Query 001031
Match_columns 1183
No_of_seqs 605 out of 2994
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 13:53:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 4.8E-63 1E-67 571.0 37.2 507 446-1178 182-742 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 4.2E-59 9.1E-64 546.8 31.2 369 703-1175 276-658 (693)
3 TIGR01243 CDC48 AAA family ATP 100.0 2.8E-48 6.1E-53 483.8 37.9 486 449-1175 173-678 (733)
4 KOG0737 AAA+-type ATPase [Post 100.0 5.2E-48 1.1E-52 431.0 24.6 312 859-1177 7-319 (386)
5 KOG0736 Peroxisome assembly fa 100.0 6.4E-46 1.4E-50 438.2 37.6 405 690-1178 479-904 (953)
6 COG0464 SpoVK ATPases of the A 100.0 1.7E-42 3.6E-47 414.5 32.9 431 645-1174 20-467 (494)
7 COG1222 RPT1 ATP-dependent 26S 100.0 1.2E-42 2.6E-47 386.0 21.2 232 943-1177 145-380 (406)
8 KOG0741 AAA+-type ATPase [Post 100.0 1.7E-40 3.6E-45 379.4 21.1 427 645-1167 258-721 (744)
9 KOG0738 AAA+-type ATPase [Post 100.0 3.6E-40 7.9E-45 367.4 20.4 234 942-1177 205-440 (491)
10 KOG0735 AAA+-type ATPase [Post 100.0 7.7E-38 1.7E-42 366.8 28.0 299 850-1179 595-895 (952)
11 KOG0733 Nuclear AAA ATPase (VC 100.0 1.4E-37 3.1E-42 360.5 23.6 231 945-1178 186-420 (802)
12 KOG0739 AAA+-type ATPase [Post 100.0 7.9E-38 1.7E-42 338.6 15.7 236 936-1175 120-356 (439)
13 KOG0734 AAA+-type ATPase conta 100.0 2.1E-36 4.5E-41 346.2 18.6 231 940-1175 295-527 (752)
14 CHL00195 ycf46 Ycf46; Provisio 100.0 2.6E-33 5.7E-38 332.9 31.9 282 848-1172 162-447 (489)
15 KOG0727 26S proteasome regulat 100.0 1.4E-33 3E-38 300.0 18.8 231 940-1173 146-380 (408)
16 KOG0732 AAA+-type ATPase conta 100.0 3.5E-35 7.6E-40 362.1 6.2 415 630-1134 288-728 (1080)
17 KOG0728 26S proteasome regulat 100.0 8.2E-33 1.8E-37 293.9 18.2 226 945-1173 143-372 (404)
18 KOG0652 26S proteasome regulat 100.0 7.9E-33 1.7E-37 295.3 17.2 229 943-1174 165-397 (424)
19 KOG0731 AAA+-type ATPase conta 100.0 1.2E-32 2.5E-37 333.1 20.6 230 942-1175 304-539 (774)
20 KOG0726 26S proteasome regulat 100.0 7.6E-33 1.7E-37 299.2 13.3 230 945-1177 181-414 (440)
21 COG1223 Predicted ATPase (AAA+ 100.0 3.9E-32 8.5E-37 290.5 17.6 229 945-1180 117-346 (368)
22 PTZ00454 26S protease regulato 100.0 2.1E-31 4.6E-36 310.4 23.9 228 943-1173 139-370 (398)
23 KOG0740 AAA+-type ATPase [Post 100.0 5.8E-32 1.3E-36 311.8 16.4 230 943-1175 147-377 (428)
24 KOG0729 26S proteasome regulat 100.0 1.5E-31 3.3E-36 286.1 15.5 229 943-1174 171-403 (435)
25 PRK03992 proteasome-activating 100.0 4.6E-30 9.9E-35 299.3 23.5 227 944-1173 126-356 (389)
26 COG0465 HflB ATP-dependent Zn 100.0 4.1E-30 8.8E-35 306.9 18.6 230 943-1176 144-377 (596)
27 PTZ00361 26 proteosome regulat 100.0 1.4E-29 3E-34 297.4 21.0 227 944-1173 178-408 (438)
28 TIGR01241 FtsH_fam ATP-depende 100.0 9.6E-29 2.1E-33 296.5 22.3 227 942-1172 48-278 (495)
29 TIGR01242 26Sp45 26S proteasom 100.0 8.3E-28 1.8E-32 278.0 22.6 228 943-1173 116-347 (364)
30 TIGR03689 pup_AAA proteasome A 100.0 2.6E-27 5.7E-32 281.8 24.2 230 943-1175 176-460 (512)
31 KOG0732 AAA+-type ATPase conta 100.0 4.9E-28 1.1E-32 299.3 18.5 309 830-1174 176-494 (1080)
32 KOG0651 26S proteasome regulat 100.0 1.8E-28 3.9E-33 268.3 12.5 230 945-1177 128-361 (388)
33 KOG0730 AAA+-type ATPase [Post 100.0 1.4E-27 3.1E-32 281.9 20.0 222 945-1172 181-404 (693)
34 CHL00176 ftsH cell division pr 100.0 2.9E-27 6.2E-32 289.2 22.3 227 943-1173 177-407 (638)
35 TIGR01243 CDC48 AAA family ATP 99.9 1.2E-25 2.6E-30 281.2 23.9 228 944-1175 173-402 (733)
36 PRK10733 hflB ATP-dependent me 99.9 8.6E-26 1.9E-30 278.2 22.1 227 943-1173 146-376 (644)
37 CHL00206 ycf2 Ycf2; Provisiona 99.9 1.2E-25 2.6E-30 287.1 19.7 186 981-1173 1627-1861(2281)
38 PLN00020 ribulose bisphosphate 99.9 4.6E-25 1E-29 249.8 21.2 189 981-1173 145-355 (413)
39 KOG0741 AAA+-type ATPase [Post 99.9 1.4E-24 3.1E-29 249.5 12.0 230 945-1177 215-463 (744)
40 COG1222 RPT1 ATP-dependent 26S 99.9 1.1E-22 2.3E-27 227.5 13.2 232 448-916 145-394 (406)
41 KOG0738 AAA+-type ATPase [Post 99.9 2E-22 4.4E-27 226.1 12.8 250 447-917 205-472 (491)
42 TIGR02639 ClpA ATP-dependent C 99.9 1E-19 2.3E-24 227.8 30.4 206 950-1175 455-717 (731)
43 KOG0737 AAA+-type ATPase [Post 99.8 1.7E-20 3.8E-25 211.0 12.0 232 435-885 73-317 (386)
44 PRK11034 clpA ATP-dependent Cl 99.8 5.5E-18 1.2E-22 211.2 31.0 209 950-1175 459-721 (758)
45 CHL00181 cbbX CbbX; Provisiona 99.8 7.9E-18 1.7E-22 189.5 21.1 217 950-1177 24-262 (287)
46 PF00004 AAA: ATPase family as 99.8 2.4E-18 5.3E-23 168.2 13.6 130 987-1118 1-132 (132)
47 TIGR02881 spore_V_K stage V sp 99.8 1.1E-17 2.3E-22 185.6 19.9 218 948-1177 5-246 (261)
48 KOG0744 AAA+-type ATPase [Post 99.8 1.5E-18 3.1E-23 191.7 12.2 225 936-1162 129-389 (423)
49 KOG0742 AAA+-type ATPase [Post 99.8 1E-17 2.2E-22 188.8 18.8 207 946-1163 352-586 (630)
50 TIGR02880 cbbX_cfxQ probable R 99.7 4.9E-17 1.1E-21 182.8 20.9 216 950-1176 23-260 (284)
51 CHL00095 clpC Clp protease ATP 99.7 9.4E-16 2E-20 194.6 33.4 211 949-1176 509-788 (821)
52 KOG0739 AAA+-type ATPase [Post 99.7 1.8E-18 3.8E-23 189.0 6.9 222 435-877 115-348 (439)
53 COG0464 SpoVK ATPases of the A 99.7 1.5E-17 3.3E-22 199.9 14.8 254 431-916 215-485 (494)
54 KOG0734 AAA+-type ATPase conta 99.7 1.1E-17 2.4E-22 193.5 11.5 221 439-881 289-523 (752)
55 COG0542 clpA ATP-binding subun 99.7 7.3E-16 1.6E-20 189.4 27.7 202 950-1174 492-759 (786)
56 KOG0735 AAA+-type ATPase [Post 99.7 7.2E-17 1.6E-21 191.6 16.9 215 950-1176 409-631 (952)
57 PRK10865 protein disaggregatio 99.7 1.1E-15 2.4E-20 194.2 28.3 208 948-1175 567-834 (857)
58 TIGR03345 VI_ClpV1 type VI sec 99.7 2.2E-15 4.8E-20 191.0 29.3 203 949-1174 566-835 (852)
59 TIGR03346 chaperone_ClpB ATP-d 99.7 6.2E-15 1.3E-19 187.8 32.6 208 949-1176 565-832 (852)
60 CHL00195 ycf46 Ycf46; Provisio 99.7 8.9E-17 1.9E-21 192.2 13.9 249 430-918 207-467 (489)
61 KOG0743 AAA+-type ATPase [Post 99.7 4.7E-16 1E-20 179.6 18.5 219 946-1175 198-429 (457)
62 PF05496 RuvB_N: Holliday junc 99.7 5.6E-16 1.2E-20 166.9 14.2 195 946-1163 21-223 (233)
63 KOG0736 Peroxisome assembly fa 99.7 1.1E-15 2.3E-20 183.3 17.8 188 985-1175 432-619 (953)
64 CHL00206 ycf2 Ycf2; Provisiona 99.6 4E-16 8.6E-21 201.2 11.4 134 687-884 1718-1862(2281)
65 COG2256 MGS1 ATPase related to 99.6 3.4E-15 7.3E-20 170.2 17.2 180 946-1166 21-217 (436)
66 PTZ00454 26S protease regulato 99.6 1.1E-15 2.4E-20 179.1 12.1 232 447-914 138-386 (398)
67 PRK03992 proteasome-activating 99.6 1.3E-15 2.8E-20 178.4 12.5 234 447-916 124-374 (389)
68 TIGR02639 ClpA ATP-dependent C 99.6 1.2E-14 2.7E-19 182.5 19.2 185 946-1155 179-386 (731)
69 TIGR00763 lon ATP-dependent pr 99.6 1.3E-14 2.9E-19 183.2 19.6 214 950-1175 321-560 (775)
70 TIGR00635 ruvB Holliday juncti 99.6 3.1E-14 6.8E-19 160.6 20.1 200 947-1169 2-209 (305)
71 KOG0731 AAA+-type ATPase conta 99.6 2.8E-15 6.1E-20 183.2 11.5 219 446-883 303-537 (774)
72 PRK00080 ruvB Holliday junctio 99.6 5.2E-14 1.1E-18 161.2 20.8 202 946-1170 22-231 (328)
73 PRK12323 DNA polymerase III su 99.6 5.3E-14 1.1E-18 170.4 18.7 186 945-1167 12-231 (700)
74 PRK14956 DNA polymerase III su 99.6 8.8E-14 1.9E-18 164.9 20.2 185 945-1166 14-227 (484)
75 KOG0740 AAA+-type ATPase [Post 99.6 4.8E-15 1.1E-19 172.3 9.4 243 450-916 149-406 (428)
76 PRK07003 DNA polymerase III su 99.6 8.3E-14 1.8E-18 170.4 20.0 186 945-1167 12-226 (830)
77 PRK11034 clpA ATP-dependent Cl 99.5 6.5E-14 1.4E-18 175.2 18.3 198 947-1168 184-408 (758)
78 TIGR01241 FtsH_fam ATP-depende 99.5 7.8E-15 1.7E-19 176.8 9.7 216 444-881 45-277 (495)
79 COG2255 RuvB Holliday junction 99.5 1.2E-13 2.6E-18 151.6 16.8 189 945-1155 22-218 (332)
80 PTZ00361 26 proteosome regulat 99.5 2.1E-14 4.7E-19 169.7 10.3 144 690-914 265-424 (438)
81 PRK14949 DNA polymerase III su 99.5 4.3E-13 9.4E-18 166.9 21.0 191 945-1166 12-225 (944)
82 TIGR02902 spore_lonB ATP-depen 99.5 2.4E-13 5.2E-18 165.1 18.0 205 945-1171 61-314 (531)
83 PRK14960 DNA polymerase III su 99.5 5.6E-13 1.2E-17 162.0 20.2 186 945-1167 11-225 (702)
84 PRK07994 DNA polymerase III su 99.5 5.9E-13 1.3E-17 163.3 20.7 185 945-1166 12-225 (647)
85 PRK14962 DNA polymerase III su 99.5 1.1E-12 2.3E-17 157.1 21.9 185 945-1166 10-223 (472)
86 TIGR03345 VI_ClpV1 type VI sec 99.5 7.7E-13 1.7E-17 168.2 20.7 185 946-1155 184-391 (852)
87 CHL00176 ftsH cell division pr 99.5 7.2E-14 1.6E-18 172.1 10.2 219 443-882 172-406 (638)
88 PRK14961 DNA polymerase III su 99.5 1.4E-12 3.1E-17 151.6 20.4 185 945-1166 12-225 (363)
89 PRK14958 DNA polymerase III su 99.5 8.6E-13 1.9E-17 159.3 18.9 187 945-1168 12-227 (509)
90 KOG0726 26S proteasome regulat 99.5 2.4E-14 5.3E-19 156.5 4.9 186 645-914 221-426 (440)
91 PRK10865 protein disaggregatio 99.5 6E-13 1.3E-17 169.5 18.1 183 946-1153 175-380 (857)
92 PRK14964 DNA polymerase III su 99.5 1.5E-12 3.3E-17 155.7 20.0 187 945-1168 9-224 (491)
93 CHL00095 clpC Clp protease ATP 99.5 9.8E-13 2.1E-17 167.3 19.5 185 946-1155 176-382 (821)
94 COG0466 Lon ATP-dependent Lon 99.5 1.2E-12 2.6E-17 157.7 18.9 172 949-1132 323-508 (782)
95 PRK05342 clpX ATP-dependent pr 99.5 1.2E-12 2.6E-17 154.2 18.6 226 951-1176 73-385 (412)
96 PRK04195 replication factor C 99.5 2.1E-12 4.6E-17 155.4 21.1 184 945-1159 10-201 (482)
97 PRK06645 DNA polymerase III su 99.5 2.1E-12 4.6E-17 155.4 20.9 187 945-1168 17-236 (507)
98 PRK13342 recombination factor 99.5 2.6E-12 5.6E-17 151.9 20.5 180 946-1166 9-201 (413)
99 PRK08691 DNA polymerase III su 99.4 2E-12 4.3E-17 158.4 19.7 187 945-1168 12-227 (709)
100 PRK07940 DNA polymerase III su 99.4 2.5E-12 5.3E-17 150.9 19.7 192 947-1163 3-216 (394)
101 KOG2004 Mitochondrial ATP-depe 99.4 7.9E-13 1.7E-17 158.2 15.4 214 949-1174 411-654 (906)
102 TIGR03346 chaperone_ClpB ATP-d 99.4 2.3E-12 4.9E-17 164.5 20.5 184 946-1154 170-376 (852)
103 PRK10733 hflB ATP-dependent me 99.4 2.5E-13 5.4E-18 168.4 11.3 127 690-882 233-375 (644)
104 TIGR00390 hslU ATP-dependent p 99.4 2.8E-12 6.1E-17 149.4 17.6 222 950-1172 13-407 (441)
105 PLN03025 replication factor C 99.4 3.8E-12 8.2E-17 145.5 18.5 181 945-1163 9-202 (319)
106 PRK14951 DNA polymerase III su 99.4 4.3E-12 9.3E-17 155.5 20.0 186 945-1167 12-231 (618)
107 KOG2028 ATPase related to the 99.4 2.7E-12 5.9E-17 144.1 16.6 179 946-1164 135-340 (554)
108 PRK14957 DNA polymerase III su 99.4 6.9E-12 1.5E-16 152.0 21.0 185 945-1166 12-225 (546)
109 PRK07764 DNA polymerase III su 99.4 3E-12 6.5E-17 161.5 18.4 185 945-1166 11-226 (824)
110 TIGR01242 26Sp45 26S proteasom 99.4 4.9E-13 1.1E-17 155.3 10.6 127 690-882 204-346 (364)
111 PRK14969 DNA polymerase III su 99.4 4E-12 8.7E-17 154.3 18.8 186 945-1167 12-226 (527)
112 PRK14963 DNA polymerase III su 99.4 8.3E-12 1.8E-16 150.6 21.0 185 945-1166 10-222 (504)
113 PRK05563 DNA polymerase III su 99.4 1.1E-11 2.3E-16 151.7 21.4 185 945-1166 12-225 (559)
114 PRK14952 DNA polymerase III su 99.4 1.1E-11 2.5E-16 151.2 21.2 185 945-1166 9-224 (584)
115 KOG0989 Replication factor C, 99.4 3.7E-12 8.1E-17 141.3 15.1 184 945-1162 32-232 (346)
116 KOG0729 26S proteasome regulat 99.4 2.9E-13 6.3E-18 146.6 5.7 188 645-916 213-420 (435)
117 PRK05201 hslU ATP-dependent pr 99.4 4.2E-12 9.2E-17 148.0 15.5 220 950-1170 16-407 (443)
118 PRK14959 DNA polymerase III su 99.4 1.3E-11 2.8E-16 150.7 19.9 179 945-1159 12-219 (624)
119 PHA02544 44 clamp loader, smal 99.4 2.6E-11 5.6E-16 137.7 21.2 157 945-1133 17-174 (316)
120 PRK12402 replication factor C 99.4 2.1E-11 4.5E-16 138.9 20.1 189 945-1165 11-230 (337)
121 KOG0652 26S proteasome regulat 99.4 5.4E-13 1.2E-17 144.2 6.5 187 645-915 207-413 (424)
122 TIGR03420 DnaA_homol_Hda DnaA 99.4 3.9E-11 8.4E-16 129.3 20.7 189 946-1171 12-211 (226)
123 PRK00149 dnaA chromosomal repl 99.4 1.6E-11 3.5E-16 146.7 19.2 170 985-1168 149-329 (450)
124 TIGR02397 dnaX_nterm DNA polym 99.4 2.4E-11 5.1E-16 139.8 19.9 186 945-1167 10-224 (355)
125 PF05673 DUF815: Protein of un 99.4 2.6E-11 5.6E-16 132.7 19.0 191 945-1165 23-245 (249)
126 PRK14965 DNA polymerase III su 99.4 1.6E-11 3.5E-16 150.6 19.0 184 945-1165 12-224 (576)
127 PRK10787 DNA-binding ATP-depen 99.4 1.1E-11 2.4E-16 156.2 17.9 208 950-1176 323-562 (784)
128 PRK05896 DNA polymerase III su 99.3 2.2E-11 4.8E-16 148.0 19.6 184 945-1165 12-224 (605)
129 PRK06647 DNA polymerase III su 99.3 2.9E-11 6.3E-16 147.6 20.8 185 945-1166 12-225 (563)
130 COG0465 HflB ATP-dependent Zn 99.3 7.1E-13 1.5E-17 159.9 6.0 166 645-885 185-376 (596)
131 TIGR00382 clpX endopeptidase C 99.3 1.9E-11 4E-16 143.8 17.6 226 951-1176 79-391 (413)
132 PRK06305 DNA polymerase III su 99.3 5.5E-11 1.2E-15 142.0 21.5 184 945-1165 13-226 (451)
133 TIGR00362 DnaA chromosomal rep 99.3 3E-11 6.5E-16 142.4 18.4 169 985-1167 137-316 (405)
134 PRK09111 DNA polymerase III su 99.3 4.5E-11 9.7E-16 146.7 20.5 192 945-1167 20-239 (598)
135 PRK14970 DNA polymerase III su 99.3 7.2E-11 1.6E-15 137.2 21.1 187 945-1166 13-214 (367)
136 PRK07133 DNA polymerase III su 99.3 5.4E-11 1.2E-15 147.2 20.8 190 945-1165 14-223 (725)
137 PRK14953 DNA polymerase III su 99.3 5.9E-11 1.3E-15 142.8 20.7 185 945-1166 12-225 (486)
138 TIGR02928 orc1/cdc6 family rep 99.3 1.1E-10 2.4E-15 134.9 22.2 203 949-1172 15-257 (365)
139 PRK13341 recombination factor 99.3 3.6E-11 7.9E-16 150.2 19.5 182 945-1167 24-223 (725)
140 KOG0727 26S proteasome regulat 99.3 5.7E-12 1.2E-16 135.9 10.6 216 445-881 146-378 (408)
141 KOG0728 26S proteasome regulat 99.3 1.6E-12 3.5E-17 140.0 6.1 186 645-914 183-388 (404)
142 COG2812 DnaX DNA polymerase II 99.3 1.2E-11 2.5E-16 148.1 14.0 193 945-1168 12-227 (515)
143 PRK08451 DNA polymerase III su 99.3 7.2E-11 1.6E-15 142.7 20.6 188 945-1169 10-226 (535)
144 PLN00020 ribulose bisphosphate 99.3 5.4E-12 1.2E-16 144.4 10.3 127 690-881 196-353 (413)
145 PRK08084 DNA replication initi 99.3 1.6E-10 3.5E-15 126.8 21.4 185 945-1166 18-214 (235)
146 PRK08903 DnaA regulatory inact 99.3 1.9E-10 4.2E-15 124.8 21.8 181 945-1167 14-205 (227)
147 PRK14948 DNA polymerase III su 99.3 1E-10 2.2E-15 144.4 20.4 188 945-1163 12-224 (620)
148 PRK14955 DNA polymerase III su 99.3 9.7E-11 2.1E-15 137.9 19.0 185 945-1166 12-233 (397)
149 PRK06893 DNA replication initi 99.3 2.1E-10 4.7E-15 125.4 20.2 160 985-1166 40-208 (229)
150 PRK08727 hypothetical protein; 99.3 4.6E-10 1E-14 123.1 22.4 158 985-1166 42-209 (233)
151 PRK14088 dnaA chromosomal repl 99.3 8.5E-11 1.8E-15 140.1 17.9 168 985-1165 131-309 (440)
152 TIGR02640 gas_vesic_GvpN gas v 99.3 6.5E-11 1.4E-15 132.0 15.5 141 985-1132 22-198 (262)
153 PRK00411 cdc6 cell division co 99.3 3.5E-10 7.5E-15 132.2 21.8 204 948-1172 29-265 (394)
154 PRK14954 DNA polymerase III su 99.2 2.8E-10 6.2E-15 140.0 21.5 187 945-1163 12-230 (620)
155 PRK14950 DNA polymerase III su 99.2 2.6E-10 5.6E-15 140.5 20.5 183 945-1164 12-224 (585)
156 COG1223 Predicted ATPase (AAA+ 99.2 3.1E-11 6.8E-16 131.1 10.6 127 689-881 198-337 (368)
157 PRK14086 dnaA chromosomal repl 99.2 2.3E-10 4.9E-15 139.4 18.9 167 985-1166 315-493 (617)
158 PRK00440 rfc replication facto 99.2 5.9E-10 1.3E-14 126.0 20.8 185 945-1167 13-209 (319)
159 PF00308 Bac_DnaA: Bacterial d 99.2 6.3E-10 1.4E-14 121.1 20.0 170 985-1168 35-215 (219)
160 TIGR03689 pup_AAA proteasome A 99.2 3E-11 6.4E-16 145.3 10.5 126 689-881 273-412 (512)
161 cd00009 AAA The AAA+ (ATPases 99.2 3.6E-10 7.9E-15 110.1 15.2 124 984-1117 19-150 (151)
162 TIGR02903 spore_lon_C ATP-depe 99.2 5.2E-10 1.1E-14 138.4 19.8 201 945-1167 150-400 (615)
163 KOG0651 26S proteasome regulat 99.2 5.8E-11 1.3E-15 131.8 9.9 146 689-916 213-375 (388)
164 PHA02244 ATPase-like protein 99.2 2.5E-10 5.5E-15 131.6 15.5 130 985-1121 120-263 (383)
165 PRK12422 chromosomal replicati 99.2 4E-10 8.7E-15 134.4 17.4 167 985-1165 142-317 (445)
166 PRK06620 hypothetical protein; 99.2 1.2E-09 2.7E-14 118.5 19.4 144 985-1165 45-193 (214)
167 PTZ00112 origin recognition co 99.2 4.3E-10 9.4E-15 138.7 17.6 197 949-1167 755-987 (1164)
168 PRK14971 DNA polymerase III su 99.2 9E-10 2E-14 136.0 20.5 184 945-1165 13-226 (614)
169 PRK05642 DNA replication initi 99.2 1.8E-09 4E-14 118.6 20.6 162 985-1169 46-216 (234)
170 PRK13407 bchI magnesium chelat 99.2 1.1E-10 2.4E-15 134.2 11.2 169 945-1132 4-216 (334)
171 PRK14087 dnaA chromosomal repl 99.1 8.9E-10 1.9E-14 131.8 18.7 172 985-1171 142-329 (450)
172 TIGR01650 PD_CobS cobaltochela 99.1 1.6E-10 3.4E-15 131.9 11.6 142 985-1132 65-233 (327)
173 CHL00081 chlI Mg-protoporyphyr 99.1 6.4E-10 1.4E-14 128.5 14.7 168 945-1132 13-232 (350)
174 PRK09112 DNA polymerase III su 99.1 3.1E-09 6.8E-14 123.3 20.3 187 945-1163 19-242 (351)
175 PRK05564 DNA polymerase III su 99.1 3.3E-09 7.1E-14 121.1 19.8 172 947-1155 2-185 (313)
176 KOG0991 Replication factor C, 99.1 1E-09 2.2E-14 118.0 13.6 185 946-1164 24-218 (333)
177 PF00498 FHA: FHA domain; Int 99.1 3.5E-10 7.5E-15 100.3 8.3 67 154-224 1-68 (68)
178 KOG0615 Serine/threonine prote 99.1 1.5E-10 3.2E-15 132.6 6.7 113 132-245 44-167 (475)
179 COG3829 RocR Transcriptional r 99.1 7.1E-10 1.5E-14 131.5 11.8 201 945-1167 241-477 (560)
180 PRK07471 DNA polymerase III su 99.0 6.5E-09 1.4E-13 121.3 18.3 181 945-1158 15-236 (365)
181 COG1221 PspF Transcriptional r 99.0 4.9E-10 1.1E-14 130.7 8.9 204 945-1170 74-310 (403)
182 COG0714 MoxR-like ATPases [Gen 99.0 1.3E-09 2.8E-14 125.3 12.3 143 985-1132 44-203 (329)
183 COG2607 Predicted ATPase (AAA+ 99.0 1.6E-08 3.4E-13 109.7 18.8 193 945-1167 56-279 (287)
184 TIGR02030 BchI-ChlI magnesium 99.0 2.2E-09 4.7E-14 123.9 12.6 164 947-1131 2-218 (337)
185 TIGR00678 holB DNA polymerase 99.0 9.9E-09 2.1E-13 108.4 16.5 144 983-1153 13-184 (188)
186 PRK09087 hypothetical protein; 99.0 7.9E-09 1.7E-13 113.1 16.2 148 985-1164 45-198 (226)
187 cd00060 FHA Forkhead associate 99.0 1.9E-09 4.1E-14 101.4 9.8 97 134-234 1-101 (102)
188 COG3604 FhlA Transcriptional r 99.0 2.4E-09 5.2E-14 125.7 12.5 201 945-1169 219-456 (550)
189 TIGR02974 phageshock_pspF psp 99.0 3.3E-09 7.1E-14 122.2 13.1 176 985-1169 23-233 (329)
190 PRK11608 pspF phage shock prot 99.0 3.7E-09 7.9E-14 121.7 13.3 201 947-1168 4-239 (326)
191 PRK07399 DNA polymerase III su 99.0 8.3E-09 1.8E-13 118.2 15.9 182 947-1161 2-222 (314)
192 COG1219 ClpX ATP-dependent pro 99.0 2.4E-09 5.2E-14 119.5 11.0 112 951-1062 63-181 (408)
193 smart00382 AAA ATPases associa 99.0 5.2E-09 1.1E-13 100.7 11.9 127 985-1119 3-147 (148)
194 TIGR02442 Cob-chelat-sub cobal 99.0 2.3E-09 5E-14 133.3 11.7 167 947-1132 2-214 (633)
195 KOG1969 DNA replication checkp 99.0 1.1E-08 2.5E-13 123.7 16.7 173 982-1169 323-515 (877)
196 COG0593 DnaA ATPase involved i 98.9 2.8E-08 6E-13 116.5 18.3 171 984-1169 113-294 (408)
197 COG0542 clpA ATP-binding subun 98.9 1.2E-08 2.5E-13 126.9 15.8 180 947-1151 168-370 (786)
198 PRK15429 formate hydrogenlyase 98.9 1.2E-08 2.7E-13 128.1 16.4 202 946-1168 373-608 (686)
199 TIGR01817 nifA Nif-specific re 98.9 3.5E-09 7.7E-14 129.2 11.0 202 946-1168 193-427 (534)
200 PRK15424 propionate catabolism 98.9 7E-09 1.5E-13 126.2 13.2 202 946-1168 216-464 (538)
201 PF07728 AAA_5: AAA domain (dy 98.9 2.1E-10 4.6E-15 114.9 -0.3 112 986-1110 1-139 (139)
202 PRK05022 anaerobic nitric oxid 98.9 1.7E-08 3.7E-13 122.7 16.0 203 947-1170 185-421 (509)
203 TIGR02329 propionate_PrpR prop 98.9 7.2E-09 1.6E-13 126.0 12.1 202 946-1168 209-449 (526)
204 COG0470 HolB ATPase involved i 98.9 1.4E-08 3.1E-13 114.8 13.7 147 950-1127 2-176 (325)
205 COG2204 AtoC Response regulato 98.9 7.4E-09 1.6E-13 122.8 11.6 201 947-1169 139-374 (464)
206 PF07724 AAA_2: AAA domain (Cd 98.9 8.1E-09 1.8E-13 108.5 10.7 115 982-1099 1-130 (171)
207 PRK11331 5-methylcytosine-spec 98.9 2.1E-08 4.5E-13 118.7 15.2 143 948-1118 174-357 (459)
208 COG1474 CDC6 Cdc6-related prot 98.9 4.7E-08 1E-12 114.2 17.8 202 950-1175 18-251 (366)
209 PF01078 Mg_chelatase: Magnesi 98.9 8.4E-10 1.8E-14 118.5 3.1 46 947-1008 1-46 (206)
210 PRK08058 DNA polymerase III su 98.9 4.9E-08 1.1E-12 112.6 17.5 153 947-1129 3-179 (329)
211 COG1224 TIP49 DNA helicase TIP 98.9 4.6E-08 9.9E-13 110.9 16.6 73 1099-1172 342-415 (450)
212 PRK05707 DNA polymerase III su 98.9 4.1E-08 8.9E-13 113.2 16.8 157 982-1158 20-201 (328)
213 KOG0745 Putative ATP-dependent 98.9 3.2E-08 7E-13 114.2 15.3 72 985-1056 227-304 (564)
214 PRK10820 DNA-binding transcrip 98.9 1.6E-08 3.4E-13 123.3 13.7 201 945-1168 200-436 (520)
215 PF07726 AAA_3: ATPase family 98.8 1.3E-09 2.7E-14 109.0 3.1 118 986-1111 1-130 (131)
216 PRK04132 replication factor C 98.8 4E-08 8.6E-13 124.2 17.1 157 982-1161 562-732 (846)
217 KOG1051 Chaperone HSP104 and r 98.8 4.6E-07 9.9E-12 114.3 25.7 128 949-1098 562-710 (898)
218 PF06068 TIP49: TIP49 C-termin 98.8 9.6E-08 2.1E-12 109.9 18.1 104 1044-1165 279-395 (398)
219 PRK11388 DNA-binding transcrip 98.8 2.7E-08 5.9E-13 124.0 14.8 202 946-1168 322-553 (638)
220 smart00350 MCM minichromosome 98.8 9.3E-09 2E-13 125.0 10.0 174 950-1133 204-401 (509)
221 PF00158 Sigma54_activat: Sigm 98.7 1.1E-08 2.3E-13 107.4 5.9 140 951-1110 1-162 (168)
222 TIGR00368 Mg chelatase-related 98.7 5.5E-08 1.2E-12 117.6 12.4 153 946-1122 189-394 (499)
223 PRK13531 regulatory ATPase Rav 98.7 3.7E-08 8E-13 117.4 10.6 159 950-1130 21-192 (498)
224 TIGR02031 BchD-ChlD magnesium 98.7 6.8E-08 1.5E-12 119.3 13.2 142 984-1132 16-174 (589)
225 PRK06871 DNA polymerase III su 98.7 5.9E-07 1.3E-11 103.4 18.8 171 954-1158 7-201 (325)
226 TIGR02915 PEP_resp_reg putativ 98.7 6.4E-08 1.4E-12 115.2 11.3 200 948-1168 138-371 (445)
227 TIGR03015 pepcterm_ATPase puta 98.7 7.9E-07 1.7E-11 98.5 19.2 174 985-1172 44-249 (269)
228 TIGR00764 lon_rel lon-related 98.7 2.4E-07 5.2E-12 114.8 16.3 50 946-1011 15-64 (608)
229 KOG2035 Replication factor C, 98.7 6.3E-07 1.4E-11 99.1 17.6 185 946-1161 10-229 (351)
230 PF13177 DNA_pol3_delta2: DNA 98.7 2.2E-07 4.7E-12 96.8 13.1 133 953-1118 1-160 (162)
231 PRK07993 DNA polymerase III su 98.7 5.7E-07 1.2E-11 104.1 17.5 157 981-1158 21-202 (334)
232 PRK10923 glnG nitrogen regulat 98.6 3E-07 6.5E-12 110.3 14.6 200 948-1168 137-370 (469)
233 PF05621 TniB: Bacterial TniB 98.6 7.1E-07 1.5E-11 100.9 16.6 181 985-1176 62-276 (302)
234 COG1239 ChlI Mg-chelatase subu 98.6 3.2E-07 6.9E-12 106.9 14.1 169 946-1134 14-234 (423)
235 TIGR00602 rad24 checkpoint pro 98.6 6.9E-07 1.5E-11 110.6 17.9 194 945-1161 80-324 (637)
236 PRK08116 hypothetical protein; 98.6 3.3E-07 7.1E-12 103.0 13.5 161 936-1120 72-250 (268)
237 PRK08769 DNA polymerase III su 98.6 8.4E-07 1.8E-11 102.0 17.1 173 954-1161 9-209 (319)
238 COG1220 HslU ATP-dependent pro 98.6 2.7E-07 5.8E-12 104.1 11.6 85 1044-1129 251-346 (444)
239 PTZ00111 DNA replication licen 98.6 1.9E-07 4.2E-12 117.8 10.8 188 928-1133 438-658 (915)
240 PRK06964 DNA polymerase III su 98.6 1E-06 2.2E-11 102.2 15.8 133 982-1131 19-203 (342)
241 smart00763 AAA_PrkA PrkA AAA d 98.5 9.5E-07 2.1E-11 102.4 14.9 63 947-1017 48-118 (361)
242 PRK11361 acetoacetate metaboli 98.5 7.9E-07 1.7E-11 106.1 14.8 175 985-1168 167-375 (457)
243 PRK06090 DNA polymerase III su 98.5 2.6E-06 5.7E-11 97.9 17.6 147 954-1130 8-178 (319)
244 PRK12377 putative replication 98.5 7.2E-07 1.6E-11 99.2 12.4 151 933-1110 58-222 (248)
245 KOG1942 DNA helicase, TBP-inte 98.5 4E-06 8.6E-11 93.2 16.1 91 1043-1151 296-400 (456)
246 PRK07952 DNA replication prote 98.4 1.8E-06 3.9E-11 95.8 13.4 109 933-1055 56-174 (244)
247 PRK15115 response regulator Gl 98.4 2.5E-06 5.5E-11 101.6 14.9 172 985-1168 158-366 (444)
248 TIGR03354 VI_FHA type VI secre 98.4 4.1E-07 8.9E-12 107.3 7.8 82 146-232 18-103 (396)
249 KOG0990 Replication factor C, 98.4 1.2E-06 2.6E-11 98.7 9.9 158 945-1136 37-207 (360)
250 COG0606 Predicted ATPase with 98.4 1.6E-07 3.5E-12 110.6 3.2 48 945-1008 175-222 (490)
251 TIGR01818 ntrC nitrogen regula 98.4 1.6E-06 3.5E-11 103.7 11.4 202 950-1169 135-367 (463)
252 PRK09862 putative ATP-dependen 98.3 8.4E-07 1.8E-11 107.4 8.1 152 946-1121 188-390 (506)
253 PF01637 Arch_ATPase: Archaeal 98.3 3.3E-06 7.1E-11 90.1 11.2 180 952-1155 2-229 (234)
254 PRK08181 transposase; Validate 98.3 6.6E-06 1.4E-10 92.7 13.7 69 985-1055 107-179 (269)
255 KOG2227 Pre-initiation complex 98.3 2E-05 4.4E-10 92.7 17.7 196 950-1169 151-379 (529)
256 KOG1514 Origin recognition com 98.3 1.3E-05 2.9E-10 97.8 16.0 203 950-1174 397-633 (767)
257 PRK13765 ATP-dependent proteas 98.3 6.9E-06 1.5E-10 102.1 13.9 49 945-1009 27-75 (637)
258 PF03215 Rad17: Rad17 cell cyc 98.3 3E-05 6.4E-10 94.6 19.0 201 945-1170 15-269 (519)
259 PRK10365 transcriptional regul 98.2 1.1E-05 2.4E-10 95.9 14.6 172 985-1168 163-371 (441)
260 PRK08699 DNA polymerase III su 98.2 7E-06 1.5E-10 94.8 12.1 132 982-1130 19-183 (325)
261 PF14532 Sigma54_activ_2: Sigm 98.2 1.4E-06 3.1E-11 87.9 5.3 105 985-1119 22-136 (138)
262 COG1241 MCM2 Predicted ATPase 98.2 4.5E-06 9.8E-11 103.4 9.3 190 927-1134 273-485 (682)
263 PRK06835 DNA replication prote 98.1 8.7E-06 1.9E-10 94.2 10.5 111 985-1110 184-305 (329)
264 PF13173 AAA_14: AAA domain 98.1 8.6E-06 1.9E-10 81.2 9.1 118 985-1123 3-126 (128)
265 PRK08939 primosomal protein Dn 98.1 1.2E-05 2.5E-10 92.3 10.9 70 984-1055 156-229 (306)
266 KOG0478 DNA replication licens 98.1 2.1E-05 4.7E-10 95.5 13.3 175 950-1132 430-626 (804)
267 PF00004 AAA: ATPase family as 98.1 1.4E-05 3.1E-10 78.1 9.7 54 690-746 46-111 (132)
268 KOG2680 DNA helicase TIP49, TB 98.1 5.7E-05 1.2E-09 84.5 15.1 113 1043-1173 288-413 (454)
269 PRK06526 transposase; Provisio 98.1 6.5E-06 1.4E-10 92.0 7.6 70 984-1055 98-171 (254)
270 PF01695 IstB_IS21: IstB-like 98.1 4.2E-06 9.1E-11 88.7 5.8 69 984-1054 47-119 (178)
271 PRK13406 bchD magnesium chelat 98.1 6.5E-06 1.4E-10 101.6 8.3 131 985-1123 26-173 (584)
272 PF00493 MCM: MCM2/3/5 family 98.1 5.3E-07 1.1E-11 104.2 -1.5 171 950-1135 25-224 (331)
273 COG1484 DnaC DNA replication p 98.0 2.7E-05 5.9E-10 87.1 11.2 70 984-1055 105-179 (254)
274 COG3283 TyrR Transcriptional r 98.0 2.5E-05 5.4E-10 89.1 10.6 161 945-1126 200-377 (511)
275 PF13401 AAA_22: AAA domain; P 98.0 2.8E-05 6E-10 76.5 9.6 72 985-1056 5-100 (131)
276 PRK06921 hypothetical protein; 98.0 1.9E-05 4.2E-10 88.8 9.1 67 985-1054 118-188 (266)
277 PRK05917 DNA polymerase III su 98.0 0.00013 2.8E-09 83.0 15.6 121 982-1119 17-154 (290)
278 PF12774 AAA_6: Hydrolytic ATP 98.0 5.3E-05 1.2E-09 83.6 12.2 137 985-1137 33-182 (231)
279 smart00240 FHA Forkhead associ 98.0 1.2E-05 2.7E-10 67.2 5.4 50 154-207 1-52 (52)
280 PRK09183 transposase/IS protei 98.0 2.1E-05 4.7E-10 88.0 9.0 71 984-1055 102-176 (259)
281 PF12775 AAA_7: P-loop contain 98.0 2.2E-05 4.8E-10 88.6 9.1 139 985-1134 34-195 (272)
282 PLN02927 antheraxanthin epoxid 98.0 1.5E-05 3.2E-10 99.6 8.4 84 143-231 545-642 (668)
283 PF05729 NACHT: NACHT domain 97.9 0.00011 2.3E-09 74.6 12.2 140 986-1134 2-165 (166)
284 cd01120 RecA-like_NTPases RecA 97.9 5.6E-05 1.2E-09 75.9 10.0 71 987-1057 2-99 (165)
285 KOG0482 DNA replication licens 97.9 4.3E-05 9.3E-10 90.2 9.8 186 927-1132 329-539 (721)
286 PRK07276 DNA polymerase III su 97.9 0.0005 1.1E-08 78.4 17.8 122 982-1123 22-166 (290)
287 KOG0480 DNA replication licens 97.8 6.7E-05 1.4E-09 90.8 10.2 216 927-1166 332-571 (764)
288 PF00931 NB-ARC: NB-ARC domain 97.8 0.00021 4.5E-09 79.8 13.5 158 983-1162 18-203 (287)
289 PRK07132 DNA polymerase III su 97.8 0.00074 1.6E-08 77.4 17.6 143 983-1152 17-177 (299)
290 COG1716 FOG: FHA domain [Signa 97.7 0.00016 3.4E-09 76.5 9.7 75 147-228 84-159 (191)
291 KOG1970 Checkpoint RAD17-RFC c 97.7 0.0018 3.9E-08 77.9 19.2 201 946-1169 79-320 (634)
292 KOG0744 AAA+-type ATPase [Post 97.7 2.7E-05 5.8E-10 88.0 3.8 75 442-521 130-204 (423)
293 PRK05818 DNA polymerase III su 97.7 0.00057 1.2E-08 76.6 13.9 121 982-1119 5-147 (261)
294 COG3284 AcoR Transcriptional a 97.7 7.4E-05 1.6E-09 91.0 7.2 172 985-1168 337-539 (606)
295 COG4650 RtcR Sigma54-dependent 97.6 8.3E-05 1.8E-09 82.8 6.3 136 985-1126 209-366 (531)
296 COG1618 Predicted nucleotide k 97.6 0.00067 1.4E-08 70.7 11.9 25 984-1008 5-29 (179)
297 KOG0742 AAA+-type ATPase [Post 97.5 0.00029 6.3E-09 81.7 9.3 179 645-874 386-587 (630)
298 COG5271 MDN1 AAA ATPase contai 97.5 0.00058 1.3E-08 88.6 12.5 138 985-1133 1544-1704(4600)
299 KOG0477 DNA replication licens 97.5 0.00016 3.5E-09 87.2 7.2 168 927-1116 436-629 (854)
300 KOG1968 Replication factor C, 97.5 0.00017 3.7E-09 92.1 7.9 163 987-1168 360-535 (871)
301 PLN03210 Resistant to P. syrin 97.5 0.0015 3.3E-08 87.3 16.6 173 946-1154 181-389 (1153)
302 PF03969 AFG1_ATPase: AFG1-lik 97.4 0.0011 2.3E-08 78.0 12.1 102 981-1098 59-167 (362)
303 KOG1881 Anion exchanger adapto 97.4 0.0006 1.3E-08 83.5 10.0 88 151-241 176-272 (793)
304 PHA00729 NTP-binding motif con 97.4 0.00033 7.1E-09 77.1 7.0 28 985-1012 18-45 (226)
305 KOG2170 ATPase of the AAA+ sup 97.4 0.003 6.6E-08 71.5 14.3 130 950-1098 83-224 (344)
306 cd01124 KaiC KaiC is a circadi 97.3 0.0011 2.4E-08 69.3 10.4 70 987-1056 2-108 (187)
307 KOG2228 Origin recognition com 97.3 0.0013 2.9E-08 75.2 11.0 161 950-1132 25-219 (408)
308 COG3267 ExeA Type II secretory 97.3 0.0061 1.3E-07 67.9 15.9 175 986-1172 53-256 (269)
309 TIGR02237 recomb_radB DNA repa 97.3 0.0011 2.3E-08 71.3 9.6 74 984-1057 12-111 (209)
310 PF00910 RNA_helicase: RNA hel 97.3 0.0003 6.5E-09 68.4 4.9 23 987-1009 1-23 (107)
311 KOG0481 DNA replication licens 97.2 0.0021 4.6E-08 76.5 12.0 176 950-1132 332-528 (729)
312 TIGR01618 phage_P_loop phage n 97.2 0.0008 1.7E-08 73.9 8.0 75 981-1057 9-95 (220)
313 TIGR00763 lon ATP-dependent pr 97.2 0.0043 9.4E-08 79.8 15.9 33 493-527 348-380 (775)
314 PF13207 AAA_17: AAA domain; P 97.1 0.00039 8.5E-09 67.7 4.1 31 987-1017 2-32 (121)
315 KOG0479 DNA replication licens 97.1 0.0014 3.1E-08 78.9 9.4 172 950-1133 302-499 (818)
316 PF05707 Zot: Zonular occluden 97.1 0.00071 1.5E-08 72.5 6.3 123 987-1119 3-146 (193)
317 COG3456 Predicted component of 97.1 0.00065 1.4E-08 79.3 5.8 75 150-234 24-101 (430)
318 PF14516 AAA_35: AAA-like doma 97.1 0.011 2.3E-07 68.8 15.5 163 983-1154 30-233 (331)
319 PRK11823 DNA repair protein Ra 97.0 0.0034 7.3E-08 75.9 11.1 97 983-1079 79-194 (446)
320 cd01121 Sms Sms (bacterial rad 97.0 0.0032 7E-08 74.3 10.6 97 983-1079 81-196 (372)
321 PRK08118 topology modulation p 97.0 0.0015 3.3E-08 68.6 7.1 33 985-1017 2-34 (167)
322 KOG1051 Chaperone HSP104 and r 97.0 0.0057 1.2E-07 78.3 13.3 139 985-1134 209-365 (898)
323 PRK04841 transcriptional regul 96.9 0.019 4.1E-07 74.5 17.7 152 985-1154 33-219 (903)
324 COG1373 Predicted ATPase (AAA+ 96.9 0.0085 1.8E-07 71.5 13.0 121 986-1126 39-161 (398)
325 PF13191 AAA_16: AAA ATPase do 96.9 0.0025 5.5E-08 66.1 7.6 59 951-1020 2-63 (185)
326 PRK07261 topology modulation p 96.9 0.0023 5E-08 67.4 7.3 32 986-1017 2-33 (171)
327 PRK15455 PrkA family serine pr 96.9 0.0014 3.1E-08 80.1 6.3 63 947-1017 74-137 (644)
328 TIGR02012 tigrfam_recA protein 96.8 0.0078 1.7E-07 69.7 11.8 75 984-1058 55-148 (321)
329 PHA02624 large T antigen; Prov 96.8 0.0043 9.2E-08 76.4 10.0 119 985-1118 432-561 (647)
330 PRK09361 radB DNA repair and r 96.8 0.0047 1E-07 67.2 9.5 36 983-1018 22-60 (225)
331 PF03266 NTPase_1: NTPase; In 96.8 0.00072 1.6E-08 71.3 2.9 23 986-1008 1-23 (168)
332 PRK00131 aroK shikimate kinase 96.8 0.0012 2.7E-08 67.9 4.5 34 983-1016 3-36 (175)
333 cd01129 PulE-GspE PulE/GspE Th 96.8 0.0051 1.1E-07 69.4 9.4 93 946-1053 57-159 (264)
334 CHL00181 cbbX CbbX; Provisiona 96.8 0.0082 1.8E-07 68.6 11.1 127 706-885 124-260 (287)
335 PRK08533 flagellar accessory p 96.7 0.012 2.6E-07 65.0 11.7 74 983-1056 23-130 (230)
336 PRK04296 thymidine kinase; Pro 96.7 0.015 3.4E-07 62.2 12.0 69 986-1055 4-90 (190)
337 PRK13695 putative NTPase; Prov 96.6 0.013 2.8E-07 61.5 10.7 23 986-1008 2-24 (174)
338 cd00983 recA RecA is a bacter 96.6 0.012 2.7E-07 68.2 11.4 74 985-1058 56-148 (325)
339 cd01131 PilT Pilus retraction 96.6 0.004 8.7E-08 67.0 7.0 68 986-1053 3-84 (198)
340 PF13671 AAA_33: AAA domain; P 96.6 0.0042 9E-08 62.1 6.2 27 987-1013 2-28 (143)
341 PRK09376 rho transcription ter 96.5 0.015 3.3E-07 68.8 11.4 24 986-1009 171-194 (416)
342 cd01394 radB RadB. The archaea 96.5 0.019 4.1E-07 62.2 11.3 34 985-1018 20-56 (218)
343 TIGR02688 conserved hypothetic 96.5 0.0071 1.5E-07 72.0 8.5 59 985-1055 210-272 (449)
344 PRK00080 ruvB Holliday junctio 96.5 0.024 5.1E-07 65.7 12.8 59 452-524 23-81 (328)
345 COG5271 MDN1 AAA ATPase contai 96.5 0.006 1.3E-07 79.9 8.1 136 986-1132 890-1047(4600)
346 PF07693 KAP_NTPase: KAP famil 96.5 0.26 5.7E-06 56.3 21.0 111 1043-1167 172-320 (325)
347 PF13604 AAA_30: AAA domain; P 96.5 0.038 8.3E-07 59.5 13.3 33 985-1017 19-54 (196)
348 PRK03839 putative kinase; Prov 96.5 0.0025 5.3E-08 67.1 4.0 31 986-1016 2-32 (180)
349 PHA02774 E1; Provisional 96.5 0.023 4.9E-07 70.0 12.6 129 985-1140 435-589 (613)
350 PRK13947 shikimate kinase; Pro 96.5 0.0027 5.8E-08 65.9 4.2 31 986-1016 3-33 (171)
351 COG5245 DYN1 Dynein, heavy cha 96.4 0.028 6E-07 73.7 13.1 138 984-1134 1494-1660(3164)
352 PF04665 Pox_A32: Poxvirus A32 96.4 0.059 1.3E-06 60.2 14.3 132 983-1131 12-169 (241)
353 cd00464 SK Shikimate kinase (S 96.4 0.0033 7.1E-08 63.7 4.1 31 986-1016 1-31 (154)
354 PRK06581 DNA polymerase III su 96.4 0.13 2.8E-06 57.5 16.5 132 984-1134 15-163 (263)
355 cd00544 CobU Adenosylcobinamid 96.4 0.019 4E-07 60.8 9.8 71 987-1059 2-89 (169)
356 cd03283 ABC_MutS-like MutS-lik 96.3 0.023 5E-07 61.5 10.7 69 985-1053 26-115 (199)
357 PRK00625 shikimate kinase; Pro 96.3 0.0037 8.1E-08 66.2 4.2 31 986-1016 2-32 (173)
358 PRK12723 flagellar biosynthesi 96.3 0.076 1.6E-06 63.3 15.5 160 984-1157 174-374 (388)
359 PRK08233 hypothetical protein; 96.3 0.032 7E-07 58.1 11.0 32 985-1016 4-36 (182)
360 PRK14974 cell division protein 96.3 0.036 7.8E-07 64.8 12.3 35 984-1018 140-177 (336)
361 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.031 6.7E-07 61.8 11.3 39 978-1017 16-57 (237)
362 PF00437 T2SE: Type II/IV secr 96.2 0.0077 1.7E-07 67.5 6.6 96 946-1053 101-207 (270)
363 COG3854 SpoIIIAA ncharacterize 96.2 0.024 5.2E-07 62.5 9.9 71 985-1055 138-230 (308)
364 cd01128 rho_factor Transcripti 96.2 0.034 7.4E-07 62.4 11.4 26 985-1010 17-42 (249)
365 PRK13948 shikimate kinase; Pro 96.2 0.005 1.1E-07 65.8 4.6 36 981-1016 7-42 (182)
366 TIGR00416 sms DNA repair prote 96.2 0.023 5.1E-07 68.9 10.9 75 983-1057 93-184 (454)
367 PRK14532 adenylate kinase; Pro 96.2 0.0042 9.2E-08 65.7 4.1 30 986-1015 2-31 (188)
368 TIGR01359 UMP_CMP_kin_fam UMP- 96.2 0.0043 9.4E-08 65.0 4.0 29 987-1015 2-30 (183)
369 PRK10536 hypothetical protein; 96.2 0.022 4.7E-07 64.1 9.6 22 986-1007 76-97 (262)
370 PRK13949 shikimate kinase; Pro 96.2 0.0044 9.4E-08 65.3 3.9 32 985-1016 2-33 (169)
371 PRK05800 cobU adenosylcobinami 96.2 0.019 4.2E-07 60.7 8.8 68 986-1057 3-90 (170)
372 cd00984 DnaB_C DnaB helicase C 96.2 0.038 8.2E-07 60.6 11.4 36 982-1017 11-50 (242)
373 TIGR02881 spore_V_K stage V sp 96.2 0.037 7.9E-07 62.1 11.5 33 484-518 34-66 (261)
374 TIGR02858 spore_III_AA stage I 96.2 0.012 2.5E-07 66.9 7.5 69 985-1053 112-204 (270)
375 PRK14722 flhF flagellar biosyn 96.2 0.015 3.3E-07 68.6 8.8 108 985-1106 138-266 (374)
376 PF06309 Torsin: Torsin; Inte 96.2 0.021 4.5E-07 57.8 8.4 52 950-1008 26-77 (127)
377 KOG3347 Predicted nucleotide k 96.1 0.0043 9.3E-08 64.0 3.6 32 985-1016 8-39 (176)
378 KOG2543 Origin recognition com 96.1 0.045 9.8E-07 64.1 12.1 59 950-1019 7-65 (438)
379 PRK06217 hypothetical protein; 96.1 0.0051 1.1E-07 65.1 4.3 31 986-1016 3-33 (183)
380 PRK09354 recA recombinase A; P 96.1 0.039 8.5E-07 64.7 11.8 73 985-1057 61-152 (349)
381 COG0563 Adk Adenylate kinase a 96.1 0.023 5E-07 60.6 9.2 29 986-1014 2-30 (178)
382 TIGR02525 plasmid_TraJ plasmid 96.1 0.017 3.6E-07 68.3 8.8 68 986-1053 151-235 (372)
383 PF06745 KaiC: KaiC; InterPro 96.1 0.069 1.5E-06 58.2 13.0 73 983-1055 18-127 (226)
384 TIGR02533 type_II_gspE general 96.1 0.021 4.5E-07 69.9 9.8 94 945-1053 218-321 (486)
385 PRK06067 flagellar accessory p 96.1 0.051 1.1E-06 59.7 12.0 35 983-1017 24-61 (234)
386 COG1485 Predicted ATPase [Gene 96.1 0.056 1.2E-06 62.9 12.5 98 981-1098 62-170 (367)
387 PRK14531 adenylate kinase; Pro 96.1 0.006 1.3E-07 64.7 4.4 31 985-1015 3-33 (183)
388 TIGR02880 cbbX_cfxQ probable R 96.1 0.039 8.4E-07 63.0 11.1 26 492-519 58-83 (284)
389 cd02020 CMPK Cytidine monophos 96.0 0.0058 1.3E-07 61.2 3.9 30 987-1016 2-31 (147)
390 TIGR01420 pilT_fam pilus retra 96.0 0.013 2.8E-07 68.5 7.3 69 985-1053 123-205 (343)
391 PRK06762 hypothetical protein; 96.0 0.015 3.3E-07 60.1 7.1 36 985-1020 3-38 (166)
392 cd01123 Rad51_DMC1_radA Rad51_ 96.0 0.028 6.1E-07 61.3 9.5 36 984-1019 19-63 (235)
393 cd00046 DEXDc DEAD-like helica 96.0 0.012 2.7E-07 56.5 6.0 23 986-1008 2-24 (144)
394 cd01428 ADK Adenylate kinase ( 96.0 0.0058 1.2E-07 64.4 3.9 29 987-1015 2-30 (194)
395 PRK05973 replicative DNA helic 96.0 0.049 1.1E-06 60.7 11.2 36 982-1017 62-100 (237)
396 cd01122 GP4d_helicase GP4d_hel 96.0 0.052 1.1E-06 60.7 11.5 35 983-1017 29-67 (271)
397 cd01393 recA_like RecA is a b 96.0 0.039 8.4E-07 59.9 10.2 37 983-1019 18-63 (226)
398 cd02021 GntK Gluconate kinase 96.0 0.0065 1.4E-07 61.7 3.9 29 987-1015 2-30 (150)
399 PRK10436 hypothetical protein; 95.9 0.024 5.1E-07 68.9 9.2 94 945-1053 194-297 (462)
400 PRK13764 ATPase; Provisional 95.9 0.02 4.2E-07 71.4 8.7 68 985-1053 258-334 (602)
401 COG2804 PulE Type II secretory 95.9 0.024 5.2E-07 68.6 9.0 95 943-1053 232-337 (500)
402 PRK14530 adenylate kinase; Pro 95.9 0.0074 1.6E-07 65.6 4.3 30 986-1015 5-34 (215)
403 PRK00771 signal recognition pa 95.9 0.075 1.6E-06 64.2 13.1 37 983-1019 94-133 (437)
404 PF10236 DAP3: Mitochondrial r 95.9 0.36 7.8E-06 55.9 18.0 116 1043-1159 156-307 (309)
405 TIGR02782 TrbB_P P-type conjug 95.9 0.029 6.2E-07 64.5 9.0 69 985-1053 133-214 (299)
406 TIGR03878 thermo_KaiC_2 KaiC d 95.8 0.071 1.5E-06 60.0 11.7 35 983-1017 35-72 (259)
407 COG0703 AroK Shikimate kinase 95.8 0.0073 1.6E-07 64.0 3.5 32 985-1016 3-34 (172)
408 PTZ00088 adenylate kinase 1; P 95.8 0.0085 1.9E-07 66.3 4.2 32 985-1016 7-38 (229)
409 smart00534 MUTSac ATPase domai 95.8 0.085 1.8E-06 56.2 11.6 19 987-1005 2-20 (185)
410 TIGR02538 type_IV_pilB type IV 95.8 0.028 6E-07 70.0 9.0 94 945-1053 292-395 (564)
411 cd03243 ABC_MutS_homologs The 95.7 0.064 1.4E-06 57.7 10.6 21 985-1005 30-50 (202)
412 PF13479 AAA_24: AAA domain 95.7 0.037 8.1E-07 60.3 8.9 68 985-1056 4-81 (213)
413 smart00487 DEXDc DEAD-like hel 95.7 0.057 1.2E-06 55.3 9.8 24 985-1008 25-49 (201)
414 cd03280 ABC_MutS2 MutS2 homolo 95.7 0.074 1.6E-06 57.2 11.0 21 985-1005 29-49 (200)
415 cd03281 ABC_MSH5_euk MutS5 hom 95.7 0.091 2E-06 57.5 11.8 22 985-1006 30-51 (213)
416 TIGR01313 therm_gnt_kin carboh 95.7 0.0079 1.7E-07 62.0 3.4 28 987-1014 1-28 (163)
417 PRK03731 aroL shikimate kinase 95.7 0.011 2.3E-07 61.5 4.4 32 985-1016 3-34 (171)
418 KOG2383 Predicted ATPase [Gene 95.7 0.04 8.6E-07 64.8 9.2 28 981-1008 111-138 (467)
419 TIGR03574 selen_PSTK L-seryl-t 95.7 0.043 9.2E-07 61.0 9.1 34 987-1020 2-38 (249)
420 KOG3928 Mitochondrial ribosome 95.6 0.26 5.6E-06 58.4 15.6 114 1044-1163 316-458 (461)
421 cd00227 CPT Chloramphenicol (C 95.6 0.0094 2E-07 62.6 3.7 35 985-1019 3-37 (175)
422 PRK13900 type IV secretion sys 95.6 0.034 7.5E-07 64.8 8.4 69 985-1053 161-245 (332)
423 PRK14528 adenylate kinase; Pro 95.6 0.012 2.5E-07 62.9 4.2 31 985-1015 2-32 (186)
424 TIGR01360 aden_kin_iso1 adenyl 95.6 0.012 2.6E-07 61.6 4.2 31 985-1015 4-34 (188)
425 PRK02496 adk adenylate kinase; 95.6 0.011 2.4E-07 62.3 4.0 30 986-1015 3-32 (184)
426 PF09848 DUF2075: Uncharacteri 95.6 0.03 6.6E-07 65.5 7.9 23 986-1008 3-25 (352)
427 COG4088 Predicted nucleotide k 95.6 0.047 1E-06 59.3 8.5 23 986-1008 3-25 (261)
428 PRK04328 hypothetical protein; 95.5 0.11 2.3E-06 58.2 11.8 35 982-1016 21-58 (249)
429 PF00448 SRP54: SRP54-type pro 95.5 0.13 2.7E-06 55.8 11.9 129 984-1124 1-155 (196)
430 PRK13946 shikimate kinase; Pro 95.5 0.011 2.5E-07 62.7 3.8 32 985-1016 11-42 (184)
431 PRK06547 hypothetical protein; 95.5 0.014 3E-07 61.8 4.4 34 983-1016 14-47 (172)
432 cd02027 APSK Adenosine 5'-phos 95.5 0.033 7.2E-07 57.3 7.0 33 987-1019 2-37 (149)
433 COG4619 ABC-type uncharacteriz 95.5 0.054 1.2E-06 57.3 8.5 26 983-1008 28-53 (223)
434 PLN02200 adenylate kinase fami 95.5 0.015 3.2E-07 64.6 4.6 37 983-1021 42-78 (234)
435 PRK05057 aroK shikimate kinase 95.5 0.014 3.1E-07 61.5 4.3 33 985-1017 5-37 (172)
436 TIGR00064 ftsY signal recognit 95.4 0.37 8.1E-06 54.8 15.8 36 983-1018 71-109 (272)
437 TIGR01351 adk adenylate kinase 95.4 0.013 2.7E-07 63.5 3.9 29 987-1015 2-30 (210)
438 cd01130 VirB11-like_ATPase Typ 95.4 0.035 7.5E-07 59.1 7.1 69 985-1053 26-110 (186)
439 PRK00279 adk adenylate kinase; 95.4 0.014 3E-07 63.4 4.2 30 986-1015 2-31 (215)
440 KOG0245 Kinesin-like protein [ 95.4 0.034 7.4E-07 70.8 7.9 80 151-237 476-558 (1221)
441 PRK08154 anaerobic benzoate ca 95.4 0.024 5.3E-07 65.3 6.3 36 981-1016 130-165 (309)
442 PRK10416 signal recognition pa 95.3 0.35 7.5E-06 56.3 15.3 35 983-1017 113-150 (318)
443 TIGR03880 KaiC_arch_3 KaiC dom 95.3 0.14 3.1E-06 55.8 11.5 36 983-1018 15-53 (224)
444 PF13481 AAA_25: AAA domain; P 95.3 0.086 1.9E-06 55.6 9.4 73 986-1058 34-156 (193)
445 PF13238 AAA_18: AAA domain; P 95.2 0.015 3.3E-07 56.5 3.3 22 987-1008 1-22 (129)
446 COG1102 Cmk Cytidylate kinase 95.2 0.017 3.6E-07 60.6 3.6 29 986-1014 2-30 (179)
447 cd03216 ABC_Carb_Monos_I This 95.2 0.085 1.8E-06 55.0 8.9 71 983-1053 25-110 (163)
448 PF05272 VirE: Virulence-assoc 95.1 0.041 8.8E-07 59.7 6.6 112 985-1118 53-169 (198)
449 PRK14730 coaE dephospho-CoA ki 95.1 0.066 1.4E-06 57.8 8.1 31 986-1016 3-33 (195)
450 cd03115 SRP The signal recogni 95.1 0.082 1.8E-06 55.2 8.5 32 987-1018 3-37 (173)
451 PRK00149 dnaA chromosomal repl 95.1 0.048 1E-06 66.0 7.7 57 449-519 117-173 (450)
452 PRK11889 flhF flagellar biosyn 95.1 0.34 7.4E-06 57.9 14.3 72 984-1055 241-332 (436)
453 TIGR00635 ruvB Holliday juncti 95.1 0.12 2.5E-06 58.9 10.4 33 492-526 30-62 (305)
454 COG1066 Sms Predicted ATP-depe 95.1 0.16 3.5E-06 60.2 11.4 96 983-1078 92-205 (456)
455 COG2805 PilT Tfp pilus assembl 95.0 0.053 1.1E-06 61.9 7.2 70 985-1054 125-209 (353)
456 PRK14527 adenylate kinase; Pro 95.0 0.021 4.5E-07 60.9 3.8 31 985-1015 7-37 (191)
457 TIGR00767 rho transcription te 95.0 0.07 1.5E-06 63.5 8.4 25 985-1009 169-193 (415)
458 PRK04040 adenylate kinase; Pro 95.0 0.025 5.5E-07 60.7 4.4 30 985-1014 3-34 (188)
459 TIGR02788 VirB11 P-type DNA tr 95.0 0.037 8E-07 63.8 6.1 70 984-1053 144-228 (308)
460 PRK04182 cytidylate kinase; Pr 95.0 0.023 5E-07 59.0 4.0 29 986-1014 2-30 (180)
461 TIGR03881 KaiC_arch_4 KaiC dom 95.0 0.2 4.4E-06 54.7 11.5 36 982-1017 18-56 (229)
462 PRK13833 conjugal transfer pro 95.0 0.048 1E-06 63.4 6.9 69 985-1053 145-225 (323)
463 COG2909 MalT ATP-dependent tra 94.9 0.26 5.7E-06 62.8 13.6 158 985-1161 38-235 (894)
464 PF06414 Zeta_toxin: Zeta toxi 94.9 0.07 1.5E-06 57.4 7.7 40 983-1022 14-54 (199)
465 PRK13894 conjugal transfer ATP 94.9 0.05 1.1E-06 63.2 7.0 69 985-1053 149-229 (319)
466 PRK13851 type IV secretion sys 94.9 0.035 7.6E-07 65.1 5.6 69 985-1053 163-246 (344)
467 PLN02674 adenylate kinase 94.9 0.025 5.5E-07 63.2 4.3 33 983-1015 30-62 (244)
468 PRK09519 recA DNA recombinatio 94.9 0.16 3.4E-06 65.2 11.6 75 983-1057 59-152 (790)
469 PF00406 ADK: Adenylate kinase 94.8 0.024 5.2E-07 58.0 3.7 32 989-1022 1-32 (151)
470 TIGR02655 circ_KaiC circadian 94.8 0.14 3E-06 62.7 10.8 74 983-1056 262-366 (484)
471 PRK01184 hypothetical protein; 94.8 0.025 5.5E-07 59.6 3.9 29 986-1015 3-31 (184)
472 TIGR02173 cyt_kin_arch cytidyl 94.8 0.027 5.9E-07 58.0 4.0 29 987-1015 3-31 (171)
473 PRK04301 radA DNA repair and r 94.8 0.15 3.3E-06 58.9 10.4 35 985-1019 103-146 (317)
474 PRK06696 uridine kinase; Valid 94.8 0.032 7E-07 61.0 4.7 37 985-1021 23-62 (223)
475 cd03238 ABC_UvrA The excision 94.8 0.38 8.3E-06 51.3 12.6 25 983-1007 20-44 (176)
476 TIGR01448 recD_rel helicase, p 94.8 0.13 2.9E-06 65.9 10.8 70 986-1055 340-428 (720)
477 cd00267 ABC_ATPase ABC (ATP-bi 94.8 0.13 2.8E-06 52.9 8.8 26 983-1008 24-49 (157)
478 COG1855 ATPase (PilT family) [ 94.7 0.031 6.6E-07 66.4 4.5 45 945-1008 243-287 (604)
479 COG1936 Predicted nucleotide k 94.7 0.022 4.8E-07 60.3 3.0 30 986-1016 2-31 (180)
480 PF13521 AAA_28: AAA domain; P 94.7 0.029 6.3E-07 58.0 3.8 27 987-1014 2-28 (163)
481 PF01745 IPT: Isopentenyl tran 94.6 0.034 7.3E-07 60.9 4.3 35 987-1021 4-38 (233)
482 cd01125 repA Hexameric Replica 94.6 0.51 1.1E-05 52.2 13.7 21 987-1007 4-24 (239)
483 TIGR02524 dot_icm_DotB Dot/Icm 94.6 0.096 2.1E-06 61.8 8.3 69 985-1053 135-222 (358)
484 PRK12724 flagellar biosynthesi 94.6 0.33 7.2E-06 58.3 12.8 34 985-1018 224-261 (432)
485 TIGR02236 recomb_radA DNA repa 94.6 0.19 4E-06 57.8 10.5 35 985-1019 96-139 (310)
486 PF13086 AAA_11: AAA domain; P 94.6 0.027 5.8E-07 60.2 3.4 22 987-1008 20-41 (236)
487 PF08423 Rad51: Rad51; InterP 94.6 0.089 1.9E-06 59.2 7.6 108 987-1096 41-185 (256)
488 cd03227 ABC_Class2 ABC-type Cl 94.6 0.31 6.7E-06 50.8 11.1 22 985-1006 22-43 (162)
489 PRK14526 adenylate kinase; Pro 94.6 0.034 7.4E-07 60.8 4.2 29 986-1014 2-30 (211)
490 TIGR03499 FlhF flagellar biosy 94.5 0.19 4.2E-06 57.3 10.4 36 984-1019 194-234 (282)
491 PHA02530 pseT polynucleotide k 94.5 0.032 6.9E-07 63.3 4.1 31 985-1015 3-34 (300)
492 PF01583 APS_kinase: Adenylyls 94.5 0.069 1.5E-06 56.0 6.2 37 985-1021 3-42 (156)
493 PF08433 KTI12: Chromatin asso 94.5 0.07 1.5E-06 60.6 6.6 69 987-1055 4-82 (270)
494 TIGR01425 SRP54_euk signal rec 94.5 0.43 9.4E-06 57.6 13.5 73 983-1055 99-194 (429)
495 cd03287 ABC_MSH3_euk MutS3 hom 94.4 0.3 6.6E-06 54.0 11.3 22 985-1006 32-53 (222)
496 PF05970 PIF1: PIF1-like helic 94.4 0.15 3.2E-06 60.2 9.3 25 984-1008 22-46 (364)
497 PRK00889 adenylylsulfate kinas 94.4 0.14 3E-06 53.7 8.1 35 985-1019 5-42 (175)
498 cd03282 ABC_MSH4_euk MutS4 hom 94.4 0.29 6.2E-06 53.4 10.8 21 985-1005 30-50 (204)
499 PRK10263 DNA translocase FtsK; 94.4 0.36 7.9E-06 64.3 13.3 75 1045-1130 1142-1218(1355)
500 PRK12608 transcription termina 94.3 0.11 2.3E-06 61.6 7.7 24 985-1008 134-157 (380)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-63 Score=571.04 Aligned_cols=507 Identities=32% Similarity=0.477 Sum_probs=406.4
Q ss_pred CCccccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 001031 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1183)
Q Consensus 446 ~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLil 525 (1183)
....+|+|..+--. +.|-.-|..-. .|++|+++-.|+--.+ .+.+||-|||| -...+||.|+|.++++++|-+
T Consensus 182 ~~~snv~f~diGG~--d~~~~el~~li-~~i~~Pe~~~~lGv~P--prGvLlHGPPG--CGKT~lA~AiAgel~vPf~~i 254 (802)
T KOG0733|consen 182 FPESNVSFSDIGGL--DKTLAELCELI-IHIKHPEVFSSLGVRP--PRGVLLHGPPG--CGKTSLANAIAGELGVPFLSI 254 (802)
T ss_pred CCCCCcchhhccCh--HHHHHHHHHHH-HHhcCchhHhhcCCCC--CCceeeeCCCC--ccHHHHHHHHhhhcCCceEee
Confidence 45668899998876 55555555544 4899999844433333 47899999999 789999999999999999987
Q ss_pred ecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCce
Q 001031 526 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 605 (1183)
Q Consensus 526 Ds~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 605 (1183)
-...+-+|.+.|+|.
T Consensus 255 sApeivSGvSGESEk----------------------------------------------------------------- 269 (802)
T KOG0733|consen 255 SAPEIVSGVSGESEK----------------------------------------------------------------- 269 (802)
T ss_pred cchhhhcccCcccHH-----------------------------------------------------------------
Confidence 766555555433311
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchh
Q 001031 606 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 685 (1183)
Q Consensus 606 k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~ 685 (1183)
T Consensus 270 -------------------------------------------------------------------------------- 269 (802)
T KOG0733|consen 270 -------------------------------------------------------------------------------- 269 (802)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEEcChhhhhc----CChhhHHHHHHHHhcC----C------CCEEEEEeccCCCccc
Q 001031 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLT----GNNDAYGALKSKLENL----P------SNVVVIGSHTQLDSRK 751 (1183)
Q Consensus 686 ~k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~----~~~~~~~~i~~~L~~L----~------g~vivIgs~~~~d~~k 751 (1183)
.|++||+-+.+ ..|.||||+|||-.-+ .+.++-..||+.|... . .+||||||||
T Consensus 270 ---kiRelF~~A~~---~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATn------ 337 (802)
T KOG0733|consen 270 ---KIRELFDQAKS---NAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATN------ 337 (802)
T ss_pred ---HHHHHHHHHhc---cCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCC------
Confidence 16777777777 8999999999999665 3556666677766554 1 3899999999
Q ss_pred ccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhh
Q 001031 752 EKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVET 829 (1183)
Q Consensus 752 ~k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd 829 (1183)
+||++|+ |||| ||++++.+..|+
T Consensus 338 ------------------------RPDslDp-------------------------------aLRRaGRFdrEI~l~vP~ 362 (802)
T KOG0733|consen 338 ------------------------RPDSLDP-------------------------------ALRRAGRFDREICLGVPS 362 (802)
T ss_pred ------------------------CCcccCH-------------------------------HHhccccccceeeecCCc
Confidence 8899998 9999 999999999999
Q ss_pred hhhccchhHHHHH-hhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCC-CCcceec-----------
Q 001031 830 LKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKIS----------- 896 (1183)
Q Consensus 830 ~~gR~~Il~IHT~-l~~~~l~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~-~~kl~Id----------- 896 (1183)
...|.+||+|.-+ |+-.+ +.+...||.+|.||-||||.+||.+|+..|+.|..++... ..+..+.
T Consensus 363 e~aR~~IL~~~~~~lrl~g--~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d 440 (802)
T KOG0733|consen 363 ETAREEILRIICRGLRLSG--DFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEED 440 (802)
T ss_pred hHHHHHHHHHHHhhCCCCC--CcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccch
Confidence 9999999999876 66555 7889999999999999999999999999999998664331 1111111
Q ss_pred ccchhhhHH-----HHH----h-hhhhhhhhhhhhhc--ccChhHHHHHHhcCCCCCC-------CCCCCcccccCcHHH
Q 001031 897 TESIMYGLN-----ILQ----G-IQSESKSLKKSLKD--VVTENEFEKKLLADVIPPS-------DIGVTFDDIGALENV 957 (1183)
Q Consensus 897 ~~sIkv~~~-----dF~----~-al~eikp~~~slk~--~v~~~E~ek~ll~~iIp~~-------e~~~tfdDI~Gle~v 957 (1183)
..+|+.... ++. . .++...+....... .+..++|++.+- .+-|.. -++++|+|||+++++
T Consensus 441 ~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~-~iQPSakREGF~tVPdVtW~dIGaL~~v 519 (802)
T KOG0733|consen 441 QSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALS-KIQPSAKREGFATVPDVTWDDIGALEEV 519 (802)
T ss_pred hhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHH-hcCcchhcccceecCCCChhhcccHHHH
Confidence 111210000 000 0 01111111111111 133455665532 121211 247899999999999
Q ss_pred HHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHH
Q 001031 958 KDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFS 1037 (1183)
Q Consensus 958 k~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~GesE~~Ir~lF~ 1037 (1183)
+.+|..+|.+|+++|++|...++.. |.|||||||||||||.||+|+|++.+.+|+.+.+++|+++|+|++|..++++|.
T Consensus 520 R~eL~~aI~~PiK~pd~~k~lGi~~-PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFq 598 (802)
T KOG0733|consen 520 RLELNMAILAPIKRPDLFKALGIDA-PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQ 598 (802)
T ss_pred HHHHHHHHhhhccCHHHHHHhCCCC-CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHH
Confidence 9999999999999999999999765 589999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHh--ccCcEEE
Q 001031 1038 LASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLM 1115 (1183)
Q Consensus 1038 ~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RFd~vI~ 1115 (1183)
.|+...|||||+||||.|.++|.... .....+++++|+.+|||+..+ ..|.|||+||+|+.+|++++| ||++.++
T Consensus 599 RAR~saPCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~R--~gV~viaATNRPDiIDpAiLRPGRlDk~Ly 675 (802)
T KOG0733|consen 599 RARASAPCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEER--RGVYVIAATNRPDIIDPAILRPGRLDKLLY 675 (802)
T ss_pred HhhcCCCeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhcccccc--cceEEEeecCCCcccchhhcCCCccCceee
Confidence 99999999999999999999887654 667789999999999999654 789999999999999999999 9999999
Q ss_pred ecCCCHHHHHHHHHHHHh--hccCCChhhHHHHHHHcC--CCcHHHHHHHHHHHHHHhHHHHHhhhh
Q 001031 1116 VNLPDAPNREKIIRVILA--KEELASDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIREILEKEK 1178 (1183)
Q Consensus 1116 I~lPd~eeR~eILk~iL~--k~~l~~didl~~LA~~Te--GySg~DL~~L~~~Aa~~Aire~le~ek 1178 (1183)
+++|+.++|..||+.+.+ +..+.+++|+++||..+. ||||+||..||++|.+.|+++.+.+..
T Consensus 676 V~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~ 742 (802)
T KOG0733|consen 676 VGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEID 742 (802)
T ss_pred ecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999 777889999999999877 999999999999999999999887543
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-59 Score=546.79 Aligned_cols=369 Identities=32% Similarity=0.545 Sum_probs=326.8
Q ss_pred CC-CEEEEEcChhhhhcCC-------hhhHHHHHHHHhcCC--CCEEEEEeccCCCcccccCCCCCceeeccCcchhhhc
Q 001031 703 SS-PLIVFVKDIEKSLTGN-------NDAYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALL 772 (1183)
Q Consensus 703 ~~-P~Ilf~~Die~~l~~~-------~~~~~~i~~~L~~L~--g~vivIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~ 772 (1183)
.+ |+||||+|+|.+.+++ .++-+.+-..++.+. ++||||+++|
T Consensus 276 ~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atn--------------------------- 328 (693)
T KOG0730|consen 276 FQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATN--------------------------- 328 (693)
T ss_pred cCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecC---------------------------
Confidence 55 9999999999977632 334444444555555 7999999999
Q ss_pred cccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH-HHHHHHhhhhhhhhhccchhHHHHH-hhhCCCCc
Q 001031 773 DLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS-DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDC 850 (1183)
Q Consensus 773 d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR-Rferq~e~~Lpd~~gR~~Il~IHT~-l~~~~l~~ 850 (1183)
+|+.+|+ +++| ||++++++..|+..+|.+|+++|++ |... ++
T Consensus 329 ---rp~sld~-------------------------------alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~--~~ 372 (693)
T KOG0730|consen 329 ---RPDSLDP-------------------------------ALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL--SD 372 (693)
T ss_pred ---CccccCh-------------------------------hhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc--ch
Confidence 7777887 9998 9999999999999999999999998 4433 78
Q ss_pred ccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhHHHHHhhhhhhhhhhhhhhcccChhHH
Q 001031 851 VDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEF 930 (1183)
Q Consensus 851 vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~dF~~al~eikp~~~slk~~v~~~E~ 930 (1183)
++|..+|..|.||.|+|+..+|++|...++++ ...+|+.++..+.|..-
T Consensus 373 ~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~--------------------~~~~~~~A~~~i~psa~----------- 421 (693)
T KOG0730|consen 373 VDLEDIAVSTHGYVGADLAALCREASLQATRR--------------------TLEIFQEALMGIRPSAL----------- 421 (693)
T ss_pred hhHHHHHHHccchhHHHHHHHHHHHHHHHhhh--------------------hHHHHHHHHhcCCchhh-----------
Confidence 99999999999999999999999999988875 45677766655544211
Q ss_pred HHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC
Q 001031 931 EKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA 1010 (1183)
Q Consensus 931 ek~ll~~iIp~~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~ 1010 (1183)
..++ ..-++++|+||||++++|.+|++.|.+|+++|+.|.+.++ .|++|||||||||||||++|+++|++.++
T Consensus 422 -----Re~~-ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi-~ppkGVLlyGPPGC~KT~lAkalAne~~~ 494 (693)
T KOG0730|consen 422 -----REIL-VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI-SPPKGVLLYGPPGCGKTLLAKALANEAGM 494 (693)
T ss_pred -----hhee-ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC-CCCceEEEECCCCcchHHHHHHHhhhhcC
Confidence 0111 2334789999999999999999999999999999999985 56699999999999999999999999999
Q ss_pred cEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCE
Q 001031 1011 NFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1090 (1183)
Q Consensus 1011 pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~V 1090 (1183)
+|+.+.+++++++|+|++|+.++++|..|+...|+|||+||||.+.+.|..... .+..+++++++.+|||+... .+|
T Consensus 495 nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~-~v~~RVlsqLLtEmDG~e~~--k~V 571 (693)
T KOG0730|consen 495 NFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS-GVTDRVLSQLLTEMDGLEAL--KNV 571 (693)
T ss_pred CeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc-chHHHHHHHHHHHccccccc--CcE
Confidence 999999999999999999999999999999999999999999999988874333 78899999999999999754 689
Q ss_pred EEEEecCCCCCCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001031 1091 LVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHC 1168 (1183)
Q Consensus 1091 lVIaTTN~p~~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~ 1168 (1183)
+|||+||+|+.||++++| ||++.|+|++|+.+.|.+||+.+++++++.+++|+.+||..|+||||+||.++|++|+..
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~ 651 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALL 651 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHh
Q 001031 1169 PIREILE 1175 (1183)
Q Consensus 1169 Aire~le 1175 (1183)
|+++.++
T Consensus 652 a~~e~i~ 658 (693)
T KOG0730|consen 652 ALRESIE 658 (693)
T ss_pred HHHHhcc
Confidence 9999875
No 3
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.8e-48 Score=483.81 Aligned_cols=486 Identities=30% Similarity=0.481 Sum_probs=389.1
Q ss_pred cccccccccccchhhHHHHHHhhhhhhccccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001031 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1183)
Q Consensus 449 ~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs 527 (1183)
-+++|+++--+ +..+..|.+.....++|+++- +++ + ...+.|||.||+| ....+||||||++++++++.++.
T Consensus 173 ~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~~~g--i-~~~~giLL~GppG--tGKT~laraia~~~~~~~i~i~~ 245 (733)
T TIGR01243 173 PKVTYEDIGGL--KEAKEKIREMVELPMKHPELFEHLG--I-EPPKGVLLYGPPG--TGKTLLAKAVANEAGAYFISING 245 (733)
T ss_pred CCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcC--C-CCCceEEEECCCC--CChHHHHHHHHHHhCCeEEEEec
Confidence 46889998766 888888888888888887763 232 2 3346799999999 68999999999999998877664
Q ss_pred CCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCceee
Q 001031 528 LLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKF 607 (1183)
Q Consensus 528 ~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~ 607 (1183)
..+.+. |
T Consensus 246 ~~i~~~-------------------------------------------------------------------------~ 252 (733)
T TIGR01243 246 PEIMSK-------------------------------------------------------------------------Y 252 (733)
T ss_pred HHHhcc-------------------------------------------------------------------------c
Confidence 322110 0
Q ss_pred eccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhHH
Q 001031 608 VGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDK 687 (1183)
Q Consensus 608 ~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~k 687 (1183)
+|. ..
T Consensus 253 ~g~---------------------------------------------------------------------------~~ 257 (733)
T TIGR01243 253 YGE---------------------------------------------------------------------------SE 257 (733)
T ss_pred ccH---------------------------------------------------------------------------HH
Confidence 000 00
Q ss_pred HHHHHHHHHHhhccCCCCEEEEEcChhhhhcCC--------hhhHHHHHHHHhcC--CCCEEEEEeccCCCcccccCCCC
Q 001031 688 LAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPG 757 (1183)
Q Consensus 688 ~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~~--------~~~~~~i~~~L~~L--~g~vivIgs~~~~d~~k~k~~~~ 757 (1183)
-.+..+|+.+.. ..|.||||+|+|.+.... .++.+.|...|+.+ .+.|+|||++|
T Consensus 258 ~~l~~lf~~a~~---~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn------------ 322 (733)
T TIGR01243 258 ERLREIFKEAEE---NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATN------------ 322 (733)
T ss_pred HHHHHHHHHHHh---cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecC------------
Confidence 115566666654 689999999999976532 12334445555555 35899999999
Q ss_pred CceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhhccc
Q 001031 758 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSN 835 (1183)
Q Consensus 758 ~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~ 835 (1183)
.|+.+|+ +++| ||++++++++|+...|.+
T Consensus 323 ------------------~~~~ld~-------------------------------al~r~gRfd~~i~i~~P~~~~R~~ 353 (733)
T TIGR01243 323 ------------------RPDALDP-------------------------------ALRRPGRFDREIVIRVPDKRARKE 353 (733)
T ss_pred ------------------ChhhcCH-------------------------------HHhCchhccEEEEeCCcCHHHHHH
Confidence 4555665 8877 999999999999999999
Q ss_pred hhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCC-Ccceec---ccchhhhHHHHHhh
Q 001031 836 IISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKD-AKLKIS---TESIMYGLNILQGI 910 (1183)
Q Consensus 836 Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~-~kl~Id---~~sIkv~~~dF~~a 910 (1183)
|+++|+. ...+ ++++++.|+..|.||++++|..+|..|+..++.+..+....+ ....+. .+.+.+...+|..+
T Consensus 354 Il~~~~~--~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~A 431 (733)
T TIGR01243 354 ILKVHTR--NMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEA 431 (733)
T ss_pred HHHHHhc--CCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHH
Confidence 9999865 2233 577899999999999999999999999999998765411100 000011 13345677888877
Q ss_pred hhhhhhhhhhhhcccChhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEE
Q 001031 911 QSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLF 990 (1183)
Q Consensus 911 l~eikp~~~slk~~v~~~E~ek~ll~~iIp~~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~ 990 (1183)
+..+.|... . + .+ ...+.++|++|+|++.+++.|.+.+.+|+.+++.|.+.++ ++++++|||
T Consensus 432 l~~v~ps~~--~------~--------~~-~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~-~~~~giLL~ 493 (733)
T TIGR01243 432 LKMVEPSAI--R------E--------VL-VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGI-RPPKGVLLF 493 (733)
T ss_pred Hhhcccccc--c------h--------hh-ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCC-CCCceEEEE
Confidence 766554211 0 0 00 0123578999999999999999999999999999998774 466899999
Q ss_pred cCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHH
Q 001031 991 GPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRK 1070 (1183)
Q Consensus 991 GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~ 1070 (1183)
||||||||++|+++|++++++|+.+.++++.+.|+|++++.++.+|..|+...|+||||||||.|++.+..........+
T Consensus 494 GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~ 573 (733)
T TIGR01243 494 GPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDR 573 (733)
T ss_pred CCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987765545556778
Q ss_pred HHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHH
Q 001031 1071 MKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIAN 1148 (1183)
Q Consensus 1071 il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~ 1148 (1183)
++++|+..++++.. ..+++||+|||+++.||++++| ||++.+++++|+.++|.+||+.++.+..+..++++..||.
T Consensus 574 ~~~~lL~~ldg~~~--~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~ 651 (733)
T TIGR01243 574 IVNQLLTEMDGIQE--LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAE 651 (733)
T ss_pred HHHHHHHHhhcccC--CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHH
Confidence 99999999999754 3679999999999999999998 9999999999999999999999999888888999999999
Q ss_pred HcCCCcHHHHHHHHHHHHHHhHHHHHh
Q 001031 1149 MADGYSGSDLKNLCVTAAHCPIREILE 1175 (1183)
Q Consensus 1149 ~TeGySg~DL~~L~~~Aa~~Aire~le 1175 (1183)
.|+||+|+||.++|++|++.++++.+.
T Consensus 652 ~t~g~sgadi~~~~~~A~~~a~~~~~~ 678 (733)
T TIGR01243 652 MTEGYTGADIEAVCREAAMAALRESIG 678 (733)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999998754
No 4
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-48 Score=431.01 Aligned_cols=312 Identities=63% Similarity=0.991 Sum_probs=288.9
Q ss_pred ccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhHHHHHhhhhhhhhhhhhhh-cccChhHHHHHHhcC
Q 001031 859 KDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLK-DVVTENEFEKKLLAD 937 (1183)
Q Consensus 859 ~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~dF~~al~eikp~~~slk-~~v~~~E~ek~ll~~ 937 (1183)
.+..+...-++.++.+|.+|++.++..+.... ..++..+++.++..+|+....+ .+++ .++..++++..+...
