177 (1183)
.+..+++.+++-+. +....||...+.+++.|...-.++. ....|+.+++.+.+.+...+++..+.-++.+|
T Consensus 83 ~~~~i~~~Ll~~l~----d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l 158 (1230)
T 1u6g_C 83 QVETIVDTLCTNML----SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIM 158 (1230)
T ss_dssp HHHHHHHHHHHHTT----CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 77766666666532 3456789999999999987655431 01136778888888776224567888999999
Q ss_pred HHHHhhhCCC
Q 001030 178 ESLVSEFSPS 187 (1183)
Q Consensus 178 ~~lv~E~s~~ 187 (1183)
..++..+...
T Consensus 159 ~~~~~~~~~~ 168 (1230)
T 1u6g_C 159 ADMLSRQGGL 168 (1230)
T ss_dssp HHHHHHTCSS
T ss_pred HHHHHHhHhH
Confidence 9999877543
No 16
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=71.37 E-value=2.1e+02 Score=35.62 Aligned_cols=112 Identities=9% Similarity=0.037 Sum_probs=67.8
Q ss_pred hhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhcc
Q 001030 990 KLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGI 1069 (1183)
Q Consensus 990 kl~~~ff~Ll~~l~~~~~~~l~~L~~~~f~~ll~sl~~Gl~~~d~~I~~~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~ 1069 (1183)
.++...+..+..+++...+.+. ..+..++..+..++++.+.++...++..+..++..+... +
T Consensus 613 ~v~~~~~~~l~~l~~~~~~~~~----~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~-------~------- 674 (861)
T 2bpt_A 613 FIEDDVFYAISALAASLGKGFE----KYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED-------F------- 674 (861)
T ss_dssp GTHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGG-------G-------
T ss_pred cHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchh-------c-------
Confidence 6888888999888876555442 345667777777788888889999999988887654211 0
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhccCCCchhHHHhhhHHHHHhcCHHHHHHHHHHH
Q 001030 1070 NNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSEL 1127 (1183)
Q Consensus 1070 ~~~~~~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~~~~~~f~~~~~~l 1127 (1183)
...+..++..+++.+-..+.+.+....+..++-.++...++.|..|+..+
T Consensus 675 --------~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~ 724 (861)
T 2bpt_A 675 --------RRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDI 724 (861)
T ss_dssp --------HHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred --------cchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 12344555555554322223344444555555555544344444444443
No 17
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=63.53 E-value=60 Score=36.18 Aligned_cols=109 Identities=12% Similarity=0.038 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHhhhcCCCc-HHHHHH----HHhcCCchhHHHHHHHHHHHHHhhccCcCCHHHHH
Q 001030 31 IMHSIEIACSSIQMHVNPAAAEATILGLCQSPQP-YKACQF----ILENSQVANARFQAAAAIRDAAMREWSFLTADEKK 105 (1183)
Q Consensus 31 ~~~~le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~-~~~~~~----iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~ 105 (1183)
+...+..+.+.++++.|.++|.+-+.++.. |.- ...+.. .|+++ +.-.+=..+..|.++... +.++.+|-.
T Consensus 216 lkkki~~lL~EY~~s~D~~EA~~ci~EL~~-p~fhhe~V~~av~~aLE~~-~~~~re~~~~LL~~L~~~--glls~~q~~ 291 (358)
T 3eiq_C 216 LVKEIDMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIVMVLEST-GESAFKMILDLLKSLWKS--STITIDQMK 291 (358)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHCC-TTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHT--TCSCHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHccC-CcchHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHC--CCCCHHHHH
Confidence 345677777788888889999999999985 443 234433 34554 333455556777777765 467776643
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccC
Q 001030 106 SLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLD 144 (1183)
Q Consensus 106 ~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~ 144 (1183)
.=-.-+++.+-...-+. +.+...+.+.+++.++.+|..
T Consensus 292 ~Gf~~vl~~ldDl~lDi-P~A~~~la~~varai~~g~l~ 329 (358)
T 3eiq_C 292 RGYERIYNEIPDINLDV-PHSYSVLERFVEECFQAGIIS 329 (358)
T ss_dssp HHHHHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHhccHhhccc-ccHHHHHHHHHHHHHHCCCCC
Confidence 32223334333322122 455667788889999999977
No 18
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=62.54 E-value=1.1e+02 Score=29.71 Aligned_cols=121 Identities=14% Similarity=0.144 Sum_probs=66.8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhhcCCCcHHHH-HHHHh--cCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHH--
Q 001030 33 HSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKAC-QFILE--NSQVANARFQAAAAIRDAAMREWSFLTADEKKSL-- 107 (1183)
Q Consensus 33 ~~le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~~~~-~~iL~--~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~l-- 107 (1183)
+.+|+|+...+..+|-...-++-...+..+..-..+ +.|-. +++|+.++++|+.+|+.++.++=..+ ..++
T Consensus 18 ~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~F----h~evas 93 (163)
T 1x5b_A 18 QDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIF----HLEVCS 93 (163)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHH----HHHHTS
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH----HHHHhh
Confidence 447888655544456444455555555555544433 33321 46899999999999999999974322 2111
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCC-hhHHHHHHHHHhc
Q 001030 108 IGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSD-KEAFFSQVHQAVL 162 (1183)
Q Consensus 108 r~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~-~~~~~~~~~~~~~ 162 (1183)
|.|+=+++.-..+..+.-|++++..++ ++|.+..+.. .-..+.++-+.++
T Consensus 94 ~~Fl~el~~l~~~~~~~~Vk~kil~li-----~~W~~~f~~~~~l~~i~~~Y~~Lk 144 (163)
T 1x5b_A 94 RDFATEVRAVIKNKAHPKVCEKLKSLM-----VEWSEEFQKDPQFSLISATIKSMK 144 (163)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH-----HHHHHHTTTCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHH-----HHHHHHhcCCcccHHHHHHHHHHH
Confidence 344433211111234567888887644 4565432211 1245566666554
No 19
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=57.32 E-value=1.9e+02 Score=30.41 Aligned_cols=107 Identities=14% Similarity=-0.011 Sum_probs=68.6
Q ss_pred cCCchhHHHHHHHHHHHHHhhccCc-CCHHHHHHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHHHHhcccCCCCCChh
Q 001030 74 NSQVANARFQAAAAIRDAAMREWSF-LTADEKKSLIGFCLCFVMQHA-SSPEGYVQAKISSVAAQLMKRGWLDFTSSDKE 151 (1183)
Q Consensus 74 ~S~~~~~~f~a~~~L~~~i~~~W~~-l~~~~k~~lr~~ll~~l~~~~-~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~ 151 (1183)
..+|..|+--|+.++...+..-=.. ............++..+++++ .+.-.-++.+...++..++....+. .
T Consensus 65 ~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~------~ 138 (278)
T 4ffb_C 65 TDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI------T 138 (278)
T ss_dssp TCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS------H
T ss_pred ccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH------H
Confidence 4678888889999998877542100 011122233445566677663 2344667777777776666554332 2
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhCCC
Q 001030 152 AFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSPS 187 (1183)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~l~lL~~lv~E~s~~ 187 (1183)
.+++.+...+.. .+|....-.+.+|..++.+|+..
T Consensus 139 ~~~e~l~~~l~~-Knpkv~~~~l~~l~~~l~~fg~~ 173 (278)
T 4ffb_C 139 QSVELVIPFFEK-KLPKLIAAAANCVYELMAAFGLT 173 (278)
T ss_dssp HHHHHHGGGGGC-SCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHhCCC
Confidence 456666666543 57888899999999999999877
No 20
>2lqh_B Forkhead box O3, FOXO3A; promiscuous binding, intrinsic disorder, transcription; NMR {Homo sapiens} PDB: 2lqi_B
Probab=59.07 E-value=2.7 Score=30.19 Aligned_cols=13 Identities=62% Similarity=1.357 Sum_probs=6.3
Q ss_pred CCCCCCCCCCCCC
Q 001030 11 GGGDDGGGGGGPA 23 (1183)
Q Consensus 11 ~~~~~~~~~~~~~ 23 (1183)
|||.+||.|||..
T Consensus 25 gggsgggsgggsl 37 (52)
T 2lqh_B 25 GGGSGGGSGGGSL 37 (52)
Confidence 3444455555544
No 21
>4fdd_B RNA-binding protein FUS; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens}
Probab=53.36 E-value=5.4 Score=26.14 Aligned_cols=15 Identities=60% Similarity=1.001 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCCCcH
Q 001030 11 GGGDDGGGGGGPADL 25 (1183)
Q Consensus 11 ~~~~~~~~~~~~~d~ 25 (1183)
||||.||-|+|-||.
T Consensus 2 gg~drgG~gpgKM~~ 16 (29)
T 4fdd_B 2 GGGDRGGFGPGKMDS 16 (29)
T ss_pred CccccCCcCCccccc
Confidence 556666657788873
No 22
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=53.28 E-value=1e+02 Score=33.53 Aligned_cols=118 Identities=14% Similarity=0.114 Sum_probs=72.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHhhhcCCCcH-HHHH----HHHhcCCchhHHHHHHHHHHHHHh
Q 001030 19 GGGPADLAKLQSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPY-KACQ----FILENSQVANARFQAAAAIRDAAM 93 (1183)
Q Consensus 19 ~~~~~d~~~l~~~~~~le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~-~~~~----~iL~~S~~~~~~f~a~~~L~~~i~ 93 (1183)
|||.+....+ ...+..+.+.++++.|-++|.+-+.++.. |.-. +.+. ..|+++ +...+=..+..|+++..
T Consensus 156 ~~~~~~~eel---kkki~~lL~EY~~~~D~~EA~~ci~EL~~-p~f~~e~V~~ai~~alE~~-~~~~re~~~~LL~~L~~ 230 (307)
T 2zu6_B 156 GGGQQSVNHL---VKEIDMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIIMVLEST-GESTFKMILDLLKSLWK 230 (307)
T ss_dssp CSTTSCHHHH---HHHHHHHHHHHHHHCCHHHHHHHHHHHCC-GGGHHHHHHHHHHHHHTCC-SSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHH---HHHHHHHHHHHHcCCCHHHHHHHHHHcCC-CcchHHHHHHHHHHHHccC-ChHHHHHHHHHHHHHHH
Confidence 4444444444 46666677788888889999999999985 4332 3333 344544 34455566677877775
Q ss_pred hccCcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccC
Q 001030 94 REWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLD 144 (1183)
Q Consensus 94 ~~W~~l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~ 144 (1183)
. +.++.+|-..=-.-+++.+-...-+. +.+.+.+...+++.+..||..
T Consensus 231 ~--~~ls~~q~~~Gf~~vl~~l~Dl~lDi-P~A~~~la~~v~~ai~~g~l~ 278 (307)
T 2zu6_B 231 S--STITVDQMKRGYERIYNEIPDINLDV-PHSYSVLERFVEECFQAGIIS 278 (307)
T ss_dssp H--CSSCHHHHHHHHHHHHHHHHHHHHHC-TTHHHHHHHHHHHHHHHTSSC
T ss_pred C--CCCCHHHHHHHHHHHHHhccHhhccc-ccHHHHHHHHHHHHHHCCCCC
Confidence 5 46777775432233333333222122 556667778889999999977
No 23
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=49.36 E-value=1.1e+02 Score=29.45 Aligned_cols=99 Identities=12% Similarity=0.037 Sum_probs=60.2
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHhhhcCCCcHHHH-HHHH--hcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHHH
Q 001030 34 SIEIACSSIQMHVNPAAAEATILGLCQSPQPYKAC-QFIL--ENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF 110 (1183)
Q Consensus 34 ~le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~~~~-~~iL--~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ 110 (1183)
.+|.|+...+..+|-...-++-...++.+..-..+ +.|- =+++|+.++.+|+++|+.++.++-..+ ..-..=|.|
T Consensus 15 ~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~f--h~eias~~F 92 (149)
T 3g2s_A 15 RINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRF--HDEVGKFRF 92 (149)
T ss_dssp HHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHH--HHHHTSHHH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHH--HHHHhhHHH
Confidence 37888665555556566666666667666544333 3332 237899999999999999999984332 111222445
Q ss_pred HHHHHHhcc-----CCCchHHHHHHHHHH
Q 001030 111 CLCFVMQHA-----SSPEGYVQAKISSVA 134 (1183)
Q Consensus 111 ll~~l~~~~-----~~~~~~v~~~l~~~~ 134 (1183)
+-+++.-.. ...+.-|++++..++
T Consensus 93 l~eL~kl~~~k~~~~~~~~~Vk~kil~li 121 (149)
T 3g2s_A 93 LNELIKVVSPKYLGSRTSEKVKNKILELL 121 (149)
T ss_dssp HHHHHHHHCTTTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHcccccCCCCCHHHHHHHHHHH
Confidence 544332211 135677888887755
No 24
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=47.78 E-value=1.7e+02 Score=28.89 Aligned_cols=109 Identities=13% Similarity=0.048 Sum_probs=64.8
Q ss_pred CCcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHH-HHHHHHHhccCCCchHHHHHHHHHHHHHHHh
Q 001030 62 PQPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIG-FCLCFVMQHASSPEGYVQAKISSVAAQLMKR 140 (1183)
Q Consensus 62 ~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~-~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~ 140 (1183)
+..++....+|. +.++.++..|+.+|...... +++.+..+.+ -.+..+.+.-.+....++...+.++..+...
T Consensus 11 ~~~~~~l~~LL~-s~~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 84 (210)
T 4db6_A 11 GSELPQMVQQLN-SPDQQELQSALRKLSQIASG-----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84 (210)
T ss_dssp --CHHHHHHHTT-CSCHHHHHHHHHHHHHHHTS-----CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred cchhHHHHHHhc-CCCHHHHHHHHHHHHHHHcC-----CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 455666677774 66889999999999988644 2444443332 2333333322223567888888888777631
Q ss_pred cccCCCCCCh-----hHHHHHHHHHhccCCChhhHHHHHHHHHHHHh
Q 001030 141 GWLDFTSSDK-----EAFFSQVHQAVLGIHGVDTQFIGINFLESLVS 182 (1183)
Q Consensus 141 ~W~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~lL~~lv~ 182 (1183)
. +..+ ...++.+.+.+.. +++..+..++..|..+..