T Consensus 7 ~~~~~i~~~~~~i~~~A~~~~~~~~~~~~~d~-~~~~~~eS~~~~~~~l~~~~~~-----~s~k~~~i~~ne~E~~i~s~ 80 (386)
T KOG0737|consen 7 KDDVLITSLIRKIVAAAISHHLVHLLVPRLDP-NLKASRESLEKTEELLKNLEAE-----LSLKYRIIQKNEYEKRIASD 80 (386)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhccccccCh-hhhhhHHHHHHHHHHHHhhhhc-----cchhhhhhhhhHHHHHhhhc
Confidence 34445567788999999999998765443333 6677888888888888766443 3444 378899999999999
Q ss_pred CCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001031 938 VIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1183)
Q Consensus 938 iIp~~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~ 1017 (1183)
++++.++.++|+||+|++.+++++++.|.+|+++|++|..+.+.+|++|||||||||||||+||+|+|++.|.+|+.+.+
T Consensus 81 ~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~ 160 (386)
T KOG0737|consen 81 VVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSV 160 (386)
T ss_pred ccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecC
Q 001031 1018 SSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1097 (1183)
Q Consensus 1018 s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN 1097 (1183)
+.++++|+|+.++.++.+|..|.+.+|+||||||||.+++.| ...++++...+.++|+..|||+.++.+.+|+|+|+||
T Consensus 161 s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 161 SNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred cccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 999999999999999999999999999999999999999999 7789999999999999999999999888999999999
Q ss_pred CCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHhhh
Q 001031 1098 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1177 (1183)
Q Consensus 1098 ~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~le~e 1177 (1183)
+|.+||++++||++++++|++|+.++|.+|++.+++.+++.+++|+.++|.+|+||||+||+++|..|++.++|++++.+
T Consensus 240 RP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 240 RPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSE 319 (386)
T ss_pred CCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
No 5
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-46 Score=438.18 Aligned_cols=405 Identities=28% Similarity=0.474 Sum_probs=312.3
Q ss_pred HHHHHHHHhhccCCCCEEEEEcChhhhhcCC-----hhhHHHHHHHHh----cC-CCCEEEEEeccCCCcccccCCCCCc
Q 001031 690 INELFEVALNESKSSPLIVFVKDIEKSLTGN-----NDAYGALKSKLE----NL-PSNVVVIGSHTQLDSRKEKSHPGGL 759 (1183)
Q Consensus 690 ~~~l~evl~s~~~~~P~Ilf~~Die~~l~~~-----~~~~~~i~~~L~----~L-~g~vivIgs~~~~d~~k~k~~~~~~ 759 (1183)
+++.|..+.- ++|.||||++.|-+...+ -++.+.|+-.|. +. .+++||||+++..++
T Consensus 479 l~~~f~~a~~---~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~---------- 545 (953)
T KOG0736|consen 479 LQAIFSRARR---CSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIED---------- 545 (953)
T ss_pred HHHHHHHHhh---cCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEecccccc----------
Confidence 3444444443 588888888888754321 334444554444 22 359999999996554
Q ss_pred eeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHHHHHHHHhhhhhhhhhccchhHH
Q 001031 760 LFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISI 839 (1183)
Q Consensus 760 ~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~Il~I 839 (1183)
.|- .+-.+|...|+++.|. +.-|.+||++
T Consensus 546 ----------------lp~-----------------~i~~~f~~ei~~~~ls------------------e~qRl~iLq~ 574 (953)
T KOG0736|consen 546 ----------------LPA-----------------DIQSLFLHEIEVPALS------------------EEQRLEILQW 574 (953)
T ss_pred ----------------CCH-----------------HHHHhhhhhccCCCCC------------------HHHHHHHHHH
Confidence 221 2334454444455444 4445555555
Q ss_pred HHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCC----C-CCcceecccchhhhHHHHHhhhhh
Q 001031 840 RSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPG----K-DAKLKISTESIMYGLNILQGIQSE 913 (1183)
Q Consensus 840 HT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~----~-~~kl~Id~~sIkv~~~dF~~al~e 913 (1183)
- +....+ .++++..++.+|.||+-.+++.++..+...+..+-....+ . ...-.+......+...||-.++..
T Consensus 575 y--~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~ 652 (953)
T KOG0736|consen 575 Y--LNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSR 652 (953)
T ss_pred H--HhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHH
Confidence 3 122223 5778889999999999999999998775544443221111 0 111123334455566666555443
Q ss_pred hhhhhhhhhcccChhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCC
Q 001031 914 SKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPP 993 (1183)
Q Consensus 914 ikp~~~slk~~v~~~E~ek~ll~~iIp~~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPP 993 (1183)
.+. ++... +-.|.-++++|+||||++++|.+|.+.+.+|++++++|..+ .++..||||||||
T Consensus 653 ~~~------------~fs~a----iGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssg--lrkRSGILLYGPP 714 (953)
T KOG0736|consen 653 LQK------------EFSDA----IGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSG--LRKRSGILLYGPP 714 (953)
T ss_pred HHH------------hhhhh----cCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhcc--ccccceeEEECCC
Confidence 322 22222 33344458999999999999999999999999999999876 4555799999999
Q ss_pred CChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchH-HHHHHHH
Q 001031 994 GTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH-EAMRKMK 1072 (1183)
Q Consensus 994 GTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~-e~l~~il 1072 (1183)
|||||.||||+|.++..+|+.+.+++|.++|+|++|+++|.+|+.|+..+|||||+||+|+|.++|++.++. ..+.++.
T Consensus 715 GTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVV 794 (953)
T KOG0736|consen 715 GTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVV 794 (953)
T ss_pred CCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999876654 4789999
Q ss_pred HHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHh--ccCcEEEecCCC-HHHHHHHHHHHHhhccCCChhhHHHHHHH
Q 001031 1073 NEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPD-APNREKIIRVILAKEELASDVDLEGIANM 1149 (1183)
Q Consensus 1073 ~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RFd~vI~I~lPd-~eeR~eILk~iL~k~~l~~didl~~LA~~ 1149 (1183)
.+++.++||+.......|+||++||+|+.||++++| |||+.+++.+++ .+.+..+++.+.++..+..++++.+||+.
T Consensus 795 SQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~ 874 (953)
T KOG0736|consen 795 SQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKK 874 (953)
T ss_pred HHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhh
Confidence 999999999987667899999999999999999999 999999998875 66789999999999999999999999999
Q ss_pred cC-CCcHHHHHHHHHHHHHHhHHHHHhhhh
Q 001031 1150 AD-GYSGSDLKNLCVTAAHCPIREILEKEK 1178 (1183)
Q Consensus 1150 Te-GySg~DL~~L~~~Aa~~Aire~le~ek 1178 (1183)
+. .|||+|++.||..|++.|++|.+.+..
T Consensus 875 cp~~~TGADlYsLCSdA~l~AikR~i~~ie 904 (953)
T KOG0736|consen 875 CPPNMTGADLYSLCSDAMLAAIKRTIHDIE 904 (953)
T ss_pred CCcCCchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 97 799999999999999999999876654
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-42 Score=414.55 Aligned_cols=431 Identities=33% Similarity=0.488 Sum_probs=351.2
Q ss_pred eeeecCCCCCCCCCCC--CCCCCCCcccccccccccCCCcchhHHHHHHHHHHHHhhccCCCCEEEEEcChhhhhcCChh
Q 001031 645 GVRFDRSIPEGNNLGG--FCEDDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGNND 722 (1183)
Q Consensus 645 gV~fd~~~~~~~~l~~--~~~~~~~~~~~~~~~~~d~~~~~~~~k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~~~~ 722 (1183)
||.+..|...|+++++ .+.....+ ..-.-..+.++|.......+..+|+-+.. ..|.|+|+++++.+......
T Consensus 20 ~v~~~g~~~~~~t~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~---~~~~ii~~d~~~~~~~~~~~ 94 (494)
T COG0464 20 GVLLHGPPGTGKTLLARALANEGAEF--LSINGPEILSKYVGESELRLRELFEEAEK---LAPSIIFIDEIDALAPKRSS 94 (494)
T ss_pred CceeeCCCCCchhHHHHHHHhccCcc--cccCcchhhhhhhhHHHHHHHHHHHHHHH---hCCCeEeechhhhcccCccc
Confidence 6778888899999882 22222222 12222223567777778888888888877 77899999999998874322
Q ss_pred ----h----HHHHHHHHhcC-CCCEEEEEeccCCCcccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHH
Q 001031 723 ----A----YGALKSKLENL-PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKA 793 (1183)
Q Consensus 723 ----~----~~~i~~~L~~L-~g~vivIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~ 793 (1183)
. .+.+...++.+ .++|++||+++ .|+.+++
T Consensus 95 ~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~------------------------------~~~~~~~----------- 133 (494)
T COG0464 95 DQGEVERRVVAQLLALMDGLKRGQVIVIGATN------------------------------RPDGLDP----------- 133 (494)
T ss_pred cccchhhHHHHHHHHhcccccCCceEEEeecC------------------------------CccccCh-----------
Confidence 3 33444444444 35699999888 5566665
Q ss_pred HHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhhccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHH
Q 001031 794 LKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKI 871 (1183)
Q Consensus 794 ~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IHT~l~~~~l~~vdL~~LA~~tkgfsgAdIe~L 871 (1183)
++++ ||++++++.+|+..+|.+|+.+|+.++..+. ..++..++..+.||.++++..+
T Consensus 134 --------------------a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~l 192 (494)
T COG0464 134 --------------------AKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGP-PGTGKTLAARTVGKSGADLGAL 192 (494)
T ss_pred --------------------hHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCcc-cccHHHHHHhcCCccHHHHHHH
Confidence 7777 9999999999999999999999998443332 7889999999999999999999
Q ss_pred HhhhhhhHhhhccCCCCCCCcceecccchhhhHHHHHhhhhhhhhhhhhhhcccChhHHHHHHhcCCCCCCCCCCCcccc
Q 001031 872 VGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDI 951 (1183)
Q Consensus 872 v~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~dF~~al~eikp~~~slk~~v~~~E~ek~ll~~iIp~~e~~~tfdDI 951 (1183)
|+.+...++++.. ......+.+...+|..++..+.+. ..+-...+.++|+++
T Consensus 193 ~~~~~~~~~~r~~---------~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~~~~v~~~di 244 (494)
T COG0464 193 AKEAALRELRRAI---------DLVGEYIGVTEDDFEEALKKVLPS-------------------RGVLFEDEDVTLDDI 244 (494)
T ss_pred HHHHHHHHHHhhh---------ccCcccccccHHHHHHHHHhcCcc-------------------cccccCCCCcceehh
Confidence 9999999988764 223345556667776655444331 011223446899999
Q ss_pred cCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHH
Q 001031 952 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKY 1031 (1183)
Q Consensus 952 ~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~GesE~~ 1031 (1183)
+|++..++.+.+.+.+|+.+++.|.+.+ .+++.++|||||||||||+||+++|++++.+|+.+..++++++|+|+++++
T Consensus 245 ggl~~~k~~l~e~v~~~~~~~e~~~~~~-~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ 323 (494)
T COG0464 245 GGLEEAKEELKEAIETPLKRPELFRKLG-LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKN 323 (494)
T ss_pred hcHHHHHHHHHHHHHhHhhChHHHHhcC-CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHH
Confidence 9999999999999999999999988755 456689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHh--c
Q 001031 1032 VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--R 1109 (1183)
Q Consensus 1032 Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--R 1109 (1183)
++.+|..|++..|+||||||||.|++.+..... ....+++++++..++++... ..|+||+|||+++.+|++++| |
T Consensus 324 ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~-~~~~r~~~~lL~~~d~~e~~--~~v~vi~aTN~p~~ld~a~lR~gR 400 (494)
T COG0464 324 IRELFEKARKLAPSIIFIDEIDSLASGRGPSED-GSGRRVVGQLLTELDGIEKA--EGVLVIAATNRPDDLDPALLRPGR 400 (494)
T ss_pred HHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc-hHHHHHHHHHHHHhcCCCcc--CceEEEecCCCccccCHhhcccCc
Confidence 999999999999999999999999988765332 22368999999999998654 669999999999999999999 9
Q ss_pred cCcEEEecCCCHHHHHHHHHHHHhhcc--CCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHH
Q 001031 1110 LPRRLMVNLPDAPNREKIIRVILAKEE--LASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREIL 1174 (1183)
Q Consensus 1110 Fd~vI~I~lPd~eeR~eILk~iL~k~~--l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~l 1174 (1183)
|+..+++++|+.++|.+||+.++.... +..++++..+++.|+||+|+||..+|++|++.++++..
T Consensus 401 fd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~ 467 (494)
T COG0464 401 FDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR 467 (494)
T ss_pred cceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998644 35789999999999999999999999999999999874
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-42 Score=385.98 Aligned_cols=232 Identities=41% Similarity=0.710 Sum_probs=217.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001031 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1183)
Q Consensus 943 e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s 1022 (1183)
.+.++|+||||+++++++|++.|.+|+.+|++|.+.++ .||+|||||||||||||+||+|+|++.++.|+.+.+++|..
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI-~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGI-DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCC-CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 45789999999999999999999999999999999985 57799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCc--chHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC
Q 001031 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1183)
Q Consensus 1023 ~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~--~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1183)
+|+|+..+.++.+|..|+.+.||||||||||.+.++|.+. +.....++++.+|+.+|||+.+. .+|-||++||+++
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~--~nvKVI~ATNR~D 301 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR--GNVKVIMATNRPD 301 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC--CCeEEEEecCCcc
Confidence 9999999999999999999999999999999999888654 34455677888999999999764 7899999999999
Q ss_pred CCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHhhh
Q 001031 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1177 (1183)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~le~e 1177 (1183)
.|||+++| ||++.|+|++|+.+.|.+||+.+..++++..++|++.||+.++|+||+||+++|.+|.+.|+|+-....
T Consensus 302 ~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~V 380 (406)
T COG1222 302 ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEV 380 (406)
T ss_pred ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhccCee
Confidence 99999999 999999999999999999999999999999999999999999999999999999999999999865443
No 8
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-40 Score=379.36 Aligned_cols=427 Identities=20% Similarity=0.232 Sum_probs=311.7
Q ss_pred eeeecCCCCCCCCCCCCCCCCCCccc--------ccccccccCCCcchhHHHHHHHHHHHHhhccCC-----CCEEEEEc
Q 001031 645 GVRFDRSIPEGNNLGGFCEDDHGFFC--------TASSLRLDSSLGDEVDKLAINELFEVALNESKS-----SPLIVFVK 711 (1183)
Q Consensus 645 gV~fd~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~d~~~~~~~~k~~~~~l~evl~s~~~~-----~P~Ilf~~ 711 (1183)
|+..=.|+.+|+||++.- .|-+- +.+.+ ++.+....+--+.-||.=+.+|-|. +=-||-||
T Consensus 258 GiLLyGPPGTGKTLiARq---IGkMLNArePKIVNGPeI---L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFD 331 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQ---IGKMLNAREPKIVNGPEI---LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFD 331 (744)
T ss_pred eEEEECCCCCChhHHHHH---HHHHhcCCCCcccCcHHH---HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEeh
Confidence 555566889999998311 01111 11222 1223333333366677666555443 44699999
Q ss_pred Chhhhhc------CChhhHHHHHHHHh-cCCC-----CEEEEEeccCCCcccccCCCCCceeeccCcchhhhccccCCCC
Q 001031 712 DIEKSLT------GNNDAYGALKSKLE-NLPS-----NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDN 779 (1183)
Q Consensus 712 Die~~l~------~~~~~~~~i~~~L~-~L~g-----~vivIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~PD~ 779 (1183)
+||-..- ++.-.|..+|..|. ++.| +++|||-||+ +|=
T Consensus 332 EiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR------------------------------~Dl 381 (744)
T KOG0741|consen 332 EIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNR------------------------------KDL 381 (744)
T ss_pred hhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCc------------------------------hhh
Confidence 9999543 45667777776554 3444 9999999994 344
Q ss_pred ccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhhccchhHHHHH-hhhCCC--Ccccch
Q 001031 780 FSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGL--DCVDLE 854 (1183)
Q Consensus 780 ~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IHT~-l~~~~l--~~vdL~ 854 (1183)
+| ||||| |||+|+|+.|||++||.+|++|||+ |+++++ .++||.
T Consensus 382 ID-------------------------------EALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~ 430 (744)
T KOG0741|consen 382 ID-------------------------------EALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLK 430 (744)
T ss_pred HH-------------------------------HHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHH
Confidence 44 59999 9999999999999999999999999 999996 999999
Q ss_pred hhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhHHHHHhhhhhhhhhhhhhhcccChhHHHHHH
Q 001031 855 SLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENEFEKKL 934 (1183)
Q Consensus 855 ~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~dF~~al~eikp~~~slk~~v~~~E~ek~l 934 (1183)
+||.+||||+||||++||++|.|+|+.|+.....+........+++++...||.+++.+++|+++ ..+++++...
T Consensus 431 elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG-----~see~l~~~~ 505 (744)
T KOG0741|consen 431 ELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFG-----ISEEDLERFV 505 (744)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccC-----CCHHHHHHHH
Confidence 99999999999999999999999999999765433334456778999999999999999999999 6678899999
Q ss_pred hcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001031 935 LADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1183)
Q Consensus 935 l~~iIp~~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~ 1014 (1183)
..+++.|..+. ..+.+.-..++.+ ++. .-..+..++||+||||+|||+||..||...++||+.
T Consensus 506 ~~Gmi~~g~~v---------~~il~~G~llv~q-vk~-------s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvK 568 (744)
T KOG0741|consen 506 MNGMINWGPPV---------TRILDDGKLLVQQ-VKN-------SERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVK 568 (744)
T ss_pred hCCceeecccH---------HHHHhhHHHHHHH-hhc-------cccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEE
Confidence 99999887642 2233332233332 121 224466789999999999999999999999999999
Q ss_pred EecCc-cccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEE
Q 001031 1015 ISMSS-ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1183)
Q Consensus 1015 I~~s~-L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVI 1093 (1183)
+-.++ +.+..-...-.+++.+|..||+++-+||+||+|++|+ ++.+....+.+.+++.|+..+...+++. .+++|+
T Consensus 569 iiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLi--D~vpIGPRfSN~vlQaL~VllK~~ppkg-~kLli~ 645 (744)
T KOG0741|consen 569 IISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLL--DYVPIGPRFSNLVLQALLVLLKKQPPKG-RKLLIF 645 (744)
T ss_pred EeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhh--cccccCchhhHHHHHHHHHHhccCCCCC-ceEEEE
Confidence 86655 4333222334589999999999999999999999997 5566777888999999999999877654 789999
Q ss_pred EecCCCCCCcH-HHHhccCcEEEecCCCH-HHHHHHHHHHHhhccCCChhhHHHHHHH----cCCCcHHHHHHHHHHHHH
Q 001031 1094 AATNRPFDLDE-AVVRRLPRRLMVNLPDA-PNREKIIRVILAKEELASDVDLEGIANM----ADGYSGSDLKNLCVTAAH 1167 (1183)
Q Consensus 1094 aTTN~p~~Ld~-aLlrRFd~vI~I~lPd~-eeR~eILk~iL~k~~l~~didl~~LA~~----TeGySg~DL~~L~~~Aa~ 1167 (1183)
+||...+.|.+ .++..|+..++++..+. ++..+++.. .++..+.+...++.. ..+.-...|..|+.+|..
T Consensus 646 ~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~----~n~fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a~q 721 (744)
T KOG0741|consen 646 GTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE----LNIFSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMARQ 721 (744)
T ss_pred ecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH----ccCCCcchhHHHHHHHhccccchhHHHHHHHHHHHhc
Confidence 99988777664 57778987777765543 444444433 222333333333333 223335777778877764
No 9
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-40 Score=367.45 Aligned_cols=234 Identities=46% Similarity=0.782 Sum_probs=221.9
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001031 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1183)
Q Consensus 942 ~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~ 1021 (1183)
..+.+.|+||.|+.++|+-|+++|.+|+..|+.|. ++.+|.+|||++||||||||+||+|+|.+++..|++|+.+++.
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~--GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHh--hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 44579999999999999999999999999999996 4588999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccC--CCCEEEEEecCCC
Q 001031 1022 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--KERVLVLAATNRP 1099 (1183)
Q Consensus 1022 s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~--~~~VlVIaTTN~p 1099 (1183)
++|-|++|+.++-+|.+|+.+.|++|||||||.|+.+|++..++++.+++..+|+.++||+.... ...|+|+|+||.|
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~P 362 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFP 362 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999987643 2348999999999
Q ss_pred CCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHhhh
Q 001031 1100 FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1177 (1183)
Q Consensus 1100 ~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~le~e 1177 (1183)
++||++|+|||.++|+|++|+.+.|..+|+..+....+.++++++.|+..++||||+||.++|++|.+.++||.+..-
T Consensus 363 WdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~ 440 (491)
T KOG0738|consen 363 WDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGL 440 (491)
T ss_pred cchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876543
No 10
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-38 Score=366.84 Aligned_cols=299 Identities=31% Similarity=0.526 Sum_probs=254.8
Q ss_pred cccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhHHHHHhhhhhhhhhhhhhhcccChhH
Q 001031 850 CVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTENE 929 (1183)
Q Consensus 850 ~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~dF~~al~eikp~~~slk~~v~~~E 929 (1183)
..+|+.|+.+|.||..-|+.-+|.-|...++... +....| ..+..+|..++..-.|..
T Consensus 595 ~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~ler---is~~~k--------lltke~f~ksL~~F~P~a----------- 652 (952)
T KOG0735|consen 595 MDDLDFLSVKTEGYLATDLVIFVERAIHEAFLER---ISNGPK--------LLTKELFEKSLKDFVPLA----------- 652 (952)
T ss_pred hHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHH---hccCcc--------cchHHHHHHHHHhcChHH-----------
Confidence 4567779999999999999999999999988322 222322 223455655544433321
Q ss_pred HHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 001031 930 FEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 930 ~ek~ll~~iIp~~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
+.++--....+..|+||+|+.++++.|++.+++|.++|.+|.+..+. -..|||||||||||||+||.++|...+
T Consensus 653 -----LR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr-~~~giLLyGppGcGKT~la~a~a~~~~ 726 (952)
T KOG0735|consen 653 -----LRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLR-LRTGILLYGPPGCGKTLLASAIASNSN 726 (952)
T ss_pred -----hhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcc-cccceEEECCCCCcHHHHHHHHHhhCC
Confidence 11111111224789999999999999999999999999999987754 448999999999999999999999999
Q ss_pred CcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCC
Q 001031 1010 ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1089 (1183)
Q Consensus 1010 ~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~ 1089 (1183)
..|+.+.++++.++|+|.+|+.+|.+|..|+..+|||||+||+|.+.++|+.. ......++.++++.++||... -..
T Consensus 727 ~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD-sTGVTDRVVNQlLTelDG~Eg--l~G 803 (952)
T KOG0735|consen 727 LRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD-STGVTDRVVNQLLTELDGAEG--LDG 803 (952)
T ss_pred eeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC-CCCchHHHHHHHHHhhccccc--cce
Confidence 99999999999999999999999999999999999999999999999988653 334567899999999999764 367
Q ss_pred EEEEEecCCCCCCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001031 1090 VLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAH 1167 (1183)
Q Consensus 1090 VlVIaTTN~p~~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~ 1167 (1183)
|.|+|+|.+|+.+|++++| |+++.++.++|+..+|.+|++.+.....+..++|++.+|.+|+||+|+||..|+-.|.+
T Consensus 804 V~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l 883 (952)
T KOG0735|consen 804 VYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQL 883 (952)
T ss_pred EEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999999888888899999999999999999999999999999
Q ss_pred HhHHHHHhhhhh
Q 001031 1168 CPIREILEKEKK 1179 (1183)
Q Consensus 1168 ~Aire~le~ek~ 1179 (1183)
.|+++++..+..
T Consensus 884 ~avh~~l~~~~~ 895 (952)
T KOG0735|consen 884 AAVHEILKREDE 895 (952)
T ss_pred HHHHHHHHhcCc
Confidence 999999877653
No 11
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-37 Score=360.50 Aligned_cols=231 Identities=38% Similarity=0.676 Sum_probs=218.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~ 1024 (1183)
.+.|.||||+++...+|.+.+.. +.+|+.|...++ .|++|||||||||||||+||+|||.+++.||+.++++++.+.+
T Consensus 186 nv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv-~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGV-RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCC-CCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 67999999999999999999998 999999999885 5779999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccC--CCCEEEEEecCCCCCC
Q 001031 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD--KERVLVLAATNRPFDL 1102 (1183)
Q Consensus 1025 ~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~--~~~VlVIaTTN~p~~L 1102 (1183)
.|++|+.|+.+|..|+...|||+||||||.+.++|.. ...++.+++..+|+..||++.... +.+|+||+|||+|+.|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDsl 342 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSL 342 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCccc
Confidence 9999999999999999999999999999999988876 667788999999999999987653 4789999999999999
Q ss_pred cHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHhhhh
Q 001031 1103 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKEK 1178 (1183)
Q Consensus 1103 d~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~le~ek 1178 (1183)
|++++| ||++.|.+.+|+..+|.+||+.++++..+..++++..||+.|.||.|+||..||.+|+..|++|+++...
T Consensus 343 DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~ 420 (802)
T KOG0733|consen 343 DPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSS 420 (802)
T ss_pred CHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhccc
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999987543
No 12
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-38 Score=338.62 Aligned_cols=236 Identities=42% Similarity=0.752 Sum_probs=218.3
Q ss_pred cCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 936 ADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 936 ~~iIp~~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
+.-|-...+++.|+|+.|++.+|+.|++.|.+|++.|.+|... .+|.++|||||||||||++||+|+|.+.+..|+.+
T Consensus 120 ~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk--R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSv 197 (439)
T KOG0739|consen 120 NSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK--RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSV 197 (439)
T ss_pred hhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC--CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEe
Confidence 4445567789999999999999999999999999999999744 67899999999999999999999999999999999
Q ss_pred ecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEe
Q 001031 1016 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1095 (1183)
Q Consensus 1016 ~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaT 1095 (1183)
+.++|+++|.|++|+.++++|++|+.+.|+||||||||.+++.+.. ++.++.+++..+|+.+|.|... +...|+|+++
T Consensus 198 SSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e-nEseasRRIKTEfLVQMqGVG~-d~~gvLVLgA 275 (439)
T KOG0739|consen 198 SSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE-NESEASRRIKTEFLVQMQGVGN-DNDGVLVLGA 275 (439)
T ss_pred ehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC-CchHHHHHHHHHHHHhhhcccc-CCCceEEEec
Confidence 9999999999999999999999999999999999999999877754 6678889999999999999865 4588999999
Q ss_pred cCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhcc-CCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHH
Q 001031 1096 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE-LASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREIL 1174 (1183)
Q Consensus 1096 TN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~-l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~l 1174 (1183)
||-|+.||.+++|||.++|+|++|+...|..+|+.++.... ...+.|+.+|+++|+||||+||.-+++.|.+.++|++.
T Consensus 276 TNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvq 355 (439)
T KOG0739|consen 276 TNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQ 355 (439)
T ss_pred CCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhh
Confidence 99999999999999999999999999999999999998754 34778999999999999999999999999999999975
Q ss_pred h
Q 001031 1175 E 1175 (1183)
Q Consensus 1175 e 1175 (1183)
.
T Consensus 356 s 356 (439)
T KOG0739|consen 356 S 356 (439)
T ss_pred h
Confidence 3
No 13
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-36 Score=346.24 Aligned_cols=231 Identities=39% Similarity=0.618 Sum_probs=214.4
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001031 940 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1183)
Q Consensus 940 p~~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~ 1019 (1183)
|....+++|+|+-|.+++|++|++.|.+ ++.|+.|.+.+ .+-|+||||+||||||||+||+|+|.+.+.||+...+++
T Consensus 295 p~~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLG-GKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSE 372 (752)
T KOG0734|consen 295 PEQMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLG-GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSE 372 (752)
T ss_pred hhhhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhcc-CcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccc
Confidence 3334478999999999999999998875 89999999987 566799999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCC
Q 001031 1020 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1183)
Q Consensus 1020 L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p 1099 (1183)
+...++|...+.++.+|..|+...||||||||||.+.++|.....+ ..++.+++|+.+|||+..+ ..|+||++||.|
T Consensus 373 FdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~qN--eGiIvigATNfp 449 (752)
T KOG0734|consen 373 FDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQN--EGIIVIGATNFP 449 (752)
T ss_pred hhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCcC--CceEEEeccCCh
Confidence 9999999999999999999999999999999999998888665444 8899999999999999754 789999999999
Q ss_pred CCCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHh
Q 001031 1100 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILE 1175 (1183)
Q Consensus 1100 ~~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~le 1175 (1183)
+.||+++.| ||+++|.++.||...|.+||+.|+.+..+..++|+..||+-|.||+|+||.||++.||..|..+.-+
T Consensus 450 e~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~ 527 (752)
T KOG0734|consen 450 EALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAE 527 (752)
T ss_pred hhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcc
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999998876543
No 14
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=2.6e-33 Score=332.91 Aligned_cols=282 Identities=23% Similarity=0.389 Sum_probs=222.2
Q ss_pred CCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhHHHHHhhhhhhhhhhhhhhcccCh
Q 001031 848 LDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKSLKKSLKDVVTE 927 (1183)
Q Consensus 848 l~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~dF~~al~eikp~~~slk~~v~~ 927 (1183)
++...++.|+..+.|++-.+++.++..+.. ... .++.+.+...+.. .+.. +..
T Consensus 162 ~~~~~~~~l~~~~~gls~~~~~~~~~~~~~----~~~---------~~~~~~~~~i~~~-------k~q~-------~~~ 214 (489)
T CHL00195 162 IDSELLENLTRACQGLSLERIRRVLSKIIA----TYK---------TIDENSIPLILEE-------KKQI-------ISQ 214 (489)
T ss_pred CCHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HcC---------CCChhhHHHHHHH-------HHHH-------Hhh
Confidence 567788899999999999999998875332 110 1222322221111 0000 000
Q ss_pred hHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 001031 928 NEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 928 ~E~ek~ll~~iIp~~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
.+++.......+|+||+|++.+|+.+.+..... ...+...++ .+++|||||||||||||++|++||++
T Consensus 215 --------~~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl-~~pkGILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 215 --------TEILEFYSVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGL-PTPRGLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred --------hccccccCCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCC-CCCceEEEECCCCCcHHHHHHHHHHH
Confidence 122222334678999999999999998755421 122233343 56699999999999999999999999
Q ss_pred hCCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCC
Q 001031 1008 AGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 1087 (1183)
Q Consensus 1008 Lg~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~ 1087 (1183)
++.+|+.++++.+.+.++|+++..++++|..|+..+||||||||||.++..+..........+++.+|+..++. ..
T Consensus 283 ~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~----~~ 358 (489)
T CHL00195 283 WQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE----KK 358 (489)
T ss_pred hCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc----CC
Confidence 99999999999999999999999999999999999999999999999987655444556677888899888764 23
Q ss_pred CCEEEEEecCCCCCCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccC--CChhhHHHHHHHcCCCcHHHHHHHHH
Q 001031 1088 ERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEEL--ASDVDLEGIANMADGYSGSDLKNLCV 1163 (1183)
Q Consensus 1088 ~~VlVIaTTN~p~~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l--~~didl~~LA~~TeGySg~DL~~L~~ 1163 (1183)
.+|+||+|||+++.||++++| ||++++++++|+.++|.+||+.++.+... ..+.++..||..|+||||+||+++|.
T Consensus 359 ~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~ 438 (489)
T CHL00195 359 SPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSII 438 (489)
T ss_pred CceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHH
Confidence 679999999999999999998 99999999999999999999999988643 25788999999999999999999999
Q ss_pred HHHHHhHHH
Q 001031 1164 TAAHCPIRE 1172 (1183)
Q Consensus 1164 ~Aa~~Aire 1172 (1183)
+|++.|+.+
T Consensus 439 eA~~~A~~~ 447 (489)
T CHL00195 439 EAMYIAFYE 447 (489)
T ss_pred HHHHHHHHc
Confidence 999988764
No 15
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-33 Score=299.96 Aligned_cols=231 Identities=38% Similarity=0.662 Sum_probs=215.2
Q ss_pred CCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001031 940 PPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1183)
Q Consensus 940 p~~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~ 1019 (1183)
+..++.+++.||||++-+|+++++.+++|+.+.++|.+.++ .||+|||||||||||||+||+|+|+...+.|+.+.+++
T Consensus 146 ~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigi-dpprgvllygppg~gktml~kava~~t~a~firvvgse 224 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGI-DPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSE 224 (408)
T ss_pred CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCC-CCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHH
Confidence 33456789999999999999999999999999999999885 56799999999999999999999999999999999999
Q ss_pred cccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCc--chHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecC
Q 001031 1020 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1097 (1183)
Q Consensus 1020 L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~--~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN 1097 (1183)
+..+|.|+....++.+|..|+...|+||||||||.+..+|++. +......+++-+++++++|+... .+|-||++||
T Consensus 225 fvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~--~nvkvimatn 302 (408)
T KOG0727|consen 225 FVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT--TNVKVIMATN 302 (408)
T ss_pred HHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc--cceEEEEecC
Confidence 9999999999999999999999999999999999999887653 33445678899999999999754 7899999999
Q ss_pred CCCCCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1098 RPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1098 ~p~~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
+.+.||++++| |+++.|+|++|+..+++-+|..+..++++.+++|++.+..+-+-.|++||..+|++|.+.|+|+.
T Consensus 303 radtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n 380 (408)
T KOG0727|consen 303 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN 380 (408)
T ss_pred cccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999985
No 16
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-35 Score=362.10 Aligned_cols=415 Identities=19% Similarity=0.202 Sum_probs=300.4
Q ss_pred ceeeeccccCCCCceeeeecCCCCCCCCCC-----CCCCCCCC---cccccccccccCCCcchhHHHHHHHHHHHHhhcc
Q 001031 630 GRVILPFEDNDFSKIGVRFDRSIPEGNNLG-----GFCEDDHG---FFCTASSLRLDSSLGDEVDKLAINELFEVALNES 701 (1183)
Q Consensus 630 g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~-----~~~~~~~~---~~~~~~~~~~d~~~~~~~~k~~~~~l~evl~s~~ 701 (1183)
+++...|-.++. =||.|++|++.|+||| +.|+.+.. ||......| .+.|.+++.+.+..|||.+..
T Consensus 288 PE~f~~~~itpP--rgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~--lskwvgEaERqlrllFeeA~k-- 361 (1080)
T KOG0732|consen 288 PEFFDNFNITPP--RGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC--LSKWVGEAERQLRLLFEEAQK-- 361 (1080)
T ss_pred hhHhhhcccCCC--cceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh--hccccCcHHHHHHHHHHHHhc--
Confidence 455444556664 3899999999999999 77877665 898888888 679999999999999999988
Q ss_pred CCCCEEEEEcChhhhhc----CChhhHHHHHHHHhcC------CCCEEEEEeccCCCcccccCCCCCceeeccCcchhhh
Q 001031 702 KSSPLIVFVKDIEKSLT----GNNDAYGALKSKLENL------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTAL 771 (1183)
Q Consensus 702 ~~~P~Ilf~~Die~~l~----~~~~~~~~i~~~L~~L------~g~vivIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~ 771 (1183)
++|+||||++||++.. .+.++|++||++|.+| +|+||||||||
T Consensus 362 -~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATn-------------------------- 414 (1080)
T KOG0732|consen 362 -TQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATN-------------------------- 414 (1080)
T ss_pred -cCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccC--------------------------
Confidence 9999999999999876 6899999999999999 78999999999
Q ss_pred ccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhhccchhHHHHHhhhCCCC
Q 001031 772 LDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGLD 849 (1183)
Q Consensus 772 ~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IHT~l~~~~l~ 849 (1183)
+||++|| ||+| ||+++|||+||+..+|..|+.|||+.|.+++.
T Consensus 415 ----Rpda~dp-------------------------------aLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~ 459 (1080)
T KOG0732|consen 415 ----RPDAIDP-------------------------------ALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPIS 459 (1080)
T ss_pred ----Cccccch-------------------------------hhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCC
Confidence 8899998 9999 99999999999999999999999999999998
Q ss_pred cccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCC-CCcceecccchhhhHHHHHhhhhhhhhhhhhhhcc--cC
Q 001031 850 CVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKISTESIMYGLNILQGIQSESKSLKKSLKDV--VT 926 (1183)
Q Consensus 850 ~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~-~~kl~Id~~sIkv~~~dF~~al~eikp~~~slk~~--v~ 926 (1183)
-..++.||..|.||+||||++||++|+..++++.++++|. ..++.+++..+++...+|..++..+.+....-..+ .+
T Consensus 460 ~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~P 539 (1080)
T KOG0732|consen 460 RELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRP 539 (1080)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCC
Confidence 8899999999999999999999999999999999999998 78899999999999999999988776542211000 00
Q ss_pred hhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhh-hhcCCCCCCCceEEEEcCCCChHHHHHHHHH
Q 001031 927 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPEL-FCKGQLTKPCKGILLFGPPGTGKTMLAKAVA 1005 (1183)
Q Consensus 927 ~~E~ek~ll~~iIp~~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~el-f~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA 1005 (1183)
.......++ +..........+.-.......+.+...+.+...+. |.-..+.+| .+||.|..|.|.+++..+|.
T Consensus 540 l~~~~~~ll----~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~--~lli~~~~~~g~~~lg~aIl 613 (1080)
T KOG0732|consen 540 LSTYLKPLL----PFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRP--RLLINGGKGSGQDYLGPAIL 613 (1080)
T ss_pred CCcceeccc----chHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCc--HHhcCCCcccccCcccHHHH
Confidence 000000000 00000000011111222222222222221111111 122223333 59999999999999999999
Q ss_pred HHh-CCcEEEEecCcccccc-ccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCc
Q 001031 1006 TEA-GANFINISMSSITSKW-FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1083 (1183)
Q Consensus 1006 ~eL-g~pfi~I~~s~L~s~~-~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~ 1083 (1183)
+.+ +.++..+..+.+.... .+..+..|..+|..|++..||||||.++|.|...... .+...|+..++...
T Consensus 614 h~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~p~--------s~~~~~~~~l~~~~ 685 (1080)
T KOG0732|consen 614 HRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVIPV--------SFLEEFLSSLDEKA 685 (1080)
T ss_pred HHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcCcc--------hhhhcchhcchhhh
Confidence 998 8888888888777665 6777889999999999999999999999999633221 23334444333211
Q ss_pred ccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhh
Q 001031 1084 TKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1134 (1183)
Q Consensus 1084 ~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k 1134 (1183)
. ...|..+-+-+.- +..-=..++.+..|..+.+..+++..+++
T Consensus 686 ~--~t~i~e~~t~~~~------~~~~~~~~~t~~~p~~~s~~~ff~r~I~~ 728 (1080)
T KOG0732|consen 686 L--STPILELHTWDTS------FESVNKSVVTLSKPSAESTGAFFKRLIRK 728 (1080)
T ss_pred h--ccchhhhcccccc------ccccCccccccccchhhhhHHHHHHHHHH
Confidence 1 1122222221111 00000134566778888888777777654
No 17
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-33 Score=293.86 Aligned_cols=226 Identities=36% Similarity=0.637 Sum_probs=210.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~ 1024 (1183)
..+++-+||++.+++++++.+.+|.++|++|...++..| +|+|||||||||||.||+++|+...+.|+.++++++..+|
T Consensus 143 DStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQP-KGvlLygppgtGktLlaraVahht~c~firvsgselvqk~ 221 (404)
T KOG0728|consen 143 DSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQP-KGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKY 221 (404)
T ss_pred ccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCC-cceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHH
Confidence 568889999999999999999999999999999997766 9999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCC--CcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCC
Q 001031 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE--NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1183)
Q Consensus 1025 ~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~--~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~L 1102 (1183)
+|+....++.+|-+|+.+.|+|||+||||++...|. +.+......+.+.++++++||+... .++-||.+||+.+.|
T Consensus 222 igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat--knikvimatnridil 299 (404)
T KOG0728|consen 222 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT--KNIKVIMATNRIDIL 299 (404)
T ss_pred hhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc--cceEEEEeccccccc
Confidence 999999999999999999999999999999986653 2333445567778899999999755 679999999999999
Q ss_pred cHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1103 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1103 d~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
|++++| |+++.|+|+.|+.+.|.+|++.+..++++...+++..+|....|.||++++.+|.+|.+.|+|+-
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer 372 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER 372 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh
Confidence 999999 99999999999999999999999999999999999999999999999999999999999999885
No 18
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-33 Score=295.28 Aligned_cols=229 Identities=32% Similarity=0.600 Sum_probs=212.8
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001031 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1183)
Q Consensus 943 e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s 1022 (1183)
.+..++.||||+++++++|.+.+.+|+.+++.|.+.++ +||+|+|+|||||||||.+|+|.|...+..|..+.++.+..
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi-~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGI-RPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCC-CCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 45668999999999999999999999999999999985 57799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcc--hHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC
Q 001031 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1183)
Q Consensus 1023 ~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~--~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1183)
.|+|...+.++..|..|+...|+||||||+|.+..+|+... ......+.+.+++.+++|+.+. ..|-||++||+.+
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~--~~vKviAATNRvD 321 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD--DRVKVIAATNRVD 321 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc--cceEEEeeccccc
Confidence 99999999999999999999999999999999988886542 3334566778899999999865 7899999999999
Q ss_pred CCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHH
Q 001031 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREIL 1174 (1183)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~l 1174 (1183)
.||++++| |+++.|+|+.|+.+.|.+|++.+..++++.+++++++||+.|++|.|++++.+|.+|.+.|+|+.-
T Consensus 322 iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~a 397 (424)
T KOG0652|consen 322 ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGA 397 (424)
T ss_pred ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccc
Confidence 99999999 999999999999999999999999999999999999999999999999999999999999999753
No 19
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-32 Score=333.07 Aligned_cols=230 Identities=42% Similarity=0.698 Sum_probs=211.0
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001031 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1183)
Q Consensus 942 ~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~ 1021 (1183)
.+.+++|.|+.|.++++++|+|.|.. |++|+.|.+.+ .+.|+|+||+||||||||.||+|+|.+.|.||+.++++++.
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lG-AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcC-CcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 44578999999999999999999985 99999999988 56779999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCC---CcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCC
Q 001031 1022 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE---NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1183)
Q Consensus 1022 s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~---~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~ 1098 (1183)
..+.|.....++.+|..|+...||||||||||.+...+. ..+.+......+++++.++||+... ..|+|+|+||+
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tnr 459 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATNR 459 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccCC
Confidence 999988899999999999999999999999999987773 3344455567899999999999765 77999999999
Q ss_pred CCCCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHh
Q 001031 1099 PFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILE 1175 (1183)
Q Consensus 1099 p~~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~le 1175 (1183)
++.||++++| ||++.|.+++|+...|.+|++.++...++. ++.++..||.+|.||+|+||.++|++|+..|+|+...
T Consensus 460 ~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~ 539 (774)
T KOG0731|consen 460 PDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLR 539 (774)
T ss_pred ccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccC
Confidence 9999999999 999999999999999999999999998885 7888999999999999999999999999999996543
No 20
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-33 Score=299.23 Aligned_cols=230 Identities=38% Similarity=0.641 Sum_probs=213.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~ 1024 (1183)
..+|+||||++.++++|++.+.+|+.+|++|...+ .+||+||+|||+||||||.||+|+|+...+.|+++..++|..+|
T Consensus 181 ~Ety~diGGle~QiQEiKEsvELPLthPE~YeemG-ikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQky 259 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 259 (440)
T ss_pred hhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcC-CCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 56899999999999999999999999999999988 46779999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCC--cchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCC
Q 001031 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1183)
Q Consensus 1025 ~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~--~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~L 1102 (1183)
.|+..+.++++|..|..++|+|+||||||.+..+|++ .+......+.+.+|+++++|+..+ ..|-||++||+.+.|
T Consensus 260 lGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr--gDvKvimATnrie~L 337 (440)
T KOG0726|consen 260 LGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR--GDVKVIMATNRIETL 337 (440)
T ss_pred hccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc--CCeEEEEeccccccc
Confidence 9999999999999999999999999999999888754 344555566777999999999764 789999999999999
Q ss_pred cHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHhhh
Q 001031 1103 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1177 (1183)
Q Consensus 1103 d~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~le~e 1177 (1183)
|++++| |+++.|+|+.||...+..||..+..++.+..+++++.+...-+.+||+||+.+|.+|.+.|+|+.....
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~v 414 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKV 414 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhc
Confidence 999999 999999999999999999999999999999999999999999999999999999999999999876544
No 21
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.98 E-value=3.9e-32 Score=290.54 Aligned_cols=229 Identities=33% Similarity=0.518 Sum_probs=201.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~ 1024 (1183)
..+|+|++|++++|...+- ++..+.+|+.|.++. |++||+|||||||||++|+++|++++.||+.+...++.+.+
T Consensus 117 ~it~ddViGqEeAK~kcrl-i~~yLenPe~Fg~WA----PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRL-IMEYLENPERFGDWA----PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred cccHhhhhchHHHHHHHHH-HHHHhhChHHhcccC----cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 5789999999999987654 445688999998774 58999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcH
Q 001031 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1104 (1183)
Q Consensus 1025 ~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~ 1104 (1183)
+|+..+.|+++|+.|++..|||+||||+|.+.-.|.-+....-...+.|.|+..+||+. .+..|..||+||+++.||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~--eneGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK--ENEGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc--cCCceEEEeecCChhhcCH
Confidence 99999999999999999999999999999986443322222234578899999999987 4588999999999999999
Q ss_pred HHHhccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHH-HHHHHHHHhHHHHHhhhhhc
Q 001031 1105 AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKN-LCVTAAHCPIREILEKEKKV 1180 (1183)
Q Consensus 1105 aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~-L~~~Aa~~Aire~le~ek~~ 1180 (1183)
++++||...|+|.+|+.++|.+|++.+++++++.-+.+++.++..|.|+||+||+. ++..|.++|+.+-.++...+
T Consensus 270 aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~e 346 (368)
T COG1223 270 AIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVERE 346 (368)
T ss_pred HHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhHH
Confidence 99999999999999999999999999999999998999999999999999999965 66777788888776655443
No 22
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.98 E-value=2.1e-31 Score=310.40 Aligned_cols=228 Identities=39% Similarity=0.655 Sum_probs=207.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001031 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1183)
Q Consensus 943 e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s 1022 (1183)
.+.++|+||+|++.++++|++.+.+|+.+++.|.+.++ .+++++|||||||||||+||+++|++++.+|+.+.++++..
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl-~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI-DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC-CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 45789999999999999999999999999999998885 46699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCc--chHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC
Q 001031 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1183)
Q Consensus 1023 ~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~--~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1183)
.|.|+.+..++.+|..|+...|+||||||||.++.++.+. +......+++.+++..++++... .+++||+|||+++
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~--~~v~VI~aTN~~d 295 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT--TNVKVIMATNRAD 295 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC--CCEEEEEecCCch
Confidence 9999999999999999999999999999999998766432 22334567788889888887543 5799999999999
Q ss_pred CCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
.||++++| ||++.|++++|+.++|.+||+.++.+..+..++++..++..|+||+|+||+++|++|++.|+++.
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~ 370 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN 370 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999998 99999999999999999999999999888899999999999999999999999999999999885
No 23
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.8e-32 Score=311.84 Aligned_cols=230 Identities=50% Similarity=0.849 Sum_probs=216.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001031 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1183)
Q Consensus 943 e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s 1022 (1183)
...+.|+|+.|++.+++.+.+++.+|+.++++|... ..|.+++||+||||+|||+|++|||.+.++.|+.++.+.|.+
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl--r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL--REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc--ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 346889999999999999999999999999999754 668899999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCC
Q 001031 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1183)
Q Consensus 1023 ~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~L 1102 (1183)
+|+|+.|+.++.+|..|+..+|+||||||||.++..| .+..++..+++..+|+..+++.......+|+||+|||.|+.+
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~ 303 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWEL 303 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHH
Confidence 9999999999999999999999999999999999988 667888889999999999999998888899999999999999
Q ss_pred cHHHHhccCcEEEecCCCHHHHHHHHHHHHhhc-cCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHh
Q 001031 1103 DEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILE 1175 (1183)
Q Consensus 1103 d~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~-~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~le 1175 (1183)
|++++|||..+++|++|+.+.|..+|+.++.+. ....+.++..|++.|+||+++||..+|.+|++..++++..
T Consensus 304 Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~ 377 (428)
T KOG0740|consen 304 DEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGG 377 (428)
T ss_pred HHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhccc
Confidence 999999999999999999999999999999887 3447789999999999999999999999999999988765
No 24
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-31 Score=286.15 Aligned_cols=229 Identities=34% Similarity=0.613 Sum_probs=212.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001031 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1183)
Q Consensus 943 e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s 1022 (1183)
.+.+++.|++|..++++.|++.+++|+.+|+.|.+.++ .||+|||||||||||||.+|+|+|+..++-|+.+-.++|..
T Consensus 171 kpdvty~dvggckeqieklrevve~pll~perfv~lgi-dppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 171 KPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGI-DPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred CCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCC-CCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 45789999999999999999999999999999999985 46799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCc--chHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC
Q 001031 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1183)
Q Consensus 1023 ~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~--~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1183)
+|+|+....++.+|++|+..+-||||+||||.+.+.|+.. +......+.+.+++++++|+.++ .++-|+++||+|+
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr--gnikvlmatnrpd 327 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR--GNIKVLMATNRPD 327 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC--CCeEEEeecCCCC
Confidence 9999999999999999999999999999999999888654 34445567778899999999765 7899999999999
Q ss_pred CCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHH
Q 001031 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREIL 1174 (1183)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~l 1174 (1183)
.||++++| |+++.++|.+|+.+.|..||+.+.+.+....++-++.||+++..-+|++|+.+|.+|.+.|++.-.
T Consensus 328 tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarr 403 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARR 403 (435)
T ss_pred CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHh
Confidence 99999999 999999999999999999999999999988999999999999999999999999999999987643
No 25
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=4.6e-30 Score=299.27 Aligned_cols=227 Identities=42% Similarity=0.723 Sum_probs=203.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001031 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1183)
Q Consensus 944 ~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~ 1023 (1183)
+..+|+||+|++++++.|.+.+.+|+.+++.|...++ .++++||||||||||||++|+++|++++.+|+.++++++...
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~-~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~ 204 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGI-EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK 204 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh
Confidence 4679999999999999999999999999999998874 455899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcc--hHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCC
Q 001031 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1183)
Q Consensus 1024 ~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~--~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~ 1101 (1183)
|.|+.+..++.+|..|+...|+||||||||.+++.+.... ......+.+.+++..++++.. ..+++||+|||.++.
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aTn~~~~ 282 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP--RGNVKIIAATNRIDI 282 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC--CCCEEEEEecCChhh
Confidence 9999999999999999999999999999999987654322 122345566678877887653 357999999999999
Q ss_pred CcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1102 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1102 Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
++++++| ||+..|.|++|+.++|.+||+.++.+..+..+.++..||..|+||+|+||+.+|++|++.|+++.
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~ 356 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD 356 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999998 99999999999999999999999998888888999999999999999999999999999998874
No 26
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.1e-30 Score=306.92 Aligned_cols=230 Identities=42% Similarity=0.643 Sum_probs=211.8
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001031 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1183)
Q Consensus 943 e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s 1022 (1183)
...++|.|+.|.+++++++.+.|.. ++.|..|...+. +-|+|+||+||||||||.||+++|.+.+.||+.++.+++..
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGa-kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe 221 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 221 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhccc-ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh
Confidence 4478999999999999999999985 888999988875 66799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCC--cchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC
Q 001031 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1183)
Q Consensus 1023 ~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~--~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1183)
.++|-....+|.+|..|++++||||||||||.+..+|.. .+.+....+.+++++.++||+. .+..|+||++||+++
T Consensus 222 mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~--~~~gviviaaTNRpd 299 (596)
T COG0465 222 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG--GNEGVIVIAATNRPD 299 (596)
T ss_pred hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC--CCCceEEEecCCCcc
Confidence 999999999999999999999999999999999877642 2445556678999999999997 347899999999999
Q ss_pred CCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHhh
Q 001031 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEK 1176 (1183)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~le~ 1176 (1183)
.||++++| ||++.+.++.||...|++|++.+..+..+..++++..+|+.|.||+|+||.+++++|+..+.|+....
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~ 377 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKE 377 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCee
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999986433
No 27
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=1.4e-29 Score=297.44 Aligned_cols=227 Identities=39% Similarity=0.650 Sum_probs=205.2
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001031 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1183)
Q Consensus 944 ~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~ 1023 (1183)
+..+|+||+|++.+++.|.+.+.+|+.+++.|...++. ++.++|||||||||||++|++||++++.+|+.+..+++...
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~-~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k 256 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIK-PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQK 256 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC-CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhh
Confidence 46799999999999999999999999999999988854 66899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCC--cchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCC
Q 001031 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1183)
Q Consensus 1024 ~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~--~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~ 1101 (1183)
|.|+.+..++.+|..|....|+||||||||.++.++.. .+......+.+.+++..++++... .++.||+|||+++.
T Consensus 257 ~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~--~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 257 YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR--GDVKVIMATNRIES 334 (438)
T ss_pred hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc--CCeEEEEecCChHH
Confidence 99999999999999999999999999999999876642 222333455667788888887533 57999999999999
Q ss_pred CcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1102 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1102 Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
|+++++| ||++.|+|+.|+.++|.+||+.++.+..+..++++..++..++||+|+||+++|++|++.|+++.
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~ 408 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER 408 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999997 99999999999999999999999999888889999999999999999999999999999999885
No 28
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.96 E-value=9.6e-29 Score=296.46 Aligned_cols=227 Identities=42% Similarity=0.661 Sum_probs=202.2
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001031 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1183)
Q Consensus 942 ~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~ 1021 (1183)
..+.++|+||+|++++++++.+.+.. +.+++.|.+.+ ..+++++||+||||||||+||++||++++.+|+.++++++.
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g-~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLG-AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcC-CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 35578999999999999999998875 78888888766 45668999999999999999999999999999999999998
Q ss_pred cccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCc--chHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCC
Q 001031 1022 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1183)
Q Consensus 1022 s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~--~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p 1099 (1183)
..+.|..++.++.+|..|+...|+||||||||.++..+... ........++++|+..++++... .+++||+|||++
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~--~~v~vI~aTn~~ 203 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN--TGVIVIAATNRP 203 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC--CCeEEEEecCCh
Confidence 88999999999999999999999999999999998766432 22334457888999999987543 579999999999
Q ss_pred CCCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHH
Q 001031 1100 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIRE 1172 (1183)
Q Consensus 1100 ~~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire 1172 (1183)
+.||++++| ||++.+.+++|+.++|.+|++.++....+..+.++..+|..+.||+++||.++|++|+..++++
T Consensus 204 ~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~ 278 (495)
T TIGR01241 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARK 278 (495)
T ss_pred hhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999998 9999999999999999999999998877777889999999999999999999999999887765
No 29
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=8.3e-28 Score=277.96 Aligned_cols=228 Identities=44% Similarity=0.736 Sum_probs=201.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001031 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1183)
Q Consensus 943 e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s 1022 (1183)
.+..+|+||+|++++++.|.+++..|+.+++.|...++. +++++||+||||||||++|+++|++++.+|+.+.+.++..
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 356789999999999999999999999999999988754 5689999999999999999999999999999999888888
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcc--hHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC
Q 001031 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1183)
Q Consensus 1023 ~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~--~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1183)
.+.|+....++.+|..++...|+||||||||.++..+.... ......+.+.+++..++++.. ..++.||+|||.++
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP--RGNVKVIAATNRPD 272 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEecCChh
Confidence 89999999999999999999999999999999976554321 122334556677777777643 25799999999999
Q ss_pred CCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
.+++++++ ||++.+.|+.|+.++|.+||+.++....+..+.++..|+..++||+|+||.++|++|++.|+++.
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~ 347 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE 347 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999998 99999999999999999999999988887778899999999999999999999999999999875
No 30
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.95 E-value=2.6e-27 Score=281.79 Aligned_cols=230 Identities=31% Similarity=0.541 Sum_probs=193.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------E
Q 001031 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN----------F 1012 (1183)
Q Consensus 943 e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p----------f 1012 (1183)
.+.++|+||+|++..++++++.+.+|+.+++.|...++ ++++++|||||||||||++|+++|++++.+ |
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl-~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDL-KPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccC-CCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 34689999999999999999999999999999998774 456899999999999999999999998654 5
Q ss_pred EEEecCccccccccchHHHHHHHHHHHhcc----CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCC
Q 001031 1013 INISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1088 (1183)
Q Consensus 1013 i~I~~s~L~s~~~GesE~~Ir~lF~~A~k~----~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~ 1088 (1183)
+.+..+++.+.|.|+.+..++.+|..|+.. .|+||||||||.++..+.........+.++++|+..++++... .
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~--~ 332 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL--D 332 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC--C
Confidence 667778888999999999999999988764 6999999999999987765444455577889999999998643 5
Q ss_pred CEEEEEecCCCCCCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhc-cC---------CChhhHHHHHHH-------
Q 001031 1089 RVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKE-EL---------ASDVDLEGIANM------- 1149 (1183)
Q Consensus 1089 ~VlVIaTTN~p~~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~-~l---------~~didl~~LA~~------- 1149 (1183)
+++||+|||+++.||++++| ||+..|+|+.|+.++|.+||+.++... .+ ....++..+++.
T Consensus 333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a 412 (512)
T TIGR03689 333 NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYA 412 (512)
T ss_pred ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 79999999999999999999 999999999999999999999998652 22 112223333322
Q ss_pred ----------------------cCCCcHHHHHHHHHHHHHHhHHHHHh
Q 001031 1150 ----------------------ADGYSGSDLKNLCVTAAHCPIREILE 1175 (1183)
Q Consensus 1150 ----------------------TeGySg~DL~~L~~~Aa~~Aire~le 1175 (1183)
++.+||++|+++|..|...|+++.++
T Consensus 413 ~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~ 460 (512)
T TIGR03689 413 TSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHIT 460 (512)
T ss_pred hhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999999999988874
No 31
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.9e-28 Score=299.25 Aligned_cols=309 Identities=30% Similarity=0.427 Sum_probs=243.8
Q ss_pred hhhccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCC-CCcceecccchhhhHHHHH
Q 001031 830 LKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKLKISTESIMYGLNILQ 908 (1183)
Q Consensus 830 ~~gR~~Il~IHT~l~~~~l~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~-~~kl~Id~~sIkv~~~dF~ 908 (1183)
...+..+.++|++.|. ..+...+..+.+|.+..+...+..+......+.+..++. ..++..+.........+++
T Consensus 176 ~~~s~~~~~~~p~~~~-----~~~r~~~~s~~~~~~~~~~~~~~~~~~i~~~~s~~~~~~~~~~~~t~~~~~~~~~~~~~ 250 (1080)
T KOG0732|consen 176 INDSDSRDHVPPGGRQ-----LTKRGQVQSRLHMHKSSGDTERSRSLRIESWSSGKNLQSLFDKLNTKGLQTAGLRVQKE 250 (1080)
T ss_pred cccccchhccCCCCch-----hhhhhhhcccccccccccchhhhhhhhhhhcccccccchhhhhhhcCccccchhhcccc
Confidence 4456667777766443 455566677777877777777777666655555544433 2222211111111111111
Q ss_pred hhhhhhhhhhhhhhcccChhHHHHHHhcCC-CCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceE
Q 001031 909 GIQSESKSLKKSLKDVVTENEFEKKLLADV-IPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGI 987 (1183)
Q Consensus 909 ~al~eikp~~~slk~~v~~~E~ek~ll~~i-Ip~~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gV 987 (1183)
.+. ....+..+.|++|||++.++++|++.|..|+.+|+.|.+.++. ||+||
T Consensus 251 ---------------------------~d~dp~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~it-pPrgv 302 (1080)
T KOG0732|consen 251 ---------------------------ADSDPLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNIT-PPRGV 302 (1080)
T ss_pred ---------------------------cccCchhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccC-CCcce
Confidence 111 1123446799999999999999999999999999999988865 56999
Q ss_pred EEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCc
Q 001031 988 LLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP 1062 (1183)
Q Consensus 988 LL~GPPGTGKT~LAkAIA~eL-----g~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~ 1062 (1183)
|++||||||||.+|+++|..+ ...|+.-.+++..++|+|+.|..++.+|+.|++.+|+|||+||||.|.+.+...
T Consensus 303 L~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk 382 (1080)
T KOG0732|consen 303 LFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK 382 (1080)
T ss_pred eecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch
Confidence 999999999999999999887 466777788999999999999999999999999999999999999998777553
Q ss_pred chHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhcc-CCC
Q 001031 1063 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEE-LAS 1139 (1183)
Q Consensus 1063 ~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~-l~~ 1139 (1183)
..+....+..+|+.+|+|+..+ +.|+||+|||+++.++++++| ||++.+++++|+.+.|.+|+..+..+.. ...
T Consensus 383 -qEqih~SIvSTLLaLmdGldsR--gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~ 459 (1080)
T KOG0732|consen 383 -QEQIHASIVSTLLALMDGLDSR--GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPIS 459 (1080)
T ss_pred -HHHhhhhHHHHHHHhccCCCCC--CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCC
Confidence 3445678899999999999765 789999999999999999999 9999999999999999999999876643 235
Q ss_pred hhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHH
Q 001031 1140 DVDLEGIANMADGYSGSDLKNLCVTAAHCPIREIL 1174 (1183)
Q Consensus 1140 didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~l 1174 (1183)
..-+..||..+.||-|+||+.||.+|++.++++-.
T Consensus 460 ~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 460 RELLLWLAEETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence 55688999999999999999999999999998753
No 32
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.8e-28 Score=268.27 Aligned_cols=230 Identities=37% Similarity=0.698 Sum_probs=207.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~ 1024 (1183)
..+|++++|...+..++++.+.+|+.+|++|.+.++ +||.++|||||||+|||.+|+++|..++++|+.+..+.+.+++
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgI-k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGI-KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCC-CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 568999999999999999999999999999998774 5779999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcc--hHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCC
Q 001031 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1183)
Q Consensus 1025 ~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~--~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~L 1102 (1183)
.|++.+.|++.|..|+.+.|||||+||||.+.+++.+.. ......+.+.+++.+|+++.. ..+|-+|+|||+++.|
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~--l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT--LHRVKTIMATNRPDTL 284 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh--cccccEEEecCCcccc
Confidence 999999999999999999999999999999988775432 233455666677788888754 4789999999999999
Q ss_pred cHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHhhh
Q 001031 1103 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1177 (1183)
Q Consensus 1103 d~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~le~e 1177 (1183)
+++++| |+++.+++++|+...|..|++.+.+......+++.+.+.+..+||.|.|+++.|++|-+.++++.....
T Consensus 285 dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~v 361 (388)
T KOG0651|consen 285 DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEV 361 (388)
T ss_pred chhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHH
Confidence 999999 999999999999999999999988888778889999999999999999999999999988887765443
No 33
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.4e-27 Score=281.92 Aligned_cols=222 Identities=42% Similarity=0.681 Sum_probs=208.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~ 1024 (1183)
..+ ++++|.......+++.+.+|+.++.+|...+ .++++++|+|||||+|||++++++|++.++.++.++++++++.+
T Consensus 181 ~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g-~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 181 EVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIG-IKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred ccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcC-CCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 345 7899999999999999999999999999888 45679999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhccC-CeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCc
Q 001031 1025 FGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1183)
Q Consensus 1025 ~GesE~~Ir~lF~~A~k~~-PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld 1103 (1183)
.|+++++++.+|..|.+++ |+||||||||.+++++..... ...++..+++.+++++.. ..+++||++||+++.|+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~--~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKP--DAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcC--cCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998876444 678899999999999863 37899999999999999
Q ss_pred HHHHh-ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHH
Q 001031 1104 EAVVR-RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIRE 1172 (1183)
Q Consensus 1104 ~aLlr-RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire 1172 (1183)
++++| ||++.+.|..|+..+|.+|++.+++++++.++.++..+|..++||+|+||..+|.+|++.++++
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~ 404 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR 404 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh
Confidence 99998 9999999999999999999999999999888899999999999999999999999999999999
No 34
>CHL00176 ftsH cell division protein; Validated
Probab=99.95 E-value=2.9e-27 Score=289.17 Aligned_cols=227 Identities=40% Similarity=0.622 Sum_probs=200.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001031 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1183)
Q Consensus 943 e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s 1022 (1183)
+...+|+|++|++++++++.+.+.. +..++.|...+. .+++++||+||||||||+||+++|.+++.||+.++++++..
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~-~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGA-KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 3467999999999999999998765 778888877663 45689999999999999999999999999999999999888
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCC--cchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC
Q 001031 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1183)
Q Consensus 1023 ~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~--~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1183)
.+.|.....++.+|..|+...|+||||||||.+...+.. ...+.....++++|+..++++.. +.+++||++||+++
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~~ 332 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRVD 332 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecCchH
Confidence 888888888999999999999999999999999765532 22334456778889999988754 36799999999999
Q ss_pred CCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
.||++++| ||++.+.+++|+.++|.+||+.++.+..+..+.++..+|..+.||+++||.++|++|+..+.++.
T Consensus 333 ~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~ 407 (638)
T CHL00176 333 ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK 407 (638)
T ss_pred hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 99999998 89999999999999999999999998777788999999999999999999999999998877654
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=1.2e-25 Score=281.22 Aligned_cols=228 Identities=42% Similarity=0.742 Sum_probs=206.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001031 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1183)
Q Consensus 944 ~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~ 1023 (1183)
..++|+||+|++.+++.+++.+.+|+.++++|.+.++ .+++++|||||||||||+||++||++++.+|+.++++++.+.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi-~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGI-EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 3689999999999999999999999999999998875 466899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCc
Q 001031 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1183)
Q Consensus 1024 ~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld 1103 (1183)
+.|+.+..++.+|..|....|+||||||||.+++.+.... .+...++.++|+..++++.. ...++||++||.++.|+
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~-~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT-GEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc-chHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999987765432 23445678888888888753 36799999999999999
Q ss_pred HHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHh
Q 001031 1104 EAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILE 1175 (1183)
Q Consensus 1104 ~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~le 1175 (1183)
+++++ ||+..+.+++|+.++|.+|++.+.....+..+.++..++..++||+++||..+|+.|++.++++.+.
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~ 402 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIR 402 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99998 9999999999999999999999988887778889999999999999999999999999999998865
No 36
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.94 E-value=8.6e-26 Score=278.16 Aligned_cols=227 Identities=41% Similarity=0.626 Sum_probs=200.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001031 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1183)
Q Consensus 943 e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s 1022 (1183)
....+|+++.|.+..++.+.+.+.. +..++.|...+ ...+++|||+||||||||+++++++.+++.+|+.++++++..
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~-~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~ 223 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLG-GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcC-CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH
Confidence 3457899999999999999998876 55566665544 344578999999999999999999999999999999999988
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCC--cchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC
Q 001031 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1183)
Q Consensus 1023 ~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~--~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1183)
.+.+.....++.+|..|+...|+||||||||.+...+.. .+.+.....++++++..++++.. +..++||+|||+++
T Consensus 224 ~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p~ 301 (644)
T PRK10733 224 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPD 301 (644)
T ss_pred hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC--CCCeeEEEecCChh
Confidence 888999999999999999999999999999999876643 23344456788999999998854 36799999999999
Q ss_pred CCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
.||++++| ||++.+.+++|+.++|.+||+.++.+..+..+.++..+|+.|.||+|+||.++|++|+..|+++.
T Consensus 302 ~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~ 376 (644)
T PRK10733 302 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN 376 (644)
T ss_pred hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999998 99999999999999999999999999888888999999999999999999999999999998764
No 37
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.93 E-value=1.2e-25 Score=287.15 Aligned_cols=186 Identities=20% Similarity=0.291 Sum_probs=155.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc------------------------------------
Q 001031 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW------------------------------------ 1024 (1183)
Q Consensus 981 ~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~------------------------------------ 1024 (1183)
.+|++||||+||||||||+||+|+|.++++||+.++++++...+
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 46789999999999999999999999999999999999887543
Q ss_pred -----ccchHH--HHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcc-cCCCCEEEEEec
Q 001031 1025 -----FGEGEK--YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-KDKERVLVLAAT 1096 (1183)
Q Consensus 1025 -----~GesE~--~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~-k~~~~VlVIaTT 1096 (1183)
.+..+. .++.+|+.|++.+||||||||||.+..++. ....+++|+..|++... ....+|+|||||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds-------~~ltL~qLLneLDg~~~~~s~~~VIVIAAT 1779 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES-------NYLSLGLLVNSLSRDCERCSTRNILVIAST 1779 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc-------ceehHHHHHHHhccccccCCCCCEEEEEeC
Confidence 111222 388999999999999999999999964421 11236788888887642 234689999999
Q ss_pred CCCCCCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHh--hccCCC-hhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHH
Q 001031 1097 NRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILA--KEELAS-DVDLEGIANMADGYSGSDLKNLCVTAAHCPIR 1171 (1183)
Q Consensus 1097 N~p~~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~--k~~l~~-didl~~LA~~TeGySg~DL~~L~~~Aa~~Air 1171 (1183)
|+|+.||+|++| ||++.|.|+.|+..+|.+++..++. +..+.. ..++..+|..|.||+|+||.+||++|+..|++
T Consensus 1780 NRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAir 1859 (2281)
T CHL00206 1780 HIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISIT 1859 (2281)
T ss_pred CCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999887643 333443 35799999999999999999999999999998
Q ss_pred HH
Q 001031 1172 EI 1173 (1183)
Q Consensus 1172 e~ 1173 (1183)
+.
T Consensus 1860 q~ 1861 (2281)
T CHL00206 1860 QK 1861 (2281)
T ss_pred cC
Confidence 74
No 38
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.93 E-value=4.6e-25 Score=249.78 Aligned_cols=189 Identities=19% Similarity=0.246 Sum_probs=157.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHhc-----cCCeEEEEeCCccc
Q 001031 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASK-----IAPSVVFVDEVDSM 1055 (1183)
Q Consensus 981 ~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k-----~~PsILfIDEID~L 1055 (1183)
.++|.+++||||||||||++|++||+++|++|+.++++++.+.|+|++|+.++++|..|.. .+||||||||||.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 4678999999999999999999999999999999999999999999999999999999975 46999999999999
Q ss_pred ccCCCCcchHHHHHHH-HHHHHHhhcCCc----------ccCCCCEEEEEecCCCCCCcHHHHh--ccCcEEEecCCCHH
Q 001031 1056 LGRRENPGEHEAMRKM-KNEFMVNWDGLR----------TKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAP 1122 (1183)
Q Consensus 1056 l~~r~~~~~~e~l~~i-l~~LL~~Ldgl~----------~k~~~~VlVIaTTN~p~~Ld~aLlr--RFd~vI~I~lPd~e 1122 (1183)
++++... .....+++ ..+|+..+|+.. .....+|.||+|||+++.|+++|+| ||++.+ .+|+.+
T Consensus 225 ~g~r~~~-~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e 301 (413)
T PLN00020 225 AGRFGTT-QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTRE 301 (413)
T ss_pred CCCCCCC-CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHH
Confidence 9887642 33333444 478998887631 1235779999999999999999999 999754 589999
Q ss_pred HHHHHHHHHHhhccCCChhhHHHHHHHcCC----CcHHHHHHHHHHHHHHhHHHH
Q 001031 1123 NREKIIRVILAKEELASDVDLEGIANMADG----YSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1123 eR~eILk~iL~k~~l~~didl~~LA~~TeG----ySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
+|.+|++.++++.++. ..++..|+..+.| |.|+--..+.+++...-+.+.
T Consensus 302 ~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~~ 355 (413)
T PLN00020 302 DRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEV 355 (413)
T ss_pred HHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999998765 6888999998887 456555666666665555554
No 39
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.4e-24 Score=249.47 Aligned_cols=230 Identities=27% Similarity=0.487 Sum_probs=196.1
Q ss_pred CCCccc--ccCcHHHHHH-HHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEecCcc
Q 001031 945 GVTFDD--IGALENVKDT-LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFINISMSSI 1020 (1183)
Q Consensus 945 ~~tfdD--I~Gle~vk~~-L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-pfi~I~~s~L 1020 (1183)
...|++ |||++.--.. .+++...-+.-|+...+.++. .-+|||||||||||||.+||.|.+.+++ +--.++++++
T Consensus 215 df~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~-HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 215 DFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIK-HVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCcc-ceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 456666 8899866554 455565556667777777744 4589999999999999999999999965 3445789999
Q ss_pred ccccccchHHHHHHHHHHHhcc--------CCeEEEEeCCcccccCCCCcch-HHHHHHHHHHHHHhhcCCcccCCCCEE
Q 001031 1021 TSKWFGEGEKYVKAVFSLASKI--------APSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVL 1091 (1183)
Q Consensus 1021 ~s~~~GesE~~Ir~lF~~A~k~--------~PsILfIDEID~Ll~~r~~~~~-~e~l~~il~~LL~~Ldgl~~k~~~~Vl 1091 (1183)
+++|+|++|.+++.+|..|... .-.||++||||.++.+|++..+ ......+.++|+..+||...- .+|+
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL--NNIL 371 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL--NNIL 371 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh--hcEE
Confidence 9999999999999999988532 2459999999999988876544 557788999999999998654 6799
Q ss_pred EEEecCCCCCCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhc----cCCChhhHHHHHHHcCCCcHHHHHHHHHHH
Q 001031 1092 VLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKE----ELASDVDLEGIANMADGYSGSDLKNLCVTA 1165 (1183)
Q Consensus 1092 VIaTTN~p~~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~----~l~~didl~~LA~~TeGySg~DL~~L~~~A 1165 (1183)
||+-||+.+.+|++++| ||...+++.+||...|.+|++.+.+++ .+..++|+++||.+|..|||++|.-|++.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999999 999999999999999999999998774 356899999999999999999999999999
Q ss_pred HHHhHHHHHhhh
Q 001031 1166 AHCPIREILEKE 1177 (1183)
Q Consensus 1166 a~~Aire~le~e 1177 (1183)
.-.|+.|.+...
T Consensus 452 ~S~A~nR~vk~~ 463 (744)
T KOG0741|consen 452 QSFAMNRHVKAG 463 (744)
T ss_pred HHHHHHhhhccC
Confidence 999999987655
No 40
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.1e-22 Score=227.50 Aligned_cols=232 Identities=23% Similarity=0.300 Sum_probs=183.9
Q ss_pred ccccccccccccchhhHHHHHHhhhhhhccccccccccC-CCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001031 448 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYAS-DLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1183)
Q Consensus 448 ~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~-~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilD 526 (1183)
.-+|||+..--. |....=|.++.-..|+|++. |-+ .+.| -..+||.|||| ....+||||.||+-+|.++=+=
T Consensus 145 ~PdvtY~dIGGL--~~Qi~EirE~VELPL~~PEl--F~~~GI~P-PKGVLLYGPPG--TGKTLLAkAVA~~T~AtFIrvv 217 (406)
T COG1222 145 KPDVTYEDIGGL--DEQIQEIREVVELPLKNPEL--FEELGIDP-PKGVLLYGPPG--TGKTLLAKAVANQTDATFIRVV 217 (406)
T ss_pred CCCCChhhccCH--HHHHHHHHHHhcccccCHHH--HHHcCCCC-CCceEeeCCCC--CcHHHHHHHHHhccCceEEEec
Confidence 356788877776 77777889999999999997 544 3433 35799999999 6899999999999999987442
Q ss_pred cCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCce-
Q 001031 527 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV- 605 (1183)
Q Consensus 527 s~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv- 605 (1183)
.+ .-|
T Consensus 218 gS--------------------------------------------------------------------------ElVq 223 (406)
T COG1222 218 GS--------------------------------------------------------------------------ELVQ 223 (406)
T ss_pred cH--------------------------------------------------------------------------HHHH
Confidence 10 012
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchh
Q 001031 606 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 685 (1183)
Q Consensus 606 k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~ 685 (1183)
||+|-.
T Consensus 224 KYiGEG-------------------------------------------------------------------------- 229 (406)
T COG1222 224 KYIGEG-------------------------------------------------------------------------- 229 (406)
T ss_pred HHhccc--------------------------------------------------------------------------
Confidence 566631
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEEcChhhhhc--------CChhhHHHHHHHHhcC-----CCCEEEEEeccCCCcccc
Q 001031 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKE 752 (1183)
Q Consensus 686 ~k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~--------~~~~~~~~i~~~L~~L-----~g~vivIgs~~~~d~~k~ 752 (1183)
-+++.+||+++.+ +.|.|||||+||-.-. +..|.--.+-..|..| +|+|-||.|||
T Consensus 230 -aRlVRelF~lAre---kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATN------- 298 (406)
T COG1222 230 -ARLVRELFELARE---KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATN------- 298 (406)
T ss_pred -hHHHHHHHHHHhh---cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecC-------
Confidence 2458999999999 9999999999999655 2334433444444444 56999999999
Q ss_pred cCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhh
Q 001031 753 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 830 (1183)
Q Consensus 753 k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~ 830 (1183)
+||-+|| |||| ||+|.+||+|||+
T Consensus 299 -----------------------R~D~LDP-------------------------------ALLRPGR~DRkIEfplPd~ 324 (406)
T COG1222 299 -----------------------RPDILDP-------------------------------ALLRPGRFDRKIEFPLPDE 324 (406)
T ss_pred -----------------------CccccCh-------------------------------hhcCCCcccceeecCCCCH
Confidence 6777787 9999 9999999999999
Q ss_pred hhccchhHHHHH-hhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhHHHHHh
Q 001031 831 KGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 909 (1183)
Q Consensus 831 ~gR~~Il~IHT~-l~~~~l~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~dF~~ 909 (1183)
.||.+||+|||+ |.- -+++|++.||..|.|++||||+++|++|--+|+.... ..++..||+.
T Consensus 325 ~gR~~Il~IHtrkM~l--~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R---------------~~Vt~~DF~~ 387 (406)
T COG1222 325 EGRAEILKIHTRKMNL--ADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR---------------DEVTMEDFLK 387 (406)
T ss_pred HHHHHHHHHHhhhccC--ccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc---------------CeecHHHHHH
Confidence 999999999997 542 2789999999999999999999999999999997432 2457889998
Q ss_pred hhhhhhh
Q 001031 910 IQSESKS 916 (1183)
Q Consensus 910 al~eikp 916 (1183)
+..++..
T Consensus 388 Av~KV~~ 394 (406)
T COG1222 388 AVEKVVK 394 (406)
T ss_pred HHHHHHh
Confidence 8776643
No 41
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2e-22 Score=226.11 Aligned_cols=250 Identities=17% Similarity=0.222 Sum_probs=199.0
Q ss_pred CccccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001031 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1183)
Q Consensus 447 ~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilD 526 (1183)
++.+|.||..--. ++.|.+|-+|+...+..++| ...|...++.|||.|||| ....|||||+|.+.|.-+.-+-
T Consensus 205 ~np~ikW~DIagl--~~AK~lL~EAVvlPi~mPe~---F~GirrPWkgvLm~GPPG--TGKTlLAKAvATEc~tTFFNVS 277 (491)
T KOG0738|consen 205 RNPNIKWDDIAGL--HEAKKLLKEAVVLPIWMPEF---FKGIRRPWKGVLMVGPPG--TGKTLLAKAVATECGTTFFNVS 277 (491)
T ss_pred cCCCcChHhhcch--HHHHHHHHHHHhhhhhhHHH---HhhcccccceeeeeCCCC--CcHHHHHHHHHHhhcCeEEEec
Confidence 4667999988777 89999999999999987775 568889999999999999 6899999999999997776665
Q ss_pred cCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCcee
Q 001031 527 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 606 (1183)
Q Consensus 527 s~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk 606 (1183)
|+.|...|.
T Consensus 278 sstltSKwR----------------------------------------------------------------------- 286 (491)
T KOG0738|consen 278 SSTLTSKWR----------------------------------------------------------------------- 286 (491)
T ss_pred hhhhhhhhc-----------------------------------------------------------------------
Confidence 544333222
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhH
Q 001031 607 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 686 (1183)
Q Consensus 607 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 686 (1183)
.+.
T Consensus 287 -----------------------------------------------------------------------------GeS 289 (491)
T KOG0738|consen 287 -----------------------------------------------------------------------------GES 289 (491)
T ss_pred -----------------------------------------------------------------------------cch
Confidence 223
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEEcChhhhhcC---------ChhhHHHHHHHHhcCCC---C---EEEEEeccCCCccc
Q 001031 687 KLAINELFEVALNESKSSPLIVFVKDIEKSLTG---------NNDAYGALKSKLENLPS---N---VVVIGSHTQLDSRK 751 (1183)
Q Consensus 687 k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~---------~~~~~~~i~~~L~~L~g---~---vivIgs~~~~d~~k 751 (1183)
.-++..|||++.- ..|.+||||+||.+..+ +.++.+-|--.++.+.+ + |.|+.|||
T Consensus 290 EKlvRlLFemARf---yAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN------ 360 (491)
T KOG0738|consen 290 EKLVRLLFEMARF---YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN------ 360 (491)
T ss_pred HHHHHHHHHHHHH---hCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccC------
Confidence 3458889999988 89999999999997662 23333333333444432 5 99999999
Q ss_pred ccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHHHHHHHHhhhhhhhh
Q 001031 752 EKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLK 831 (1183)
Q Consensus 752 ~k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~ 831 (1183)
+|.++|. |||||||..+|++|||.+
T Consensus 361 ------------------------~PWdiDE-------------------------------AlrRRlEKRIyIPLP~~~ 385 (491)
T KOG0738|consen 361 ------------------------FPWDIDE-------------------------------ALRRRLEKRIYIPLPDAE 385 (491)
T ss_pred ------------------------CCcchHH-------------------------------HHHHHHhhheeeeCCCHH
Confidence 8888875 999999999999999999
Q ss_pred hccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchh--hhHHHHH
Q 001031 832 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIM--YGLNILQ 908 (1183)
Q Consensus 832 gR~~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIk--v~~~dF~ 908 (1183)
+|..+++|- |+...+ ++++++.||+.+.||+|+||.-+|+.|.-+++.|+..-.....-..+..+.++ +...||+
T Consensus 386 ~R~~Li~~~--l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe 463 (491)
T KOG0738|consen 386 ARSALIKIL--LRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFE 463 (491)
T ss_pred HHHHHHHHh--hccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHH
Confidence 999999997 777666 88999999999999999999999999999999988654433333444455555 7888999
Q ss_pred hhhhhhhhh
Q 001031 909 GIQSESKSL 917 (1183)
Q Consensus 909 ~al~eikp~ 917 (1183)
.++..+.+.
T Consensus 464 ~Al~~v~pS 472 (491)
T KOG0738|consen 464 EALRKVRPS 472 (491)
T ss_pred HHHHHcCcC
Confidence 988777664
No 42
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.86 E-value=1e-19 Score=227.79 Aligned_cols=206 Identities=20% Similarity=0.255 Sum_probs=143.7
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc---
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--- 1023 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l---~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~--- 1023 (1183)
.|+|++.+++.+.+.+... +.++ .+|...+||+||+|||||+||+++|..++.+++.++++++...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 5789999999998877631 1111 2354468999999999999999999999999999999875431
Q ss_pred --cccchHH-----HHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcc-------cCCCC
Q 001031 1024 --WFGEGEK-----YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-------KDKER 1089 (1183)
Q Consensus 1024 --~~GesE~-----~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~-------k~~~~ 1089 (1183)
.+|.... ....+....++.+.+||||||||.+ . ..+.+.|+..++.... .+-.+
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----~-------~~~~~~Ll~~ld~g~~~d~~g~~vd~~~ 594 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----H-------PDIYNILLQVMDYATLTDNNGRKADFRN 594 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----C-------HHHHHHHHHhhccCeeecCCCcccCCCC
Confidence 2222111 1123344445667799999999977 2 2344455555543211 11256
Q ss_pred EEEEEecCCC-------------------------CCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhc---------
Q 001031 1090 VLVLAATNRP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE--------- 1135 (1183)
Q Consensus 1090 VlVIaTTN~p-------------------------~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~--------- 1135 (1183)
++||+|||.. ..+.++|+.||+.++.|...+.++..+|++..+.+.
T Consensus 595 ~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~ 674 (731)
T TIGR02639 595 VILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNI 674 (731)
T ss_pred CEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8899999753 125678899999999999999999999999988641
Q ss_pred cCC-ChhhHHHHHHH--cCCCcHHHHHHHHHHHHHHhHHHHHh
Q 001031 1136 ELA-SDVDLEGIANM--ADGYSGSDLKNLCVTAAHCPIREILE 1175 (1183)
Q Consensus 1136 ~l~-~didl~~LA~~--TeGySg~DL~~L~~~Aa~~Aire~le 1175 (1183)
.+. ++..++.|+.. ...|..+.|+.+++.-...++-+.+-
T Consensus 675 ~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~l 717 (731)
T TIGR02639 675 KLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEIL 717 (731)
T ss_pred eEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHHH
Confidence 111 44456777765 33567789999999988888766643
No 43
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.7e-20 Score=211.02 Aligned_cols=232 Identities=21% Similarity=0.319 Sum_probs=189.6
Q ss_pred HHHHHhhcccCCCccccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHH
Q 001031 435 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 514 (1183)
Q Consensus 435 ~k~~l~~~i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKAL 514 (1183)
|+.-+...+|.+++|.|+|++.--. |.+|+.|-+..-..|+++++-+ ..+|...+..|||.|||| .-..|||||+
T Consensus 73 ~E~~i~s~~v~p~~I~v~f~DIggL--e~v~~~L~e~VilPlr~pelF~-~g~Ll~p~kGiLL~GPpG--~GKTmlAKA~ 147 (386)
T KOG0737|consen 73 YEKRIASDVVPPSEIGVSFDDIGGL--EEVKDALQELVILPLRRPELFA-KGKLLRPPKGILLYGPPG--TGKTMLAKAI 147 (386)
T ss_pred HHHHhhhcccchhhceeehhhccch--HHHHHHHHHHHhhcccchhhhc-ccccccCCccceecCCCC--chHHHHHHHH
Confidence 5666788999999999999999998 9999999999999999999855 347777999999999999 7899999999
Q ss_pred HhhcCCeEEEEecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccc
Q 001031 515 AKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASS 594 (1183)
Q Consensus 515 A~~f~a~LLilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 594 (1183)
|+.-||.+.-|+.+.+-+.|-.|
T Consensus 148 Akeaga~fInv~~s~lt~KWfgE--------------------------------------------------------- 170 (386)
T KOG0737|consen 148 AKEAGANFINVSVSNLTSKWFGE--------------------------------------------------------- 170 (386)
T ss_pred HHHcCCCcceeeccccchhhHHH---------------------------------------------------------
Confidence 99999998888776554433321
Q ss_pred cccccccCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCccccccc
Q 001031 595 KNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASS 674 (1183)
Q Consensus 595 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~ 674 (1183)
T Consensus 171 -------------------------------------------------------------------------------- 170 (386)
T KOG0737|consen 171 -------------------------------------------------------------------------------- 170 (386)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCcchhHHHHHHHHHHHHhhccCCCCEEEEEcChhhhhcC----ChhhHHH----HHHHHhcCC----CCEEEEE
Q 001031 675 LRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG----NNDAYGA----LKSKLENLP----SNVVVIG 742 (1183)
Q Consensus 675 ~~~d~~~~~~~~k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~----~~~~~~~----i~~~L~~L~----g~vivIg 742 (1183)
..=++.++|-+.. |-+|.||||++||..|.. .-|+.+. |...++.|. .+|+|+|
T Consensus 171 -----------~eKlv~AvFslAs---Kl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlg 236 (386)
T KOG0737|consen 171 -----------AQKLVKAVFSLAS---KLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLG 236 (386)
T ss_pred -----------HHHHHHHHHhhhh---hcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEe
Confidence 2222455555554 589999999999998862 2344443 445566663 2699999
Q ss_pred eccCCCcccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHHHHHHH
Q 001031 743 SHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQ 822 (1183)
Q Consensus 743 s~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq 822 (1183)
||| +|-++| +|.+||+.+.
T Consensus 237 ATN------------------------------RP~DlD-------------------------------eAiiRR~p~r 255 (386)
T KOG0737|consen 237 ATN------------------------------RPFDLD-------------------------------EAIIRRLPRR 255 (386)
T ss_pred CCC------------------------------CCccHH-------------------------------HHHHHhCcce
Confidence 999 665665 4999999999
Q ss_pred HhhhhhhhhhccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccC
Q 001031 823 LERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSE 885 (1183)
Q Consensus 823 ~e~~Lpd~~gR~~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~ 885 (1183)
|++++|+...|..||++- +..-.+ +++|+.++|..|+||+|.||..+|+.|+.+.++....