T Consensus 85 ~-----~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~ 125 (210)
T 4db6_A 85 G-----NEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIAS 125 (210)
T ss_dssp C-----HHHHHHHHHTTCHHHHHHHTTC-SCHHHHHHHHHHHHHHTT
T ss_pred C-----cHHHHHHHHCCCHHHHHHHHcC-CcHHHHHHHHHHHHHHHc
Confidence 1 1011 1245566677764 456777788888887763
No 25
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=47.75 E-value=1.6e+02 Score=28.09 Aligned_cols=118 Identities=10% Similarity=0.058 Sum_probs=63.7
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHhhhcCCCcHHHHHHHH---hcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHH--H
Q 001030 34 SIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFIL---ENSQVANARFQAAAAIRDAAMREWSFLTADEKKSL--I 108 (1183)
Q Consensus 34 ~le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL---~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~l--r 108 (1183)
.+|.|+...+..+|-...-++....+..+..-..+...| =+++|+.++.+|+++|+.++.++-. .-..++ |
T Consensus 5 ~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~----~fh~evas~ 80 (148)
T 1mhq_A 5 WLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGE----KFHSEVAKF 80 (148)
T ss_dssp HHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH----HHHHHHTSH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH----HHHHHHhhH
Confidence 356665544444453333344444444443322222222 1478999999999999999999742 222222 5
Q ss_pred HHHHHHHHhcc-----CCCchHHHHHHHHHHHHHHHhcccCCCCCChhHHHHHHHHHhc
Q 001030 109 GFCLCFVMQHA-----SSPEGYVQAKISSVAAQLMKRGWLDFTSSDKEAFFSQVHQAVL 162 (1183)
Q Consensus 109 ~~ll~~l~~~~-----~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~~~~~~~~~~~~~ 162 (1183)
.|+-+++.-.. +..+.-|++++..++ ++|.++.+. .+. +.++-+.++
T Consensus 81 ~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li-----~~W~~~f~~-~p~-i~~~y~~Lk 132 (148)
T 1mhq_A 81 RFLNELIKVLSPKYLGSWATGKVKGRVIEIL-----FSWTVWFPE-DIK-IRDAYQMLK 132 (148)
T ss_dssp HHHHHHHHTTCCSTTSCCCCHHHHHHHHHHH-----HHHHHHCTT-CHH-HHHHHHHHH
T ss_pred HHHHHHHHHHccccCCCCCCHHHHHHHHHHH-----HHHHHHcCC-Cch-HHHHHHHHH
Confidence 56665432211 234678888887654 456543221 123 455555554
No 26
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=47.10 E-value=2.4e+02 Score=28.45 Aligned_cols=122 Identities=12% Similarity=0.105 Sum_probs=74.2
Q ss_pred HHHHHHHHhhhcCC----------CcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHH-HHHHHHHh
Q 001030 49 AAAEATILGLCQSP----------QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIG-FCLCFVMQ 117 (1183)
Q Consensus 49 ~~Ae~~L~~f~~~~----------~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~-~ll~~l~~ 117 (1183)
..|-..|..+.... ..++....+|.. .++.++..|+.+|.+..... ++.+..+.+ -.+..+.+
T Consensus 20 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~~~~~i~~l~~ 93 (252)
T 4hxt_A 20 KEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGP-----DEAIKAIVDAGGVEVLVK 93 (252)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCC-----hHHHHHHHHCCCHHHHHH
Confidence 44555555554333 456667777765 45899999999999886542 444443322 23444444
Q ss_pred ccCCCchHHHHHHHHHHHHHHHhcccCCCCCCh-----hHHHHHHHHHhccCCChhhHHHHHHHHHHHHh
Q 001030 118 HASSPEGYVQAKISSVAAQLMKRGWLDFTSSDK-----EAFFSQVHQAVLGIHGVDTQFIGINFLESLVS 182 (1183)
Q Consensus 118 ~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~lL~~lv~ 182 (1183)
.-.+...-++...+.++..+.... +..+ ...++.+.+.+.. +++..+..++..|..+..
T Consensus 94 ll~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~~~~~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 94 LLTSTDSEVQKEAARALANIASGP-----DEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIAS 157 (252)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCC-----HHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHc
Confidence 332345778888888888876421 1011 1356677777764 456777888888887763
No 27
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=46.06 E-value=43 Score=33.10 Aligned_cols=100 Identities=8% Similarity=-0.058 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhhcCCCcHHHHHHHH---hcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHH
Q 001030 33 HSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFIL---ENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIG 109 (1183)
Q Consensus 33 ~~le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL---~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~ 109 (1183)
+.+|+|+...+..+|-...-++....+..+..-..+...| =+++|+.++.+|+++|+.++.++-..+-.+ ..=|.
T Consensus 16 ~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~e--vas~~ 93 (171)
T 1juq_A 16 SWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNE--VGKFR 93 (171)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHH--HTSHH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHH--HhhHH
Confidence 4477887655555565445555555555555444333223 146899999999999999999974322111 11133
Q ss_pred HHHHHHHhc-----cCCCchHHHHHHHHHH
Q 001030 110 FCLCFVMQH-----ASSPEGYVQAKISSVA 134 (1183)
Q Consensus 110 ~ll~~l~~~-----~~~~~~~v~~~l~~~~ 134 (1183)
|+-+++.-. ++..+.-|++++..++
T Consensus 94 Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 123 (171)
T 1juq_A 94 FLNELIKVVSPKYLGDRVSEKVKTKVIELL 123 (171)
T ss_dssp HHHHHHHHHCCCCCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence 444432211 1234677888877654
No 28
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=45.85 E-value=1.7e+02 Score=27.55 Aligned_cols=95 Identities=15% Similarity=0.040 Sum_probs=54.8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhhcCCCcHHHHHHHH---hcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHH--
Q 001030 33 HSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFIL---ENSQVANARFQAAAAIRDAAMREWSFLTADEKKSL-- 107 (1183)
Q Consensus 33 ~~le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL---~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~l-- 107 (1183)
+.+|+|+...+..+|-...-++-...++.+..-..+...| =+++|+.++..|+++|+.++.++- ..-..++
T Consensus 8 ~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG----~~f~~evas 83 (140)
T 3ldz_A 8 QDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCG----KIFHLEVCS 83 (140)
T ss_dssp HHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC----HHHHHHHSS
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcC----HHHHHHHhh
Confidence 3366665544444554555555555555555443333331 135789999999999999999973 2222223
Q ss_pred HHHHHHH--HHhccCCCchHHHHHHHHHH
Q 001030 108 IGFCLCF--VMQHASSPEGYVQAKISSVA 134 (1183)
Q Consensus 108 r~~ll~~--l~~~~~~~~~~v~~~l~~~~ 134 (1183)
|.|+=+. ++.+ .+.-|++++..++
T Consensus 84 ~~Fl~el~~l~~~---~~~~Vk~kil~li 109 (140)
T 3ldz_A 84 RDFASEVSNVLNK---GHPKVCEKLKALM 109 (140)
T ss_dssp HHHHHHHHHHHHH---SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc---CCHHHHHHHHHHH
Confidence 4444332 2222 3567888877655
No 29
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=39.86 E-value=2.5e+02 Score=28.66 Aligned_cols=132 Identities=20% Similarity=0.247 Sum_probs=83.9
Q ss_pred chhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchhhh
Q 001030 988 YPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGL-HHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQA 1066 (1183)
Q Consensus 988 yPkl~~~ff~Ll~~l~~~~~~~l~~L~~~~f~~ll~sl~~Gl-~~~d~~I~~~~l~~l~~L~~~~~~~~~~~~~~~~~~~ 1066 (1183)
=.+.|+.-..-|..+++.++... + ..+..++..+...+ +..+..|...++.++..|+...... +
T Consensus 28 ~w~~R~~a~~~L~~l~~~~~~~~---~-~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~-------~---- 92 (242)
T 2qk2_A 28 KWTLRKESLEVLEKLLTDHPKLE---N-GEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR-------F---- 92 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHCSSBC---C-CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG-------G----
T ss_pred CHHHHHHHHHHHHHHHccCCCCC---C-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh-------H----
Confidence 36777777788888888777532 1 23567788888888 4889999999999999999655211 1
Q ss_pred hccCCCCCCCchhHHHHHHHHHHHHHHhccCCCchhHHHhhhHHHHHhcCHHHHHHHHHHHHHcC--CCchhHHHHHHHH
Q 001030 1067 AGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMVGTAADALFPLILCEPRLYQRLGSELIERQ--ANPPFKSRLANAL 1144 (1183)
Q Consensus 1067 ~~~~~~~~~~~~~ll~~ll~~l~~~~l~~~~~~~~~~~~s~~l~~Li~~~~~~f~~~~~~li~~q--~~~~~~~~l~~~F 1144 (1183)
......++..+++. +.+-+......+..++.+++...+ +..++..++..- .++..+.......
T Consensus 93 -----------~~~~~~ilp~ll~~--l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l 157 (242)
T 2qk2_A 93 -----------SNYASACVPSLLEK--FKEKKPNVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFI 157 (242)
T ss_dssp -----------HHHHHHHHHHHHHG--GGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 12344556666653 334444445667777777764322 344444444332 3567777777777
Q ss_pred HHhhc
Q 001030 1145 QSLTS 1149 (1183)
Q Consensus 1145 ~~L~~ 1149 (1183)
..++.
T Consensus 158 ~~~l~ 162 (242)
T 2qk2_A 158 ARALT 162 (242)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 77654
No 30
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=39.59 E-value=2.1e+02 Score=28.21 Aligned_cols=108 Identities=14% Similarity=0.076 Sum_probs=67.8
Q ss_pred CcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHH-HHHHHHHhccCCCchHHHHHHHHHHHHHHHhc
Q 001030 63 QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIG-FCLCFVMQHASSPEGYVQAKISSVAAQLMKRG 141 (1183)
Q Consensus 63 ~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~-~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~ 141 (1183)
..++....+|..+ ++.++..|+.+|.+.... .++.+..+.+ -.+..+.+.-.+...-++...+.++..+....
T Consensus 54 g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 127 (210)
T 4db6_A 54 GALPALVQLLSSP-NEQILQEALWALSNIASG-----GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 127 (210)
T ss_dssp THHHHHHHHTTCS-CHHHHHHHHHHHHHHTTS-----CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcC-----CcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC
Confidence 5567777777654 788999999999988643 2455444432 12233333222335778888888888886421
Q ss_pred ccCCCCCCh-----hHHHHHHHHHhccCCChhhHHHHHHHHHHHHh
Q 001030 142 WLDFTSSDK-----EAFFSQVHQAVLGIHGVDTQFIGINFLESLVS 182 (1183)
Q Consensus 142 W~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~lL~~lv~ 182 (1183)
++.. ...++.+++.+.. +++..+..++..|..+..
T Consensus 128 -----~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 128 -----NEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIAS 167 (210)
T ss_dssp -----HHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHc
Confidence 1011 2356677777765 467778888888888863
No 31
>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=39.53 E-value=7 Score=34.84 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=27.1
Q ss_pred HHHhhhcCC-CcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHH
Q 001030 54 TILGLCQSP-QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIG 109 (1183)
Q Consensus 54 ~L~~f~~~~-~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~ 109 (1183)
.|-++-+.| .+|..++. .+.+|++++ .|=.+|.++|.+|-+
T Consensus 51 tLs~lLr~P~kPW~~L~~----Gre~f~RM~-----------nWL~l~e~eR~eIl~ 92 (101)
T 1wiz_A 51 LLSEILRKEEDPRTASQS----LLVNLRAMQ-----------NFLNLPEVERDRIYQ 92 (101)
T ss_dssp HHHHHHHTCCCTTTCCHH----HHHHHHHHH-----------HHTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHH----HHHHHHHHH-----------HHhcCCHHHHHHHHH
Confidence 344555688 48877533 345555554 788899999887643
No 32
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=38.78 E-value=1.4e+02 Score=32.30 Aligned_cols=124 Identities=16% Similarity=0.099 Sum_probs=71.8
Q ss_pred HHHHHHHHHhhhcCC---------CcHHHHHH-HHhcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHH-----HHHH
Q 001030 48 PAAAEATILGLCQSP---------QPYKACQF-ILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLI-----GFCL 112 (1183)
Q Consensus 48 r~~Ae~~L~~f~~~~---------~~~~~~~~-iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr-----~~ll 112 (1183)
+..|=..|.++-++. ..++.+.. +|. |.++.++-.|+.+|-+..... +..+..+. ..|+
T Consensus 57 k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~-s~~~~vr~~Aa~~Lg~ia~~n-----~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 57 REGALELLADLCENMDNAADFCQLSGMHLLVGRYLE-AGAAGLRWRAAQLIGTCSQNV-----AAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHTTC-----HHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCC-----HHHHHHHHHCCCHHHHH
Confidence 344555556555533 34566666 665 678899999999999987652 44444333 3555
Q ss_pred HHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCC--hhHHHHHHHHHhccCCChhhHHHHHHHHHHHHhh
Q 001030 113 CFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSD--KEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSE 183 (1183)
Q Consensus 113 ~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~lv~E 183 (1183)
+.+... .+.-++.+.+.+++.|++.. +.. .+. ....++-+...+.+ +++..+.-++..|+.+...
T Consensus 131 ~LL~~~---~~~~v~~~A~~ALsnl~~~~-~~~-~~~~~~~ggi~~L~~lL~~-~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 131 RLLDRD---ACDTVRVKALFAISCLVREQ-EAG-LLQFLRLDGFSVLMRAMQQ-QVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp HHHHHC---SCHHHHHHHHHHHHHHHTTC-HHH-HHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHccC---CCHHHHHHHHHHHHHHHcCC-cHH-HHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhC
Confidence 555432 24678888888888887521 110 000 01234445555543 3556666666666666654
No 33
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=38.36 E-value=3.3e+02 Score=27.56 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=67.3
Q ss_pred CcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHHH-HHHHHHhccCCCchHHHHHHHHHHHHHHHhc
Q 001030 63 QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGF-CLCFVMQHASSPEGYVQAKISSVAAQLMKRG 141 (1183)
Q Consensus 63 ~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~-ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~ 141 (1183)
..++....+|+.++ +.++..|+.+|.+..... ++.+..+.+. .+..+.+.-.+....++...+.++..+....