T Consensus 256 f~V~lP~~~qR~kILkvi--Lk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 256 FHVGLPDAEQRRKILKVI--LKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred eeeCCCchhhHHHHHHHH--hcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 999999999999999985 666666 8899999999999999999999999999988765543
No 44
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.81 E-value=5.5e-18 Score=211.24 Aligned_cols=209 Identities=17% Similarity=0.240 Sum_probs=143.1
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-----cc
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-----KW 1024 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s-----~~ 1024 (1183)
.|+|++++++.|.+.+...... + ..-.+|...+||+||||||||++|+++|..++.+|+.++|+++.. ..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~g--l---~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~L 533 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAG--L---GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRL 533 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcc--c---cCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHH
Confidence 5899999999999988642110 0 011345567999999999999999999999999999999987532 23
Q ss_pred ccchHHHH----HHHH-HHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcc-------cCCCCEEE
Q 001031 1025 FGEGEKYV----KAVF-SLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-------KDKERVLV 1092 (1183)
Q Consensus 1025 ~GesE~~I----r~lF-~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~-------k~~~~VlV 1092 (1183)
+|....++ ...+ ...++.+.+||||||||.+- ..+.+.|+..++.... ..-.++++
T Consensus 534 iG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~------------~~v~~~LLq~ld~G~ltd~~g~~vd~rn~ii 601 (758)
T PRK11034 534 IGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH------------PDVFNLLLQVMDNGTLTDNNGRKADFRNVVL 601 (758)
T ss_pred cCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhh------------HHHHHHHHHHHhcCeeecCCCceecCCCcEE
Confidence 33221111 1233 33355566999999999871 2345555555542211 11257889
Q ss_pred EEecCCC-------------------------CCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhc-------cCC--
Q 001031 1093 LAATNRP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-------ELA-- 1138 (1183)
Q Consensus 1093 IaTTN~p-------------------------~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~-------~l~-- 1138 (1183)
|+|||.- ..+.++|+.|++.++.|+..+.++..+|+..++.+. ++.
T Consensus 602 I~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~ 681 (758)
T PRK11034 602 VMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLE 681 (758)
T ss_pred EEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCce
Confidence 9999831 236689999999999999999999999998877531 221
Q ss_pred -ChhhHHHHHHHc--CCCcHHHHHHHHHHHHHHhHHHHHh
Q 001031 1139 -SDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIREILE 1175 (1183)
Q Consensus 1139 -~didl~~LA~~T--eGySg~DL~~L~~~Aa~~Aire~le 1175 (1183)
++..++.|+... ..|-.+.|+.+++.-...++.+.+-
T Consensus 682 ~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~il 721 (758)
T PRK11034 682 VSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELL 721 (758)
T ss_pred ECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 344466677543 2455688999888888888776643
No 45
>CHL00181 cbbX CbbX; Provisional
Probab=99.78 E-value=7.9e-18 Score=189.48 Aligned_cols=217 Identities=16% Similarity=0.243 Sum_probs=160.4
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCC--CceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecCcc
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKP--CKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSSI 1020 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP--~~gVLL~GPPGTGKT~LAkAIA~eL-------g~pfi~I~~s~L 1020 (1183)
+++|++.+|+++.+++.+ +..++.+.+.++..+ ..++||+||||||||++|+++|+.+ ..+++.++..++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 24 ELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred hcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 799999999999998876 333444444444333 3459999999999999999999876 236899999999
Q ss_pred ccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCC-
Q 001031 1021 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP- 1099 (1183)
Q Consensus 1021 ~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p- 1099 (1183)
.+.++|..+..+..+|..|. ++||||||++.|...+.. ......+.+.|+..++.. ...++||++++..
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~---~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~~ 172 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE---RDYGSEAIEILLQVMENQ----RDDLVVIFAGYKDR 172 (287)
T ss_pred HHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 98899988777788887764 489999999998643221 122345566666666542 2557888887542
Q ss_pred ----CCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHH----c--CCCc-HHHHHHHHHHHHH
Q 001031 1100 ----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANM----A--DGYS-GSDLKNLCVTAAH 1167 (1183)
Q Consensus 1100 ----~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~----T--eGyS-g~DL~~L~~~Aa~ 1167 (1183)
..+++++.+||+.+|.|+.++.+++.+|++.++.+.... .+.....+... . ..|. +++++++++.|..
T Consensus 173 ~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 173 MDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred HHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 245699999999999999999999999999999875432 22223333332 1 3445 7999999999999
Q ss_pred HhHHHHHhhh
Q 001031 1168 CPIREILEKE 1177 (1183)
Q Consensus 1168 ~Aire~le~e 1177 (1183)
+...|+....
T Consensus 253 ~~~~r~~~~~ 262 (287)
T CHL00181 253 RQANRIFESG 262 (287)
T ss_pred HHHHHHHcCC
Confidence 9999987664
No 46
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.77 E-value=2.4e-18 Score=168.18 Aligned_cols=130 Identities=38% Similarity=0.644 Sum_probs=114.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHhccC-CeEEEEeCCcccccCCCCcchH
Q 001031 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEH 1065 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~-PsILfIDEID~Ll~~r~~~~~~ 1065 (1183)
|||+||||||||++|+.+|+.++.+++.+++.++.+.+.+..++.+..+|..+.... |+||||||+|.+++.. .....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 799999999999999999999999999999999998888999999999999999887 9999999999998766 33345
Q ss_pred HHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHH-hccCcEEEecC
Q 001031 1066 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVV-RRLPRRLMVNL 1118 (1183)
Q Consensus 1066 e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLl-rRFd~vI~I~l 1118 (1183)
.....+.+.++..++..... ..+++||+|||.++.+++.++ +||+.++++++
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 55667788888888876543 367999999999999999999 99998888864
No 47
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.77 E-value=1.1e-17 Score=185.61 Aligned_cols=218 Identities=16% Similarity=0.229 Sum_probs=158.7
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCC--CCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecC
Q 001031 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLT--KPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMS 1018 (1183)
Q Consensus 948 fdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~--kP~~gVLL~GPPGTGKT~LAkAIA~eL-------g~pfi~I~~s 1018 (1183)
+++++|++++|++|++++.++....... +.+.. ....++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~-~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRK-EEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHH-HcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 5689999999999999887654432222 22222 223569999999999999999999875 3478889999
Q ss_pred ccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCC
Q 001031 1019 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1183)
Q Consensus 1019 ~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~ 1098 (1183)
++.+.++|+.+..++.+|..|. ++||||||+|.|..... .......++.++..++.. ...+++|+++..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~----~~~~~~~i~~Ll~~~e~~----~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE----KDFGKEAIDTLVKGMEDN----RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc----cchHHHHHHHHHHHHhcc----CCCEEEEecCCc
Confidence 9999999999888999998774 48999999999852111 112234556666666543 245666666543
Q ss_pred C-----CCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHc-------C--CCcHHHHHHHHH
Q 001031 1099 P-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA-------D--GYSGSDLKNLCV 1163 (1183)
Q Consensus 1099 p-----~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~T-------e--GySg~DL~~L~~ 1163 (1183)
. ..+++++.+||+..+.++.++.+++.+|++.++...... ++..+..|+... . .-.++.+++++.
T Consensus 153 ~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e 232 (261)
T TIGR02881 153 DEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIE 232 (261)
T ss_pred chhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 2 247789999999899999999999999999999876542 333344554321 1 245789999999
Q ss_pred HHHHHhHHHHHhhh
Q 001031 1164 TAAHCPIREILEKE 1177 (1183)
Q Consensus 1164 ~Aa~~Aire~le~e 1177 (1183)
.|..+...+++.++
T Consensus 233 ~a~~~~~~r~~~~~ 246 (261)
T TIGR02881 233 KAIRRQAVRLLDKS 246 (261)
T ss_pred HHHHHHHHHHhccC
Confidence 99999888877554
No 48
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.5e-18 Score=191.72 Aligned_cols=225 Identities=27% Similarity=0.360 Sum_probs=173.2
Q ss_pred cCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------
Q 001031 936 ADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------- 1008 (1183)
Q Consensus 936 ~~iIp~~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL------- 1008 (1183)
.+.+|..+..--|+.++--..+|+.|..++...+...+.-....+..-.+=|||+||||||||+|++|+|+.+
T Consensus 129 ~w~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~ 208 (423)
T KOG0744|consen 129 HWYLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDR 208 (423)
T ss_pred heeccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCc
Confidence 4567776667778888888899999999988766655544444444444558999999999999999999988
Q ss_pred --CCcEEEEecCccccccccchHHHHHHHHHHHhcc---C--CeEEEEeCCcccccCCCC---cchHHHHHHHHHHHHHh
Q 001031 1009 --GANFINISMSSITSKWFGEGEKYVKAVFSLASKI---A--PSVVFVDEVDSMLGRREN---PGEHEAMRKMKNEFMVN 1078 (1183)
Q Consensus 1009 --g~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~---~--PsILfIDEID~Ll~~r~~---~~~~e~l~~il~~LL~~ 1078 (1183)
...++++++..++++|++++.+.+..+|...... . --.++|||++.|...|.+ ..+..-.-++.+.++.+
T Consensus 209 y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQ 288 (423)
T KOG0744|consen 209 YYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQ 288 (423)
T ss_pred cccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHH
Confidence 3467899999999999999999999999876543 2 236678999999865522 12223334788999999
Q ss_pred hcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhc---cC---------------CCh
Q 001031 1079 WDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE---EL---------------ASD 1140 (1183)
Q Consensus 1079 Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~---~l---------------~~d 1140 (1183)
+|.+.. ..+|++++|+|-.+.||.+|.+|-+-+.++..|+...|.+|++..+... ++ ..+
T Consensus 289 lDrlK~--~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~ 366 (423)
T KOG0744|consen 289 LDRLKR--YPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQK 366 (423)
T ss_pred HHHhcc--CCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhH
Confidence 999864 4789999999999999999999999999999999999999999987641 00 011
Q ss_pred hhHHHHHHH-cCCCcHHHHHHHH
Q 001031 1141 VDLEGIANM-ADGYSGSDLKNLC 1162 (1183)
Q Consensus 1141 idl~~LA~~-TeGySg~DL~~L~ 1162 (1183)
.....+... +.|.||+-|+.|=
T Consensus 367 ~~~~~~~~~~~~gLSGRtlrkLP 389 (423)
T KOG0744|consen 367 ALRNILIELSTVGLSGRTLRKLP 389 (423)
T ss_pred hHHHHHHHHhhcCCccchHhhhh
Confidence 123334444 4799999988873
No 49
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1e-17 Score=188.84 Aligned_cols=207 Identities=26% Similarity=0.436 Sum_probs=161.9
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1025 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~ 1025 (1183)
..|++++-.......|+++....- + .+. -..|.++||+|||||||||++|+.||...|..+-.+.+.++.- .-
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTa-N----TK~-h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG 424 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATA-N----TKK-HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LG 424 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhc-c----ccc-ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cc
Confidence 347788877777777776543211 1 111 1346678999999999999999999999999998888777532 12
Q ss_pred cchHHHHHHHHHHHhccCCe-EEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcH
Q 001031 1026 GEGEKYVKAVFSLASKIAPS-VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1104 (1183)
Q Consensus 1026 GesE~~Ir~lF~~A~k~~Ps-ILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~ 1104 (1183)
...-..|.++|..+.++..+ +|||||.|.++..|......+..+..+|.|+..-.. ....++++.+||+|.+||.
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd----qSrdivLvlAtNrpgdlDs 500 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----QSRDIVLVLATNRPGDLDS 500 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc----cccceEEEeccCCccchhH
Confidence 23455799999999987765 788999999998887777788888899998865322 2367889999999999999
Q ss_pred HHHhccCcEEEecCCCHHHHHHHHHHHHhhccC---------------------------CChhhHHHHHHHcCCCcHHH
Q 001031 1105 AVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL---------------------------ASDVDLEGIANMADGYSGSD 1157 (1183)
Q Consensus 1105 aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l---------------------------~~didl~~LA~~TeGySg~D 1157 (1183)
++-+||+.+++|++|..++|.+++..|+.+.-+ ..+.-+.+.|..|+||||++
T Consensus 501 AV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGRE 580 (630)
T KOG0742|consen 501 AVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGRE 580 (630)
T ss_pred HHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHH
Confidence 999999999999999999999999999875221 11123678899999999999
Q ss_pred HHHHHH
Q 001031 1158 LKNLCV 1163 (1183)
Q Consensus 1158 L~~L~~ 1163 (1183)
|..|+.
T Consensus 581 iakLva 586 (630)
T KOG0742|consen 581 IAKLVA 586 (630)
T ss_pred HHHHHH
Confidence 999864
No 50
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.75 E-value=4.9e-17 Score=182.80 Aligned_cols=216 Identities=17% Similarity=0.240 Sum_probs=161.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEecCcc
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISMSSI 1020 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~k--P~~gVLL~GPPGTGKT~LAkAIA~eLg-------~pfi~I~~s~L 1020 (1183)
+++|++++|+++.+.+.+ +..++.+.+.++.. |..++||+||||||||++|+++|+.+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999998876 44445555444432 456899999999999999999988762 37999999899
Q ss_pred ccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCC-
Q 001031 1021 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP- 1099 (1183)
Q Consensus 1021 ~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p- 1099 (1183)
.+.++|..+..++.+|..|. ++||||||++.|.+.+.. ......+.+.|+..++.. ...++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~---~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENQ----RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc---cchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHH
Confidence 88889988888888888764 489999999988543221 122334555666666532 2567888887542
Q ss_pred ----CCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHc------CC-CcHHHHHHHHHHHHH
Q 001031 1100 ----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA------DG-YSGSDLKNLCVTAAH 1167 (1183)
Q Consensus 1100 ----~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~T------eG-ySg~DL~~L~~~Aa~ 1167 (1183)
..+++++.+||...+.|+.++.+++..|++.++.+.... .+..+..+..+. +. -.++++++++..|+.
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 235899999999999999999999999999999885432 333344444431 22 347999999999999
Q ss_pred HhHHHHHhh
Q 001031 1168 CPIREILEK 1176 (1183)
Q Consensus 1168 ~Aire~le~ 1176 (1183)
+...|+...
T Consensus 252 ~~~~r~~~~ 260 (284)
T TIGR02880 252 RQANRLFCD 260 (284)
T ss_pred HHHHHHhcC
Confidence 988888754
No 51
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.74 E-value=9.4e-16 Score=194.57 Aligned_cols=211 Identities=19% Similarity=0.212 Sum_probs=141.1
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc--
Q 001031 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-- 1023 (1183)
Q Consensus 949 dDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~-- 1023 (1183)
..|+|++.++..+.+.+..... .+ ..-.+|...+||+||+|+|||+||+++|+.+ +.+++.++++++...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~--gl---~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~ 583 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARV--GL---KNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHT 583 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhh--cc---cCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhcccccc
Confidence 4589999999999888753111 00 0113454568999999999999999999998 468999998775321
Q ss_pred ---cccchHHH-----HHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcc-------cCCC
Q 001031 1024 ---WFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-------KDKE 1088 (1183)
Q Consensus 1024 ---~~GesE~~-----Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~-------k~~~ 1088 (1183)
.+|....+ ...+....++.+.+||+|||||.+ . ..+.+.|+..++.... -+-.
T Consensus 584 ~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----~-------~~v~~~Llq~le~g~~~d~~g~~v~~~ 651 (821)
T CHL00095 584 VSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----H-------PDIFNLLLQILDDGRLTDSKGRTIDFK 651 (821)
T ss_pred HHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----C-------HHHHHHHHHHhccCceecCCCcEEecC
Confidence 12221111 123445555666699999999976 2 2344555555543211 1236
Q ss_pred CEEEEEecCCCC-------------------------------------CCcHHHHhccCcEEEecCCCHHHHHHHHHHH
Q 001031 1089 RVLVLAATNRPF-------------------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVI 1131 (1183)
Q Consensus 1089 ~VlVIaTTN~p~-------------------------------------~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~i 1131 (1183)
+.+||+|||... .+.|+|+.|++.++.|...+.++..+|++..
T Consensus 652 ~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~ 731 (821)
T CHL00095 652 NTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIM 731 (821)
T ss_pred ceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 789999988421 0235788899999999999999999999888
Q ss_pred Hhhc-------c--CC-ChhhHHHHHHHc--CCCcHHHHHHHHHHHHHHhHHHHHhh
Q 001031 1132 LAKE-------E--LA-SDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIREILEK 1176 (1183)
Q Consensus 1132 L~k~-------~--l~-~didl~~LA~~T--eGySg~DL~~L~~~Aa~~Aire~le~ 1176 (1183)
+.+. + +. ++...+.|+... ..|-.+.|+.+++.-...++.+.+-.
T Consensus 732 l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~l~ 788 (821)
T CHL00095 732 LKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVLS 788 (821)
T ss_pred HHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHh
Confidence 7642 1 11 334466677752 25667889999888888877766543
No 52
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.8e-18 Score=188.99 Aligned_cols=222 Identities=21% Similarity=0.304 Sum_probs=172.4
Q ss_pred HHHHHhhcccCCCccccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHH
Q 001031 435 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 514 (1183)
Q Consensus 435 ~k~~l~~~i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKAL 514 (1183)
++..|.-.|| -++-+|-|+.---. |..|.+|-+|+-..+|.+.+ || .=...++.|||.|||| ...-.||||.
T Consensus 115 Lr~~L~sAIv-~EKPNVkWsDVAGL--E~AKeALKEAVILPIKFPql--Ft-GkR~PwrgiLLyGPPG--TGKSYLAKAV 186 (439)
T KOG0739|consen 115 LRSALNSAIV-REKPNVKWSDVAGL--EGAKEALKEAVILPIKFPQL--FT-GKRKPWRGILLYGPPG--TGKSYLAKAV 186 (439)
T ss_pred HHHHhhhhhh-ccCCCCchhhhccc--hhHHHHHHhheeecccchhh--hc-CCCCcceeEEEeCCCC--CcHHHHHHHH
Confidence 4445555555 36678999988888 99999999999999988766 33 3345678999999999 6788999999
Q ss_pred HhhcCCeEEEEecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccc
Q 001031 515 AKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASS 594 (1183)
Q Consensus 515 A~~f~a~LLilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 594 (1183)
|.+-+.-+.-+-|++|-
T Consensus 187 ATEAnSTFFSvSSSDLv--------------------------------------------------------------- 203 (439)
T KOG0739|consen 187 ATEANSTFFSVSSSDLV--------------------------------------------------------------- 203 (439)
T ss_pred HhhcCCceEEeehHHHH---------------------------------------------------------------
Confidence 98776555544443332
Q ss_pred cccccccCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCccccccc
Q 001031 595 KNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASS 674 (1183)
Q Consensus 595 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~ 674 (1183)
T Consensus 204 -------------------------------------------------------------------------------- 203 (439)
T KOG0739|consen 204 -------------------------------------------------------------------------------- 203 (439)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCcchhHHHHHHHHHHHHhhccCCCCEEEEEcChhhhhcC-----ChhhHHHHHHHHh-cC------CCCEEEEE
Q 001031 675 LRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG-----NNDAYGALKSKLE-NL------PSNVVVIG 742 (1183)
Q Consensus 675 ~~~d~~~~~~~~k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~-----~~~~~~~i~~~L~-~L------~g~vivIg 742 (1183)
|.|-.+..-++..|||++.+ +.|.||||++||. +++ -.+.-..|+..|. ++ ...|+|+|
T Consensus 204 -----SKWmGESEkLVknLFemARe---~kPSIIFiDEiDs-lcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLg 274 (439)
T KOG0739|consen 204 -----SKWMGESEKLVKNLFEMARE---NKPSIIFIDEIDS-LCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLG 274 (439)
T ss_pred -----HHHhccHHHHHHHHHHHHHh---cCCcEEEeehhhh-hccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEe
Confidence 22433445568899999999 9999999999995 552 2444445555443 22 34899999
Q ss_pred eccCCCcccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHHHHHHH
Q 001031 743 SHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQ 822 (1183)
Q Consensus 743 s~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq 822 (1183)
||| .|..+|- |+||||++.
T Consensus 275 ATN------------------------------iPw~LDs-------------------------------AIRRRFekR 293 (439)
T KOG0739|consen 275 ATN------------------------------IPWVLDS-------------------------------AIRRRFEKR 293 (439)
T ss_pred cCC------------------------------CchhHHH-------------------------------HHHHHhhcc
Confidence 999 6666664 999999999
Q ss_pred HhhhhhhhhhccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhh
Q 001031 823 LERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALS 877 (1183)
Q Consensus 823 ~e~~Lpd~~gR~~Il~IHT~l~~~~l~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s 877 (1183)
+||+||+..+|..+++||--..-+.|...|+.+|+.+|.||+|+||.-+|+.|.-
T Consensus 294 IYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalm 348 (439)
T KOG0739|consen 294 IYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALM 348 (439)
T ss_pred eeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhh
Confidence 9999999999999999995455566899999999999999999999988887654
No 53
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.5e-17 Score=199.93 Aligned_cols=254 Identities=22% Similarity=0.260 Sum_probs=195.3
Q ss_pred HHHHHHHHHhhc----ccCCCccccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHH
Q 001031 431 RRQAFKDSLQEG----ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIY 506 (1183)
Q Consensus 431 r~~~~k~~l~~~----i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Y 506 (1183)
..+-|++.|.+- .+--..-.|+|+..--+ +..|..|.++.-.-+++++. |..-.-.....|||.|||| .-
T Consensus 215 ~~~~~~~~l~~~~~~~~~~~~~~~v~~~diggl--~~~k~~l~e~v~~~~~~~e~--~~~~~~~~~~giLl~GpPG--tG 288 (494)
T COG0464 215 TEDDFEEALKKVLPSRGVLFEDEDVTLDDIGGL--EEAKEELKEAIETPLKRPEL--FRKLGLRPPKGVLLYGPPG--TG 288 (494)
T ss_pred cHHHHHHHHHhcCcccccccCCCCcceehhhcH--HHHHHHHHHHHHhHhhChHH--HHhcCCCCCCeeEEECCCC--CC
Confidence 344566666654 34455666777776665 88999999999999999887 5442223334999999999 78
Q ss_pred HHHHHHHHHhhcCCeEEEEecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCC
Q 001031 507 QETLAKALAKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPK 586 (1183)
Q Consensus 507 qe~LaKALA~~f~a~LLilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~ 586 (1183)
+.+||||+|++.+++++-+|...+.+.+-.|+
T Consensus 289 KT~lAkava~~~~~~fi~v~~~~l~sk~vGes------------------------------------------------ 320 (494)
T COG0464 289 KTLLAKAVALESRSRFISVKGSELLSKWVGES------------------------------------------------ 320 (494)
T ss_pred HHHHHHHHHhhCCCeEEEeeCHHHhccccchH------------------------------------------------
Confidence 99999999999999999999765544333221
Q ss_pred CCcccccccccccccCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCC
Q 001031 587 PEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDH 666 (1183)
Q Consensus 587 ~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~ 666 (1183)
T Consensus 321 -------------------------------------------------------------------------------- 320 (494)
T COG0464 321 -------------------------------------------------------------------------------- 320 (494)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccccccccCCCcchhHHHHHHHHHHHHhhccCCCCEEEEEcChhhhhcCC--------hhhHHHHHHHHhcC--CC
Q 001031 667 GFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENL--PS 736 (1183)
Q Consensus 667 ~~~~~~~~~~~d~~~~~~~~k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~~--------~~~~~~i~~~L~~L--~g 736 (1183)
.-.+..+|+.+.. ..|.|||||++|.|+... .++...+-..++.+ ..
T Consensus 321 --------------------ek~ir~~F~~A~~---~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~ 377 (494)
T COG0464 321 --------------------EKNIRELFEKARK---LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAE 377 (494)
T ss_pred --------------------HHHHHHHHHHHHc---CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccC
Confidence 1226666666664 899999999999998732 14555555555444 34
Q ss_pred CEEEEEeccCCCcccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHH
Q 001031 737 NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALL 816 (1183)
Q Consensus 737 ~vivIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALl 816 (1183)
+|+|||||| +||.+|+ |++
T Consensus 378 ~v~vi~aTN------------------------------~p~~ld~-------------------------------a~l 396 (494)
T COG0464 378 GVLVIAATN------------------------------RPDDLDP-------------------------------ALL 396 (494)
T ss_pred ceEEEecCC------------------------------CccccCH-------------------------------hhc
Confidence 899999999 7788887 999
Q ss_pred H--HHHHHHhhhhhhhhhccchhHHHHHhhhCC-CCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcc
Q 001031 817 S--DWKQQLERDVETLKGQSNIISIRSVLSRNG-LDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKL 893 (1183)
Q Consensus 817 R--Rferq~e~~Lpd~~gR~~Il~IHT~l~~~~-l~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl 893 (1183)
| ||++.+++++||...|.+|+++|+...... ..++++..|+..|.||+|+||+.+|.+|...++....
T Consensus 397 R~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~--------- 467 (494)
T COG0464 397 RPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR--------- 467 (494)
T ss_pred ccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc---------
Confidence 9 999999999999999999999998744444 4789999999999999999999999999999987543
Q ss_pred eecccchhhhHHHHHhhhhhhhh
Q 001031 894 KISTESIMYGLNILQGIQSESKS 916 (1183)
Q Consensus 894 ~Id~~sIkv~~~dF~~al~eikp 916 (1183)
...+...+|..++..++|
T Consensus 468 -----~~~~~~~~~~~a~~~~~p 485 (494)
T COG0464 468 -----RREVTLDDFLDALKKIKP 485 (494)
T ss_pred -----cCCccHHHHHHHHHhcCC
Confidence 335677888887766544
No 54
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.1e-17 Score=193.52 Aligned_cols=221 Identities=23% Similarity=0.351 Sum_probs=173.1
Q ss_pred HhhcccCCCccccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhc
Q 001031 439 LQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 518 (1183)
Q Consensus 439 l~~~i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f 518 (1183)
|...|.+-+.++|+|+.-=-- |+.|.=|-+-+- +||.+. ||++==--.-+.|||.|||| ....+||||.|-+-
T Consensus 289 l~~ev~p~~~~nv~F~dVkG~--DEAK~ELeEiVe-fLkdP~--kftrLGGKLPKGVLLvGPPG--TGKTlLARAvAGEA 361 (752)
T KOG0734|consen 289 LDSEVDPEQMKNVTFEDVKGV--DEAKQELEEIVE-FLKDPT--KFTRLGGKLPKGVLLVGPPG--TGKTLLARAVAGEA 361 (752)
T ss_pred cccccChhhhcccccccccCh--HHHHHHHHHHHH-HhcCcH--HhhhccCcCCCceEEeCCCC--CchhHHHHHhhccc
Confidence 557788888999999987777 999999999876 677754 46554455668999999999 68999999999999
Q ss_pred CCeEEEEecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccc
Q 001031 519 SARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYT 598 (1183)
Q Consensus 519 ~a~LLilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 598 (1183)
++++.-- .| +|+.
T Consensus 362 ~VPFF~~-----sG-----SEFd--------------------------------------------------------- 374 (752)
T KOG0734|consen 362 GVPFFYA-----SG-----SEFD--------------------------------------------------------- 374 (752)
T ss_pred CCCeEec-----cc-----cchh---------------------------------------------------------
Confidence 8886421 11 1111
Q ss_pred cccCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCccccccccccc
Q 001031 599 FKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLD 678 (1183)
Q Consensus 599 ~~~gdrvk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d 678 (1183)
- -||| +...|
T Consensus 375 -----E-m~VG--------------------------------------------------------------vGArR-- 384 (752)
T KOG0734|consen 375 -----E-MFVG--------------------------------------------------------------VGARR-- 384 (752)
T ss_pred -----h-hhhc--------------------------------------------------------------ccHHH--
Confidence 0 0222 11222
Q ss_pred CCCcchhHHHHHHHHHHHHhhccCCCCEEEEEcChhhhhcC--ChhhHHHHHHHHhcC----C-----CCEEEEEeccCC
Q 001031 679 SSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--NNDAYGALKSKLENL----P-----SNVVVIGSHTQL 747 (1183)
Q Consensus 679 ~~~~~~~~k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~--~~~~~~~i~~~L~~L----~-----g~vivIgs~~~~ 747 (1183)
+..||..+.. +.|.|||||+||..=.+ +.+.| .-+.+|.+| . ..||||||||
T Consensus 385 -----------VRdLF~aAk~---~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~qNeGiIvigATN-- 447 (752)
T KOG0734|consen 385 -----------VRDLFAAAKA---RAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQNEGIIVIGATN-- 447 (752)
T ss_pred -----------HHHHHHHHHh---cCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCcCCceEEEeccC--
Confidence 7788888887 89999999999994331 23332 344445444 3 3899999999
Q ss_pred CcccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhh
Q 001031 748 DSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLER 825 (1183)
Q Consensus 748 d~~k~k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~ 825 (1183)
|||++|+ ||.| |||+|+-.
T Consensus 448 ----------------------------fpe~LD~-------------------------------AL~RPGRFD~~v~V 468 (752)
T KOG0734|consen 448 ----------------------------FPEALDK-------------------------------ALTRPGRFDRHVTV 468 (752)
T ss_pred ----------------------------ChhhhhH-------------------------------HhcCCCccceeEec
Confidence 8999998 9999 99999999
Q ss_pred hhhhhhhccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhh
Q 001031 826 DVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 881 (1183)
Q Consensus 826 ~Lpd~~gR~~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~ 881 (1183)
++||..||.+||+.| |....+ +++|+.-||.-|.||+||||+-+|+.|+.+|-+
T Consensus 469 p~PDv~GR~eIL~~y--l~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~ 523 (752)
T KOG0734|consen 469 PLPDVRGRTEILKLY--LSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAV 523 (752)
T ss_pred CCCCcccHHHHHHHH--HhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHh
Confidence 999999999999999 666666 699999999999999999999999999999865
No 55
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=7.3e-16 Score=189.43 Aligned_cols=202 Identities=21% Similarity=0.302 Sum_probs=145.5
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCccccc
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSK 1023 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l---~kP~~gVLL~GPPGTGKT~LAkAIA~eLg---~pfi~I~~s~L~s~ 1023 (1183)
.++|++++...+.+.+... +.++ .+|...+||.||+|+|||.||+++|..+. -.++.++|++++.+
T Consensus 492 rViGQd~AV~avs~aIrra--------RaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRA--------RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred ceeChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 5899999999999888742 2222 45655689999999999999999999995 88999999986533
Q ss_pred ------------cccchHHHHHHHHHHH-hccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccC----
Q 001031 1024 ------------WFGEGEKYVKAVFSLA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD---- 1086 (1183)
Q Consensus 1024 ------------~~GesE~~Ir~lF~~A-~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~---- 1086 (1183)
|+|..+ ...+.+| ++.+.+||++||||.- +..+++.|+..+|...-.+
T Consensus 564 HsVSrLIGaPPGYVGyee---GG~LTEaVRr~PySViLlDEIEKA------------HpdV~nilLQVlDdGrLTD~~Gr 628 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEE---GGQLTEAVRRKPYSVILLDEIEKA------------HPDVFNLLLQVLDDGRLTDGQGR 628 (786)
T ss_pred HHHHHHhCCCCCCceecc---ccchhHhhhcCCCeEEEechhhhc------------CHHHHHHHHHHhcCCeeecCCCC
Confidence 333332 2344455 4555699999999853 4567888888887544322
Q ss_pred ---CCCEEEEEecCCC----------------------------CCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhc
Q 001031 1087 ---KERVLVLAATNRP----------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE 1135 (1183)
Q Consensus 1087 ---~~~VlVIaTTN~p----------------------------~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~ 1135 (1183)
-.+.++|+|+|-- ..+.|+|+.|++.+|.|...+.+...+|+...+.+.
T Consensus 629 ~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l 708 (786)
T COG0542 629 TVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRL 708 (786)
T ss_pred EEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHH
Confidence 2568999999841 124568888999999999999999999999888652
Q ss_pred -------cCC---ChhhHHHHHHHcC--CCcHHHHHHHHHHHHHHhHHHHH
Q 001031 1136 -------ELA---SDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIREIL 1174 (1183)
Q Consensus 1136 -------~l~---~didl~~LA~~Te--GySg~DL~~L~~~Aa~~Aire~l 1174 (1183)
++. ++...+.|+...- .|-.+-|+.+++.-...++.+.+
T Consensus 709 ~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~i 759 (786)
T COG0542 709 AKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEI 759 (786)
T ss_pred HHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHH
Confidence 111 3333455665432 46678888888877777766654
No 56
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=7.2e-17 Score=191.60 Aligned_cols=215 Identities=23% Similarity=0.307 Sum_probs=164.7
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccccccc
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWF 1025 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----g~pfi~I~~s~L~s~~~ 1025 (1183)
|++-...++++..+....|. .++ .+|||+||+|+|||.|++++++++ -+++..++|+.+.+..+
T Consensus 409 d~i~~~s~kke~~n~~~spv-----------~~~-~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 409 DFIQVPSYKKENANQELSPV-----------FRH-GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred ceeecchhhhhhhhhhcccc-----------ccc-ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 55556666666655333321 222 479999999999999999999997 46677889999988888
Q ss_pred cchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCc-chHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcH
Q 001031 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP-GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1104 (1183)
Q Consensus 1026 GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~-~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~ 1104 (1183)
....+.+..+|..|.+++|+||+||++|.|++...+. +........+..+++.+-....+.+..+.|||+.+....|++
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~ 556 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNP 556 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcCh
Confidence 8888899999999999999999999999999733222 222222233344443332233345577899999999999999
Q ss_pred HHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHhh
Q 001031 1105 AVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEK 1176 (1183)
Q Consensus 1105 aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~le~ 1176 (1183)
.+.+ +|+.++.++.|+..+|.+|+++++++.... ...|++-++..|+||...||..++..|.+.|+.+.+..
T Consensus 557 ~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~ 631 (952)
T KOG0735|consen 557 LLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN 631 (952)
T ss_pred hhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc
Confidence 8887 799999999999999999999999886522 23345559999999999999999999999999555433
No 57
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.71 E-value=1.1e-15 Score=194.19 Aligned_cols=208 Identities=21% Similarity=0.306 Sum_probs=134.8
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001031 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1183)
Q Consensus 948 fdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l---~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~ 1021 (1183)
+..++|++.+++.+.+.+.... .++ .+|...+||+||+|||||++|++||..+ +.+++.++|+++.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~ 638 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFM 638 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhh
Confidence 3568999999999988886421 111 2333468999999999999999999987 5679999987754
Q ss_pred cc-----cccchHHHH----HHHHHHH-hccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCc-------c
Q 001031 1022 SK-----WFGEGEKYV----KAVFSLA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------T 1084 (1183)
Q Consensus 1022 s~-----~~GesE~~I----r~lF~~A-~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~-------~ 1084 (1183)
.. .+|....++ ...+..+ +..+.+|||||||+.+ ++ .+.+.|+..++... .
T Consensus 639 ~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-----~~-------~v~~~Ll~ile~g~l~d~~gr~ 706 (857)
T PRK10865 639 EKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----HP-------DVFNILLQVLDDGRLTDGQGRT 706 (857)
T ss_pred hhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-----CH-------HHHHHHHHHHhhCceecCCceE
Confidence 32 122111100 1223333 3444589999999976 21 22333333332111 0
Q ss_pred cCCCCEEEEEecCCC-------------------------CCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhc----
Q 001031 1085 KDKERVLVLAATNRP-------------------------FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE---- 1135 (1183)
Q Consensus 1085 k~~~~VlVIaTTN~p-------------------------~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~---- 1135 (1183)
.+-.+.+||+|||.. ..+.++|+.|++.++.+.+++.++..+|++.++...
T Consensus 707 vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl 786 (857)
T PRK10865 707 VDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRL 786 (857)
T ss_pred EeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 112456789999862 135578999999999999999999999998887652
Q ss_pred ---cC---CChhhHHHHHHHc--CCCcHHHHHHHHHHHHHHhHHHHHh
Q 001031 1136 ---EL---ASDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIREILE 1175 (1183)
Q Consensus 1136 ---~l---~~didl~~LA~~T--eGySg~DL~~L~~~Aa~~Aire~le 1175 (1183)
++ .++..++.|+... .-|-.+.|+.+++.-...++.+.+-
T Consensus 787 ~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~iL 834 (857)
T PRK10865 787 EERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQIL 834 (857)
T ss_pred HhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHHH
Confidence 12 1333455565432 1234679999999888887776643
No 58
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.71 E-value=2.2e-15 Score=191.03 Aligned_cols=203 Identities=21% Similarity=0.248 Sum_probs=137.3
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001031 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1183)
Q Consensus 949 dDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l---~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s 1022 (1183)
..++|++.+...+.+.+.... .++ .+|...+||+||+|+|||+||+++|..+ ...++.++++++..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~--------~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~ 637 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTAR--------AGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE 637 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHh--------cCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh
Confidence 358999999999988886421 122 2343348999999999999999999998 45789999877532
Q ss_pred c------------cccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCccc-----
Q 001031 1023 K------------WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK----- 1085 (1183)
Q Consensus 1023 ~------------~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k----- 1085 (1183)
. |+|..+. ..+....++.+.+||+|||||.. . ..+.+.|+..++.....
T Consensus 638 ~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka-----~-------~~v~~~Llq~ld~g~l~d~~Gr 703 (852)
T TIGR03345 638 AHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA-----H-------PDVLELFYQVFDKGVMEDGEGR 703 (852)
T ss_pred hhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc-----C-------HHHHHHHHHHhhcceeecCCCc
Confidence 1 2332211 12334445677799999999865 2 22333444444322111
Q ss_pred --CCCCEEEEEecCCCC-----------------------------CCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhh
Q 001031 1086 --DKERVLVLAATNRPF-----------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1134 (1183)
Q Consensus 1086 --~~~~VlVIaTTN~p~-----------------------------~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k 1134 (1183)
+-.+.+||+|||... .+.++|++|++ +|.|...+.++..+|+...+..
T Consensus 704 ~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 704 EIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred EEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHH
Confidence 125688999988411 25578888995 8899999999999999887754
Q ss_pred c--------cC---CChhhHHHHHHHcCC--CcHHHHHHHHHHHHHHhHHHHH
Q 001031 1135 E--------EL---ASDVDLEGIANMADG--YSGSDLKNLCVTAAHCPIREIL 1174 (1183)
Q Consensus 1135 ~--------~l---~~didl~~LA~~TeG--ySg~DL~~L~~~Aa~~Aire~l 1174 (1183)
. ++ .++..++.|+....+ |-.+.|+.+++.-...++.+.+
T Consensus 783 l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~ 835 (852)
T TIGR03345 783 IARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQI 835 (852)
T ss_pred HHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 1 22 134446777777643 5678999999988888877764
No 59
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.70 E-value=6.2e-15 Score=187.75 Aligned_cols=208 Identities=21% Similarity=0.303 Sum_probs=140.0
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001031 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1183)
Q Consensus 949 dDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l---~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s 1022 (1183)
..++|++.+++.+.+.+.... .++ .+|...+||+||+|||||++|++||..+ +.+++.++++.+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~ 636 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME 636 (852)
T ss_pred cccCCChHHHHHHHHHHHHHh--------ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence 458999999999988876421 111 2455669999999999999999999987 57899999887533
Q ss_pred c-----cccchHHH-----HHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCc-------cc
Q 001031 1023 K-----WFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TK 1085 (1183)
Q Consensus 1023 ~-----~~GesE~~-----Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~-------~k 1085 (1183)
. .+|....+ ...+....++.+.+||||||||.+ . ..+.+.|+..++.-. ..
T Consensus 637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----~-------~~v~~~Ll~~l~~g~l~d~~g~~v 704 (852)
T TIGR03346 637 KHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----H-------PDVFNVLLQVLDDGRLTDGQGRTV 704 (852)
T ss_pred cchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----C-------HHHHHHHHHHHhcCceecCCCeEE
Confidence 2 11211110 112333345556689999999976 2 223344444443211 01
Q ss_pred CCCCEEEEEecCCCC-------------------------CCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhh------
Q 001031 1086 DKERVLVLAATNRPF-------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK------ 1134 (1183)
Q Consensus 1086 ~~~~VlVIaTTN~p~-------------------------~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k------ 1134 (1183)
+-.+.+||+|||... .+.+.|+.|++.++.+.+++.++..+|+...+..
T Consensus 705 d~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~ 784 (852)
T TIGR03346 705 DFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLA 784 (852)
T ss_pred ecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 125678999998621 1446788899999999999999999999887753
Q ss_pred -cc--C-CChhhHHHHHHHc--CCCcHHHHHHHHHHHHHHhHHHHHhh
Q 001031 1135 -EE--L-ASDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIREILEK 1176 (1183)
Q Consensus 1135 -~~--l-~~didl~~LA~~T--eGySg~DL~~L~~~Aa~~Aire~le~ 1176 (1183)
.+ + .++..++.|+... ..+..+.|+++++.....++.+.+-.
T Consensus 785 ~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~l~ 832 (852)
T TIGR03346 785 ERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKILA 832 (852)
T ss_pred HCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 11 1 2444466777652 25667999999999999888776543
No 60
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.69 E-value=8.9e-17 Score=192.16 Aligned_cols=249 Identities=19% Similarity=0.225 Sum_probs=178.7
Q ss_pred HHHHHHHHHHhhcccCCCccccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHH
Q 001031 430 ARRQAFKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQET 509 (1183)
Q Consensus 430 ~r~~~~k~~l~~~i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~ 509 (1183)
.++|.++.. ++++-...+++|++.--+ ++.|.-|....-.+.. ....|+ + +..+.|||.|||| ....+
T Consensus 207 ~k~q~~~~~---~~le~~~~~~~~~dvgGl--~~lK~~l~~~~~~~~~--~~~~~g--l-~~pkGILL~GPpG--TGKTl 274 (489)
T CHL00195 207 EKKQIISQT---EILEFYSVNEKISDIGGL--DNLKDWLKKRSTSFSK--QASNYG--L-PTPRGLLLVGIQG--TGKSL 274 (489)
T ss_pred HHHHHHhhh---ccccccCCCCCHHHhcCH--HHHHHHHHHHHHHhhH--HHHhcC--C-CCCceEEEECCCC--CcHHH
Confidence 344444432 456666678889988886 8888888764322211 112343 3 3457899999999 68999
Q ss_pred HHHHHHhhcCCeEEEEecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCc
Q 001031 510 LAKALAKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEI 589 (1183)
Q Consensus 510 LaKALA~~f~a~LLilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~ 589 (1183)
||||+|++++++|+.+|...+++++-.++
T Consensus 275 lAkaiA~e~~~~~~~l~~~~l~~~~vGes--------------------------------------------------- 303 (489)
T CHL00195 275 TAKAIANDWQLPLLRLDVGKLFGGIVGES--------------------------------------------------- 303 (489)
T ss_pred HHHHHHHHhCCCEEEEEhHHhcccccChH---------------------------------------------------
Confidence 99999999999999999754444221110
Q ss_pred ccccccccccccCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcc
Q 001031 590 STASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFF 669 (1183)
Q Consensus 590 ~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~ 669 (1183)
T Consensus 304 -------------------------------------------------------------------------------- 303 (489)
T CHL00195 304 -------------------------------------------------------------------------------- 303 (489)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCCcchhHHHHHHHHHHHHhhccCCCCEEEEEcChhhhhcCC---------hhhHHHHHHHHhcCCCCEEE
Q 001031 670 CTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN---------NDAYGALKSKLENLPSNVVV 740 (1183)
Q Consensus 670 ~~~~~~~~d~~~~~~~~k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~~---------~~~~~~i~~~L~~L~g~viv 740 (1183)
...+..+|+.+.. .+|.||||||||+++.+. .++...+-..|..-..+|+|
T Consensus 304 -----------------e~~l~~~f~~A~~---~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 304 -----------------ESRMRQMIRIAEA---LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred -----------------HHHHHHHHHHHHh---cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 1125666776655 789999999999987631 22333333344444668999
Q ss_pred EEeccCCCcccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--H
Q 001031 741 IGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--D 818 (1183)
Q Consensus 741 Igs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--R 818 (1183)
||+|| .|+.+|+ |++| |
T Consensus 364 IaTTN------------------------------~~~~Ld~-------------------------------allR~GR 382 (489)
T CHL00195 364 VATAN------------------------------NIDLLPL-------------------------------EILRKGR 382 (489)
T ss_pred EEecC------------------------------ChhhCCH-------------------------------HHhCCCc
Confidence 99999 5566666 8888 9
Q ss_pred HHHHHhhhhhhhhhccchhHHHHHhhhC-CCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecc
Q 001031 819 WKQQLERDVETLKGQSNIISIRSVLSRN-GLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKIST 897 (1183)
Q Consensus 819 ferq~e~~Lpd~~gR~~Il~IHT~l~~~-~l~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~ 897 (1183)
|++.+++++|+...|.+|+++|.....+ ...+.+++.||..|.||+|+||+.+|.+|...|+....
T Consensus 383 FD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~------------- 449 (489)
T CHL00195 383 FDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR------------- 449 (489)
T ss_pred CCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC-------------
Confidence 9999999999999999999999663322 34688999999999999999999999999988874211
Q ss_pred cchhhhHHHHHhhhhhhhhhh
Q 001031 898 ESIMYGLNILQGIQSESKSLK 918 (1183)
Q Consensus 898 ~sIkv~~~dF~~al~eikp~~ 918 (1183)
.+...||..+...++|+.
T Consensus 450 ---~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 450 ---EFTTDDILLALKQFIPLA 467 (489)
T ss_pred ---CcCHHHHHHHHHhcCCCc
Confidence 245678887777776653
No 61
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=4.7e-16 Score=179.63 Aligned_cols=219 Identities=16% Similarity=0.297 Sum_probs=168.9
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1025 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~ 1025 (1183)
.+|+.++-..+.|+.|.+-+..++...+.|.+.+.... +|.|||||||||||+++.|+|+++++.++.+..++....
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawK-RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n-- 274 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWK-RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD-- 274 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchh-ccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc--
Confidence 78999999999999999999998999999988764433 789999999999999999999999999999988775432
Q ss_pred cchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcch-----HH-HHHHHHHHHHHhhcCCcccCCCCEEEEEecCCC
Q 001031 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-----HE-AMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1183)
Q Consensus 1026 GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~-----~e-~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p 1099 (1183)
. .++.++..+. ..+||+|++||+-+.-+..... +. ...-.+..|++.+||++.....--+||+|||.+
T Consensus 275 --~--dLr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 275 --S--DLRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred --H--HHHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 1 2666655443 3589999999987643321111 11 122456779999999998876678899999999
Q ss_pred CCCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCC--CcHHHHHHHHHH---HHHHhHHH
Q 001031 1100 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADG--YSGSDLKNLCVT---AAHCPIRE 1172 (1183)
Q Consensus 1100 ~~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeG--ySg~DL~~L~~~---Aa~~Aire 1172 (1183)
+.|||||+| |++.+|++..-+.++-..++..|+.... +..-+.+|.+..++ .|++|+....-. .+-.++++
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~ 426 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKG 426 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHH
Confidence 999999999 9999999999999999999999987633 22334555554444 699999765432 35566666
Q ss_pred HHh
Q 001031 1173 ILE 1175 (1183)
Q Consensus 1173 ~le 1175 (1183)
+++
T Consensus 427 Lv~ 429 (457)
T KOG0743|consen 427 LVE 429 (457)
T ss_pred HHH
Confidence 654
No 62
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.66 E-value=5.6e-16 Score=166.94 Aligned_cols=195 Identities=23% Similarity=0.298 Sum_probs=121.1
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1025 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~ 1025 (1183)
.+|+|++|+++++..+.-++.....+ ..+..++|||||||+|||+||+.||++++.+|..++++.+..
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r---------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k--- 88 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKR---------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK--- 88 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCT---------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S---
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhc---------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh---
Confidence 58999999999999987766532221 234468999999999999999999999999999888755321
Q ss_pred cchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHH-hhcCCccc------CCCCEEEEEecCC
Q 001031 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV-NWDGLRTK------DKERVLVLAATNR 1098 (1183)
Q Consensus 1026 GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~-~Ldgl~~k------~~~~VlVIaTTN~ 1098 (1183)
...+..++.... ...||||||||+| +...++.+-..++.+.. .+-|.... +-.++.+|++|.+
T Consensus 89 ---~~dl~~il~~l~--~~~ILFIDEIHRl-----nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr 158 (233)
T PF05496_consen 89 ---AGDLAAILTNLK--EGDILFIDEIHRL-----NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTR 158 (233)
T ss_dssp ---CHHHHHHHHT----TT-EEEECTCCC-------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESS
T ss_pred ---HHHHHHHHHhcC--CCcEEEEechhhc-----cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecc
Confidence 123344444332 4579999999988 33333333333332211 11111110 1256889999999
Q ss_pred CCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHH
Q 001031 1099 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCV 1163 (1183)
Q Consensus 1099 p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~ 1163 (1183)
...|...+++||..+..+...+.++..+|++.-....++. .+....+||.++.| +++--.+|++
T Consensus 159 ~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~ 223 (233)
T PF05496_consen 159 AGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLR 223 (233)
T ss_dssp GCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHH
T ss_pred ccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 9999999999999888999999999999998766655544 45557889999987 4544444443
No 63
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.1e-15 Score=183.35 Aligned_cols=188 Identities=25% Similarity=0.390 Sum_probs=159.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcch
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~ 1064 (1183)
..+||+|+||||||++++++|.++|.+++.++|.++.....+..|..+..+|..|++.+|+||||-++|.+...... +.
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-ge 510 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-GE 510 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC-ch
Confidence 46999999999999999999999999999999999999999999999999999999999999999999998744433 22
Q ss_pred HHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHH
Q 001031 1065 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLE 1144 (1183)
Q Consensus 1065 ~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~ 1144 (1183)
.......++.++. .+-. .....+++||++|+..+.+++.+++.|.+.|.++.|+.++|.+||++++....+..++.++
T Consensus 511 d~rl~~~i~~~ls-~e~~-~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k 588 (953)
T KOG0736|consen 511 DARLLKVIRHLLS-NEDF-KFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLK 588 (953)
T ss_pred hHHHHHHHHHHHh-cccc-cCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHH
Confidence 2222233343333 2222 2234789999999999999999999998999999999999999999999999999999999
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHhHHHHHh
Q 001031 1145 GIANMADGYSGSDLKNLCVTAAHCPIREILE 1175 (1183)
Q Consensus 1145 ~LA~~TeGySg~DL~~L~~~Aa~~Aire~le 1175 (1183)
.++.+|.||+.+++..++..+-..+..++.+
T Consensus 589 ~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~ 619 (953)
T KOG0736|consen 589 QLARKTSGFSFGDLEALVAHSSLAAKTRIKN 619 (953)
T ss_pred HHHHhcCCCCHHHHHHHhcCchHHHHHHHHh
Confidence 9999999999999999998885555555443
No 64
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.64 E-value=4e-16 Score=201.22 Aligned_cols=134 Identities=18% Similarity=0.177 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEEcChhhhhcCCh--hhHHHHHHHHhcC-----CCCEEEEEeccCCCcccccCCCCCc
Q 001031 687 KLAINELFEVALNESKSSPLIVFVKDIEKSLTGNN--DAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHPGGL 759 (1183)
Q Consensus 687 k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~~~--~~~~~i~~~L~~L-----~g~vivIgs~~~~d~~k~k~~~~~~ 759 (1183)
..-+..+|+.+.. ..|.||||||||.+..+.. ...+.+...|+.. ..+||||||||
T Consensus 1718 ~~rIr~lFelARk---~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATN-------------- 1780 (2281)
T CHL00206 1718 RFYITLQFELAKA---MSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTH-------------- 1780 (2281)
T ss_pred HHHHHHHHHHHHH---CCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCC--------------
Confidence 3348899999988 8999999999999655422 2356666667654 23799999999
Q ss_pred eeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhhccchh
Q 001031 760 LFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNII 837 (1183)
Q Consensus 760 ~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il 837 (1183)
+||.+|| ||+| ||++++++++|+..+|..|+
T Consensus 1781 ----------------RPD~LDP-------------------------------ALLRPGRFDR~I~Ir~Pd~p~R~kiL 1813 (2281)
T CHL00206 1781 ----------------IPQKVDP-------------------------------ALIAPNKLNTCIKIRRLLIPQQRKHF 1813 (2281)
T ss_pred ----------------CcccCCH-------------------------------hHcCCCCCCeEEEeCCCCchhHHHHH
Confidence 8888998 9999 99999999999999999999
Q ss_pred HHHHHhhhCCC--CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhcc
Q 001031 838 SIRSVLSRNGL--DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCS 884 (1183)
Q Consensus 838 ~IHT~l~~~~l--~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~ 884 (1183)
.|+...+.-.+ .+++++.||..|.||+||||+.||++|++.|+.+..
T Consensus 1814 ~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~k 1862 (2281)
T CHL00206 1814 FTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKK 1862 (2281)
T ss_pred HHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 98643333333 346899999999999999999999999999998643
No 65
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.64 E-value=3.4e-15 Score=170.23 Aligned_cols=180 Identities=26% Similarity=0.461 Sum_probs=132.0
Q ss_pred CCcccccCcHHHH---HHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001031 946 VTFDDIGALENVK---DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1183)
Q Consensus 946 ~tfdDI~Gle~vk---~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s 1022 (1183)
.++++++|++... ..|++.+.. + ...+++||||||||||+||+.||...+.+|..++...
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~----------~----~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEA----------G----HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhc----------C----CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 5788999998876 345555541 2 2368999999999999999999999999999998543
Q ss_pred ccccchHHHHHHHHHHHhccC----CeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEec--
Q 001031 1023 KWFGEGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-- 1096 (1183)
Q Consensus 1023 ~~~GesE~~Ir~lF~~A~k~~----PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTT-- 1096 (1183)
...+.++.+|+.|++.. ..|||||||+++ +...| ..|+-.+ +++.|++|++|
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----nK~QQ-------D~lLp~v------E~G~iilIGATTE 141 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----NKAQQ-------DALLPHV------ENGTIILIGATTE 141 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----Chhhh-------hhhhhhh------cCCeEEEEeccCC
Confidence 23467899999885543 489999999988 22222 2233332 44778888877
Q ss_pred CCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhh--ccCC------ChhhHHHHHHHcCCCcHHHHHHHHHHHH
Q 001031 1097 NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK--EELA------SDVDLEGIANMADGYSGSDLKNLCVTAA 1166 (1183)
Q Consensus 1097 N~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k--~~l~------~didl~~LA~~TeGySg~DL~~L~~~Aa 1166 (1183)
|+.+.|.+++++|. .++.+...+.++..++++..+.. ..+. ++..++.|+..++|-..+.| +++..|+
T Consensus 142 NPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL-N~LE~~~ 217 (436)
T COG2256 142 NPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRAL-NLLELAA 217 (436)
T ss_pred CCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHH-HHHHHHH
Confidence 78899999999999 88999999999999999884433 2222 35567888898888655444 3334443
No 66
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.63 E-value=1.1e-15 Score=179.13 Aligned_cols=232 Identities=20% Similarity=0.286 Sum_probs=172.0
Q ss_pred CccccccccccccchhhHHHHHHhhhhhhccccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 001031 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1183)
Q Consensus 447 ~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLil 525 (1183)
+.-+|+|++.--+ |..|.-|..+.-..|++++.- ++ .+. ..+.|||.||+| ....+||||+|++.++.++-+
T Consensus 138 ~~p~v~~~digGl--~~~k~~l~~~v~~pl~~~~~~~~~--Gl~-~pkgvLL~GppG--TGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 138 EKPDVTYSDIGGL--DIQKQEIREAVELPLTCPELYEQI--GID-PPRGVLLYGPPG--TGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred CCCCCCHHHcCCH--HHHHHHHHHHHHHHhcCHHHHHhc--CCC-CCceEEEECCCC--CCHHHHHHHHHHhcCCCEEEE
Confidence 4678999999888 999999999998899998752 33 233 457899999999 799999999999988776655
Q ss_pred ecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCce
Q 001031 526 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 605 (1183)
Q Consensus 526 Ds~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 605 (1183)
..+.+..
T Consensus 211 ~~s~l~~------------------------------------------------------------------------- 217 (398)
T PTZ00454 211 VGSEFVQ------------------------------------------------------------------------- 217 (398)
T ss_pred ehHHHHH-------------------------------------------------------------------------
Confidence 3211000
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchh
Q 001031 606 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 685 (1183)
Q Consensus 606 k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~ 685 (1183)
+|+|.
T Consensus 218 k~~ge--------------------------------------------------------------------------- 222 (398)
T PTZ00454 218 KYLGE--------------------------------------------------------------------------- 222 (398)
T ss_pred Hhcch---------------------------------------------------------------------------
Confidence 11110
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEEcChhhhhcCC--------hhhHHHHHHHH---hcC--CCCEEEEEeccCCCcccc
Q 001031 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKL---ENL--PSNVVVIGSHTQLDSRKE 752 (1183)
Q Consensus 686 ~k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~~--------~~~~~~i~~~L---~~L--~g~vivIgs~~~~d~~k~ 752 (1183)
....+..+|+.+.. .+|.||||+|+|.++.++ .+....+...| +.+ ..+|+||++||
T Consensus 223 ~~~~lr~lf~~A~~---~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN------- 292 (398)
T PTZ00454 223 GPRMVRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATN------- 292 (398)
T ss_pred hHHHHHHHHHHHHh---cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecC-------
Confidence 11235667777765 799999999999976421 12222233333 333 24899999999
Q ss_pred cCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhh
Q 001031 753 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 830 (1183)
Q Consensus 753 k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~ 830 (1183)
.||.+|+ |++| ||++++++++|+.
T Consensus 293 -----------------------~~d~LDp-------------------------------AllR~GRfd~~I~~~~P~~ 318 (398)
T PTZ00454 293 -----------------------RADTLDP-------------------------------ALLRPGRLDRKIEFPLPDR 318 (398)
T ss_pred -----------------------CchhCCH-------------------------------HHcCCCcccEEEEeCCcCH
Confidence 5677776 8888 9999999999999
Q ss_pred hhccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhHHHHHh
Q 001031 831 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 909 (1183)
Q Consensus 831 ~gR~~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~dF~~ 909 (1183)
..|..|+++|+. ..++ .+++++.|+..|.||+|+||+.+|.+|...|+.+.. ..+...||..
T Consensus 319 ~~R~~Il~~~~~--~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~---------------~~i~~~df~~ 381 (398)
T PTZ00454 319 RQKRLIFQTITS--KMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNR---------------YVILPKDFEK 381 (398)
T ss_pred HHHHHHHHHHHh--cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC---------------CccCHHHHHH
Confidence 999999999975 3344 678999999999999999999999999999986431 1345677877
Q ss_pred hhhhh
Q 001031 910 IQSES 914 (1183)
Q Consensus 910 al~ei 914 (1183)
+...+
T Consensus 382 A~~~v 386 (398)
T PTZ00454 382 GYKTV 386 (398)
T ss_pred HHHHH
Confidence 75554
No 67
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.62 E-value=1.3e-15 Score=178.42 Aligned_cols=234 Identities=22% Similarity=0.266 Sum_probs=172.0
Q ss_pred CccccccccccccchhhHHHHHHhhhhhhccccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 001031 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1183)
Q Consensus 447 ~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLil 525 (1183)
+..+++|+++..+ |..+.-|.++....+++++.- +++ +. ..+.|||.|||| ....+||||+|++++++++.+
T Consensus 124 ~~p~~~~~di~Gl--~~~~~~l~~~i~~pl~~~~~~~~~g--~~-~p~gvLL~GppG--tGKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 124 ESPNVTYEDIGGL--EEQIREVREAVELPLKKPELFEEVG--IE-PPKGVLLYGPPG--TGKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred CCCCCCHHHhCCc--HHHHHHHHHHHHHHhhCHHHHHhcC--CC-CCCceEEECCCC--CChHHHHHHHHHHhCCCEEEe
Confidence 4567899999888 888999999988888887652 332 22 235799999999 689999999999998887766
Q ss_pred ecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCce
Q 001031 526 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 605 (1183)
Q Consensus 526 Ds~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 605 (1183)
+.+.+..
T Consensus 197 ~~~~l~~------------------------------------------------------------------------- 203 (389)
T PRK03992 197 VGSELVQ------------------------------------------------------------------------- 203 (389)
T ss_pred ehHHHhH-------------------------------------------------------------------------
Confidence 4322111
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchh
Q 001031 606 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 685 (1183)
Q Consensus 606 k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~ 685 (1183)
+|+|.
T Consensus 204 ~~~g~--------------------------------------------------------------------------- 208 (389)
T PRK03992 204 KFIGE--------------------------------------------------------------------------- 208 (389)
T ss_pred hhccc---------------------------------------------------------------------------
Confidence 01110
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEEcChhhhhcC--------ChhhHHHHHHHHhcCC-----CCEEEEEeccCCCcccc
Q 001031 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENLP-----SNVVVIGSHTQLDSRKE 752 (1183)
Q Consensus 686 ~k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~--------~~~~~~~i~~~L~~L~-----g~vivIgs~~~~d~~k~ 752 (1183)
....+..+|+.+.. ..|.||||+|+|.++.. ..+.-..+...|..+. ++|+|||+||
T Consensus 209 ~~~~i~~~f~~a~~---~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn------- 278 (389)
T PRK03992 209 GARLVRELFELARE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATN------- 278 (389)
T ss_pred hHHHHHHHHHHHHh---cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecC-------
Confidence 11135667777765 78999999999997642 1233233333333332 4899999999
Q ss_pred cCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhh
Q 001031 753 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 830 (1183)
Q Consensus 753 k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~ 830 (1183)
.||.+|+ |++| ||++.+++++|+.
T Consensus 279 -----------------------~~~~ld~-------------------------------allRpgRfd~~I~v~~P~~ 304 (389)
T PRK03992 279 -----------------------RIDILDP-------------------------------AILRPGRFDRIIEVPLPDE 304 (389)
T ss_pred -----------------------ChhhCCH-------------------------------HHcCCccCceEEEECCCCH
Confidence 4455555 8888 9999999999999
Q ss_pred hhccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhHHHHHh
Q 001031 831 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 909 (1183)
Q Consensus 831 ~gR~~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~dF~~ 909 (1183)
..|.+|+++|.. ...+ .+.++..||..|.||+|+||+.+|++|...|+.+.. -.+...||+.
T Consensus 305 ~~R~~Il~~~~~--~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~---------------~~i~~~d~~~ 367 (389)
T PRK03992 305 EGRLEILKIHTR--KMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDR---------------TEVTMEDFLK 367 (389)
T ss_pred HHHHHHHHHHhc--cCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC---------------CCcCHHHHHH
Confidence 999999999954 3344 458899999999999999999999999999987421 1356788888
Q ss_pred hhhhhhh
Q 001031 910 IQSESKS 916 (1183)
Q Consensus 910 al~eikp 916 (1183)
+...+.+
T Consensus 368 A~~~~~~ 374 (389)
T PRK03992 368 AIEKVMG 374 (389)
T ss_pred HHHHHhc
Confidence 8776654
No 68
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.60 E-value=1.2e-14 Score=182.46 Aligned_cols=185 Identities=25% Similarity=0.380 Sum_probs=140.7
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~pfi~I 1015 (1183)
..+++++|.++....+.+.+.. +...++||+||||||||++|+++|+.+ +..++.+
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~--------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR--------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 3567899999988887765531 123579999999999999999999987 6778999
Q ss_pred ecCccc--cccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcch-HHHHHHHHHHHHHhhcCCcccCCCCEEE
Q 001031 1016 SMSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1183)
Q Consensus 1016 ~~s~L~--s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~-~e~l~~il~~LL~~Ldgl~~k~~~~VlV 1092 (1183)
++..+. ..+.|+.+..++.+|..+.+..+.||||||||.|++.....+. .... +.|...+ ....+.+
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~----~~L~~~l------~~g~i~~ 314 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDAS----NLLKPAL------SSGKLRC 314 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHH----HHHHHHH------hCCCeEE
Confidence 988876 4678999999999999998888999999999999865432221 1221 2222222 2367899
Q ss_pred EEecCCC-----CCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhc----cC-CChhhHHHHHHHcCCCcH
Q 001031 1093 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE----EL-ASDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1093 IaTTN~p-----~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~----~l-~~didl~~LA~~TeGySg 1155 (1183)
|++|+.. ..+|+++.|||. .+.++.|+.+++.+|++.+.... .+ ..+..+..++..+..|-+
T Consensus 315 IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~ 386 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIN 386 (731)
T ss_pred EEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccc
Confidence 9999863 468999999995 79999999999999999876542 22 255667778877776643
No 69
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.60 E-value=1.3e-14 Score=183.17 Aligned_cols=214 Identities=19% Similarity=0.269 Sum_probs=146.2
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc--------
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-------- 1021 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~-------- 1021 (1183)
++.|++++++.+.+++.....+ .. . ....+||+||||||||++|++||+.++.+|+.+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~------~~-~-~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR------GK-M-KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh------cC-C-CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 5889999999999987643221 11 1 223799999999999999999999999999999865432
Q ss_pred -cccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHH-----HHHhhcCCcccCCCCEEEEEe
Q 001031 1022 -SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE-----FMVNWDGLRTKDKERVLVLAA 1095 (1183)
Q Consensus 1022 -s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~-----LL~~Ldgl~~k~~~~VlVIaT 1095 (1183)
..|.|.....+.+.|..+....| ||||||||.+...... ....++..++.. |+....+.. -+..++++|+|
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~-~~~~aLl~~ld~~~~~~f~d~~~~~~-~d~s~v~~I~T 469 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG-DPASALLEVLDPEQNNAFSDHYLDVP-FDLSKVIFIAT 469 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC-CHHHHHHHhcCHHhcCccccccCCce-eccCCEEEEEe
Confidence 24566666777888888876665 8999999999643221 111222122111 111110111 11257899999
Q ss_pred cCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhh-----ccC------CChhhHHHHHH-HcCCCcHHHHHHHHH
Q 001031 1096 TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-----EEL------ASDVDLEGIAN-MADGYSGSDLKNLCV 1163 (1183)
Q Consensus 1096 TN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k-----~~l------~~didl~~LA~-~TeGySg~DL~~L~~ 1163 (1183)
||..+.+++++++|| .++.++.|+.+++.+|++.++.. ..+ ..+..+..|++ .+..+..++|+..+.
T Consensus 470 tN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~ 548 (775)
T TIGR00763 470 ANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIE 548 (775)
T ss_pred cCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHH
Confidence 999999999999999 68999999999999999887621 122 13344555655 333455577777777
Q ss_pred HHHHHhHHHHHh
Q 001031 1164 TAAHCPIREILE 1175 (1183)
Q Consensus 1164 ~Aa~~Aire~le 1175 (1183)
..+..+.++++.
T Consensus 549 ~~~~~~~~~~~~ 560 (775)
T TIGR00763 549 KICRKAAVKLVE 560 (775)
T ss_pred HHHHHHHHHHHh
Confidence 777666666654
No 70
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.60 E-value=3.1e-14 Score=160.56 Aligned_cols=200 Identities=21% Similarity=0.255 Sum_probs=137.9
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccccc
Q 001031 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFG 1026 (1183)
Q Consensus 947 tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~G 1026 (1183)
+|++++|++++++.|..++.....+ ..++.++||+||||+|||+||+++|++++.++..+..+.+.. .+
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~---------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~--~~ 70 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR---------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK--PG 70 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC--ch
Confidence 6899999999999998877532211 223467999999999999999999999998877665443221 11
Q ss_pred chHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhh--cCC-cc----cCCCCEEEEEecCCC
Q 001031 1027 EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGL-RT----KDKERVLVLAATNRP 1099 (1183)
Q Consensus 1027 esE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~L--dgl-~~----k~~~~VlVIaTTN~p 1099 (1183)
.+...+... ..+.||||||||.+. +...+.+..+++.....+ +.. .. ....++.+|++|+.+
T Consensus 71 ----~l~~~l~~~--~~~~vl~iDEi~~l~-----~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~ 139 (305)
T TIGR00635 71 ----DLAAILTNL--EEGDVLFIDEIHRLS-----PAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRA 139 (305)
T ss_pred ----hHHHHHHhc--ccCCEEEEehHhhhC-----HHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCc
Confidence 222222222 346899999999883 222333333333222110 000 00 012347899999999
Q ss_pred CCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHh
Q 001031 1100 FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1169 (1183)
Q Consensus 1100 ~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~~A 1169 (1183)
..+++++++||...+.++.++.+++.++++..+....+. ++..+..|++.+.|+. +.+..++..+...+
T Consensus 140 ~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a 209 (305)
T TIGR00635 140 GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFA 209 (305)
T ss_pred cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHH
Confidence 999999999998889999999999999999988765543 4556788999998865 66677777665443
No 71
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=2.8e-15 Score=183.16 Aligned_cols=219 Identities=23% Similarity=0.341 Sum_probs=168.6
Q ss_pred CCccccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 001031 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1183)
Q Consensus 446 ~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLil 525 (1183)
-.+++|+|+++--- |..|.-|.+-+- .||+++. |.+-=.-.-+.+||+|||| .-...||||+|-+-|++++-+
T Consensus 303 ~~~t~V~FkDVAG~--deAK~El~E~V~-fLKNP~~--Y~~lGAKiPkGvLL~GPPG--TGKTLLAKAiAGEAgVPF~sv 375 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGV--DEAKEELMEFVK-FLKNPEQ--YQELGAKIPKGVLLVGPPG--TGKTLLAKAIAGEAGVPFFSV 375 (774)
T ss_pred CCCCCCccccccCc--HHHHHHHHHHHH-HhcCHHH--HHHcCCcCcCceEEECCCC--CcHHHHHHHHhcccCCceeee
Confidence 67888999999988 999999999876 7998765 5443355568899999999 689999999999999998754
Q ss_pred ecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCce
Q 001031 526 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 605 (1183)
Q Consensus 526 Ds~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 605 (1183)
-. +|+. |
T Consensus 376 SG----------SEFv------E--------------------------------------------------------- 382 (774)
T KOG0731|consen 376 SG----------SEFV------E--------------------------------------------------------- 382 (774)
T ss_pred ch----------HHHH------H---------------------------------------------------------
Confidence 32 1111 0
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchh
Q 001031 606 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 685 (1183)
Q Consensus 606 k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~ 685 (1183)
.|+|. ..=
T Consensus 383 ~~~g~--------------------------------------------------------------~as---------- 390 (774)
T KOG0731|consen 383 MFVGV--------------------------------------------------------------GAS---------- 390 (774)
T ss_pred Hhccc--------------------------------------------------------------chH----------
Confidence 01110 000
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEEcChhhhhc---------CCh---hhHHHHHHHHhcC--CCCEEEEEeccCCCccc
Q 001031 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLT---------GNN---DAYGALKSKLENL--PSNVVVIGSHTQLDSRK 751 (1183)
Q Consensus 686 ~k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~---------~~~---~~~~~i~~~L~~L--~g~vivIgs~~~~d~~k 751 (1183)
.++.||..+.. ..|.||||++||-.-. +|+ +.++-+--.++.+ .++||||++||
T Consensus 391 ---rvr~lf~~ar~---~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tn------ 458 (774)
T KOG0731|consen 391 ---RVRDLFPLARK---NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATN------ 458 (774)
T ss_pred ---HHHHHHHHhhc---cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccC------
Confidence 17788888877 8999999999997422 233 3333333344444 34899999999
Q ss_pred ccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhh
Q 001031 752 EKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVET 829 (1183)
Q Consensus 752 ~k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd 829 (1183)
+||-+|+ |||| ||+|++.+++||
T Consensus 459 ------------------------r~d~ld~-------------------------------allrpGRfdr~i~i~~p~ 483 (774)
T KOG0731|consen 459 ------------------------RPDILDP-------------------------------ALLRPGRFDRQIQIDLPD 483 (774)
T ss_pred ------------------------CccccCH-------------------------------HhcCCCccccceeccCCc
Confidence 6666776 9999 999999999999
Q ss_pred hhhccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhc
Q 001031 830 LKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 883 (1183)
Q Consensus 830 ~~gR~~Il~IHT~l~~~~l~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~ 883 (1183)
+++|.+|+++|..-..-..+++++..||.+|.||+||||.-+|++|+..|..+.
T Consensus 484 ~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~ 537 (774)
T KOG0731|consen 484 VKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKG 537 (774)
T ss_pred hhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhc
Confidence 999999999995522222488999999999999999999999999999998754
No 72
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.59 E-value=5.2e-14 Score=161.16 Aligned_cols=202 Identities=21% Similarity=0.256 Sum_probs=141.6
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1025 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~ 1025 (1183)
.+|++++|+++.++.+..++..... . ..++.++||+||||+|||+||+++|++++..+..++.+.+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~-------~--~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~--- 89 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK-------R--GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK--- 89 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh-------c--CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC---
Confidence 4799999999999999887753111 1 234578999999999999999999999999887776543321
Q ss_pred cchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHh--hcCCc-cc----CCCCEEEEEecCC
Q 001031 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN--WDGLR-TK----DKERVLVLAATNR 1098 (1183)
Q Consensus 1026 GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~--Ldgl~-~k----~~~~VlVIaTTN~ 1098 (1183)
...+..++... ..+.||||||||.+. ...++.+..+++..... ++... .. ...++.+|++|++
T Consensus 90 ---~~~l~~~l~~l--~~~~vl~IDEi~~l~-----~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~ 159 (328)
T PRK00080 90 ---PGDLAAILTNL--EEGDVLFIDEIHRLS-----PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred ---hHHHHHHHHhc--ccCCEEEEecHhhcc-----hHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC
Confidence 12344444432 346899999999882 22233333333322110 11100 00 1134788999999
Q ss_pred CCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhH
Q 001031 1099 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPI 1170 (1183)
Q Consensus 1099 p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~~Ai 1170 (1183)
...+++.+++||..++.++.|+.+++.+|++......++. ++..+..|+..+.|+. +.+..+++.+...+.
T Consensus 160 ~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~a~ 231 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRDFAQ 231 (328)
T ss_pred cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHH
Confidence 9999999999999899999999999999999988876554 5556889999998754 677777776655443
No 73
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=5.3e-14 Score=170.39 Aligned_cols=186 Identities=22% Similarity=0.249 Sum_probs=136.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-------------- 1010 (1183)
..+|++|+|++.+++.|.+.+.. .+.++.+||+||+|+|||++|+.+|+.+++
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~-------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PC 78 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQ-------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPC 78 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCC
Confidence 46899999999999999988763 234467899999999999999999999976
Q ss_pred ---------------cEEEEecCccccccccchHHHHHHHHHHHh----ccCCeEEEEeCCcccccCCCCcchHHHHHHH
Q 001031 1011 ---------------NFINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKM 1071 (1183)
Q Consensus 1011 ---------------pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~----k~~PsILfIDEID~Ll~~r~~~~~~e~l~~i 1071 (1183)
.+++++... ......++.+...+. .....|+||||+|.|. ...
T Consensus 79 G~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls------------~~A 140 (700)
T PRK12323 79 GQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT------------NHA 140 (700)
T ss_pred cccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC------------HHH
Confidence 122222211 011234555554433 2234799999999882 233
Q ss_pred HHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHc
Q 001031 1072 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1150 (1183)
Q Consensus 1072 l~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~T 1150 (1183)
.|.|+..|+. ...+++||++|+.+..|.+++++|| .++.|..++.++..+.++.++.++++. ++..+..|++.+
T Consensus 141 aNALLKTLEE----PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A 215 (700)
T PRK12323 141 FNAMLKTLEE----PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAA 215 (700)
T ss_pred HHHHHHhhcc----CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 4566666554 3467899999999999999999999 789999999999999999988877655 344577888888
Q ss_pred CCCcHHHHHHHHHHHHH
Q 001031 1151 DGYSGSDLKNLCVTAAH 1167 (1183)
Q Consensus 1151 eGySg~DL~~L~~~Aa~ 1167 (1183)
+| +.++..+++..+..
T Consensus 216 ~G-s~RdALsLLdQaia 231 (700)
T PRK12323 216 QG-SMRDALSLTDQAIA 231 (700)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 76 55666677665443
No 74
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=8.8e-14 Score=164.91 Aligned_cols=185 Identities=18% Similarity=0.232 Sum_probs=135.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p------------- 1011 (1183)
..+|++++|++.+...|...+.. .+.++.+||+||+|||||++|+.+|+.+++.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~-------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKS-------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 46899999999999999887752 2233569999999999999999999998763
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHh----ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHH
Q 001031 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1183)
Q Consensus 1012 -----------fi~I~~s~L~s~~~GesE~~Ir~lF~~A~----k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL 1076 (1183)
|+.++... ......++.+...+. .....|+||||+|.|- ....+.|+
T Consensus 81 C~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~A~NALL 142 (484)
T PRK14956 81 CLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQSFNALL 142 (484)
T ss_pred HHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HHHHHHHH
Confidence 22332211 011223444443332 2345699999999882 22445556
Q ss_pred HhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcH
Q 001031 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg 1155 (1183)
..++. .+..+++|++|+.++.|.+++++|+ .++.|..++.++..++++.++..+++. ++..+..|++.++|. .
T Consensus 143 KtLEE----Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd-~ 216 (484)
T PRK14956 143 KTLEE----PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGS-V 216 (484)
T ss_pred HHhhc----CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCh-H
Confidence 55543 3467899999999999999999999 688999999999999999998887654 566788999999874 5
Q ss_pred HHHHHHHHHHH
Q 001031 1156 SDLKNLCVTAA 1166 (1183)
Q Consensus 1156 ~DL~~L~~~Aa 1166 (1183)
++.-++++.++
T Consensus 217 RdAL~lLeq~i 227 (484)
T PRK14956 217 RDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHHH
Confidence 66666666544
No 75
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4.8e-15 Score=172.34 Aligned_cols=243 Identities=19% Similarity=0.220 Sum_probs=176.6
Q ss_pred ccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecCC
Q 001031 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (1183)
Q Consensus 450 ~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs~~ 529 (1183)
+|-|+.||.- +..|..|.+++-..+...+. | .+|.+.-+.|||.||+| .-..||+||+|-+.+|.+.-+-.+.
T Consensus 149 ~v~~~di~gl--~~~k~~l~e~vi~p~lr~d~--F-~glr~p~rglLLfGPpg--tGKtmL~~aiAsE~~atff~iSass 221 (428)
T KOG0740|consen 149 NVGWDDIAGL--EDAKQSLKEAVILPLLRPDL--F-LGLREPVRGLLLFGPPG--TGKTMLAKAIATESGATFFNISASS 221 (428)
T ss_pred cccccCCcch--hhHHHHhhhhhhhcccchHh--h-hccccccchhheecCCC--CchHHHHHHHHhhhcceEeeccHHH
Confidence 5789999998 89999999999888777665 2 48888999999999999 6899999999999999876554433
Q ss_pred CCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCceeeec
Q 001031 530 LPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFVG 609 (1183)
Q Consensus 530 ~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~g 609 (1183)
|++.
T Consensus 222 LtsK---------------------------------------------------------------------------- 225 (428)
T KOG0740|consen 222 LTSK---------------------------------------------------------------------------- 225 (428)
T ss_pred hhhh----------------------------------------------------------------------------
Confidence 3332
Q ss_pred cCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhHHHH
Q 001031 610 NVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKLA 689 (1183)
Q Consensus 610 ~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~k~~ 689 (1183)
|.++..-+
T Consensus 226 ------------------------------------------------------------------------~~Ge~eK~ 233 (428)
T KOG0740|consen 226 ------------------------------------------------------------------------YVGESEKL 233 (428)
T ss_pred ------------------------------------------------------------------------ccChHHHH
Confidence 22222334
Q ss_pred HHHHHHHHhhccCCCCEEEEEcChhhhhcC-ChhhHH-HHHHHHhcC----------CCCEEEEEeccCCCcccccCCCC
Q 001031 690 INELFEVALNESKSSPLIVFVKDIEKSLTG-NNDAYG-ALKSKLENL----------PSNVVVIGSHTQLDSRKEKSHPG 757 (1183)
Q Consensus 690 ~~~l~evl~s~~~~~P~Ilf~~Die~~l~~-~~~~~~-~i~~~L~~L----------~g~vivIgs~~~~d~~k~k~~~~ 757 (1183)
+.+||+|+.. .||.|+||+|||.+|.. .+..+. .-+.+.+.| ..+|+||||||
T Consensus 234 vralf~vAr~---~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN------------ 298 (428)
T KOG0740|consen 234 VRALFKVARS---LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATN------------ 298 (428)
T ss_pred HHHHHHHHHh---cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCC------------
Confidence 8899999999 99999999999999982 111111 011112211 34999999999
Q ss_pred CceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHHHHHHHHhhhhhhhhhccchh
Q 001031 758 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNII 837 (1183)
Q Consensus 758 ~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~Il 837 (1183)
+|+.+|. |.+|||-+-+|+++||...|..|+
T Consensus 299 ------------------~P~e~De-------------------------------a~~Rrf~kr~yiplPd~etr~~~~ 329 (428)
T KOG0740|consen 299 ------------------RPWELDE-------------------------------AARRRFVKRLYIPLPDYETRSLLW 329 (428)
T ss_pred ------------------CchHHHH-------------------------------HHHHHhhceeeecCCCHHHHHHHH
Confidence 6777764 999999999999999999998776
Q ss_pred HHHHHhhh--CCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccch-hhhHHHHHhhhhhh
Q 001031 838 SIRSVLSR--NGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESI-MYGLNILQGIQSES 914 (1183)
Q Consensus 838 ~IHT~l~~--~~l~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sI-kv~~~dF~~al~ei 914 (1183)
+=- |.+ +.+.+.+++.|+..|.||+|.||..+|.+|+..-+...-. + .....++.+.+ .+...||..+...+
T Consensus 330 ~~l--l~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~--~-~~~~~~~~~~~r~i~~~df~~a~~~i 404 (428)
T KOG0740|consen 330 KQL--LKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGG--T-TDLEFIDADKIRPITYPDFKNAFKNI 404 (428)
T ss_pred HHH--HHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhccc--c-hhhhhcchhccCCCCcchHHHHHHhh
Confidence 532 444 4568889999999999999999999999998765443221 0 11222333332 23456776665555
Q ss_pred hh
Q 001031 915 KS 916 (1183)
Q Consensus 915 kp 916 (1183)
++
T Consensus 405 ~~ 406 (428)
T KOG0740|consen 405 KP 406 (428)
T ss_pred cc
Confidence 54
No 76
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=8.3e-14 Score=170.44 Aligned_cols=186 Identities=21% Similarity=0.234 Sum_probs=136.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p------------- 1011 (1183)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~-------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~s 78 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDG-------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRA 78 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHH
Confidence 46899999999999999988752 2344678999999999999999999998652
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHhc----cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHH
Q 001031 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1183)
Q Consensus 1012 -----------fi~I~~s~L~s~~~GesE~~Ir~lF~~A~k----~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL 1076 (1183)
+++++..+ ......++.++..+.. ....||||||+|.|. ....+.|+
T Consensus 79 Cr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------~~A~NALL 140 (830)
T PRK07003 79 CREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------NHAFNAML 140 (830)
T ss_pred HHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC------------HHHHHHHH
Confidence 23332211 1112345555554432 234799999999882 12234455
Q ss_pred HhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcH
Q 001031 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg 1155 (1183)
..|+. ...+++||++||.+..|.++|++|| .++.|..++.++..++|+.++..+++. ++..+..|++..+|- .
T Consensus 141 KtLEE----PP~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gs-m 214 (830)
T PRK07003 141 KTLEE----PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGS-M 214 (830)
T ss_pred HHHHh----cCCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-H
Confidence 54443 2357899999999999999999999 789999999999999999999887764 566688899999874 4
Q ss_pred HHHHHHHHHHHH
Q 001031 1156 SDLKNLCVTAAH 1167 (1183)
Q Consensus 1156 ~DL~~L~~~Aa~ 1167 (1183)
++..+++.++..
T Consensus 215 RdALsLLdQAia 226 (830)
T PRK07003 215 RDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHHH
Confidence 566666665553
No 77
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.55 E-value=6.5e-14 Score=175.16 Aligned_cols=198 Identities=19% Similarity=0.283 Sum_probs=142.3
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001031 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1016 (1183)
Q Consensus 947 tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~pfi~I~ 1016 (1183)
.++.++|.+.....+.+.+.. +...++||+||||||||++|+++|... +..++.++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r--------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 456789999888888876642 122578999999999999999999875 45556666
Q ss_pred cCccc--cccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEE
Q 001031 1017 MSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1094 (1183)
Q Consensus 1017 ~s~L~--s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIa 1094 (1183)
...+. ..+.|+.+..++.+|..+.+..++||||||||.|++.+.....+.....++..++ ....+.+|+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L---------~~g~i~vIg 320 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---------SSGKIRVIG 320 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH---------hCCCeEEEe
Confidence 55554 3567888999999999998888999999999999876543222222222222222 236799999
Q ss_pred ecCCCC-----CCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-----ChhhHHHHHHHcC-----CCcHHHHH
Q 001031 1095 ATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMAD-----GYSGSDLK 1159 (1183)
Q Consensus 1095 TTN~p~-----~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-----~didl~~LA~~Te-----GySg~DL~ 1159 (1183)
+|+..+ .+|++|.||| ..|.|+.|+.+++.+|++.+..+.... .+..+..++..+. .+-+....
T Consensus 321 ATt~~E~~~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKai 399 (758)
T PRK11034 321 STTYQEFSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_pred cCChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHH
Confidence 998753 6899999999 589999999999999999887654332 2333444444333 34456777
Q ss_pred HHHHHHHHH
Q 001031 1160 NLCVTAAHC 1168 (1183)
Q Consensus 1160 ~L~~~Aa~~ 1168 (1183)
.|+++|+..
T Consensus 400 dlldea~a~ 408 (758)
T PRK11034 400 DVIDEAGAR 408 (758)
T ss_pred HHHHHHHHh
Confidence 788887753
No 78
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.55 E-value=7.8e-15 Score=176.82 Aligned_cols=216 Identities=24% Similarity=0.366 Sum_probs=157.0
Q ss_pred cCCCccccccccccccchhhHHHHHHhhhhhhccccc-cccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeE
Q 001031 444 LGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 522 (1183)
Q Consensus 444 ~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~-~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~L 522 (1183)
...+..+++|+++.-+ ++.|.-|..... .|++.+ |.+++. ...+.|||.||+| .-+.+||||||+++++++
T Consensus 45 ~~~~~~~~~~~di~g~--~~~k~~l~~~~~-~l~~~~~~~~~g~---~~~~giLL~GppG--tGKT~la~alA~~~~~~~ 116 (495)
T TIGR01241 45 LNEEKPKVTFKDVAGI--DEAKEELMEIVD-FLKNPSKFTKLGA---KIPKGVLLVGPPG--TGKTLLAKAVAGEAGVPF 116 (495)
T ss_pred ccCCCCCCCHHHhCCH--HHHHHHHHHHHH-HHHCHHHHHhcCC---CCCCcEEEECCCC--CCHHHHHHHHHHHcCCCe
Confidence 3455789999999987 999988887766 477654 333432 3346799999999 799999999999988877
Q ss_pred EEEecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccC
Q 001031 523 LIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKG 602 (1183)
Q Consensus 523 LilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 602 (1183)
+.++.+.+..
T Consensus 117 ~~i~~~~~~~---------------------------------------------------------------------- 126 (495)
T TIGR01241 117 FSISGSDFVE---------------------------------------------------------------------- 126 (495)
T ss_pred eeccHHHHHH----------------------------------------------------------------------
Confidence 6554221100
Q ss_pred CceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCc
Q 001031 603 DRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLG 682 (1183)
Q Consensus 603 drvk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~ 682 (1183)
.|+|.
T Consensus 127 ---~~~g~------------------------------------------------------------------------ 131 (495)
T TIGR01241 127 ---MFVGV------------------------------------------------------------------------ 131 (495)
T ss_pred ---HHhcc------------------------------------------------------------------------
Confidence 00000
Q ss_pred chhHHHHHHHHHHHHhhccCCCCEEEEEcChhhhhcCC--------h---hhHHHHHHHHhcCC--CCEEEEEeccCCCc
Q 001031 683 DEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------N---DAYGALKSKLENLP--SNVVVIGSHTQLDS 749 (1183)
Q Consensus 683 ~~~~k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~~--------~---~~~~~i~~~L~~L~--g~vivIgs~~~~d~ 749 (1183)
..-.+..+|+.+.. ..|.||||||+|.+.... . +..+.|-..|+.+. ++|+|||+||
T Consensus 132 ---~~~~l~~~f~~a~~---~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn---- 201 (495)
T TIGR01241 132 ---GASRVRDLFEQAKK---NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATN---- 201 (495)
T ss_pred ---cHHHHHHHHHHHHh---cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecC----
Confidence 00015566776655 789999999999976421 1 12222223334332 4799999999
Q ss_pred ccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhh
Q 001031 750 RKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDV 827 (1183)
Q Consensus 750 ~k~k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~L 827 (1183)
+|+.+|+ |++| ||++++++++
T Consensus 202 --------------------------~~~~ld~-------------------------------al~r~gRfd~~i~i~~ 224 (495)
T TIGR01241 202 --------------------------RPDVLDP-------------------------------ALLRPGRFDRQVVVDL 224 (495)
T ss_pred --------------------------ChhhcCH-------------------------------HHhcCCcceEEEEcCC
Confidence 6677776 9988 9999999999
Q ss_pred hhhhhccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhh
Q 001031 828 ETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 881 (1183)
Q Consensus 828 pd~~gR~~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~ 881 (1183)
|+...|.+|+++|.. ..++ .+.++..+|..+.||+++||+.+|++|+..+..