T Consensus 54 g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~-----~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 127 (252)
T 4db8_A 54 GALPALVQLLSSPN-EQILQEALWALSNIASGG-----NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 127 (252)
T ss_dssp THHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSC-----HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCC-----HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Confidence 45666777776554 899999999999886532 4555444332 4444444332345778888888887775311
Q ss_pred ccCCCCCChhHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 001030 142 WLDFTSSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLV 181 (1183)
Q Consensus 142 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~lv 181 (1183)
-.....-.....++.+.+.+.. +++..+..++..|..+.
T Consensus 128 ~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~ 166 (252)
T 4db8_A 128 NEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIA 166 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHH
Confidence 0000000001356677777764 46677788888888776
No 34
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=37.28 E-value=1.4e+02 Score=28.91 Aligned_cols=100 Identities=10% Similarity=-0.006 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhhcCCCcHHHHHHHH----hcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHH
Q 001030 33 HSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFIL----ENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLI 108 (1183)
Q Consensus 33 ~~le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL----~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr 108 (1183)
+.+|+|+...+..+|-...-++-...+..+..-..+...| ..++|+.++.+|+++|+.++.++-..+-.+ ..=|
T Consensus 19 ~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~e--va~~ 96 (157)
T 1elk_A 19 QRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVL--VASQ 96 (157)
T ss_dssp HHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHH--HTSH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHH--HhhH
Confidence 4577887655555564444444444455555444333333 346889999999999999999974332111 1114
Q ss_pred HHHHHHHHhc-c--CCCchHHHHHHHHHH
Q 001030 109 GFCLCFVMQH-A--SSPEGYVQAKISSVA 134 (1183)
Q Consensus 109 ~~ll~~l~~~-~--~~~~~~v~~~l~~~~ 134 (1183)
.|+-+++... . .+.+.-|++++..++
T Consensus 97 ~fl~e~Lvk~~~~k~~~~~~Vk~kil~li 125 (157)
T 1elk_A 97 DFVESVLVRTILPKNNPPTIVHDKVLNLI 125 (157)
T ss_dssp HHHHHHTHHHHSTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence 4555422221 1 124567888876644
No 35
>2v7q_J ATPase inhibitor; ION transport, mitochondrion, transit peptide, inhibitor Pro hydrolase; HET: ATP ADP; 2.1A {Bos taurus} SCOP: h.4.8.1
Probab=34.69 E-value=19 Score=29.19 Aligned_cols=25 Identities=20% Similarity=0.064 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q 001030 33 HSIEIACSSIQMHVNPAAAEATILGLCQ 60 (1183)
Q Consensus 33 ~~le~~~~~l~~~~~r~~Ae~~L~~f~~ 60 (1183)
...|.|-...|- +++..+.|..+++
T Consensus 23 GKrEaA~Ee~Yf---rk~ekEQL~~LKk 47 (66)
T 2v7q_J 23 GKREQAEEERYF---RARAKEQLAALKK 47 (66)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred cchHHHhHHHHH---HHHHHHHHHHHHH
Confidence 556666666665 5444455566654
No 36
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=32.98 E-value=3.5e+02 Score=28.16 Aligned_cols=109 Identities=6% Similarity=0.001 Sum_probs=79.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhCCCC---HHHHHHHHHhhhc---CCCcHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 001030 19 GGGPADLAKLQSIMHSIEIACSSIQMHVN---PAAAEATILGLCQ---SPQPYKACQFILENSQVANARFQAAAAIRDAA 92 (1183)
Q Consensus 19 ~~~~~d~~~l~~~~~~le~~~~~l~~~~~---r~~Ae~~L~~f~~---~~~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i 92 (1183)
+|.+++.+++..+..+|-.. ...++ +..|-+.|..++= .|.-......++ .|++.+++--|+++|.+..
T Consensus 104 e~vpL~~~~y~Kl~~aL~dl----ik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 104 KDVPMGSKTFLKAAKTLVSL----LESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELV-VSPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp TTCCBCHHHHHHHHHHHHHH----TTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHG
T ss_pred cCCCCCHHHHHHHHHHHHHH----hcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHH-hCCChhHHHHHHHHHHHhh
Confidence 46788999998888888765 34455 4667777777742 222345667777 9999999999999999998
Q ss_pred hhc-----cCcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccC
Q 001030 93 MRE-----WSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLD 144 (1183)
Q Consensus 93 ~~~-----W~~l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~ 144 (1183)
.+. |..+-.+-+. +++. ..+|++.+....+-.|..+--++
T Consensus 179 ~~S~D~~i~~~I~~eI~e---------lL~~---eD~~l~e~aLd~Le~ils~pi~~ 223 (265)
T 3b2a_A 179 NSSADSGHLTLILDEIPS---------LLQN---DNEFIVELALDVLEKALSFPLLE 223 (265)
T ss_dssp GGCSSCCCGGGTTTTHHH---------HHTC---SCHHHHHHHHHHHHHHTTSCCCS
T ss_pred cccCCHHHHHHHHHHHHH---------HHcC---CCHHHHHHHHHHHHHHHcCcccH
Confidence 865 7666555443 3333 37999999999999998775554
No 37
>2d5u_A N-glycanase 1; pngase, hydrolase; NMR {Mus musculus} SCOP: d.314.1.1
Probab=32.06 E-value=53 Score=30.51 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=16.5
Q ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHH
Q 001030 10 GGGGDDGGGGGGPADLAKLQSIMHSIE 36 (1183)
Q Consensus 10 ~~~~~~~~~~~~~~d~~~l~~~~~~le 36 (1183)
|.||.+|+||-|+|+. .++..+..|+
T Consensus 1 ~~~~~~~~~~~g~m~~-~l~~~l~~L~ 26 (124)
T 2d5u_A 1 GPLGSMASATLGSSSS-SASPAVAELC 26 (124)
T ss_dssp CCCCCCCCCCCCCCCS-SCCHHHHHHH
T ss_pred CCCCccCccCcCcchH-HHHHHHHHHH
Confidence 5677778888888853 4444445554
No 38
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=28.24 E-value=64 Score=28.31 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHhhccCcCCHHHHHHHHHHHHH
Q 001030 79 NARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLC 113 (1183)
Q Consensus 79 ~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~ 113 (1183)
...+||+..--+ ..+|..+|.+.|.+||+|--.