T Consensus 225 Pd~~~R~~il~~~l~--~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~ 277 (495)
T TIGR01241 225 PDIKGREEILKVHAK--NKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAAR 277 (495)
T ss_pred CCHHHHHHHHHHHHh--cCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999854 2233 577899999999999999999999999887765
No 79
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.54 E-value=1.2e-13 Score=151.64 Aligned_cols=189 Identities=23% Similarity=0.323 Sum_probs=141.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~ 1024 (1183)
...|++++|+++++++|.-++.....+ ....-++|||||||.|||+||..||+++|.++...+++.+.-.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r---------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~- 91 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKR---------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP- 91 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhc---------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh-
Confidence 357899999999999998887653333 2344689999999999999999999999999988877665321
Q ss_pred ccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhc---CCccc----CCCCEEEEEecC
Q 001031 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD---GLRTK----DKERVLVLAATN 1097 (1183)
Q Consensus 1025 ~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ld---gl~~k----~~~~VlVIaTTN 1097 (1183)
..+..++.... ...||||||||+| ++...+.+.-.+..|...+- |...+ +-.++.+|++|.
T Consensus 92 -----gDlaaiLt~Le--~~DVLFIDEIHrl-----~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATT 159 (332)
T COG2255 92 -----GDLAAILTNLE--EGDVLFIDEIHRL-----SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATT 159 (332)
T ss_pred -----hhHHHHHhcCC--cCCeEEEehhhhc-----ChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecc
Confidence 23344444332 3479999999998 44555555555555543221 11111 226789999999
Q ss_pred CCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcH
Q 001031 1098 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1098 ~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg 1155 (1183)
+...|...++.||+.+..+...+.++..+|+.......++. .+....+||+++.|-..
T Consensus 160 r~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 160 RAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred ccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcH
Confidence 99999999999999999999999999999999987766654 45557889999988543
No 80
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.52 E-value=2.1e-14 Score=169.69 Aligned_cols=144 Identities=21% Similarity=0.255 Sum_probs=110.4
Q ss_pred HHHHHHHHhhccCCCCEEEEEcChhhhhcC--------ChhhHHHHHHHHhcC-----CCCEEEEEeccCCCcccccCCC
Q 001031 690 INELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHP 756 (1183)
Q Consensus 690 ~~~l~evl~s~~~~~P~Ilf~~Die~~l~~--------~~~~~~~i~~~L~~L-----~g~vivIgs~~~~d~~k~k~~~ 756 (1183)
+..+|+.+.. ..|.||||+|+|.++.. ..+....+...|..+ .++|+||++||
T Consensus 265 vr~lF~~A~~---~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATN----------- 330 (438)
T PTZ00361 265 VRELFRVAEE---NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATN----------- 330 (438)
T ss_pred HHHHHHHHHh---CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecC-----------
Confidence 6677777765 78999999999997752 223333344444444 35899999999
Q ss_pred CCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhhcc
Q 001031 757 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQS 834 (1183)
Q Consensus 757 ~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~ 834 (1183)
.||.+|+ |++| ||++++++++||...|.
T Consensus 331 -------------------r~d~LDp-------------------------------aLlRpGRfd~~I~~~~Pd~~~R~ 360 (438)
T PTZ00361 331 -------------------RIESLDP-------------------------------ALIRPGRIDRKIEFPNPDEKTKR 360 (438)
T ss_pred -------------------ChHHhhH-------------------------------HhccCCeeEEEEEeCCCCHHHHH
Confidence 4445554 8888 99999999999999999
Q ss_pred chhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhHHHHHhhhhh
Q 001031 835 NIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSE 913 (1183)
Q Consensus 835 ~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~dF~~al~e 913 (1183)
+|+++|+. ...+ ++++++.++..+.+|+|+||+.+|++|...|+.+.. ..+...||..+...
T Consensus 361 ~Il~~~~~--k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r---------------~~Vt~~D~~~A~~~ 423 (438)
T PTZ00361 361 RIFEIHTS--KMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERR---------------MKVTQADFRKAKEK 423 (438)
T ss_pred HHHHHHHh--cCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC---------------CccCHHHHHHHHHH
Confidence 99999965 2234 678999999999999999999999999999987532 13566777776655
Q ss_pred h
Q 001031 914 S 914 (1183)
Q Consensus 914 i 914 (1183)
+
T Consensus 424 v 424 (438)
T PTZ00361 424 V 424 (438)
T ss_pred H
Confidence 4
No 81
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=4.3e-13 Score=166.89 Aligned_cols=191 Identities=22% Similarity=0.214 Sum_probs=133.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------EEEe-
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------INIS- 1016 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pf-------i~I~- 1016 (1183)
..+|++|+|++.+++.|+..+.. .+.++.+||+||||||||++|+++|+.+++.. ..|.
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~-------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~s 78 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQ-------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSS 78 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchH
Confidence 36899999999999999887752 23345679999999999999999999997641 1110
Q ss_pred cCccccc------cc-c---chHHHHHHHHHHHh----ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCC
Q 001031 1017 MSSITSK------WF-G---EGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1082 (1183)
Q Consensus 1017 ~s~L~s~------~~-G---esE~~Ir~lF~~A~----k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl 1082 (1183)
|-.+... .+ + .....++.+...+. .....|+||||+|.|- ....+.|+..|..
T Consensus 79 C~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT------------~eAqNALLKtLEE- 145 (944)
T PRK14949 79 CVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------RSSFNALLKTLEE- 145 (944)
T ss_pred HHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC------------HHHHHHHHHHHhc-
Confidence 0000000 00 0 11223455544332 2234699999999882 2344555555544
Q ss_pred cccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHH
Q 001031 1083 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 1161 (1183)
Q Consensus 1083 ~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L 1161 (1183)
.+..+++|++|+.+..|.+++++|+ .++.|..++.++..+++++++..+++. .+..+..|+..++| +.+++.++
T Consensus 146 ---PP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~ALnL 220 (944)
T PRK14949 146 ---PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDALSL 220 (944)
T ss_pred ---cCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 2356788888888888999999999 789999999999999999988876554 45568888988887 45666677
Q ss_pred HHHHH
Q 001031 1162 CVTAA 1166 (1183)
Q Consensus 1162 ~~~Aa 1166 (1183)
|..|.
T Consensus 221 LdQal 225 (944)
T PRK14949 221 TDQAI 225 (944)
T ss_pred HHHHH
Confidence 76544
No 82
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.51 E-value=2.4e-13 Score=165.13 Aligned_cols=205 Identities=22% Similarity=0.311 Sum_probs=134.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEE
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFIN 1014 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~pfi~ 1014 (1183)
..+|++++|++..++.++..+. ...+.++||+||||||||++|+++.+.+ +.+|+.
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~--------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALC--------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHh--------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 3689999999999988876542 1123589999999999999999998653 468999
Q ss_pred EecCcc-------ccccccchHHHH---HHHHH----------HHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHH
Q 001031 1015 ISMSSI-------TSKWFGEGEKYV---KAVFS----------LASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1074 (1183)
Q Consensus 1015 I~~s~L-------~s~~~GesE~~I---r~lF~----------~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~ 1074 (1183)
++|... ....++....-+ ...|. ...+...++|||||||.| ++..+..+.+++++
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L-----~~~~q~~LL~~Le~ 201 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGEL-----HPVQMNKLLKVLED 201 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhC-----CHHHHHHHHHHHHh
Confidence 998642 111111100000 00010 111234589999999988 33344444444433
Q ss_pred HHHhhc-----CC------------cccCCCCEEEE-EecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhcc
Q 001031 1075 FMVNWD-----GL------------RTKDKERVLVL-AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE 1136 (1183)
Q Consensus 1075 LL~~Ld-----gl------------~~k~~~~VlVI-aTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~ 1136 (1183)
....+. +. ....+..+++| +||+.++.+++++++|+ ..+.++.++.+++.+|++..+++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~k~~ 280 (531)
T TIGR02902 202 RKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAEKIG 280 (531)
T ss_pred CeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHHHcC
Confidence 221111 00 00012334555 55678999999999999 5788888899999999999998866
Q ss_pred CC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHH
Q 001031 1137 LA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIR 1171 (1183)
Q Consensus 1137 l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~~Air 1171 (1183)
+. ++..++.|+..+. +++++.++++.|+..+..
T Consensus 281 i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~ 314 (531)
T TIGR02902 281 INLEKHALELIVKYAS--NGREAVNIVQLAAGIALG 314 (531)
T ss_pred CCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhh
Confidence 54 4555677777664 789999999999987754
No 83
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=5.6e-13 Score=161.99 Aligned_cols=186 Identities=23% Similarity=0.249 Sum_probs=136.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-------------- 1010 (1183)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~-------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~s 77 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALER-------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCAT 77 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHH
Confidence 46899999999999999888752 234578999999999999999999999876
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHh----ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHH
Q 001031 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1183)
Q Consensus 1011 ----------pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~----k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL 1076 (1183)
.++.++.++- .....++.+...+. .....|+||||+|.|- ....+.|+
T Consensus 78 C~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS------------~~A~NALL 139 (702)
T PRK14960 78 CKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS------------THSFNALL 139 (702)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC------------HHHHHHHH
Confidence 2333433221 11234555554432 2234699999999882 12334455
Q ss_pred HhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcH
Q 001031 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg 1155 (1183)
..++. .+..+.+|++|+.+..+...+++|+ .++.|..++.++..+.++.++.++++. .+..+..|+..+.| +.
T Consensus 140 KtLEE----PP~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dL 213 (702)
T PRK14960 140 KTLEE----PPEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SL 213 (702)
T ss_pred HHHhc----CCCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 55544 2355778888888888889999999 789999999999999999999887664 55568889988876 66
Q ss_pred HHHHHHHHHHHH
Q 001031 1156 SDLKNLCVTAAH 1167 (1183)
Q Consensus 1156 ~DL~~L~~~Aa~ 1167 (1183)
+++.+++..+..
T Consensus 214 RdALnLLDQaIa 225 (702)
T PRK14960 214 RDALSLTDQAIA 225 (702)
T ss_pred HHHHHHHHHHHH
Confidence 777777766554
No 84
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=5.9e-13 Score=163.35 Aligned_cols=185 Identities=24% Similarity=0.286 Sum_probs=133.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p------------- 1011 (1183)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~-------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~ 78 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDL-------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDN 78 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHH
Confidence 36899999999999999887763 2234568999999999999999999999763
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHh----ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHH
Q 001031 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1183)
Q Consensus 1012 -----------fi~I~~s~L~s~~~GesE~~Ir~lF~~A~----k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL 1076 (1183)
++.++... ...-..++.+...+. .....|+||||+|.|- ....+.|+
T Consensus 79 C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls------------~~a~NALL 140 (647)
T PRK07994 79 CREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALL 140 (647)
T ss_pred HHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC------------HHHHHHHH
Confidence 22333221 011223455444332 2344699999999882 23345555
Q ss_pred HhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcH
Q 001031 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg 1155 (1183)
..++. .+..+++|++|+.+..|.+++++|+ ..+.|..++.++...+++.++..+++. ++..+..|+..++| +.
T Consensus 141 KtLEE----Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~ 214 (647)
T PRK07994 141 KTLEE----PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SM 214 (647)
T ss_pred HHHHc----CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 55544 3467888888888899999999998 889999999999999999998876654 45567889988887 45
Q ss_pred HHHHHHHHHHH
Q 001031 1156 SDLKNLCVTAA 1166 (1183)
Q Consensus 1156 ~DL~~L~~~Aa 1166 (1183)
++..+++..|.
T Consensus 215 R~Al~lldqai 225 (647)
T PRK07994 215 RDALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHHH
Confidence 56666665544
No 85
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=1.1e-12 Score=157.07 Aligned_cols=185 Identities=18% Similarity=0.211 Sum_probs=130.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-------------- 1010 (1183)
..+|++++|++.+++.|+..+.. .+.++++||+||||||||++|+++|+.+++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~-------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKK-------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 46899999999999988887652 234467999999999999999999999865
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHhc----cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHH
Q 001031 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1183)
Q Consensus 1011 ----------pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k----~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL 1076 (1183)
.++.++.+. ......++.+...+.. ....||||||+|.|. ....+.|+
T Consensus 77 c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------~~a~~~LL 138 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------KEAFNALL 138 (472)
T ss_pred HHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH------------HHHHHHHH
Confidence 244444321 1112345555554432 234699999999882 12234455
Q ss_pred HhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcH
Q 001031 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg 1155 (1183)
..++. .+..+++|++|+.+..+.+++++|+ .++.+..++.++...+++..+...++. ++..+..|+..+.|-.
T Consensus 139 k~LE~----p~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~Gdl- 212 (472)
T PRK14962 139 KTLEE----PPSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGL- 212 (472)
T ss_pred HHHHh----CCCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH-
Confidence 55543 2245777777777789999999999 689999999999999999988776543 5666888998887644
Q ss_pred HHHHHHHHHHH
Q 001031 1156 SDLKNLCVTAA 1166 (1183)
Q Consensus 1156 ~DL~~L~~~Aa 1166 (1183)
+++.+++..++
T Consensus 213 R~aln~Le~l~ 223 (472)
T PRK14962 213 RDALTMLEQVW 223 (472)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 86
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.49 E-value=7.7e-13 Score=168.17 Aligned_cols=185 Identities=19% Similarity=0.334 Sum_probs=136.6
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~pfi~I 1015 (1183)
..+++++|.++....+.+.+.. +...++||+||||+|||++|+.+|+.+ +..++.+
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r--------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLR--------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhc--------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 4677899999987766664431 122579999999999999999999986 3557778
Q ss_pred ecCcccc--ccccchHHHHHHHHHHHhcc-CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEE
Q 001031 1016 SMSSITS--KWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1183)
Q Consensus 1016 ~~s~L~s--~~~GesE~~Ir~lF~~A~k~-~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlV 1092 (1183)
++..+.. .+.|+.+..++.+|..+++. .+.||||||||.|.+.+...+..... +.|.-.+ .++.+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~----n~Lkp~l------~~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAA----NLLKPAL------ARGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHH----HHhhHHh------hCCCeEE
Confidence 8777653 57788899999999998753 57899999999998655432222222 1122222 2367899
Q ss_pred EEecCCC-----CCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhcc----C-CChhhHHHHHHHcCCCcH
Q 001031 1093 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE----L-ASDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1093 IaTTN~p-----~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~----l-~~didl~~LA~~TeGySg 1155 (1183)
|+||+.. ..++++|.||| ..|.|+.|+.+++.+||+.+..... + ..+..+..++.++.+|-.
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~ 391 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP 391 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence 9999753 46899999999 5899999999999999877665422 2 256678888888887653
No 87
>CHL00176 ftsH cell division protein; Validated
Probab=99.48 E-value=7.2e-14 Score=172.09 Aligned_cols=219 Identities=20% Similarity=0.276 Sum_probs=157.6
Q ss_pred ccCCCccccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeE
Q 001031 443 ILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 522 (1183)
Q Consensus 443 i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~L 522 (1183)
+....+..++|+++.-+ +..|.-|.+... .|++++. |..-=....+.|||.|||| .-+.+||||||++.++++
T Consensus 172 ~~~~~~~~~~f~dv~G~--~~~k~~l~eiv~-~lk~~~~--~~~~g~~~p~gVLL~GPpG--TGKT~LAralA~e~~~p~ 244 (638)
T CHL00176 172 FQMEADTGITFRDIAGI--EEAKEEFEEVVS-FLKKPER--FTAVGAKIPKGVLLVGPPG--TGKTLLAKAIAGEAEVPF 244 (638)
T ss_pred hhcccCCCCCHHhccCh--HHHHHHHHHHHH-HHhCHHH--HhhccCCCCceEEEECCCC--CCHHHHHHHHHHHhCCCe
Confidence 33456788999999988 888888888765 4777553 3332234456799999999 799999999999998877
Q ss_pred EEEecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccC
Q 001031 523 LIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKG 602 (1183)
Q Consensus 523 LilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 602 (1183)
+-++.+.+..
T Consensus 245 i~is~s~f~~---------------------------------------------------------------------- 254 (638)
T CHL00176 245 FSISGSEFVE---------------------------------------------------------------------- 254 (638)
T ss_pred eeccHHHHHH----------------------------------------------------------------------
Confidence 6554322100
Q ss_pred CceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCc
Q 001031 603 DRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLG 682 (1183)
Q Consensus 603 drvk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~ 682 (1183)
.|+|.
T Consensus 255 ---~~~g~------------------------------------------------------------------------ 259 (638)
T CHL00176 255 ---MFVGV------------------------------------------------------------------------ 259 (638)
T ss_pred ---Hhhhh------------------------------------------------------------------------
Confidence 00000
Q ss_pred chhHHHHHHHHHHHHhhccCCCCEEEEEcChhhhhcC--------ChhhHHHHHHHH---hcCC--CCEEEEEeccCCCc
Q 001031 683 DEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKL---ENLP--SNVVVIGSHTQLDS 749 (1183)
Q Consensus 683 ~~~~k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~--------~~~~~~~i~~~L---~~L~--g~vivIgs~~~~d~ 749 (1183)
..-.++.+|+.+.. ..|.||||||+|.+... +.+.-..+-..| +.+. .+|+|||+||
T Consensus 260 ---~~~~vr~lF~~A~~---~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN---- 329 (638)
T CHL00176 260 ---GAARVRDLFKKAKE---NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATN---- 329 (638)
T ss_pred ---hHHHHHHHHHHHhc---CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecC----
Confidence 00014556666654 78999999999997531 223222333333 3332 3899999999
Q ss_pred ccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhh
Q 001031 750 RKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDV 827 (1183)
Q Consensus 750 ~k~k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~L 827 (1183)
.||.+|+ ||+| ||++++++++
T Consensus 330 --------------------------~~~~LD~-------------------------------ALlRpGRFd~~I~v~l 352 (638)
T CHL00176 330 --------------------------RVDILDA-------------------------------ALLRPGRFDRQITVSL 352 (638)
T ss_pred --------------------------chHhhhh-------------------------------hhhccccCceEEEECC
Confidence 4555555 8988 9999999999
Q ss_pred hhhhhccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhh
Q 001031 828 ETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 882 (1183)
Q Consensus 828 pd~~gR~~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r 882 (1183)
|+.+.|.+|++.|... ..+ +++++..||..|.||+|+||+.+|++|+..+..+
T Consensus 353 Pd~~~R~~IL~~~l~~--~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~ 406 (638)
T CHL00176 353 PDREGRLDILKVHARN--KKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR 406 (638)
T ss_pred CCHHHHHHHHHHHHhh--cccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999543 333 6889999999999999999999999998887653
No 88
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.4e-12 Score=151.55 Aligned_cols=185 Identities=21% Similarity=0.254 Sum_probs=132.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p------------- 1011 (1183)
..+|++|+|++.+++.+...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~-------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~ 78 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSL-------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCII 78 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 36899999999999999887752 2334678999999999999999999998642
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHhcc----CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHH
Q 001031 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1183)
Q Consensus 1012 -----------fi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~----~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL 1076 (1183)
++.++... ......++.+...+... ...|+||||+|.+- ....+.++
T Consensus 79 c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------~~a~naLL 140 (363)
T PRK14961 79 CKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------RHSFNALL 140 (363)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC------------HHHHHHHH
Confidence 12221110 01223455665554322 24699999999872 12234455
Q ss_pred HhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcH
Q 001031 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg 1155 (1183)
..++. .+..+.+|++|+.++.+.+++++|+ ..+.+..|+.++..++++..+...+.. ++..+..|+..+.| +.
T Consensus 141 k~lEe----~~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~ 214 (363)
T PRK14961 141 KTLEE----PPQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SM 214 (363)
T ss_pred HHHhc----CCCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 55543 2346777777888888999999999 789999999999999999998887653 55667888888876 66
Q ss_pred HHHHHHHHHHH
Q 001031 1156 SDLKNLCVTAA 1166 (1183)
Q Consensus 1156 ~DL~~L~~~Aa 1166 (1183)
+++.++++.++
T Consensus 215 R~al~~l~~~~ 225 (363)
T PRK14961 215 RDALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHHH
Confidence 77777776664
No 89
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=8.6e-13 Score=159.31 Aligned_cols=187 Identities=17% Similarity=0.170 Sum_probs=136.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p------------- 1011 (1183)
..+|+||+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~-------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 78 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQ-------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCEN 78 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHH
Confidence 46899999999999999988853 2344678999999999999999999999653
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHhc----cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHH
Q 001031 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1183)
Q Consensus 1012 -----------fi~I~~s~L~s~~~GesE~~Ir~lF~~A~k----~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL 1076 (1183)
+++++.+. ......++.+...+.. ....|+||||+|.|. ....+.|+
T Consensus 79 C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls------------~~a~naLL 140 (509)
T PRK14958 79 CREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS------------GHSFNALL 140 (509)
T ss_pred HHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC------------HHHHHHHH
Confidence 34444321 1122335555544332 234699999999882 12344555
Q ss_pred HhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcH
Q 001031 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg 1155 (1183)
..++.. +..+.+|++|+.+..+...+++|+ ..+.+..++.++....++.++.++++. .+..+..|+..+.| +.
T Consensus 141 k~LEep----p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-sl 214 (509)
T PRK14958 141 KTLEEP----PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SV 214 (509)
T ss_pred HHHhcc----CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 555542 356778888888888998999999 778899999999899999999887664 55567888888876 67
Q ss_pred HHHHHHHHHHHHH
Q 001031 1156 SDLKNLCVTAAHC 1168 (1183)
Q Consensus 1156 ~DL~~L~~~Aa~~ 1168 (1183)
+++.+++..++..
T Consensus 215 R~al~lLdq~ia~ 227 (509)
T PRK14958 215 RDALSLLDQSIAY 227 (509)
T ss_pred HHHHHHHHHHHhc
Confidence 7888888776543
No 90
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.4e-14 Score=156.52 Aligned_cols=186 Identities=19% Similarity=0.238 Sum_probs=139.7
Q ss_pred eeeecCCCCCCCCCCCC---CCCCCCcccccc-cccccCCCcchhHHHHHHHHHHHHhhccCCCCEEEEEcChhhhhc--
Q 001031 645 GVRFDRSIPEGNNLGGF---CEDDHGFFCTAS-SLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT-- 718 (1183)
Q Consensus 645 gV~fd~~~~~~~~l~~~---~~~~~~~~~~~~-~~~~d~~~~~~~~k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~-- 718 (1183)
||+.-.++.+|++|-+- ..++.-|.-.+. +| ...+-.+.-.++.+||.|+.+ +.|.|+||++||-.=.
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseL---iQkylGdGpklvRqlF~vA~e---~apSIvFiDEIdAiGtKR 294 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL---IQKYLGDGPKLVRELFRVAEE---HAPSIVFIDEIDAIGTKR 294 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHH---HHHHhccchHHHHHHHHHHHh---cCCceEEeehhhhhcccc
Confidence 67777788999999821 122222333332 21 123445566789999999999 9999999999998533
Q ss_pred ------CChhhHHHHHHHHhcC-----CCCEEEEEeccCCCcccccCCCCCceeeccCcchhhhccccCCCCcccccccc
Q 001031 719 ------GNNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRS 787 (1183)
Q Consensus 719 ------~~~~~~~~i~~~L~~L-----~g~vivIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~ 787 (1183)
+..++-...-+.|++| +|.|-||.|||+.++ +||
T Consensus 295 yds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~------------------------------LDP----- 339 (440)
T KOG0726|consen 295 YDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET------------------------------LDP----- 339 (440)
T ss_pred ccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc------------------------------cCH-----
Confidence 2355555555566666 569999999997665 344
Q ss_pred ccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhhccchhHHHHH-hhhCCCCcccchhhhcccCCCC
Q 001031 788 KETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLT 864 (1183)
Q Consensus 788 ~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IHT~-l~~~~l~~vdL~~LA~~tkgfs 864 (1183)
||+| |.+|.++|++||++.++.|+.|||. |.- -++++|++|-....-++
T Consensus 340 --------------------------aLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl--~~dVnle~li~~kddlS 391 (440)
T KOG0726|consen 340 --------------------------ALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTL--AEDVNLEELIMTKDDLS 391 (440)
T ss_pred --------------------------hhcCCCccccccccCCCchhhhceeEEEeecccch--hccccHHHHhhcccccc
Confidence 9999 9999999999999999999999986 542 17899999999889999
Q ss_pred HHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhHHHHHhhhhhh
Q 001031 865 TEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSES 914 (1183)
Q Consensus 865 gAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~dF~~al~ei 914 (1183)
||||.++|++|-..|+..+ .++++..||+.+...+
T Consensus 392 GAdIkAictEaGllAlRer---------------Rm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 392 GADIKAICTEAGLLALRER---------------RMKVTMEDFKKAKEKV 426 (440)
T ss_pred cccHHHHHHHHhHHHHHHH---------------HhhccHHHHHHHHHHH
Confidence 9999999999999998743 3466788888765443
No 91
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.47 E-value=6e-13 Score=169.50 Aligned_cols=183 Identities=22% Similarity=0.356 Sum_probs=132.9
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~pfi~I 1015 (1183)
-.+++++|.++....+.+.+.. +...++||+||||+|||++|+++|..+ +.+++.+
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc--------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 3567899999877777665541 122579999999999999999999987 7788899
Q ss_pred ecCccc--cccccchHHHHHHHHHHHhc-cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEE
Q 001031 1016 SMSSIT--SKWFGEGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1183)
Q Consensus 1016 ~~s~L~--s~~~GesE~~Ir~lF~~A~k-~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlV 1092 (1183)
++..+. ..+.|+.+..++.+|..+.+ ..+.||||||||.|.+.....+.....+. |.-.+ .++.+.+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~----lkp~l------~~g~l~~ 310 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNM----LKPAL------ARGELHC 310 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHH----hcchh------hcCCCeE
Confidence 888765 35778889999999988654 46899999999999865543333222221 11111 2367999
Q ss_pred EEecCCCC-----CCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-----ChhhHHHHHHHcCCC
Q 001031 1093 LAATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGY 1153 (1183)
Q Consensus 1093 IaTTN~p~-----~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-----~didl~~LA~~TeGy 1153 (1183)
|++|+..+ .+|+++.|||. .|.+..|+.+++..|++.+..+.... .+..+...+.++++|
T Consensus 311 IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry 380 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRY 380 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhcc
Confidence 99998764 58999999995 68899999999999999887653321 233344444454443
No 92
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.5e-12 Score=155.73 Aligned_cols=187 Identities=21% Similarity=0.224 Sum_probs=139.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-------------- 1010 (1183)
..+|+|++|++.+.+.|...+.. .+.++++||+||+|+|||++|+.+|+.+++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~-------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~ 75 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL-------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHN 75 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHH
Confidence 46899999999999999887652 344578999999999999999999998743
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHhc----cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHH
Q 001031 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1183)
Q Consensus 1011 ----------pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k----~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL 1076 (1183)
.+++++.++- .....++.+...+.. ....|+||||+|.|. ....+.|+
T Consensus 76 C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------~~A~NaLL 137 (491)
T PRK14964 76 CISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------NSAFNALL 137 (491)
T ss_pred HHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC------------HHHHHHHH
Confidence 2344544321 123346666655532 234699999999882 12345566
Q ss_pred HhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcH
Q 001031 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg 1155 (1183)
..++.. +..+.+|++|+.+..+..++++|+ ..+.+..++.++..+.++.++.++++. ++..+..|++.++| +.
T Consensus 138 K~LEeP----p~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-sl 211 (491)
T PRK14964 138 KTLEEP----APHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SM 211 (491)
T ss_pred HHHhCC----CCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 666542 356778888888888999999999 789999999999999999999887764 56668888988876 67
Q ss_pred HHHHHHHHHHHHH
Q 001031 1156 SDLKNLCVTAAHC 1168 (1183)
Q Consensus 1156 ~DL~~L~~~Aa~~ 1168 (1183)
+++.++++.++..
T Consensus 212 R~alslLdqli~y 224 (491)
T PRK14964 212 RNALFLLEQAAIY 224 (491)
T ss_pred HHHHHHHHHHHHh
Confidence 7888888777653
No 93
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.47 E-value=9.8e-13 Score=167.32 Aligned_cols=185 Identities=23% Similarity=0.353 Sum_probs=139.8
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~pfi~I 1015 (1183)
..++.++|.++....+.+.+.. +..+++||+||||+|||++|+++|..+ +.+++.+
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r--------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR--------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc--------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 3567899999999999887642 233589999999999999999999886 4788999
Q ss_pred ecCccc--cccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEE
Q 001031 1016 SMSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1183)
Q Consensus 1016 ~~s~L~--s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVI 1093 (1183)
++..+. ..|.|+.+..++.+|..+....+.||||||||.|++.....+..... +-|...+ .++.+.+|
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a----~lLkp~l------~rg~l~~I 311 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAA----NILKPAL------ARGELQCI 311 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHH----HHhHHHH------hCCCcEEE
Confidence 988776 35778899999999999988888999999999998765433322221 1122122 23668899
Q ss_pred EecCCC-----CCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhh----ccC-CChhhHHHHHHHcCCCcH
Q 001031 1094 AATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK----EEL-ASDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1094 aTTN~p-----~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k----~~l-~~didl~~LA~~TeGySg 1155 (1183)
++|+.. ...++++.+|| ..+.++.|+.++...|++.+... .++ .++..+..++.++.+|.+
T Consensus 312 gaTt~~ey~~~ie~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALERRF-QPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 998764 35789999999 56899999999999998876543 222 255567788888887664
No 94
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.2e-12 Score=157.72 Aligned_cols=172 Identities=23% Similarity=0.319 Sum_probs=129.4
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc--------
Q 001031 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI-------- 1020 (1183)
Q Consensus 949 dDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L-------- 1020 (1183)
.|-.|++++|+.+.+++...... .. . ...=++|+||||+|||+|++.||+.++..|++++..-+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~------~~-~-kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRG 394 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT------KK-L-KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRG 394 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh------cc-C-CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcc
Confidence 36789999999999998642211 11 1 11248999999999999999999999999999987543
Q ss_pred -ccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHH-----HHHHHhhcCCcccCCCCEEEEE
Q 001031 1021 -TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMK-----NEFMVNWDGLRTKDKERVLVLA 1094 (1183)
Q Consensus 1021 -~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il-----~~LL~~Ldgl~~k~~~~VlVIa 1094 (1183)
...|+|.+...+-+....|....| +++|||||.|... .......++-.++ +.|..+.-.++. +-.+|+||+
T Consensus 395 HRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss-~rGDPaSALLEVLDPEQN~~F~DhYLev~y-DLS~VmFia 471 (782)
T COG0466 395 HRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSS-FRGDPASALLEVLDPEQNNTFSDHYLEVPY-DLSKVMFIA 471 (782)
T ss_pred ccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCC-CCCChHHHHHhhcCHhhcCchhhccccCcc-chhheEEEe
Confidence 234788888888888888888776 8899999999533 2222223332222 133333333322 236799999
Q ss_pred ecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHH
Q 001031 1095 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVIL 1132 (1183)
Q Consensus 1095 TTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL 1132 (1183)
|+|..+.++..|++|+ .+|.+.-.+.++..+|.+.||
T Consensus 472 TANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 472 TANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred ecCccccCChHHhcce-eeeeecCCChHHHHHHHHHhc
Confidence 9999999999999999 899999999999999999887
No 95
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.46 E-value=1.2e-12 Score=154.16 Aligned_cols=226 Identities=21% Similarity=0.307 Sum_probs=149.0
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhc--CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-ccccc
Q 001031 951 IGALENVKDTLKELVMLPLQRPELFCK--GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGE 1027 (1183)
Q Consensus 951 I~Gle~vk~~L~e~V~lpl~~~elf~k--~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s-~~~Ge 1027 (1183)
|+|++.+++.|...+.....+-..... ..+..+..++||+||||||||++|+++|+.++.||+.+++..+.. .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 899999999997776543332211000 012234468999999999999999999999999999999988653 57776
Q ss_pred h-HHHHHHHHHH----HhccCCeEEEEeCCcccccCCCCcch-HH-HHHHHHHHHHHhhcCCc---------ccCCCCEE
Q 001031 1028 G-EKYVKAVFSL----ASKIAPSVVFVDEVDSMLGRRENPGE-HE-AMRKMKNEFMVNWDGLR---------TKDKERVL 1091 (1183)
Q Consensus 1028 s-E~~Ir~lF~~----A~k~~PsILfIDEID~Ll~~r~~~~~-~e-~l~~il~~LL~~Ldgl~---------~k~~~~Vl 1091 (1183)
. +..+..++.. ..+..++||||||||.+.....++.. .. ....+.+.|+..|++-. .......+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 4 3344555443 23457899999999999754322211 00 00124455555555421 11123455
Q ss_pred EEEecCCCC----------------------------------------------------CCcHHHHhccCcEEEecCC
Q 001031 1092 VLAATNRPF----------------------------------------------------DLDEAVVRRLPRRLMVNLP 1119 (1183)
Q Consensus 1092 VIaTTN~p~----------------------------------------------------~Ld~aLlrRFd~vI~I~lP 1119 (1183)
+|.|+|..+ -+.|+|+.|++.++.+...
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L 312 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEEL 312 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCC
Confidence 555555410 1457788899999999999
Q ss_pred CHHHHHHHHHH----HHhh-------ccC---CChhhHHHHHHH--cCCCcHHHHHHHHHHHHHHhHHHHHhh
Q 001031 1120 DAPNREKIIRV----ILAK-------EEL---ASDVDLEGIANM--ADGYSGSDLKNLCVTAAHCPIREILEK 1176 (1183)
Q Consensus 1120 d~eeR~eILk~----iL~k-------~~l---~~didl~~LA~~--TeGySg~DL~~L~~~Aa~~Aire~le~ 1176 (1183)
+.++..+|+.. ++++ .++ ..+..+..|++. ..++-.+.|+.+++......+.++...
T Consensus 313 ~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p~~ 385 (412)
T PRK05342 313 DEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELPSR 385 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhcccc
Confidence 99999999872 3322 121 245557778875 446777899999999999999888753
No 96
>PRK04195 replication factor C large subunit; Provisional
Probab=99.46 E-value=2.1e-12 Score=155.44 Aligned_cols=184 Identities=25% Similarity=0.359 Sum_probs=130.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~ 1024 (1183)
..+|++++|++.+++.|..++.... + ..+++++||+||||+|||++|+++|++++++++.+++++....
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~-------~---g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~- 78 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWL-------K---GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA- 78 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHh-------c---CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH-
Confidence 4579999999999999999886322 1 2345789999999999999999999999999999998764321
Q ss_pred ccchHHHHHHHHHHHhc------cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCC
Q 001031 1025 FGEGEKYVKAVFSLASK------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1183)
Q Consensus 1025 ~GesE~~Ir~lF~~A~k------~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~ 1098 (1183)
..+..+...+.. ..+.||+|||+|.|.+... .. ..+.++..+.. .+..+|+++|.
T Consensus 79 -----~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d----~~----~~~aL~~~l~~------~~~~iIli~n~ 139 (482)
T PRK04195 79 -----DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED----RG----GARAILELIKK------AKQPIILTAND 139 (482)
T ss_pred -----HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc----hh----HHHHHHHHHHc------CCCCEEEeccC
Confidence 123333333322 2467999999999853211 11 12233333331 23456667888
Q ss_pred CCCCcH-HHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHH
Q 001031 1099 PFDLDE-AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLK 1159 (1183)
Q Consensus 1099 p~~Ld~-aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~ 1159 (1183)
+..+.. .+++|+ ..+.|+.|+..+...+++.++...++. ++..+..|+..+.|.-...|.
T Consensus 140 ~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 140 PYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred ccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 888887 566666 789999999999999999999887654 556688899888764443333
No 97
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=2.1e-12 Score=155.39 Aligned_cols=187 Identities=20% Similarity=0.247 Sum_probs=137.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 1012 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pf------------ 1012 (1183)
..+|+|++|++.+...|...+.. .+.++++||+||+|+|||++|+++|+.+++..
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~-------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILN-------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 46899999999999999886652 23457899999999999999999999986521
Q ss_pred ----------------EEEecCccccccccchHHHHHHHHHHHhcc----CCeEEEEeCCcccccCCCCcchHHHHHHHH
Q 001031 1013 ----------------INISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMK 1072 (1183)
Q Consensus 1013 ----------------i~I~~s~L~s~~~GesE~~Ir~lF~~A~k~----~PsILfIDEID~Ll~~r~~~~~~e~l~~il 1072 (1183)
+.++... ......++.++..+... ...|+||||+|.|. ....
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~ 145 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAF 145 (507)
T ss_pred CChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHH
Confidence 1121110 12234567777666432 34699999999872 1233
Q ss_pred HHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcC
Q 001031 1073 NEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMAD 1151 (1183)
Q Consensus 1073 ~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~Te 1151 (1183)
+.|+..++. .+..+++|++|+....+.+++++|+ .++.+..++.++...+++.++.++++. ++..+..|+..++
T Consensus 146 naLLk~LEe----pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~ 220 (507)
T PRK06645 146 NALLKTLEE----PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSE 220 (507)
T ss_pred HHHHHHHhh----cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 445555543 2356788878888888999999999 689999999999999999999887764 4556788999888
Q ss_pred CCcHHHHHHHHHHHHHH
Q 001031 1152 GYSGSDLKNLCVTAAHC 1168 (1183)
Q Consensus 1152 GySg~DL~~L~~~Aa~~ 1168 (1183)
| +.+++.++++.++..
T Consensus 221 G-slR~al~~Ldkai~~ 236 (507)
T PRK06645 221 G-SARDAVSILDQAASM 236 (507)
T ss_pred C-CHHHHHHHHHHHHHh
Confidence 7 667777777776543
No 98
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.45 E-value=2.6e-12 Score=151.86 Aligned_cols=180 Identities=24% Similarity=0.419 Sum_probs=127.5
Q ss_pred CCcccccCcHHHHHH---HHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001031 946 VTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~---L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s 1022 (1183)
.+|++++|++++... |.+.+.. . ...++||+||||||||+||++||+.++.+|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~-------------~-~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA-------------G-RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc-------------C-CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 578999999998665 7776642 1 22479999999999999999999999999999986532
Q ss_pred ccccchHHHHHHHHHHHh----ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEec--
Q 001031 1023 KWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-- 1096 (1183)
Q Consensus 1023 ~~~GesE~~Ir~lF~~A~----k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTT-- 1096 (1183)
....++.++..+. .....||||||||.+. .. ..+.|+..++. ..+++|++|
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----~~-------~q~~LL~~le~------~~iilI~att~ 129 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----KA-------QQDALLPHVED------GTITLIGATTE 129 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----HH-------HHHHHHHHhhc------CcEEEEEeCCC
Confidence 1234555555553 2256899999999872 11 12233333322 346666654
Q ss_pred CCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhc--cC--CChhhHHHHHHHcCCCcHHHHHHHHHHHH
Q 001031 1097 NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE--EL--ASDVDLEGIANMADGYSGSDLKNLCVTAA 1166 (1183)
Q Consensus 1097 N~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~--~l--~~didl~~LA~~TeGySg~DL~~L~~~Aa 1166 (1183)
|....+++++++|| .++.+..++.++...+++..+... .+ ..+..++.|+..+.| ..+.+.++++.++
T Consensus 130 n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 130 NPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred ChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 44568999999999 789999999999999999987652 11 345557788888865 5566667666663
No 99
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=2e-12 Score=158.41 Aligned_cols=187 Identities=23% Similarity=0.265 Sum_probs=137.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 1012 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pf------------ 1012 (1183)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.-
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~-------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDE-------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 46899999999999999988763 23457799999999999999999999986531
Q ss_pred ------------EEEecCccccccccchHHHHHHHHHHHhc----cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHH
Q 001031 1013 ------------INISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1183)
Q Consensus 1013 ------------i~I~~s~L~s~~~GesE~~Ir~lF~~A~k----~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL 1076 (1183)
+.++... ......++.++..+.. ....||||||+|.|- ....+.|+
T Consensus 79 Cr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~A~NALL 140 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KSAFNAML 140 (709)
T ss_pred HHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HHHHHHHH
Confidence 1222111 1123356666654432 234799999999872 12334555
Q ss_pred HhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcH
Q 001031 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg 1155 (1183)
..++. .+..+.+|++|+.+..+...+++|+ ..+.|..++.++...+++.++.++++. ++..+..|++.+.| +.
T Consensus 141 KtLEE----Pp~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-sl 214 (709)
T PRK08691 141 KTLEE----PPEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SM 214 (709)
T ss_pred HHHHh----CCCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CH
Confidence 55543 2356788888888999999999999 678888999999999999999987764 55568889988865 67
Q ss_pred HHHHHHHHHHHHH
Q 001031 1156 SDLKNLCVTAAHC 1168 (1183)
Q Consensus 1156 ~DL~~L~~~Aa~~ 1168 (1183)
+++.++++.++..
T Consensus 215 RdAlnLLDqaia~ 227 (709)
T PRK08691 215 RDALSLLDQAIAL 227 (709)
T ss_pred HHHHHHHHHHHHh
Confidence 7888888776653
No 100
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.45 E-value=2.5e-12 Score=150.87 Aligned_cols=192 Identities=16% Similarity=0.223 Sum_probs=128.0
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-------------
Q 001031 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI------------- 1013 (1183)
Q Consensus 947 tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi------------- 1013 (1183)
.|++|+|++.+++.|++.+......+..+ + .+.++.+||+||+|+|||++|+++|+.+.+...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~---~-~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA---G-SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc---C-CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 58899999999999999997544322211 1 224578999999999999999999998855310
Q ss_pred --EEecCcccc---ccccchHHHHHHHHHHHhcc----CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcc
Q 001031 1014 --NISMSSITS---KWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT 1084 (1183)
Q Consensus 1014 --~I~~s~L~s---~~~GesE~~Ir~lF~~A~k~----~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~ 1084 (1183)
.-+.+++.- ....-....++.++..++.. ...|+||||+|.|. ....+.|+..++..
T Consensus 79 ~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~------------~~aanaLLk~LEep-- 144 (394)
T PRK07940 79 VLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT------------ERAANALLKAVEEP-- 144 (394)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC------------HHHHHHHHHHhhcC--
Confidence 000111100 00011233577888777643 23699999999982 11234555555442
Q ss_pred cCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHH
Q 001031 1085 KDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCV 1163 (1183)
Q Consensus 1085 k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~ 1163 (1183)
+.++++|.+|+.++.|.+++++|+ ..+.|+.|+.++..+++.. +..+ +......++..++|..+..+..+..
T Consensus 145 --~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~---~~~~-~~~~a~~la~~s~G~~~~A~~l~~~ 216 (394)
T PRK07940 145 --PPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVR---RDGV-DPETARRAARASQGHIGRARRLATD 216 (394)
T ss_pred --CCCCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHH---hcCC-CHHHHHHHHHHcCCCHHHHHHHhcC
Confidence 234555555656899999999999 7899999999887776653 2233 3455778899999988877666544
No 101
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=7.9e-13 Score=158.21 Aligned_cols=214 Identities=20% Similarity=0.311 Sum_probs=146.7
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc------c-
Q 001031 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI------T- 1021 (1183)
Q Consensus 949 dDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L------~- 1021 (1183)
+|-.|++++|+.+.+++.--.. ++ .-..+-+.|+||||+|||++++.||+.+|..|++++..-+ .
T Consensus 411 eDHYgm~dVKeRILEfiAV~kL------rg--s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkG 482 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKL------RG--SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKG 482 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhh------cc--cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcc
Confidence 4688999999999998863111 11 1122348999999999999999999999999999986433 2
Q ss_pred --cccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHH-----HHHHHhhcCCcccCCCCEEEEE
Q 001031 1022 --SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMK-----NEFMVNWDGLRTKDKERVLVLA 1094 (1183)
Q Consensus 1022 --s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il-----~~LL~~Ldgl~~k~~~~VlVIa 1094 (1183)
..|+|.+...+-+.+....-..| +++|||||.+.. ........++-.++ ..|+.+.-.++. +-.+|+|||
T Consensus 483 HRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~-g~qGDPasALLElLDPEQNanFlDHYLdVp~-DLSkVLFic 559 (906)
T KOG2004|consen 483 HRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS-GHQGDPASALLELLDPEQNANFLDHYLDVPV-DLSKVLFIC 559 (906)
T ss_pred cceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC-CCCCChHHHHHHhcChhhccchhhhcccccc-chhheEEEE
Confidence 34788888888888877776665 889999999962 21111222222222 123433333332 237899999
Q ss_pred ecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhh-----ccC-------CChhhHHHHHHHcC--CCc--HHHH
Q 001031 1095 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-----EEL-------ASDVDLEGIANMAD--GYS--GSDL 1158 (1183)
Q Consensus 1095 TTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k-----~~l-------~~didl~~LA~~Te--GyS--g~DL 1158 (1183)
|+|..+.+++.+++|+ .+|++.-...++..+|.+.||-. ..+ ..+.-...|-.+|. |.- -..|
T Consensus 560 TAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~i 638 (906)
T KOG2004|consen 560 TANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQI 638 (906)
T ss_pred eccccccCChhhhhhh-heeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999 89999999999999999998743 122 22222222333332 211 2567
Q ss_pred HHHHHHHHHHhHHHHH
Q 001031 1159 KNLCVTAAHCPIREIL 1174 (1183)
Q Consensus 1159 ~~L~~~Aa~~Aire~l 1174 (1183)
..+|+.+|+.-++..-
T Consensus 639 ekI~Rk~Al~vv~~~~ 654 (906)
T KOG2004|consen 639 EKICRKVALKVVEGEN 654 (906)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 7778888777666653
No 102
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.44 E-value=2.3e-12 Score=164.54 Aligned_cols=184 Identities=21% Similarity=0.363 Sum_probs=136.3
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~pfi~I 1015 (1183)
..++.++|.++....+.+.+.. +...++||+||||+|||++++++|..+ +.+++.+
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 3567899999987777665531 223578999999999999999999886 6778888
Q ss_pred ecCccc--cccccchHHHHHHHHHHHhcc-CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEE
Q 001031 1016 SMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1183)
Q Consensus 1016 ~~s~L~--s~~~GesE~~Ir~lF~~A~k~-~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlV 1092 (1183)
++..+. ..|.|+.+..++.+|..+.+. .+.||||||||.|++.....+..... +.|...+ ....+.+
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~----~~Lk~~l------~~g~i~~ 305 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAG----NMLKPAL------ARGELHC 305 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHH----HHhchhh------hcCceEE
Confidence 877765 357788899999999988664 58999999999998644332222221 2222111 2367899
Q ss_pred EEecCCC-----CCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-----ChhhHHHHHHHcCCCc
Q 001031 1093 LAATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMADGYS 1154 (1183)
Q Consensus 1093 IaTTN~p-----~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-----~didl~~LA~~TeGyS 1154 (1183)
|++|+.. ..+|+++.||| ..+.++.|+.+++..|++.+..+.... .+..+..++.++.+|-
T Consensus 306 IgaTt~~e~r~~~~~d~al~rRf-~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALERRF-QPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred EEeCcHHHHHHHhhcCHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 9999765 46899999999 468899999999999999887664332 4455677777777655
No 103
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.44 E-value=2.5e-13 Score=168.41 Aligned_cols=127 Identities=17% Similarity=0.348 Sum_probs=99.0
Q ss_pred HHHHHHHHhhccCCCCEEEEEcChhhhhcC--------Chh---hHHHHHHHHhcCCC--CEEEEEeccCCCcccccCCC
Q 001031 690 INELFEVALNESKSSPLIVFVKDIEKSLTG--------NND---AYGALKSKLENLPS--NVVVIGSHTQLDSRKEKSHP 756 (1183)
Q Consensus 690 ~~~l~evl~s~~~~~P~Ilf~~Die~~l~~--------~~~---~~~~i~~~L~~L~g--~vivIgs~~~~d~~k~k~~~ 756 (1183)
+..+|+.+.. ..|.||||+|+|.+..+ +.+ ..+.+-..|+.+.+ .|||||+||
T Consensus 233 ~~~~f~~a~~---~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN----------- 298 (644)
T PRK10733 233 VRDMFEQAKK---AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATN----------- 298 (644)
T ss_pred HHHHHHHHHh---cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecC-----------
Confidence 4455555544 68999999999997542 122 22222233344433 799999999
Q ss_pred CCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhhcc
Q 001031 757 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQS 834 (1183)
Q Consensus 757 ~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~ 834 (1183)
+||.+|+ |++| ||++++++++||..+|.
T Consensus 299 -------------------~p~~lD~-------------------------------Al~RpgRfdr~i~v~~Pd~~~R~ 328 (644)
T PRK10733 299 -------------------RPDVLDP-------------------------------ALLRPGRFDRQVVVGLPDVRGRE 328 (644)
T ss_pred -------------------ChhhcCH-------------------------------HHhCCcccceEEEcCCCCHHHHH
Confidence 6777877 9998 99999999999999999
Q ss_pred chhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhh
Q 001031 835 NIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 882 (1183)
Q Consensus 835 ~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r 882 (1183)
.|++.|. ...++ .++++..||..|.||+|+||+.+|++|+..|..+
T Consensus 329 ~Il~~~~--~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~ 375 (644)
T PRK10733 329 QILKVHM--RRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 375 (644)
T ss_pred HHHHHHh--hcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999994 44455 6788999999999999999999999999998764
No 104
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.42 E-value=2.8e-12 Score=149.42 Aligned_cols=222 Identities=23% Similarity=0.331 Sum_probs=147.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-cccc-c
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-E 1027 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s-~~~G-e 1027 (1183)
.|+|++++++.+..++.....+..+.....-..++++|||+||||+|||++|+++|..++.+|+.+++..+.. .|.| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 4889999999998777643222221111111224589999999999999999999999999999999987763 6777 5
Q ss_pred hHHHHHHHHHHHh-------------------------------------------------------------------
Q 001031 1028 GEKYVKAVFSLAS------------------------------------------------------------------- 1040 (1183)
Q Consensus 1028 sE~~Ir~lF~~A~------------------------------------------------------------------- 1040 (1183)
.+..++.+|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 5666777666550
Q ss_pred ------------------------------------------------------------------------ccCCeEEE
Q 001031 1041 ------------------------------------------------------------------------KIAPSVVF 1048 (1183)
Q Consensus 1041 ------------------------------------------------------------------------k~~PsILf 1048 (1183)
..+.+|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 12457999
Q ss_pred EeCCcccccCCCCcchHHHH-HHHHHHHHHhhcCCc------ccCCCCEEEEEecC----CCCCCcHHHHhccCcEEEec
Q 001031 1049 VDEVDSMLGRRENPGEHEAM-RKMKNEFMVNWDGLR------TKDKERVLVLAATN----RPFDLDEAVVRRLPRRLMVN 1117 (1183)
Q Consensus 1049 IDEID~Ll~~r~~~~~~e~l-~~il~~LL~~Ldgl~------~k~~~~VlVIaTTN----~p~~Ld~aLlrRFd~vI~I~ 1117 (1183)
|||||.++.+..+. ..... .-+.+.|+..+.|-. .-+..++++|++.. .|.+|-|+|.-||+.++.+.
T Consensus 253 iDEiDKIa~~~~~~-~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~ 331 (441)
T TIGR00390 253 IDEIDKIAKKGESS-GADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQ 331 (441)
T ss_pred EEchhhhcccCCCC-CCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECC
Confidence 99999998554211 11111 225556666666522 12347899998873 57788999999999999999
Q ss_pred CCCHHHHHHHH----HHHHhh-------ccC---CChhhHHHHHHHc-------CCCcHHHHHHHHHHHHHHhHHH
Q 001031 1118 LPDAPNREKII----RVILAK-------EEL---ASDVDLEGIANMA-------DGYSGSDLKNLCVTAAHCPIRE 1172 (1183)
Q Consensus 1118 lPd~eeR~eIL----k~iL~k-------~~l---~~didl~~LA~~T-------eGySg~DL~~L~~~Aa~~Aire 1172 (1183)
.++.++...|| ..++++ +++ ..+..+..||+.. ++.-.+-|+.++.........+
T Consensus 332 ~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe 407 (441)
T TIGR00390 332 ALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFE 407 (441)
T ss_pred CCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhc
Confidence 99999988877 223222 111 1344456666543 3444556666666555444433
No 105
>PLN03025 replication factor C subunit; Provisional
Probab=99.42 E-value=3.8e-12 Score=145.46 Aligned_cols=181 Identities=23% Similarity=0.251 Sum_probs=123.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 1019 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg-----~pfi~I~~s~ 1019 (1183)
..+|++++|++++.+.|+.++.. . ...++||+||||||||++|+++|+++. ..++.++.++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~----------~----~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD----------G----NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc----------C----CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 46899999999999998876642 1 123699999999999999999999972 2356666554
Q ss_pred cccccccchHHHHHHHHHH-Hh------ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEE
Q 001031 1020 ITSKWFGEGEKYVKAVFSL-AS------KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1183)
Q Consensus 1020 L~s~~~GesE~~Ir~lF~~-A~------k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlV 1092 (1183)
..+. ..++..... +. .....||+|||+|.|. ...+.++.+ .++.. .....+
T Consensus 75 ~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-----~~aq~aL~~-------~lE~~----~~~t~~ 132 (319)
T PLN03025 75 DRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-----SGAQQALRR-------TMEIY----SNTTRF 132 (319)
T ss_pred cccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-----HHHHHHHHH-------HHhcc----cCCceE
Confidence 3211 122322211 11 1235799999999882 222333322 22221 133567
Q ss_pred EEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHH
Q 001031 1093 LAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCV 1163 (1183)
Q Consensus 1093 IaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~ 1163 (1183)
|.+||....+.+++++|+ ..+.+..|+.++....++.++.++++. ++..+..|+..+.| ..+.+.+.++
T Consensus 133 il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq 202 (319)
T PLN03025 133 ALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQ 202 (319)
T ss_pred EEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 778888889999999998 689999999999999999999887654 56668888888776 3344444444
No 106
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=4.3e-12 Score=155.51 Aligned_cols=186 Identities=20% Similarity=0.243 Sum_probs=134.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p------------- 1011 (1183)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~-------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC 78 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQ-------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC 78 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC
Confidence 36899999999999999988763 2334668999999999999999999998752
Q ss_pred ----------------EEEEecCccccccccchHHHHHHHHHHHhcc----CCeEEEEeCCcccccCCCCcchHHHHHHH
Q 001031 1012 ----------------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKM 1071 (1183)
Q Consensus 1012 ----------------fi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~----~PsILfIDEID~Ll~~r~~~~~~e~l~~i 1071 (1183)
++.++... ......++.+...+... .-.|+||||+|.|. ...
T Consensus 79 g~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------~~a 140 (618)
T PRK14951 79 GVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------NTA 140 (618)
T ss_pred CccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC------------HHH
Confidence 22222211 11123456665554322 23599999999882 122
Q ss_pred HHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHc
Q 001031 1072 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1150 (1183)
Q Consensus 1072 l~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~T 1150 (1183)
.+.|+..++. .+..+.+|++|+.+..+...+++|+ .++.|..++.++..+.++.++.++++. ++..+..|+..+
T Consensus 141 ~NaLLKtLEE----PP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 141 FNAMLKTLEE----PPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHHHHHhccc----CCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 4455555544 2356777777788888888999999 789999999999999999998887665 455688889888
Q ss_pred CCCcHHHHHHHHHHHHH
Q 001031 1151 DGYSGSDLKNLCVTAAH 1167 (1183)
Q Consensus 1151 eGySg~DL~~L~~~Aa~ 1167 (1183)
+| +.+++.+++..+..
T Consensus 216 ~G-slR~al~lLdq~ia 231 (618)
T PRK14951 216 RG-SMRDALSLTDQAIA 231 (618)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 86 66777777766553
No 107
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.42 E-value=2.7e-12 Score=144.07 Aligned_cols=179 Identities=25% Similarity=0.459 Sum_probs=126.0
Q ss_pred CCcccccCcHHHHHH---HHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecCc
Q 001031 946 VTFDDIGALENVKDT---LKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSS 1019 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~---L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p---fi~I~~s~ 1019 (1183)
.+++|++|++++..+ |+.++. +. ...+++||||||||||+||+.|+....-+ |++++...
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ie----------q~----~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~ 200 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIE----------QN----RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN 200 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHH----------cC----CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc
Confidence 467788888776533 333333 12 23589999999999999999999988665 66666433
Q ss_pred cccccccchHHHHHHHHHHHhcc-----CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEE
Q 001031 1020 ITSKWFGEGEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1094 (1183)
Q Consensus 1020 L~s~~~GesE~~Ir~lF~~A~k~-----~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIa 1094 (1183)
...+.++.+|+.+++. ...|||||||+++ +.. -...|+-. -+++.|++|+
T Consensus 201 -------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRF-----Nks-------QQD~fLP~------VE~G~I~lIG 255 (554)
T KOG2028|consen 201 -------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRF-----NKS-------QQDTFLPH------VENGDITLIG 255 (554)
T ss_pred -------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhh-----hhh-------hhhcccce------eccCceEEEe
Confidence 2345789999988654 3589999999987 211 11233322 2457788998
Q ss_pred ec--CCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHh---h-c----cCC------ChhhHHHHHHHcCCCcHHHH
Q 001031 1095 AT--NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA---K-E----ELA------SDVDLEGIANMADGYSGSDL 1158 (1183)
Q Consensus 1095 TT--N~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~---k-~----~l~------~didl~~LA~~TeGySg~DL 1158 (1183)
+| |+.+.|..++++|+ +++.+.....++...|+.+-+. + . ++. .+--++.|+..++|-....|
T Consensus 256 ATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aL 334 (554)
T KOG2028|consen 256 ATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAAL 334 (554)
T ss_pred cccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHH
Confidence 77 77899999999999 7888888888888888887443 1 1 121 23347889999999887777
Q ss_pred HHHHHH
Q 001031 1159 KNLCVT 1164 (1183)
Q Consensus 1159 ~~L~~~ 1164 (1183)
..|--.
T Consensus 335 N~Lems 340 (554)
T KOG2028|consen 335 NALEMS 340 (554)
T ss_pred HHHHHH
Confidence 655433
No 108
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=6.9e-12 Score=151.97 Aligned_cols=185 Identities=23% Similarity=0.279 Sum_probs=130.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-------------- 1010 (1183)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+.+|+.+.+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~-------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~s 78 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALET-------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCEN 78 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 36899999999999999887752 234456999999999999999999998864
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHh----ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHH
Q 001031 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1183)
Q Consensus 1011 ----------pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~----k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL 1076 (1183)
.++.++... ..| -..++.+...+. .....|+||||+|.|- ....+.|+
T Consensus 79 C~~i~~~~~~dlieidaas----~~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls------------~~a~naLL 140 (546)
T PRK14957 79 CVAINNNSFIDLIEIDAAS----RTG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLS------------KQSFNALL 140 (546)
T ss_pred HHHHhcCCCCceEEeeccc----ccC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhcc------------HHHHHHHH
Confidence 222332211 011 123444444433 2245699999999882 12344555
Q ss_pred HhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcH
Q 001031 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg 1155 (1183)
..++.. +..+.+|++|+.+..+.+++++|+ ..+.|..++.++..+.++.++.++++. ++..+..|+..+.| +.
T Consensus 141 K~LEep----p~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dl 214 (546)
T PRK14957 141 KTLEEP----PEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SL 214 (546)
T ss_pred HHHhcC----CCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 555542 355777777777888888899999 899999999999999999988887654 55567888888865 55
Q ss_pred HHHHHHHHHHH
Q 001031 1156 SDLKNLCVTAA 1166 (1183)
Q Consensus 1156 ~DL~~L~~~Aa 1166 (1183)
+++.+++..++
T Consensus 215 R~alnlLek~i 225 (546)
T PRK14957 215 RDALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 109
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=3e-12 Score=161.46 Aligned_cols=185 Identities=18% Similarity=0.158 Sum_probs=130.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p------------- 1011 (1183)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|||||++|+.||+.+++.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~-------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS-------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 46899999999999999988752 2334569999999999999999999999652
Q ss_pred -------------EEEEecCccccccccchHHHHHHHHHH----HhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHH
Q 001031 1012 -------------FINISMSSITSKWFGEGEKYVKAVFSL----ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1074 (1183)
Q Consensus 1012 -------------fi~I~~s~L~s~~~GesE~~Ir~lF~~----A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~ 1074 (1183)
|+.++.... .....++.+-.. .......|+||||+|.|- ....+.
T Consensus 78 C~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt------------~~a~Na 139 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT------------PQGFNA 139 (824)
T ss_pred HHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC------------HHHHHH
Confidence 222222110 012233333222 233455799999999882 223455
Q ss_pred HHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCC
Q 001031 1075 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1153 (1183)
Q Consensus 1075 LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGy 1153 (1183)
|+..|+.. ...++||++|+.++.|.++|++|+ .++.|..++.++..++|+.++.++++. .+..+..|+....|
T Consensus 140 LLK~LEEp----P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG- 213 (824)
T PRK07764 140 LLKIVEEP----PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG- 213 (824)
T ss_pred HHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 66666543 356788888888888999999999 789999999999999999999887765 44456777777765
Q ss_pred cHHHHHHHHHHHH
Q 001031 1154 SGSDLKNLCVTAA 1166 (1183)
Q Consensus 1154 Sg~DL~~L~~~Aa 1166 (1183)
+.+++.++++..+
T Consensus 214 dlR~Al~eLEKLi 226 (824)
T PRK07764 214 SVRDSLSVLDQLL 226 (824)
T ss_pred CHHHHHHHHHHHH
Confidence 5555555554433
No 110
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.41 E-value=4.9e-13 Score=155.32 Aligned_cols=127 Identities=24% Similarity=0.381 Sum_probs=96.1
Q ss_pred HHHHHHHHhhccCCCCEEEEEcChhhhhcCC--------hh---hHHHHHHHHhcC--CCCEEEEEeccCCCcccccCCC
Q 001031 690 INELFEVALNESKSSPLIVFVKDIEKSLTGN--------ND---AYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHP 756 (1183)
Q Consensus 690 ~~~l~evl~s~~~~~P~Ilf~~Die~~l~~~--------~~---~~~~i~~~L~~L--~g~vivIgs~~~~d~~k~k~~~ 756 (1183)
+..+|+.+.. ..|.||||||+|.+.... .+ ....+-..++.+ .++|+||+++|
T Consensus 204 i~~~f~~a~~---~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn----------- 269 (364)
T TIGR01242 204 VREIFELAKE---KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATN----------- 269 (364)
T ss_pred HHHHHHHHHh---cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecC-----------
Confidence 5556666654 789999999999976421 11 122222233433 35899999999
Q ss_pred CCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhhcc
Q 001031 757 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQS 834 (1183)
Q Consensus 757 ~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~ 834 (1183)
.|+.+|+ +++| ||++.+++++|+...|.
T Consensus 270 -------------------~~~~ld~-------------------------------al~r~grfd~~i~v~~P~~~~r~ 299 (364)
T TIGR01242 270 -------------------RPDILDP-------------------------------ALLRPGRFDRIIEVPLPDFEGRL 299 (364)
T ss_pred -------------------ChhhCCh-------------------------------hhcCcccCceEEEeCCcCHHHHH
Confidence 4444554 7877 99999999999999999
Q ss_pred chhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhh
Q 001031 835 NIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 882 (1183)
Q Consensus 835 ~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r 882 (1183)
+|+++|+. ...+ .+.++..|+..+.||+|+||+.+|+.|...|+.+
T Consensus 300 ~Il~~~~~--~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~ 346 (364)
T TIGR01242 300 EILKIHTR--KMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIRE 346 (364)
T ss_pred HHHHHHHh--cCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999964 2333 4578999999999999999999999999999875
No 111
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=4e-12 Score=154.32 Aligned_cols=186 Identities=22% Similarity=0.263 Sum_probs=134.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p------------- 1011 (1183)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~-------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~ 78 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQ-------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSA 78 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 35899999999999999887752 2344678999999999999999999999652
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHhcc----CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHH
Q 001031 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1183)
Q Consensus 1012 -----------fi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~----~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL 1076 (1183)
++.++.+. ......++.+...+... ...|+||||+|.|. ....+.|+
T Consensus 79 C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------~~a~naLL 140 (527)
T PRK14969 79 CLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------KSAFNAML 140 (527)
T ss_pred HHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------HHHHHHHH
Confidence 12222111 11233466666655332 34699999999882 12345566
Q ss_pred HhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcH
Q 001031 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg 1155 (1183)
..++.. +..+.+|++|+.+..+...+++|+ ..+.|..++.++..+.+..++.++++. ++..+..|+..+.| +.
T Consensus 141 K~LEep----p~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-sl 214 (527)
T PRK14969 141 KTLEEP----PEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SM 214 (527)
T ss_pred HHHhCC----CCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 666542 356777777877888888899998 789999999999999999988877654 44557888888875 56
Q ss_pred HHHHHHHHHHHH
Q 001031 1156 SDLKNLCVTAAH 1167 (1183)
Q Consensus 1156 ~DL~~L~~~Aa~ 1167 (1183)
+++.+++..|..
T Consensus 215 r~al~lldqai~ 226 (527)
T PRK14969 215 RDALSLLDQAIA 226 (527)
T ss_pred HHHHHHHHHHHH
Confidence 677777766553
No 112
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=8.3e-12 Score=150.62 Aligned_cols=185 Identities=22% Similarity=0.282 Sum_probs=131.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p------------- 1011 (1183)
..+|++++|++.+++.|..++.. .+.++.+||+||||||||++|+++|+.+.+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~-------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ-------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 46899999999999999988763 2334567999999999999999999998541
Q ss_pred ----------EEEEecCccccccccchHHHHHHHHHHHhc----cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHH
Q 001031 1012 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1183)
Q Consensus 1012 ----------fi~I~~s~L~s~~~GesE~~Ir~lF~~A~k----~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~ 1077 (1183)
++.++... ......++.+...+.. ..+.||||||+|.+. ...++.|+.
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~naLLk 138 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFNALLK 138 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHHHHHH
Confidence 33333221 1112344554433332 345799999999772 223445555
Q ss_pred hhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHH
Q 001031 1078 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1156 (1183)
Q Consensus 1078 ~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~ 1156 (1183)
.++. ....+++|.+|+.+..+.+.+.+|+ ..+.|..|+.++...+++.++.+.++. ++..+..|+..+.| ..+
T Consensus 139 ~LEe----p~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR 212 (504)
T PRK14963 139 TLEE----PPEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMR 212 (504)
T ss_pred HHHh----CCCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 5543 2245777888888899999999998 689999999999999999999887664 45567888888876 445
Q ss_pred HHHHHHHHHH
Q 001031 1157 DLKNLCVTAA 1166 (1183)
Q Consensus 1157 DL~~L~~~Aa 1166 (1183)
++.++++.+.
T Consensus 213 ~aln~Lekl~ 222 (504)
T PRK14963 213 DAESLLERLL 222 (504)
T ss_pred HHHHHHHHHH
Confidence 5655555543
No 113
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=1.1e-11 Score=151.65 Aligned_cols=185 Identities=25% Similarity=0.325 Sum_probs=135.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-------------- 1010 (1183)
..+|++++|++.+.+.|+..+.. .+.++.+||+||+|||||++|+.+|+.+++
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~ 78 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ-------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI 78 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH
Confidence 46899999999999999988763 234467999999999999999999999853
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHhc----cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHH
Q 001031 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1183)
Q Consensus 1011 ----------pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k----~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL 1076 (1183)
+++.++.+. ......++.+...+.. ....|+||||+|.|. ....+.|+
T Consensus 79 C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------~~a~naLL 140 (559)
T PRK05563 79 CKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------TGAFNALL 140 (559)
T ss_pred HHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHH
Confidence 233333321 1223456666665543 234699999999882 12345556
Q ss_pred HhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcH
Q 001031 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg 1155 (1183)
..++.. +..+++|++|+.++.+.+++++|+ ..+.|..|+.++...+++.++.+.++. ++..+..|+..+.| +.
T Consensus 141 KtLEep----p~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~ 214 (559)
T PRK05563 141 KTLEEP----PAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GM 214 (559)
T ss_pred HHhcCC----CCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 555542 356777777778899999999999 678899999999999999999887654 45567888888876 56
Q ss_pred HHHHHHHHHHH
Q 001031 1156 SDLKNLCVTAA 1166 (1183)
Q Consensus 1156 ~DL~~L~~~Aa 1166 (1183)
++..++++.+.
T Consensus 215 R~al~~Ldq~~ 225 (559)
T PRK05563 215 RDALSILDQAI 225 (559)
T ss_pred HHHHHHHHHHH
Confidence 66666666553
No 114
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=1.1e-11 Score=151.22 Aligned_cols=185 Identities=18% Similarity=0.199 Sum_probs=130.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p------------- 1011 (1183)
..+|++|+|++.+++.|+..+.. .+.++.+||+||+|||||++|+++|+.+++.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~-------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA-------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 46899999999999999998762 2344568999999999999999999998642
Q ss_pred -------------EEEEecCccccccccchHHHHHHHHHHHh----ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHH
Q 001031 1012 -------------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1074 (1183)
Q Consensus 1012 -------------fi~I~~s~L~s~~~GesE~~Ir~lF~~A~----k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~ 1074 (1183)
++.++.+.. ..-..++.+...+. .....|+||||+|.|- ....+.
T Consensus 76 C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt------------~~A~NA 137 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT------------TAGFNA 137 (584)
T ss_pred HHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC------------HHHHHH
Confidence 222222110 01233444433332 2334699999999882 123455
Q ss_pred HHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCC
Q 001031 1075 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1153 (1183)
Q Consensus 1075 LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGy 1153 (1183)
|+..++. .+..+++|++|+.++.|.+++++|+ .++.|..++.++..++++.++.++++. ++..+..|+....|
T Consensus 138 LLK~LEE----pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G- 211 (584)
T PRK14952 138 LLKIVEE----PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG- 211 (584)
T ss_pred HHHHHhc----CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 6666554 2356888888888899999999997 789999999999999999999887654 45556777777665
Q ss_pred cHHHHHHHHHHHH
Q 001031 1154 SGSDLKNLCVTAA 1166 (1183)
Q Consensus 1154 Sg~DL~~L~~~Aa 1166 (1183)
+.+++.++++.++
T Consensus 212 dlR~aln~Ldql~ 224 (584)
T PRK14952 212 SPRDTLSVLDQLL 224 (584)
T ss_pred CHHHHHHHHHHHH
Confidence 5556666665544
No 115
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.39 E-value=3.7e-12 Score=141.34 Aligned_cols=184 Identities=23% Similarity=0.314 Sum_probs=129.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------EEEEecC
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------FINISMS 1018 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p------fi~I~~s 1018 (1183)
..+|+++.|++.+.+.|...+.. +-..++|||||||||||+.|+++|+++..+ +...+.+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 46899999999999999988752 122489999999999999999999999652 2334445
Q ss_pred ccccccccchHHHHHHHHHHHh---------ccCC-eEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCC
Q 001031 1019 SITSKWFGEGEKYVKAVFSLAS---------KIAP-SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1088 (1183)
Q Consensus 1019 ~L~s~~~GesE~~Ir~lF~~A~---------k~~P-sILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~ 1088 (1183)
+..+..++. ..++ -|.... -.+| -||+|||.|.|. ...+.++++++. . ...
T Consensus 98 derGisvvr--~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-----sdaq~aLrr~mE-------~----~s~ 158 (346)
T KOG0989|consen 98 DERGISVVR--EKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-----SDAQAALRRTME-------D----FSR 158 (346)
T ss_pred ccccccchh--hhhc-CHHHHhhccccccCCCCCcceEEEEechhhhh-----HHHHHHHHHHHh-------c----ccc
Confidence 544433221 1111 122111 1122 699999999982 333444444443 2 236
Q ss_pred CEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHH
Q 001031 1089 RVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLC 1162 (1183)
Q Consensus 1089 ~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~ 1162 (1183)
.+++|..||..+.|...+.+|+ ..+.|+....+.....++.+..++++. ++..++.|+..++|--.+.+..|-
T Consensus 159 ~trFiLIcnylsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred ceEEEEEcCChhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 6899999999999999999999 567777777788888888999888876 555688899988886655554443
No 116
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.9e-13 Score=146.60 Aligned_cols=188 Identities=19% Similarity=0.198 Sum_probs=134.0
Q ss_pred eeeecCCCCCCCCCCCCCC---CCCCccccc-ccccccCCCcchhHHHHHHHHHHHHhhccCCCCEEEEEcChhhhhc--
Q 001031 645 GVRFDRSIPEGNNLGGFCE---DDHGFFCTA-SSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT-- 718 (1183)
Q Consensus 645 gV~fd~~~~~~~~l~~~~~---~~~~~~~~~-~~~~~d~~~~~~~~k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~-- 718 (1183)
||..-.|+..|++|-+..- ++.-|.--+ ++|- ..+..+.-+.+.+||+++.+ +...||||++||..=.
T Consensus 213 gvllygppgtgktl~aravanrtdacfirvigselv---qkyvgegarmvrelf~mart---kkaciiffdeidaiggar 286 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELV---QKYVGEGARMVRELFEMART---KKACIIFFDEIDAIGGAR 286 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHH---HHHhhhhHHHHHHHHHHhcc---cceEEEEeeccccccCcc
Confidence 4555568899999872211 111122111 1211 23455566779999999999 8999999999998432
Q ss_pred ------CChhhHHHHHHHHhcC-----CCCEEEEEeccCCCcccccCCCCCceeeccCcchhhhccccCCCCcccccccc
Q 001031 719 ------GNNDAYGALKSKLENL-----PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRS 787 (1183)
Q Consensus 719 ------~~~~~~~~i~~~L~~L-----~g~vivIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~ 787 (1183)
+.++.-...-+.+.+| +|++-|+-||| +||.+||
T Consensus 287 fddg~ggdnevqrtmleli~qldgfdprgnikvlmatn------------------------------rpdtldp----- 331 (435)
T KOG0729|consen 287 FDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATN------------------------------RPDTLDP----- 331 (435)
T ss_pred ccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecC------------------------------CCCCcCH-----
Confidence 3344433333333344 67999999999 7888888
Q ss_pred ccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhhccchhHHHHH-hhhCCCCcccchhhhcccCCCC
Q 001031 788 KETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLT 864 (1183)
Q Consensus 788 ~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IHT~-l~~~~l~~vdL~~LA~~tkgfs 864 (1183)
||+| |++|.+||.|||++||.+|++||++ |.- . .+.-.+-||.++.|-+
T Consensus 332 --------------------------allrpgrldrkvef~lpdlegrt~i~kihaksmsv-e-rdir~ellarlcpnst 383 (435)
T KOG0729|consen 332 --------------------------ALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSV-E-RDIRFELLARLCPNST 383 (435)
T ss_pred --------------------------hhcCCcccccceeccCCcccccceeEEEecccccc-c-cchhHHHHHhhCCCCc
Confidence 9999 9999999999999999999999987 431 1 2345567999999999
Q ss_pred HHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhHHHHHhhhhhhhh
Q 001031 865 TEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKS 916 (1183)
Q Consensus 865 gAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~dF~~al~eikp 916 (1183)
||||+.+|++|--+|+.-+.. ..+.+||..+.+++..
T Consensus 384 gaeirsvcteagmfairarrk---------------~atekdfl~av~kvvk 420 (435)
T KOG0729|consen 384 GAEIRSVCTEAGMFAIRARRK---------------VATEKDFLDAVNKVVK 420 (435)
T ss_pred chHHHHHHHHhhHHHHHHHhh---------------hhhHHHHHHHHHHHHH
Confidence 999999999999999863321 1245678777666543
No 117
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.38 E-value=4.2e-12 Score=148.01 Aligned_cols=220 Identities=20% Similarity=0.320 Sum_probs=146.1
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-cccc-c
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFG-E 1027 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s-~~~G-e 1027 (1183)
.|+|+++++..+..++.....+..+.........+.++||+||||+|||+||++||+.++.+|+.+++..+.. .|.| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 4899999999998877543222211111111123578999999999999999999999999999999988774 6877 4
Q ss_pred hHHHHHHHHHHHh-------------------------------------------------------------------
Q 001031 1028 GEKYVKAVFSLAS------------------------------------------------------------------- 1040 (1183)
Q Consensus 1028 sE~~Ir~lF~~A~------------------------------------------------------------------- 1040 (1183)
.+..++.+|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4667777766661
Q ss_pred ---c--------------------------------------------------------------------cCCeEEEE
Q 001031 1041 ---K--------------------------------------------------------------------IAPSVVFV 1049 (1183)
Q Consensus 1041 ---k--------------------------------------------------------------------~~PsILfI 1049 (1183)
. ..-+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 13479999
Q ss_pred eCCcccccCCCCcchHHHH-HHHHHHHHHhhcCCc------ccCCCCEEEEEec----CCCCCCcHHHHhccCcEEEecC
Q 001031 1050 DEVDSMLGRRENPGEHEAM-RKMKNEFMVNWDGLR------TKDKERVLVLAAT----NRPFDLDEAVVRRLPRRLMVNL 1118 (1183)
Q Consensus 1050 DEID~Ll~~r~~~~~~e~l-~~il~~LL~~Ldgl~------~k~~~~VlVIaTT----N~p~~Ld~aLlrRFd~vI~I~l 1118 (1183)
||||.++.+..+. ..... .-+.+.|+..+.|-. .-+..+|++||+. ..|.+|-|+|+-||+.++.+..
T Consensus 256 DEiDKIa~~~~~~-~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~ 334 (443)
T PRK05201 256 DEIDKIAARGGSS-GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDA 334 (443)
T ss_pred EcchhhcccCCCC-CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCC
Confidence 9999998654321 11111 225556666666521 1134789999886 3567888999999999999999
Q ss_pred CCHHHHHHHHH----HHHhh-------ccC---CChhhHHHHHHHc-------CCCcHHHHHHHHHHHHHHhH
Q 001031 1119 PDAPNREKIIR----VILAK-------EEL---ASDVDLEGIANMA-------DGYSGSDLKNLCVTAAHCPI 1170 (1183)
Q Consensus 1119 Pd~eeR~eILk----~iL~k-------~~l---~~didl~~LA~~T-------eGySg~DL~~L~~~Aa~~Ai 1170 (1183)
++.++..+||. .++++ +++ ..+..+..||+.. ++.-.+-|+.++........
T Consensus 335 L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~ 407 (443)
T PRK05201 335 LTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDIS 407 (443)
T ss_pred CCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHh
Confidence 99998888872 23332 111 1344456666543 24444566666655554443
No 118
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.3e-11 Score=150.71 Aligned_cols=179 Identities=21% Similarity=0.257 Sum_probs=126.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p------------- 1011 (1183)
..+|++|+|++.+++.|..++.. .+-++.+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~-------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQE-------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 46899999999999999988752 2224689999999999999999999999753
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHH----hccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHH
Q 001031 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1183)
Q Consensus 1012 -----------fi~I~~s~L~s~~~GesE~~Ir~lF~~A----~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL 1076 (1183)
++.++...- .....++.+...+ ......||||||+|.|- ....+.|+
T Consensus 79 C~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a~naLL 140 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------REAFNALL 140 (624)
T ss_pred HHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------HHHHHHHH
Confidence 333332110 0112233332222 22345799999999882 22345555
Q ss_pred HhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccC-CChhhHHHHHHHcCCCcH
Q 001031 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l-~~didl~~LA~~TeGySg 1155 (1183)
..++.. ...+++|++|+.+..+...+++|+ .++.|..++.++...+++.++.+.++ .++..+..|+..+.|.-.
T Consensus 141 k~LEEP----~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR 215 (624)
T PRK14959 141 KTLEEP----PARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVR 215 (624)
T ss_pred HHhhcc----CCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 555442 246888888888888999999998 67899999999999999998887765 356668888888887544
Q ss_pred HHHH
Q 001031 1156 SDLK 1159 (1183)
Q Consensus 1156 ~DL~ 1159 (1183)
..|.
T Consensus 216 ~Al~ 219 (624)
T PRK14959 216 DSMS 219 (624)
T ss_pred HHHH
Confidence 3333
No 119
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.38 E-value=2.6e-11 Score=137.66 Aligned_cols=157 Identities=20% Similarity=0.258 Sum_probs=108.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~ 1024 (1183)
..+|++++|++.+++.+...+.. .+.++.+||+||||+|||++|++++++++.+++.+++.+ ..
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~- 80 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR- 80 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-
Confidence 46899999999999999887752 223355777999999999999999999999999998876 21
Q ss_pred ccchHHHHHHHHHHHh-ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCc
Q 001031 1025 FGEGEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1183)
Q Consensus 1025 ~GesE~~Ir~lF~~A~-k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld 1103 (1183)
.......+..+..... ...+.||||||+|.+. . .. ....+..+ ++.. ...+.+|++||.+..+.
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~----~---~~-~~~~L~~~---le~~----~~~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 81 IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG----L---AD-AQRHLRSF---MEAY----SKNCSFIITANNKNGII 145 (316)
T ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----C---HH-HHHHHHHH---HHhc----CCCceEEEEcCChhhch
Confidence 1111112222111111 1246899999999772 1 11 11122222 2221 24568888999999999
Q ss_pred HHHHhccCcEEEecCCCHHHHHHHHHHHHh
Q 001031 1104 EAVVRRLPRRLMVNLPDAPNREKIIRVILA 1133 (1183)
Q Consensus 1104 ~aLlrRFd~vI~I~lPd~eeR~eILk~iL~ 1133 (1183)
+++++|| ..+.++.|+.+++..+++.++.
T Consensus 146 ~~l~sR~-~~i~~~~p~~~~~~~il~~~~~ 174 (316)
T PHA02544 146 EPLRSRC-RVIDFGVPTKEEQIEMMKQMIV 174 (316)
T ss_pred HHHHhhc-eEEEeCCCCHHHHHHHHHHHHH
Confidence 9999999 6889999999999877765443
No 120
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.37 E-value=2.1e-11 Score=138.93 Aligned_cols=189 Identities=21% Similarity=0.247 Sum_probs=123.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 1019 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg-----~pfi~I~~s~ 1019 (1183)
..+|++++|++.+++.|..++.. . . ..++||+||||||||++|+++++++. .+++.+++.+
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~----------~---~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS----------P---N-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC----------C---C-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 35789999999999999887652 1 1 23699999999999999999999883 3567778766
Q ss_pred ccccc-------------ccc-------hHHHHHHHHHHHhc-----cCCeEEEEeCCcccccCCCCcchHHHHHHHHHH
Q 001031 1020 ITSKW-------------FGE-------GEKYVKAVFSLASK-----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNE 1074 (1183)
Q Consensus 1020 L~s~~-------------~Ge-------sE~~Ir~lF~~A~k-----~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~ 1074 (1183)
+.... .+. ....++.+...... ..+.+|||||+|.+. ...+ +.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----~~~~-------~~ 144 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----EDAQ-------QA 144 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----HHHH-------HH
Confidence 43211 000 01223333322222 234699999999872 1111 22
Q ss_pred HHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCC
Q 001031 1075 FMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGY 1153 (1183)
Q Consensus 1075 LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGy 1153 (1183)
+...++... ....+|.+++.+..+.+.+.+|+ ..+.+..|+.++...+++.++.+.++. ++..+..|+..+.|
T Consensus 145 L~~~le~~~----~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g- 218 (337)
T PRK12402 145 LRRIMEQYS----RTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG- 218 (337)
T ss_pred HHHHHHhcc----CCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 223333221 23455666666667778888898 678999999999999999998876654 56667888887744
Q ss_pred cHHHHHHHHHHH
Q 001031 1154 SGSDLKNLCVTA 1165 (1183)
Q Consensus 1154 Sg~DL~~L~~~A 1165 (1183)
+.+++.+.+..+
T Consensus 219 dlr~l~~~l~~~ 230 (337)
T PRK12402 219 DLRKAILTLQTA 230 (337)
T ss_pred CHHHHHHHHHHH
Confidence 444444444433
No 121
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=5.4e-13 Score=144.22 Aligned_cols=187 Identities=18% Similarity=0.213 Sum_probs=138.8
Q ss_pred eeeecCCCCCCCCCCC-CCCCCCC--cccccc-cccccCCCcchhHHHHHHHHHHHHhhccCCCCEEEEEcChhhhhc--
Q 001031 645 GVRFDRSIPEGNNLGG-FCEDDHG--FFCTAS-SLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT-- 718 (1183)
Q Consensus 645 gV~fd~~~~~~~~l~~-~~~~~~~--~~~~~~-~~~~d~~~~~~~~k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~-- 718 (1183)
||..-.|+.+|++|++ .|-.... |.--+. -+ -.++-.+.-.++...|.++.+ +.|.||||+++|-+=.
T Consensus 207 GvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL---VQMfIGdGAkLVRDAFaLAKE---kaP~IIFIDElDAIGtKR 280 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL---VQMFIGDGAKLVRDAFALAKE---KAPTIIFIDELDAIGTKR 280 (424)
T ss_pred ceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH---HhhhhcchHHHHHHHHHHhhc---cCCeEEEEechhhhcccc
Confidence 4555669999999993 3432221 222221 11 124555666778888999988 9999999999998533
Q ss_pred ------CChhhHHHHHHHHhcCCC-----CEEEEEeccCCCcccccCCCCCceeeccCcchhhhccccCCCCcccccccc
Q 001031 719 ------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRS 787 (1183)
Q Consensus 719 ------~~~~~~~~i~~~L~~L~g-----~vivIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~ 787 (1183)
|..+.-...-+.|.+|.| .|-||.|||+.|- +||
T Consensus 281 fDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi------------------------------LDP----- 325 (424)
T KOG0652|consen 281 FDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI------------------------------LDP----- 325 (424)
T ss_pred ccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc------------------------------cCH-----
Confidence 445555555556666644 9999999995443 454
Q ss_pred ccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhhccchhHHHHH-hhhCCCCcccchhhhcccCCCC
Q 001031 788 KETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLT 864 (1183)
Q Consensus 788 ~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IHT~-l~~~~l~~vdL~~LA~~tkgfs 864 (1183)
||+| |++|.+||++|++.+|..|++||.+ |.- -++++.++||..|..|.
T Consensus 326 --------------------------ALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv--~~DvNfeELaRsTddFN 377 (424)
T KOG0652|consen 326 --------------------------ALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNV--SDDVNFEELARSTDDFN 377 (424)
T ss_pred --------------------------HHhhcccccccccCCCCChHHHHHHHHHhhhhcCC--CCCCCHHHHhhcccccC
Confidence 9999 9999999999999999999999977 432 27899999999999999
Q ss_pred HHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhHHHHHhhhhhhh
Q 001031 865 TEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESK 915 (1183)
Q Consensus 865 gAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~dF~~al~eik 915 (1183)
||...++|-+|--.|+.|-.. .+...||+....++.
T Consensus 378 GAQcKAVcVEAGMiALRr~at---------------ev~heDfmegI~eVq 413 (424)
T KOG0652|consen 378 GAQCKAVCVEAGMIALRRGAT---------------EVTHEDFMEGILEVQ 413 (424)
T ss_pred chhheeeehhhhHHHHhcccc---------------cccHHHHHHHHHHHH
Confidence 999999999999999875321 345678887766554
No 122
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.36 E-value=3.9e-11 Score=129.29 Aligned_cols=189 Identities=19% Similarity=0.249 Sum_probs=121.2
Q ss_pred CCccccc--CcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc
Q 001031 946 VTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 1020 (1183)
Q Consensus 946 ~tfdDI~--Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L 1020 (1183)
.+|+++. +.......+++++. ......++|+||+|||||+||+++++++ +.+++.+++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~--------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAA--------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHh--------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 4677754 45566777776543 1233689999999999999999999887 578888888776
Q ss_pred ccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC
Q 001031 1021 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1183)
Q Consensus 1021 ~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1183)
.... ..++.... ...+|+|||+|.+... ....+.+..+++... . . ...+|+.++..+.
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~---~~~~~~L~~~l~~~~----~---~--~~~iIits~~~~~ 135 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAGQ---PEWQEALFHLYNRVR----E---A--GGRLLIAGRAAPA 135 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcCC---hHHHHHHHHHHHHHH----H---c--CCeEEEECCCChH
Confidence 5321 22332222 3469999999987211 011223333322221 1 1 2234443333443
Q ss_pred CC--c-HHHHhcc--CcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHH
Q 001031 1101 DL--D-EAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIR 1171 (1183)
Q Consensus 1101 ~L--d-~aLlrRF--d~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~~Air 1171 (1183)
.+ . +.+.+|+ ...+.++.|+.+++..+++.++.+..+. ++..+..|+... +.+.+++.++++.+...+..
T Consensus 136 ~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~-~gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 136 QLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHG-SRDMGSLMALLDALDRASLA 211 (226)
T ss_pred HCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH
Confidence 33 2 7788887 3688999999999999999887765543 555678888864 45788999998887654433
No 123
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.36 E-value=1.6e-11 Score=146.66 Aligned_cols=170 Identities=19% Similarity=0.284 Sum_probs=114.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1059 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL-----g~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r 1059 (1183)
..++||||+|+|||+|++++++++ +..++++++.++...+..........-|....+ .+.+|+||||+.+.+++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 469999999999999999999987 566888888776554433221111123333333 56899999999884322
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCC---CcHHHHhccC--cEEEecCCCHHHHHHHHHHHHhh
Q 001031 1060 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAK 1134 (1183)
Q Consensus 1060 ~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRFd--~vI~I~lPd~eeR~eILk~iL~k 1134 (1183)
..++.+..+++.+... ...+||++...|.. +++.+++||. .++.+..|+.++|..|++..+..
T Consensus 228 ---~~~~~l~~~~n~l~~~---------~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 228 ---RTQEEFFHTFNALHEA---------GKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred ---HHHHHHHHHHHHHHHC---------CCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 1223333333333321 23456655556554 6788999995 57999999999999999999887
Q ss_pred ccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001031 1135 EELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHC 1168 (1183)
Q Consensus 1135 ~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~~ 1168 (1183)
.++. ++..++.||....| +.++|..+++.....
T Consensus 296 ~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~ 329 (450)
T PRK00149 296 EGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAY 329 (450)
T ss_pred cCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHH
Confidence 5543 66668888888875 566666666655443
No 124
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.36 E-value=2.4e-11 Score=139.75 Aligned_cols=186 Identities=26% Similarity=0.337 Sum_probs=132.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p------------- 1011 (1183)
..+|++++|++.+++.|.+.+.. .+.++.+||+||||+|||++|+++|+.+.++
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~-------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKN-------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 46899999999999999887752 2344679999999999999999999997532
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHhcc----CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHH
Q 001031 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1183)
Q Consensus 1012 -----------fi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~----~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL 1076 (1183)
++.++... ......++.++..+... ...||+|||+|.+. ....+.++
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------~~~~~~Ll 138 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------KSAFNALL 138 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------HHHHHHHH
Confidence 22232211 11223466677665432 23599999999872 12344555
Q ss_pred HhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcH
Q 001031 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg 1155 (1183)
..++.. +..+++|++|+.++.+.+++++|+ ..+.++.|+.++..++++.++.+.++. ++..+..|+..+.| +.
T Consensus 139 ~~le~~----~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~ 212 (355)
T TIGR02397 139 KTLEEP----PEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SL 212 (355)
T ss_pred HHHhCC----ccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-Ch
Confidence 555442 345777778888888889999998 688999999999999999998877653 45567778888765 55
Q ss_pred HHHHHHHHHHHH
Q 001031 1156 SDLKNLCVTAAH 1167 (1183)
Q Consensus 1156 ~DL~~L~~~Aa~ 1167 (1183)
+.+.+.++.++.
T Consensus 213 ~~a~~~lekl~~ 224 (355)
T TIGR02397 213 RDALSLLDQLIS 224 (355)
T ss_pred HHHHHHHHHHHh
Confidence 666666655443
No 125
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.36 E-value=2.6e-11 Score=132.65 Aligned_cols=191 Identities=25% Similarity=0.346 Sum_probs=138.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~ 1021 (1183)
.+.++++.|.+.+++.|.+.... |.+ ..|..++||+|+.|||||++++++.+++ |..+|.+.-.++.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~-------Fl~---G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQ-------FLQ---GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-------HHc---CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 46889999999999999887654 333 3477899999999999999999999877 7777777655543
Q ss_pred cccccchHHHHHHHHHHHh-ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC
Q 001031 1022 SKWFGEGEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1183)
Q Consensus 1022 s~~~GesE~~Ir~lF~~A~-k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1183)
.+..++...+ +...-|||+|++- | ...+.. ...|...|+|--...+.+|+|.||+|+.+
T Consensus 93 ---------~l~~l~~~l~~~~~kFIlf~DDLs--F----e~~d~~-----yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 93 ---------DLPELLDLLRDRPYKFILFCDDLS--F----EEGDTE-----YKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred ---------cHHHHHHHHhcCCCCEEEEecCCC--C----CCCcHH-----HHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 3445555544 3346899999874 2 212221 24566667777666789999999999743
Q ss_pred CCcH-----------------------HHHhccCcEEEecCCCHHHHHHHHHHHHhhccCCCh-hhH----HHHHHHcCC
Q 001031 1101 DLDE-----------------------AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASD-VDL----EGIANMADG 1152 (1183)
Q Consensus 1101 ~Ld~-----------------------aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~~d-idl----~~LA~~TeG 1152 (1183)
.+.+ .+..||+..+.|..|+.++-.+|++.++.+.++.-+ ..+ ...|..-.|
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~ 232 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGG 232 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCC
Confidence 2221 455599999999999999999999999988776533 333 334455568
Q ss_pred CcHHHHHHHHHHH
Q 001031 1153 YSGSDLKNLCVTA 1165 (1183)
Q Consensus 1153 ySg~DL~~L~~~A 1165 (1183)
.||+--++.++.-
T Consensus 233 RSGRtA~QF~~~l 245 (249)
T PF05673_consen 233 RSGRTARQFIDDL 245 (249)
T ss_pred CCHHHHHHHHHHH
Confidence 9998877776643
No 126
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.6e-11 Score=150.62 Aligned_cols=184 Identities=21% Similarity=0.255 Sum_probs=132.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p------------- 1011 (1183)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~-------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~ 78 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDT-------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP 78 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH
Confidence 46899999999999999988752 2344678999999999999999999998642
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHhc----cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHH
Q 001031 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1183)
Q Consensus 1012 -----------fi~I~~s~L~s~~~GesE~~Ir~lF~~A~k----~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL 1076 (1183)
++.++... ......++.+...+.. ....|+||||+|.|- ....+.|+
T Consensus 79 c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------~~a~naLL 140 (576)
T PRK14965 79 CVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------TNAFNALL 140 (576)
T ss_pred HHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC------------HHHHHHHH
Confidence 23333221 1112345666554432 223599999999882 12334555
Q ss_pred HhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcH
Q 001031 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg 1155 (1183)
..|+. .+..+++|++|+.++.|.+++++|+ .++.|..++.++....+..++.+.++. ++..+..|+..+.| +.
T Consensus 141 k~LEe----pp~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~l 214 (576)
T PRK14965 141 KTLEE----PPPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SM 214 (576)
T ss_pred HHHHc----CCCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CH
Confidence 55554 2356888888888899999999998 688999999999999999988887654 55667888888887 44
Q ss_pred HHHHHHHHHH
Q 001031 1156 SDLKNLCVTA 1165 (1183)
Q Consensus 1156 ~DL~~L~~~A 1165 (1183)
+++.++++.+
T Consensus 215 r~al~~Ldql 224 (576)
T PRK14965 215 RDSLSTLDQV 224 (576)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 127
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.35 E-value=1.1e-11 Score=156.22 Aligned_cols=208 Identities=18% Similarity=0.277 Sum_probs=140.6
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-------
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS------- 1022 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s------- 1022 (1183)
++.|++++|+.+.+++...... . ......++|+||||+|||++++.||..++.+|+.+++.....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~------~--~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV------N--KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc------c--cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 5899999999999887642211 0 112246999999999999999999999999999988655321
Q ss_pred --ccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCc-----------ccCCCC
Q 001031 1023 --KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-----------TKDKER 1089 (1183)
Q Consensus 1023 --~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~-----------~k~~~~ 1089 (1183)
.|.|.....+.+.+..+.... .||||||||.+..... ..... .|+..++.-. .-+-.+
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~-g~~~~-------aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMR-GDPAS-------ALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccC-CCHHH-------HHHHHhccccEEEEecccccccccCCc
Confidence 245555555666666555444 4899999999853221 11112 2232222100 012367
Q ss_pred EEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhh-----ccC------CChhhHHHHHHH-cCCCcHHH
Q 001031 1090 VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-----EEL------ASDVDLEGIANM-ADGYSGSD 1157 (1183)
Q Consensus 1090 VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k-----~~l------~~didl~~LA~~-TeGySg~D 1157 (1183)
+++|+|+|.. .|+++|++|| .++.+..++.++..+|++.++-. ..+ ..+..+..|+.. +..+-.+.
T Consensus 466 v~~i~TaN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~ 543 (784)
T PRK10787 466 VMFVATSNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRS 543 (784)
T ss_pred eEEEEcCCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcH
Confidence 9999999887 5999999999 68999999999999999988841 111 123335555542 33445578
Q ss_pred HHHHHHHHHHHhHHHHHhh
Q 001031 1158 LKNLCVTAAHCPIREILEK 1176 (1183)
Q Consensus 1158 L~~L~~~Aa~~Aire~le~ 1176 (1183)
|+.+++..+..++.+.+..
T Consensus 544 LeR~I~~i~r~~l~~~~~~ 562 (784)
T PRK10787 544 LEREISKLCRKAVKQLLLD 562 (784)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 8888888777777776544
No 128
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=2.2e-11 Score=147.98 Aligned_cols=184 Identities=20% Similarity=0.300 Sum_probs=130.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-------------- 1010 (1183)
..+|++++|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~-------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN-------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 46899999999999999887752 234467999999999999999999999853
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHhcc----CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHH
Q 001031 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1183)
Q Consensus 1011 ----------pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~----~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL 1076 (1183)
.++.++... ...-..++.+...+... ...|++|||+|.|- . ...+.|+
T Consensus 79 Cr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-----~-------~A~NaLL 140 (605)
T PRK05896 79 CESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-----T-------SAWNALL 140 (605)
T ss_pred HHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-----H-------HHHHHHH
Confidence 122222211 01123455555544332 34699999999882 1 1234555
Q ss_pred HhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccC-CChhhHHHHHHHcCCCcH
Q 001031 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l-~~didl~~LA~~TeGySg 1155 (1183)
..++. .+..+++|++|+.+..|.+++++|+ .++.+..++.++...+++..+.+.++ .++..+..++.++.| +.
T Consensus 141 KtLEE----Pp~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dl 214 (605)
T PRK05896 141 KTLEE----PPKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SL 214 (605)
T ss_pred HHHHh----CCCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 55544 2356778888888899999999999 68999999999999999998887664 355567888888877 44
Q ss_pred HHHHHHHHHH
Q 001031 1156 SDLKNLCVTA 1165 (1183)
Q Consensus 1156 ~DL~~L~~~A 1165 (1183)
+++.++++.+
T Consensus 215 R~AlnlLekL 224 (605)
T PRK05896 215 RDGLSILDQL 224 (605)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 129
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=2.9e-11 Score=147.60 Aligned_cols=185 Identities=20% Similarity=0.225 Sum_probs=132.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p------------- 1011 (1183)
..+|++|+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+++.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~ 78 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES-------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS 78 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH
Confidence 46899999999999999988752 2334679999999999999999999998652
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHh----ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHH
Q 001031 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1183)
Q Consensus 1012 -----------fi~I~~s~L~s~~~GesE~~Ir~lF~~A~----k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL 1076 (1183)
++.++... ...-..++.+...+. .....|+||||+|.|- ....+.|+
T Consensus 79 C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------~~a~naLL 140 (563)
T PRK06647 79 CKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------NSAFNALL 140 (563)
T ss_pred HHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------HHHHHHHH
Confidence 22222111 011234455443332 2345699999999882 22345566
Q ss_pred HhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcH
Q 001031 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg 1155 (1183)
..++. .+..+++|++|+.+..|.+++++|+ ..+.+..++.++..++++.++...++. ++..+..|+..+.| +.
T Consensus 141 K~LEe----pp~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dl 214 (563)
T PRK06647 141 KTIEE----PPPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SV 214 (563)
T ss_pred Hhhcc----CCCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 66554 3356788888887888999999999 578999999999999999988776654 55667888888876 56
Q ss_pred HHHHHHHHHHH
Q 001031 1156 SDLKNLCVTAA 1166 (1183)
Q Consensus 1156 ~DL~~L~~~Aa 1166 (1183)
+++.++++.++
T Consensus 215 R~alslLdkli 225 (563)
T PRK06647 215 RDAYTLFDQVV 225 (563)
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 130
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=7.1e-13 Score=159.94 Aligned_cols=166 Identities=23% Similarity=0.389 Sum_probs=123.2
Q ss_pred eeeecCCCCCCCCCCCC-CCCCCC--cccccccccccCCCcchhH------HHHHHHHHHHHhhccCCCCEEEEEcChhh
Q 001031 645 GVRFDRSIPEGNNLGGF-CEDDHG--FFCTASSLRLDSSLGDEVD------KLAINELFEVALNESKSSPLIVFVKDIEK 715 (1183)
Q Consensus 645 gV~fd~~~~~~~~l~~~-~~~~~~--~~~~~~~~~~d~~~~~~~~------k~~~~~l~evl~s~~~~~P~Ilf~~Die~ 715 (1183)
||+.=.|+.+|++|-+- ...+.+ || ..|+-++.+ -.-++.||+=+.. +.|.||||++||.
T Consensus 185 GvlLvGpPGTGKTLLAkAvAgEA~VPFf--------~iSGS~FVemfVGvGAsRVRdLF~qAkk---~aP~IIFIDEiDA 253 (596)
T COG0465 185 GVLLVGPPGTGKTLLAKAVAGEAGVPFF--------SISGSDFVEMFVGVGASRVRDLFEQAKK---NAPCIIFIDEIDA 253 (596)
T ss_pred ceeEecCCCCCcHHHHHHHhcccCCCce--------eccchhhhhhhcCCCcHHHHHHHHHhhc---cCCCeEEEehhhh
Confidence 45555677788888721 111222 33 123333333 2338889988877 8999999999998
Q ss_pred hhc---------CChh---hHHHHHHHHhcCC--CCEEEEEeccCCCcccccCCCCCceeeccCcchhhhccccCCCCcc
Q 001031 716 SLT---------GNND---AYGALKSKLENLP--SNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFS 781 (1183)
Q Consensus 716 ~l~---------~~~~---~~~~i~~~L~~L~--g~vivIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~PD~~d 781 (1183)
+. ||.+ ..+-+-..++.+. ..||||+||| +||-.|
T Consensus 254 -vGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTN------------------------------RpdVlD 302 (596)
T COG0465 254 -VGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATN------------------------------RPDVLD 302 (596)
T ss_pred -cccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCC------------------------------Ccccch
Confidence 44 2333 3444444445444 3899999999 666677
Q ss_pred ccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhhccchhHHHHHhhhCCC-Ccccchhhhc
Q 001031 782 RLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCI 858 (1183)
Q Consensus 782 ~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IHT~l~~~~l-~~vdL~~LA~ 858 (1183)
+ ||+| ||+||+.+++||+++|.+|+++| ++.-.+ +++++..+|.
T Consensus 303 ~-------------------------------ALlRpgRFDRqI~V~~PDi~gRe~IlkvH--~~~~~l~~~Vdl~~iAr 349 (596)
T COG0465 303 P-------------------------------ALLRPGRFDRQILVELPDIKGREQILKVH--AKNKPLAEDVDLKKIAR 349 (596)
T ss_pred H-------------------------------hhcCCCCcceeeecCCcchhhHHHHHHHH--hhcCCCCCcCCHHHHhh
Confidence 6 9999 99999999999999999999999 444444 8999999999
Q ss_pred ccCCCCHHHHHHHHhhhhhhHhhhccC
Q 001031 859 KDQTLTTEGVEKIVGWALSHHFMHCSE 885 (1183)
Q Consensus 859 ~tkgfsgAdIe~Lv~~A~s~al~r~~~ 885 (1183)
.|.||+||+++.++.+|+.+|.++...
T Consensus 350 ~tpGfsGAdL~nl~NEAal~aar~n~~ 376 (596)
T COG0465 350 GTPGFSGADLANLLNEAALLAARRNKK 376 (596)
T ss_pred hCCCcccchHhhhHHHHHHHHHHhcCe
Confidence 999999999999999999999986543
No 131
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.34 E-value=1.9e-11 Score=143.82 Aligned_cols=226 Identities=19% Similarity=0.275 Sum_probs=147.7
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhh-hc---CCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-ccc
Q 001031 951 IGALENVKDTLKELVMLPLQRPELF-CK---GQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWF 1025 (1183)
Q Consensus 951 I~Gle~vk~~L~e~V~lpl~~~elf-~k---~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s-~~~ 1025 (1183)
++|++++++.+...+.....+-... .. ..+.....++||+||||+|||++|+++|..++.+|..+++..+.. .|+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 7999999999987764322221100 00 011122357999999999999999999999999999999887653 477
Q ss_pred cch-HHHHHHHHHHH----hccCCeEEEEeCCcccccCCCCcchH-HH-HHHHHHHHHHhhcCCcc---------cCCCC
Q 001031 1026 GEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEH-EA-MRKMKNEFMVNWDGLRT---------KDKER 1089 (1183)
Q Consensus 1026 Ges-E~~Ir~lF~~A----~k~~PsILfIDEID~Ll~~r~~~~~~-e~-l~~il~~LL~~Ldgl~~---------k~~~~ 1089 (1183)
|.. +..+..++..+ .+..++||||||||.+..++.++... .. -..+.+.|+..++|... .+..+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 764 34444444422 23467899999999997543322111 00 01244455555544321 12345
Q ss_pred EEEEEecCCCC--------------------------------------------------CCcHHHHhccCcEEEecCC
Q 001031 1090 VLVLAATNRPF--------------------------------------------------DLDEAVVRRLPRRLMVNLP 1119 (1183)
Q Consensus 1090 VlVIaTTN~p~--------------------------------------------------~Ld~aLlrRFd~vI~I~lP 1119 (1183)
.++|.|+|-.+ -+.|+|+.|++.++.+...
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL 318 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKL 318 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCC
Confidence 67777777510 1446777899999999999
Q ss_pred CHHHHHHHHHHH----Hhhc-------cC---CChhhHHHHHHH--cCCCcHHHHHHHHHHHHHHhHHHHHhh
Q 001031 1120 DAPNREKIIRVI----LAKE-------EL---ASDVDLEGIANM--ADGYSGSDLKNLCVTAAHCPIREILEK 1176 (1183)
Q Consensus 1120 d~eeR~eILk~i----L~k~-------~l---~~didl~~LA~~--TeGySg~DL~~L~~~Aa~~Aire~le~ 1176 (1183)
+.++..+|+..- +++. ++ .++..++.|++. ...+-.+.|+.+++......+.++...
T Consensus 319 ~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~p~~ 391 (413)
T TIGR00382 319 DEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDLPSL 391 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhCCCC
Confidence 999999998762 3221 11 134457778876 336777899999999999888887654
No 132
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=5.5e-11 Score=142.03 Aligned_cols=184 Identities=22% Similarity=0.259 Sum_probs=128.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p------------- 1011 (1183)
..+|+||+|++.++..|...+.. .+.++.+|||||+|+|||++|+++|+.+.+.
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~-------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~ 79 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF-------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA 79 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH
Confidence 36899999999999999887752 2344679999999999999999999988542
Q ss_pred ------------EEEEecCccccccccchHHHHHHHHHHH----hccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHH
Q 001031 1012 ------------FINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1075 (1183)
Q Consensus 1012 ------------fi~I~~s~L~s~~~GesE~~Ir~lF~~A----~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~L 1075 (1183)
++.++.... . .-..++.+-... ......||||||+|.|. ....+.|
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------~~~~n~L 141 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------KEAFNSL 141 (451)
T ss_pred HHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------HHHHHHH
Confidence 233322111 0 112233322222 23456899999999882 1233555
Q ss_pred HHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCc
Q 001031 1076 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1154 (1183)
Q Consensus 1076 L~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGyS 1154 (1183)
+..++.. +..+++|++|+.+..|.+++++|+ ..+.+..++.++...++..++.+.++. ++..+..|+..+.| +
T Consensus 142 Lk~lEep----~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-d 215 (451)
T PRK06305 142 LKTLEEP----PQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-S 215 (451)
T ss_pred HHHhhcC----CCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 6555542 246777778888889999999999 689999999999999999888876653 55667888888876 4
Q ss_pred HHHHHHHHHHH
Q 001031 1155 GSDLKNLCVTA 1165 (1183)
Q Consensus 1155 g~DL~~L~~~A 1165 (1183)
.+++.++++..
T Consensus 216 lr~a~~~Lekl 226 (451)
T PRK06305 216 LRDAESLYDYV 226 (451)
T ss_pred HHHHHHHHHHH
Confidence 44454444443
No 133
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.33 E-value=3e-11 Score=142.38 Aligned_cols=169 Identities=20% Similarity=0.292 Sum_probs=111.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1059 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL-----g~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r 1059 (1183)
..++||||+|+|||+|++++++++ +..++++++.++...+...........|....+ ...+|+||||+.+.++.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 215 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR-SVDLLLIDDIQFLAGKE 215 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH-hCCEEEEehhhhhcCCH
Confidence 469999999999999999999987 577888888776544322111101112222222 35799999999885322
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCC---CcHHHHhccC--cEEEecCCCHHHHHHHHHHHHhh
Q 001031 1060 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAK 1134 (1183)
Q Consensus 1060 ~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRFd--~vI~I~lPd~eeR~eILk~iL~k 1134 (1183)
..++.+..+++.+.. ....+||+++..|.. +++.+++||. ..+.++.|+.++|..|++..+..
T Consensus 216 ---~~~~~l~~~~n~~~~---------~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 216 ---RTQEEFFHTFNALHE---------NGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred ---HHHHHHHHHHHHHHH---------CCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 122333333333321 123355555555543 5678999995 47999999999999999999987
Q ss_pred ccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001031 1135 EELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1167 (1183)
Q Consensus 1135 ~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~ 1167 (1183)
.++. ++..+..||.+..+ +.++|..+++....
T Consensus 284 ~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~ 316 (405)
T TIGR00362 284 EGLELPDEVLEFIAKNIRS-NVRELEGALNRLLA 316 (405)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 6654 66668889988875 55666666555443
No 134
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=4.5e-11 Score=146.71 Aligned_cols=192 Identities=22% Similarity=0.170 Sum_probs=134.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe-------c
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS-------M 1017 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~-------~ 1017 (1183)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++.....+ |
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~-------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c 86 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFET-------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC 86 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC
Confidence 36899999999999999987752 334578999999999999999999999865422111 0
Q ss_pred --------------Ccccccc--ccchHHHHHHHHHHHhcc----CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHH
Q 001031 1018 --------------SSITSKW--FGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1183)
Q Consensus 1018 --------------s~L~s~~--~GesE~~Ir~lF~~A~k~----~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~ 1077 (1183)
.++.... -...-..++.+...+... ...|+||||+|.|- ....+.|+.
T Consensus 87 g~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------~~a~naLLK 154 (598)
T PRK09111 87 GVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------TAAFNALLK 154 (598)
T ss_pred cccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC------------HHHHHHHHH
Confidence 0110000 001133566666655432 34699999999882 123445555
Q ss_pred hhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHH
Q 001031 1078 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1156 (1183)
Q Consensus 1078 ~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~ 1156 (1183)
.+... +..+.+|++|+..+.+...+++|+ .++.|..++.++...+++.++.+.++. .+..+..|+..+.| +.+
T Consensus 155 tLEeP----p~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr 228 (598)
T PRK09111 155 TLEEP----PPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVR 228 (598)
T ss_pred HHHhC----CCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 55442 345777777777778888999999 689999999999999999999887654 44567788888876 566
Q ss_pred HHHHHHHHHHH
Q 001031 1157 DLKNLCVTAAH 1167 (1183)
Q Consensus 1157 DL~~L~~~Aa~ 1167 (1183)
++.++++.++.
T Consensus 229 ~al~~Ldkli~ 239 (598)
T PRK09111 229 DGLSLLDQAIA 239 (598)
T ss_pred HHHHHHHHHHh
Confidence 66666666543
No 135
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=7.2e-11 Score=137.24 Aligned_cols=187 Identities=18% Similarity=0.211 Sum_probs=129.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE----------EE
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF----------IN 1014 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pf----------i~ 1014 (1183)
..+|++++|++.+++.+...+.. .+.++++|||||||+|||++|+++|+.+..+. ..
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~-------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIEN-------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 46899999999999999887752 22346899999999999999999999885421 11
Q ss_pred EecCccccccccchHHHHHHHHHHHhc----cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCE
Q 001031 1015 ISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1090 (1183)
Q Consensus 1015 I~~s~L~s~~~GesE~~Ir~lF~~A~k----~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~V 1090 (1183)
+.... ........++.++..+.. ....||+|||+|.+. ....+.++..++.. +...
T Consensus 80 ~~l~~----~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~------------~~~~~~ll~~le~~----~~~~ 139 (367)
T PRK14970 80 FELDA----ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS------------SAAFNAFLKTLEEP----PAHA 139 (367)
T ss_pred EEecc----ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC------------HHHHHHHHHHHhCC----CCce
Confidence 11110 011123456666665542 234699999999772 11234455544432 2345
Q ss_pred EEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHH
Q 001031 1091 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1166 (1183)
Q Consensus 1091 lVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa 1166 (1183)
++|++++.+..+.+++.+|+ ..+.+..|+.++...++...+.+.++. ++..++.|+..+.| +.+.+.+.++..+
T Consensus 140 ~~Il~~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 140 IFILATTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVV 214 (367)
T ss_pred EEEEEeCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 66667777888999999998 578999999999999999988887763 56678888888765 5555555555544
No 136
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=5.4e-11 Score=147.18 Aligned_cols=190 Identities=22% Similarity=0.284 Sum_probs=132.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE---ec----
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI---SM---- 1017 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I---~~---- 1017 (1183)
..+|++|+|++.+++.|+..+.. .+.++.+||+||+|+|||++|+++|+.+.+.-... .|
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~-------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKS-------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 46899999999999999988763 23446789999999999999999999986532100 00
Q ss_pred ------Cccc-ccc-ccchHHHHHHHHHHHhc----cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCccc
Q 001031 1018 ------SSIT-SKW-FGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1085 (1183)
Q Consensus 1018 ------s~L~-s~~-~GesE~~Ir~lF~~A~k----~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k 1085 (1183)
.++. ..- .......++.+...+.. ....|++|||+|.|- ....+.|+..++..
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT------------~~A~NALLKtLEEP--- 145 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS------------KSAFNALLKTLEEP--- 145 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC------------HHHHHHHHHHhhcC---
Confidence 0100 000 00123346676665543 234699999999882 12345566666542
Q ss_pred CCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHH
Q 001031 1086 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1164 (1183)
Q Consensus 1086 ~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~ 1164 (1183)
+..+++|++|+.++.|.+++++|+ .++.+..++.++...+++.++.+.++. .+..+..||..+.| +.+++..++..
T Consensus 146 -P~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLek 222 (725)
T PRK07133 146 -PKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIAEQ 222 (725)
T ss_pred -CCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 356788888888899999999999 589999999999999999988877654 44457788888876 44555555554
Q ss_pred H
Q 001031 1165 A 1165 (1183)
Q Consensus 1165 A 1165 (1183)
+
T Consensus 223 l 223 (725)
T PRK07133 223 V 223 (725)
T ss_pred H
Confidence 4
No 137
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=5.9e-11 Score=142.82 Aligned_cols=185 Identities=21% Similarity=0.300 Sum_probs=128.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p------------- 1011 (1183)
..+|++++|++.+...|+..+.. .+.++.+||+||+|+|||++|+.+|+.+++.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~-------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n 78 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKL-------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN 78 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH
Confidence 45899999999999999888752 2334568999999999999999999998641
Q ss_pred -----------EEEEecCccccccccchHHHHHHHHHHHhc----cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHH
Q 001031 1012 -----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1183)
Q Consensus 1012 -----------fi~I~~s~L~s~~~GesE~~Ir~lF~~A~k----~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL 1076 (1183)
++.++.+. ......++.+...+.. ....|++|||+|.|. ....+.|+
T Consensus 79 c~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a~naLL 140 (486)
T PRK14953 79 CVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEAFNALL 140 (486)
T ss_pred HHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHHHHHHH
Confidence 11121111 0112234555444432 235799999999872 12234555
Q ss_pred HhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcH
Q 001031 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg 1155 (1183)
..+... +..+++|.+|+.++.+.+++.+|+ .++.+..++.++...+++.++...++. ++..+..|+..+.| +.
T Consensus 141 k~LEep----p~~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~l 214 (486)
T PRK14953 141 KTLEEP----PPRTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GM 214 (486)
T ss_pred HHHhcC----CCCeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 555442 234566666677788888999998 579999999999999999999887754 44557888888776 45
Q ss_pred HHHHHHHHHHH
Q 001031 1156 SDLKNLCVTAA 1166 (1183)
Q Consensus 1156 ~DL~~L~~~Aa 1166 (1183)
+++.++++.++
T Consensus 215 r~al~~Ldkl~ 225 (486)
T PRK14953 215 RDAASLLDQAS 225 (486)
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 138
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.32 E-value=1.1e-10 Score=134.92 Aligned_cols=203 Identities=18% Similarity=0.223 Sum_probs=129.9
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---------CcEEEEecCc
Q 001031 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------ANFINISMSS 1019 (1183)
Q Consensus 949 dDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg---------~pfi~I~~s~ 1019 (1183)
+++.|.++..+.|...+...+. ...+..++|+||||||||++++++++.+. +.++.++|..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~----------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR----------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 4789999999999887753221 12235799999999999999999998762 5788888865
Q ss_pred cccc----------cc--c--------chHHHHHHHHHHHh-ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHh
Q 001031 1020 ITSK----------WF--G--------EGEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1078 (1183)
Q Consensus 1020 L~s~----------~~--G--------esE~~Ir~lF~~A~-k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~ 1078 (1183)
..+. .. + ........++.... ...+.||+|||+|.|.... + .++.+++..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~-----~----~~L~~l~~~ 155 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD-----D----DLLYQLSRA 155 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC-----c----HHHHhHhcc
Confidence 3221 10 1 11223344454443 3456799999999995211 1 123333322
Q ss_pred hcCCcccCCCCEEEEEecCCCC---CCcHHHHhccC-cEEEecCCCHHHHHHHHHHHHhh---ccCCChhhHHHH---HH
Q 001031 1079 WDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAK---EELASDVDLEGI---AN 1148 (1183)
Q Consensus 1079 Ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRFd-~vI~I~lPd~eeR~eILk~iL~k---~~l~~didl~~L---A~ 1148 (1183)
+.. ....+.++.+|+++|.++ .+++.+.+||. ..+.+++++.++..+|++..+.. .....+..+..+ +.
T Consensus 156 ~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~ 234 (365)
T TIGR02928 156 RSN-GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAA 234 (365)
T ss_pred ccc-cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHH
Confidence 111 111236788999998875 57888888885 67999999999999999998863 122233333444 44
Q ss_pred HcCCCcHHHHHHHHHHHHHHhHHH
Q 001031 1149 MADGYSGSDLKNLCVTAAHCPIRE 1172 (1183)
Q Consensus 1149 ~TeGySg~DL~~L~~~Aa~~Aire 1172 (1183)
.+.|.. +.+.++|..|+..|..+
T Consensus 235 ~~~Gd~-R~al~~l~~a~~~a~~~ 257 (365)
T TIGR02928 235 QEHGDA-RKAIDLLRVAGEIAERE 257 (365)
T ss_pred HhcCCH-HHHHHHHHHHHHHHHHc
Confidence 445643 45566788887766554
No 139
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.32 E-value=3.6e-11 Score=150.16 Aligned_cols=182 Identities=20% Similarity=0.357 Sum_probs=124.9
Q ss_pred CCCcccccCcHHHHH---HHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001031 945 GVTFDDIGALENVKD---TLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~---~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~ 1021 (1183)
..+|++++|++.+.. .|++.+.. ....++||+||||||||++|+++++..+.+|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~--------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA--------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc--------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-
Confidence 367899999998875 45554431 122479999999999999999999999999988876431
Q ss_pred cccccchHHHHHHHHHHHh-----ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEec
Q 001031 1022 SKWFGEGEKYVKAVFSLAS-----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1096 (1183)
Q Consensus 1022 s~~~GesE~~Ir~lF~~A~-----k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTT 1096 (1183)
+ .+.++.++..+. .....||||||||.|. ...+ +.|+..+. ...+++|++|
T Consensus 89 ----~--i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-----~~qQ-------daLL~~lE------~g~IiLI~aT 144 (725)
T PRK13341 89 ----G--VKDLRAEVDRAKERLERHGKRTILFIDEVHRFN-----KAQQ-------DALLPWVE------NGTITLIGAT 144 (725)
T ss_pred ----h--hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC-----HHHH-------HHHHHHhc------CceEEEEEec
Confidence 1 112333333321 1245799999999882 1111 22332222 2456777655
Q ss_pred --CCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhh-------ccC-CChhhHHHHHHHcCCCcHHHHHHHHHHHH
Q 001031 1097 --NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-------EEL-ASDVDLEGIANMADGYSGSDLKNLCVTAA 1166 (1183)
Q Consensus 1097 --N~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k-------~~l-~~didl~~LA~~TeGySg~DL~~L~~~Aa 1166 (1183)
|....+++++++|+ .++.++.++.+++..+++.++.. ..+ .++..++.|+....| ..+.+.++++.|+
T Consensus 145 Tenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 145 TENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAV 222 (725)
T ss_pred CCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 44467889999997 67999999999999999998872 222 245567888888865 5677777777766
Q ss_pred H
Q 001031 1167 H 1167 (1183)
Q Consensus 1167 ~ 1167 (1183)
.
T Consensus 223 ~ 223 (725)
T PRK13341 223 E 223 (725)
T ss_pred H
Confidence 4
No 140
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=5.7e-12 Score=135.90 Aligned_cols=216 Identities=25% Similarity=0.348 Sum_probs=158.8
Q ss_pred CCCccccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEE
Q 001031 445 GPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 524 (1183)
Q Consensus 445 ~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLi 524 (1183)
+-++-+||+-..--. +-.|+-..+|+-..|-|.++-+.. .+. .-+.+||.|||| ....|||||.|||--|.++=
T Consensus 146 ~~ekpdvsy~diggl--d~qkqeireavelplt~~~ly~qi-gid-pprgvllygppg--~gktml~kava~~t~a~fir 219 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGL--DVQKQEIREAVELPLTHADLYKQI-GID-PPRGVLLYGPPG--TGKTMLAKAVANHTTAAFIR 219 (408)
T ss_pred CCCCCCccccccccc--hhhHHHHHHHHhccchHHHHHHHh-CCC-CCcceEEeCCCC--CcHHHHHHHHhhccchheee
Confidence 345567777777666 888999999999999999883321 333 347899999999 68999999999998887654
Q ss_pred EecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCc
Q 001031 525 VDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDR 604 (1183)
Q Consensus 525 lDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdr 604 (1183)
+-. +|+
T Consensus 220 vvg----------sef---------------------------------------------------------------- 225 (408)
T KOG0727|consen 220 VVG----------SEF---------------------------------------------------------------- 225 (408)
T ss_pred ecc----------HHH----------------------------------------------------------------
Confidence 321 111
Q ss_pred e-eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcc
Q 001031 605 V-KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGD 683 (1183)
Q Consensus 605 v-k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~ 683 (1183)
| ||.|- |
T Consensus 226 vqkylge------------g------------------------------------------------------------ 233 (408)
T KOG0727|consen 226 VQKYLGE------------G------------------------------------------------------------ 233 (408)
T ss_pred HHHHhcc------------C------------------------------------------------------------
Confidence 1 33331 0
Q ss_pred hhHHHHHHHHHHHHhhccCCCCEEEEEcChhhhhcC--------ChhhHHHHHHHHhcCCC-----CEEEEEeccCCCcc
Q 001031 684 EVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENLPS-----NVVVIGSHTQLDSR 750 (1183)
Q Consensus 684 ~~~k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~--------~~~~~~~i~~~L~~L~g-----~vivIgs~~~~d~~ 750 (1183)
-+.+..+|.++.+ +.|.||||++||.+..+ ..+.-..+-+.|..+.| +|-||.|||+.|.
T Consensus 234 ---prmvrdvfrlake---napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt- 306 (408)
T KOG0727|consen 234 ---PRMVRDVFRLAKE---NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT- 306 (408)
T ss_pred ---cHHHHHHHHHHhc---cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc-
Confidence 0125667778877 89999999999997662 23444445566666655 9999999996554
Q ss_pred cccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhh
Q 001031 751 KEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVE 828 (1183)
Q Consensus 751 k~k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lp 828 (1183)
+|| |||| |++|.+||+||
T Consensus 307 -----------------------------ldp-------------------------------allrpgrldrkiefplp 326 (408)
T KOG0727|consen 307 -----------------------------LDP-------------------------------ALLRPGRLDRKIEFPLP 326 (408)
T ss_pred -----------------------------cCH-------------------------------hhcCCccccccccCCCC
Confidence 555 9999 99999999999
Q ss_pred hhhhccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhh
Q 001031 829 TLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 881 (1183)
Q Consensus 829 d~~gR~~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~ 881 (1183)
|..-++=++.--| ..-.+ +++||+.+.....-.+||+|.++|.+|-.+|..
T Consensus 327 drrqkrlvf~tit--skm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr 378 (408)
T KOG0727|consen 327 DRRQKRLVFSTIT--SKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVR 378 (408)
T ss_pred chhhhhhhHHhhh--hcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHH
Confidence 9765554444332 22234 789999999888899999999999999999875
No 141
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.6e-12 Score=139.98 Aligned_cols=186 Identities=18% Similarity=0.201 Sum_probs=137.0
Q ss_pred eeeecCCCCCCCCCCCCCCCCCCcccccccccccC----CCcchhHHHHHHHHHHHHhhccCCCCEEEEEcChhhhhc--
Q 001031 645 GVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDS----SLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLT-- 718 (1183)
Q Consensus 645 gV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~----~~~~~~~k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~-- 718 (1183)
||..-.|+..|++|-+..--.| --||. +|..+ ..+-.+.-+.+.+||=++.+ +.|.|||+++||.+=+
T Consensus 183 GvlLygppgtGktLlaraVahh-t~c~f--irvsgselvqk~igegsrmvrelfvmare---hapsiifmdeidsigs~r 256 (404)
T KOG0728|consen 183 GVLLYGPPGTGKTLLARAVAHH-TDCTF--IRVSGSELVQKYIGEGSRMVRELFVMARE---HAPSIIFMDEIDSIGSSR 256 (404)
T ss_pred ceEEecCCCCchhHHHHHHHhh-cceEE--EEechHHHHHHHhhhhHHHHHHHHHHHHh---cCCceEeeeccccccccc
Confidence 5666678899999873222111 12332 22111 12334455679999999999 9999999999998533
Q ss_pred ------CChhhHHHHHHHHhcCCC-----CEEEEEeccCCCcccccCCCCCceeeccCcchhhhccccCCCCcccccccc
Q 001031 719 ------GNNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRS 787 (1183)
Q Consensus 719 ------~~~~~~~~i~~~L~~L~g-----~vivIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~ 787 (1183)
+..+.-...-+.|++|.| ++-||.|||++|- +||
T Consensus 257 ~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridi------------------------------ld~----- 301 (404)
T KOG0728|consen 257 VESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI------------------------------LDP----- 301 (404)
T ss_pred ccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccc------------------------------ccH-----
Confidence 345555555566667765 9999999997554 333
Q ss_pred ccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhhccchhHHHHH-hhhCCCCcccchhhhcccCCCC
Q 001031 788 KETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV-LSRNGLDCVDLESLCIKDQTLT 864 (1183)
Q Consensus 788 ~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IHT~-l~~~~l~~vdL~~LA~~tkgfs 864 (1183)
|||| |.+|.+||+-|++++|.+||+||.+ |. -.-..+|..+|++..|-+
T Consensus 302 --------------------------allrpgridrkiefp~p~e~ar~~ilkihsrkmn--l~rgi~l~kiaekm~gas 353 (404)
T KOG0728|consen 302 --------------------------ALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN--LTRGINLRKIAEKMPGAS 353 (404)
T ss_pred --------------------------hhcCCCcccccccCCCCCHHHHHHHHHHhhhhhc--hhcccCHHHHHHhCCCCc
Confidence 9999 9999999999999999999999987 42 125678999999999999
Q ss_pred HHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhHHHHHhhhhhh
Q 001031 865 TEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSES 914 (1183)
Q Consensus 865 gAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~dF~~al~ei 914 (1183)
|||+.++|++|--||+..+ .+-++..||+.+..++
T Consensus 354 gaevk~vcteagm~alrer---------------rvhvtqedfemav~kv 388 (404)
T KOG0728|consen 354 GAEVKGVCTEAGMYALRER---------------RVHVTQEDFEMAVAKV 388 (404)
T ss_pred cchhhhhhhhhhHHHHHHh---------------hccccHHHHHHHHHHH
Confidence 9999999999999998632 2345667888776554
No 142
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.31 E-value=1.2e-11 Score=148.07 Aligned_cols=193 Identities=23% Similarity=0.280 Sum_probs=144.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------EEEe-
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------INIS- 1016 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pf-------i~I~- 1016 (1183)
..+|+|++|++.+...|...+.. .+-.++.||.||.|+|||++||.+|+.+++.- ..|.
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~-------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALEN-------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHh-------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 46899999999999999998864 33446899999999999999999999997642 1111
Q ss_pred cCccccc-cc---------cchHHHHHHHHHHHh----ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCC
Q 001031 1017 MSSITSK-WF---------GEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1082 (1183)
Q Consensus 1017 ~s~L~s~-~~---------GesE~~Ir~lF~~A~----k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl 1082 (1183)
|-.+... +. ...-..++.+.+.+. +....|++|||+|.| .....|.|+..+..
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML------------S~~afNALLKTLEE- 145 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML------------SKQAFNALLKTLEE- 145 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh------------hHHHHHHHhccccc-
Confidence 1111111 10 112234555555543 334569999999977 24566777766654
Q ss_pred cccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHH
Q 001031 1083 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 1161 (1183)
Q Consensus 1083 ~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L 1161 (1183)
++..|.+|.+|..++.++.++++|+ .++.+...+.++....+..++.++++. .+..+..||+..+| +.+|...|
T Consensus 146 ---PP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalsl 220 (515)
T COG2812 146 ---PPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSL 220 (515)
T ss_pred ---CccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHH
Confidence 4578999999999999999999999 688899999999999999999998877 45557888888887 66788888
Q ss_pred HHHHHHH
Q 001031 1162 CVTAAHC 1168 (1183)
Q Consensus 1162 ~~~Aa~~ 1168 (1183)
.+.|...
T Consensus 221 LDq~i~~ 227 (515)
T COG2812 221 LDQAIAF 227 (515)
T ss_pred HHHHHHc
Confidence 8877765
No 143
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=7.2e-11 Score=142.66 Aligned_cols=188 Identities=21% Similarity=0.236 Sum_probs=133.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-------------- 1010 (1183)
..+|++++|++.+++.|...+.. .+.++.+|||||+|+|||++|+++|+.+.+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~-------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~ 76 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN-------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQ 76 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 46899999999999999988752 223456899999999999999999999742
Q ss_pred ----------cEEEEecCccccccccchHHHHHHHHHHHhc----cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHH
Q 001031 1011 ----------NFINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1183)
Q Consensus 1011 ----------pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k----~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL 1076 (1183)
.++.++...- ..-..++.+...+.. ....|++|||+|.|- ....+.|+
T Consensus 77 C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt------------~~A~NALL 138 (535)
T PRK08451 77 CQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT------------KEAFNALL 138 (535)
T ss_pred HHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHH
Confidence 1222222110 012345555443322 123599999999882 12334455
Q ss_pred HhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcH
Q 001031 1077 VNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1077 ~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg 1155 (1183)
..+... +..+.+|.+|+.+..|.+++++|+ .++.|..++.++....++.++.+.++. .+..+..|+....| +.
T Consensus 139 K~LEEp----p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dl 212 (535)
T PRK08451 139 KTLEEP----PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SL 212 (535)
T ss_pred HHHhhc----CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cH
Confidence 555442 345777777777899999999998 689999999999999999998887654 55668888888876 67
Q ss_pred HHHHHHHHHHHHHh
Q 001031 1156 SDLKNLCVTAAHCP 1169 (1183)
Q Consensus 1156 ~DL~~L~~~Aa~~A 1169 (1183)
+++.++++.|+..+
T Consensus 213 R~alnlLdqai~~~ 226 (535)
T PRK08451 213 RDTLTLLDQAIIYC 226 (535)
T ss_pred HHHHHHHHHHHHhc
Confidence 78888887766543
No 144
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.31 E-value=5.4e-12 Score=144.42 Aligned_cols=127 Identities=13% Similarity=0.064 Sum_probs=91.4
Q ss_pred HHHHHHHHhhcc--CCCCEEEEEcChhhhhcCC--------hhhH-HHHHHHHhcC--------------CCCEEEEEec
Q 001031 690 INELFEVALNES--KSSPLIVFVKDIEKSLTGN--------NDAY-GALKSKLENL--------------PSNVVVIGSH 744 (1183)
Q Consensus 690 ~~~l~evl~s~~--~~~P~Ilf~~Die~~l~~~--------~~~~-~~i~~~L~~L--------------~g~vivIgs~ 744 (1183)
|.++|+.+...+ +.+|.||||+|||..+.+. .++. +.|-..++.+ ...|+||++|
T Consensus 196 IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTT 275 (413)
T PLN00020 196 IRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTG 275 (413)
T ss_pred HHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeC
Confidence 667777776554 5689999999999977632 2221 3333433331 3479999999
Q ss_pred cCCCcccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHH
Q 001031 745 TQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQ 822 (1183)
Q Consensus 745 ~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq 822 (1183)
| .||.+|+ ||+| ||++.
T Consensus 276 N------------------------------rpd~LDp-------------------------------ALlRpGRfDk~ 294 (413)
T PLN00020 276 N------------------------------DFSTLYA-------------------------------PLIRDGRMEKF 294 (413)
T ss_pred C------------------------------CcccCCH-------------------------------hHcCCCCCCce
Confidence 9 6778887 9999 99996
Q ss_pred HhhhhhhhhhccchhHHHHHhhhCCCCcccchhhhcccCC----CCHHHHHHHHhhhhhhHhh
Q 001031 823 LERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQT----LTTEGVEKIVGWALSHHFM 881 (1183)
Q Consensus 823 ~e~~Lpd~~gR~~Il~IHT~l~~~~l~~vdL~~LA~~tkg----fsgAdIe~Lv~~A~s~al~ 881 (1183)
+ .+|+.+.|.+|+++|++. .+++..++..|+....| |.||--+.+...++...+.
T Consensus 295 i--~lPd~e~R~eIL~~~~r~--~~l~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~ 353 (413)
T PLN00020 295 Y--WAPTREDRIGVVHGIFRD--DGVSREDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIA 353 (413)
T ss_pred e--CCCCHHHHHHHHHHHhcc--CCCCHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHH
Confidence 5 489999999999999653 47778889999888766 5666555555555544443
No 145
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.30 E-value=1.6e-10 Score=126.83 Aligned_cols=185 Identities=14% Similarity=0.132 Sum_probs=117.1
Q ss_pred CCCccccc-C-cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001031 945 GVTFDDIG-A-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1183)
Q Consensus 945 ~~tfdDI~-G-le~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~ 1019 (1183)
..+|+++. | ...+...+++.... .....++|+||+|+|||+|++++++++ +..+..+....
T Consensus 18 ~~~fd~f~~~~n~~a~~~l~~~~~~--------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 18 DETFASFYPGDNDSLLAALQNALRQ--------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred cCCccccccCccHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 45788855 3 44555555554321 112479999999999999999999876 34455555433
Q ss_pred cccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCC-EEEEEecCC
Q 001031 1020 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER-VLVLAATNR 1098 (1183)
Q Consensus 1020 L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~-VlVIaTTN~ 1098 (1183)
... ....++..... -.+|+||||+.+.+. +..++.+..+++.++. ..+ -+++++++.
T Consensus 84 ~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~---~~~~~~lf~l~n~~~e---------~g~~~li~ts~~~ 141 (235)
T PRK08084 84 RAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGD---ELWEMAIFDLYNRILE---------SGRTRLLITGDRP 141 (235)
T ss_pred Hhh--------hhHHHHHHhhh--CCEEEEeChhhhcCC---HHHHHHHHHHHHHHHH---------cCCCeEEEeCCCC
Confidence 211 11122222121 258999999987321 2223344444444431 123 344555556
Q ss_pred CCC---CcHHHHhccC--cEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHH
Q 001031 1099 PFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1166 (1183)
Q Consensus 1099 p~~---Ld~aLlrRFd--~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa 1166 (1183)
+.. +.+.+++|+. .++.+..|+.+++.++++......++. ++..++.|+...+| +.+.+..+++...
T Consensus 142 p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~ 214 (235)
T PRK08084 142 PRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLD 214 (235)
T ss_pred hHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 555 5789999985 689999999999999999866665554 66678889998875 5667777776643
No 146
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.30 E-value=1.9e-10 Score=124.78 Aligned_cols=181 Identities=19% Similarity=0.221 Sum_probs=116.7
Q ss_pred CCCccccc--CcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001031 945 GVTFDDIG--ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1183)
Q Consensus 945 ~~tfdDI~--Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~ 1019 (1183)
..+|+++. +.+.+...++++... ......++|+||+|||||+||+++++++ +.+++.+++..
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~~-------------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAAG-------------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHhc-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 36788855 345555666554431 1233579999999999999999999876 67888888766
Q ss_pred cccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCC-EEEEEecCC
Q 001031 1020 ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER-VLVLAATNR 1098 (1183)
Q Consensus 1020 L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~-VlVIaTTN~ 1098 (1183)
+... + .......+|+|||+|.+ +...+..+..+++.+. .... +++++++..
T Consensus 81 ~~~~------------~--~~~~~~~~liiDdi~~l-----~~~~~~~L~~~~~~~~---------~~~~~~vl~~~~~~ 132 (227)
T PRK08903 81 PLLA------------F--DFDPEAELYAVDDVERL-----DDAQQIALFNLFNRVR---------AHGQGALLVAGPAA 132 (227)
T ss_pred hHHH------------H--hhcccCCEEEEeChhhc-----CchHHHHHHHHHHHHH---------HcCCcEEEEeCCCC
Confidence 4321 1 11224579999999977 2222333333333221 1123 344444333
Q ss_pred C--CCCcHHHHhcc--CcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001031 1099 P--FDLDEAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1167 (1183)
Q Consensus 1099 p--~~Ld~aLlrRF--d~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~ 1167 (1183)
+ ..+.+.+.+|| ...+.++.|+.+++..+++.+.....+. ++..++.|+....| +.+++..+++.-..
T Consensus 133 ~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~ 205 (227)
T PRK08903 133 PLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDR 205 (227)
T ss_pred HHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence 3 24568888887 4689999999988999998887765554 55567888886554 67788877776443
No 147
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=1e-10 Score=144.36 Aligned_cols=188 Identities=20% Similarity=0.214 Sum_probs=130.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE----Eec---
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN----ISM--- 1017 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~----I~~--- 1017 (1183)
..+|++++|++.++..|...+.. .+-.+++||+||+|+|||++|+++|+.+++.... -.|
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~-------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALIS-------------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 36899999999999999988763 1223589999999999999999999998663110 000
Q ss_pred -----------Cccc--cccccchHHHHHHHHHHHhcc----CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhc
Q 001031 1018 -----------SSIT--SKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1080 (1183)
Q Consensus 1018 -----------s~L~--s~~~GesE~~Ir~lF~~A~k~----~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ld 1080 (1183)
.++. ..........++.+...+... ...||||||+|.|- ....+.|+..++
T Consensus 79 ~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------------~~a~naLLK~LE 146 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------------TAAFNALLKTLE 146 (620)
T ss_pred HHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC------------HHHHHHHHHHHh
Confidence 0110 001112334677777666432 34699999999882 123455666665
Q ss_pred CCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHH
Q 001031 1081 GLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLK 1159 (1183)
Q Consensus 1081 gl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~ 1159 (1183)
. ....+++|++|+.+..+.+++++|+ ..+.|..++.++....+..++.+.++. .+..+..|+..+.|.- +++.
T Consensus 147 e----Pp~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~l-r~A~ 220 (620)
T PRK14948 147 E----PPPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGL-RDAE 220 (620)
T ss_pred c----CCcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH-HHHH
Confidence 4 2356777777888888999999999 788899999888888888888776543 4455788888888744 4444
Q ss_pred HHHH
Q 001031 1160 NLCV 1163 (1183)
Q Consensus 1160 ~L~~ 1163 (1183)
++++
T Consensus 221 ~lLe 224 (620)
T PRK14948 221 SLLD 224 (620)
T ss_pred HHHH
Confidence 4444
No 148
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=9.7e-11 Score=137.93 Aligned_cols=185 Identities=18% Similarity=0.211 Sum_probs=126.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------------- 1011 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p------------- 1011 (1183)
..+|++|+|++.+++.|+..+.. .+.++.+||+||||+|||++|+++|+.+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~-------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRM-------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHh-------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 46899999999999999887752 2344679999999999999999999999662
Q ss_pred -------------------EEEEecCccccccccchHHHHHHHHHHHhc----cCCeEEEEeCCcccccCCCCcchHHHH
Q 001031 1012 -------------------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAM 1068 (1183)
Q Consensus 1012 -------------------fi~I~~s~L~s~~~GesE~~Ir~lF~~A~k----~~PsILfIDEID~Ll~~r~~~~~~e~l 1068 (1183)
++.++... ......++.+...+.. ....|+||||+|.|. .
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~--------~--- 141 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS--------I--- 141 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC--------H---
Confidence 11111110 0112345554444421 233699999999882 1
Q ss_pred HHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccC-CChhhHHHHH
Q 001031 1069 RKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIA 1147 (1183)
Q Consensus 1069 ~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l-~~didl~~LA 1147 (1183)
...+.|+..++.. +...++|++|+....+.+++.+|+ .++.+..++.++..+.++..+...+. .++..+..|+
T Consensus 142 -~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~ 215 (397)
T PRK14955 142 -AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIG 215 (397)
T ss_pred -HHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 1233445444432 245666666677788888999998 57889999999999899988877665 3566688888
Q ss_pred HHcCCCcHHHHHHHHHHHH
Q 001031 1148 NMADGYSGSDLKNLCVTAA 1166 (1183)
Q Consensus 1148 ~~TeGySg~DL~~L~~~Aa 1166 (1183)
..+.| +.+.+.++++.+.
T Consensus 216 ~~s~g-~lr~a~~~L~kl~ 233 (397)
T PRK14955 216 RKAQG-SMRDAQSILDQVI 233 (397)
T ss_pred HHcCC-CHHHHHHHHHHHH
Confidence 88876 4455555555443
No 149
>PRK06893 DNA replication initiation factor; Validated
Probab=99.28 E-value=2.1e-10 Score=125.36 Aligned_cols=160 Identities=18% Similarity=0.185 Sum_probs=103.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~ 1061 (1183)
..++||||||||||+|++++|+++ +....++...... .....++.... +..+|+||||+.+.+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~~--~~dlLilDDi~~~~~~~-- 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENLE--QQDLVCLDDLQAVIGNE-- 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhcc--cCCEEEEeChhhhcCCh--
Confidence 358999999999999999999986 4455555543211 11112222222 45799999999874321
Q ss_pred cchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCc---HHHHhcc--CcEEEecCCCHHHHHHHHHHHHhhcc
Q 001031 1062 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD---EAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEE 1136 (1183)
Q Consensus 1062 ~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld---~aLlrRF--d~vI~I~lPd~eeR~eILk~iL~k~~ 1136 (1183)
..++.+..+++.+.. .+..++|++++..|..++ +.+.+|+ +.++.++.|+.++|.+|++..+...+
T Consensus 108 -~~~~~l~~l~n~~~~--------~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 108 -EWELAIFDLFNRIKE--------QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred -HHHHHHHHHHHHHHH--------cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 112233333333221 113345555666666554 7888876 46889999999999999998887665
Q ss_pred CC-ChhhHHHHHHHcCCCcHHHHHHHHHHHH
Q 001031 1137 LA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1166 (1183)
Q Consensus 1137 l~-~didl~~LA~~TeGySg~DL~~L~~~Aa 1166 (1183)
+. ++..+..|+++.+| +.+.+..+++...
T Consensus 179 l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~ 208 (229)
T PRK06893 179 IELSDEVANFLLKRLDR-DMHTLFDALDLLD 208 (229)
T ss_pred CCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 54 66678889988875 5566666666543
No 150
>PRK08727 hypothetical protein; Validated
Probab=99.27 E-value=4.6e-10 Score=123.14 Aligned_cols=158 Identities=22% Similarity=0.285 Sum_probs=102.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~ 1061 (1183)
..++|+||+|||||+|++++++++ +..++.++..++.. .+..++.... ...+|+||||+.+.+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCCh--
Confidence 459999999999999999998775 56666666544221 2333333332 34699999999874322
Q ss_pred cchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEec-CCCCCC---cHHHHhcc--CcEEEecCCCHHHHHHHHHHHHhhc
Q 001031 1062 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-NRPFDL---DEAVVRRL--PRRLMVNLPDAPNREKIIRVILAKE 1135 (1183)
Q Consensus 1062 ~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTT-N~p~~L---d~aLlrRF--d~vI~I~lPd~eeR~eILk~iL~k~ 1135 (1183)
..+..+..+++.+.. .+..+|+|+ ..|..+ ++.+++|| ..++.++.|+.+++.++++..+...
T Consensus 110 -~~~~~lf~l~n~~~~----------~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 110 -EDEVALFDFHNRARA----------AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred -HHHHHHHHHHHHHHH----------cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 122333333333321 123345555 455544 68999996 5688999999999999999977665
Q ss_pred cCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHH
Q 001031 1136 ELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1166 (1183)
Q Consensus 1136 ~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa 1166 (1183)
++. ++..+..|+.++.| ..+.+.++++...
T Consensus 179 ~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~ 209 (233)
T PRK08727 179 GLALDEAAIDWLLTHGER-ELAGLVALLDRLD 209 (233)
T ss_pred CCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 553 56668889998875 3344444444433
No 151
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.27 E-value=8.5e-11 Score=140.13 Aligned_cols=168 Identities=18% Similarity=0.273 Sum_probs=110.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1059 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL-----g~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r 1059 (1183)
.+++||||+|+|||+|++++++++ +..++++++.++...+.......-..-|...++..+.+|+|||++.+.+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~ 210 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKT 210 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcH
Confidence 469999999999999999999986 457788887776544322111001112444444468899999999885332
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCC---CcHHHHhccC--cEEEecCCCHHHHHHHHHHHHhh
Q 001031 1060 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAK 1134 (1183)
Q Consensus 1060 ~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRFd--~vI~I~lPd~eeR~eILk~iL~k 1134 (1183)
. .++.+..+++.+... ...+||++...|.. +.+.+++||. .++.+..|+.+.|..|++..+..
T Consensus 211 ~---~q~elf~~~n~l~~~---------~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 211 G---VQTELFHTFNELHDS---------GKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEI 278 (440)
T ss_pred H---HHHHHHHHHHHHHHc---------CCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHh
Confidence 1 122333334333311 23455555556654 4567888883 47889999999999999999876
Q ss_pred ccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHH
Q 001031 1135 EELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1165 (1183)
Q Consensus 1135 ~~l~-~didl~~LA~~TeGySg~DL~~L~~~A 1165 (1183)
.++. ++..+..||....| +.++|..++...
T Consensus 279 ~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l 309 (440)
T PRK14088 279 EHGELPEEVLNFVAENVDD-NLRRLRGAIIKL 309 (440)
T ss_pred cCCCCCHHHHHHHHhcccc-CHHHHHHHHHHH
Confidence 5543 56668888888775 556666655544
No 152
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.26 E-value=6.5e-11 Score=131.97 Aligned_cols=141 Identities=23% Similarity=0.314 Sum_probs=92.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc------cccccccchHHH-HH-------------------HHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITSKWFGEGEKY-VK-------------------AVFSL 1038 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~------L~s~~~GesE~~-Ir-------------------~lF~~ 1038 (1183)
.+|||+||||||||++|+++|+.+|.+++.++|.. +++.+.+..... +. ..+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 47999999999999999999999999999998754 333332211111 11 11222
Q ss_pred HhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcc-----cCCCCEEEEEecCCC-----CCCcHHHHh
Q 001031 1039 ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-----KDKERVLVLAATNRP-----FDLDEAVVR 1108 (1183)
Q Consensus 1039 A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~-----k~~~~VlVIaTTN~p-----~~Ld~aLlr 1108 (1183)
|.+ .+.+|+||||+++ ++..+..+..++++....+.+... ..+.++.||+|+|+. ..+++++++
T Consensus 102 A~~-~g~~lllDEi~r~-----~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~ 175 (262)
T TIGR02640 102 AVR-EGFTLVYDEFTRS-----KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD 175 (262)
T ss_pred HHH-cCCEEEEcchhhC-----CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh
Confidence 333 3479999999986 322233333332221111111110 123478899999975 367899999
Q ss_pred ccCcEEEecCCCHHHHHHHHHHHH
Q 001031 1109 RLPRRLMVNLPDAPNREKIIRVIL 1132 (1183)
Q Consensus 1109 RFd~vI~I~lPd~eeR~eILk~iL 1132 (1183)
|| ..+.++.|+.++-.+|++..+
T Consensus 176 R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 176 RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred hc-EEEECCCCCHHHHHHHHHHhh
Confidence 99 789999999999999998765
No 153
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.25 E-value=3.5e-10 Score=132.21 Aligned_cols=204 Identities=17% Similarity=0.212 Sum_probs=131.9
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCcccc
Q 001031 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS 1022 (1183)
Q Consensus 948 fdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-----g~pfi~I~~s~L~s 1022 (1183)
.+.+.|.++..+.|...+...+. ...+..++|+||||||||++++.+++++ ++.++.++|....+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~----------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALR----------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhC----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 35688999998888887753221 1123579999999999999999999887 57788998864321
Q ss_pred ----------cccc--------chHHHHHHHHHHHhc-cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCc
Q 001031 1023 ----------KWFG--------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1083 (1183)
Q Consensus 1023 ----------~~~G--------esE~~Ir~lF~~A~k-~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~ 1083 (1183)
...+ ..+..+..++..... ..+.||+|||+|.+..... . ..+..++..+....
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~----~----~~l~~l~~~~~~~~ 170 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG----N----DVLYSLLRAHEEYP 170 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC----c----hHHHHHHHhhhccC
Confidence 1111 112333344433332 3467999999999851111 1 23344444443321
Q ss_pred ccCCCCEEEEEecCCC---CCCcHHHHhccC-cEEEecCCCHHHHHHHHHHHHhhc---cCCChhhHHHHHHHcCCCc--
Q 001031 1084 TKDKERVLVLAATNRP---FDLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIANMADGYS-- 1154 (1183)
Q Consensus 1084 ~k~~~~VlVIaTTN~p---~~Ld~aLlrRFd-~vI~I~lPd~eeR~eILk~iL~k~---~l~~didl~~LA~~TeGyS-- 1154 (1183)
..++.+|+++|.. +.+++.+.+||. ..+.++.++.++..+|++..+... ...++..++.+++.+.+.+
T Consensus 171 ---~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 247 (394)
T PRK00411 171 ---GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGD 247 (394)
T ss_pred ---CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCc
Confidence 2368888888765 357788888774 578999999999999999887542 1235555777887774322
Q ss_pred HHHHHHHHHHHHHHhHHH
Q 001031 1155 GSDLKNLCVTAAHCPIRE 1172 (1183)
Q Consensus 1155 g~DL~~L~~~Aa~~Aire 1172 (1183)
.+.+..+|..|+..|..+
T Consensus 248 ~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 248 ARVAIDLLRRAGLIAERE 265 (394)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 345557777777666543
No 154
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=2.8e-10 Score=140.01 Aligned_cols=187 Identities=18% Similarity=0.222 Sum_probs=126.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE----------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN---------- 1014 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~---------- 1014 (1183)
..+|++|+|++.+++.|+..+.. .+-++.+||+||+|+|||++|+.+|+.+.+.-..
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~-------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~ 78 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM-------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVT 78 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccC
Confidence 46899999999999999887752 2344679999999999999999999999763100
Q ss_pred EecC--------------cccccccc---chHHHHHHHHHHHh----ccCCeEEEEeCCcccccCCCCcchHHHHHHHHH
Q 001031 1015 ISMS--------------SITSKWFG---EGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 1073 (1183)
Q Consensus 1015 I~~s--------------~L~s~~~G---esE~~Ir~lF~~A~----k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~ 1073 (1183)
-.|. ++. .+-+ .....|+.+...+. ....-|+||||+|.|. ....+
T Consensus 79 ~~Cg~C~sC~~~~~g~~~n~~-~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt------------~~a~n 145 (620)
T PRK14954 79 EPCGECESCRDFDAGTSLNIS-EFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS------------TAAFN 145 (620)
T ss_pred CCCccCHHHHHHhccCCCCeE-EecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC------------HHHHH
Confidence 0000 000 0001 11234555444332 2234699999999882 11234
Q ss_pred HHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccC-CChhhHHHHHHHcCC
Q 001031 1074 EFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADG 1152 (1183)
Q Consensus 1074 ~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l-~~didl~~LA~~TeG 1152 (1183)
.|+..++.. +..+++|++|+....|.+++.+|+ .++.+..++.++....+..++...++ .++..+..|+.++.|
T Consensus 146 aLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G 220 (620)
T PRK14954 146 AFLKTLEEP----PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG 220 (620)
T ss_pred HHHHHHhCC----CCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 566555542 244666666677788989999998 78999999999999889888887665 356678888888876
Q ss_pred CcHHHHHHHHH
Q 001031 1153 YSGSDLKNLCV 1163 (1183)
Q Consensus 1153 ySg~DL~~L~~ 1163 (1183)
. .+++.++++
T Consensus 221 d-lr~al~eLe 230 (620)
T PRK14954 221 S-MRDAQSILD 230 (620)
T ss_pred C-HHHHHHHHH
Confidence 3 344444443
No 155
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=2.6e-10 Score=140.45 Aligned_cols=183 Identities=22% Similarity=0.279 Sum_probs=126.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF------------ 1012 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pf------------ 1012 (1183)
..+|++|+|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+++..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~-------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAE-------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh-------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 46899999999999999887752 22345689999999999999999999986422
Q ss_pred -------------EEEecCccccccccchHHHHHHHHHHHhc----cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHH
Q 001031 1013 -------------INISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1075 (1183)
Q Consensus 1013 -------------i~I~~s~L~s~~~GesE~~Ir~lF~~A~k----~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~L 1075 (1183)
+.++... ......++.+...+.. ....||||||+|.|- ....+.|
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------~~a~naL 140 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------TAAFNAL 140 (585)
T ss_pred HHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------HHHHHHH
Confidence 1122110 0112234444333322 234699999999882 1234455
Q ss_pred HHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCc
Q 001031 1076 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1154 (1183)
Q Consensus 1076 L~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGyS 1154 (1183)
+..++.. ...++||++++..+.+.+.+++|+ .++.|..++..+...++..++.+.++. ++..+..|+..+.| +
T Consensus 141 Lk~LEep----p~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-d 214 (585)
T PRK14950 141 LKTLEEP----PPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-S 214 (585)
T ss_pred HHHHhcC----CCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 5555542 245677777777788888999998 578899999999999999888876653 45557788888876 5
Q ss_pred HHHHHHHHHH
Q 001031 1155 GSDLKNLCVT 1164 (1183)
Q Consensus 1155 g~DL~~L~~~ 1164 (1183)
.+++.++++.
T Consensus 215 lr~al~~Lek 224 (585)
T PRK14950 215 MRDAENLLQQ 224 (585)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 156
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.23 E-value=3.1e-11 Score=131.09 Aligned_cols=127 Identities=21% Similarity=0.348 Sum_probs=96.1
Q ss_pred HHHHHHHHHhhccCCCCEEEEEcChhhhhcC------C---hhhHHHHHHHHhcC--CCCEEEEEeccCCCcccccCCCC
Q 001031 689 AINELFEVALNESKSSPLIVFVKDIEKSLTG------N---NDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPG 757 (1183)
Q Consensus 689 ~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~------~---~~~~~~i~~~L~~L--~g~vivIgs~~~~d~~k~k~~~~ 757 (1183)
.|.+||+-+.. ..|.|+||+++|-+... + .++.+.+-..|+.+ ...|+-|||||
T Consensus 198 ~Ihely~rA~~---~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN------------ 262 (368)
T COG1223 198 RIHELYERARK---AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATN------------ 262 (368)
T ss_pred HHHHHHHHHHh---cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecC------------
Confidence 48899999877 99999999999996541 1 23333333333433 23899999999
Q ss_pred CceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHHHHHHHHhhhhhhhhhccchh
Q 001031 758 GLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNII 837 (1183)
Q Consensus 758 ~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~Il 837 (1183)
.|+-+|+ |.+.||+.++||.||+.+.|..|+
T Consensus 263 ------------------~p~~LD~-------------------------------aiRsRFEeEIEF~LP~~eEr~~il 293 (368)
T COG1223 263 ------------------RPELLDP-------------------------------AIRSRFEEEIEFKLPNDEERLEIL 293 (368)
T ss_pred ------------------ChhhcCH-------------------------------HHHhhhhheeeeeCCChHHHHHHH
Confidence 5566665 888899999999999999888888
Q ss_pred HHHHHhhhCCC-CcccchhhhcccCCCCHHHHHH-HHhhhhhhHhh
Q 001031 838 SIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEK-IVGWALSHHFM 881 (1183)
Q Consensus 838 ~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~-Lv~~A~s~al~ 881 (1183)
.-- ...-++ -+.+++.|+.+|+|++|-||.. ++..|..-|+.
T Consensus 294 e~y--~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ 337 (368)
T COG1223 294 EYY--AKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIA 337 (368)
T ss_pred HHH--HHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Confidence 765 444455 6778999999999999999976 55666555553
No 157
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.23 E-value=2.3e-10 Score=139.44 Aligned_cols=167 Identities=20% Similarity=0.299 Sum_probs=113.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1059 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL-----g~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r 1059 (1183)
+.++|||++|+|||+|+++|++++ +..++++++.++...+...........|...++ ...+|+||||+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 359999999999999999999986 567888988877655443222212223443333 46899999999885322
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCC-C---CCCcHHHHhcc--CcEEEecCCCHHHHHHHHHHHHh
Q 001031 1060 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-P---FDLDEAVVRRL--PRRLMVNLPDAPNREKIIRVILA 1133 (1183)
Q Consensus 1060 ~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~-p---~~Ld~aLlrRF--d~vI~I~lPd~eeR~eILk~iL~ 1133 (1183)
..++.+..+++.+... .+-+|| |+|. + ..+++.|++|| ..++.|..|+.+.|.+||+..+.
T Consensus 394 ---~tqeeLF~l~N~l~e~---------gk~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 394 ---STQEEFFHTFNTLHNA---------NKQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred ---HHHHHHHHHHHHHHhc---------CCCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 2234445555555421 223444 5543 3 35778999998 45778999999999999999988
Q ss_pred hccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHH
Q 001031 1134 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1166 (1183)
Q Consensus 1134 k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa 1166 (1183)
...+. ++..++.|+....+ +.++|..++....
T Consensus 461 ~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~ 493 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRISR-NIRELEGALIRVT 493 (617)
T ss_pred hcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 77665 55667888887764 4566666655443
No 158
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.22 E-value=5.9e-10 Score=125.97 Aligned_cols=185 Identities=22% Similarity=0.274 Sum_probs=123.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 1019 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg-----~pfi~I~~s~ 1019 (1183)
..+|+++.|.+.+++.+..++.. + ...++||+||||+|||++++++++++. .+++.+++++
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~----------~----~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~ 78 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKE----------K----NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD 78 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhC----------C----CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc
Confidence 36899999999999999887752 1 113699999999999999999999872 3455555443
Q ss_pred cccccccchHHHHHHH-HHHHhc-----cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEE
Q 001031 1020 ITSKWFGEGEKYVKAV-FSLASK-----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1183)
Q Consensus 1020 L~s~~~GesE~~Ir~l-F~~A~k-----~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVI 1093 (1183)
... ...++.. ...+.. ..+.+|+|||+|.+. ... .+.+...++... ....+|
T Consensus 79 ~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~-----~~~-------~~~L~~~le~~~----~~~~lI 136 (319)
T PRK00440 79 ERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT-----SDA-------QQALRRTMEMYS----QNTRFI 136 (319)
T ss_pred ccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC-----HHH-------HHHHHHHHhcCC----CCCeEE
Confidence 211 1112222 122221 235699999999882 111 122333333322 335666
Q ss_pred EecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001031 1094 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1167 (1183)
Q Consensus 1094 aTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~ 1167 (1183)
.++|....+.+.+.+|+ .++.++.++.++...+++.++.+.++. .+..+..|+..+.|.. +.+.+.++.++.
T Consensus 137 l~~~~~~~l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~-r~~~~~l~~~~~ 209 (319)
T PRK00440 137 LSCNYSSKIIDPIQSRC-AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDM-RKAINALQAAAA 209 (319)
T ss_pred EEeCCccccchhHHHHh-heeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHHHHHHHH
Confidence 67777788888899998 578999999999999999999887653 5667888988887644 444444444443
No 159
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.22 E-value=6.3e-10 Score=121.13 Aligned_cols=170 Identities=19% Similarity=0.305 Sum_probs=106.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRR 1059 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL-----g~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r 1059 (1183)
..++||||+|+|||+|.+++++++ +..++++++.++...+.......-..-|....+ ...+|+||+|+.+.++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~-~~DlL~iDDi~~l~~~- 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR-SADLLIIDDIQFLAGK- 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC-TSSEEEEETGGGGTTH-
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh-cCCEEEEecchhhcCc-
Confidence 359999999999999999999875 567888887776544322111110112322233 4579999999998421
Q ss_pred CCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC---CCcHHHHhccC--cEEEecCCCHHHHHHHHHHHHhh
Q 001031 1060 ENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAK 1134 (1183)
Q Consensus 1060 ~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRFd--~vI~I~lPd~eeR~eILk~iL~k 1134 (1183)
+..++.+..+++.+... .+.+||++...|. .+++.+.+||. .++.+..|+.+.|.+|++.....
T Consensus 113 --~~~q~~lf~l~n~~~~~---------~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~ 181 (219)
T PF00308_consen 113 --QRTQEELFHLFNRLIES---------GKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKE 181 (219)
T ss_dssp --HHHHHHHHHHHHHHHHT---------TSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHhh---------CCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHH
Confidence 12244555555554422 3445555555554 35688999874 48899999999999999999988
Q ss_pred ccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001031 1135 EELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHC 1168 (1183)
Q Consensus 1135 ~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~~ 1168 (1183)
.++. ++..++.|+.... .+.++|..+++.-...
T Consensus 182 ~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 182 RGIELPEEVIEYLARRFR-RDVRELEGALNRLDAY 215 (219)
T ss_dssp TT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHH
Confidence 7665 5555777888775 3677887777665443
No 160
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.22 E-value=3e-11 Score=145.27 Aligned_cols=126 Identities=20% Similarity=0.276 Sum_probs=90.5
Q ss_pred HHHHHHHHHhhcc-CCCCEEEEEcChhhhhcC-----ChhhH----HHHHHHHhcCC--CCEEEEEeccCCCcccccCCC
Q 001031 689 AINELFEVALNES-KSSPLIVFVKDIEKSLTG-----NNDAY----GALKSKLENLP--SNVVVIGSHTQLDSRKEKSHP 756 (1183)
Q Consensus 689 ~~~~l~evl~s~~-~~~P~Ilf~~Die~~l~~-----~~~~~----~~i~~~L~~L~--g~vivIgs~~~~d~~k~k~~~ 756 (1183)
.+..+|+.+...+ ..+|.||||+|+|.++.. +.+.- +.|-..|+.+. ++|+|||+||
T Consensus 273 ~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN----------- 341 (512)
T TIGR03689 273 QIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASN----------- 341 (512)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccC-----------
Confidence 4666777776543 347999999999998752 12222 23333344443 5899999999
Q ss_pred CCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhhcc
Q 001031 757 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQS 834 (1183)
Q Consensus 757 ~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~ 834 (1183)
.||.+|+ |++| ||++++++++|+.+.|.
T Consensus 342 -------------------~~d~LDp-------------------------------ALlRpGRfD~~I~~~~Pd~e~r~ 371 (512)
T TIGR03689 342 -------------------REDMIDP-------------------------------AILRPGRLDVKIRIERPDAEAAA 371 (512)
T ss_pred -------------------ChhhCCH-------------------------------hhcCccccceEEEeCCCCHHHHH
Confidence 5566776 9999 99999999999999999
Q ss_pred chhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhh
Q 001031 835 NIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 881 (1183)
Q Consensus 835 ~Il~IHT~l~~~~l~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~ 881 (1183)
+|++.|..- ..++ +.+ ...+.|+.++++.++|..+....+.
T Consensus 372 ~Il~~~l~~-~l~l-~~~----l~~~~g~~~a~~~al~~~av~~~~a 412 (512)
T TIGR03689 372 DIFSKYLTD-SLPL-DAD----LAEFDGDREATAAALIQRAVDHLYA 412 (512)
T ss_pred HHHHHHhhc-cCCc-hHH----HHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 999998421 1122 222 2346899999999999999766654
No 161
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.19 E-value=3.6e-10 Score=110.15 Aligned_cols=124 Identities=40% Similarity=0.584 Sum_probs=80.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHHH---HHHHHHHHhccCCeEEEEeCCccccc
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKY---VKAVFSLASKIAPSVVFVDEVDSMLG 1057 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~~GesE~~---Ir~lF~~A~k~~PsILfIDEID~Ll~ 1057 (1183)
..+++|+||||+|||++++.+++.+ +.+++.+++.............. ....+..+....+.+|+|||++.+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~- 97 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS- 97 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh-
Confidence 3579999999999999999999998 88999998877554332211111 1222334455578999999999761
Q ss_pred CCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC--CCcHHHHhccCcEEEec
Q 001031 1058 RRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDEAVVRRLPRRLMVN 1117 (1183)
Q Consensus 1058 ~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~--~Ld~aLlrRFd~vI~I~ 1117 (1183)
......+...+....... .....+.+|++++... .++..+.+||+.++.++
T Consensus 98 -------~~~~~~~~~~i~~~~~~~--~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 98 -------RGAQNALLRVLETLNDLR--IDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred -------HHHHHHHHHHHHhcCcee--ccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 111112222222111111 1235688899998776 78889999998666654
No 162
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.19 E-value=5.2e-10 Score=138.38 Aligned_cols=201 Identities=19% Similarity=0.269 Sum_probs=122.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEE
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFIN 1014 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~pfi~ 1014 (1183)
..+|++++|++.....+.+.+.. . .+.+++|+||||||||++|+++++.. +.+|+.
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~-------------~-~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS-------------P-FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc-------------C-CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 46889999999988887665531 1 12479999999999999999998665 357899
Q ss_pred EecCccc-------cccccchHHH----HHHHHHH----------HhccCCeEEEEeCCcccccCCCCcchHHHHHHHHH
Q 001031 1015 ISMSSIT-------SKWFGEGEKY----VKAVFSL----------ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 1073 (1183)
Q Consensus 1015 I~~s~L~-------s~~~GesE~~----Ir~lF~~----------A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~ 1073 (1183)
+++..+. ..+++..... .+..+.. ......++|||||++.| +...+..+..++.
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----d~~~Q~~Ll~~Le 290 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----DPLLQNKLLKVLE 290 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----CHHHHHHHHHHHh
Confidence 9887642 1122211100 0111110 11224579999999988 3333333333333
Q ss_pred HHHHhhcC----------------C-cccCCCCEEEEE-ecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhc
Q 001031 1074 EFMVNWDG----------------L-RTKDKERVLVLA-ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE 1135 (1183)
Q Consensus 1074 ~LL~~Ldg----------------l-~~k~~~~VlVIa-TTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~ 1135 (1183)
.-...+.. + ....+..+++|+ ||+.+..+++++++||. .+.++.++.++...|++.++.+.
T Consensus 291 ~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~ 369 (615)
T TIGR02903 291 DKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKI 369 (615)
T ss_pred hCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHc
Confidence 21100000 0 001123455555 45678889999999994 67888899999999999998875
Q ss_pred cC-CChhhHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001031 1136 EL-ASDVDLEGIANMADGYSGSDLKNLCVTAAH 1167 (1183)
Q Consensus 1136 ~l-~~didl~~LA~~TeGySg~DL~~L~~~Aa~ 1167 (1183)
.+ ..+..++.|+..+. .++...+++..+..
T Consensus 370 ~v~ls~eal~~L~~ys~--~gRraln~L~~~~~ 400 (615)
T TIGR02903 370 NVHLAAGVEELIARYTI--EGRKAVNILADVYG 400 (615)
T ss_pred CCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHH
Confidence 43 24455666776653 33444344444433
No 163
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=5.8e-11 Score=131.84 Aligned_cols=146 Identities=16% Similarity=0.195 Sum_probs=113.5
Q ss_pred HHHHHHHHHhhccCCCCEEEEEcChhhhhc--------CChhhHHHHHHHHhcCC-----CCEEEEEeccCCCcccccCC
Q 001031 689 AINELFEVALNESKSSPLIVFVKDIEKSLT--------GNNDAYGALKSKLENLP-----SNVVVIGSHTQLDSRKEKSH 755 (1183)
Q Consensus 689 ~~~~l~evl~s~~~~~P~Ilf~~Die~~l~--------~~~~~~~~i~~~L~~L~-----g~vivIgs~~~~d~~k~k~~ 755 (1183)
+|.+-|.-+.. .+|.|||++|||-... .++++-..+.+.|+.+. ++|-+|.|+|
T Consensus 213 lIRemf~yA~~---~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatN---------- 279 (388)
T KOG0651|consen 213 LIRDMFRYARE---VIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATN---------- 279 (388)
T ss_pred HHHHHHHHHhh---hCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecC----------
Confidence 35555655555 8999999999999655 35666677777777774 4999999999
Q ss_pred CCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhhc
Q 001031 756 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQ 833 (1183)
Q Consensus 756 ~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR 833 (1183)
.||.+|| ||+| |.|+.+++|||++.+|
T Consensus 280 --------------------rpdtLdp-------------------------------aLlRpGRldrk~~iPlpne~~r 308 (388)
T KOG0651|consen 280 --------------------RPDTLDP-------------------------------ALLRPGRLDRKVEIPLPNEQAR 308 (388)
T ss_pred --------------------Cccccch-------------------------------hhcCCccccceeccCCcchhhc
Confidence 6777887 9999 9999999999999999
Q ss_pred cchhHHHHH-hhhCC-CCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhHHHHHhhh
Q 001031 834 SNIISIRSV-LSRNG-LDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQ 911 (1183)
Q Consensus 834 ~~Il~IHT~-l~~~~-l~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~dF~~al 911 (1183)
..|++||.. +...| +. -+.+.....+|+|+|++..|++|--+++.. +...+...+|+.+.
T Consensus 309 ~~I~Kih~~~i~~~Geid---~eaivK~~d~f~gad~rn~~tEag~Fa~~~---------------~~~~vl~Ed~~k~v 370 (388)
T KOG0651|consen 309 LGILKIHVQPIDFHGEID---DEAILKLVDGFNGADLRNVCTEAGMFAIPE---------------ERDEVLHEDFMKLV 370 (388)
T ss_pred eeeEeecccccccccccc---HHHHHHHHhccChHHHhhhcccccccccch---------------hhHHHhHHHHHHHH
Confidence 999999987 55555 34 345666678999999999999998777541 22244567888776
Q ss_pred hhhhh
Q 001031 912 SESKS 916 (1183)
Q Consensus 912 ~eikp 916 (1183)
.+...
T Consensus 371 rk~~~ 375 (388)
T KOG0651|consen 371 RKQAD 375 (388)
T ss_pred HHHHH
Confidence 66544
No 164
>PHA02244 ATPase-like protein
Probab=99.18 E-value=2.5e-10 Score=131.63 Aligned_cols=130 Identities=19% Similarity=0.261 Sum_probs=83.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc---cchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF---GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~---GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~ 1061 (1183)
.+|||+||||||||+||+++|+.++.+|+.++.-.-..... .........-|..|.+ ..++||||||+.+ .
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a-----~ 193 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFK-KGGLFFIDEIDAS-----I 193 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhh-cCCEEEEeCcCcC-----C
Confidence 46999999999999999999999999999987421000111 1111122233444443 4689999999976 2
Q ss_pred cchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCC-----------CCCcHHHHhccCcEEEecCCCH
Q 001031 1062 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-----------FDLDEAVVRRLPRRLMVNLPDA 1121 (1183)
Q Consensus 1062 ~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p-----------~~Ld~aLlrRFd~vI~I~lPd~ 1121 (1183)
+.....+..++......+.+-....+.++.+|+|+|.. ..|++++++|| ..+.++.|+.
T Consensus 194 p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~ 263 (383)
T PHA02244 194 PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEK 263 (383)
T ss_pred HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcH
Confidence 22233333333221111112122235789999999973 57899999999 6899999983
No 165
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.18 E-value=4e-10 Score=134.44 Aligned_cols=167 Identities=15% Similarity=0.248 Sum_probs=110.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~ 1061 (1183)
++++||||+|+|||+|++++++++ +..++++++..+...+.......-...|...++ ...||+||||+.+.++.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k~-- 218 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGKG-- 218 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCCh--
Confidence 579999999999999999999886 688888887665443221111111123444333 46799999999874322
Q ss_pred cchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCC---CCCcHHHHhccC--cEEEecCCCHHHHHHHHHHHHhhcc
Q 001031 1062 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP---FDLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEE 1136 (1183)
Q Consensus 1062 ~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p---~~Ld~aLlrRFd--~vI~I~lPd~eeR~eILk~iL~k~~ 1136 (1183)
..++.+..+++.+... ...+|++++..| ..+++.+++||. ..+.+..|+.++|..|++..+...+
T Consensus 219 -~~qeelf~l~N~l~~~---------~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~ 288 (445)
T PRK12422 219 -ATQEEFFHTFNSLHTE---------GKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS 288 (445)
T ss_pred -hhHHHHHHHHHHHHHC---------CCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 2234444555544321 234555444444 356789999995 6888999999999999999988766
Q ss_pred CC-ChhhHHHHHHHcCCCcHHHHHHHHHHH
Q 001031 1137 LA-SDVDLEGIANMADGYSGSDLKNLCVTA 1165 (1183)
Q Consensus 1137 l~-~didl~~LA~~TeGySg~DL~~L~~~A 1165 (1183)
+. ++..++.|+....+ ..++|...++..
T Consensus 289 ~~l~~evl~~la~~~~~-dir~L~g~l~~l 317 (445)
T PRK12422 289 IRIEETALDFLIEALSS-NVKSLLHALTLL 317 (445)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 54 55567778887764 445555555544
No 166
>PRK06620 hypothetical protein; Validated
Probab=99.17 E-value=1.2e-09 Score=118.53 Aligned_cols=144 Identities=16% Similarity=0.231 Sum_probs=98.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcch
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~ 1064 (1183)
..++||||||+|||+|++++++..+..++.. ... ....+ + ...+|+|||||.+ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~--~~~-----------~~~~~----~-~~d~lliDdi~~~--------~ 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKD--IFF-----------NEEIL----E-KYNAFIIEDIENW--------Q 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcch--hhh-----------chhHH----h-cCCEEEEeccccc--------h
Confidence 5799999999999999999999887543321 000 01111 1 2369999999965 1
Q ss_pred HHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCC--CcHHHHhccC--cEEEecCCCHHHHHHHHHHHHhhccCC-C
Q 001031 1065 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD--LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-S 1139 (1183)
Q Consensus 1065 ~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~--Ld~aLlrRFd--~vI~I~lPd~eeR~eILk~iL~k~~l~-~ 1139 (1183)
...+..+++.+. +.+..+||+++..|.. + +.+++|+. .++.+..|+.+.+..+++..+...++. +
T Consensus 99 ~~~lf~l~N~~~---------e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~ 168 (214)
T PRK06620 99 EPALLHIFNIIN---------EKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTIS 168 (214)
T ss_pred HHHHHHHHHHHH---------hcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 233444444443 1244667766654433 5 88999984 379999999999999999988765553 5
Q ss_pred hhhHHHHHHHcCCCcHHHHHHHHHHH
Q 001031 1140 DVDLEGIANMADGYSGSDLKNLCVTA 1165 (1183)
Q Consensus 1140 didl~~LA~~TeGySg~DL~~L~~~A 1165 (1183)
+..++.|+.+..| +.+.+.++++..
T Consensus 169 ~ev~~~L~~~~~~-d~r~l~~~l~~l 193 (214)
T PRK06620 169 RQIIDFLLVNLPR-EYSKIIEILENI 193 (214)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 6678888888865 556666666654
No 167
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.17 E-value=4.3e-10 Score=138.70 Aligned_cols=197 Identities=18% Similarity=0.217 Sum_probs=127.0
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecC
Q 001031 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMS 1018 (1183)
Q Consensus 949 dDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~pfi~I~~s 1018 (1183)
+.|.+.++.++.|..++...+. + ..+...|+|+|+||||||++++.+.+++ .+.+++++|.
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------g--sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------Q--SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------c--CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 5789999999999888864332 1 1232335799999999999999998766 2667889985
Q ss_pred cccccc----------c------c-chHHHHHHHHHHHh--ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhh
Q 001031 1019 SITSKW----------F------G-EGEKYVKAVFSLAS--KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1079 (1183)
Q Consensus 1019 ~L~s~~----------~------G-esE~~Ir~lF~~A~--k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~L 1079 (1183)
.+...+ . | .....+..+|.... .....||+|||||.|... .+..+.. |+...