T Consensus 52 ~~~L~aL~gAi~--G~~w~~l~~~~K~~L~~~~~~ 84 (93)
T 3mab_A 52 MSELYALEGAVQ--GIRWHGLDEAKKIELKKFHQS 84 (93)
T ss_dssp HHHHHHHHHHHH--TSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCcHHHCCHHHHHHHHHHHHH
Confidence 344555443222 279999999999999998654
No 39
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=28.15 E-value=38 Score=28.93 Aligned_cols=25 Identities=20% Similarity=0.064 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHhhhc
Q 001030 33 HSIEIACSSIQMHVNPAAAEATILGLCQ 60 (1183)
Q Consensus 33 ~~le~~~~~l~~~~~r~~Ae~~L~~f~~ 60 (1183)
...|.|-...|- |++..+.|..+++
T Consensus 23 gKrEaA~Ee~Yf---rqkekEqL~~LKk 47 (84)
T 1gmj_A 23 GKREQAEEERYF---RARAKEQLAALKK 47 (84)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred ccHHHHhHHHHH---HHHHHHHHHHHHH
Confidence 566777666665 5444444555554
No 40
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=28.11 E-value=4.2e+02 Score=27.40 Aligned_cols=61 Identities=8% Similarity=0.119 Sum_probs=42.2
Q ss_pred hhhhHHHHHHHHH-HHhhChhhhhcCCHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHHHHHHHH
Q 001030 989 PKLCHDYFSLLSH-LLEVYPETVAQLSTEAFAHVLGTLDFGL-HHQDSEIVDMCLRALRALASYH 1051 (1183)
Q Consensus 989 Pkl~~~ff~Ll~~-l~~~~~~~l~~L~~~~f~~ll~sl~~Gl-~~~d~~I~~~~l~~l~~L~~~~ 1051 (1183)
++-|+.-..-|.. +.+.++..... ...+..+++.+.-++ +..+..|+..+|+++..|++.+
T Consensus 30 w~eRk~al~~L~~~~~~~~~~i~~~--~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l 92 (249)
T 2qk1_A 30 WKDRVEALEEFWDSVLSQTKKLKST--SQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKL 92 (249)
T ss_dssp HHHHHHHHHHHHHHTGGGCCCBCCT--TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccccC--cccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence 5556666655666 66666543210 233556788888888 6778889999999999999655
No 41
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=27.52 E-value=1e+03 Score=29.91 Aligned_cols=68 Identities=9% Similarity=0.116 Sum_probs=52.4
Q ss_pred hccccccccccccchhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHH
Q 001030 975 HIVTPLMSGDLLKYPKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALAS 1049 (1183)
Q Consensus 975 ~~~iPli~~dll~yPkl~~~ff~Ll~~l~~~~~~~l~~L~~~~f~~ll~sl~~Gl~~~d~~I~~~~l~~l~~L~~ 1049 (1183)
..++|.+...--.+|-++......+..+++. ++++.+..++..+..+|.+.+..|...++.++.+|+.
T Consensus 458 ~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~-------~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 458 KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQ-------LTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp HHTHHHHHCSSCSCHHHHHHHHHHHHHTGGG-------SCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHhHHHhcCCCCCCceehHHHHHHHHHHHhh-------CCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 3455654321013899999999888887764 2678899999999999998888899999999998774
No 42
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=26.54 E-value=3.8e+02 Score=24.68 Aligned_cols=109 Identities=12% Similarity=0.055 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHhhhcCCCcH-HHHH----HHHhcCCchhHHHHHHHHHHHHHhhccCcCCHHHHH
Q 001030 31 IMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPY-KACQ----FILENSQVANARFQAAAAIRDAAMREWSFLTADEKK 105 (1183)
Q Consensus 31 ~~~~le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~-~~~~----~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~ 105 (1183)
+......+.+.++++.|-++|.+-+.++.. |.-. ..+. .-|+++ +...+=..+..|..+... +.++.+|-.
T Consensus 6 l~kki~~ll~EY~~~~D~~Ea~~cl~eL~~-p~f~~e~V~~~i~~alE~~-~~~~~e~~~~LL~~L~~~--~~is~~q~~ 81 (129)
T 2nsz_A 6 LVKEIDMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIVMVLEST-GESAFKMILDLLKSLWKS--STITIDQMK 81 (129)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHTC-GGGHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHT--TCSCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhCC-CccHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHC--CCcCHHHHH
Confidence 345667777888888889999999999874 4333 2333 344555 234455566677777654 467777644
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccC
Q 001030 106 SLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLD 144 (1183)
Q Consensus 106 ~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~ 144 (1183)
.=-.-+++.+-...-+ -+...+.+...+++.+..||..
T Consensus 82 ~Gf~~v~~~l~Dl~lD-iP~a~~~l~~~v~~ai~~g~l~ 119 (129)
T 2nsz_A 82 RGYERIYNEIPDINLD-VPHSYSVLERFVEECFQAGIIS 119 (129)
T ss_dssp HHHHHHHHHHHHHHHH-STTHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhhChHhhcC-ccchHHHHHHHHHHHHHCCCCC
Confidence 3223333333322111 1455667778888999999987
No 43
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.50 E-value=5.4e+02 Score=28.01 Aligned_cols=113 Identities=9% Similarity=0.015 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHhhhcCCCcHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhccCcCCHHHHHH
Q 001030 29 QSIMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPYKACQFILENS--QVANARFQAAAAIRDAAMREWSFLTADEKKS 106 (1183)
Q Consensus 29 ~~~~~~le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~~~~~~iL~~S--~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~ 106 (1183)
+.+......+...+++..|-++|.+-+.++.....-...+..++..+ ++...+=.++.+|..+... +.++.++-..
T Consensus 8 ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~--~~is~~~~~~ 85 (339)
T 1ug3_A 8 EELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCA--GHLSTAQYYQ 85 (339)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHT--TSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHC--CCCCHHHHHH
Confidence 33456677777888888888889888888864223334455554322 2334455566666766654 4677766433
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccC
Q 001030 107 LIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLD 144 (1183)
Q Consensus 107 lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~ 144 (1183)
=-.-+++.+-...-|. +...+.+...++..+..||..
T Consensus 86 Gf~~~~~~l~Dl~lDi-P~a~~~La~~v~~~i~~g~l~ 122 (339)
T 1ug3_A 86 GLYEILELAEDMEIDI-PHVWLYLAELVTPILQEGGVP 122 (339)
T ss_dssp HHHHHHHHHHHHTTTC-TTHHHHHHHHHGGGGSTTSCC
T ss_pred HHHHHHhhChHhhcCc-cchHHHHHHHHHHHHHCCCCC
Confidence 3333334334333233 556677777777777777766
No 44
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=25.26 E-value=5.4e+02 Score=25.96 Aligned_cols=107 Identities=9% Similarity=0.049 Sum_probs=71.3
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHhhccCcCCHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccCCC
Q 001030 67 ACQFILENSQVANARFQAAAAIRDAAMREWSFLTADEKKSLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFT 146 (1183)
Q Consensus 67 ~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~ 146 (1183)
.+...|.+.+|..|+--|+.++...... +.+.-...+.. ++.-+..+-.+....||..+..++..+++..-
T Consensus 60 ~L~~~l~kd~~~~V~~~a~~~l~~la~~----l~~~~~~~~~~-ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---- 130 (242)
T 2qk2_A 60 ALKKVITKDSNVVLVAMAGKCLALLAKG----LAKRFSNYASA-CVPSLLEKFKEKKPNVVTALREAIDAIYASTS---- 130 (242)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHH----HGGGGHHHHHH-HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHH----HhhhHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----
Confidence 3444555567888998999999888754 22222222222 33444444445668899999999988876431
Q ss_pred CCChhHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhCC
Q 001030 147 SSDKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFSP 186 (1183)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~lv~E~s~ 186 (1183)
-..+++.+...+.. .++....-.+.+|..++..+++
T Consensus 131 ---~~~ll~~l~~~l~~-~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 131 ---LEAQQESIVESLSN-KNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp ---HHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCCG
T ss_pred ---HHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCC
Confidence 24677777777764 4677888999999998876643
No 45
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=25.03 E-value=3.7e+02 Score=31.20 Aligned_cols=99 Identities=15% Similarity=0.169 Sum_probs=62.0
Q ss_pred HHHHHHHhhCCCC---HHHHHHHHHhhh---cCC--------CcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCcCC
Q 001030 35 IEIACSSIQMHVN---PAAAEATILGLC---QSP--------QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFLT 100 (1183)
Q Consensus 35 le~~~~~l~~~~~---r~~Ae~~L~~f~---~~~--------~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~ 100 (1183)
+|.+++.+++ .| +.+|-+.+..+- ++| ...+....+|..+.++.+|+.|+.+|.+.... +
T Consensus 59 i~~~v~~l~s-~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~-----~ 132 (510)
T 3ul1_B 59 VEDIVKGINS-NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG-----T 132 (510)
T ss_dssp HHHHHHHHTS-SCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTS-----C
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC-----C
Confidence 5556666665 44 333444433332 233 23677888999999999999999999998754 3
Q ss_pred HHHHHHHHH-HHHHHHHhccCCCchHHHHHHHHHHHHHHH
Q 001030 101 ADEKKSLIG-FCLCFVMQHASSPEGYVQAKISSVAAQLMK 139 (1183)
Q Consensus 101 ~~~k~~lr~-~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K 139 (1183)
++++..+.+ =.+..+++.-.....-|+.+.+.++..|..
T Consensus 133 ~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~ 172 (510)
T 3ul1_B 133 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 172 (510)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 666655544 133333333223457788888888877764
No 46
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=24.84 E-value=7.8e+02 Score=31.40 Aligned_cols=143 Identities=13% Similarity=0.038 Sum_probs=79.3
Q ss_pred hhhhHHHHHHHHHHHhhChhhhhcCC--HHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchhhh
Q 001030 989 PKLCHDYFSLLSHLLEVYPETVAQLS--TEAFAHVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQA 1066 (1183)
Q Consensus 989 Pkl~~~ff~Ll~~l~~~~~~~l~~L~--~~~f~~ll~sl~~Gl~~~d~~I~~~~l~~l~~L~~~~~~~~~~~~~~~~~~~ 1066 (1183)
++..+++.+++..+.+.+.+.+..-+ .+.+..++..+.....+.+.+|+..|+++...++.+.++. . ...
T Consensus 311 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~--~---~~~--- 382 (1049)
T 3m1i_C 311 QSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYE--P---LKK--- 382 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHS--T---TCG---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhc--h---hHH---
Confidence 34455566666666665555543311 3445667777776677889999999999999998875431 0 000
Q ss_pred hccCCCCCCCchhHHHHHHHHHHHHHHhccCCCchh---------------------HHHhhhHHHHHhcCHHHHHHHHH
Q 001030 1067 AGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSPDMV---------------------GTAADALFPLILCEPRLYQRLGS 1125 (1183)
Q Consensus 1067 ~~~~~~~~~~~~~ll~~ll~~l~~~~l~~~~~~~~~---------------------~~~s~~l~~Li~~~~~~f~~~~~ 1125 (1183)
.....++.+++..++..+.+.+ +.+|. ..++.+|..+....++....++.
T Consensus 383 --------~~~~~~l~~Lv~~ll~~m~~~e-d~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~ 453 (1049)
T 3m1i_C 383 --------HIYEEICSQLRLVIIENMVRPE-EVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMI 453 (1049)
T ss_dssp --------GGGHHHHHHHHHHHHHTCCCCT-TCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHhcCCCc-ceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 0113567777777777654421 11121 13566777776666654444443
Q ss_pred HHHHc-----CCCchhHHHHHHHHHHhh
Q 001030 1126 ELIER-----QANPPFKSRLANALQSLT 1148 (1183)
Q Consensus 1126 ~li~~-----q~~~~~~~~l~~~F~~L~ 1148 (1183)
+.+.+ .++...++...-++..+.
T Consensus 454 ~~l~~~l~~~~~~W~~~eaal~algsia 481 (1049)
T 3m1i_C 454 SKLARQIDGSEWSWHNINTLSWAIGSIS 481 (1049)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHh
Confidence 33332 123334454444555443
No 47
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=21.54 E-value=3.2e+02 Score=30.53 Aligned_cols=138 Identities=11% Similarity=0.007 Sum_probs=82.3
Q ss_pred HHHHHHHhhCCCC---HHHHHHHHHhhh---cCC---------CcHHHHHHHHhcCCchhHHHHHHHHHHHHHhhccCcC
Q 001030 35 IEIACSSIQMHVN---PAAAEATILGLC---QSP---------QPYKACQFILENSQVANARFQAAAAIRDAAMREWSFL 99 (1183)
Q Consensus 35 le~~~~~l~~~~~---r~~Ae~~L~~f~---~~~---------~~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l 99 (1183)
+..+++.+.+ ++ |..|-..|..+- .+| ..++....+|....++.++..|+.+|.+.....
T Consensus 22 l~~l~~~l~s-~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~---- 96 (450)
T 2jdq_A 22 TSDMIEMIFS-KSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGN---- 96 (450)
T ss_dssp CHHHHHHHHS-SCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC----
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC----
Confidence 3444544444 34 556666665542 222 457777778877778999999999999987632
Q ss_pred CHHHHHH-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccCCCCCCh-----hHHHHHHHHHhccCCChhhHHHH
Q 001030 100 TADEKKS-LIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSSDK-----EAFFSQVHQAVLGIHGVDTQFIG 173 (1183)
Q Consensus 100 ~~~~k~~-lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 173 (1183)
++.+.. ++.-++..+.+.-.+...-|+...+.++..+...+- ..+ ...+..+.+.+....++..+..+
T Consensus 97 -~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~-----~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a 170 (450)
T 2jdq_A 97 -SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDST-----MCRDYVLDCNILPPLLQLFSKQNRLTMTRNA 170 (450)
T ss_dssp -HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-----HHHHHHHHTTCHHHHHHHTTSCCCHHHHHHH
T ss_pred -HHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCH-----HHHHHHHHCCCHHHHHHHhcCCCCHHHHHHH
Confidence 232222 222344444443323457788888888888875321 011 12455666666532356777888
Q ss_pred HHHHHHHHhh
Q 001030 174 INFLESLVSE 183 (1183)
Q Consensus 174 l~lL~~lv~E 183 (1183)
+..|..+...
T Consensus 171 ~~~L~~l~~~ 180 (450)
T 2jdq_A 171 VWALSNLCRG 180 (450)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHhCC
Confidence 8888888753
No 48
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=21.42 E-value=2.5e+02 Score=29.46 Aligned_cols=107 Identities=8% Similarity=0.054 Sum_probs=61.2
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHhhhcCCCccchhhhhccCCCCCCCchhHHHHHHHHHHHHHHhccCCC
Q 001030 1020 HVLGTLDFGLHHQDSEIVDMCLRALRALASYHYKETGAGKVGLAAQAAGINNSNGNPEEGVLSRFLRSLLQLLLFEDYSP 1099 (1183)
Q Consensus 1020 ~ll~sl~~Gl~~~d~~I~~~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~l~~~~~~ 1099 (1183)
.+++.+.-|+++-.+-+...|+..|..+...|.... .. ....++.++..+.. ++++.+.