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----~QDVLYn----LFR~~ 896 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----TQKVLFT----LFDWP 896 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----HHHHHHH----HHHHh
Confidence 432111 0 1 12345566666542 223569999999999532 2222222 22211
Q ss_pred cCCcccCCCCEEEEEecCC---CCCCcHHHHhccCc-EEEecCCCHHHHHHHHHHHHhhc-cCCChhhHHHHHHHcCCC-
Q 001031 1080 DGLRTKDKERVLVLAATNR---PFDLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAKE-ELASDVDLEGIANMADGY- 1153 (1183)
Q Consensus 1080 dgl~~k~~~~VlVIaTTN~---p~~Ld~aLlrRFd~-vI~I~lPd~eeR~eILk~iL~k~-~l~~didl~~LA~~TeGy- 1153 (1183)
. ....++.|||++|. +..|++.+.+||.. .+.|++++.+++.+||+..+... .+.++..+..+|+.....
T Consensus 897 -~---~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~S 972 (1164)
T PTZ00112 897 -T---KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVS 972 (1164)
T ss_pred -h---ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcC
Confidence 1 12367999999986 55677888888864 47889999999999999988753 334566677777744322
Q ss_pred -cHHHHHHHHHHHHH
Q 001031 1154 -SGSDLKNLCVTAAH 1167 (1183)
Q Consensus 1154 -Sg~DL~~L~~~Aa~ 1167 (1183)
..+..-.+|+.|+.
T Consensus 973 GDARKALDILRrAgE 987 (1164)
T PTZ00112 973 GDIRKALQICRKAFE 987 (1164)
T ss_pred CHHHHHHHHHHHHHh
Confidence 22333345555553
No 168
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=9e-10 Score=136.02 Aligned_cols=184 Identities=20% Similarity=0.254 Sum_probs=131.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-------------- 1010 (1183)
..+|++|+|++.+++.|...+.. .+.++.+|||||+|+|||++|+.+|+.+.+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~-------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~ 79 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT-------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE 79 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc-------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch
Confidence 36899999999999999988752 234467999999999999999999998853
Q ss_pred -----------cEEEEecCccccccccchHHHHHHHHHHHhcc----CCeEEEEeCCcccccCCCCcchHHHHHHHHHHH
Q 001031 1011 -----------NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1075 (1183)
Q Consensus 1011 -----------pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~----~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~L 1075 (1183)
+++.+++... .....++.+...+... ...|++|||+|.|. ....+.|
T Consensus 80 sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------~~a~naL 141 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------QAAFNAF 141 (614)
T ss_pred HHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------HHHHHHH
Confidence 2333332210 1123455655555332 23599999999882 1234455
Q ss_pred HHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCc
Q 001031 1076 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1154 (1183)
Q Consensus 1076 L~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGyS 1154 (1183)
+..++.. +..+++|++|+....|.+++++|+ .++.|..++.++...+++.++.+.++. .+..+..|+..+.| +
T Consensus 142 LK~LEep----p~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-d 215 (614)
T PRK14971 142 LKTLEEP----PSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-G 215 (614)
T ss_pred HHHHhCC----CCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 6555542 245677777777789999999998 679999999999999999998887765 44557888888865 5
Q ss_pred HHHHHHHHHHH
Q 001031 1155 GSDLKNLCVTA 1165 (1183)
Q Consensus 1155 g~DL~~L~~~A 1165 (1183)
.+++.++++..
T Consensus 216 lr~al~~Lekl 226 (614)
T PRK14971 216 MRDALSIFDQV 226 (614)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 169
>PRK05642 DNA replication initiation factor; Validated
Probab=99.16 E-value=1.8e-09 Score=118.57 Aligned_cols=162 Identities=19% Similarity=0.237 Sum_probs=107.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~ 1061 (1183)
..++|+||+|+|||+|++++++++ +..+++++..++... ...+..... ...+|+||||+.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~--~~d~LiiDDi~~~~~~--- 112 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLE--QYELVCLDDLDVIAGK--- 112 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhh--hCCEEEEechhhhcCC---
Confidence 579999999999999999999865 567778877665432 112222222 2258999999977322
Q ss_pred cchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCC---CcHHHHhcc--CcEEEecCCCHHHHHHHHHHHHhhcc
Q 001031 1062 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRL--PRRLMVNLPDAPNREKIIRVILAKEE 1136 (1183)
Q Consensus 1062 ~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRF--d~vI~I~lPd~eeR~eILk~iL~k~~ 1136 (1183)
+..++.+..+++.+. ...+.+||+++..+.. +.+.+++|| ..++.+..|+.++|.++++..+...+
T Consensus 113 ~~~~~~Lf~l~n~~~---------~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 113 ADWEEALFHLFNRLR---------DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred hHHHHHHHHHHHHHH---------hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 122334445555432 1244566666655433 368899998 46788899999999999996665544
Q ss_pred C-CChhhHHHHHHHcCCCcHHHHHHHHHHHHHHh
Q 001031 1137 L-ASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1169 (1183)
Q Consensus 1137 l-~~didl~~LA~~TeGySg~DL~~L~~~Aa~~A 1169 (1183)
+ .++..++.|+++.+| +.+.+..+++.-...+
T Consensus 184 ~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~ 216 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR-SMSALFDLLERLDQAS 216 (234)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 4 356668888888874 6667766666554333
No 170
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.16 E-value=1.1e-10 Score=134.20 Aligned_cols=169 Identities=20% Similarity=0.296 Sum_probs=102.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCc--EEEE
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GAN--FINI 1015 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-------g~p--fi~I 1015 (1183)
...|.+|.|++++++.|.-.+.. ....++||+|+||||||++|+++++.+ +++ +..+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~--------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID--------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc--------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 35689999999999988653321 112579999999999999999999998 332 1111
Q ss_pred ec-Ccc-----------------------ccccccch--HHHH-HH--HHH--HHhccCCeEEEEeCCcccccCCCCcch
Q 001031 1016 SM-SSI-----------------------TSKWFGEG--EKYV-KA--VFS--LASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1183)
Q Consensus 1016 ~~-s~L-----------------------~s~~~Ges--E~~I-r~--lF~--~A~k~~PsILfIDEID~Ll~~r~~~~~ 1064 (1183)
.+ .++ ....+|.. +..+ .+ .|. ...+...++||||||+.+ ++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl-----~~~~ 144 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL-----EDHI 144 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC-----CHHH
Confidence 10 000 00012210 0000 00 011 001123379999999987 3223
Q ss_pred HHHHHHHHHHHH--HhhcCCcccCCCCEEEEEecCCCC-CCcHHHHhccCcEEEecCCCH-HHHHHHHHHHH
Q 001031 1065 HEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVIL 1132 (1183)
Q Consensus 1065 ~e~l~~il~~LL--~~Ldgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRFd~vI~I~lPd~-eeR~eILk~iL 1132 (1183)
+..+...+++-. ...+|.....+.++++|+|+|..+ .+.++++.||...+.++.|.. ++|.++++...
T Consensus 145 q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 145 VDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred HHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 333333222211 112343333457899999999754 689999999999999988876 88899988743
No 171
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.15 E-value=8.9e-10 Score=131.77 Aligned_cols=172 Identities=17% Similarity=0.252 Sum_probs=115.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHH---HHHHHHHHHhccCCeEEEEeCCcccc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEK---YVKAVFSLASKIAPSVVFVDEVDSML 1056 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL-----g~pfi~I~~s~L~s~~~GesE~---~Ir~lF~~A~k~~PsILfIDEID~Ll 1056 (1183)
.+++|||++|+|||+|++++++++ +..++++++.++...+...... .+.. |...++ ...+|+||||+.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~-~~~~~~-~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQ-FKNEIC-QNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHH-HHHHhc-cCCEEEEecccccc
Confidence 469999999999999999999965 4677888887766544322111 1111 222222 45799999999873
Q ss_pred cCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC---CCcHHHHhccC--cEEEecCCCHHHHHHHHHHH
Q 001031 1057 GRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVI 1131 (1183)
Q Consensus 1057 ~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRFd--~vI~I~lPd~eeR~eILk~i 1131 (1183)
++ ...++.+..+++.+... .+.+||++...|. .+++.+++||. .++.+..|+.++|.+|++..
T Consensus 220 ~k---~~~~e~lf~l~N~~~~~---------~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 220 YK---EKTNEIFFTIFNNFIEN---------DKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CC---HHHHHHHHHHHHHHHHc---------CCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 22 12344455555554321 2234444334443 45789999984 57889999999999999999
Q ss_pred HhhccC---CChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHH
Q 001031 1132 LAKEEL---ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIR 1171 (1183)
Q Consensus 1132 L~k~~l---~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Air 1171 (1183)
+...++ .++..+..|+..+.| ..+.|..+|..+...+..
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~ 329 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQ 329 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhc
Confidence 987553 456668888888876 678888888877655443
No 172
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.15 E-value=1.6e-10 Score=131.87 Aligned_cols=142 Identities=15% Similarity=0.205 Sum_probs=98.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc--cccchH----------HHHHHHHHHHhccCCeEEEEeCC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--WFGEGE----------KYVKAVFSLASKIAPSVVFVDEV 1052 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~--~~GesE----------~~Ir~lF~~A~k~~PsILfIDEI 1052 (1183)
++|||.||||||||++++.+|..++.+++.+++...+.. .+|... ......+..|.+ .+.+|++|||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechh
Confidence 579999999999999999999999999999987654332 333211 122334555554 4588999999
Q ss_pred cccccCCCCcchHHHHHHHHHH-HHHhhcCC--cccCCCCEEEEEecCCCC------------CCcHHHHhccCcEEEec
Q 001031 1053 DSMLGRRENPGEHEAMRKMKNE-FMVNWDGL--RTKDKERVLVLAATNRPF------------DLDEAVVRRLPRRLMVN 1117 (1183)
Q Consensus 1053 D~Ll~~r~~~~~~e~l~~il~~-LL~~Ldgl--~~k~~~~VlVIaTTN~p~------------~Ld~aLlrRFd~vI~I~ 1117 (1183)
|+. .+..+..+..+++. -...+.+. ....+..++||||+|+.. .|++++++||..++.++
T Consensus 144 n~a-----~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~ 218 (327)
T TIGR01650 144 DAG-----RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLN 218 (327)
T ss_pred hcc-----CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCC
Confidence 976 33334444444331 00011111 112345799999999853 57899999997778899
Q ss_pred CCCHHHHHHHHHHHH
Q 001031 1118 LPDAPNREKIIRVIL 1132 (1183)
Q Consensus 1118 lPd~eeR~eILk~iL 1132 (1183)
.|+.++-.+|+....
T Consensus 219 Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 219 YLEHDNEAAIVLAKA 233 (327)
T ss_pred CCCHHHHHHHHHhhc
Confidence 999999999987654
No 173
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.11 E-value=6.4e-10 Score=128.48 Aligned_cols=168 Identities=18% Similarity=0.231 Sum_probs=105.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-------CcEEEEec
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------ANFINISM 1017 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg-------~pfi~I~~ 1017 (1183)
...|.+|+|++++|..|.-.+.. ....+|||.|++|||||++|++++..+. .||. .+.
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~--------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p 77 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID--------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHP 77 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC--------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCC
Confidence 35789999999999998765542 2235899999999999999999987762 2332 110
Q ss_pred C--c-----cccc---------------c----ccchHHH------HHHHHHHHh---------ccCCeEEEEeCCcccc
Q 001031 1018 S--S-----ITSK---------------W----FGEGEKY------VKAVFSLAS---------KIAPSVVFVDEVDSML 1056 (1183)
Q Consensus 1018 s--~-----L~s~---------------~----~GesE~~------Ir~lF~~A~---------k~~PsILfIDEID~Ll 1056 (1183)
. + +... + .+.++.. +...|.... +...++||||||+.+
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL- 156 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL- 156 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC-
Confidence 0 0 0000 0 0111111 111222111 223479999999988
Q ss_pred cCCCCcchHHHHHHHHHHHHHhh--cCCcccCCCCEEEEEecCCCC-CCcHHHHhccCcEEEecCCC-HHHHHHHHHHHH
Q 001031 1057 GRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPD-APNREKIIRVIL 1132 (1183)
Q Consensus 1057 ~~r~~~~~~e~l~~il~~LL~~L--dgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRFd~vI~I~lPd-~eeR~eILk~iL 1132 (1183)
++..+..+...+.+-...+ +|....-+.++++|+|.|..+ .|.++++.||...+.+..|+ .+.+.+|++...
T Consensus 157 ----~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 157 ----DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred ----CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhh
Confidence 3333333322222211112 343333457899999988765 69999999999999999997 589989888753
No 174
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=3.1e-09 Score=123.32 Aligned_cols=187 Identities=18% Similarity=0.151 Sum_probs=121.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEE-e
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINI-S 1016 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-------pfi~I-~ 1016 (1183)
...|++++|++.+.+.|...+.. .+.++.+||+||+|+|||++|+.+|+.+.+ +.... .
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~-------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE-------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc-------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 35788999999999999987753 234567999999999999999999999855 11100 0
Q ss_pred ---c-----------Cccc--cccccc---------hHHHHHHHHHHHh----ccCCeEEEEeCCcccccCCCCcchHHH
Q 001031 1017 ---M-----------SSIT--SKWFGE---------GEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEA 1067 (1183)
Q Consensus 1017 ---~-----------s~L~--s~~~Ge---------sE~~Ir~lF~~A~----k~~PsILfIDEID~Ll~~r~~~~~~e~ 1067 (1183)
| +++. ....+. ....++.+-.... .....|++|||+|.| +
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-----~------ 154 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-----N------ 154 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----C------
Confidence 1 1111 000000 1123333333222 234569999999988 2
Q ss_pred HHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHH
Q 001031 1068 MRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIA 1147 (1183)
Q Consensus 1068 l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA 1147 (1183)
....+.++..++.. +.+.++|..|+.+..+.+++++|+ ..+.++.|+.++..++++....... .++..+..++
T Consensus 155 -~~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~ 227 (351)
T PRK09112 155 -RNAANAILKTLEEP----PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALL 227 (351)
T ss_pred -HHHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHH
Confidence 22334456665542 245566666777888899999999 7999999999999999987543333 2344567788
Q ss_pred HHcCCCcHHHHHHHHH
Q 001031 1148 NMADGYSGSDLKNLCV 1163 (1183)
Q Consensus 1148 ~~TeGySg~DL~~L~~ 1163 (1183)
..+.|.....+ ++..
T Consensus 228 ~~s~G~pr~Al-~ll~ 242 (351)
T PRK09112 228 QRSKGSVRKAL-LLLN 242 (351)
T ss_pred HHcCCCHHHHH-HHHh
Confidence 88877555444 4443
No 175
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=3.3e-09 Score=121.12 Aligned_cols=172 Identities=17% Similarity=0.286 Sum_probs=116.4
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------EEEEecC
Q 001031 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN--------FINISMS 1018 (1183)
Q Consensus 947 tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p--------fi~I~~s 1018 (1183)
+|++|.|++.+++.|...+.. .+.++.+||+||+|+|||++|+++|+.+.+. ++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 689999999999999887752 2344678999999999999999999987432 2223211
Q ss_pred ccccccccchHHHHHHHHHHHh----ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEE
Q 001031 1019 SITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1094 (1183)
Q Consensus 1019 ~L~s~~~GesE~~Ir~lF~~A~----k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIa 1094 (1183)
.+... .-..++.+...+. ....-|++||++|.|- ....+.|+..++. ++..+++|.
T Consensus 69 --~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~------------~~a~naLLK~LEe----pp~~t~~il 128 (313)
T PRK05564 69 --NKKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT------------EQAQNAFLKTIEE----PPKGVFIIL 128 (313)
T ss_pred --cCCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcC------------HHHHHHHHHHhcC----CCCCeEEEE
Confidence 11111 1223555554333 2334699999999881 2234556666654 235567777
Q ss_pred ecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcH
Q 001031 1095 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1095 TTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg 1155 (1183)
+|+.++.|.+++++|+ ..+.+..|+.++...++...+.. .++..+..++..+.|-.+
T Consensus 129 ~~~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 129 LCENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYND---IKEEEKKSAIAFSDGIPG 185 (313)
T ss_pred EeCChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhcC---CCHHHHHHHHHHcCCCHH
Confidence 7788899999999999 68999999998887777654431 234446667777766444
No 176
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.09 E-value=1e-09 Score=117.96 Aligned_cols=185 Identities=24% Similarity=0.336 Sum_probs=127.0
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CC----cEEEEecCcc
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GA----NFINISMSSI 1020 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-g~----pfi~I~~s~L 1020 (1183)
..+.||+|.++..+.|.-... .+ .- .+++|.||||+|||+-+.++|+++ |- -+.+++.++-
T Consensus 24 ~~l~dIVGNe~tv~rl~via~----------~g--nm--P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAK----------EG--NM--PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHH----------cC--CC--CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 457899999999998876553 12 22 489999999999999999999997 42 3566776663
Q ss_pred ccccccchHHHHHHHHHHHh-ccCC---eEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEec
Q 001031 1021 TSKWFGEGEKYVKAVFSLAS-KIAP---SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1096 (1183)
Q Consensus 1021 ~s~~~GesE~~Ir~lF~~A~-k~~P---sILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTT 1096 (1183)
.+- ......|+ .|..-+ ..+| .||++||+|++ ..+.++++++++.-.. ....+..+|
T Consensus 90 RGI--DvVRn~IK-~FAQ~kv~lp~grhKIiILDEADSM-----T~gAQQAlRRtMEiyS-----------~ttRFalaC 150 (333)
T KOG0991|consen 90 RGI--DVVRNKIK-MFAQKKVTLPPGRHKIIILDEADSM-----TAGAQQALRRTMEIYS-----------NTTRFALAC 150 (333)
T ss_pred ccc--HHHHHHHH-HHHHhhccCCCCceeEEEeeccchh-----hhHHHHHHHHHHHHHc-----------ccchhhhhh
Confidence 321 11122232 333322 2333 49999999998 4567888888776432 346788899
Q ss_pred CCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHH
Q 001031 1097 NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVT 1164 (1183)
Q Consensus 1097 N~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~ 1164 (1183)
|..+.+-+.+.+|+ -.+.+...+..+...-+..+.+.+++. .+..++.+....+|-....|.+|...
T Consensus 151 N~s~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst 218 (333)
T KOG0991|consen 151 NQSEKIIEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQST 218 (333)
T ss_pred cchhhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHH
Confidence 99999999999988 456666677777666666666665554 44457777777777666666666443
No 177
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.08 E-value=3.5e-10 Score=100.27 Aligned_cols=67 Identities=31% Similarity=0.486 Sum_probs=58.8
Q ss_pred eEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecCCCceEEeeCCCEEEEc
Q 001031 154 FTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELVFS 224 (1183)
Q Consensus 154 ~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~~~k~~~~~L~~gDev~f~ 224 (1183)
|+|||+..||+.|+++.+|..||.|...+. ..++|++. +.||| +|||+.+.++..+.|..||+|.|+
T Consensus 1 ~~iGR~~~~di~l~~~~iSr~Ha~i~~~~~---~~~~i~d~~s~ngt-~vng~~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPDCDIVLPDPSISRRHARISFDDD---GQFYIEDLGSTNGT-FVNGQRLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTTSSEEETSTTSSTTSEEEEEETT---EEEEEEESSSSS-E-EETTEEESSTSEEEE-TTEEEEET
T ss_pred CEEcCCCCCCEEECCHheeeeeeEEEEece---eeEEEEeCCCCCcE-EECCEEcCCCCEEECCCCCEEEcC
Confidence 799999999999999999999999997643 33899997 58888 799999999999999999999985
No 178
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=1.5e-10 Score=132.55 Aligned_cols=113 Identities=23% Similarity=0.360 Sum_probs=99.4
Q ss_pred CccceeccccCCCCceeeecceeEEccCCccceeecCCCCCccceEEEEe----------e-cCCcceEEEEEecCCceE
Q 001031 132 IPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRI----------E-NGGPSGALLEITGGKGEV 200 (1183)
Q Consensus 132 ~pW~rL~s~~~~~p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~----------~-~~g~~~a~le~~~~~G~v 200 (1183)
.||+||+-..-..+++.+.+.+|||||+..||+.++.+.+|+.|-++... . .+.+..+||+|+++|||
T Consensus 44 ~~r~r~~~v~~~~~~~d~~nd~f~fGR~~~~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~DhS~nGT- 122 (475)
T KOG0615|consen 44 KPRARLVGVRRGIKSIDLANDEFTFGRGDSCDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDHSRNGT- 122 (475)
T ss_pred cchhhhcceeeccccceeccceEEecCCCcccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEecccCcc-
Confidence 48999999999999999999999999999999999999999888754432 2 34456899999999999
Q ss_pred EEcCeecCCCceEEeeCCCEEEEccCCCeeEEeeecCcccCCCCC
Q 001031 201 EVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDTLAAPG 245 (1183)
Q Consensus 201 ~vNg~~~~k~~~~~L~~gDev~f~~~~~~ayifq~l~~~~~~~~~ 245 (1183)
+||-+.++||....|+|||||.++.+.+++++|.+++.+....+.
T Consensus 123 ~VN~e~i~k~~~r~lkN~dei~is~p~~~~~v~~~~s~d~~~~~p 167 (475)
T KOG0615|consen 123 FVNDEMIGKGLSRILKNGDEISISIPALKIFVFEDLSRDSSKVPP 167 (475)
T ss_pred cccHhHhhccccccccCCCEEEeccchhheeeeecccchhccCcc
Confidence 699999999999999999999999999999999998666544443
No 179
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.05 E-value=7.1e-10 Score=131.45 Aligned_cols=201 Identities=26% Similarity=0.305 Sum_probs=132.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc-
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI- 1020 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L- 1020 (1183)
..+|++|+|....+..+.+.+.. +.+....|||.|.+||||..+|++|-+.. +.||+.+||+.+
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr------------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR------------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh------------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 56899999999888888776642 13344679999999999999999998766 789999999774
Q ss_pred ----ccccccchHHHHHHHHHHHhcc---------CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCC
Q 001031 1021 ----TSKWFGEGEKYVKAVFSLASKI---------APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 1087 (1183)
Q Consensus 1021 ----~s~~~GesE~~Ir~lF~~A~k~---------~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~ 1087 (1183)
.+..|| +.++.|+-|.+. ..+-||||||..| +...|..+-+++++-...--|-....+
T Consensus 309 e~LlESELFG----ye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem-----pl~LQaKLLRVLQEkei~rvG~t~~~~ 379 (560)
T COG3829 309 ETLLESELFG----YEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM-----PLPLQAKLLRVLQEKEIERVGGTKPIP 379 (560)
T ss_pred HHHHHHHHhC----cCCccccccccCCCCcceeeccCCeEEehhhccC-----CHHHHHHHHHHHhhceEEecCCCCcee
Confidence 344455 345566666553 2368999999887 334455555565554333333333346
Q ss_pred CCEEEEEecCCC-------CCCcHHHHhccCcEEEecCCCHHHHHH----HHHHHHhh----ccC----CChhhHHHHHH
Q 001031 1088 ERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAK----EEL----ASDVDLEGIAN 1148 (1183)
Q Consensus 1088 ~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~I~lPd~eeR~e----ILk~iL~k----~~l----~~didl~~LA~ 1148 (1183)
..|+||||||+. ..+-+.+.-|+ .++.+.+|...+|.+ +..+++.+ .+. ..+..+..|.+
T Consensus 380 vDVRIIAATN~nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~ 458 (560)
T COG3829 380 VDVRIIAATNRNLEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLR 458 (560)
T ss_pred eEEEEEeccCcCHHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHh
Confidence 889999999973 22333344466 578889998877754 44555543 111 12223344443
Q ss_pred HcCCCcHHHHHHHHHHHHH
Q 001031 1149 MADGYSGSDLKNLCVTAAH 1167 (1183)
Q Consensus 1149 ~TeGySg~DL~~L~~~Aa~ 1167 (1183)
+.=--..++|+|++..|..
T Consensus 459 y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 459 YDWPGNVRELENVIERAVN 477 (560)
T ss_pred CCCCchHHHHHHHHHHHHh
Confidence 3322345788888888775
No 180
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=6.5e-09 Score=121.32 Aligned_cols=181 Identities=19% Similarity=0.153 Sum_probs=119.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-----------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI----------- 1013 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi----------- 1013 (1183)
..++++|+|++.+++.|.+.+.. .+.++.+||+||+|+||+++|.++|+.+-+.--
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS-------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 35789999999999999987763 344567999999999999999999998832110
Q ss_pred E---E-ec-----------Cccccccc---cc--------hHHHHHHHHHHHh----ccCCeEEEEeCCcccccCCCCcc
Q 001031 1014 N---I-SM-----------SSITSKWF---GE--------GEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPG 1063 (1183)
Q Consensus 1014 ~---I-~~-----------s~L~s~~~---Ge--------sE~~Ir~lF~~A~----k~~PsILfIDEID~Ll~~r~~~~ 1063 (1183)
. + .| +++.--.. +. .-..++.+-..+. ...+.||+|||+|.+ +
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-----~-- 154 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-----N-- 154 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-----C--
Confidence 0 0 00 11110000 00 1223555444433 345679999999987 1
Q ss_pred hHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhH
Q 001031 1064 EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDL 1143 (1183)
Q Consensus 1064 ~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl 1143 (1183)
....+.|+..++.. +...++|.+|+.++.+.+++++|+ ..+.++.|+.++-.+++...... ..+..+
T Consensus 155 -----~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~ 221 (365)
T PRK07471 155 -----ANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPR 221 (365)
T ss_pred -----HHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhccc---CCHHHH
Confidence 22344555555542 245677888888889999999999 78999999999988888765421 222333
Q ss_pred HHHHHHcCCCcHHHH
Q 001031 1144 EGIANMADGYSGSDL 1158 (1183)
Q Consensus 1144 ~~LA~~TeGySg~DL 1158 (1183)
..++..+.|-.+..+
T Consensus 222 ~~l~~~s~Gsp~~Al 236 (365)
T PRK07471 222 AALAALAEGSVGRAL 236 (365)
T ss_pred HHHHHHcCCCHHHHH
Confidence 567777776554333
No 181
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.03 E-value=4.9e-10 Score=130.66 Aligned_cols=204 Identities=23% Similarity=0.279 Sum_probs=128.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH----hCCcEEEEecCcc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE----AGANFINISMSSI 1020 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~e----Lg~pfi~I~~s~L 1020 (1183)
...+.+++|.....+.+++.+.. + .....+|||+|++||||+.+|++|... .+.||+.+||+.+
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~-------~-----ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA-------Y-----APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh-------h-----CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 34678899998888888887753 1 122346999999999999999998643 3679999999886
Q ss_pred ccc-----cccchHHHHHHHHHHHhc--------cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCC
Q 001031 1021 TSK-----WFGEGEKYVKAVFSLASK--------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 1087 (1183)
Q Consensus 1021 ~s~-----~~GesE~~Ir~lF~~A~k--------~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~ 1087 (1183)
... .|| ..+..|.-|.. ...++||+|||..| ++..++.+.+++++....--|-.....
T Consensus 142 ~en~~~~eLFG----~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~L-----P~~~Q~kLl~~le~g~~~rvG~~~~~~ 212 (403)
T COG1221 142 SENLQEAELFG----HEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRL-----PPEGQEKLLRVLEEGEYRRVGGSQPRP 212 (403)
T ss_pred CcCHHHHHHhc----cccceeecccCCcCchheecCCCEEehhhhhhC-----CHhHHHHHHHHHHcCceEecCCCCCcC
Confidence 443 222 22233333222 23479999999988 566777777777665544333333446
Q ss_pred CCEEEEEecCC--CCCCcH--HHHhccCcEEEecCCCHHHHH----HHHHHHHhh----ccCCChh----hHHHHHHHcC
Q 001031 1088 ERVLVLAATNR--PFDLDE--AVVRRLPRRLMVNLPDAPNRE----KIIRVILAK----EELASDV----DLEGIANMAD 1151 (1183)
Q Consensus 1088 ~~VlVIaTTN~--p~~Ld~--aLlrRFd~vI~I~lPd~eeR~----eILk~iL~k----~~l~~di----dl~~LA~~Te 1151 (1183)
..|++|++|+. ...+-. .+.+|. ..+.|.+|...+|. .++++++.. .+..... .+..|-...=
T Consensus 213 ~dVRli~AT~~~l~~~~~~g~dl~~rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~ 291 (403)
T COG1221 213 VDVRLICATTEDLEEAVLAGADLTRRL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDW 291 (403)
T ss_pred CCceeeeccccCHHHHHHhhcchhhhh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCC
Confidence 78999999864 233333 555533 34667777766664 355555543 2222111 1222222221
Q ss_pred CCcHHHHHHHHHHHHHHhH
Q 001031 1152 GYSGSDLKNLCVTAAHCPI 1170 (1183)
Q Consensus 1152 GySg~DL~~L~~~Aa~~Ai 1170 (1183)
--..++|++++..++..+-
T Consensus 292 pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 292 PGNIRELKNLVERAVAQAS 310 (403)
T ss_pred CCcHHHHHHHHHHHHHHhc
Confidence 2256899999999998874
No 182
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.02 E-value=1.3e-09 Score=125.25 Aligned_cols=143 Identities=26% Similarity=0.409 Sum_probs=95.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc--ccccchHHHH----HHHHHHHhc-cCC---eEEEEeCCcc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS--KWFGEGEKYV----KAVFSLASK-IAP---SVVFVDEVDS 1054 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s--~~~GesE~~I----r~lF~~A~k-~~P---sILfIDEID~ 1054 (1183)
.++||.||||+|||+||+++|..++.+|+.+.|...+. ..+|...-.. ...|..... .-. +|+|+|||++
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInr 123 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINR 123 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEecccc
Confidence 47999999999999999999999999999999864221 2222211110 000100000 001 4999999986
Q ss_pred cccCCCCcchHHHHHHHHHHHHHhhcCCc-ccCCCCEEEEEecC-----CCCCCcHHHHhccCcEEEecCC-CHHHHHHH
Q 001031 1055 MLGRRENPGEHEAMRKMKNEFMVNWDGLR-TKDKERVLVLAATN-----RPFDLDEAVVRRLPRRLMVNLP-DAPNREKI 1127 (1183)
Q Consensus 1055 Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~-~k~~~~VlVIaTTN-----~p~~Ld~aLlrRFd~vI~I~lP-d~eeR~eI 1127 (1183)
. ++..+.++..++++....+.+.. ..-+..++||+|.| ....|++++++||...+.++.| ...+...+
T Consensus 124 a-----~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i 198 (329)
T COG0714 124 A-----PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERII 198 (329)
T ss_pred C-----CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHH
Confidence 5 44455555555555544555555 55568899999999 4567899999999989999999 44445555
Q ss_pred HHHHH
Q 001031 1128 IRVIL 1132 (1183)
Q Consensus 1128 Lk~iL 1132 (1183)
+....
T Consensus 199 ~~~~~ 203 (329)
T COG0714 199 LARVG 203 (329)
T ss_pred HHhCc
Confidence 44443
No 183
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.01 E-value=1.6e-08 Score=109.70 Aligned_cols=193 Identities=22% Similarity=0.287 Sum_probs=137.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~ 1021 (1183)
.+.+.+|.|.+.+++.|.+.... |.+ ..|.++|||+|..||||++|++|+.++. +..+++++-.++.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~-------F~~---G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQ-------FAE---GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHH-------HHc---CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 36788999999999999876553 333 3477899999999999999999998887 6678888766543
Q ss_pred cccccchHHHHHHHHHHHhcc-CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC
Q 001031 1022 SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1183)
Q Consensus 1022 s~~~GesE~~Ir~lF~~A~k~-~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1183)
.+-.++...+.. ..-|||+|++- | ..++ . -...+...++|--...+.+|+|-||+|+.+
T Consensus 126 ---------~Lp~l~~~Lr~~~~kFIlFcDDLS--F----e~gd-~----~yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 126 ---------TLPDLVELLRARPEKFILFCDDLS--F----EEGD-D----AYKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred ---------hHHHHHHHHhcCCceEEEEecCCC--C----CCCc-h----HHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 234455554433 35799999984 1 1111 1 123344556776666779999999999865
Q ss_pred CCcH----------------------HHHhccCcEEEecCCCHHHHHHHHHHHHhhccCCC-hhhH----HHHHHHcCCC
Q 001031 1101 DLDE----------------------AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELAS-DVDL----EGIANMADGY 1153 (1183)
Q Consensus 1101 ~Ld~----------------------aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~~-didl----~~LA~~TeGy 1153 (1183)
.|.+ .+-.||+..+.|..++.++-.+|+.++.++.++.- +..+ .+-|..-.|.
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~R 265 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGR 265 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 5442 23349999999999999999999999999887763 3222 2344555688
Q ss_pred cHHHHHHHHHHHHH
Q 001031 1154 SGSDLKNLCVTAAH 1167 (1183)
Q Consensus 1154 Sg~DL~~L~~~Aa~ 1167 (1183)
||+--.+.++..+-
T Consensus 266 SGR~A~QF~~~~~g 279 (287)
T COG2607 266 SGRVAWQFIRDLAG 279 (287)
T ss_pred ccHhHHHHHHHHHh
Confidence 88877777665443
No 184
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.00 E-value=2.2e-09 Score=123.92 Aligned_cols=164 Identities=18% Similarity=0.278 Sum_probs=99.2
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEE------
Q 001031 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFI------ 1013 (1183)
Q Consensus 947 tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-------g~pfi------ 1013 (1183)
-|..|+|+++++..|.-.+.. ....++||.|++|+|||+|+++++..+ ++++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~--------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~ 67 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVID--------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDP 67 (337)
T ss_pred CccccccHHHHHHHHHHHhcC--------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCc
Confidence 377899999999887554431 112579999999999999999999877 33221
Q ss_pred ---EEecC-------------------cc-----ccccccchHHHHHHH-------HH--HHhccCCeEEEEeCCccccc
Q 001031 1014 ---NISMS-------------------SI-----TSKWFGEGEKYVKAV-------FS--LASKIAPSVVFVDEVDSMLG 1057 (1183)
Q Consensus 1014 ---~I~~s-------------------~L-----~s~~~GesE~~Ir~l-------F~--~A~k~~PsILfIDEID~Ll~ 1057 (1183)
..+|. ++ ....+|.. .+... |. ...+...++||||||+.+
T Consensus 68 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~--d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L-- 143 (337)
T TIGR02030 68 EMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTL--DIERALTEGVKAFEPGLLARANRGILYIDEVNLL-- 143 (337)
T ss_pred cccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecch--hHhhHhhcCCEEeecCcceeccCCEEEecChHhC--
Confidence 00000 00 01122221 01111 00 011233489999999987
Q ss_pred CCCCcchHHHHHHHHHHHH--HhhcCCcccCCCCEEEEEecCCCC-CCcHHHHhccCcEEEecCCCH-HHHHHHHHHH
Q 001031 1058 RRENPGEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVI 1131 (1183)
Q Consensus 1058 ~r~~~~~~e~l~~il~~LL--~~Ldgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRFd~vI~I~lPd~-eeR~eILk~i 1131 (1183)
++..+..+..++.+-. ...+|.....+.++++|+|+|..+ .|.++++.||...+.+..|.. ++|.+|++..
T Consensus 144 ---~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~ 218 (337)
T TIGR02030 144 ---EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERR 218 (337)
T ss_pred ---CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhh
Confidence 2222222222222110 111333333346799999998765 799999999999999988875 8888888773
No 185
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.99 E-value=9.9e-09 Score=108.45 Aligned_cols=144 Identities=18% Similarity=0.201 Sum_probs=98.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCc------------------------EEEEecCccccccccchHHHHHHHHHH
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEAGAN------------------------FINISMSSITSKWFGEGEKYVKAVFSL 1038 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eLg~p------------------------fi~I~~s~L~s~~~GesE~~Ir~lF~~ 1038 (1183)
.++.+||+||+|+|||++|+++++.+... +..+.... .. .....++.+...
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHHH
Confidence 44679999999999999999999997432 22221110 00 112345555555
Q ss_pred Hhc----cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEE
Q 001031 1039 ASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRL 1114 (1183)
Q Consensus 1039 A~k----~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI 1114 (1183)
+.. ....||||||+|.|- ....+.|+..++.. +...++|++|+.+..+.+++.+|+ ..+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~------------~~~~~~Ll~~le~~----~~~~~~il~~~~~~~l~~~i~sr~-~~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMN------------EAAANALLKTLEEP----PPNTLFILITPSPEKLLPTIRSRC-QVL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhC------------HHHHHHHHHHhcCC----CCCeEEEEEECChHhChHHHHhhc-EEe
Confidence 543 345699999999882 12234566666542 245667777777789999999999 689
Q ss_pred EecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCC
Q 001031 1115 MVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGY 1153 (1183)
Q Consensus 1115 ~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGy 1153 (1183)
.+..|+.++..++++.. ++ ++..+..++..+.|.
T Consensus 151 ~~~~~~~~~~~~~l~~~----gi-~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ----GI-SEEAAELLLALAGGS 184 (188)
T ss_pred eCCCCCHHHHHHHHHHc----CC-CHHHHHHHHHHcCCC
Confidence 99999999988888775 33 355677888887764
No 186
>PRK09087 hypothetical protein; Validated
Probab=98.99 E-value=7.9e-09 Score=113.15 Aligned_cols=148 Identities=18% Similarity=0.190 Sum_probs=98.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcch
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~ 1064 (1183)
+.++|+||+|+|||+|++++++..++.++.. ..+.. .++..... .+|+|||++.+- ..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~-----------~~~~~~~~---~~l~iDDi~~~~------~~ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGS-----------DAANAAAE---GPVLIEDIDAGG------FD 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcch-----------HHHHhhhc---CeEEEECCCCCC------CC
Confidence 3599999999999999999998876654433 22111 11111111 589999999761 22
Q ss_pred HHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCC---CcHHHHhccC--cEEEecCCCHHHHHHHHHHHHhhccCC-
Q 001031 1065 HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA- 1138 (1183)
Q Consensus 1065 ~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRFd--~vI~I~lPd~eeR~eILk~iL~k~~l~- 1138 (1183)
++.+..+++.+... .+.+||+++..+.. ..+.+++||. .++.+..|+.++|.++++..+....+.
T Consensus 103 ~~~lf~l~n~~~~~---------g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 ETGLFHLINSVRQA---------GTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred HHHHHHHHHHHHhC---------CCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 34455555554421 34566666654432 3578999884 689999999999999999999876654
Q ss_pred ChhhHHHHHHHcCCCcHHHHHHHHHH
Q 001031 1139 SDVDLEGIANMADGYSGSDLKNLCVT 1164 (1183)
Q Consensus 1139 ~didl~~LA~~TeGySg~DL~~L~~~ 1164 (1183)
++..++.|+++..| +.+.+..+++.
T Consensus 174 ~~ev~~~La~~~~r-~~~~l~~~l~~ 198 (226)
T PRK09087 174 DPHVVYYLVSRMER-SLFAAQTIVDR 198 (226)
T ss_pred CHHHHHHHHHHhhh-hHHHHHHHHHH
Confidence 66678889988874 33444443333
No 187
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=98.99 E-value=1.9e-09 Score=101.42 Aligned_cols=97 Identities=25% Similarity=0.418 Sum_probs=81.8
Q ss_pred cceeccccC--CCCceeeec-ceeEEccCCcc-ceeecCCCCCccceEEEEeecCCcceEEEEEecCCceEEEcCeecCC
Q 001031 134 WARLISQCS--QNSHLSMTG-AVFTVGHNRQC-DLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPK 209 (1183)
Q Consensus 134 W~rL~s~~~--~~p~~~i~~-~~~t~G~~~~c-d~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vNg~~~~k 209 (1183)
|+.|..+.. ....+.|.. ..|+|||+..| |+.|.++.+|..||.|.....+ ...+++..+.||+ +|||+.+.+
T Consensus 1 ~~~L~~~~~~~~~~~~~l~~~~~~~iGr~~~~~~i~l~~~~iS~~H~~i~~~~~~--~~~~~~~~s~~g~-~vn~~~~~~ 77 (102)
T cd00060 1 VPRLVVLSGDASGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGDG--GVVLIDLGSTNGT-FVNGQRVSP 77 (102)
T ss_pred CeEEEEecCCCceeEEEECCCCeEEECcCCCcCCEEcCCCCeeCcceEEEEcCCC--CEEEEECCCCCCe-EECCEECCC
Confidence 566777765 567888888 99999999999 9999999999999999976433 3478889999999 699999999
Q ss_pred CceEEeeCCCEEEEccCCCeeEEee
Q 001031 210 DSQVVLRGGDELVFSPSGKHSYIFQ 234 (1183)
Q Consensus 210 ~~~~~L~~gDev~f~~~~~~ayifq 234 (1183)
+.+++|..||+|.|+. +.+.|.|+
T Consensus 78 ~~~~~l~~gd~i~ig~-~~~~~~~~ 101 (102)
T cd00060 78 GEPVRLRDGDVIRLGN-TSISFRFE 101 (102)
T ss_pred CCcEECCCCCEEEECC-eEEEEEEe
Confidence 9999999999999976 45555554
No 188
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.99 E-value=2.4e-09 Score=125.65 Aligned_cols=201 Identities=24% Similarity=0.269 Sum_probs=136.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~ 1021 (1183)
...+.+|+|....+.++.+.|... .+....|||.|.+||||..+|++|-+.. +.||+.+||+.+-
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V------------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlP 286 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV------------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALP 286 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH------------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccc
Confidence 556778999999999988877631 2233579999999999999999998776 7899999998753
Q ss_pred -----cccccchHHHHHHHHHHHhccC--------CeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCC
Q 001031 1022 -----SKWFGEGEKYVKAVFSLASKIA--------PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKE 1088 (1183)
Q Consensus 1022 -----s~~~GesE~~Ir~lF~~A~k~~--------PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~ 1088 (1183)
+..|| +.++.|.-|.... .+-||+|||..| +...|..+-+++++--.+--|-...-+.
T Consensus 287 esLlESELFG----HeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel-----PL~lQaKLLRvLQegEieRvG~~r~ikV 357 (550)
T COG3604 287 ESLLESELFG----HEKGAFTGAINTRRGRFELADGGTLFLDEIGEL-----PLALQAKLLRVLQEGEIERVGGDRTIKV 357 (550)
T ss_pred hHHHHHHHhc----ccccccccchhccCcceeecCCCeEechhhccC-----CHHHHHHHHHHHhhcceeecCCCceeEE
Confidence 34455 4566777665443 469999999877 4455556666666543333333333357
Q ss_pred CEEEEEecCCCCCCcHHHH---------hccCcEEEecCCCHHHHHH----HHHHHHhhc----cC----CChhhHHHHH
Q 001031 1089 RVLVLAATNRPFDLDEAVV---------RRLPRRLMVNLPDAPNREK----IIRVILAKE----EL----ASDVDLEGIA 1147 (1183)
Q Consensus 1089 ~VlVIaTTN~p~~Ld~aLl---------rRFd~vI~I~lPd~eeR~e----ILk~iL~k~----~l----~~didl~~LA 1147 (1183)
.|.|||+||+ +|.+++. -|+ .++.+.+|...+|.. +.++|+++. +. .+...++.|.
T Consensus 358 DVRiIAATNR--DL~~~V~~G~FRaDLYyRL-sV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~ 434 (550)
T COG3604 358 DVRVIAATNR--DLEEMVRDGEFRADLYYRL-SVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLS 434 (550)
T ss_pred EEEEEeccch--hHHHHHHcCcchhhhhhcc-cccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHH
Confidence 7999999997 3333333 355 467777888777643 445555542 22 1233345555
Q ss_pred HHcCCCcHHHHHHHHHHHHHHh
Q 001031 1148 NMADGYSGSDLKNLCVTAAHCP 1169 (1183)
Q Consensus 1148 ~~TeGySg~DL~~L~~~Aa~~A 1169 (1183)
.+.=--..++|++++..|+..|
T Consensus 435 ~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 435 SYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred cCCCCCcHHHHHHHHHHHHHHh
Confidence 5443335589999999999976
No 189
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.98 E-value=3.3e-09 Score=122.22 Aligned_cols=176 Identities=18% Similarity=0.213 Sum_probs=103.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc-----ccchH-------HHHHHHHHHHhccCCeEEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGE-------KYVKAVFSLASKIAPSVVFV 1049 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~-----~GesE-------~~Ir~lF~~A~k~~PsILfI 1049 (1183)
..|||+|++||||+++|++|-... +.||+.++|..+.... +|... ..-...|..| ..++|||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEEEe
Confidence 569999999999999999997765 5799999998754321 22110 0011123333 3589999
Q ss_pred eCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCC-------CCCcHHHHhccCcEEEecCCCHH
Q 001031 1050 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 1122 (1183)
Q Consensus 1050 DEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~I~lPd~e 1122 (1183)
|||+.| +...+..+.++++.-.....|.....+.++.+|++|+.. ..+.+.+..|| ..+.|.+|...
T Consensus 100 dei~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl-~~~~i~lPpLR 173 (329)
T TIGR02974 100 DELATA-----SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRL-AFDVITLPPLR 173 (329)
T ss_pred CChHhC-----CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHh-cchhcCCCchh
Confidence 999988 322333332322221101111111223668999999753 34567778888 35678888877
Q ss_pred HHHH----HHHHHHhhc----cC-----CChhhHHHHHHHcCCCcHHHHHHHHHHHHHHh
Q 001031 1123 NREK----IIRVILAKE----EL-----ASDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1169 (1183)
Q Consensus 1123 eR~e----ILk~iL~k~----~l-----~~didl~~LA~~TeGySg~DL~~L~~~Aa~~A 1169 (1183)
+|.+ ++++++.+. +. ..+..+..|..+.=--..++|++++..|+..+
T Consensus 174 eR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 174 ERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred hhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 7654 445554431 11 12333444444432335578888888887754
No 190
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.97 E-value=3.7e-09 Score=121.66 Aligned_cols=201 Identities=19% Similarity=0.174 Sum_probs=118.5
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc
Q 001031 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK 1023 (1183)
Q Consensus 947 tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~ 1023 (1183)
.|++++|.....+.+.+.+... ......|||+|++||||+++|++|-... +.||+.++|..+...
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~------------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRL------------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHH
Confidence 4667889888888888777531 1123569999999999999999997665 579999999875321
Q ss_pred -----cccchHH-------HHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEE
Q 001031 1024 -----WFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 1091 (1183)
Q Consensus 1024 -----~~GesE~-------~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~Vl 1091 (1183)
++|.... .....|. ....+.|||||||.| +...+..+..+++.-.....+-....+.++.
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~---~a~gGtL~l~~i~~L-----~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~R 143 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATA-----PMLVQEKLLRVIEYGELERVGGSQPLQVNVR 143 (326)
T ss_pred HHHHHHccccccccCCcccccCCchh---ccCCCeEEeCChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeccEE
Confidence 2221100 0012232 234589999999988 2222222222222110000011111124689
Q ss_pred EEEecCCC-------CCCcHHHHhccCcEEEecCCCHHHHHH----HHHHHHhhc----cC-----CChhhHHHHHHHcC
Q 001031 1092 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----EL-----ASDVDLEGIANMAD 1151 (1183)
Q Consensus 1092 VIaTTN~p-------~~Ld~aLlrRFd~vI~I~lPd~eeR~e----ILk~iL~k~----~l-----~~didl~~LA~~Te 1151 (1183)
||++|+.. ..+.+.+..|| ..+.|.+|...+|.+ ++.+++.+. +. .+...+..|..+.=
T Consensus 144 iI~~s~~~l~~l~~~g~f~~dL~~~l-~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~W 222 (326)
T PRK11608 144 LVCATNADLPAMVAEGKFRADLLDRL-AFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRW 222 (326)
T ss_pred EEEeCchhHHHHHHcCCchHHHHHhc-CCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCC
Confidence 99988753 45667888888 346777888777744 555555332 11 12233444444332
Q ss_pred CCcHHHHHHHHHHHHHH
Q 001031 1152 GYSGSDLKNLCVTAAHC 1168 (1183)
Q Consensus 1152 GySg~DL~~L~~~Aa~~ 1168 (1183)
--+.++|+++++.|+..
T Consensus 223 PGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 223 PGNIRELKNVVERSVYR 239 (326)
T ss_pred CcHHHHHHHHHHHHHHh
Confidence 33557888888888764
No 191
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=8.3e-09 Score=118.21 Aligned_cols=182 Identities=13% Similarity=0.188 Sum_probs=121.5
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE----------EEEe
Q 001031 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF----------INIS 1016 (1183)
Q Consensus 947 tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pf----------i~I~ 1016 (1183)
.|++|+|++.+++.|.+.+.. .+-++.+||+||+|+||+++|.++|+.+-+.- ...+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 488999999999999998863 23347899999999999999999999873321 1112
Q ss_pred cCcccccc-----ccc--------------------hHHHHHHHHHHHhc----cCCeEEEEeCCcccccCCCCcchHHH
Q 001031 1017 MSSITSKW-----FGE--------------------GEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEA 1067 (1183)
Q Consensus 1017 ~s~L~s~~-----~Ge--------------------sE~~Ir~lF~~A~k----~~PsILfIDEID~Ll~~r~~~~~~e~ 1067 (1183)
.+++.--. -|. ....++.+...+.. ....|++||++|.|-
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~----------- 137 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN----------- 137 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-----------
Confidence 22221000 010 01245555444432 235799999999881
Q ss_pred HHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHH
Q 001031 1068 MRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIA 1147 (1183)
Q Consensus 1068 l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA 1147 (1183)
....+.|+..++.. + +.++|..|+.++.|.+++++|+ ..+.|+.++.++..++++....... .+.+...++
T Consensus 138 -~~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~ 208 (314)
T PRK07399 138 -EAAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELL 208 (314)
T ss_pred -HHHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHHH
Confidence 22345555555542 2 3467777888899999999999 7899999999999888887643221 122357788
Q ss_pred HHcCCCcHHHHHHH
Q 001031 1148 NMADGYSGSDLKNL 1161 (1183)
Q Consensus 1148 ~~TeGySg~DL~~L 1161 (1183)
....|-.+..+..+
T Consensus 209 ~~a~Gs~~~al~~l 222 (314)
T PRK07399 209 ALAQGSPGAAIANI 222 (314)
T ss_pred HHcCCCHHHHHHHH
Confidence 88887665555433
No 192
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.4e-09 Score=119.55 Aligned_cols=112 Identities=26% Similarity=0.424 Sum_probs=76.5
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhh-hcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-ccccch
Q 001031 951 IGALENVKDTLKELVMLPLQRPELF-CKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG 1028 (1183)
Q Consensus 951 I~Gle~vk~~L~e~V~lpl~~~elf-~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s-~~~Ges 1028 (1183)
++|++..|+.|.-++..-.+|-... .+..+--.-.+|||.||+|+|||.||+.+|+.++.||..-++.+|.. .|+|+.
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGED 142 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGED 142 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchh
Confidence 6788888877754443211111000 00111122247999999999999999999999999999999888764 688876
Q ss_pred -HHHHHHHHHHH----hccCCeEEEEeCCcccccCCCCc
Q 001031 1029 -EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENP 1062 (1183)
Q Consensus 1029 -E~~Ir~lF~~A----~k~~PsILfIDEID~Ll~~r~~~ 1062 (1183)
|..+-.+++.| .+...+||||||||.+..+..++
T Consensus 143 VENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~ 181 (408)
T COG1219 143 VENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENP 181 (408)
T ss_pred HHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCC
Confidence 44555565544 34456999999999998655443
No 193
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.96 E-value=5.2e-09 Score=100.67 Aligned_cols=127 Identities=33% Similarity=0.462 Sum_probs=81.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecCccccc--------------cccchHHHHHHHHHHHhccCCeEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSITSK--------------WFGEGEKYVKAVFSLASKIAPSVV 1047 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~p---fi~I~~s~L~s~--------------~~GesE~~Ir~lF~~A~k~~PsIL 1047 (1183)
..++|+||||||||++++.+|..+... ++.+++...... ...........++..++...+.||
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 579999999999999999999999765 777776653321 112345567788899988888999
Q ss_pred EEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCC-CCCCcHHHHhccCcEEEecCC
Q 001031 1048 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PFDLDEAVVRRLPRRLMVNLP 1119 (1183)
Q Consensus 1048 fIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~-p~~Ld~aLlrRFd~vI~I~lP 1119 (1183)
||||++.+.... ................ ........+|+++|. ....+..+..|++..+.+..+
T Consensus 83 iiDei~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAE-----QEALLLLLEELRLLLL---LKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHH-----HHHHHHhhhhhHHHHH---HHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 999999884211 1111000000000000 012256788888886 445555666688877776544
No 194
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.96 E-value=2.3e-09 Score=133.28 Aligned_cols=167 Identities=22% Similarity=0.325 Sum_probs=102.8
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------------------
Q 001031 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------------------ 1008 (1183)
Q Consensus 947 tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL------------------ 1008 (1183)
-|.+|+|++.++..|.-.... . ...+|||.|++|||||++|++|++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~----------~----~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~ 67 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVD----------P----RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDP 67 (633)
T ss_pred CcchhcChHHHHHHHHHHhhC----------C----CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCc
Confidence 377899999999887554431 1 12479999999999999999999987
Q ss_pred -----------------CCcEEEEecCccccccccch--HHHHHH---HHH--HHhccCCeEEEEeCCcccccCCCCcch
Q 001031 1009 -----------------GANFINISMSSITSKWFGEG--EKYVKA---VFS--LASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1183)
Q Consensus 1009 -----------------g~pfi~I~~s~L~s~~~Ges--E~~Ir~---lF~--~A~k~~PsILfIDEID~Ll~~r~~~~~ 1064 (1183)
..||+.+.+.......+|.. +..+.. .+. .......+|||||||+.+ ++..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l-----~~~~ 142 (633)
T TIGR02442 68 EEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLL-----DDHL 142 (633)
T ss_pred cccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhC-----CHHH
Confidence 25677666554433344432 111100 000 001123379999999988 2222
Q ss_pred HHHHHHHHHHHH--HhhcCCcccCCCCEEEEEecCCC-CCCcHHHHhccCcEEEecCCC-HHHHHHHHHHHH
Q 001031 1065 HEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRP-FDLDEAVVRRLPRRLMVNLPD-APNREKIIRVIL 1132 (1183)
Q Consensus 1065 ~e~l~~il~~LL--~~Ldgl~~k~~~~VlVIaTTN~p-~~Ld~aLlrRFd~vI~I~lPd-~eeR~eILk~iL 1132 (1183)
+..+..++++-. ....|.....+.++++|+|+|+. ..|.++++.||+..+.++.|. .+++.++++..+
T Consensus 143 q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 143 VDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred HHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHH
Confidence 222222222111 01123322334679999999965 468899999999888887664 577777776543
No 195
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.95 E-value=1.1e-08 Score=123.71 Aligned_cols=173 Identities=20% Similarity=0.320 Sum_probs=106.3
Q ss_pred CCCce-EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHH-H---hccCCeEEEEeCCcccc
Q 001031 982 KPCKG-ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSL-A---SKIAPSVVFVDEVDSML 1056 (1183)
Q Consensus 982 kP~~g-VLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~GesE~~Ir~lF~~-A---~k~~PsILfIDEID~Ll 1056 (1183)
+|+.. +||+||||-|||+||+.||+.+|+.++++++++-.+. ......|..+... - ...+|.+|+|||||.-
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa- 399 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA- 399 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCC-
Confidence 34434 7999999999999999999999999999999874321 1111222222211 1 2357999999999842
Q ss_pred cCCCCcchHHHHHHHHHHHHH----hhcCCcccC-------C---CCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHH
Q 001031 1057 GRRENPGEHEAMRKMKNEFMV----NWDGLRTKD-------K---ERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAP 1122 (1183)
Q Consensus 1057 ~~r~~~~~~e~l~~il~~LL~----~Ldgl~~k~-------~---~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~e 1122 (1183)
...+. .++..++. +..|-.... . -.--||+.||....-.-.-+|-|..++.|..|...
T Consensus 400 -------~~~~V-dvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s 471 (877)
T KOG1969|consen 400 -------PRAAV-DVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQS 471 (877)
T ss_pred -------cHHHH-HHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChh
Confidence 11122 22222222 111111100 0 11237888887654322334468889999999988
Q ss_pred HHHHHHHHHHhhccCCCh-hhHHHHHHHcCCCcHHHHHHHHHHHHHHh
Q 001031 1123 NREKIIRVILAKEELASD-VDLEGIANMADGYSGSDLKNLCVTAAHCP 1169 (1183)
Q Consensus 1123 eR~eILk~iL~k~~l~~d-idl~~LA~~TeGySg~DL~~L~~~Aa~~A 1169 (1183)
...+-|+.++.++++.-+ -.+..|+..++ .||+.-+++-.+.+
T Consensus 472 ~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~----~DIRsCINtLQfLa 515 (877)
T KOG1969|consen 472 RLVERLNEICHRENMRADSKALNALCELTQ----NDIRSCINTLQFLA 515 (877)
T ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHhc----chHHHHHHHHHHHH
Confidence 888889999988887533 34666666665 46666555555444
No 196
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.93 E-value=2.8e-08 Score=116.55 Aligned_cols=171 Identities=20% Similarity=0.306 Sum_probs=116.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccC
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGR 1058 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL-----g~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~ 1058 (1183)
...++||||.|.|||+|++|++++. +.-++.+....++..++......-..-|..-+ .-.+++||+|+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 4569999999999999999999887 33466676666555444332222233455555 5579999999998544
Q ss_pred CCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCC---CcHHHHhccC--cEEEecCCCHHHHHHHHHHHHh
Q 001031 1059 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILA 1133 (1183)
Q Consensus 1059 r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~---Ld~aLlrRFd--~vI~I~lPd~eeR~eILk~iL~ 1133 (1183)
.. .++....+++.+... .+-+|+.+...|.. +.+.+++||. .++.+..|+.+.|..|++....
T Consensus 191 ~~---~qeefFh~FN~l~~~---------~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 191 ER---TQEEFFHTFNALLEN---------GKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred hh---HHHHHHHHHHHHHhc---------CCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 32 255566666666422 34455555555654 4589999985 4778899999999999999877
Q ss_pred hccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHh
Q 001031 1134 KEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1169 (1183)
Q Consensus 1134 k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~~A 1169 (1183)
..++. ++..+..||.... -+.++|..+++.....+
T Consensus 259 ~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a 294 (408)
T COG0593 259 DRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFA 294 (408)
T ss_pred hcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHH
Confidence 76655 5555777777765 35566666665544443
No 197
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.2e-08 Score=126.87 Aligned_cols=180 Identities=22% Similarity=0.376 Sum_probs=132.1
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEe
Q 001031 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINIS 1016 (1183)
Q Consensus 947 tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~pfi~I~ 1016 (1183)
.+|-++|.++-+..+.+.+.. +..++-+|.|+||+|||.++..+|... +..++.++
T Consensus 168 klDPvIGRd~EI~r~iqIL~R--------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSR--------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhc--------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 456788999888888776652 222457899999999999999999875 56678888
Q ss_pred cCcccc--ccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcch-HHHHHHHHHHHHHhhcCCcccCCCCEEEE
Q 001031 1017 MSSITS--KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE-HEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1183)
Q Consensus 1017 ~s~L~s--~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~-~e~l~~il~~LL~~Ldgl~~k~~~~VlVI 1093 (1183)
+..+.. +|-|+.|..++.+.....+..+.||||||||.+.+.....+. ..+.+-+.-.| ..+.+.+|
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL----------ARGeL~~I 303 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL----------ARGELRCI 303 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH----------hcCCeEEE
Confidence 887754 578999999999999999988999999999999876544332 22322222222 23568888
Q ss_pred EecCC-----CCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-----ChhhHHHHHHHcC
Q 001031 1094 AATNR-----PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-----SDVDLEGIANMAD 1151 (1183)
Q Consensus 1094 aTTN~-----p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-----~didl~~LA~~Te 1151 (1183)
++|.. ...=|.++-||| ..|.+.-|+.++-..|++-+-.+.... .+..+...+.+++
T Consensus 304 GATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~ 370 (786)
T COG0542 304 GATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSD 370 (786)
T ss_pred EeccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHH
Confidence 88843 346688999999 688999999999999999876653322 3344555554444
No 198
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.92 E-value=1.2e-08 Score=128.06 Aligned_cols=202 Identities=21% Similarity=0.278 Sum_probs=123.0
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s 1022 (1183)
..|++++|....++.+.+.+... ......|||+|++|||||++|++|.... +.+|+.++|..+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~------------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMV------------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHH------------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 46788999998888887766531 1122479999999999999999998765 67999999987532
Q ss_pred -----ccccchH-------HHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCE
Q 001031 1023 -----KWFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1090 (1183)
Q Consensus 1023 -----~~~GesE-------~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~V 1090 (1183)
.++|... ......|..| ..++||||||+.| +...+..+.+++++-.....+-......++
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L-----~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 512 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDM-----PLELQPKLLRVLQEQEFERLGSNKIIQTDV 512 (686)
T ss_pred hHhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhC-----CHHHHHHHHHHHHhCCEEeCCCCCcccceE
Confidence 2233210 0112234333 3589999999988 222233332322221100111111123578
Q ss_pred EEEEecCCC-------CCCcHHHHhccCcEEEecCCCHHHHHH----HHHHHHhhc----cC----CChhhHHHHHHHcC
Q 001031 1091 LVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----EL----ASDVDLEGIANMAD 1151 (1183)
Q Consensus 1091 lVIaTTN~p-------~~Ld~aLlrRFd~vI~I~lPd~eeR~e----ILk~iL~k~----~l----~~didl~~LA~~Te 1151 (1183)
.+|++|+.. ..+...+..|+ ..+.|.+|...+|.+ ++++++.+. +. .+...+..|..+.=
T Consensus 513 RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~W 591 (686)
T PRK15429 513 RLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEW 591 (686)
T ss_pred EEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCC
Confidence 999999763 23455566676 467888998888765 455555432 11 12333455544433
Q ss_pred CCcHHHHHHHHHHHHHH
Q 001031 1152 GYSGSDLKNLCVTAAHC 1168 (1183)
Q Consensus 1152 GySg~DL~~L~~~Aa~~ 1168 (1183)
-.+.++|+++++.|+..
T Consensus 592 PGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 592 PGNVRELENVIERAVLL 608 (686)
T ss_pred CCcHHHHHHHHHHHHHh
Confidence 34568999999888864
No 199
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.92 E-value=3.5e-09 Score=129.25 Aligned_cols=202 Identities=19% Similarity=0.219 Sum_probs=120.1
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s 1022 (1183)
.+|++++|.....+.+.+.+... ......|||+|++||||+++|++|.... +.||+.++|..+..
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~------------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVV------------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHH------------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 57889999999888888877531 1223579999999999999999999875 67999999987633
Q ss_pred cc-----ccchHHH-------HHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCE
Q 001031 1023 KW-----FGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1090 (1183)
Q Consensus 1023 ~~-----~GesE~~-------Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~V 1090 (1183)
.+ +|..... -...|. ....++|||||||.| +...+..+.+++++-...-.+-....+.++
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~GtL~ldei~~L-----~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~ 332 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFE---LADGGTLFLDEIGEI-----SPAFQAKLLRVLQEGEFERVGGNRTLKVDV 332 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCccc---ccCCCeEEEechhhC-----CHHHHHHHHHHHhcCcEEECCCCceEeecE
Confidence 21 1211000 001122 224589999999988 222222222222211000001011112458
Q ss_pred EEEEecCCC-------CCCcHHHHhccCcEEEecCCCHHHH----HHHHHHHHhhcc----C---CChhhHHHHHHHcCC
Q 001031 1091 LVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNR----EKIIRVILAKEE----L---ASDVDLEGIANMADG 1152 (1183)
Q Consensus 1091 lVIaTTN~p-------~~Ld~aLlrRFd~vI~I~lPd~eeR----~eILk~iL~k~~----l---~~didl~~LA~~TeG 1152 (1183)
.+|++|+.. ..+.+.+..|+ ..+.+.+|...+| ..|+++++.+.. . .++..+..|..+.=.
T Consensus 333 riI~~s~~~l~~~~~~~~f~~~L~~rl-~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WP 411 (534)
T TIGR01817 333 RLVAATNRDLEEAVAKGEFRADLYYRI-NVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWP 411 (534)
T ss_pred EEEEeCCCCHHHHHHcCCCCHHHHHHh-cCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCC
Confidence 899988753 34666777777 3566667766555 356666665421 1 133334555554323
Q ss_pred CcHHHHHHHHHHHHHH
Q 001031 1153 YSGSDLKNLCVTAAHC 1168 (1183)
Q Consensus 1153 ySg~DL~~L~~~Aa~~ 1168 (1183)
-..++|+++++.|+..
T Consensus 412 GNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 412 GNVRELENCLERTATL 427 (534)
T ss_pred ChHHHHHHHHHHHHHh
Confidence 4568888888888764
No 200
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.91 E-value=7e-09 Score=126.17 Aligned_cols=202 Identities=20% Similarity=0.254 Sum_probs=119.3
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH-----------hCCcEEE
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE-----------AGANFIN 1014 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~e-----------Lg~pfi~ 1014 (1183)
.+|++++|....++.+.+.+.. + ......|||+|++||||+++|++|-+. .+.||+.
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~-------~-----A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL-------Y-----ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------H-----hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 4688899999988888887753 1 112357999999999999999999877 3679999
Q ss_pred EecCccccc-----cccchHH--------HHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcC
Q 001031 1015 ISMSSITSK-----WFGEGEK--------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1081 (1183)
Q Consensus 1015 I~~s~L~s~-----~~GesE~--------~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldg 1081 (1183)
++|..+... .+|..+. .-..+|..| ..+.||||||+.| +...+..+.+++++-....-|
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~L-----p~~~Q~kLl~~L~e~~~~r~G 355 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEM-----PLPLQTRLLRVLEEKEVTRVG 355 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhC-----CHHHHHHHHhhhhcCeEEecC
Confidence 999875432 2332111 011234433 3489999999988 323333333333221111111
Q ss_pred CcccCCCCEEEEEecCCC-------CCCcHHHHhccCcEEEecCCCHHHHHH----HHHHHHhh----ccCC-ChhhH--
Q 001031 1082 LRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAK----EELA-SDVDL-- 1143 (1183)
Q Consensus 1082 l~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~I~lPd~eeR~e----ILk~iL~k----~~l~-~didl-- 1143 (1183)
-....+.++.+|++|+.. ..+.+.+..|+ ..+.+.+|...+|.+ ++++++.+ .+.. ....+
T Consensus 356 ~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 434 (538)
T PRK15424 356 GHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQG 434 (538)
T ss_pred CCceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 111123567999999763 12444555566 467788888777754 55666654 2211 11111
Q ss_pred -----HHHHHHcCCCcHHHHHHHHHHHHHH
Q 001031 1144 -----EGIANMADGYSGSDLKNLCVTAAHC 1168 (1183)
Q Consensus 1144 -----~~LA~~TeGySg~DL~~L~~~Aa~~ 1168 (1183)
..|..+.=-.+.++|++++..++..
T Consensus 435 ~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 435 LQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred hHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 1222221123458999998888764
No 201
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.90 E-value=2.1e-10 Score=114.85 Aligned_cols=112 Identities=27% Similarity=0.429 Sum_probs=68.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc--ccccchH------HHHHHHHHHHhccCCeEEEEeCCccccc
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS--KWFGEGE------KYVKAVFSLASKIAPSVVFVDEVDSMLG 1057 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s--~~~GesE------~~Ir~lF~~A~k~~PsILfIDEID~Ll~ 1057 (1183)
+|||+||||||||+||+.+|+.++.+++.+.+..... ..+|... ......+..+.+ .+.|+|||||+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccC--
Confidence 5899999999999999999999999999988765221 1111100 000011111111 5689999999865
Q ss_pred CCCCcchHHHHHHHHHHHHHhhcCCcc---------cCCC------CEEEEEecCCCC----CCcHHHHhcc
Q 001031 1058 RRENPGEHEAMRKMKNEFMVNWDGLRT---------KDKE------RVLVLAATNRPF----DLDEAVVRRL 1110 (1183)
Q Consensus 1058 ~r~~~~~~e~l~~il~~LL~~Ldgl~~---------k~~~------~VlVIaTTN~p~----~Ld~aLlrRF 1110 (1183)
+ ..++..++..++.-.. .... .+.+|+|+|+.. .+++++++||
T Consensus 78 ---~-------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 ---P-------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ---C-------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 1 2233333333332110 0112 499999999988 8999999998
No 202
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.90 E-value=1.7e-08 Score=122.68 Aligned_cols=203 Identities=17% Similarity=0.224 Sum_probs=122.9
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc
Q 001031 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK 1023 (1183)
Q Consensus 947 tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~ 1023 (1183)
.+.+++|....++.+.+.+... ......|||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~------------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~ 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV------------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH------------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH
Confidence 4567899998888888877631 1223579999999999999999998875 579999999876432
Q ss_pred -----cccchHH-------HHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEE
Q 001031 1024 -----WFGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 1091 (1183)
Q Consensus 1024 -----~~GesE~-------~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~Vl 1091 (1183)
.+|.... .....|..| ..+.|||||||.| +...+..+.+++++-....-+-....+..+.
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 324 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGEL-----PLALQAKLLRVLQYGEIQRVGSDRSLRVDVR 324 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhC-----CHHHHHHHHHHHhcCCEeeCCCCcceecceE
Confidence 2221100 011123333 3589999999988 2222322222222110000011111235689
Q ss_pred EEEecCCC-------CCCcHHHHhccCcEEEecCCCHHHHHH----HHHHHHhhc----c---C-CChhhHHHHHHHcCC
Q 001031 1092 VLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----E---L-ASDVDLEGIANMADG 1152 (1183)
Q Consensus 1092 VIaTTN~p-------~~Ld~aLlrRFd~vI~I~lPd~eeR~e----ILk~iL~k~----~---l-~~didl~~LA~~TeG 1152 (1183)
+|++|+.. ..+...+..|+ ..+.|.+|...+|.+ ++++++.+. + . ..+..+..|..+.=-
T Consensus 325 iI~~t~~~l~~~~~~~~f~~dL~~rl-~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WP 403 (509)
T PRK05022 325 VIAATNRDLREEVRAGRFRADLYHRL-SVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWP 403 (509)
T ss_pred EEEecCCCHHHHHHcCCccHHHHhcc-cccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCC
Confidence 99999763 34667777777 467788888777754 445555432 1 1 123334444444333
Q ss_pred CcHHHHHHHHHHHHHHhH
Q 001031 1153 YSGSDLKNLCVTAAHCPI 1170 (1183)
Q Consensus 1153 ySg~DL~~L~~~Aa~~Ai 1170 (1183)
.+.++|++++..|+..+-
T Consensus 404 GNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 404 GNVRELEHVISRAALLAR 421 (509)
T ss_pred CcHHHHHHHHHHHHHhcC
Confidence 456899999999887653
No 203
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.89 E-value=7.2e-09 Score=126.01 Aligned_cols=202 Identities=22% Similarity=0.264 Sum_probs=118.9
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s 1022 (1183)
.+|++++|....++.+.+.+.. + ......|||+|++||||+++|++|.+.. +.||+.++|..+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~-------~-----A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL-------Y-----ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH-------H-----hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 5688999999988888887753 1 1123579999999999999999998764 67999999987633
Q ss_pred c-----cccchHH--------HHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCC
Q 001031 1023 K-----WFGEGEK--------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1089 (1183)
Q Consensus 1023 ~-----~~GesE~--------~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~ 1089 (1183)
. .+|..+. .-..+|..| ..+.||||||+.| +...+..+.+++++-....-|-....+..
T Consensus 277 ~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~L-----p~~~Q~~Ll~~L~~~~~~r~g~~~~~~~d 348 (526)
T TIGR02329 277 SLLEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEM-----PLPLQTRLLRVLEEREVVRVGGTEPVPVD 348 (526)
T ss_pred hHHHHHhcCCcccccccccccccccchhhc---CCceEEecChHhC-----CHHHHHHHHHHHhcCcEEecCCCceeeec
Confidence 2 2232110 012233333 3489999999988 33333333333322111111111112345
Q ss_pred EEEEEecCCC-------CCCcHHHHhccCcEEEecCCCHHHHHH----HHHHHHhhcc----C-CChhhHHH-------H
Q 001031 1090 VLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKEE----L-ASDVDLEG-------I 1146 (1183)
Q Consensus 1090 VlVIaTTN~p-------~~Ld~aLlrRFd~vI~I~lPd~eeR~e----ILk~iL~k~~----l-~~didl~~-------L 1146 (1183)
+.+|++|+.. ..+...+..|+ ..+.+.+|...+|.+ ++.+++.+.. + ..+..+.. |
T Consensus 349 vRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L 427 (526)
T TIGR02329 349 VRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPL 427 (526)
T ss_pred ceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHH
Confidence 7899998763 23344555566 357788888777654 5556665421 1 11222222 2
Q ss_pred HHHcCCCcHHHHHHHHHHHHHH
Q 001031 1147 ANMADGYSGSDLKNLCVTAAHC 1168 (1183)
Q Consensus 1147 A~~TeGySg~DL~~L~~~Aa~~ 1168 (1183)
..+.=-.+.++|++++..++..
T Consensus 428 ~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 428 QRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HhCCCCchHHHHHHHHHHHHHh
Confidence 2222223457888888887764
No 204
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.88 E-value=1.4e-08 Score=114.83 Aligned_cols=147 Identities=20% Similarity=0.289 Sum_probs=97.6
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--------------------
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-------------------- 1009 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg-------------------- 1009 (1183)
++.+.+.....+...+.. .+ +-++.+||+||||+|||++|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~---------~~---~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALE---------SG---RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHh---------cC---CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 455666666666665542 11 2234599999999999999999999986
Q ss_pred ----CcEEEEecCccccccccchHHHHHHHHHHHhcc----CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcC
Q 001031 1010 ----ANFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG 1081 (1183)
Q Consensus 1010 ----~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~----~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldg 1081 (1183)
..++.++.++..... .....++.+-...... ..-||+|||+|.|. ....+.++..+..
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt------------~~A~nallk~lEe 135 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT------------EDAANALLKTLEE 135 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh------------HHHHHHHHHHhcc
Confidence 466777766543321 1233455544444333 35799999999883 1233444444433
Q ss_pred CcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHH
Q 001031 1082 LRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKI 1127 (1183)
Q Consensus 1082 l~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eI 1127 (1183)
.+.+..+|.+||.+..+-+.+++|+ ..+.|..|+...+...
T Consensus 136 ----p~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 136 ----PPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIAW 176 (325)
T ss_pred ----CCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHHH
Confidence 3467899999999999999999999 6788877654444433
No 205
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.88 E-value=7.4e-09 Score=122.82 Aligned_cols=201 Identities=21% Similarity=0.273 Sum_probs=131.0
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc-
Q 001031 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS- 1022 (1183)
Q Consensus 947 tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s- 1022 (1183)
.+.+++|....++++.+.+.. +......|||+|++||||..+|++|-... +.||+.+||..+-.
T Consensus 139 ~~~~liG~S~am~~l~~~i~k------------vA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAK------------VAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccCCceecCHHHHHHHHHHHH------------HhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 456899999999999887753 12233579999999999999999998776 67999999987533
Q ss_pred ----ccccchHHHHHHHHHHHhc--------cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCE
Q 001031 1023 ----KWFGEGEKYVKAVFSLASK--------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1090 (1183)
Q Consensus 1023 ----~~~GesE~~Ir~lF~~A~k--------~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~V 1090 (1183)
..||. -+..|..|.. ...+.||||||..| +-..|..+-+++++-....-|-...-+..|
T Consensus 207 l~ESELFGh----ekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~m-----pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdv 277 (464)
T COG2204 207 LLESELFGH----EKGAFTGAITRRIGRFEQANGGTLFLDEIGEM-----PLELQVKLLRVLQEREFERVGGNKPIKVDV 277 (464)
T ss_pred HHHHHhhcc----cccCcCCcccccCcceeEcCCceEEeeccccC-----CHHHHHHHHHHHHcCeeEecCCCcccceee
Confidence 23442 1223333321 23489999999987 333444444555543333333333345789
Q ss_pred EEEEecCCC-------CCCcHHHHhccCcEEEecCCCHHHHHH----HHHHHHhh----ccC-CChhhHHHHHHHcCCC-
Q 001031 1091 LVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAK----EEL-ASDVDLEGIANMADGY- 1153 (1183)
Q Consensus 1091 lVIaTTN~p-------~~Ld~aLlrRFd~vI~I~lPd~eeR~e----ILk~iL~k----~~l-~~didl~~LA~~TeGy- 1153 (1183)
.||++||.. ..+-+.+.-|+ .++.+.+|...+|.+ ++++++.+ .+. ...+.-+.++.+..--
T Consensus 278 RiIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~W 356 (464)
T COG2204 278 RIIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDW 356 (464)
T ss_pred EEEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCC
Confidence 999999873 34556666688 689999999888765 55666654 211 2334444555444422
Q ss_pred --cHHHHHHHHHHHHHHh
Q 001031 1154 --SGSDLKNLCVTAAHCP 1169 (1183)
Q Consensus 1154 --Sg~DL~~L~~~Aa~~A 1169 (1183)
+.++|+|++..++..+
T Consensus 357 PGNVREL~N~ver~~il~ 374 (464)
T COG2204 357 PGNVRELENVVERAVILS 374 (464)
T ss_pred ChHHHHHHHHHHHHHhcC
Confidence 3467788877777654
No 206
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.88 E-value=8.1e-09 Score=108.53 Aligned_cols=115 Identities=26% Similarity=0.355 Sum_probs=73.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCC----cEEEEecCccccccccchHHHHHHHHHHH----hccCCeEEEEeCCc
Q 001031 982 KPCKGILLFGPPGTGKTMLAKAVATEAGA----NFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVD 1053 (1183)
Q Consensus 982 kP~~gVLL~GPPGTGKT~LAkAIA~eLg~----pfi~I~~s~L~s~~~GesE~~Ir~lF~~A----~k~~PsILfIDEID 1053 (1183)
+|...+||.||+|+|||.||+++|..+.. +++.++++++... ++.+..+..++..+ ......||||||||
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEid 78 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEID 78 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGG
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHh
Confidence 35567999999999999999999999996 9999999987651 11111222222211 11122499999999
Q ss_pred ccccCCCCcchHHHHHHHHHHHHHhhcCCccc-------CCCCEEEEEecCCC
Q 001031 1054 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKERVLVLAATNRP 1099 (1183)
Q Consensus 1054 ~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k-------~~~~VlVIaTTN~p 1099 (1183)
...+. ........-..+.+.|+..+++-.-. +-.+++||+|+|--
T Consensus 79 Ka~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 79 KAHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp GCSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred hcccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 98654 22222333345667777777543221 23679999999864
No 207
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.88 E-value=2.1e-08 Score=118.65 Aligned_cols=143 Identities=22% Similarity=0.290 Sum_probs=85.6
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--c-----EEEEecC--
Q 001031 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--N-----FINISMS-- 1018 (1183)
Q Consensus 948 fdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~--p-----fi~I~~s-- 1018 (1183)
++++.+.+...+.+...+. ..++++|+||||||||++|+.+|..+.. . ++.+...
T Consensus 174 l~d~~i~e~~le~l~~~L~----------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsyS 237 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT----------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYS 237 (459)
T ss_pred hhcccCCHHHHHHHHHHHh----------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeeccccc
Confidence 3455555666666655443 1257999999999999999999998842 1 2222211
Q ss_pred --cccccc----ccch--HHHHHHHHHHHhcc--CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcC-------
Q 001031 1019 --SITSKW----FGEG--EKYVKAVFSLASKI--APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDG------- 1081 (1183)
Q Consensus 1019 --~L~s~~----~Ges--E~~Ir~lF~~A~k~--~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldg------- 1081 (1183)
+++..+ .|.. ......+...|... .|.|||||||++-- ..+++.+++..++.
T Consensus 238 YeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan-----------i~kiFGel~~lLE~~~rg~~~ 306 (459)
T PRK11331 238 YEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN-----------LSKVFGEVMMLMEHDKRGENW 306 (459)
T ss_pred HHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC-----------HHHhhhhhhhhcccccccccc
Confidence 122111 1100 11233444556543 47999999998641 12233333333321
Q ss_pred -C----------cccCCCCEEEEEecCCCC----CCcHHHHhccCcEEEecC
Q 001031 1082 -L----------RTKDKERVLVLAATNRPF----DLDEAVVRRLPRRLMVNL 1118 (1183)
Q Consensus 1082 -l----------~~k~~~~VlVIaTTN~p~----~Ld~aLlrRFd~vI~I~l 1118 (1183)
+ .-.-+.++.||||+|..+ .+|.|++||| ..+.+.+
T Consensus 307 ~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF-~fi~i~p 357 (459)
T PRK11331 307 SVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRF-SFIDIEP 357 (459)
T ss_pred ceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhh-heEEecC
Confidence 0 012357899999999876 7999999999 4566654
No 208
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=4.7e-08 Score=114.19 Aligned_cols=202 Identities=22% Similarity=0.289 Sum_probs=130.6
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----cEEEEecCcccccc
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-----NFINISMSSITSKW 1024 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-----pfi~I~~s~L~s~~ 1024 (1183)
.+.+.+...+++...+...+. + . .|.++++||+||||||.+++.+++++.- .++++||..+.+.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~-------~--~-~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR-------G--E-RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc-------C--C-CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 478889999999887654332 1 2 2356999999999999999999998833 38889986533221
Q ss_pred ---------------ccch-HHHHHHHHHHHhc-cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCC
Q 001031 1025 ---------------FGEG-EKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 1087 (1183)
Q Consensus 1025 ---------------~Ges-E~~Ir~lF~~A~k-~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~ 1087 (1183)
.|.. ......++....+ ...-||+|||+|.|..+.. .++-.|... .....
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~----~~~~~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRA----PGENK 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhh----ccccc
Confidence 1111 2223333333333 3457999999999964432 222233222 22225
Q ss_pred CCEEEEEecCCC---CCCcHHHHhccC-cEEEecCCCHHHHHHHHHHHHhhc---cCCChhhHHHHH---HHcCCCcHHH
Q 001031 1088 ERVLVLAATNRP---FDLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIA---NMADGYSGSD 1157 (1183)
Q Consensus 1088 ~~VlVIaTTN~p---~~Ld~aLlrRFd-~vI~I~lPd~eeR~eILk~iL~k~---~l~~didl~~LA---~~TeGySg~D 1157 (1183)
.++.+|+.+|.. +.|++.+.++|. ..|.|++.+.+|...|++...... ....+..+..+| ....| ..+-
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~ 233 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARK 233 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHH
Confidence 778999999875 578888888764 468899999999999999877642 222333344444 33334 4455
Q ss_pred HHHHHHHHHHHhHHHHHh
Q 001031 1158 LKNLCVTAAHCPIREILE 1175 (1183)
Q Consensus 1158 L~~L~~~Aa~~Aire~le 1175 (1183)
-..+|+.|+..|-++...
T Consensus 234 aidilr~A~eiAe~~~~~ 251 (366)
T COG1474 234 AIDILRRAGEIAEREGSR 251 (366)
T ss_pred HHHHHHHHHHHHHhhCCC
Confidence 556788888888766543
No 209
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.87 E-value=8.4e-10 Score=118.54 Aligned_cols=46 Identities=43% Similarity=0.666 Sum_probs=36.2
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001031 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 947 tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
+|.||.|++.+|..|.-... + .++|||+||||||||++|+.+...+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G-----~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G-----GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C-----C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C-----CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999976553 1 2689999999999999999998765
No 210
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=4.9e-08 Score=112.59 Aligned_cols=153 Identities=13% Similarity=0.097 Sum_probs=102.0
Q ss_pred CcccccC-cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-E------E----
Q 001031 947 TFDDIGA-LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-I------N---- 1014 (1183)
Q Consensus 947 tfdDI~G-le~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pf-i------~---- 1014 (1183)
.|+.|.| ++.+++.|...+.. .+.++.+||+||+|+||+++|+++|+.+-++- . .
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c 69 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC 69 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence 4677777 88899988887752 34456789999999999999999999874321 0 0
Q ss_pred -----EecCccccccc-cc--hHHHHHHHHHHHh----ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCC
Q 001031 1015 -----ISMSSITSKWF-GE--GEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1082 (1183)
Q Consensus 1015 -----I~~s~L~s~~~-Ge--sE~~Ir~lF~~A~----k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl 1082 (1183)
-+.+++.--.. |. .-..++.+...+. .....|++|||+|.+- ....+.|+..++.
T Consensus 70 ~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~------------~~a~NaLLK~LEE- 136 (329)
T PRK08058 70 KRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT------------ASAANSLLKFLEE- 136 (329)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC------------HHHHHHHHHHhcC-
Confidence 00011110000 11 1234555444333 2234699999999871 2244566666655
Q ss_pred cccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHH
Q 001031 1083 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIR 1129 (1183)
Q Consensus 1083 ~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk 1129 (1183)
++..+++|.+|+.+..|.+++++|+ .++.+..|+.++..++++
T Consensus 137 ---Pp~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 137 ---PSGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred ---CCCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHH
Confidence 3356788888888899999999999 789999999888766664
No 211
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.87 E-value=4.6e-08 Score=110.91 Aligned_cols=73 Identities=21% Similarity=0.214 Sum_probs=55.9
Q ss_pred CCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHH
Q 001031 1099 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIRE 1172 (1183)
Q Consensus 1099 p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire 1172 (1183)
|+-++..+++|+ .+|...+.+.++.++|++.......+. ++..++.|+..-.--|-+---+|+.-|...|-++
T Consensus 342 PhGIP~DlLDRl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r 415 (450)
T COG1224 342 PHGIPLDLLDRL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR 415 (450)
T ss_pred CCCCCHhhhhhe-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh
Confidence 778899999998 778888889999999999988776654 5666788887766566666666666666666555
No 212
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=4.1e-08 Score=113.16 Aligned_cols=157 Identities=18% Similarity=0.201 Sum_probs=103.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-------E---------EecCccccccc-----cchHHHHHHHHHHHh
Q 001031 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI-------N---------ISMSSITSKWF-----GEGEKYVKAVFSLAS 1040 (1183)
Q Consensus 982 kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi-------~---------I~~s~L~s~~~-----GesE~~Ir~lF~~A~ 1040 (1183)
+.++.+||+||+|+||+++|+++|+.+.+.-- . -+.+++..-.. .-.-..++.+...+.
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~ 99 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVV 99 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999999999854210 0 00111110000 012345666555544
Q ss_pred c----cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEe
Q 001031 1041 K----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMV 1116 (1183)
Q Consensus 1041 k----~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I 1116 (1183)
. ....|++||++|.|- ....|.|+..++. ++.++++|.+|+.++.|.+++++|+ ..+.|
T Consensus 100 ~~~~~~~~kv~iI~~a~~m~------------~~aaNaLLK~LEE----Pp~~~~fiL~t~~~~~ll~TI~SRc-~~~~~ 162 (328)
T PRK05707 100 QTAQLGGRKVVLIEPAEAMN------------RNAANALLKSLEE----PSGDTVLLLISHQPSRLLPTIKSRC-QQQAC 162 (328)
T ss_pred hccccCCCeEEEECChhhCC------------HHHHHHHHHHHhC----CCCCeEEEEEECChhhCcHHHHhhc-eeeeC
Confidence 3 345699999999882 2344566666654 3367899999999999999999999 67999
Q ss_pred cCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHH
Q 001031 1117 NLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDL 1158 (1183)
Q Consensus 1117 ~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL 1158 (1183)
..|+.++..+.+..... ...+.+...++.+..|-.+..+
T Consensus 163 ~~~~~~~~~~~L~~~~~---~~~~~~~~~~l~la~Gsp~~A~ 201 (328)
T PRK05707 163 PLPSNEESLQWLQQALP---ESDERERIELLTLAGGSPLRAL 201 (328)
T ss_pred CCcCHHHHHHHHHHhcc---cCChHHHHHHHHHcCCCHHHHH
Confidence 99999988877765431 1234445566777777554433
No 213
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3.2e-08 Score=114.18 Aligned_cols=72 Identities=33% Similarity=0.600 Sum_probs=62.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-ccccch-HHHHHHHHHHH----hccCCeEEEEeCCcccc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG-EKYVKAVFSLA----SKIAPSVVFVDEVDSML 1056 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s-~~~Ges-E~~Ir~lF~~A----~k~~PsILfIDEID~Ll 1056 (1183)
.+|||.||+|+|||.||+.+|+-++.||..++|.+|.. .|+|+. |..|..++..| .+.+.+|+||||+|.+.
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~ 304 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKIT 304 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhc
Confidence 47999999999999999999999999999999999875 577765 66777888776 34567999999999997
No 214
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.86 E-value=1.6e-08 Score=123.27 Aligned_cols=201 Identities=22% Similarity=0.258 Sum_probs=117.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~ 1021 (1183)
..+|++++|.....+.+.+.+... . .....|||+|++||||+++|++|-... +.||+.++|+.+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~-------A-----~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKL-------A-----MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHH-------h-----CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 468999999988877777665421 1 122469999999999999999986654 5799999998764
Q ss_pred cc-----cccchH-------HHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCc--ccCC
Q 001031 1022 SK-----WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR--TKDK 1087 (1183)
Q Consensus 1022 s~-----~~GesE-------~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~--~k~~ 1087 (1183)
.. .+|... ..-.++|..| ..+.|||||||.| ++..+..+.++++.-. +.... ...+
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L-----~~~~Q~~Ll~~l~~~~--~~~~g~~~~~~ 337 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEM-----SPRMQAKLLRFLNDGT--FRRVGEDHEVH 337 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhC-----CHHHHHHHHHHHhcCC--cccCCCCccee
Confidence 32 122110 0012234433 3489999999988 3233333322222110 11111 1113
Q ss_pred CCEEEEEecCCC-------CCCcHHHHhccCcEEEecCCCHHHHHH----HHHHHHhh----ccC----CChhhHHHHHH
Q 001031 1088 ERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAK----EEL----ASDVDLEGIAN 1148 (1183)
Q Consensus 1088 ~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~I~lPd~eeR~e----ILk~iL~k----~~l----~~didl~~LA~ 1148 (1183)
.++.||++|+.. ..+.+.+..|+ ..+.+.+|...+|.+ ++++++.+ .+. .++..+..|..