T Consensus 139 ~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~------~~-------------~k~~l~~i~~~l~k--~l~d~~~ 197 (278)
T 4ffb_C 139 QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTN------VN-------------VQTFLPELLKHVPQ--LAGHGDR 197 (278)
T ss_dssp HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTT------CC-------------HHHHHHHHGGGHHH--HHTCSSH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCc------CC-------------chhHHHHHHHHHHH--HHhCCcH
Confidence 346777889999999999999999999887653110 00 01234444444443 3466666
Q ss_pred chhHHHhhhHHHHHhcCHHHHHHHHHHHHHcCCCchhHHHHHHHHHHhh
Q 001030 1100 DMVGTAADALFPLILCEPRLYQRLGSELIERQANPPFKSRLANALQSLT 1148 (1183)
Q Consensus 1100 ~~~~~~s~~l~~Li~~~~~~f~~~~~~li~~q~~~~~~~~l~~~F~~L~ 1148 (1183)
+.-..+...+..+...-.+........++.... |..+..|.+.|.+.-
T Consensus 198 ~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lk-p~~~k~le~~f~k~~ 245 (278)
T 4ffb_C 198 NVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLK-PIQVKDLHKLFAKVG 245 (278)
T ss_dssp HHHHHHHHHHHHHHTC-----------CTTSSC-HHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCC-HHHHHHHHHHHHhcC
Confidence 655555555555543333333334444555444 788888999998774
No 49
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.36 E-value=5.1e+02 Score=24.66 Aligned_cols=109 Identities=12% Similarity=0.055 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHhhhcCCCcH-HHH----HHHHhcCCchhHHHHHHHHHHHHHhhccCcCCHHHHH
Q 001030 31 IMHSIEIACSSIQMHVNPAAAEATILGLCQSPQPY-KAC----QFILENSQVANARFQAAAAIRDAAMREWSFLTADEKK 105 (1183)
Q Consensus 31 ~~~~le~~~~~l~~~~~r~~Ae~~L~~f~~~~~~~-~~~----~~iL~~S~~~~~~f~a~~~L~~~i~~~W~~l~~~~k~ 105 (1183)
+...+..+.+.++++.|-++|.+-+.++.. |.-. ..+ ..-|+++ +...+=..+..|..+... +.++.+|-.
T Consensus 8 l~kki~~lL~EY~~~~D~~EA~~cl~EL~~-p~f~~e~V~~~i~~alE~~-~~~~re~~~~LL~~L~~~--~~is~~q~~ 83 (152)
T 2ion_A 8 LVKEIDMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIVMVLEST-GESAFKMILDLLKSLWKS--STITIDQMK 83 (152)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHTC-GGGHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHT--TCSCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHC--CCcCHHHHH
Confidence 345667777888888889999999999874 4332 233 3344554 344555666777777655 467777754
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHhcccC
Q 001030 106 SLIGFCLCFVMQHASSPEGYVQAKISSVAAQLMKRGWLD 144 (1183)
Q Consensus 106 ~lr~~ll~~l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~ 144 (1183)
.=-.-+++.+-...-+ -+.+.+.+...+++.+..||..
T Consensus 84 ~Gf~~vl~~ldDl~lD-iP~A~~~la~~v~~ai~~g~l~ 121 (152)
T 2ion_A 84 RGYERIYNEIPDINLD-VPHSYSVLERFVEECFQAGIIS 121 (152)
T ss_dssp HHHHHHHHHHHHHHHH-STTHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhChHhccC-ccchHHHHHHHHHHHHHCCCCC
Confidence 3333333333322211 2455667778888899999977
No 50
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=21.06 E-value=6.4e+02 Score=25.89 Aligned_cols=132 Identities=11% Similarity=0.010 Sum_probs=81.3
Q ss_pred HHHHHHHHHh-hh-cCC------C----cHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcc-CcCCHHHHHHHHHHHHHH
Q 001030 48 PAAAEATILG-LC-QSP------Q----PYKACQFILENSQVANARFQAAAAIRDAAMREW-SFLTADEKKSLIGFCLCF 114 (1183)
Q Consensus 48 r~~Ae~~L~~-f~-~~~------~----~~~~~~~iL~~S~~~~~~f~a~~~L~~~i~~~W-~~l~~~~k~~lr~~ll~~ 114 (1183)
|++|=..|.. +- ..| . -+..+...|.+-+|+.+..-|+.+|......-= ..+. +..... ++--
T Consensus 33 Rk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~---~~y~~~-llp~ 108 (249)
T 2qk1_A 33 RVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS---KDYVSL-VFTP 108 (249)
T ss_dssp HHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC---HHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc---HHHHHH-HHHH
Confidence 6666666666 53 222 1 234455566677888888888888888764321 1121 022222 3334
Q ss_pred HHhccCCCchHHHHHHHHHHHHHHHhcccCCCCC-ChhHHHHHHHHHhccCCChhhHHHHHHHHHHHHhhhC
Q 001030 115 VMQHASSPEGYVQAKISSVAAQLMKRGWLDFTSS-DKEAFFSQVHQAVLGIHGVDTQFIGINFLESLVSEFS 185 (1183)
Q Consensus 115 l~~~~~~~~~~v~~~l~~~~a~i~K~~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~lv~E~s 185 (1183)
++++-.+-.+-|++++..++..+.+..=+.. .. .-+.+++.+...+.+ .++....-++.+|...+....
T Consensus 109 ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~-~~~~l~~ll~~l~~~l~~-k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 109 LLDRTKEKKPSVIEAIRKALLTICKYYDPLA-SSGRNEDMLKDILEHMKH-KTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHGGGCCCHHHHHHHHHHHHHHHHHSCTTC-TTCTTHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHccccc-cCCcHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcC
Confidence 4555435557799999888888888652211 10 134688888888864 467788899999999887653
No 51
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=21.05 E-value=1.2e+03 Score=28.44 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=42.3
Q ss_pred hhhhHHHHHHHHHHHhhChhhhhcCCHHHHHHHHHHHHhhccCC-chHHHHHHHHHHHHHHHHH
Q 001030 989 PKLCHDYFSLLSHLLEVYPETVAQLSTEAFAHVLGTLDFGLHHQ-DSEIVDMCLRALRALASYH 1051 (1183)
Q Consensus 989 Pkl~~~ff~Ll~~l~~~~~~~l~~L~~~~f~~ll~sl~~Gl~~~-d~~I~~~~l~~l~~L~~~~ 1051 (1183)
+.++...+.++..+++.....+. ..+..++..+..++... +.+|...++.++..++..+
T Consensus 622 ~~v~~~a~~~l~~l~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 681 (876)
T 1qgr_A 622 GGVQEDALMAVSTLVEVLGGEFL----KYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRAL 681 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGGG----GGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHH
Confidence 46778888888888876544432 22455666666677765 7889999999999888665
Done!