T Consensus 338 ~~vRiI~st~~~l~~l~~~g~f~~dL~~rL-~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~ 416 (520)
T PRK10820 338 VDVRVICATQKNLVELVQKGEFREDLYYRL-NVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTR 416 (520)
T ss_pred eeeEEEEecCCCHHHHHHcCCccHHHHhhc-CeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhc
Confidence 568899988653 34566777887 458888888777763 34444443 221 12222333333
Q ss_pred HcCCCcHHHHHHHHHHHHHH
Q 001031 1149 MADGYSGSDLKNLCVTAAHC 1168 (1183)
Q Consensus 1149 ~TeGySg~DL~~L~~~Aa~~ 1168 (1183)
+.=.-..++|++++..|+..
T Consensus 417 y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 417 YGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 32122457888888777754
No 215
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.85 E-value=1.3e-09 Score=109.03 Aligned_cols=118 Identities=31% Similarity=0.416 Sum_probs=67.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC-ccc-cccccc----hHHHHHHHHHHHh-ccCCeEEEEeCCcccccC
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMS-SIT-SKWFGE----GEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGR 1058 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s-~L~-s~~~Ge----sE~~Ir~lF~~A~-k~~PsILfIDEID~Ll~~ 1058 (1183)
+|||+|+||+|||++|+++|+.++..|.++.+. +++ ++..|. .+. ..|...+ ..-..|+++|||.+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEiNra--- 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEINRA--- 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETGGGS---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeecccccC---
Confidence 589999999999999999999999999988763 322 111111 000 0000000 001259999999865
Q ss_pred CCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC-----CCcHHHHhccC
Q 001031 1059 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF-----DLDEAVVRRLP 1111 (1183)
Q Consensus 1059 r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~-----~Ld~aLlrRFd 1111 (1183)
.+..+.++-+++.+....+++....-+.+++||||.|+.+ .|++++++||-
T Consensus 75 --ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 75 --PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp ---HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred --CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 5556666666666666666666655678899999999865 78999999983
No 216
>PRK04132 replication factor C small subunit; Provisional
Probab=98.85 E-value=4e-08 Score=124.20 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=116.5
Q ss_pred CCCceEEEEc--CCCChHHHHHHHHHHHh-----CCcEEEEecCccccccccchHHHHHHHHHHHhccC------CeEEE
Q 001031 982 KPCKGILLFG--PPGTGKTMLAKAVATEA-----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIA------PSVVF 1048 (1183)
Q Consensus 982 kP~~gVLL~G--PPGTGKT~LAkAIA~eL-----g~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~------PsILf 1048 (1183)
-|.-+-++.| |++.|||++|++||+++ +.+++++++++..+ ...++.+...+.... ..|+|
T Consensus 562 ~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvI 635 (846)
T PRK04132 562 VPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIF 635 (846)
T ss_pred cCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEE
Confidence 3445567788 99999999999999998 56899999987432 124555544433222 36999
Q ss_pred EeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHH
Q 001031 1049 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKII 1128 (1183)
Q Consensus 1049 IDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eIL 1128 (1183)
|||+|.| +... .+.|+..++. .+..+.+|++||.++.+.+++++|+ ..+.|..|+.++....+
T Consensus 636 IDEaD~L-----t~~A-------QnALLk~lEe----p~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L 698 (846)
T PRK04132 636 LDEADAL-----TQDA-------QQALRRTMEM----FSSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRL 698 (846)
T ss_pred EECcccC-----CHHH-------HHHHHHHhhC----CCCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHH
Confidence 9999998 2222 2334444433 2367899999999999999999999 78999999999999999
Q ss_pred HHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHH
Q 001031 1129 RVILAKEELA-SDVDLEGIANMADGYSGSDLKNL 1161 (1183)
Q Consensus 1129 k~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L 1161 (1183)
+.++.++++. ++..+..|+..++|--...|..|
T Consensus 699 ~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 699 RYIAENEGLELTEEGLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9998876654 56678999999988665555444
No 217
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=4.6e-07 Score=114.30 Aligned_cols=128 Identities=23% Similarity=0.323 Sum_probs=91.1
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCC--CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc--
Q 001031 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTK--PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-- 1021 (1183)
Q Consensus 949 dDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~k--P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~-- 1021 (1183)
..|+|++++...+-+.|... +.++.+ |...+||.||.|+|||-||+++|..+ .-.++.++++++.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~s--------r~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~ev 633 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRS--------RAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEV 633 (898)
T ss_pred hhccchHHHHHHHHHHHHhh--------hcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhh
Confidence 35889999999998888752 223333 66779999999999999999999998 4578999998632
Q ss_pred ----c---ccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccC-------C
Q 001031 1022 ----S---KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD-------K 1087 (1183)
Q Consensus 1022 ----s---~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~-------~ 1087 (1183)
+ .|.|.. ...++....++.+-+||+|||||.- ...+++.|+..++.....+ -
T Consensus 634 skligsp~gyvG~e--~gg~LteavrrrP~sVVLfdeIEkA------------h~~v~n~llq~lD~GrltDs~Gr~Vd~ 699 (898)
T KOG1051|consen 634 SKLIGSPPGYVGKE--EGGQLTEAVKRRPYSVVLFEEIEKA------------HPDVLNILLQLLDRGRLTDSHGREVDF 699 (898)
T ss_pred hhccCCCcccccch--hHHHHHHHHhcCCceEEEEechhhc------------CHHHHHHHHHHHhcCccccCCCcEeec
Confidence 2 134432 3445666667777799999999853 2345566666665443322 3
Q ss_pred CCEEEEEecCC
Q 001031 1088 ERVLVLAATNR 1098 (1183)
Q Consensus 1088 ~~VlVIaTTN~ 1098 (1183)
.+++||+|+|.
T Consensus 700 kN~I~IMTsn~ 710 (898)
T KOG1051|consen 700 KNAIFIMTSNV 710 (898)
T ss_pred cceEEEEeccc
Confidence 67999999864
No 218
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.84 E-value=9.6e-08 Score=109.89 Aligned_cols=104 Identities=20% Similarity=0.302 Sum_probs=58.4
Q ss_pred CeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCC------------CCCCcHHHHhccC
Q 001031 1044 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR------------PFDLDEAVVRRLP 1111 (1183)
Q Consensus 1044 PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~------------p~~Ld~aLlrRFd 1111 (1183)
|+||||||+|.| +-.... .++..+ .. +-.+ +||.+||+ |+-++..|++|+
T Consensus 279 pGVLFIDEvHmL-----DiEcFs----fLnral---Es----~~sP-iiIlATNRg~~~irGt~~~sphGiP~DlLDRl- 340 (398)
T PF06068_consen 279 PGVLFIDEVHML-----DIECFS----FLNRAL---ES----ELSP-IIILATNRGITKIRGTDIISPHGIPLDLLDRL- 340 (398)
T ss_dssp E-EEEEESGGGS-----BHHHHH----HHHHHH---TS----TT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTE-
T ss_pred cceEEecchhhc-----cHHHHH----HHHHHh---cC----CCCc-EEEEecCceeeeccCccCcCCCCCCcchHhhc-
Confidence 889999999987 211122 222222 11 1234 45555663 667888999999
Q ss_pred cEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHH
Q 001031 1112 RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1165 (1183)
Q Consensus 1112 ~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~A 1165 (1183)
.+|...+.+.++-.+|++..++.+.+. ++..++.|+......+-+---+|+..|
T Consensus 341 lII~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a 395 (398)
T PF06068_consen 341 LIIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPA 395 (398)
T ss_dssp EEEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHH
T ss_pred EEEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhh
Confidence 788999999999999999999887765 444566666555444555444444443
No 219
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.83 E-value=2.7e-08 Score=124.02 Aligned_cols=202 Identities=18% Similarity=0.231 Sum_probs=119.9
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS 1022 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s 1022 (1183)
.+|++++|.....+.+.+.+.... .....|||+|++||||+++|++|.+.. +.||+.++|..+..
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a------------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAA------------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHh------------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 468899999888877777665311 122469999999999999999998875 57999999987532
Q ss_pred -----ccccchH----HHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEE
Q 001031 1023 -----KWFGEGE----KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1183)
Q Consensus 1023 -----~~~GesE----~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVI 1093 (1183)
.++|... ......|.. ...++||||||+.| +...+..+.+++++-...--+-....+.++.+|
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l-----~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI 461 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYL-----SPELQSALLQVLKTGVITRLDSRRLIPVDVRVI 461 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEE
Confidence 2333210 000012222 24589999999988 222333332222211100001000112368899
Q ss_pred EecCCC-------CCCcHHHHhccCcEEEecCCCHHHHHH----HHHHHHhhc----c--C-CChhhHHHHHHHcCCCcH
Q 001031 1094 AATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----E--L-ASDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1094 aTTN~p-------~~Ld~aLlrRFd~vI~I~lPd~eeR~e----ILk~iL~k~----~--l-~~didl~~LA~~TeGySg 1155 (1183)
+||+.. ..+...+..|+ ..+.|.+|...+|.+ ++++++.+. . + .++..+..|..+.=.-..
T Consensus 462 ~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNv 540 (638)
T PRK11388 462 ATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGND 540 (638)
T ss_pred EeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChH
Confidence 998763 34555566677 468888998887753 455555432 1 1 133334555544423456
Q ss_pred HHHHHHHHHHHHH
Q 001031 1156 SDLKNLCVTAAHC 1168 (1183)
Q Consensus 1156 ~DL~~L~~~Aa~~ 1168 (1183)
++|+++++.|+..
T Consensus 541 reL~~~l~~~~~~ 553 (638)
T PRK11388 541 FELRSVIENLALS 553 (638)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887764
No 220
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.82 E-value=9.3e-09 Score=124.96 Aligned_cols=174 Identities=22% Similarity=0.274 Sum_probs=100.2
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc-EEEE---ecCccccccc
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-FINI---SMSSITSKWF 1025 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p-fi~I---~~s~L~s~~~ 1025 (1183)
+|.|++.++..+.-.+.--. ......+...+...+|||+|+||||||++|+++++.+... |+.. ++..+.....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~--~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGV--HKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred cccCcHHHHHHHHHHHhCCC--ccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 68899998877754443210 0001111112233479999999999999999999987533 3221 2212211111
Q ss_pred cch---HHHH-HHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhh--cCCcccCCCCEEEEEecCCC
Q 001031 1026 GEG---EKYV-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRP 1099 (1183)
Q Consensus 1026 Ges---E~~I-r~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~L--dgl~~k~~~~VlVIaTTN~p 1099 (1183)
... +..+ .+.+. ....++++|||+|.+ ++..+..+..++++-...+ .|....-+.++.||||+|+.
T Consensus 282 ~~~~~g~~~~~~G~l~---~A~~Gil~iDEi~~l-----~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~ 353 (509)
T smart00350 282 RDPETREFTLEGGALV---LADNGVCCIDEFDKM-----DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPI 353 (509)
T ss_pred EccCcceEEecCccEE---ecCCCEEEEechhhC-----CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCC
Confidence 000 0000 01111 224589999999988 2223333322222111111 23333345789999999975
Q ss_pred C-------------CCcHHHHhccCcEEEe-cCCCHHHHHHHHHHHHh
Q 001031 1100 F-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILA 1133 (1183)
Q Consensus 1100 ~-------------~Ld~aLlrRFd~vI~I-~lPd~eeR~eILk~iL~ 1133 (1183)
+ .|++++++||+..+.+ +.|+.+.+.+|.++++.
T Consensus 354 ~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 354 GGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred CcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 2 6899999999876554 78999999999888654
No 221
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.74 E-value=1.1e-08 Score=107.37 Aligned_cols=140 Identities=21% Similarity=0.316 Sum_probs=77.0
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc----
Q 001031 951 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK---- 1023 (1183)
Q Consensus 951 I~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~---- 1023 (1183)
|+|.+..++.+.+.+.... ..+..|||+|++||||+++|++|-+.. +.||+.++|+.+...
T Consensus 1 liG~s~~m~~~~~~~~~~a------------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~ 68 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA------------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLES 68 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT------------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh------------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhh
Confidence 3455666666666554211 122579999999999999999998865 579999999876432
Q ss_pred -cccchH-------HHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEe
Q 001031 1024 -WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1095 (1183)
Q Consensus 1024 -~~GesE-------~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaT 1095 (1183)
.+|... ..-..+|..|.. ++||||||+.| ++..+..+-+++++-....-+-......+++||++
T Consensus 69 ~LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~s 140 (168)
T PF00158_consen 69 ELFGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDL-----PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAS 140 (168)
T ss_dssp HHHEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEE
T ss_pred hhhccccccccccccccCCceeeccc---eEEeecchhhh-----HHHHHHHHHHHHhhchhccccccccccccceEEee
Confidence 223211 111245555554 89999999998 33333333222222111111111112357999999
Q ss_pred cCCC-------CCCcHHHHhcc
Q 001031 1096 TNRP-------FDLDEAVVRRL 1110 (1183)
Q Consensus 1096 TN~p-------~~Ld~aLlrRF 1110 (1183)
|+.. ..+.+.|..|+
T Consensus 141 t~~~l~~~v~~g~fr~dLy~rL 162 (168)
T PF00158_consen 141 TSKDLEELVEQGRFREDLYYRL 162 (168)
T ss_dssp ESS-HHHHHHTTSS-HHHHHHH
T ss_pred cCcCHHHHHHcCCChHHHHHHh
Confidence 9863 24444555454
No 222
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.73 E-value=5.5e-08 Score=117.63 Aligned_cols=153 Identities=25% Similarity=0.306 Sum_probs=88.7
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC----------------
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---------------- 1009 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg---------------- 1009 (1183)
..|+++.|+..+++.+.-.+. ...+++|.||||+|||+|++.++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~----------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~ 252 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA----------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSL 252 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc----------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccc
Confidence 478999999988776654321 235799999999999999999986441
Q ss_pred ------------CcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHH
Q 001031 1010 ------------ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1183)
Q Consensus 1010 ------------~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~ 1077 (1183)
.||....++......+|.....-.+.+..| ..++||||||+.+ +...++.+...++....
T Consensus 253 ~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~-----~~~~~~~L~~~LE~~~v 324 (499)
T TIGR00368 253 VGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEF-----KRSVLDALREPIEDGSI 324 (499)
T ss_pred hhhhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhC-----CHHHHHHHHHHHHcCcE
Confidence 122222221111111111111111233333 3489999999977 22223333332222111
Q ss_pred hh--cCCcccCCCCEEEEEecCCC-----C------------------CCcHHHHhccCcEEEecCCCHH
Q 001031 1078 NW--DGLRTKDKERVLVLAATNRP-----F------------------DLDEAVVRRLPRRLMVNLPDAP 1122 (1183)
Q Consensus 1078 ~L--dgl~~k~~~~VlVIaTTN~p-----~------------------~Ld~aLlrRFd~vI~I~lPd~e 1122 (1183)
.+ .+.....+.++.+|+++|+. . .+...+++||+..+.++.++..
T Consensus 325 ~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 325 SISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred EEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 11 11111224679999999863 1 4788999999988888876644
No 223
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.73 E-value=3.7e-08 Score=117.45 Aligned_cols=159 Identities=19% Similarity=0.213 Sum_probs=89.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecC-cccccccc
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMS-SITSKWFG 1026 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~--pfi~I~~s-~L~s~~~G 1026 (1183)
.|.|.+++++.+...+. ...+|||+||||||||++|++|+...+. +|..+.+. ......+|
T Consensus 21 ~i~gre~vI~lll~aal----------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG 84 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL----------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 84 (498)
T ss_pred hccCcHHHHHHHHHHHc----------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcC
Confidence 46777888877765543 1247999999999999999999998742 44443332 11123333
Q ss_pred ch-HHHH--HHHHHHHhcc---CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC
Q 001031 1027 EG-EKYV--KAVFSLASKI---APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1183)
Q Consensus 1027 es-E~~I--r~lF~~A~k~---~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1183)
.. -... .+-|...... ...+||+|||.++ ++..+..+-.++++-.....+-..+-+.++++++| |...
T Consensus 85 ~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~AT-N~LP 158 (498)
T PRK13531 85 PLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTAS-NELP 158 (498)
T ss_pred cHHHhhhhhcCchhhhcCCccccccEEeecccccC-----CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEEC-CCCc
Confidence 21 0000 1122211110 2249999999865 33334433333333322222322222344555555 6422
Q ss_pred ---CCcHHHHhccCcEEEecCCC-HHHHHHHHHH
Q 001031 1101 ---DLDEAVVRRLPRRLMVNLPD-APNREKIIRV 1130 (1183)
Q Consensus 1101 ---~Ld~aLlrRFd~vI~I~lPd-~eeR~eILk~ 1130 (1183)
...+++..||...+.++.|+ .++-.+++..
T Consensus 159 E~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 159 EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTS 192 (498)
T ss_pred ccCCchHHhHhhEEEEEECCCCCchHHHHHHHHc
Confidence 34469999997788888886 4555666654
No 224
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.72 E-value=6.8e-08 Score=119.29 Aligned_cols=142 Identities=19% Similarity=0.296 Sum_probs=91.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCccccccccchHHHHHHHHHH---------HhccCCeEEEEeCC
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGEKYVKAVFSL---------ASKIAPSVVFVDEV 1052 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eLg--~pfi~I~~s~L~s~~~GesE~~Ir~lF~~---------A~k~~PsILfIDEI 1052 (1183)
..+|||.|+||||||++|++|+..+. .+|+.+.........+|... +...+.. ..+...++||||||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~id--l~~~~~~g~~~~~~G~L~~A~~GvL~lDEi 93 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGID--VEESLAGGQRVTQPGLLDEAPRGVLYVDMA 93 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchh--hhhhhhcCcccCCCCCeeeCCCCcEeccch
Confidence 35799999999999999999999875 46888875433333444321 1111100 01223479999999
Q ss_pred cccccCCCCcchHHHHHHHHHHHHHhh--cCCcccCCCCEEEEEecCCCC---CCcHHHHhccCcEEEec-CCCHHHHHH
Q 001031 1053 DSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRPF---DLDEAVVRRLPRRLMVN-LPDAPNREK 1126 (1183)
Q Consensus 1053 D~Ll~~r~~~~~~e~l~~il~~LL~~L--dgl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRFd~vI~I~-lPd~eeR~e 1126 (1183)
+.+ ++..+..+..++++-...+ .|.....+.+++||+|+|..+ .|.++++.||...+.+. +|+.++|.+
T Consensus 94 ~rl-----~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~e 168 (589)
T TIGR02031 94 NLL-----DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVE 168 (589)
T ss_pred hhC-----CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHH
Confidence 988 3233333322222211111 133333346789999999865 79999999999877664 567888999
Q ss_pred HHHHHH
Q 001031 1127 IIRVIL 1132 (1183)
Q Consensus 1127 ILk~iL 1132 (1183)
|++.++
T Consensus 169 il~~~~ 174 (589)
T TIGR02031 169 IVRRER 174 (589)
T ss_pred HHHHHH
Confidence 998765
No 225
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.69 E-value=5.9e-07 Score=103.44 Aligned_cols=171 Identities=12% Similarity=0.111 Sum_probs=108.4
Q ss_pred cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-------EE---------ec
Q 001031 954 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI-------NI---------SM 1017 (1183)
Q Consensus 954 le~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi-------~I---------~~ 1017 (1183)
+....+.|...+.. .+-++.+||+||.|+||+++|+++|+.+.+.-- .+ +.
T Consensus 7 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~H 73 (325)
T PRK06871 7 LQPTYQQITQAFQQ-------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNH 73 (325)
T ss_pred hHHHHHHHHHHHHc-------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 34555666665542 344578999999999999999999998844210 00 01
Q ss_pred Ccccccc--cc--chHHHHHHHHHHHhc----cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCC
Q 001031 1018 SSITSKW--FG--EGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1089 (1183)
Q Consensus 1018 s~L~s~~--~G--esE~~Ir~lF~~A~k----~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~ 1089 (1183)
+++..-. -+ -....++.+-..+.. ..--|++||++|.|- ....|.|+..++. ++.+
T Consensus 74 PD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~------------~~AaNaLLKtLEE----Pp~~ 137 (325)
T PRK06871 74 PDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLT------------EAAANALLKTLEE----PRPN 137 (325)
T ss_pred CCEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhC------------HHHHHHHHHHhcC----CCCC
Confidence 1111000 01 123355655444432 334699999999882 2344566666654 4577
Q ss_pred EEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHH
Q 001031 1090 VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDL 1158 (1183)
Q Consensus 1090 VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL 1158 (1183)
+++|.+|+.++.|.+++++|+ ..+.+..|+.++..+.+..... ........++..+.|..+..+
T Consensus 138 ~~fiL~t~~~~~llpTI~SRC-~~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l~~g~p~~A~ 201 (325)
T PRK06871 138 TYFLLQADLSAALLPTIYSRC-QTWLIHPPEEQQALDWLQAQSS----AEISEILTALRINYGRPLLAL 201 (325)
T ss_pred eEEEEEECChHhCchHHHhhc-eEEeCCCCCHHHHHHHHHHHhc----cChHHHHHHHHHcCCCHHHHH
Confidence 899999999999999999999 7889999998888777765431 122234455556666444333
No 226
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.69 E-value=6.4e-08 Score=115.18 Aligned_cols=200 Identities=19% Similarity=0.237 Sum_probs=116.5
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc
Q 001031 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW 1024 (1183)
Q Consensus 948 fdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~ 1024 (1183)
+.++.|.....+.+.+.+.. + ......++|+|++||||+++|+++.... +.+|+.++|..+...+
T Consensus 138 ~~~lig~s~~~~~l~~~i~~-------~-----a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~ 205 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEK-------I-----APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENL 205 (445)
T ss_pred ccceeecCHHHHHHHHHHHH-------H-----hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHH
Confidence 33556666666666555432 0 1122569999999999999999998775 5789999998763321
Q ss_pred -----ccchH-------HHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEE
Q 001031 1025 -----FGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1183)
Q Consensus 1025 -----~GesE-------~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlV 1092 (1183)
+|... ....+.|. ....++||||||+.| +...+..+.+++++-.....+.....+.++.+
T Consensus 206 ~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~~i~~l-----~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~ri 277 (445)
T TIGR02915 206 LESELFGYEKGAFTGAVKQTLGKIE---YAHGGTLFLDEIGDL-----PLNLQAKLLRFLQERVIERLGGREEIPVDVRI 277 (445)
T ss_pred HHHHhcCCCCCCcCCCccCCCCcee---ECCCCEEEEechhhC-----CHHHHHHHHHHHhhCeEEeCCCCceeeeceEE
Confidence 11100 00001111 234589999999988 32333333333222111111111112346899
Q ss_pred EEecCCC-------CCCcHHHHhccCcEEEecCCCHHHHHH----HHHHHHhhc----cC----CChhhHHHHHHHcCCC
Q 001031 1093 LAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----EL----ASDVDLEGIANMADGY 1153 (1183)
Q Consensus 1093 IaTTN~p-------~~Ld~aLlrRFd~vI~I~lPd~eeR~e----ILk~iL~k~----~l----~~didl~~LA~~TeGy 1153 (1183)
|+||+.. ..+.+.+..|+ ..+.|.+|...+|.+ ++++++.+. .. ..+..+..|..+.=-.
T Consensus 278 i~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpg 356 (445)
T TIGR02915 278 VCATNQDLKRMIAEGTFREDLFYRI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPG 356 (445)
T ss_pred EEecCCCHHHHHHcCCccHHHHHHh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCC
Confidence 9999764 45666777777 467888888888765 455555432 11 1333455555544334
Q ss_pred cHHHHHHHHHHHHHH
Q 001031 1154 SGSDLKNLCVTAAHC 1168 (1183)
Q Consensus 1154 Sg~DL~~L~~~Aa~~ 1168 (1183)
..++|++++..|+..
T Consensus 357 NvreL~~~i~~a~~~ 371 (445)
T TIGR02915 357 NVRELENKVKRAVIM 371 (445)
T ss_pred hHHHHHHHHHHHHHh
Confidence 568999999888864
No 227
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.69 E-value=7.9e-07 Score=98.48 Aligned_cols=174 Identities=16% Similarity=0.218 Sum_probs=103.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CcEEEEe--cCcc-----c---ccccc-----ch-HHHHHHH---H-HHHhccC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG-ANFINIS--MSSI-----T---SKWFG-----EG-EKYVKAV---F-SLASKIA 1043 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg-~pfi~I~--~s~L-----~---s~~~G-----es-E~~Ir~l---F-~~A~k~~ 1043 (1183)
.-++|+||+|+|||++++.+++.+. ..++.+. ...+ . ....| .. ......+ + .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3589999999999999999999875 2222211 1110 0 00111 11 1111222 1 2233556
Q ss_pred CeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCC--CCCC----cHHHHhccCcEEEec
Q 001031 1044 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR--PFDL----DEAVVRRLPRRLMVN 1117 (1183)
Q Consensus 1044 PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~--p~~L----d~aLlrRFd~vI~I~ 1117 (1183)
+.||+|||++.+- ... +..+.. +..........+.|+.+... ...+ ...+.+|+...+.++
T Consensus 124 ~~vliiDe~~~l~--------~~~----~~~l~~-l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~ 190 (269)
T TIGR03015 124 RALLVVDEAQNLT--------PEL----LEELRM-LSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLG 190 (269)
T ss_pred CeEEEEECcccCC--------HHH----HHHHHH-HhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCC
Confidence 7899999999771 111 112211 11111111233334444332 1111 234667887889999
Q ss_pred CCCHHHHHHHHHHHHhhcc-----CCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHH
Q 001031 1118 LPDAPNREKIIRVILAKEE-----LASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIRE 1172 (1183)
Q Consensus 1118 lPd~eeR~eILk~iL~k~~-----l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire 1172 (1183)
..+.++..+++...+...+ ...+..++.|+..+.|+. +.|..+|..|...+..+
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~ 249 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLE 249 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHc
Confidence 9999999999998886532 235567899999999986 45999999998887664
No 228
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.68 E-value=2.4e-07 Score=114.81 Aligned_cols=50 Identities=32% Similarity=0.455 Sum_probs=41.9
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN 1011 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p 1011 (1183)
.-|+++.|+++++..++..+.. ..+++|+||||||||++++++++.++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~----------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ----------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc----------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 4577899999999988877652 1389999999999999999999998543
No 229
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.68 E-value=6.3e-07 Score=99.08 Aligned_cols=185 Identities=20% Similarity=0.291 Sum_probs=128.8
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-C--CcEEEEecCc---
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-G--ANFINISMSS--- 1019 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-g--~pfi~I~~s~--- 1019 (1183)
.+++.+.+.++....|..+.. .....++|+|||+|+||-+.+.++.+++ | .+=..+...+
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~--------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~t 75 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSS--------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTT 75 (351)
T ss_pred chhhhcccHHHHHHHHHHhcc--------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEec
Confidence 356667777888887776543 1122589999999999999999999887 3 2211111111
Q ss_pred ----------cccc--------cccchH-HHHHHHHHHHhccC---------CeEEEEeCCcccccCCCCcchHHHHHHH
Q 001031 1020 ----------ITSK--------WFGEGE-KYVKAVFSLASKIA---------PSVVFVDEVDSMLGRRENPGEHEAMRKM 1071 (1183)
Q Consensus 1020 ----------L~s~--------~~GesE-~~Ir~lF~~A~k~~---------PsILfIDEID~Ll~~r~~~~~~e~l~~i 1071 (1183)
+.+. -.|.-. -.+..+.....+.+ -.|++|-|+|.| ....+.++++.
T Consensus 76 pS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L-----T~dAQ~aLRRT 150 (351)
T KOG2035|consen 76 PSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL-----TRDAQHALRRT 150 (351)
T ss_pred CCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh-----hHHHHHHHHHH
Confidence 1111 122222 23444444443332 259999999998 34556677777
Q ss_pred HHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHc
Q 001031 1072 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA 1150 (1183)
Q Consensus 1072 l~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~T 1150 (1183)
+.... ..+.+|..+|....+-+++++|+ ..+.++.|+.++...++...+.++++. +..-+..+|+.+
T Consensus 151 MEkYs-----------~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS 218 (351)
T KOG2035|consen 151 MEKYS-----------SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKS 218 (351)
T ss_pred HHHHh-----------cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHh
Confidence 76553 56888999999999999999998 779999999999999999999998876 555678899998
Q ss_pred CCCcHHHHHHH
Q 001031 1151 DGYSGSDLKNL 1161 (1183)
Q Consensus 1151 eGySg~DL~~L 1161 (1183)
+|--.+.|-.+
T Consensus 219 ~~nLRrAllml 229 (351)
T KOG2035|consen 219 NRNLRRALLML 229 (351)
T ss_pred cccHHHHHHHH
Confidence 87666655443
No 230
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.67 E-value=2.2e-07 Score=96.81 Aligned_cols=133 Identities=21% Similarity=0.307 Sum_probs=86.0
Q ss_pred CcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC----------------------
Q 001031 953 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---------------------- 1010 (1183)
Q Consensus 953 Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~---------------------- 1010 (1183)
|++++.+.|.+.+.. .+-++.+||+||+|+||+++|.++|+.+-+
T Consensus 1 gq~~~~~~L~~~~~~-------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~ 67 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH 67 (162)
T ss_dssp S-HHHHHHHHHHHHC-------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred CcHHHHHHHHHHHHc-------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence 677888888887753 344567999999999999999999998722
Q ss_pred -cEEEEecCccccccccchHHHHHHHHHHHhcc----CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCccc
Q 001031 1011 -NFINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1085 (1183)
Q Consensus 1011 -pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~----~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k 1085 (1183)
.++.+....... .-....++.+...+... ..-|++|||+|.|- ....+.|+..|+.
T Consensus 68 ~d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~------------~~a~NaLLK~LEe---- 128 (162)
T PF13177_consen 68 PDFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT------------EEAQNALLKTLEE---- 128 (162)
T ss_dssp TTEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHS----
T ss_pred cceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh------------HHHHHHHHHHhcC----
Confidence 122332221100 01234566665555432 35699999999882 2344555555554
Q ss_pred CCCCEEEEEecCCCCCCcHHHHhccCcEEEecC
Q 001031 1086 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 1118 (1183)
Q Consensus 1086 ~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~l 1118 (1183)
.+.++++|.+|+.++.|.+++++|+ ..+.++.
T Consensus 129 pp~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~ 160 (162)
T PF13177_consen 129 PPENTYFILITNNPSKILPTIRSRC-QVIRFRP 160 (162)
T ss_dssp TTTTEEEEEEES-GGGS-HHHHTTS-EEEEE--
T ss_pred CCCCEEEEEEECChHHChHHHHhhc-eEEecCC
Confidence 3477999999999999999999999 6666654
No 231
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=5.7e-07 Score=104.08 Aligned_cols=157 Identities=15% Similarity=0.109 Sum_probs=102.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-------E---------EEecCcccccccc-----chHHHHHHHHHHH
Q 001031 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANF-------I---------NISMSSITSKWFG-----EGEKYVKAVFSLA 1039 (1183)
Q Consensus 981 ~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pf-------i---------~I~~s~L~s~~~G-----esE~~Ir~lF~~A 1039 (1183)
.+.++.+||+||+|+||+++|.++|+.+-+.- = .-+.+++..-... -....++.+-..+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 34567899999999999999999999984310 0 0011121110000 1123455554444
Q ss_pred h----ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEE
Q 001031 1040 S----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLM 1115 (1183)
Q Consensus 1040 ~----k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~ 1115 (1183)
. ...-.|++||++|.|- ....|.|+..++. ++.++++|.+|+.++.|.+++++|+ ..+.
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrSRC-q~~~ 163 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALLT------------DAAANALLKTLEE----PPENTWFFLACREPARLLATLRSRC-RLHY 163 (334)
T ss_pred hhccccCCceEEEEcchHhhC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhChHHHHhcc-cccc
Confidence 3 3344699999999882 2344666666655 4577899999999999999999999 4789
Q ss_pred ecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHH
Q 001031 1116 VNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDL 1158 (1183)
Q Consensus 1116 I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL 1158 (1183)
++.|+.++..+.+... .++ +......++..+.|-.+..+
T Consensus 164 ~~~~~~~~~~~~L~~~---~~~-~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 164 LAPPPEQYALTWLSRE---VTM-SQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred CCCCCHHHHHHHHHHc---cCC-CHHHHHHHHHHcCCCHHHHH
Confidence 9999988777766432 122 23345566777777555444
No 232
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.63 E-value=3e-07 Score=110.30 Aligned_cols=200 Identities=21% Similarity=0.263 Sum_probs=116.2
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc
Q 001031 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW 1024 (1183)
Q Consensus 948 fdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~ 1024 (1183)
+.++.|.......+.+.+.. . ......+||.|++||||+++|++|.... +.+|+.++|+.+...+
T Consensus 137 ~~~lig~s~~~~~l~~~~~~-------~-----~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 137 TTDIIGEAPAMQDVFRIIGR-------L-----SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred cccceecCHHHHHHHHHHHH-------H-----hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 45677776666666655532 0 1223469999999999999999998876 5799999998763321
Q ss_pred -----ccchHH-------HHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEE
Q 001031 1025 -----FGEGEK-------YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1183)
Q Consensus 1025 -----~GesE~-------~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlV 1092 (1183)
+|.... .....|. ....+.|||||||.| +...+..+.+++++-.....+-......++.+
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~---~a~~Gtl~l~~i~~l-----~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~ri 276 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFE---QADGGTLFLDEIGDM-----PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRI 276 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCee---ECCCCEEEEeccccC-----CHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEE
Confidence 111100 0001111 223579999999988 22222222222221100000111111346789
Q ss_pred EEecCCC-------CCCcHHHHhccCcEEEecCCCHHHHHH----HHHHHHhhc----c--C--CChhhHHHHHHHcCCC
Q 001031 1093 LAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK----IIRVILAKE----E--L--ASDVDLEGIANMADGY 1153 (1183)
Q Consensus 1093 IaTTN~p-------~~Ld~aLlrRFd~vI~I~lPd~eeR~e----ILk~iL~k~----~--l--~~didl~~LA~~TeGy 1153 (1183)
|+||+.. ..+.+.+..|| ..+.+.+|...+|.+ ++++++.+. . . ..+..+..|..+.=-.
T Consensus 277 i~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpg 355 (469)
T PRK10923 277 IAATHQNLEQRVQEGKFREDLFHRL-NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355 (469)
T ss_pred EEeCCCCHHHHHHcCCchHHHHHHh-cceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCC
Confidence 9998753 35667888888 457788887666654 666666432 1 1 1333455555544344
Q ss_pred cHHHHHHHHHHHHHH
Q 001031 1154 SGSDLKNLCVTAAHC 1168 (1183)
Q Consensus 1154 Sg~DL~~L~~~Aa~~ 1168 (1183)
..++|+++++.|+..
T Consensus 356 Nv~eL~~~i~~~~~~ 370 (469)
T PRK10923 356 NVRQLENTCRWLTVM 370 (469)
T ss_pred hHHHHHHHHHHHHHh
Confidence 568999999888764
No 233
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.63 E-value=7.1e-07 Score=100.92 Aligned_cols=181 Identities=17% Similarity=0.220 Sum_probs=111.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCcccc--------------cc--ccchHHHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITS--------------KW--FGEGEKYVKAVFSLA 1039 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---------g~pfi~I~~s~L~s--------------~~--~GesE~~Ir~lF~~A 1039 (1183)
.++||+|++|+|||++++.+.... .+|++.+.++.--+ .+ -....+.-.++....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998654 35788877644110 00 011223344455666
Q ss_pred hccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCC--CCCCcHHHHhccCcEEEec
Q 001031 1040 SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR--PFDLDEAVVRRLPRRLMVN 1117 (1183)
Q Consensus 1040 ~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~--p~~Ld~aLlrRFd~vI~I~ 1117 (1183)
+...+-+|+||||+.++.... ...+.+++.+... ...-.-.++.+||-.- .-.-|+-+.+|| ..+.++
T Consensus 142 r~~~vrmLIIDE~H~lLaGs~-----~~qr~~Ln~LK~L----~NeL~ipiV~vGt~~A~~al~~D~QLa~RF-~~~~Lp 211 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGSY-----RKQREFLNALKFL----GNELQIPIVGVGTREAYRALRTDPQLASRF-EPFELP 211 (302)
T ss_pred HHcCCcEEEeechHHHhcccH-----HHHHHHHHHHHHH----hhccCCCeEEeccHHHHHHhccCHHHHhcc-CCccCC
Confidence 778889999999999863221 1223333333322 2222244566665432 234567888999 445554
Q ss_pred CCC-HHHHHHHHHHHHhhccC------CChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHhh
Q 001031 1118 LPD-APNREKIIRVILAKEEL------ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEK 1176 (1183)
Q Consensus 1118 lPd-~eeR~eILk~iL~k~~l------~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~le~ 1176 (1183)
.-. .++-..++..+-...++ ....-...|-.+++|..| +|..|++.||..|++..-|.
T Consensus 212 ~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG~E~ 276 (302)
T PF05621_consen 212 RWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSGEER 276 (302)
T ss_pred CCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcCCce
Confidence 422 34455666666554333 233334667778888665 89999999999999876444
No 234
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.63 E-value=3.2e-07 Score=106.89 Aligned_cols=169 Identities=24% Similarity=0.334 Sum_probs=105.8
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEec-
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISM- 1017 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-------g~pfi~I~~- 1017 (1183)
..|.-+.|++..+..|.-... .....|+||.|+.|||||+++++||.-| |++|-. +.
T Consensus 14 ~pf~aivGqd~lk~aL~l~av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~c-dP~ 78 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNC-DPD 78 (423)
T ss_pred cchhhhcCchHHHHHHhhhhc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCC-CCC
Confidence 456678999999888754321 2223579999999999999999999987 332210 00
Q ss_pred -C------------------------ccccccccchHH----------HHHH---HHH--HHhccCCeEEEEeCCccccc
Q 001031 1018 -S------------------------SITSKWFGEGEK----------YVKA---VFS--LASKIAPSVVFVDEVDSMLG 1057 (1183)
Q Consensus 1018 -s------------------------~L~s~~~GesE~----------~Ir~---lF~--~A~k~~PsILfIDEID~Ll~ 1057 (1183)
+ .+...-.+.++. .++. .|+ ...+...+||||||+..|
T Consensus 79 ~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL-- 156 (423)
T COG1239 79 DPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL-- 156 (423)
T ss_pred ChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc--
Confidence 0 011111122222 2211 111 111223479999999877
Q ss_pred CCCCcchHHHHHHHHHHH--HHhhcCCcccCCCCEEEEEecCCC-CCCcHHHHhccCcEEEecCC-CHHHHHHHHHHHHh
Q 001031 1058 RRENPGEHEAMRKMKNEF--MVNWDGLRTKDKERVLVLAATNRP-FDLDEAVVRRLPRRLMVNLP-DAPNREKIIRVILA 1133 (1183)
Q Consensus 1058 ~r~~~~~~e~l~~il~~L--L~~Ldgl~~k~~~~VlVIaTTN~p-~~Ld~aLlrRFd~vI~I~lP-d~eeR~eILk~iL~ 1133 (1183)
...-+..+-.++.+- ..+.+|+...-+.++++|+|+|+- ..|-+-|+.||+..+.+..| +.++|.+|++.-+.
T Consensus 157 ---~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 157 ---DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred ---cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence 222222222232221 234566666667899999999986 57899999999999988766 57889999888765
Q ss_pred h
Q 001031 1134 K 1134 (1183)
Q Consensus 1134 k 1134 (1183)
-
T Consensus 234 f 234 (423)
T COG1239 234 F 234 (423)
T ss_pred h
Confidence 4
No 235
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.63 E-value=6.9e-07 Score=110.58 Aligned_cols=194 Identities=14% Similarity=0.187 Sum_probs=112.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE-ecC---cc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI-SMS---SI 1020 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I-~~s---~L 1020 (1183)
..+++++.++++..+.++.++..... . ..+..-++|+||||+|||++++.+|+.++..+++. +.. ..
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~--------~-~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVL--------E-NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhccc--------c-cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 46789999999999998887753111 0 22334599999999999999999999998765441 110 00
Q ss_pred c----------cc--cccchHHHHHHHHHHHhc----------cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHh
Q 001031 1021 T----------SK--WFGEGEKYVKAVFSLASK----------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1078 (1183)
Q Consensus 1021 ~----------s~--~~GesE~~Ir~lF~~A~k----------~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~ 1078 (1183)
. .. .+......++.++..+.. ....|||||||+.++. + .......++... .
T Consensus 151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~-r----~~~~lq~lLr~~--~ 223 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFY-R----DTRALHEILRWK--Y 223 (637)
T ss_pred ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhch-h----hHHHHHHHHHHH--h
Confidence 0 00 011122334444444431 2457999999998752 1 112222222200 1
Q ss_pred hcCCcccCCCCEEEEE-ecCCCC----------C----CcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccC----
Q 001031 1079 WDGLRTKDKERVLVLA-ATNRPF----------D----LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEEL---- 1137 (1183)
Q Consensus 1079 Ldgl~~k~~~~VlVIa-TTN~p~----------~----Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l---- 1137 (1183)
.+ . ..+.+|+ +|..+. . |.+++++ |+ .+|.|++.+.....+.|+.++..+..
T Consensus 224 ~e-----~-~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~ 296 (637)
T TIGR00602 224 VS-----I-GRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGE 296 (637)
T ss_pred hc-----C-CCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence 11 1 2233333 331111 1 3467876 45 57899999999988989888876421
Q ss_pred ----CChhhHHHHHHHcCCCcHHHHHHH
Q 001031 1138 ----ASDVDLEGIANMADGYSGSDLKNL 1161 (1183)
Q Consensus 1138 ----~~didl~~LA~~TeGySg~DL~~L 1161 (1183)
.....+..|+....|--...|..|
T Consensus 297 ~~~~p~~~~l~~I~~~s~GDiRsAIn~L 324 (637)
T TIGR00602 297 KIKVPKKTSVELLCQGCSGDIRSAINSL 324 (637)
T ss_pred ccccCCHHHHHHHHHhCCChHHHHHHHH
Confidence 123457777776665444444333
No 236
>PRK08116 hypothetical protein; Validated
Probab=98.62 E-value=3.3e-07 Score=102.99 Aligned_cols=161 Identities=17% Similarity=0.230 Sum_probs=87.1
Q ss_pred cCCCCCCCCCCCcccccCcHHH---HHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---C
Q 001031 936 ADVIPPSDIGVTFDDIGALENV---KDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---G 1009 (1183)
Q Consensus 936 ~~iIp~~e~~~tfdDI~Gle~v---k~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g 1009 (1183)
...+++.-...+|+++...... ....++++.. |... .....+++|+|++|||||+||.+||+++ +
T Consensus 72 ~s~i~~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~-------~~~~--~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~ 142 (268)
T PRK08116 72 NSLLDEKFRNSTFENFLFDKGSEKAYKIARKYVKK-------FEEM--KKENVGLLLWGSVGTGKTYLAACIANELIEKG 142 (268)
T ss_pred hcCCCHHHHhcchhcccCChHHHHHHHHHHHHHHH-------HHhh--ccCCceEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3445544445678876533332 2333333321 1111 1223579999999999999999999986 7
Q ss_pred CcEEEEecCcccccccc----chHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCccc
Q 001031 1010 ANFINISMSSITSKWFG----EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1085 (1183)
Q Consensus 1010 ~pfi~I~~s~L~s~~~G----esE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k 1085 (1183)
.+++.++..+++..... ........++.... ...+|+|||+... ..+....+.+..+++....
T Consensus 143 ~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e---~~t~~~~~~l~~iin~r~~-------- 209 (268)
T PRK08116 143 VPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE---RDTEWAREKVYNIIDSRYR-------- 209 (268)
T ss_pred CeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC---CCCHHHHHHHHHHHHHHHH--------
Confidence 88888887776543211 11111112222222 3469999999532 1122222333333333321
Q ss_pred CCCCEEEEEecCCC-CC----CcHHHHhcc---CcEEEecCCC
Q 001031 1086 DKERVLVLAATNRP-FD----LDEAVVRRL---PRRLMVNLPD 1120 (1183)
Q Consensus 1086 ~~~~VlVIaTTN~p-~~----Ld~aLlrRF---d~vI~I~lPd 1120 (1183)
....+|.|||.+ .. ++..+.+|+ ...+.+.-++
T Consensus 210 --~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d 250 (268)
T PRK08116 210 --KGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKS 250 (268)
T ss_pred --CCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcC
Confidence 223467777754 33 456777774 3345666565
No 237
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=8.4e-07 Score=101.97 Aligned_cols=173 Identities=20% Similarity=0.194 Sum_probs=109.9
Q ss_pred cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-E---EEe---------cCcc
Q 001031 954 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF-I---NIS---------MSSI 1020 (1183)
Q Consensus 954 le~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pf-i---~I~---------~s~L 1020 (1183)
+..+.+.|...+.. .+-++.+||+||+|+||+++|.++|+.+-+.- . .+. .+++
T Consensus 9 ~~~~~~~l~~~~~~-------------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~ 75 (319)
T PRK08769 9 QQRAYDQTVAALDA-------------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDL 75 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCE
Confidence 34566666665542 33457899999999999999999999874321 0 000 1111
Q ss_pred ccc-----ccc------chHHHHHHHHHHHhccC----CeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCccc
Q 001031 1021 TSK-----WFG------EGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1085 (1183)
Q Consensus 1021 ~s~-----~~G------esE~~Ir~lF~~A~k~~----PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k 1085 (1183)
.-- ..| -....|+.+...+...+ -.|++||++|.|- ....|.|+..++.
T Consensus 76 ~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLEE---- 139 (319)
T PRK08769 76 QLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN------------RAACNALLKTLEE---- 139 (319)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC------------HHHHHHHHHHhhC----
Confidence 100 001 11335666655554332 3699999999882 2334556655554
Q ss_pred CCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHH
Q 001031 1086 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNL 1161 (1183)
Q Consensus 1086 ~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L 1161 (1183)
++.++++|.+|+.++.|.+++++|+ ..+.|..|+.++-.+.+... .. +..+...++.++.|-.+..+..+
T Consensus 140 Pp~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~~----~~-~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 140 PSPGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLAQ----GV-SERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CCCCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHHc----CC-ChHHHHHHHHHcCCCHHHHHHHh
Confidence 3467888888999999999999999 78899999988777666532 22 33345566777777666555433
No 238
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.7e-07 Score=104.14 Aligned_cols=85 Identities=22% Similarity=0.440 Sum_probs=57.9
Q ss_pred CeEEEEeCCcccccCCCCcchHHHHHH-HHHHHHHhhcCCcc------cCCCCEEEEEec----CCCCCCcHHHHhccCc
Q 001031 1044 PSVVFVDEVDSMLGRRENPGEHEAMRK-MKNEFMVNWDGLRT------KDKERVLVLAAT----NRPFDLDEAVVRRLPR 1112 (1183)
Q Consensus 1044 PsILfIDEID~Ll~~r~~~~~~e~l~~-il~~LL~~Ldgl~~------k~~~~VlVIaTT----N~p~~Ld~aLlrRFd~ 1112 (1183)
-+||||||||.++.+....+. ...+. +...++-.+.|-.- -....+++||+. ..|.+|-|.+.-||+-
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~-dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGP-DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCC-CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 469999999999865532221 22222 22334434443221 124779999987 5689999999999999
Q ss_pred EEEecCCCHHHHHHHHH
Q 001031 1113 RLMVNLPDAPNREKIIR 1129 (1183)
Q Consensus 1113 vI~I~lPd~eeR~eILk 1129 (1183)
++++...+.++-.+||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999888777653
No 239
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.56 E-value=1.9e-07 Score=117.76 Aligned_cols=188 Identities=18% Similarity=0.190 Sum_probs=104.7
Q ss_pred hHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhh---cC----CCCCCCceEEEEcCCCChHHHH
Q 001031 928 NEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFC---KG----QLTKPCKGILLFGPPGTGKTML 1000 (1183)
Q Consensus 928 ~E~ek~ll~~iIp~~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~---k~----~l~kP~~gVLL~GPPGTGKT~L 1000 (1183)
.+..+.+...+.| .|.|++.+|..|.-.+.--......+. .+ .-.+...+|||.|+||||||.+
T Consensus 438 p~i~~~L~~SiaP---------~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqL 508 (915)
T PTZ00111 438 PMIYRILLDSFAP---------SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQL 508 (915)
T ss_pred HHHHHHHHHHhCC---------eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHH
Confidence 3444555555655 689999999887443322111000000 00 1123345799999999999999
Q ss_pred HHHHHHHhC-------CcEEEEecCccccccccc--hHHH-HHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHH
Q 001031 1001 AKAVATEAG-------ANFINISMSSITSKWFGE--GEKY-VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRK 1070 (1183)
Q Consensus 1001 AkAIA~eLg-------~pfi~I~~s~L~s~~~Ge--sE~~-Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~ 1070 (1183)
|+++++... .++..+.+..... ..+. .+.. -.+.+. ....++++|||+|.| +...+..+..
T Consensus 509 Ar~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~~le~GaLv---lAdgGtL~IDEidkm-----s~~~Q~aLlE 579 (915)
T PTZ00111 509 LHYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRAMIQPGAVV---LANGGVCCIDELDKC-----HNESRLSLYE 579 (915)
T ss_pred HHHHHHhCCccccCCCCCCccccccchhh-hcccccCcccccCCcEE---EcCCCeEEecchhhC-----CHHHHHHHHH
Confidence 999998652 3444444332211 0000 0000 001111 223479999999988 2222222222
Q ss_pred HHHHHHHhh--cCCcccCCCCEEEEEecCCC-------------CCCcHHHHhccCcEEE-ecCCCHHHHHHHHHHHHh
Q 001031 1071 MKNEFMVNW--DGLRTKDKERVLVLAATNRP-------------FDLDEAVVRRLPRRLM-VNLPDAPNREKIIRVILA 1133 (1183)
Q Consensus 1071 il~~LL~~L--dgl~~k~~~~VlVIaTTN~p-------------~~Ld~aLlrRFd~vI~-I~lPd~eeR~eILk~iL~ 1133 (1183)
++.+-...+ .|+...-+.++.||||+|+. -.|++.+++||+.++. ++.|+.+.-..|.++++.
T Consensus 580 aMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 580 VMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred HHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHH
Confidence 222111111 13333345789999999984 2577999999987654 477887776777666653
No 240
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=1e-06 Score=102.22 Aligned_cols=133 Identities=15% Similarity=0.156 Sum_probs=91.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEE---EEec--------------Cccccccc-------------------
Q 001031 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI---NISM--------------SSITSKWF------------------- 1025 (1183)
Q Consensus 982 kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi---~I~~--------------s~L~s~~~------------------- 1025 (1183)
+.++.+||+||+|+||+++|+++|+.+.+..- .-.| +++.--..
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 45578999999999999999999999854220 0000 11100000
Q ss_pred ---c---------chHHHHHHHHHHHhc----cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCC
Q 001031 1026 ---G---------EGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1089 (1183)
Q Consensus 1026 ---G---------esE~~Ir~lF~~A~k----~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~ 1089 (1183)
| -.-..++.+...+.. ..-.|++||++|.|- ....|.|+..++. ++.+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLEE----PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhcC----CCcC
Confidence 0 112345555544432 234599999999882 2344666666664 4477
Q ss_pred EEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHH
Q 001031 1090 VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVI 1131 (1183)
Q Consensus 1090 VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~i 1131 (1183)
+++|.+|+.++.|.+++++|+ ..+.|+.|+.++..+.+...
T Consensus 163 t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 899999999999999999999 78999999998888877653
No 241
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.54 E-value=9.5e-07 Score=102.39 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=48.0
Q ss_pred Ccc-cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------cEEEEec
Q 001031 947 TFD-DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------NFINISM 1017 (1183)
Q Consensus 947 tfd-DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-------pfi~I~~ 1017 (1183)
-|+ ++.|+++.+.++.+++..... +.....+-++|+||||+|||+||++|++.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~--------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQ--------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 355 799999999999887754221 11223356899999999999999999999965 7777765
No 242
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.54 E-value=7.9e-07 Score=106.09 Aligned_cols=175 Identities=20% Similarity=0.277 Sum_probs=100.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc-----ccchHHH-------HHHHHHHHhccCCeEEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-----FGEGEKY-------VKAVFSLASKIAPSVVFV 1049 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~-----~GesE~~-------Ir~lF~~A~k~~PsILfI 1049 (1183)
..+||+|++||||+++|+++.... +.+|+.++|..+...+ +|..... ....|. ....++|||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l 243 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFE---RANEGTLLL 243 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceE---ECCCCEEEE
Confidence 479999999999999999998765 5799999998764321 1210000 001121 223579999
Q ss_pred eCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCC-------CCCcHHHHhccCcEEEecCCCHH
Q 001031 1050 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAP 1122 (1183)
Q Consensus 1050 DEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~I~lPd~e 1122 (1183)
||||.| +...+..+..++..-.....+.....+.++.+|+||+.. ..+.+.+..|+ ..+.+.+|...
T Consensus 244 d~i~~l-----~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l-~~~~i~~ppLr 317 (457)
T PRK11361 244 DEIGEM-----PLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRL-NVIHLILPPLR 317 (457)
T ss_pred echhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChh
Confidence 999988 222222222222111000001111123468999999753 34566677777 45788888887
Q ss_pred HHHH----HHHHHHhhcc----C----CChhhHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001031 1123 NREK----IIRVILAKEE----L----ASDVDLEGIANMADGYSGSDLKNLCVTAAHC 1168 (1183)
Q Consensus 1123 eR~e----ILk~iL~k~~----l----~~didl~~LA~~TeGySg~DL~~L~~~Aa~~ 1168 (1183)
+|.+ ++.+++.+.. . ..+..+..|..+.=-...++|++++..|+..
T Consensus 318 eR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 318 DRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred hchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 7754 4444544321 1 1233344444443234568888888888764
No 243
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=2.6e-06 Score=97.91 Aligned_cols=147 Identities=15% Similarity=0.123 Sum_probs=97.2
Q ss_pred cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE---------------EEecC
Q 001031 954 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI---------------NISMS 1018 (1183)
Q Consensus 954 le~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi---------------~I~~s 1018 (1183)
+....+.+...+.. .+.++.+||+||.|+||+.+|+++|+.+-+.-. .-+.+
T Consensus 8 l~~~~~~l~~~~~~-------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 8 LVPVWQNWKAGLDA-------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHP 74 (319)
T ss_pred HHHHHHHHHHHHHc-------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 34566666665542 345578999999999999999999998733110 00011
Q ss_pred ccccccc---c--chHHHHHHHHHHHhc----cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCC
Q 001031 1019 SITSKWF---G--EGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKER 1089 (1183)
Q Consensus 1019 ~L~s~~~---G--esE~~Ir~lF~~A~k----~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~ 1089 (1183)
++..-.. | -....++.+-..+.. ..-.|++||++|.|- ....|.|+..++. ++.+
T Consensus 75 D~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLEE----Pp~~ 138 (319)
T PRK06090 75 DLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN------------ESASNALLKTLEE----PAPN 138 (319)
T ss_pred CEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhC------------HHHHHHHHHHhcC----CCCC
Confidence 2210000 1 112345555444432 234699999999882 2344566666655 3467
Q ss_pred EEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHH
Q 001031 1090 VLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV 1130 (1183)
Q Consensus 1090 VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~ 1130 (1183)
+++|.+|+.++.|.+++++|+ ..+.|+.|+.++..+.+..
T Consensus 139 t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 139 CLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred eEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 899999999999999999999 6899999998887776653
No 244
>PRK12377 putative replication protein; Provisional
Probab=98.51 E-value=7.2e-07 Score=99.21 Aligned_cols=151 Identities=19% Similarity=0.229 Sum_probs=84.6
Q ss_pred HHhcCCCCCCCCCCCcccccCc----HHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001031 933 KLLADVIPPSDIGVTFDDIGAL----ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 933 ~ll~~iIp~~e~~~tfdDI~Gl----e~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
.+....|++.....+|+++... ..+...+..++.. |.. ...+++|+||||||||+||.+|++.+
T Consensus 58 ~~~~s~i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~-------~~~-----~~~~l~l~G~~GtGKThLa~AIa~~l 125 (248)
T PRK12377 58 ILNRSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIADE-------LMT-----GCTNFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred HHHHcCCCcccccCCcCCcccCChhHHHHHHHHHHHHHH-------HHh-----cCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3344556766667789887532 2233344443321 111 12589999999999999999999988
Q ss_pred ---CCcEEEEecCccccccccch--HHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCc
Q 001031 1009 ---GANFINISMSSITSKWFGEG--EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1083 (1183)
Q Consensus 1009 ---g~pfi~I~~s~L~s~~~Ges--E~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~ 1083 (1183)
+..++.++.+++....-... ......++... ....+|+|||+...- .+....+.+..+++..+.
T Consensus 126 ~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~---~s~~~~~~l~~ii~~R~~------ 194 (248)
T PRK12377 126 LAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR---ETKNEQVVLNQIIDRRTA------ 194 (248)
T ss_pred HHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC---CCHHHHHHHHHHHHHHHh------
Confidence 67788887777654321100 00111222222 356799999996541 222233333333333221
Q ss_pred ccCCCCEEEEEecCCC-----CCCcHHHHhcc
Q 001031 1084 TKDKERVLVLAATNRP-----FDLDEAVVRRL 1110 (1183)
Q Consensus 1084 ~k~~~~VlVIaTTN~p-----~~Ld~aLlrRF 1110 (1183)
...-+|.|||.. ..+...+++|+
T Consensus 195 ----~~~ptiitSNl~~~~l~~~~~~ri~dRl 222 (248)
T PRK12377 195 ----SMRSVGMLTNLNHEAMSTLLGERVMDRM 222 (248)
T ss_pred ----cCCCEEEEcCCCHHHHHHHhhHHHHHHH
Confidence 223456778864 23455666665
No 245
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.45 E-value=4e-06 Score=93.19 Aligned_cols=91 Identities=23% Similarity=0.328 Sum_probs=57.9
Q ss_pred CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCC-------------CCCCcHHHHhc
Q 001031 1043 APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-------------PFDLDEAVVRR 1109 (1183)
Q Consensus 1043 ~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~-------------p~~Ld~aLlrR 1109 (1183)
-|+||||||++.| + -+ .+..|-..+.. +-.-+||+++|+ |+-+++.+++|
T Consensus 296 vPGVLFIDEVhML-----D---iE----cFTyL~kalES-----~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDR 358 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----D---IE----CFTYLHKALES-----PIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDR 358 (456)
T ss_pred cCcceEeeehhhh-----h---hH----HHHHHHHHhcC-----CCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhh
Confidence 4889999999876 1 11 11111112221 122356666664 67788999999
Q ss_pred cCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcC
Q 001031 1110 LPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMAD 1151 (1183)
Q Consensus 1110 Fd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~Te 1151 (1183)
+ .+|..-+.+.++.++|++...+.+++. .+..+..|+....
T Consensus 359 l-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt 400 (456)
T KOG1942|consen 359 L-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGT 400 (456)
T ss_pred e-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhcc
Confidence 8 677777778888889999888776665 4445666665443
No 246
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.44 E-value=1.8e-06 Score=95.82 Aligned_cols=109 Identities=22% Similarity=0.312 Sum_probs=67.2
Q ss_pred HHhcCCCCCCCCCCCcccccCc-HH---HHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001031 933 KLLADVIPPSDIGVTFDDIGAL-EN---VKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 933 ~ll~~iIp~~e~~~tfdDI~Gl-e~---vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
.+....|++.....+|+++... +. +...+.+++.. |. ....+++|+|+||||||+|+.+||+++
T Consensus 56 ~~~~s~i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~-------~~-----~~~~~~~l~G~~GtGKThLa~aia~~l 123 (244)
T PRK07952 56 TFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEE-------FD-----GNIASFIFSGKPGTGKNHLAAAICNEL 123 (244)
T ss_pred HHHHcCCCccccCCccccccCCCchHHHHHHHHHHHHHh-------hc-----cCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3344556666667789886533 22 23333333321 11 112489999999999999999999998
Q ss_pred ---CCcEEEEecCccccccccc---hHHHHHHHHHHHhccCCeEEEEeCCccc
Q 001031 1009 ---GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1183)
Q Consensus 1009 ---g~pfi~I~~s~L~s~~~Ge---sE~~Ir~lF~~A~k~~PsILfIDEID~L 1055 (1183)
+..++.++..++....... .......++.... ...+|+|||++..
T Consensus 124 ~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 124 LLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred HhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 7788888877766432211 1111223333322 4679999999865
No 247
>PRK15115 response regulator GlrR; Provisional
Probab=98.42 E-value=2.5e-06 Score=101.59 Aligned_cols=172 Identities=19% Similarity=0.269 Sum_probs=102.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHH---------------HhccCCeE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSL---------------ASKIAPSV 1046 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~~GesE~~Ir~lF~~---------------A~k~~PsI 1046 (1183)
..++|+|++||||+++|+++.+.. +.+|+.++|..+...+.. ..+|.. ......++
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~------~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLE------SELFGHARGAFTGAVSNREGLFQAAEGGT 231 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHH------HHhcCCCcCCCCCCccCCCCcEEECCCCE
Confidence 469999999999999999998875 579999999876332211 112211 11224579
Q ss_pred EEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCC-------CCCcHHHHhccCcEEEecCC
Q 001031 1047 VFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLP 1119 (1183)
Q Consensus 1047 LfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~I~lP 1119 (1183)
|||||||.| +...+..+.+++.+-....-+.......++.+|+||+.. ..+.+.+..|+ ..+.+.+|
T Consensus 232 l~l~~i~~l-----~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l-~~~~i~lP 305 (444)
T PRK15115 232 LFLDEIGDM-----PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRL-NVVSLKIP 305 (444)
T ss_pred EEEEccccC-----CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhh-ceeeecCC
Confidence 999999988 222233322222211100011111122468999998753 23445555566 46788899
Q ss_pred CHHHHHH----HHHHHHhhc----c--C--CChhhHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001031 1120 DAPNREK----IIRVILAKE----E--L--ASDVDLEGIANMADGYSGSDLKNLCVTAAHC 1168 (1183)
Q Consensus 1120 d~eeR~e----ILk~iL~k~----~--l--~~didl~~LA~~TeGySg~DL~~L~~~Aa~~ 1168 (1183)
...+|.+ ++++++.+. . . .++..+..|..+.=.-..++|+++++.|+..
T Consensus 306 pLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 306 ALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred ChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 9888854 445555432 1 1 2344455555555334568888888887764
No 248
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=98.41 E-value=4.1e-07 Score=107.31 Aligned_cols=82 Identities=26% Similarity=0.340 Sum_probs=70.8
Q ss_pred ceeeecceeEEccCCccceeecCCC--CCccceEEEEeecCCcceEEEEEecCCceEEEc--CeecCCCceEEeeCCCEE
Q 001031 146 HLSMTGAVFTVGHNRQCDLYLKDPS--ISKNLCRLRRIENGGPSGALLEITGGKGEVEVN--GNVHPKDSQVVLRGGDEL 221 (1183)
Q Consensus 146 ~~~i~~~~~t~G~~~~cd~~l~d~~--~s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vN--g~~~~k~~~~~L~~gDev 221 (1183)
.+.+....++|||+..||+.+.|+. +|..||+|... +|. .+|+|.|+||| +|| |..+.++..+.|+.||+|
T Consensus 18 ~~~f~~~~~~IGR~~~~d~~l~d~~~~VS~~Ha~I~~~--~g~--~~l~DlStNGT-~VN~sg~~l~~~~~~~L~~GD~I 92 (396)
T TIGR03354 18 QKTFGTNGGTIGRSEDCDWVLPDPERHVSGRHARIRYR--DGA--YLLTDLSTNGV-FLNGSGSPLGRGNPVRLEQGDRL 92 (396)
T ss_pred EEEECCCCEEEecCCCCCEEeCCCCCCcchhhcEEEEE--CCE--EEEEECCCCCe-EECCCCCCCCCCCceEcCCCCEE
Confidence 5667778899999999999999999 99999999965 343 78999988999 799 999999999999999999
Q ss_pred EEccCCCeeEE
Q 001031 222 VFSPSGKHSYI 232 (1183)
Q Consensus 222 ~f~~~~~~ayi 232 (1183)
.|+...-..++
T Consensus 93 ~iG~~~lrv~~ 103 (396)
T TIGR03354 93 RLGDYEIRVSL 103 (396)
T ss_pred EECCEEEEEEe
Confidence 99876444443
No 249
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.38 E-value=1.2e-06 Score=98.71 Aligned_cols=158 Identities=19% Similarity=0.229 Sum_probs=103.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc------EEEEecC
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN------FINISMS 1018 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p------fi~I~~s 1018 (1183)
...++++++++++...+.++... .+- .++|+|||||||||....+.|+.+-.+ +..++.+
T Consensus 37 P~~l~dv~~~~ei~st~~~~~~~-------------~~l-Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS 102 (360)
T KOG0990|consen 37 PPFLGIVIKQEPIWSTENRYSGM-------------PGL-PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS 102 (360)
T ss_pred CchhhhHhcCCchhhHHHHhccC-------------CCC-CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc
Confidence 44677899999998888886432 111 389999999999999999999988443 1223333
Q ss_pred ccccccccchHHHHHHHHHHHhc-------cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEE
Q 001031 1019 SITSKWFGEGEKYVKAVFSLASK-------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 1091 (1183)
Q Consensus 1019 ~L~s~~~GesE~~Ir~lF~~A~k-------~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~Vl 1091 (1183)
+-.+ .+ ..+.--..|..++. ..+..+++||.|.+. ...+.++++++..+ ..++.
T Consensus 103 d~rg--id-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT-----~~AQnALRRviek~-----------t~n~r 163 (360)
T KOG0990|consen 103 DDRG--ID-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT-----RDAQNALRRVIEKY-----------TANTR 163 (360)
T ss_pred CccC--Cc-chHHHHHHHHhhccceeccccCceeEEEecchhHhh-----HHHHHHHHHHHHHh-----------ccceE
Confidence 3111 11 11222334555442 256799999999882 33455566544433 25577
Q ss_pred EEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhcc
Q 001031 1092 VLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE 1136 (1183)
Q Consensus 1092 VIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~ 1136 (1183)
++..+|.+..+.+++++|| -.+.+...+..+-...+.+++..+.
T Consensus 164 F~ii~n~~~ki~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e~ 207 (360)
T KOG0990|consen 164 FATISNPPQKIHPAQQSRC-TRFRFAPLTMAQQTERQSHIRESEQ 207 (360)
T ss_pred EEEeccChhhcCchhhccc-ccCCCCCCChhhhhhHHHHHHhcch
Confidence 7777899999999999998 4566666666666666666665543
No 250
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.6e-07 Score=110.63 Aligned_cols=48 Identities=38% Similarity=0.550 Sum_probs=39.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
..+|.||.|++..|..+.-... ..+++|++|||||||||||+.+..-+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA----------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA----------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh----------------cCCcEEEecCCCCchHHhhhhhcccC
Confidence 3479999999999999976543 23689999999999999999875433
No 251
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.36 E-value=1.6e-06 Score=103.70 Aligned_cols=202 Identities=21% Similarity=0.270 Sum_probs=110.5
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc--
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW-- 1024 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~-- 1024 (1183)
.+.|.......+.+.+.. + ......++|.|.+||||+++|+++.... +.+|+.++|..+...+
T Consensus 135 ~lig~s~~~~~v~~~i~~-~-----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGR-L-----------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ceeecCHHHHHHHHHHHH-H-----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 466666666666555432 0 1122469999999999999999998775 5799999998763322
Q ss_pred ---ccchHH----HHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecC
Q 001031 1025 ---FGEGEK----YVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1097 (1183)
Q Consensus 1025 ---~GesE~----~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN 1097 (1183)
+|.... ..............+.||||||+.| +...+..+.+++.+-....-+-......++.+|++|+
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l-----~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~ 277 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDM-----PLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATH 277 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhC-----CHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCC
Confidence 121000 0000000011234689999999988 2222222222211100000010011124678899887
Q ss_pred CC-------CCCcHHHHhccCcEEEecCCCHHHH----HHHHHHHHhhc----c----CCChhhHHHHHHHcCCCcHHHH
Q 001031 1098 RP-------FDLDEAVVRRLPRRLMVNLPDAPNR----EKIIRVILAKE----E----LASDVDLEGIANMADGYSGSDL 1158 (1183)
Q Consensus 1098 ~p-------~~Ld~aLlrRFd~vI~I~lPd~eeR----~eILk~iL~k~----~----l~~didl~~LA~~TeGySg~DL 1158 (1183)
.. ..+.+.+..|+ ..+.+.+|...+| ..++++++... + ..++..+..|..+.=--..++|
T Consensus 278 ~~l~~~~~~~~f~~~L~~rl-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL 356 (463)
T TIGR01818 278 QNLEALVRQGKFREDLFHRL-NVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQL 356 (463)
T ss_pred CCHHHHHHcCCcHHHHHHHh-CcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHH
Confidence 53 35666777777 3466777765544 44555555432 1 1133334445444322344899
Q ss_pred HHHHHHHHHHh
Q 001031 1159 KNLCVTAAHCP 1169 (1183)
Q Consensus 1159 ~~L~~~Aa~~A 1169 (1183)
++++..|+..+
T Consensus 357 ~~~~~~~~~~~ 367 (463)
T TIGR01818 357 ENLCRWLTVMA 367 (463)
T ss_pred HHHHHHHHHhC
Confidence 99999888743
No 252
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.34 E-value=8.4e-07 Score=107.36 Aligned_cols=152 Identities=24% Similarity=0.309 Sum_probs=86.4
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC----cEEEEec----
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA----NFINISM---- 1017 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~----pfi~I~~---- 1017 (1183)
..|.++.|...+++.+.-. ......++|+||||+|||+|++.++..+.. ..+.+..
T Consensus 188 ~d~~~v~Gq~~~~~al~la----------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~ 251 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT----------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSL 251 (506)
T ss_pred cCeEEEECcHHHHhhhhee----------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhh
Confidence 3677888887766665321 113367999999999999999999876521 1111100
Q ss_pred --C-----ccc-------------cccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHH
Q 001031 1018 --S-----SIT-------------SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1183)
Q Consensus 1018 --s-----~L~-------------s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~ 1077 (1183)
. .+. ...+|.....-...+..|.. ++||||||+.+ +...++.+.+.+++-..
T Consensus 252 ~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----~~~~~~~L~~~LE~g~v 323 (506)
T PRK09862 252 VNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----ERRTLDALREPIESGQI 323 (506)
T ss_pred hccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----CHHHHHHHHHHHHcCcE
Confidence 0 000 00111111111223444433 89999999876 22222333322222111
Q ss_pred hhc--CCcccCCCCEEEEEecCCCC---------------------CCcHHHHhccCcEEEecCCCH
Q 001031 1078 NWD--GLRTKDKERVLVLAATNRPF---------------------DLDEAVVRRLPRRLMVNLPDA 1121 (1183)
Q Consensus 1078 ~Ld--gl~~k~~~~VlVIaTTN~p~---------------------~Ld~aLlrRFd~vI~I~lPd~ 1121 (1183)
.+. +.....+.++.+|+|+|+.. .|...+++||+..+.++.|+.
T Consensus 324 ~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~ 390 (506)
T PRK09862 324 HLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPP 390 (506)
T ss_pred EEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCH
Confidence 111 11112357899999999752 477899999999999988753
No 253
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.31 E-value=3.3e-06 Score=90.12 Aligned_cols=180 Identities=19% Similarity=0.281 Sum_probs=92.6
Q ss_pred cCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC---cEEEEec-Ccc-------
Q 001031 952 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA---NFINISM-SSI------- 1020 (1183)
Q Consensus 952 ~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~---pfi~I~~-s~L------- 1020 (1183)
.|.+...+.|.+.+.. .+...++|+||.|+|||+|++.+...+.- ..+.+.. ...
T Consensus 2 ~gR~~el~~l~~~l~~--------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 67 (234)
T PF01637_consen 2 FGREKELEKLKELLES--------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRS 67 (234)
T ss_dssp -S-HHHHHHHHHCHHH----------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHH
Confidence 4556666666665431 12357999999999999999999998832 1111111 110
Q ss_pred --------------ccc-------------cccchHHHHHHHHHHHhcc-CCeEEEEeCCcccc-cCCCCcchHHHHHHH
Q 001031 1021 --------------TSK-------------WFGEGEKYVKAVFSLASKI-APSVVFVDEVDSML-GRRENPGEHEAMRKM 1071 (1183)
Q Consensus 1021 --------------~s~-------------~~GesE~~Ir~lF~~A~k~-~PsILfIDEID~Ll-~~r~~~~~~e~l~~i 1071 (1183)
... ........+..++....+. ...||+|||++.+. ..... . .+
T Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~---~----~~ 140 (234)
T PF01637_consen 68 FIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEED---K----DF 140 (234)
T ss_dssp HHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTT---H----HH
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccch---H----HH
Confidence 000 0011234555666655543 34899999999996 22211 2 22
Q ss_pred HHHHHHhhcCCcccCCCCEEEEEecCCCC------CCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhcc-C-CChhhH
Q 001031 1072 KNEFMVNWDGLRTKDKERVLVLAATNRPF------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEE-L-ASDVDL 1143 (1183)
Q Consensus 1072 l~~LL~~Ldgl~~k~~~~VlVIaTTN~p~------~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~-l-~~didl 1143 (1183)
+..+...++..... .++.+|.++.... .-...+..|+.. +.++..+.++..++++..+.... + .++.++
T Consensus 141 ~~~l~~~~~~~~~~--~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T PF01637_consen 141 LKSLRSLLDSLLSQ--QNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDI 217 (234)
T ss_dssp HHHHHHHHHH------TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHH
T ss_pred HHHHHHHHhhcccc--CCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 33333333332222 3444444433211 111234457755 99999999999999999876651 1 267788
Q ss_pred HHHHHHcCCCcH
Q 001031 1144 EGIANMADGYSG 1155 (1183)
Q Consensus 1144 ~~LA~~TeGySg 1155 (1183)
+.+...+.|+.+
T Consensus 218 ~~i~~~~gG~P~ 229 (234)
T PF01637_consen 218 EEIYSLTGGNPR 229 (234)
T ss_dssp HHHHHHHTT-HH
T ss_pred HHHHHHhCCCHH
Confidence 999999988643
No 254
>PRK08181 transposase; Validated
Probab=98.30 E-value=6.6e-06 Score=92.67 Aligned_cols=69 Identities=23% Similarity=0.374 Sum_probs=48.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc-hHHHHHHHHHHHhccCCeEEEEeCCccc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~~Ge-sE~~Ir~lF~~A~k~~PsILfIDEID~L 1055 (1183)
.+++|+||||||||+||.+|++++ |..++.++..++....... .+......+... ..+.+|+|||++.+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~ 179 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYV 179 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccc
Confidence 579999999999999999999865 7788888877766543110 011122233322 24679999999876
No 255
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.29 E-value=2e-05 Score=92.70 Aligned_cols=196 Identities=21% Similarity=0.286 Sum_probs=125.7
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCccccc-
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITSK- 1023 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-----g~pfi~I~~s~L~s~- 1023 (1183)
.+.|.+..+..+++++...+. ...+.++.+.|-||||||.+...+...+ ....++++|..+...
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle----------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLE----------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CccchHHHHHHHHHHHHhhhh----------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 578888999999998876554 2234679999999999999998776655 234577888653211
Q ss_pred ---------c----ccc-hHHHHHHHHHHH-hcc-CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCC
Q 001031 1024 ---------W----FGE-GEKYVKAVFSLA-SKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDK 1087 (1183)
Q Consensus 1024 ---------~----~Ge-sE~~Ir~lF~~A-~k~-~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~ 1087 (1183)
+ .+. .+......|..- ... .+-||++||+|.|+.+... ++-+ +.+|..+ .+
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~---------vLy~-lFewp~l---p~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT---------VLYT-LFEWPKL---PN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc---------eeee-ehhcccC---Cc
Confidence 1 111 111222333322 222 3679999999999632211 1111 2234443 45
Q ss_pred CCEEEEEecCCCCCCcHHHHh---c---cCcEEEecCCCHHHHHHHHHHHHhhccCCC--hhhHHHHHHHcCCCcHHHHH
Q 001031 1088 ERVLVLAATNRPFDLDEAVVR---R---LPRRLMVNLPDAPNREKIIRVILAKEELAS--DVDLEGIANMADGYSGSDLK 1159 (1183)
Q Consensus 1088 ~~VlVIaTTN~p~~Ld~aLlr---R---Fd~vI~I~lPd~eeR~eILk~iL~k~~l~~--didl~~LA~~TeGySg~DL~ 1159 (1183)
.++++|+.+|..+.-|..+-+ | -+.++.|++.+.++..+|++.-+....... ...++..|+...|.|| |++
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 789999999987655443333 2 356899999999999999999888765432 3457788888888887 554
Q ss_pred H---HHHHHHHHh
Q 001031 1160 N---LCVTAAHCP 1169 (1183)
Q Consensus 1160 ~---L~~~Aa~~A 1169 (1183)
. +|+.|...+
T Consensus 367 kaLdv~R~aiEI~ 379 (529)
T KOG2227|consen 367 KALDVCRRAIEIA 379 (529)
T ss_pred HHHHHHHHHHHHH
Confidence 4 455554433
No 256
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.27 E-value=1.3e-05 Score=97.75 Aligned_cols=203 Identities=21% Similarity=0.265 Sum_probs=130.6
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCc
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSS 1019 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~pfi~I~~s~ 1019 (1183)
.+.+.+.-..+|..++...+.. +. -...+.+.|-||||||.++..+-..+ .+.|+.+++-.
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~-----~~----~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~ 467 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISD-----QG----LGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLR 467 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCC-----CC----CceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEccee
Confidence 3556677777777777654431 01 11369999999999999999987755 47888888755
Q ss_pred cccc----------cccch------HHHHHHHHHHH-hccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCC
Q 001031 1020 ITSK----------WFGEG------EKYVKAVFSLA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1082 (1183)
Q Consensus 1020 L~s~----------~~Ges------E~~Ir~lF~~A-~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl 1082 (1183)
+.+. +.|+. -..+..-|... .+..++||+|||+|.|+.+. +..++.+-.+
T Consensus 468 l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~-------------QdVlYn~fdW 534 (767)
T KOG1514|consen 468 LASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS-------------QDVLYNIFDW 534 (767)
T ss_pred ecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc-------------HHHHHHHhcC
Confidence 4332 11211 11233333311 23457899999999996432 2233333345
Q ss_pred cccCCCCEEEEEecCCCCCCcH----HHHhccC-cEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcH--
Q 001031 1083 RTKDKERVLVLAATNRPFDLDE----AVVRRLP-RRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG-- 1155 (1183)
Q Consensus 1083 ~~k~~~~VlVIaTTN~p~~Ld~----aLlrRFd-~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg-- 1155 (1183)
+...+.+++||+.+|..+.... .+-+|++ .++.|...+.++..+|+...+...........+.+|+.-...||
T Consensus 535 pt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDa 614 (767)
T KOG1514|consen 535 PTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDA 614 (767)
T ss_pred CcCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccH
Confidence 5556788999988887543222 2333654 47889999999999999998877644444455666665554454
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 001031 1156 SDLKNLCVTAAHCPIREIL 1174 (1183)
Q Consensus 1156 ~DL~~L~~~Aa~~Aire~l 1174 (1183)
+.-..+|+.|+..+-.+..
T Consensus 615 Rraldic~RA~Eia~~~~~ 633 (767)
T KOG1514|consen 615 RRALDICRRAAEIAEERNV 633 (767)
T ss_pred HHHHHHHHHHHHHhhhhcc
Confidence 4555678888888877765
No 257
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.26 E-value=6.9e-06 Score=102.11 Aligned_cols=49 Identities=31% Similarity=0.460 Sum_probs=41.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
...|+++.|+++++..|...+.. .+++||+||||||||++++++++.+.
T Consensus 27 ~~~~~~vigq~~a~~~L~~~~~~----------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 27 ERLIDQVIGQEHAVEVIKKAAKQ----------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccHHHcCChHHHHHHHHHHHHh----------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 35788999999999998876652 13799999999999999999998764
No 258
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.26 E-value=3e-05 Score=94.63 Aligned_cols=201 Identities=15% Similarity=0.235 Sum_probs=117.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc---
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT--- 1021 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~--- 1021 (1183)
..+.+|+....+..++++.++...+. . ..+.+-+||+||+|||||++++.+|+++|+.+++...+...
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~------~---~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~ 85 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFS------G---SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRES 85 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhc------c---CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcccc
Confidence 35677888888888888888763221 1 12234589999999999999999999999998886433220
Q ss_pred ----cccccc---hH---HH---HHHH-HHHHhc-----------cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHH
Q 001031 1022 ----SKWFGE---GE---KY---VKAV-FSLASK-----------IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM 1076 (1183)
Q Consensus 1022 ----s~~~Ge---sE---~~---Ir~l-F~~A~k-----------~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL 1076 (1183)
..+.+. .+ .. ...+ +..++. ..+.||+|+|+-.++ ... ....+.++.+++
T Consensus 86 ~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~----~~~-~~~f~~~L~~~l 160 (519)
T PF03215_consen 86 DNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVF----HRD-TSRFREALRQYL 160 (519)
T ss_pred ccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeecccccc----chh-HHHHHHHHHHHH
Confidence 011111 00 01 1111 111111 246799999997553 111 133334444443
Q ss_pred HhhcCCcccCCC-CEEEEEe-c------CCC--------CCCcHHHHhcc-CcEEEecCCCHHHHHHHHHHHHhhc----
Q 001031 1077 VNWDGLRTKDKE-RVLVLAA-T------NRP--------FDLDEAVVRRL-PRRLMVNLPDAPNREKIIRVILAKE---- 1135 (1183)
Q Consensus 1077 ~~Ldgl~~k~~~-~VlVIaT-T------N~p--------~~Ld~aLlrRF-d~vI~I~lPd~eeR~eILk~iL~k~---- 1135 (1183)
.. ... ++++|.| + |.. ..+.+.++... -.+|.|.+-...-..+.|+.++..+
T Consensus 161 ~~-------~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~ 233 (519)
T PF03215_consen 161 RS-------SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSS 233 (519)
T ss_pred Hc-------CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence 32 112 6777777 1 111 13556676632 2578888888877778888877765
Q ss_pred ----cCCChh-hHHHHHHHcCCCcHHHHHHHHHHHHHHhH
Q 001031 1136 ----ELASDV-DLEGIANMADGYSGSDLKNLCVTAAHCPI 1170 (1183)
Q Consensus 1136 ----~l~~di-dl~~LA~~TeGySg~DL~~L~~~Aa~~Ai 1170 (1183)
...... .++.|+..+. +||+..+..-.+.+.
T Consensus 234 ~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 234 SGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred cCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 111222 3677777654 577777666665555
No 259
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.24 E-value=1.1e-05 Score=95.89 Aligned_cols=172 Identities=17% Similarity=0.241 Sum_probs=98.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHH-------H--------HhccCCeE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFS-------L--------ASKIAPSV 1046 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~~GesE~~Ir~lF~-------~--------A~k~~PsI 1046 (1183)
..++|+|.+||||+++|+++.... +.+|+.++|..+...++. ..+|. . ......++
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~------~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 236 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLE------SELFGHEKGAFTGADKRREGRFVEADGGT 236 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHH------HHhcCCCCCCcCCCCcCCCCceeECCCCE
Confidence 579999999999999999997665 579999999875432211 11111 0 12234689
Q ss_pred EEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCC-------CCCcHHHHhccCcEEEecCC
Q 001031 1047 VFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLP 1119 (1183)
Q Consensus 1047 LfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~I~lP 1119 (1183)
|||||||.| +...+..+..++.+-.....+........+.+|++|+.. ..+...+..|+ ..+.+.+|
T Consensus 237 l~ldei~~l-----~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l-~~~~i~~p 310 (441)
T PRK10365 237 LFLDEIGDI-----SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL-NVVAIEVP 310 (441)
T ss_pred EEEeccccC-----CHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCC
Confidence 999999998 222222221111111100111111112457888888653 23555666666 45788888
Q ss_pred CHHHHHH----HHHHHHhhc----cC----CChhhHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001031 1120 DAPNREK----IIRVILAKE----EL----ASDVDLEGIANMADGYSGSDLKNLCVTAAHC 1168 (1183)
Q Consensus 1120 d~eeR~e----ILk~iL~k~----~l----~~didl~~LA~~TeGySg~DL~~L~~~Aa~~ 1168 (1183)
...+|.+ ++++++.+. .. ..+..+..|....=.-..++|+++++.|+..
T Consensus 311 pLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 311 SLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred ChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 8777644 555565542 11 2333344554443233557888888877754
No 260
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=7e-06 Score=94.80 Aligned_cols=132 Identities=17% Similarity=0.206 Sum_probs=86.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCc-------------------------EEEEecCcc---cccc-ccchHHHH
Q 001031 982 KPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------------------FINISMSSI---TSKW-FGEGEKYV 1032 (1183)
Q Consensus 982 kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p-------------------------fi~I~~s~L---~s~~-~GesE~~I 1032 (1183)
+-++.+||+||+|+|||++|+.+|+.+.+. |+.+....- .++. ..-....+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 455789999999999999999999987431 223322100 0000 00123456
Q ss_pred HHHHHHHhc----cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHh
Q 001031 1033 KAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR 1108 (1183)
Q Consensus 1033 r~lF~~A~k----~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr 1108 (1183)
+.+...+.. ....|++||+++.| + ....+.++..++... ..+.+|.+|+.++.+.+++.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L-----d-------~~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM-----N-------LQAANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC-----C-------HHHHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHH
Confidence 776666653 23469999999988 2 122334444444332 336677788888899999999
Q ss_pred ccCcEEEecCCCHHHHHHHHHH
Q 001031 1109 RLPRRLMVNLPDAPNREKIIRV 1130 (1183)
Q Consensus 1109 RFd~vI~I~lPd~eeR~eILk~ 1130 (1183)
|+ ..+.|+.|+.++..+.+..
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 99 7888999998887766653
No 261
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.21 E-value=1.4e-06 Score=87.88 Aligned_cols=105 Identities=24% Similarity=0.476 Sum_probs=63.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRREN 1061 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg---~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~ 1061 (1183)
..|||+|++||||+++|++|....+ .+|+.++|..+. ..++..+ ..+.|||+|||.| +
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L-----~ 82 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRL-----S 82 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS------
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHC-----C
Confidence 4699999999999999999998774 466666665532 2344444 6689999999998 2
Q ss_pred cchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCC-------CCCcHHHHhccCcEEEecCC
Q 001031 1062 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLP 1119 (1183)
Q Consensus 1062 ~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~I~lP 1119 (1183)
...+. .++..+... ...++.+|+++... ..+++.+..||. .+.+.+|
T Consensus 83 ~~~Q~-------~L~~~l~~~---~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~-~~~i~lP 136 (138)
T PF14532_consen 83 PEAQR-------RLLDLLKRQ---ERSNVRLIASSSQDLEELVEEGRFSPDLYYRLS-QLEIHLP 136 (138)
T ss_dssp HHHHH-------HHHHHHHHC---TTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCS-TCEEEE-
T ss_pred HHHHH-------HHHHHHHhc---CCCCeEEEEEeCCCHHHHhhccchhHHHHHHhC-CCEEeCC
Confidence 22222 222222221 12456777777542 246677777874 2344444
No 262
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.17 E-value=4.5e-06 Score=103.43 Aligned_cols=190 Identities=25% Similarity=0.283 Sum_probs=108.9
Q ss_pred hhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 001031 927 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 1006 (1183)
Q Consensus 927 ~~E~ek~ll~~iIp~~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~ 1006 (1183)
..+....+.+.++| .|.|++.+|+.|.-.+.- .-......+...+.--+|||.|.||||||.|.+.+++
T Consensus 273 ~~~i~~~l~~SiaP---------sIyG~e~VKkAilLqLfg--Gv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~ 341 (682)
T COG1241 273 RPDIYDILIKSIAP---------SIYGHEDVKKAILLQLFG--GVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAK 341 (682)
T ss_pred CCcHHHHHHHHhcc---------cccCcHHHHHHHHHHhcC--CCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHh
Confidence 33444445555555 688999999888543321 1112222222233345799999999999999999998
Q ss_pred HhCCcEEEE-ecCc---cccccccchHHHHHHHHHHH---hccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhh
Q 001031 1007 EAGANFINI-SMSS---ITSKWFGEGEKYVKAVFSLA---SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1079 (1183)
Q Consensus 1007 eLg~pfi~I-~~s~---L~s~~~GesE~~Ir~lF~~A---~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~L 1079 (1183)
.+...++.- .++. |......... ..++.-+| -...++|..|||+|.| +.....++...+.+-...+
T Consensus 342 ~aPr~vytsgkgss~~GLTAav~rd~~--tge~~LeaGALVlAD~Gv~cIDEfdKm-----~~~dr~aihEaMEQQtIsI 414 (682)
T COG1241 342 LAPRGVYTSGKGSSAAGLTAAVVRDKV--TGEWVLEAGALVLADGGVCCIDEFDKM-----NEEDRVAIHEAMEQQTISI 414 (682)
T ss_pred hCCceEEEccccccccCceeEEEEccC--CCeEEEeCCEEEEecCCEEEEEeccCC-----ChHHHHHHHHHHHhcEeee
Confidence 885544432 1111 1111000000 00000011 1234689999999988 3333344444444333333
Q ss_pred --cCCcccCCCCEEEEEecCCCC-------------CCcHHHHhccCcEEEe-cCCCHHHHHHHHHHHHhh
Q 001031 1080 --DGLRTKDKERVLVLAATNRPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAK 1134 (1183)
Q Consensus 1080 --dgl~~k~~~~VlVIaTTN~p~-------------~Ld~aLlrRFd~vI~I-~lPd~eeR~eILk~iL~k 1134 (1183)
.|+...-+.+.-|+|++|+.. +|++.|++|||.++.+ +.|+.+.-..+.++++..
T Consensus 415 aKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~ 485 (682)
T COG1241 415 AKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDK 485 (682)
T ss_pred cccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHH
Confidence 244444467788999999854 5778999999976655 567776555555555543
No 263
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.14 E-value=8.7e-06 Score=94.16 Aligned_cols=111 Identities=21% Similarity=0.339 Sum_probs=66.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc---hHHHHHHHHHHHhccCCeEEEEeCCcccccC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE---GEKYVKAVFSLASKIAPSVVFVDEVDSMLGR 1058 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~~Ge---sE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~ 1058 (1183)
.+++|+||+|+|||+||.+||+++ |..++.++..+++...... ........+... ....+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~-- 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEK-- 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCC--
Confidence 689999999999999999999987 7888888887765532110 000111112222 244799999997552
Q ss_pred CCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCC-CCC----CcHHHHhcc
Q 001031 1059 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PFD----LDEAVVRRL 1110 (1183)
Q Consensus 1059 r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~-p~~----Ld~aLlrRF 1110 (1183)
.++...+.+..+++..+.. +-.+|.|||. +.. +++.+.+|+
T Consensus 260 -~t~~~~~~Lf~iin~R~~~----------~k~tIiTSNl~~~el~~~~~eri~SRL 305 (329)
T PRK06835 260 -ITEFSKSELFNLINKRLLR----------QKKMIISTNLSLEELLKTYSERISSRL 305 (329)
T ss_pred -CCHHHHHHHHHHHHHHHHC----------CCCEEEECCCCHHHHHHHHhHHHHHHH
Confidence 2222333444444443321 1235666764 332 456777775
No 264
>PF13173 AAA_14: AAA domain
Probab=98.14 E-value=8.6e-06 Score=81.20 Aligned_cols=118 Identities=20% Similarity=0.294 Sum_probs=68.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP 1062 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg--~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~ 1062 (1183)
+-++|+||.|+|||+|++.+++.+. -.++.+++.+.........+ +...|.......+.+||||||+.+ +
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~------~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL------P 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh------c
Confidence 3589999999999999999998876 77888887764332111111 223333222236689999999876 1
Q ss_pred chHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCC----cHHHHhccCcEEEecCCCHHH
Q 001031 1063 GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL----DEAVVRRLPRRLMVNLPDAPN 1123 (1183)
Q Consensus 1063 ~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~L----d~aLlrRFd~vI~I~lPd~ee 1123 (1183)
... ..+..+. +. . .++.+|.|++....+ .+.+..|+ ..+++.+.+..|
T Consensus 75 ~~~----~~lk~l~---d~----~-~~~~ii~tgS~~~~l~~~~~~~l~gr~-~~~~l~Plsf~E 126 (128)
T PF13173_consen 75 DWE----DALKFLV---DN----G-PNIKIILTGSSSSLLSKDIAESLAGRV-IEIELYPLSFRE 126 (128)
T ss_pred cHH----HHHHHHH---Hh----c-cCceEEEEccchHHHhhcccccCCCeE-EEEEECCCCHHH
Confidence 111 2222222 21 1 235555555443333 33444465 456676666554
No 265
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.12 E-value=1.2e-05 Score=92.29 Aligned_cols=70 Identities=23% Similarity=0.364 Sum_probs=48.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccch-HHHHHHHHHHHhccCCeEEEEeCCccc
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~~Ges-E~~Ir~lF~~A~k~~PsILfIDEID~L 1055 (1183)
..|++|+||+|+|||+|+.|||+++ |.++..+..++++....... .......+... ....||+||||..-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 4689999999999999999999998 78888888777654321110 00122222222 24579999999643
No 266
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.11 E-value=2.1e-05 Score=95.50 Aligned_cols=175 Identities=19% Similarity=0.190 Sum_probs=99.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe-cCcccc--cccc
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS-MSSITS--KWFG 1026 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~-~s~L~s--~~~G 1026 (1183)
.|.+++++|+.|.-.+ +-.....+.+++-.+.--+|||+|.||||||.|.+++++.+..-.+.-. .+.-.+ -++.
T Consensus 430 sIye~edvKkglLLqL--fGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQL--FGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHHHH--hcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 6788999998874333 2222333444443444567999999999999999999988743322210 000000 0000
Q ss_pred chHHHHHHHHHH---HhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHH--HhhcCCcccCCCCEEEEEecCCCC-
Q 001031 1027 EGEKYVKAVFSL---ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFM--VNWDGLRTKDKERVLVLAATNRPF- 1100 (1183)
Q Consensus 1027 esE~~Ir~lF~~---A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL--~~Ldgl~~k~~~~VlVIaTTN~p~- 1100 (1183)
. ....+++.-+ .--...+|-.|||+|.|- ......+-.++++-. ...-|+-..-+.+.-|||++|+..
T Consensus 508 r-d~dtkqlVLesGALVLSD~GiCCIDEFDKM~-----dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~s 581 (804)
T KOG0478|consen 508 K-DPDTRQLVLESGALVLSDNGICCIDEFDKMS-----DSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRS 581 (804)
T ss_pred e-cCccceeeeecCcEEEcCCceEEchhhhhhh-----HHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccc
Confidence 0 0000011000 012245799999999982 222333333433322 233454444567888999999632
Q ss_pred ------------CCcHHHHhccCcEEE-ecCCCHHHHHHHHHHHH
Q 001031 1101 ------------DLDEAVVRRLPRRLM-VNLPDAPNREKIIRVIL 1132 (1183)
Q Consensus 1101 ------------~Ld~aLlrRFd~vI~-I~lPd~eeR~eILk~iL 1132 (1183)
.|++.|++||+.++. ++.||...-+.|..++.
T Consensus 582 kynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 582 KYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIV 626 (804)
T ss_pred cCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHH
Confidence 578999999987654 47777664455555544
No 267
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.11 E-value=1.4e-05 Score=78.14 Aligned_cols=54 Identities=30% Similarity=0.505 Sum_probs=41.3
Q ss_pred HHHHHHHHhhccCC-CCEEEEEcChhhhhcCC--------hhhHHHHHHHHhcCCC---CEEEEEeccC
Q 001031 690 INELFEVALNESKS-SPLIVFVKDIEKSLTGN--------NDAYGALKSKLENLPS---NVVVIGSHTQ 746 (1183)
Q Consensus 690 ~~~l~evl~s~~~~-~P~Ilf~~Die~~l~~~--------~~~~~~i~~~L~~L~g---~vivIgs~~~ 746 (1183)
+..+|+.+.. . .|.||||||+|.+.... ....+.+...|++... +++|||++|+
T Consensus 46 i~~~~~~~~~---~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 46 IRDFFKKAKK---SAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp HHHHHHHHHH---TSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred cccccccccc---cccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 4445555444 3 49999999999988765 6677778888888865 6999999994
No 268
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.09 E-value=5.7e-05 Score=84.55 Aligned_cols=113 Identities=19% Similarity=0.303 Sum_probs=74.4
Q ss_pred CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCC------------CCCCcHHHHhcc
Q 001031 1043 APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR------------PFDLDEAVVRRL 1110 (1183)
Q Consensus 1043 ~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~------------p~~Ld~aLlrRF 1110 (1183)
-|+||||||++.| +-....++++.+.. +-.++++++ ||+ |+-++-.|++|.
T Consensus 288 vpGVLFIDEvHML-----DIEcFsFlNrAlE~-----------d~~Piiima-TNrgit~iRGTn~~SphGiP~D~lDR~ 350 (454)
T KOG2680|consen 288 VPGVLFIDEVHML-----DIECFSFLNRALEN-----------DMAPIIIMA-TNRGITRIRGTNYRSPHGIPIDLLDRM 350 (454)
T ss_pred ccceEEEeeehhh-----hhHHHHHHHHHhhh-----------ccCcEEEEE-cCCceEEeecCCCCCCCCCcHHHhhhh
Confidence 4789999999876 11122222222211 123455444 443 678889999998
Q ss_pred CcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1111 PRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1111 d~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
.+|.-.+.+.++..+|++..+..+.+. ++..++.|......-+-+---+|+..|.+.+.++.
T Consensus 351 -lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk 413 (454)
T KOG2680|consen 351 -LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRK 413 (454)
T ss_pred -heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 677778889999999999999876654 44445556555555556666778888888887764
No 269
>PRK06526 transposase; Provisional
Probab=98.08 E-value=6.5e-06 Score=92.00 Aligned_cols=70 Identities=24% Similarity=0.356 Sum_probs=45.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc-hHHHHHHHHHHHhccCCeEEEEeCCccc
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~~Ge-sE~~Ir~lF~~A~k~~PsILfIDEID~L 1055 (1183)
..+++|+||||||||+||.+|+.++ |..++.+.+.+++...... ....+...+.. -..+.+|+|||++.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccC
Confidence 3689999999999999999998876 6676666665554332110 00111122221 134689999999876
No 270
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.08 E-value=4.2e-06 Score=88.67 Aligned_cols=69 Identities=28% Similarity=0.472 Sum_probs=45.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccch-HHHHHHHHHHHhccCCeEEEEeCCcc
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDS 1054 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~~Ges-E~~Ir~lF~~A~k~~PsILfIDEID~ 1054 (1183)
..+++|+||+|+|||+||.+|++++ |.++..++.++++....... .......+.... ...+|+|||+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccce
Confidence 4689999999999999999999886 88888898887765432110 011222333222 347999999964
No 271
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.08 E-value=6.5e-06 Score=101.58 Aligned_cols=131 Identities=15% Similarity=0.159 Sum_probs=88.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCccccccccch--HHHH--------HHHHHHHhccCCeEEEEeCC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKWFGEG--EKYV--------KAVFSLASKIAPSVVFVDEV 1052 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg--~pfi~I~~s~L~s~~~Ges--E~~I--------r~lF~~A~k~~PsILfIDEI 1052 (1183)
.||||.|++||||++++++++..+. .||+.+..+.-....+|.. +..+ ..++..| ..+||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A---h~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEA---DGGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeec---cCCEEEecCc
Confidence 5899999999999999999999984 5888876655444444432 1111 1122222 2379999999
Q ss_pred cccccCCCCcchHHHHHHHHHHHHHhh--cCCcccCCCCEEEEEecCCC---CCCcHHHHhccCcEEEecCCCHHH
Q 001031 1053 DSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDAPN 1123 (1183)
Q Consensus 1053 D~Ll~~r~~~~~~e~l~~il~~LL~~L--dgl~~k~~~~VlVIaTTN~p---~~Ld~aLlrRFd~vI~I~lPd~ee 1123 (1183)
..+ .+...+.+...+.+-...+ ++....-+.++++|+|-|.. +.|.+.+++||+..+.+..|...+
T Consensus 103 n~~-----~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~ 173 (584)
T PRK13406 103 ERL-----EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRD 173 (584)
T ss_pred ccC-----CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHH
Confidence 876 3334444444444433334 55555566889999985432 468999999999999998877543
No 272
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.06 E-value=5.3e-07 Score=104.22 Aligned_cols=171 Identities=26% Similarity=0.369 Sum_probs=84.6
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC----cc-----
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMS----SI----- 1020 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s----~L----- 1020 (1183)
.|.|.+.+|..+.-.+..... .....+...+..-+|||.|.||+|||.|.+.+++.....++..... .|
T Consensus 25 ~i~g~~~iK~aill~L~~~~~--~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~ 102 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVE--KNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVS 102 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--S--CCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEEC
T ss_pred cCcCcHHHHHHHHHHHHhccc--cccccccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceec
Confidence 678888887776322111000 0000111123345799999999999999999876654444332111 11
Q ss_pred ----ccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhc--CCcccCCCCEEEEE
Q 001031 1021 ----TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--GLRTKDKERVLVLA 1094 (1183)
Q Consensus 1021 ----~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ld--gl~~k~~~~VlVIa 1094 (1183)
.+.|.-+ .+.+-.| ..+|++|||+|.+ .......+..++++-...+. |+...-+.+.-|+|
T Consensus 103 ~d~~~~~~~le-----aGalvla---d~GiccIDe~dk~-----~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svla 169 (331)
T PF00493_consen 103 RDPVTGEWVLE-----AGALVLA---DGGICCIDEFDKM-----KEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLA 169 (331)
T ss_dssp CCGGTSSECEE-----E-HHHHC---TTSEEEECTTTT-------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEE
T ss_pred cccccceeEEe-----CCchhcc---cCceeeecccccc-----cchHHHHHHHHHHcCeeccchhhhcccccchhhhHH
Confidence 1112111 1233334 3489999999988 22223333232222111111 22222346788999
Q ss_pred ecCCCC-------------CCcHHHHhccCcEEEe-cCCCHHHHHHHHHHHHhhc
Q 001031 1095 ATNRPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILAKE 1135 (1183)
Q Consensus 1095 TTN~p~-------------~Ld~aLlrRFd~vI~I-~lPd~eeR~eILk~iL~k~ 1135 (1183)
++|+.. .+++.+++|||.++.+ +.|+.+.-..+.++++...
T Consensus 170 a~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 170 AANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp EE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred HHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecc
Confidence 998754 4677899999977665 7778777777888777653
No 273
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.02 E-value=2.7e-05 Score=87.07 Aligned_cols=70 Identities=24% Similarity=0.421 Sum_probs=48.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHH-HH-HHHHHHHhccCCeEEEEeCCccc
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEK-YV-KAVFSLASKIAPSVVFVDEVDSM 1055 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~~GesE~-~I-r~lF~~A~k~~PsILfIDEID~L 1055 (1183)
+.+++|+||||+|||+||.||++++ |..++.+..++++...-..... .. ..+.... ....+|+|||+-..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCc
Confidence 4689999999999999999999987 7889999988876643211100 01 1111111 23469999999754
No 274
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.02 E-value=2.5e-05 Score=89.15 Aligned_cols=161 Identities=25% Similarity=0.324 Sum_probs=97.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~ 1021 (1183)
...|+.|++....++.+.+.... +. .-...+||.|.+||||-.+|++--... ..||+.++|+.+-
T Consensus 200 ~~~F~~~v~~S~~mk~~v~qA~k-------~A-----mlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQAQK-------LA-----MLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred ccchHHHhhccHHHHHHHHHHHH-------hh-----ccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 34677877777666665443321 11 111359999999999999999875544 7899999997753
Q ss_pred c-----ccccchH--HHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEE
Q 001031 1022 S-----KWFGEGE--KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1094 (1183)
Q Consensus 1022 s-----~~~GesE--~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIa 1094 (1183)
. ..+|... +--..+|+.|.. +-+|+|||..| ++..+..+-++++.-....-|-...-...|.||+
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEm-----Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIc 339 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEM-----SPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVIC 339 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhc-----CHHHHHHHHHHhcCCceeecCCcceEEEEEEEEe
Confidence 2 2333322 234567777755 78999999877 3333333322222111111111111246799999
Q ss_pred ecCCC-------CCCcHHHHhccCcEEEecCCCHHHHHH
Q 001031 1095 ATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNREK 1126 (1183)
Q Consensus 1095 TTN~p-------~~Ld~aLlrRFd~vI~I~lPd~eeR~e 1126 (1183)
||..+ ..+-+.+.-|+ .++.+.+|...+|..
T Consensus 340 atq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~ 377 (511)
T COG3283 340 ATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQ 377 (511)
T ss_pred cccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcc
Confidence 99653 33445555677 688899998777743
No 275
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.00 E-value=2.8e-05 Score=76.49 Aligned_cols=72 Identities=21% Similarity=0.381 Sum_probs=47.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--------CCcEEEEecCccccc--------------cc--cchHHHHHHHHHHHh
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA--------GANFINISMSSITSK--------------WF--GEGEKYVKAVFSLAS 1040 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL--------g~pfi~I~~s~L~s~--------------~~--GesE~~Ir~lF~~A~ 1040 (1183)
..++|+||+|+|||++++.++..+ ..+++.++++..... .. .........+.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 469999999999999999999887 678888876542210 00 112333444444445
Q ss_pred ccCCeEEEEeCCcccc
Q 001031 1041 KIAPSVVFVDEVDSML 1056 (1183)
Q Consensus 1041 k~~PsILfIDEID~Ll 1056 (1183)
+....+|+|||+|.|.
T Consensus 85 ~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF 100 (131)
T ss_dssp HCTEEEEEEETTHHHH
T ss_pred hcCCeEEEEeChHhcC
Confidence 5555699999999873
No 276
>PRK06921 hypothetical protein; Provisional
Probab=97.98 E-value=1.9e-05 Score=88.76 Aligned_cols=67 Identities=25% Similarity=0.353 Sum_probs=43.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDS 1054 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL----g~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~ 1054 (1183)
.+++|+|++|+|||+|+.+||+++ +..++.+...+++....... ......+.. -....+|+|||++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 579999999999999999999986 56777777655443211100 111111111 12457999999953
No 277
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=0.00013 Score=83.00 Aligned_cols=121 Identities=13% Similarity=0.100 Sum_probs=78.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEE--------EEecCcccccc-cc----chHHHHHHHHHHHhcc----CC
Q 001031 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI--------NISMSSITSKW-FG----EGEKYVKAVFSLASKI----AP 1044 (1183)
Q Consensus 982 kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi--------~I~~s~L~s~~-~G----esE~~Ir~lF~~A~k~----~P 1044 (1183)
+-++.+||+||.|+||+.+|.++|+.+-+.-. .-..+++..-. .+ -....++.+-..+... .-
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 44578999999999999999999998854210 00112221100 01 1133455555544432 33
Q ss_pred eEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCC
Q 001031 1045 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLP 1119 (1183)
Q Consensus 1045 sILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lP 1119 (1183)
.|++||++|.|- ....|.|+..++. ++.++++|..|+.++.|.+++++|+ ..+.|+.+
T Consensus 97 kv~ii~~ad~mt------------~~AaNaLLK~LEE----Pp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 97 KIYIIHEADRMT------------LDAISAFLKVLED----PPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred eEEEEechhhcC------------HHHHHHHHHHhhc----CCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 699999999882 2234555555554 4477899999999999999999999 56666554
No 278
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.98 E-value=5.3e-05 Score=83.64 Aligned_cols=137 Identities=17% Similarity=0.188 Sum_probs=80.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcch
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~ 1064 (1183)
.+-.++||.|||||.+++.+|+.+|.+++.++|++.++ ...+.++|.-+... .+.+.+||+++| +...
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl-----~~~v 100 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRL-----SEEV 100 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCS-----SHHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhh-----hHHH
Confidence 46679999999999999999999999999999988543 34677777766664 589999999988 2222
Q ss_pred HHHHHHHHHHHHHhhcCCc---------ccCCCCEEEEEecCC----CCCCcHHHHhccCcEEEecCCCHHHHHHHHHHH
Q 001031 1065 HEAMRKMKNEFMVNWDGLR---------TKDKERVLVLAATNR----PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVI 1131 (1183)
Q Consensus 1065 ~e~l~~il~~LL~~Ldgl~---------~k~~~~VlVIaTTN~----p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~i 1131 (1183)
-......+..+...+..-. ..-+..+-+..|.|+ ...|++.++.-| +.+.+..||...- .+.+
T Consensus 101 LS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I---~ei~ 176 (231)
T PF12774_consen 101 LSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLI---AEIL 176 (231)
T ss_dssp HHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHH---HHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHH---HHHH
Confidence 2222222333333222111 011233455566664 357888888888 8899999987754 4444
Q ss_pred HhhccC
Q 001031 1132 LAKEEL 1137 (1183)
Q Consensus 1132 L~k~~l 1137 (1183)
+-..++
T Consensus 177 L~s~GF 182 (231)
T PF12774_consen 177 LLSQGF 182 (231)
T ss_dssp HHCCCT
T ss_pred HHHcCc
Confidence 444443
No 279
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=97.97 E-value=1.2e-05 Score=67.23 Aligned_cols=50 Identities=32% Similarity=0.447 Sum_probs=43.2
Q ss_pred eEEccCC-ccceeecCCCCCccceEEEEeecCCcceEEEEEec-CCceEEEcCeec
Q 001031 154 FTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVH 207 (1183)
Q Consensus 154 ~t~G~~~-~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~-~~G~v~vNg~~~ 207 (1183)
++|||.. .||+.++++.+|..||+|..... + ..+|++.+ .+|+ +|||+.+
T Consensus 1 ~~iGr~~~~~~i~~~~~~vs~~H~~i~~~~~-~--~~~i~d~~s~~gt-~vng~~v 52 (52)
T smart00240 1 VTIGRSSEDCDIQLPGPSISRRHAEIVYDGG-G--RFYLIDLGSTNGT-FVNGKRI 52 (52)
T ss_pred CEeCCCCCCCCEEeCCCCcchhHcEEEECCC-C--eEEEEECCCCCCe-eECCEEC
Confidence 5899999 99999999999999999987533 3 47899999 7788 7999875
No 280
>PRK09183 transposase/IS protein; Provisional
Probab=97.96 E-value=2.1e-05 Score=88.05 Aligned_cols=71 Identities=27% Similarity=0.414 Sum_probs=48.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc-hHHHHHHHHHHHhccCCeEEEEeCCccc
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~~Ge-sE~~Ir~lF~~A~k~~PsILfIDEID~L 1055 (1183)
..+++|+||||+|||+||.+|+..+ |..+..+++.++...+... ....+..+|... ...+.+++|||++.+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 3579999999999999999998764 7777777766655332110 011233444433 235689999999865
No 281
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.96 E-value=2.2e-05 Score=88.56 Aligned_cols=139 Identities=21% Similarity=0.347 Sum_probs=79.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-Cc--EEEEecCccccccccchHHHHHHHHHHH-----------hccCCeEEEEe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG-AN--FINISMSSITSKWFGEGEKYVKAVFSLA-----------SKIAPSVVFVD 1050 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg-~p--fi~I~~s~L~s~~~GesE~~Ir~lF~~A-----------~k~~PsILfID 1050 (1183)
+++||+||+|||||++++.+...+. .. ...++++... +...+..+.+.. ...+..|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 5799999999999999998877663 22 2334443211 112222222111 01123599999
Q ss_pred CCcccccCCCCcchHHHHHHHHHHHHHhhcCCccc------CCCCEEEEEecCCC---CCCcHHHHhccCcEEEecCCCH
Q 001031 1051 EVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDA 1121 (1183)
Q Consensus 1051 EID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k------~~~~VlVIaTTN~p---~~Ld~aLlrRFd~vI~I~lPd~ 1121 (1183)
|++.- .....+.+.. -.++.+++.. .|+... .-.++.+||++++. ..+++.++|.| .++.++.|+.
T Consensus 108 DlN~p--~~d~ygtq~~-iElLRQ~i~~-~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p~~ 182 (272)
T PF12775_consen 108 DLNMP--QPDKYGTQPP-IELLRQLIDY-GGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPYPSD 182 (272)
T ss_dssp TTT-S-----TTS--HH-HHHHHHHHHC-SEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE----TC
T ss_pred ccCCC--CCCCCCCcCH-HHHHHHHHHh-cCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecCCCh
Confidence 99843 3222233332 2445555433 122211 12568899998864 35888999999 7899999999
Q ss_pred HHHHHHHHHHHhh
Q 001031 1122 PNREKIIRVILAK 1134 (1183)
Q Consensus 1122 eeR~eILk~iL~k 1134 (1183)
+....|+..++..
T Consensus 183 ~sl~~If~~il~~ 195 (272)
T PF12775_consen 183 ESLNTIFSSILQS 195 (272)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999998888764
No 282
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.96 E-value=1.5e-05 Score=99.60 Aligned_cols=84 Identities=19% Similarity=0.242 Sum_probs=71.5
Q ss_pred CCCceee---ecceeEEccCCccce-----eecCCCCCccceEEEEeecCCcceEEEEEecC-CceEEEcCee-----cC
Q 001031 143 QNSHLSM---TGAVFTVGHNRQCDL-----YLKDPSISKNLCRLRRIENGGPSGALLEITGG-KGEVEVNGNV-----HP 208 (1183)
Q Consensus 143 ~~p~~~i---~~~~~t~G~~~~cd~-----~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~~-~G~v~vNg~~-----~~ 208 (1183)
+...++| -+--|.|||..+||+ .++|+.+|..|.+|... ++. .||||.+| ||| +|||+. +.
T Consensus 545 ~~~~~~l~~~~~~p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~~~--~~~--~~~~Dl~S~nGT-~v~~~~~~r~~~~ 619 (668)
T PLN02927 545 VSETLCLTKDEDQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYK--DGA--FFLMDLRSEHGT-YVTDNEGRRYRAT 619 (668)
T ss_pred ccceeeeecCCCCCeEecCCCCcCCCCceEEecCCccChhHeEEEEE--CCE--EEEEECCCCCcc-EEeCCCCceEecC
Confidence 3456888 567899999999997 99999999999999976 333 89999887 899 699888 45
Q ss_pred CCceEEeeCCCEEEEccCCCeeE
Q 001031 209 KDSQVVLRGGDELVFSPSGKHSY 231 (1183)
Q Consensus 209 k~~~~~L~~gDev~f~~~~~~ay 231 (1183)
-|..+.|++||+|.|+..++.+|
T Consensus 620 p~~~~~l~~~d~I~~g~~~~~~f 642 (668)
T PLN02927 620 PNFPARFRSSDIIEFGSDKKAAF 642 (668)
T ss_pred CCCceEeCCCCEEEeCCCcceeE
Confidence 67799999999999999877555
No 283
>PF05729 NACHT: NACHT domain
Probab=97.91 E-value=0.00011 Score=74.55 Aligned_cols=140 Identities=15% Similarity=0.257 Sum_probs=73.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC--------CcE-EEEecCcccccc------------ccchHHHHHH-HHHHHhccC
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAG--------ANF-INISMSSITSKW------------FGEGEKYVKA-VFSLASKIA 1043 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg--------~pf-i~I~~s~L~s~~------------~GesE~~Ir~-lF~~A~k~~ 1043 (1183)
-++|+|+||+|||++++.++..+. ..+ +.+.+.+..... .......+.. +...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 489999999999999999987761 122 233333221110 0011111121 122334456
Q ss_pred CeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccC--cEEEecCCCH
Q 001031 1044 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP--RRLMVNLPDA 1121 (1183)
Q Consensus 1044 PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd--~vI~I~lPd~ 1121 (1183)
..+|+||.+|.+...... ........++..++. .. ...++.+|.|+++. .... +.+.+. ..+.+...+.
T Consensus 82 ~~llilDglDE~~~~~~~-~~~~~~~~~l~~l~~---~~---~~~~~~liit~r~~-~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-QERQRLLDLLSQLLP---QA---LPPGVKLIITSRPR-AFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh-hHHHHHHHHHHHHhh---hc---cCCCCeEEEEEcCC-hHHH-HHHhcCCCcEEEECCCCH
Confidence 679999999998532211 011112222333322 20 11234455444332 2211 333332 4588888899
Q ss_pred HHHHHHHHHHHhh
Q 001031 1122 PNREKIIRVILAK 1134 (1183)
Q Consensus 1122 eeR~eILk~iL~k 1134 (1183)
+++.++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999998754
No 284
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.91 E-value=5.6e-05 Score=75.94 Aligned_cols=71 Identities=23% Similarity=0.426 Sum_probs=47.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc----------------------ccc--chHHHHHHHHHHH
Q 001031 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------------WFG--EGEKYVKAVFSLA 1039 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~----------------------~~G--esE~~Ir~lF~~A 1039 (1183)
++|+||||+|||+++..++..+ +.+++.++....... +.. .........+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998887 566776665432210 000 1111222344566
Q ss_pred hccCCeEEEEeCCccccc
Q 001031 1040 SKIAPSVVFVDEVDSMLG 1057 (1183)
Q Consensus 1040 ~k~~PsILfIDEID~Ll~ 1057 (1183)
....+.+|+|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 677889999999998853
No 285
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.88 E-value=4.3e-05 Score=90.15 Aligned_cols=186 Identities=25% Similarity=0.336 Sum_probs=113.2
Q ss_pred hhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 001031 927 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 1006 (1183)
Q Consensus 927 ~~E~ek~ll~~iIp~~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~ 1006 (1183)
..++.+.+...+.| +|.|++++|+.|.-++.--..+ ....+--.+..-+|+|.|.||+.|+.|.++|.+
T Consensus 329 ~~d~yekLa~SiAP---------EIyGheDVKKaLLLlLVGgvd~--~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~r 397 (721)
T KOG0482|consen 329 EGDFYEKLAASIAP---------EIYGHEDVKKALLLLLVGGVDK--SPGDGMKIRGDINICLMGDPGVAKSQLLKYISR 397 (721)
T ss_pred cccHHHHHHHhhch---------hhccchHHHHHHHHHhhCCCCC--CCCCCceeecceeEEecCCCchhHHHHHHHHHh
Confidence 44555566666655 7899999999986555321111 111121123345699999999999999999998
Q ss_pred HhCCcEEEEec-Cc--------cccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHH
Q 001031 1007 EAGANFINISM-SS--------ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1183)
Q Consensus 1007 eLg~pfi~I~~-s~--------L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~ 1077 (1183)
-.....+.-.- +. +.....|++.- -.+.+-.| ..+|-.|||+|.|.. .+..+.-.++.+-..
T Consensus 398 lapRgvYTTGrGSSGVGLTAAVmkDpvTgEM~L-EGGALVLA---D~GICCIDEfDKM~e-----~DRtAIHEVMEQQTI 468 (721)
T KOG0482|consen 398 LAPRGVYTTGRGSSGVGLTAAVMKDPVTGEMVL-EGGALVLA---DGGICCIDEFDKMDE-----SDRTAIHEVMEQQTI 468 (721)
T ss_pred cCcccceecCCCCCccccchhhhcCCCCCeeEe-ccceEEEc---cCceEeehhhhhhhh-----hhhHHHHHHHHhhhh
Confidence 77544443221 11 11111111100 00011111 347999999999942 233333444443333
Q ss_pred hh--cCCcccCCCCEEEEEecCCCC-------------CCcHHHHhccCcEEEe-cCCCHHHHHHHHHHHH
Q 001031 1078 NW--DGLRTKDKERVLVLAATNRPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVIL 1132 (1183)
Q Consensus 1078 ~L--dgl~~k~~~~VlVIaTTN~p~-------------~Ld~aLlrRFd~vI~I-~lPd~eeR~eILk~iL 1132 (1183)
.+ -|+.+.-+.+.-|+|++|+.+ .|+.++++||+..|.+ +.|+.+.-..+.+++.
T Consensus 469 SIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiT 539 (721)
T KOG0482|consen 469 SIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHIT 539 (721)
T ss_pred hhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhH
Confidence 33 466666678889999998742 5889999999977655 7899888888877765
No 286
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.87 E-value=0.0005 Score=78.39 Aligned_cols=122 Identities=12% Similarity=0.109 Sum_probs=77.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEE-------EE---------ecCcccccc-ccc--hHHHHHHHHHHHhcc
Q 001031 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANFI-------NI---------SMSSITSKW-FGE--GEKYVKAVFSLASKI 1042 (1183)
Q Consensus 982 kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi-------~I---------~~s~L~s~~-~Ge--sE~~Ir~lF~~A~k~ 1042 (1183)
+.++.+||+|| .||+.+|+++|..+-+.-. .+ +.+++.--. .|. ....|+.+...+...
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 45578999996 6899999999988733210 00 112221100 011 124566655544432
Q ss_pred ----CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecC
Q 001031 1043 ----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 1118 (1183)
Q Consensus 1043 ----~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~l 1118 (1183)
...|++||++|.|- ....|.|+..++. ++.++++|.+|+.++.|.+++++|+ ..+.|+.
T Consensus 100 p~~~~~kV~II~~ad~m~------------~~AaNaLLKtLEE----Pp~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~ 162 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH------------VNAANSLLKVIEE----PQSEIYIFLLTNDENKVLPTIKSRT-QIFHFPK 162 (290)
T ss_pred cccCCcEEEEeehhhhcC------------HHHHHHHHHHhcC----CCCCeEEEEEECChhhCchHHHHcc-eeeeCCC
Confidence 34699999999882 2334566666654 3466889999999999999999999 6777755
Q ss_pred CCHHH
Q 001031 1119 PDAPN 1123 (1183)
Q Consensus 1119 Pd~ee 1123 (1183)
+.++
T Consensus 163 -~~~~ 166 (290)
T PRK07276 163 -NEAY 166 (290)
T ss_pred -cHHH
Confidence 4333
No 287
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.82 E-value=6.7e-05 Score=90.78 Aligned_cols=216 Identities=19% Similarity=0.241 Sum_probs=124.5
Q ss_pred hhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 001031 927 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 1006 (1183)
Q Consensus 927 ~~E~ek~ll~~iIp~~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~ 1006 (1183)
.....+.+.+.+.| .|.|++.+|.-|.-.+.--.... -..+.-.+.-.+|+|.|.||+||+.+.++++.
T Consensus 332 ~~nly~~lv~Sl~P---------sIyGhe~VK~GilL~LfGGv~K~--a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~ 400 (764)
T KOG0480|consen 332 DENLYKNLVNSLFP---------SIYGHELVKAGILLSLFGGVHKS--AGEGTSLRGDINVCIVGDPGTGKSQFLKAVCA 400 (764)
T ss_pred CchHHHHHHHhhCc---------cccchHHHHhhHHHHHhCCcccc--CCCCccccCCceEEEeCCCCccHHHHHHHHhc
Confidence 44455556665555 68999999988754332211110 00111122334699999999999999999998
Q ss_pred HhCCcEEEEecCc----cccccccchHH--H-H-HHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHh
Q 001031 1007 EAGANFINISMSS----ITSKWFGEGEK--Y-V-KAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1078 (1183)
Q Consensus 1007 eLg~pfi~I~~s~----L~s~~~GesE~--~-I-r~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~ 1078 (1183)
-+...++...-+. |....+...+. + + .+++-. ...+|-.|||+|.| +..++.++...+.+-...
T Consensus 401 fsPR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmL---ADnGICCIDEFDKM-----d~~dqvAihEAMEQQtIS 472 (764)
T KOG0480|consen 401 FSPRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALML---ADNGICCIDEFDKM-----DVKDQVAIHEAMEQQTIS 472 (764)
T ss_pred cCCcceEecCcccccccceEEEEecCCCCceeeecCcEEE---ccCceEEechhccc-----ChHhHHHHHHHHHhheeh
Confidence 8766555442211 11111110000 0 0 001111 23489999999998 333455555544443333
Q ss_pred h--cCCcccCCCCEEEEEecCCCC-------------CCcHHHHhccCcEE-EecCCCHHHHHHHHHHHHhhccCCChhh
Q 001031 1079 W--DGLRTKDKERVLVLAATNRPF-------------DLDEAVVRRLPRRL-MVNLPDAPNREKIIRVILAKEELASDVD 1142 (1183)
Q Consensus 1079 L--dgl~~k~~~~VlVIaTTN~p~-------------~Ld~aLlrRFd~vI-~I~lPd~eeR~eILk~iL~k~~l~~did 1142 (1183)
+ -|+...-+.+.-|||++|+.. .+..++++||+..+ .++-|+...-..|-++++.......+.
T Consensus 473 IaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~- 551 (764)
T KOG0480|consen 473 IAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDA- 551 (764)
T ss_pred heecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhcccccc-
Confidence 3 233333456778999998742 46789999998654 458899888888999888764322111
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHH
Q 001031 1143 LEGIANMADGYSGSDLKNLCVTAA 1166 (1183)
Q Consensus 1143 l~~LA~~TeGySg~DL~~L~~~Aa 1166 (1183)
..+-..|+..+++..+.-|.
T Consensus 552 ----~~~~~~~~~e~vrkYi~yAR 571 (764)
T KOG0480|consen 552 ----TERVCVYTLEQVRKYIRYAR 571 (764)
T ss_pred ----ccccccccHHHHHHHHHHHH
Confidence 11114566666666655444
No 288
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.81 E-value=0.00021 Score=79.83 Aligned_cols=158 Identities=16% Similarity=0.083 Sum_probs=84.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH--hC--CcE-EEEecCcc----------ccc---c------ccchHHHHHHHHHH
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATE--AG--ANF-INISMSSI----------TSK---W------FGEGEKYVKAVFSL 1038 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~e--Lg--~pf-i~I~~s~L----------~s~---~------~GesE~~Ir~lF~~ 1038 (1183)
...-|.|+|++|+|||+||..+++. .. +.. +.++...- ... . ....+.....+..
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~- 96 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE- 96 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH-
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh-
Confidence 4466999999999999999999987 32 222 22332210 000 0 0112233333433
Q ss_pred HhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecC
Q 001031 1039 ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL 1118 (1183)
Q Consensus 1039 A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~l 1118 (1183)
.-...+.+|+||+++.. . .+..+...+.. ...+..||.||....... .+... ...+.++.
T Consensus 97 ~L~~~~~LlVlDdv~~~----------~----~~~~l~~~~~~----~~~~~kilvTTR~~~v~~-~~~~~-~~~~~l~~ 156 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDE----------E----DLEELREPLPS----FSSGSKILVTTRDRSVAG-SLGGT-DKVIELEP 156 (287)
T ss_dssp HHCCTSEEEEEEEE-SH----------H----HH-------HC----HHSS-EEEEEESCGGGGT-THHSC-EEEEECSS
T ss_pred hhccccceeeeeeeccc----------c----ccccccccccc----cccccccccccccccccc-ccccc-cccccccc
Confidence 33345899999999754 1 11222222211 113466777886643221 11111 36788999
Q ss_pred CCHHHHHHHHHHHHhhcc----CCChhhHHHHHHHcCCCcHHHHHHHH
Q 001031 1119 PDAPNREKIIRVILAKEE----LASDVDLEGIANMADGYSGSDLKNLC 1162 (1183)
Q Consensus 1119 Pd~eeR~eILk~iL~k~~----l~~didl~~LA~~TeGySg~DL~~L~ 1162 (1183)
.+.++-.++|........ -..+.....|++.+.| .+-.|..+.
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~a 203 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLIA 203 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 999999999998875443 1123346788888876 455665554
No 289
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.00074 Score=77.39 Aligned_cols=143 Identities=10% Similarity=0.010 Sum_probs=90.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC-------------cEEEEecCccccccccchHHHHHHHHHHHhc-----cCC
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEAGA-------------NFINISMSSITSKWFGEGEKYVKAVFSLASK-----IAP 1044 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eLg~-------------pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k-----~~P 1044 (1183)
-.+.+||+|+.|.||+.+|+++++.+-+ .++.++. .+... .-..++.+...... ...
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~---~g~~i--~vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDI---FDKDL--SKSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEecc---CCCcC--CHHHHHHHHHHhccCCcccCCc
Confidence 3467899999999999999999998732 1222220 01111 11234444443321 245
Q ss_pred eEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHH
Q 001031 1045 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNR 1124 (1183)
Q Consensus 1045 sILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR 1124 (1183)
-|++||++|.+. ....+.|+..++. ++..+++|.+|+.+..|-+++++|+ .++.+..|+.++.
T Consensus 92 KvvII~~~e~m~------------~~a~NaLLK~LEE----Pp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l 154 (299)
T PRK07132 92 KILIIKNIEKTS------------NSLLNALLKTIEE----PPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKI 154 (299)
T ss_pred eEEEEecccccC------------HHHHHHHHHHhhC----CCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHH
Confidence 799999999872 2234456666655 3356777777778899999999999 7899999988877
Q ss_pred HHHHHHHHhhccCCChhhHHHHHHHcCC
Q 001031 1125 EKIIRVILAKEELASDVDLEGIANMADG 1152 (1183)
Q Consensus 1125 ~eILk~iL~k~~l~~didl~~LA~~TeG 1152 (1183)
.+.+... .+ ++.....+|..+.|
T Consensus 155 ~~~l~~~----~~-~~~~a~~~a~~~~~ 177 (299)
T PRK07132 155 LAKLLSK----NK-EKEYNWFYAYIFSN 177 (299)
T ss_pred HHHHHHc----CC-ChhHHHHHHHHcCC
Confidence 6655432 22 22334445555554
No 290
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=97.70 E-value=0.00016 Score=76.47 Aligned_cols=75 Identities=29% Similarity=0.436 Sum_probs=63.6
Q ss_pred eeeecceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEec-CCceEEEcCeecCCCceEEeeCCCEEEEcc
Q 001031 147 LSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVHPKDSQVVLRGGDELVFSP 225 (1183)
Q Consensus 147 ~~i~~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~-~~G~v~vNg~~~~k~~~~~L~~gDev~f~~ 225 (1183)
..+....+|+||+..+|+.|+|+.+|..||.|+..+.. .+||+.+ +||| +|||.++.. .+.|+.||.|.|+.
T Consensus 84 ~~~~~~~~tigr~~~~~i~~~~~~vSR~Ha~l~~~~~~----~~~~d~~S~nGt-~vn~~~v~~--~~~l~~gd~i~i~~ 156 (191)
T COG1716 84 IVLGEPVTTIGRDPDNDIVLDDDVVSRRHAELRREGNE----VFLEDLGSTNGT-YVNGEKVRQ--RVLLQDGDVIRLGG 156 (191)
T ss_pred cccccceEEeccCCCCCEEcCCCccccceEEEEEeCCc----eEEEECCCCcce-EECCeEccC--cEEcCCCCEEEECc
Confidence 34445689999999999999999999999999987544 6667766 5688 799999998 89999999999987
Q ss_pred CCC
Q 001031 226 SGK 228 (1183)
Q Consensus 226 ~~~ 228 (1183)
...
T Consensus 157 ~~~ 159 (191)
T COG1716 157 TLA 159 (191)
T ss_pred cce
Confidence 765
No 291
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.69 E-value=0.0018 Score=77.95 Aligned_cols=201 Identities=15% Similarity=0.207 Sum_probs=108.6
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc------
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ 1019 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~------ 1019 (1183)
.+.+++.-+.+-+.++++++.. + ..|. .+ -+.+-+||+||+|||||+.++.+++++|..+++...+.
T Consensus 79 ~t~eeLAVHkkKI~eVk~WL~~-~---~~~~-~~--l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~ 151 (634)
T KOG1970|consen 79 RTLEELAVHKKKISEVKQWLKQ-V---AEFT-PK--LGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPE 151 (634)
T ss_pred ccHHHHhhhHHhHHHHHHHHHH-H---HHhc-cC--CCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccc
Confidence 4667777777777777766651 1 1111 11 12234899999999999999999999999998876322
Q ss_pred -cccccccchH------HHHHHHHHHHh------------ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhc
Q 001031 1020 -ITSKWFGEGE------KYVKAVFSLAS------------KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1080 (1183)
Q Consensus 1020 -L~s~~~GesE------~~Ir~lF~~A~------------k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ld 1080 (1183)
+.....+-+. .........+. +..+.+|+|||+-..+... ..+..+.++. ++...
T Consensus 152 ~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d----~~~~f~evL~-~y~s~- 225 (634)
T KOG1970|consen 152 NLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD----DSETFREVLR-LYVSI- 225 (634)
T ss_pred cccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh----hHHHHHHHHH-HHHhc-
Confidence 1111111110 11111222221 1245699999997664221 2333344444 22221
Q ss_pred CCcccCCCCEEEEEec-CCCCCCcHHHH--------hccCcEEEecCCCHHHHHHHHHHHHhhccCC-------ChhhHH
Q 001031 1081 GLRTKDKERVLVLAAT-NRPFDLDEAVV--------RRLPRRLMVNLPDAPNREKIIRVILAKEELA-------SDVDLE 1144 (1183)
Q Consensus 1081 gl~~k~~~~VlVIaTT-N~p~~Ld~aLl--------rRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-------~didl~ 1144 (1183)
..-++++|.|- ..++..+...+ -|+ .+|.|.+-...-..+.|+.++..+... ....++
T Consensus 226 -----g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~ 299 (634)
T KOG1970|consen 226 -----GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVE 299 (634)
T ss_pred -----CCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHH
Confidence 11334444333 33333332211 155 468888877777888888887654322 133345
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHh
Q 001031 1145 GIANMADGYSGSDLKNLCVTAAHCP 1169 (1183)
Q Consensus 1145 ~LA~~TeGySg~DL~~L~~~Aa~~A 1169 (1183)
.++... ++||+..++.-.+-+
T Consensus 300 ~i~~~s----~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 300 LICQGS----GGDIRSAINSLQLSS 320 (634)
T ss_pred HHHHhc----CccHHHHHhHhhhhc
Confidence 555544 457777766665553
No 292
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=2.7e-05 Score=88.05 Aligned_cols=75 Identities=31% Similarity=0.326 Sum_probs=60.9
Q ss_pred cccCCCccccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCe
Q 001031 442 GILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSAR 521 (1183)
Q Consensus 442 ~i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~ 521 (1183)
-++|+.+..==||+-=|= -+-|+-|++=|.+-|+-.++ +-..+|=+-+|=|||-|||| .....|.||||+++.+|
T Consensus 130 w~LPa~eF~glWEsLiyd--s~lK~~ll~Ya~s~l~fsek-~vntnlIt~NRliLlhGPPG--TGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 130 WYLPAAEFDGLWESLIYD--SNLKERLLSYAASALLFSEK-KVNTNLITWNRLILLHGPPG--TGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeccchhhhhhHHHHhhc--ccHHHHHHHHHHHHHHHHhc-CCCCceeeeeeEEEEeCCCC--CChhHHHHHHHHhheee
Confidence 356676666678886554 67788888888778877665 45579999999999999999 68999999999999888
No 293
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.00057 Score=76.58 Aligned_cols=121 Identities=7% Similarity=0.038 Sum_probs=78.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcE--------------EEEecCccccccc-c--chHHHHHHHHHHHh----
Q 001031 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANF--------------INISMSSITSKWF-G--EGEKYVKAVFSLAS---- 1040 (1183)
Q Consensus 982 kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pf--------------i~I~~s~L~s~~~-G--esE~~Ir~lF~~A~---- 1040 (1183)
.+++.+||+||.|+||..+|.++|+.+-+.- ..-..+++.--+. + -....++.+-....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4568899999999999999999998873321 0001122211000 0 11233444443322
Q ss_pred c-cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCC
Q 001031 1041 K-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLP 1119 (1183)
Q Consensus 1041 k-~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lP 1119 (1183)
. ...-|++|+++|.|- ....+.|+..++. ++.++++|.+|+.++.+.+++++|+ ..+.++.+
T Consensus 85 e~~~~KV~II~~ae~m~------------~~AaNaLLK~LEE----Pp~~t~fiLit~~~~~lLpTI~SRC-q~~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN------------KQSANSLLKLIEE----PPKNTYGIFTTRNENNILNTILSRC-VQYVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhhC------------HHHHHHHHHhhcC----CCCCeEEEEEECChHhCchHhhhhe-eeeecCCh
Confidence 1 134799999999882 2345667766655 4477899999999999999999998 45666555
No 294
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.65 E-value=7.4e-05 Score=91.00 Aligned_cols=172 Identities=27% Similarity=0.353 Sum_probs=104.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecCccc-----cccccchHHHHHHHHHHHhc---------cCCeEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSIT-----SKWFGEGEKYVKAVFSLASK---------IAPSVVF 1048 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL--g~pfi~I~~s~L~-----s~~~GesE~~Ir~lF~~A~k---------~~PsILf 1048 (1183)
-.+||.|.+||||-.|+++|-... ..||+.++|..+- +.+||. +...|.-|+. ...+.+|
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy----~~GafTga~~kG~~g~~~~A~gGtlF 412 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGY----VAGAFTGARRKGYKGKLEQADGGTLF 412 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhcc----CccccccchhccccccceecCCCccH
Confidence 469999999999999999997665 6799999997643 345553 3333433322 2347999
Q ss_pred EeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCC-------CCCcHHHHhccCcEEEecCCCH
Q 001031 1049 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDA 1121 (1183)
Q Consensus 1049 IDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~I~lPd~ 1121 (1183)
+|||..| +-..+..+-+++++-...--|... .+..|.||+||+.. ..+-+.+.-|+ ..+.|.+|..
T Consensus 413 ldeIgd~-----p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL-~~~~i~lP~l 485 (606)
T COG3284 413 LDEIGDM-----PLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRL-NAFVITLPPL 485 (606)
T ss_pred HHHhhhc-----hHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHh-cCeeeccCch
Confidence 9999877 333444555555554333223232 45789999999763 23334444465 4567778876
Q ss_pred HHHH---HHHHHHHhhccCC-ChhhHHHHH----HHcCCCcHHHHHHHHHHHHHH
Q 001031 1122 PNRE---KIIRVILAKEELA-SDVDLEGIA----NMADGYSGSDLKNLCVTAAHC 1168 (1183)
Q Consensus 1122 eeR~---eILk~iL~k~~l~-~didl~~LA----~~TeGySg~DL~~L~~~Aa~~ 1168 (1183)
.+|. .++.+++.+..-. -.++-+.++ ..-.| ..++|.+++..++..
T Consensus 486 r~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l 539 (606)
T COG3284 486 RERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAAL 539 (606)
T ss_pred hcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHc
Confidence 6664 4556666553321 112222222 22233 457888888777654
No 295
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.62 E-value=8.3e-05 Score=82.83 Aligned_cols=136 Identities=22% Similarity=0.280 Sum_probs=80.3
Q ss_pred ceEEEEcCCCChHHHHHHHHH------HHhCCcEEEEecCcccccccc-chHHHHHHHHHHHh--------ccCCeEEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVA------TEAGANFINISMSSITSKWFG-EGEKYVKAVFSLAS--------KIAPSVVFV 1049 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA------~eLg~pfi~I~~s~L~s~~~G-esE~~Ir~lF~~A~--------k~~PsILfI 1049 (1183)
..+||.||.|.||++||+.|. +.+..+|++++|.++.+...- ..-..++..|.-|+ ....++||+
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfl 288 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFL 288 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEeh
Confidence 359999999999999999885 445789999999998654210 00113555555443 234679999
Q ss_pred eCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCC-------CCCCcHHHHhccCcEEEecCCCHH
Q 001031 1050 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-------PFDLDEAVVRRLPRRLMVNLPDAP 1122 (1183)
Q Consensus 1050 DEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~-------p~~Ld~aLlrRFd~vI~I~lPd~e 1122 (1183)
|||..|. ..++.++-+.+.+-...--|-...-...+-+|+-|-+ ...+-+.+.-|+ ..+.+.+|...
T Consensus 289 deigelg-----adeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~ari-nlwtf~lpgl~ 362 (531)
T COG4650 289 DEIGELG-----ADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI-NLWTFTLPGLR 362 (531)
T ss_pred HhhhhcC-----ccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhh-heeeeeccccc
Confidence 9998873 2334444443333211111111111234555655532 123344555566 56788888877
Q ss_pred HHHH
Q 001031 1123 NREK 1126 (1183)
Q Consensus 1123 eR~e 1126 (1183)
+|.+
T Consensus 363 qr~e 366 (531)
T COG4650 363 QRQE 366 (531)
T ss_pred cCcc
Confidence 7654
No 296
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.58 E-value=0.00067 Score=70.71 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=22.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
...|+++|+||+|||+++..|+..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3579999999999999999999877
No 297
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00029 Score=81.67 Aligned_cols=179 Identities=16% Similarity=0.180 Sum_probs=113.8
Q ss_pred eeeecCCCCCCCCCCC----CCC-CCCCcccccccccccCCCcchhHHHHHHHHHHHHhhccCCCCEEEEEcChhhhhcC
Q 001031 645 GVRFDRSIPEGNNLGG----FCE-DDHGFFCTASSLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG 719 (1183)
Q Consensus 645 gV~fd~~~~~~~~l~~----~~~-~~~~~~~~~~~~~~d~~~~~~~~k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~ 719 (1183)
-|.|-.|+.+|+++-+ .-+ -+.. ++...|+. +-+ -+.--.|..||.-... | ..-++||||+.|-+|+.
T Consensus 386 NilfyGPPGTGKTm~ArelAr~SGlDYA-~mTGGDVA---PlG-~qaVTkiH~lFDWakk-S-~rGLllFIDEADAFLce 458 (630)
T KOG0742|consen 386 NILFYGPPGTGKTMFARELARHSGLDYA-IMTGGDVA---PLG-AQAVTKIHKLFDWAKK-S-RRGLLLFIDEADAFLCE 458 (630)
T ss_pred heeeeCCCCCCchHHHHHHHhhcCCcee-hhcCCCcc---ccc-hHHHHHHHHHHHHHhh-c-ccceEEEehhhHHHHHH
Confidence 3689999999999872 111 1111 11222322 111 1122335666666533 1 36799999999999984
Q ss_pred --ChhhHHHHHHHHhcC-------CCCEEEEEeccCCCcccccCCCCCceeeccCcchhhhccccCCCCccccccccccc
Q 001031 720 --NNDAYGALKSKLENL-------PSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKET 790 (1183)
Q Consensus 720 --~~~~~~~i~~~L~~L-------~g~vivIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~ 790 (1183)
.+.+-....+.|++| +..++++-|+| +|-++|+
T Consensus 459 RnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtN------------------------------rpgdlDs-------- 500 (630)
T KOG0742|consen 459 RNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATN------------------------------RPGDLDS-------- 500 (630)
T ss_pred hchhhhcHHHHHHHHHHHHHhcccccceEEEeccC------------------------------CccchhH--------
Confidence 344555678888888 45788888999 6677776
Q ss_pred hHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhhccchhHHHHH------hhhCC-CCcccchhhhcccC
Q 001031 791 PKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNIISIRSV------LSRNG-LDCVDLESLCIKDQ 861 (1183)
Q Consensus 791 ~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il~IHT~------l~~~~-l~~vdL~~LA~~tk 861 (1183)
.++..+...|+.++|..|...+ +..-.-|+..|+..+.- -+.-|-. +.--+ +.+..+.+.|.+|.
T Consensus 501 -----AV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~-~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTe 574 (630)
T KOG0742|consen 501 -----AVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKP-GKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTE 574 (630)
T ss_pred -----HHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCC-chhhHHHhhhhheeeeccchHHHHHHHHHHhcc
Confidence 7788888999999998888655 33334556666655531 1111111 11112 24456788999999
Q ss_pred CCCHHHHHHHHhh
Q 001031 862 TLTTEGVEKIVGW 874 (1183)
Q Consensus 862 gfsgAdIe~Lv~~ 874 (1183)
||+|-||.+|+-.
T Consensus 575 GfSGREiakLva~ 587 (630)
T KOG0742|consen 575 GFSGREIAKLVAS 587 (630)
T ss_pred CCcHHHHHHHHHH
Confidence 9999999999753
No 298
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.52 E-value=0.00058 Score=88.64 Aligned_cols=138 Identities=25% Similarity=0.320 Sum_probs=88.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc------ccccc-ccc--hH-HHHHHHHHHHhccCCeEEEEeCCcc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------ITSKW-FGE--GE-KYVKAVFSLASKIAPSVVFVDEVDS 1054 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~------L~s~~-~Ge--sE-~~Ir~lF~~A~k~~PsILfIDEID~ 1054 (1183)
+++||.|.||+|||.|+.|+|+..|..+++++.++ +++.. .++ .+ .+...-|-.|.+ ...-+++||+..
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDEiNL 1622 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDEINL 1622 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeehhhh
Confidence 46999999999999999999999999999999876 22221 111 11 122334444544 457899999963
Q ss_pred cccCCCCcchHHHHHHHHHHHHHhhcC-----C--cccCCCCEEEEEecCCC------CCCcHHHHhccCcEEEecCCCH
Q 001031 1055 MLGRRENPGEHEAMRKMKNEFMVNWDG-----L--RTKDKERVLVLAATNRP------FDLDEAVVRRLPRRLMVNLPDA 1121 (1183)
Q Consensus 1055 Ll~~r~~~~~~e~l~~il~~LL~~Ldg-----l--~~k~~~~VlVIaTTN~p------~~Ld~aLlrRFd~vI~I~lPd~ 1121 (1183)
- .+..+. -++..+..... + .-..+.+++|.||-|+. ..|+..|+.|| .++.++..+.
T Consensus 1623 a--------SQSVlE-GLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~d~lt~ 1692 (4600)
T COG5271 1623 A--------SQSVLE-GLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKMDGLTT 1692 (4600)
T ss_pred h--------HHHHHH-HHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEeccccc
Confidence 2 122221 12222222111 1 11235788999998874 46999999999 5777777766
Q ss_pred HHHHHHHHHHHh
Q 001031 1122 PNREKIIRVILA 1133 (1183)
Q Consensus 1122 eeR~eILk~iL~ 1133 (1183)
++...|...++.
T Consensus 1693 dDi~~Ia~~~yp 1704 (4600)
T COG5271 1693 DDITHIANKMYP 1704 (4600)
T ss_pred chHHHHHHhhCC
Confidence 666666555443
No 299
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.51 E-value=0.00016 Score=87.17 Aligned_cols=168 Identities=24% Similarity=0.360 Sum_probs=93.5
Q ss_pred hhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH
Q 001031 927 ENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT 1006 (1183)
Q Consensus 927 ~~E~ek~ll~~iIp~~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~ 1006 (1183)
...+..++++.+.| .|.|++.+|..+.-.+.--..+ .-....-.+.-.+|||+|.|||||+.+.+++++
T Consensus 436 d~~i~~rIiaSiaP---------sIyGh~~VK~AvAlaLfGGv~k--n~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK 504 (854)
T KOG0477|consen 436 DPPIKERIIASIAP---------SIYGHEDVKRAVALALFGGVPK--NPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEK 504 (854)
T ss_pred CccHHHHHHHhhCc---------hhhchHHHHHHHHHHHhcCCcc--CCCCCceeccceeEEEecCCCccHHHHHHHHHh
Confidence 44455556666666 6889999999886554321111 000000012224599999999999999999998
Q ss_pred HhCCcEEEEecCc-------------cccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHH
Q 001031 1007 EAGANFINISMSS-------------ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKN 1073 (1183)
Q Consensus 1007 eLg~pfi~I~~s~-------------L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~ 1073 (1183)
.....++.-.... +...|.-+. +++-.| ..+|.+|||+|.|-.++.. ..++++.+ +
T Consensus 505 ~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEa-----GALVLA---DkGvClIDEFDKMndqDRt-SIHEAMEQ--Q 573 (854)
T KOG0477|consen 505 TSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEA-----GALVLA---DKGVCLIDEFDKMNDQDRT-SIHEAMEQ--Q 573 (854)
T ss_pred cCcceeEeccCCccccceeEEEeeCCccceeeecc-----CeEEEc---cCceEEeehhhhhcccccc-hHHHHHHh--c
Confidence 8765554432111 112232111 111122 3489999999999533322 22333321 1
Q ss_pred HHHHhhcCCcccCCCCEEEEEecCCC---C----------CCcHHHHhccCcEEEe
Q 001031 1074 EFMVNWDGLRTKDKERVLVLAATNRP---F----------DLDEAVVRRLPRRLMV 1116 (1183)
Q Consensus 1074 ~LL~~Ldgl~~k~~~~VlVIaTTN~p---~----------~Ld~aLlrRFd~vI~I 1116 (1183)
.+-..--|+...-+.++.||||+|+. . .|.+.+++||+....+
T Consensus 574 SISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVv 629 (854)
T KOG0477|consen 574 SISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVV 629 (854)
T ss_pred chhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeee
Confidence 11111112222234678999999872 1 5667899999854444
No 300
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.51 E-value=0.00017 Score=92.15 Aligned_cols=163 Identities=24% Similarity=0.296 Sum_probs=106.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc-----cc--hHHHHHHHHH---H--HhccCCeEEEEeCCcc
Q 001031 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF-----GE--GEKYVKAVFS---L--ASKIAPSVVFVDEVDS 1054 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~-----Ge--sE~~Ir~lF~---~--A~k~~PsILfIDEID~ 1054 (1183)
+|++||||.|||+.+.++|.++|+.+++++.++..+... +. ....+...|. . .....-.||++||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 699999999999999999999999999999887554432 11 1123333330 0 0111224999999999
Q ss_pred cccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhh
Q 001031 1055 MLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1134 (1183)
Q Consensus 1055 Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k 1134 (1183)
+++ . . +..+.++...... ..+-+|+++|.........+.|....+.|..|+...+...+..++..
T Consensus 440 ~~~-~-d-------Rg~v~~l~~l~~k------s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~s 504 (871)
T KOG1968|consen 440 MFG-E-D-------RGGVSKLSSLCKK------SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKS 504 (871)
T ss_pred ccc-h-h-------hhhHHHHHHHHHh------ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcc
Confidence 864 1 1 1122222222221 33466777887766665555554456999999999988888887766
Q ss_pred ccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001031 1135 EELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHC 1168 (1183)
Q Consensus 1135 ~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~~ 1168 (1183)
+.+. .+..++.+.+.+ ++||++.+..-.+.
T Consensus 505 e~~ki~~~~l~~~s~~~----~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 505 EGIKISDDVLEEISKLS----GGDIRQIIMQLQFW 535 (871)
T ss_pred cceecCcHHHHHHHHhc----ccCHHHHHHHHhhh
Confidence 5443 555677777766 66777776655544
No 301
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.48 E-value=0.0015 Score=87.34 Aligned_cols=173 Identities=16% Similarity=0.232 Sum_probs=95.6
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcE---EEEecCc---
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANF---INISMSS--- 1019 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pf---i~I~~s~--- 1019 (1183)
..+++++|.+...++|...+... ....+-|-|+|++|+|||+||+++++.+...| +.++...
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~------------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLE------------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cccccccchHHHHHHHHHHHccc------------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 35778999999999998876421 11235689999999999999999988874332 1121100
Q ss_pred ---cccc-----c---ccchHHHHHH-------------HHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHH
Q 001031 1020 ---ITSK-----W---FGEGEKYVKA-------------VFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEF 1075 (1183)
Q Consensus 1020 ---L~s~-----~---~GesE~~Ir~-------------lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~L 1075 (1183)
.... + ..-....+.. .....-+.++.+|+||+++.. ..+..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--------------~~l~~L 314 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--------------DVLDAL 314 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--------------HHHHHH
Confidence 0000 0 0000001111 111122345679999999742 122222
Q ss_pred HHhhcCCcccCCCCEEEEEecCCCCCCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhh----HHHHHHH
Q 001031 1076 MVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVD----LEGIANM 1149 (1183)
Q Consensus 1076 L~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~did----l~~LA~~ 1149 (1183)
....+.+ ...-.||.||... .+++ ..+.++.+..|+.++..++|..+.-+..... .+ ..+++++
T Consensus 315 ~~~~~~~----~~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~~iv~~ 384 (1153)
T PLN03210 315 AGQTQWF----GSGSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELASEVALR 384 (1153)
T ss_pred HhhCccC----CCCcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHH
Confidence 2222211 1234566677653 2332 3567899999999999999887654322222 22 3445666
Q ss_pred cCCCc
Q 001031 1150 ADGYS 1154 (1183)
Q Consensus 1150 TeGyS 1154 (1183)
+.|..
T Consensus 385 c~GLP 389 (1153)
T PLN03210 385 AGNLP 389 (1153)
T ss_pred hCCCc
Confidence 66644
No 302
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.39 E-value=0.0011 Score=78.01 Aligned_cols=102 Identities=20% Similarity=0.306 Sum_probs=56.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCC-cEEEEecCccccccccch------HHHHHHHHHHHhccCCeEEEEeCCc
Q 001031 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGA-NFINISMSSITSKWFGEG------EKYVKAVFSLASKIAPSVVFVDEVD 1053 (1183)
Q Consensus 981 ~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-pfi~I~~s~L~s~~~Ges------E~~Ir~lF~~A~k~~PsILfIDEID 1053 (1183)
..+++||.|||++|+|||+|.-.+...+.. .-..+....++....... ..-+..+-....+ .-.||+|||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeee
Confidence 346799999999999999999999887744 111111112111110000 0111122111111 22499999997
Q ss_pred ccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCC
Q 001031 1054 SMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1183)
Q Consensus 1054 ~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~ 1098 (1183)
.- +..+...+.+++..+.. ..+++|+|+|.
T Consensus 138 V~-----DiaDAmil~rLf~~l~~----------~gvvlVaTSN~ 167 (362)
T PF03969_consen 138 VT-----DIADAMILKRLFEALFK----------RGVVLVATSNR 167 (362)
T ss_pred cc-----chhHHHHHHHHHHHHHH----------CCCEEEecCCC
Confidence 43 33344444555554431 56899999986
No 303
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=97.39 E-value=0.0006 Score=83.54 Aligned_cols=88 Identities=30% Similarity=0.376 Sum_probs=74.7
Q ss_pred cceeEEccCCccceeecCCCCCccceEEEEeecCCc--------ceEEEEEecCC-ceEEEcCeecCCCceEEeeCCCEE
Q 001031 151 GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGP--------SGALLEITGGK-GEVEVNGNVHPKDSQVVLRGGDEL 221 (1183)
Q Consensus 151 ~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~--------~~a~le~~~~~-G~v~vNg~~~~k~~~~~L~~gDev 221 (1183)
...|+|||-..||+.+-+|+||..||.|.+. +.|. ...++-+.|+- || |+|.+++.+.+-+.++-|+.+
T Consensus 176 ~~~~~fgr~~~cD~~~eHpsISr~h~vlQy~-~~~~~~p~~s~~~g~~i~dlgsThgt-~~NK~rvppk~yir~~Vg~v~ 253 (793)
T KOG1881|consen 176 AAACLFGRLGGCDVALEHPSISRFHAVLQYK-ASGPDDPCASNGEGWYIYDLGSTHGT-FLNKDRVPPKVYIRDRVGHVA 253 (793)
T ss_pred ceeEEecccCCCccccccCcccccceeeecc-CCCCCccccCCCCceEEeeccccccc-eeccccCCCcchhhhhHHHHH
Confidence 4789999999999999999999999998865 2332 24566666655 99 799999999999999999999
Q ss_pred EEccCCCeeEEeeecCcccC
Q 001031 222 VFSPSGKHSYIFQQLSDDTL 241 (1183)
Q Consensus 222 ~f~~~~~~ayifq~l~~~~~ 241 (1183)
-|+-+.+ .||||+.-.+..
T Consensus 254 ~fggsTr-l~i~Qgp~eD~E 272 (793)
T KOG1881|consen 254 RFGGSTR-LYIFQGPEEDEE 272 (793)
T ss_pred HhcCceE-EEEeeCCCcCCC
Confidence 9998887 999999876665
No 304
>PHA00729 NTP-binding motif containing protein
Probab=97.37 E-value=0.00033 Score=77.06 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=24.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANF 1012 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pf 1012 (1183)
..|+|+|+||||||+||.+|++.++..+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~~l 45 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFWKL 45 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 4799999999999999999999986433
No 305
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.36 E-value=0.003 Score=71.51 Aligned_cols=130 Identities=16% Similarity=0.227 Sum_probs=72.6
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEE-----ecCc
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINI-----SMSS 1019 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-----g~pfi~I-----~~s~ 1019 (1183)
.+.|+.-+++.+...+.-.+..+ . .+.|--+=|+|++||||.++++.||+.+ .-+++.. +++.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~------~-p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~ 155 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANP------N-PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPH 155 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCC------C-CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCC
Confidence 36788777777777766433322 1 2233457799999999999999999886 2333321 1111
Q ss_pred --cccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecC
Q 001031 1020 --ITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1097 (1183)
Q Consensus 1020 --L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN 1097 (1183)
-...|- ++.-..+-.-+...+.+|+++||+|.| .+ .+-..+.-|+............+-++|.-+|
T Consensus 156 ~~~ie~Yk---~eL~~~v~~~v~~C~rslFIFDE~DKm-----p~----gLld~lkpfLdyyp~v~gv~frkaIFIfLSN 223 (344)
T KOG2170|consen 156 ASKIEDYK---EELKNRVRGTVQACQRSLFIFDEVDKL-----PP----GLLDVLKPFLDYYPQVSGVDFRKAIFIFLSN 223 (344)
T ss_pred hHHHHHHH---HHHHHHHHHHHHhcCCceEEechhhhc-----CH----hHHHHHhhhhccccccccccccceEEEEEcC
Confidence 111111 222333344445666799999999988 21 1222333344322222222345667777665
Q ss_pred C
Q 001031 1098 R 1098 (1183)
Q Consensus 1098 ~ 1098 (1183)
.
T Consensus 224 ~ 224 (344)
T KOG2170|consen 224 A 224 (344)
T ss_pred C
Confidence 4
No 306
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.34 E-value=0.0011 Score=69.26 Aligned_cols=70 Identities=24% Similarity=0.369 Sum_probs=45.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc------cccc-----------------------hH-----
Q 001031 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFGE-----------------------GE----- 1029 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~------~~Ge-----------------------sE----- 1029 (1183)
+||+||||||||+|+..++.+. |.+++.++..+-... .+|. .+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7999999999999999887654 666666654321100 0000 00
Q ss_pred HHHHHHHHHHhccCCeEEEEeCCcccc
Q 001031 1030 KYVKAVFSLASKIAPSVVFVDEVDSML 1056 (1183)
Q Consensus 1030 ~~Ir~lF~~A~k~~PsILfIDEID~Ll 1056 (1183)
..+..+...+....|.+|+||++..+.
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~ 108 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLL 108 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHh
Confidence 112444555566789999999998775
No 307
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.31 E-value=0.0013 Score=75.21 Aligned_cols=161 Identities=19% Similarity=0.343 Sum_probs=93.7
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH---HhCCcEEEEecCcc--c---
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT---EAGANFINISMSSI--T--- 1021 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~---eLg~pfi~I~~s~L--~--- 1021 (1183)
.+.|..+..+.+.+++..... ..-...|++.||.|+|||+|...... +.|-+|+.+...-. .
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~----------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL----------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH----------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 466777777777777653221 22346899999999999997765543 45666666543221 1
Q ss_pred ----------------cccccchHHHHHHHHHHHhc---cC--CeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhc
Q 001031 1022 ----------------SKWFGEGEKYVKAVFSLASK---IA--PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD 1080 (1183)
Q Consensus 1022 ----------------s~~~GesE~~Ir~lF~~A~k---~~--PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ld 1080 (1183)
...+|.....+..+...... +. +.|.++||||...+.. .+++++.+-
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~------------rQtllYnlf 162 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS------------RQTLLYNLF 162 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch------------hhHHHHHHH
Confidence 11233333333333333322 11 2344558999775321 123333332
Q ss_pred CCcccCCCCEEEEEecCCCC---CCcHHHHhccCcE-EEe-cCCCHHHHHHHHHHHH
Q 001031 1081 GLRTKDKERVLVLAATNRPF---DLDEAVVRRLPRR-LMV-NLPDAPNREKIIRVIL 1132 (1183)
Q Consensus 1081 gl~~k~~~~VlVIaTTN~p~---~Ld~aLlrRFd~v-I~I-~lPd~eeR~eILk~iL 1132 (1183)
.+......++.||+.|.+.+ .|...+.+||..+ |.+ +.....+-..+++..+
T Consensus 163 Disqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 163 DISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 23333457899999887765 4556788899765 444 3345777778888777
No 308
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.31 E-value=0.0061 Score=67.91 Aligned_cols=175 Identities=19% Similarity=0.214 Sum_probs=103.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCccc-----cccc----c--------chHHHHHHHHHHHhc-cCC
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSIT-----SKWF----G--------EGEKYVKAVFSLASK-IAP 1044 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg---~pfi~I~~s~L~-----s~~~----G--------esE~~Ir~lF~~A~k-~~P 1044 (1183)
-+.++|+-|+|||++.++++..++ .-.+.++...+. ..++ . ..++.-+.+.....+ ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 489999999999999997776663 222344433211 1111 1 112222333333333 346
Q ss_pred eEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCc----HHHHhccCcEEEecCCC
Q 001031 1045 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD----EAVVRRLPRRLMVNLPD 1120 (1183)
Q Consensus 1045 sILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld----~aLlrRFd~vI~I~lPd 1120 (1183)
-++++||.+.+. ...-+.++.+.+ .-... ...-.+++|+=..-...+- ..+..|++.+|.+++.+
T Consensus 133 v~l~vdEah~L~-----~~~le~Lrll~n----l~~~~--~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 133 VVLMVDEAHDLN-----DSALEALRLLTN----LEEDS--SKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred eEEeehhHhhhC-----hhHHHHHHHHHh----hcccc--cCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 899999999882 223333333222 11111 1113355555332111111 24445887668888888
Q ss_pred HHHHHHHHHHHHhhc----cCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHH
Q 001031 1121 APNREKIIRVILAKE----ELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIRE 1172 (1183)
Q Consensus 1121 ~eeR~eILk~iL~k~----~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire 1172 (1183)
.++-..++++.++.- .+.++..+..+...++| .+.-|.++|..|...+...
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a 256 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSA 256 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHc
Confidence 888889999988763 44566678888999998 5678888888877666543
No 309
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.29 E-value=0.0011 Score=71.29 Aligned_cols=74 Identities=23% Similarity=0.419 Sum_probs=49.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccc-----------------------cchHHHHHHHHH
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF-----------------------GEGEKYVKAVFS 1037 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~~-----------------------GesE~~Ir~lF~ 1037 (1183)
..-++|+||||+|||+++..++... +...+.++...+....+ .+....+..+..
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~ 91 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTSK 91 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHHH
Confidence 3458999999999999999987654 66788887754111000 011122444444
Q ss_pred HHhccCCeEEEEeCCccccc
Q 001031 1038 LASKIAPSVVFVDEVDSMLG 1057 (1183)
Q Consensus 1038 ~A~k~~PsILfIDEID~Ll~ 1057 (1183)
.+.+..+.+|+||-|..++.
T Consensus 92 ~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 92 FIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHhhcCccEEEEeCcHHHhH
Confidence 55566789999999998763
No 310
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.28 E-value=0.0003 Score=68.36 Aligned_cols=23 Identities=48% Similarity=0.879 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHhC
Q 001031 987 ILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
|.|+||||+|||+||+.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998874
No 311
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.24 E-value=0.0021 Score=76.51 Aligned_cols=176 Identities=23% Similarity=0.285 Sum_probs=96.5
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe----cCccccccc
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS----MSSITSKWF 1025 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~----~s~L~s~~~ 1025 (1183)
.|.|.+++|+.+.-++.- .....+-.+--.+..-+|||.|.|||.|+.|.+-+-+-...-++.-. .+-|.....
T Consensus 332 SIfG~~DiKkAiaClLFg--GsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~ 409 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFG--GSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVI 409 (729)
T ss_pred hhcCchhHHHHHHHHhhc--CccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEE
Confidence 578999999998655431 11111111211233356999999999999999998776544443321 011111100
Q ss_pred cchHHHHHHHHH--HH-hccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC--
Q 001031 1026 GEGEKYVKAVFS--LA-SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF-- 1100 (1183)
Q Consensus 1026 GesE~~Ir~lF~--~A-~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~-- 1100 (1183)
..+. -+.++- -| --...+|+.|||+|.|-..+. -.-++++.+ +++-..--|+.+.-+.+.-|+|++|+..
T Consensus 410 RD~~--tReFylEGGAMVLADgGVvCIDEFDKMre~DR-VAIHEAMEQ--QTISIAKAGITT~LNSRtSVLAAANpvfGR 484 (729)
T KOG0481|consen 410 RDPS--TREFYLEGGAMVLADGGVVCIDEFDKMREDDR-VAIHEAMEQ--QTISIAKAGITTTLNSRTSVLAAANPVFGR 484 (729)
T ss_pred ecCC--cceEEEecceEEEecCCEEEeehhhccCchhh-hHHHHHHHh--hhHHHhhhcceeeecchhhhhhhcCCcccc
Confidence 0000 000000 00 012458999999999831111 122333322 2233334566666678889999999742
Q ss_pred -----------CCcHHHHhccCcEEEecCCCHHHH-HHHHHHHH
Q 001031 1101 -----------DLDEAVVRRLPRRLMVNLPDAPNR-EKIIRVIL 1132 (1183)
Q Consensus 1101 -----------~Ld~aLlrRFd~vI~I~lPd~eeR-~eILk~iL 1132 (1183)
++.+.+++||+.++.+.---.++| ..|.++.+
T Consensus 485 yDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI 528 (729)
T KOG0481|consen 485 YDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVI 528 (729)
T ss_pred ccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhh
Confidence 244799999999888865433333 44444444
No 312
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.23 E-value=0.0008 Score=73.93 Aligned_cols=75 Identities=17% Similarity=0.256 Sum_probs=42.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc--cccc--------cccchHHHHHHHHHHHh--ccCCeEEE
Q 001031 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS--ITSK--------WFGEGEKYVKAVFSLAS--KIAPSVVF 1048 (1183)
Q Consensus 981 ~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~--L~s~--------~~GesE~~Ir~lF~~A~--k~~PsILf 1048 (1183)
.+.+..+||||+||+|||++|+.++. ..-++..+... +.+. .....-..+.+.+..+. .....+|+
T Consensus 9 ~~~~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVV 86 (220)
T TIGR01618 9 KRIPNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIV 86 (220)
T ss_pred CCCCcEEEEECCCCCCHHHHHHhcCC--CCEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEE
Confidence 34346699999999999999999863 12233333321 1100 00111122333333332 23457999
Q ss_pred EeCCccccc
Q 001031 1049 VDEVDSMLG 1057 (1183)
Q Consensus 1049 IDEID~Ll~ 1057 (1183)
||+|+.|..
T Consensus 87 IDsI~~l~~ 95 (220)
T TIGR01618 87 IDNISALQN 95 (220)
T ss_pred EecHHHHHH
Confidence 999998753
No 313
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.23 E-value=0.0043 Score=79.77 Aligned_cols=33 Identities=27% Similarity=0.545 Sum_probs=29.6
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001031 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1183)
Q Consensus 493 ~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs 527 (1183)
+.+||.||+| .-..+|||+||+.++.++.-++.
T Consensus 348 ~~lll~GppG--~GKT~lAk~iA~~l~~~~~~i~~ 380 (775)
T TIGR00763 348 PILCLVGPPG--VGKTSLGKSIAKALNRKFVRFSL 380 (775)
T ss_pred ceEEEECCCC--CCHHHHHHHHHHHhcCCeEEEeC
Confidence 4699999999 78899999999999999887774
No 314
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.15 E-value=0.00039 Score=67.75 Aligned_cols=31 Identities=42% Similarity=0.739 Sum_probs=28.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001031 987 ILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~ 1017 (1183)
|+|.|+||+||||+|+.+|..+|++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999998877653
No 315
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.14 E-value=0.0014 Score=78.88 Aligned_cols=172 Identities=24% Similarity=0.298 Sum_probs=102.8
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEE---------EecCcc
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFIN---------ISMSSI 1020 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~---------I~~s~L 1020 (1183)
.|.|++.+|+.|.-++.--. ...+.++.-.+.--+|||.|.|-+.|+.|.+++.+.....+-. +..+-.
T Consensus 302 SI~GH~~vKkAillLLlGGv--Ek~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGV--EKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhccc--eeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 57899999999865543211 1122233334444569999999999999999998766332211 111111
Q ss_pred ccccccchHHHHH-HHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhh--cCCcccCCCCEEEEEecC
Q 001031 1021 TSKWFGEGEKYVK-AVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATN 1097 (1183)
Q Consensus 1021 ~s~~~GesE~~Ir-~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~L--dgl~~k~~~~VlVIaTTN 1097 (1183)
...- ..|+.+. +..-.| ..+|++|||+|.| +.....+.-.++.+-...+ -|+...-+.++-|||++|
T Consensus 380 tD~e--TGERRLEAGAMVLA---DRGVVCIDEFDKM-----sDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAAN 449 (818)
T KOG0479|consen 380 TDQE--TGERRLEAGAMVLA---DRGVVCIDEFDKM-----SDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAAN 449 (818)
T ss_pred eccc--cchhhhhcCceEEc---cCceEEehhcccc-----cchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecC
Confidence 1111 1222221 111223 3489999999998 3344444445555443333 366666678999999999
Q ss_pred CCC-------------CCcHHHHhccCcEEEe-cCCCHHHHHHHHHHHHh
Q 001031 1098 RPF-------------DLDEAVVRRLPRRLMV-NLPDAPNREKIIRVILA 1133 (1183)
Q Consensus 1098 ~p~-------------~Ld~aLlrRFd~vI~I-~lPd~eeR~eILk~iL~ 1133 (1183)
+.+ -|++.+++||+..+.+ +.-+...-..|-.+.+.
T Consensus 450 PvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLR 499 (818)
T KOG0479|consen 450 PVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLR 499 (818)
T ss_pred ccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHH
Confidence 743 4778999999865544 44555555555555553
No 316
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.13 E-value=0.00071 Score=72.47 Aligned_cols=123 Identities=15% Similarity=0.201 Sum_probs=58.3
Q ss_pred EEEEcCCCChHHHHHHHH-HHHh---CCcEEEEecCccccccccc----hHH-------------HHHHHHHHHhccCCe
Q 001031 987 ILLFGPPGTGKTMLAKAV-ATEA---GANFINISMSSITSKWFGE----GEK-------------YVKAVFSLASKIAPS 1045 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAI-A~eL---g~pfi~I~~s~L~s~~~Ge----sE~-------------~Ir~lF~~A~k~~Ps 1045 (1183)
.|++|.||+|||+.|-.. .... |.+++. +...|.-..+.. .-. ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 589999999999977655 4333 666555 433222111111 000 001111111111568
Q ss_pred EEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCC
Q 001031 1046 VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLP 1119 (1183)
Q Consensus 1046 ILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lP 1119 (1183)
||+|||+..+++.+..... .....+ +++.. -.+..+-||.+|..+..|+..+++..+..+.+..+
T Consensus 82 liviDEa~~~~~~r~~~~~--~~~~~~-~~l~~------hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGK--KVPEII-EFLAQ------HRHYGWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-T------HHH-HGGGG------CCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred EEEEECChhhcCCCccccc--cchHHH-HHHHH------hCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 9999999999977654210 111222 22222 23466888999999999999998877666665543
No 317
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=97.08 E-value=0.00065 Score=79.31 Aligned_cols=75 Identities=29% Similarity=0.446 Sum_probs=64.0
Q ss_pred ecceeEEccCCccceeecCCCC--CccceEEEEeecCCcceEEEEEecCCceEEEcCeecCCCce-EEeeCCCEEEEccC
Q 001031 150 TGAVFTVGHNRQCDLYLKDPSI--SKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQ-VVLRGGDELVFSPS 226 (1183)
Q Consensus 150 ~~~~~t~G~~~~cd~~l~d~~~--s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vNg~~~~k~~~-~~L~~gDev~f~~~ 226 (1183)
.....+|||+..||-.+.|+.- |+-||+|... +|. ++|=++|+||+ +|||..+.-|.- +.|+.||||-++
T Consensus 24 ~~~~g~IGrs~dcdW~i~D~~~~VS~~Hc~I~~~--dg~--f~L~DtS~g~l-~VNgs~~~~g~~~~RLqqGd~i~iG-- 96 (430)
T COG3456 24 DRGGGVIGRSPDCDWQIDDPERFVSKQHCTISYR--DGG--FCLTDTSNGGL-LVNGSDLPLGEGSARLQQGDEILIG-- 96 (430)
T ss_pred hcCCcccccCCCCCccccCcccccchhheEEEec--CCe--EEEEecCCCce-eecccccCCCCCccccccCCEEeec--
Confidence 3467899999999999999875 9999999864 555 78999998888 799999999888 999999999773
Q ss_pred CCeeEEee
Q 001031 227 GKHSYIFQ 234 (1183)
Q Consensus 227 ~~~ayifq 234 (1183)
-|||.
T Consensus 97 ---~y~i~ 101 (430)
T COG3456 97 ---RYIIR 101 (430)
T ss_pred ---cEEEE
Confidence 37776
No 318
>PF14516 AAA_35: AAA-like domain
Probab=97.06 E-value=0.011 Score=68.85 Aligned_cols=163 Identities=14% Similarity=0.152 Sum_probs=85.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccc-------------------------------h
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGE-------------------------------G 1028 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~~Ge-------------------------------s 1028 (1183)
|..-+.|+||..+|||+|...+.+.+ |...+.+++..+....+.. .
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 44579999999999999998887665 7788888876532211110 0
Q ss_pred HHHHHHHHHH---HhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCC-cccCCCCEEEEEecCCCCCCcH
Q 001031 1029 EKYVKAVFSL---ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-RTKDKERVLVLAATNRPFDLDE 1104 (1183)
Q Consensus 1029 E~~Ir~lF~~---A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl-~~k~~~~VlVIaTTN~p~~Ld~ 1104 (1183)
.......|.. .....|-||+|||||.++.... ....++..+......- ......++.+|.+......+..
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~ 183 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ------IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIIL 183 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc------hHHHHHHHHHHHHHhcccCcccceEEEEEecCccccccc
Confidence 1122223332 1224678999999999963221 1112222211111110 0111233444443322111111
Q ss_pred HH-Hh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCc
Q 001031 1105 AV-VR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYS 1154 (1183)
Q Consensus 1105 aL-lr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGyS 1154 (1183)
.. .+ .+...+.++.-+.++-..+++.+-.. .....++.|-..+.|..
T Consensus 184 ~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 184 DINQSPFNIGQPIELPDFTPEEVQELAQRYGLE---FSQEQLEQLMDWTGGHP 233 (331)
T ss_pred CCCCCCcccccceeCCCCCHHHHHHHHHhhhcc---CCHHHHHHHHHHHCCCH
Confidence 11 11 23345666666788888877766322 23334888888888854
No 319
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.00 E-value=0.0034 Score=75.88 Aligned_cols=97 Identities=26% Similarity=0.417 Sum_probs=61.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc------cc--------chHHHHHHHHHHHhccCCe
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW------FG--------EGEKYVKAVFSLASKIAPS 1045 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~------~G--------esE~~Ir~lF~~A~k~~Ps 1045 (1183)
+..-+||+|+||+|||+|+..++... +..+++++..+-.... +| ..+..+..++.......|.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~ 158 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPD 158 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCC
Confidence 33568999999999999999998765 6777887764422111 11 0112345566666777899
Q ss_pred EEEEeCCcccccCCCC--cchHHHHHHHHHHHHHhh
Q 001031 1046 VVFVDEVDSMLGRREN--PGEHEAMRKMKNEFMVNW 1079 (1183)
Q Consensus 1046 ILfIDEID~Ll~~r~~--~~~~e~l~~il~~LL~~L 1079 (1183)
+|+||+|..+...... ++.....+.++..|....
T Consensus 159 lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~a 194 (446)
T PRK11823 159 LVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLA 194 (446)
T ss_pred EEEEechhhhccccccCCCCCHHHHHHHHHHHHHHH
Confidence 9999999988643211 223333444555554443
No 320
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.00 E-value=0.0032 Score=74.31 Aligned_cols=97 Identities=24% Similarity=0.412 Sum_probs=60.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc------ccc--------chHHHHHHHHHHHhccCCe
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG--------EGEKYVKAVFSLASKIAPS 1045 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~------~~G--------esE~~Ir~lF~~A~k~~Ps 1045 (1183)
+..-+||+|+||+|||+|+..+|..+ +.++++++..+-... .++ ..+..+..++..+....|.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~ 160 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPD 160 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCc
Confidence 33568999999999999999998765 457777765431111 011 0122355666666777899
Q ss_pred EEEEeCCcccccCCC--CcchHHHHHHHHHHHHHhh
Q 001031 1046 VVFVDEVDSMLGRRE--NPGEHEAMRKMKNEFMVNW 1079 (1183)
Q Consensus 1046 ILfIDEID~Ll~~r~--~~~~~e~l~~il~~LL~~L 1079 (1183)
+|+||+|..++.... .++.....+.++..|....
T Consensus 161 lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~la 196 (372)
T cd01121 161 LVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFA 196 (372)
T ss_pred EEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHH
Confidence 999999998864332 1223333445555554443
No 321
>PRK08118 topology modulation protein; Reviewed
Probab=97.00 E-value=0.0015 Score=68.57 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=30.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~ 1017 (1183)
..|+|.||||+|||+||+.|++.++.+++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 369999999999999999999999999988873
No 322
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0057 Score=78.32 Aligned_cols=139 Identities=22% Similarity=0.336 Sum_probs=96.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCcccc--ccccchHHHHHHHHHHHhcc-CCeEEEEeC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSITS--KWFGEGEKYVKAVFSLASKI-APSVVFVDE 1051 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL----------g~pfi~I~~s~L~s--~~~GesE~~Ir~lF~~A~k~-~PsILfIDE 1051 (1183)
++-+|.|.||+|||.++.-+|+.. +..++.++...+.. ++-|+.+..++.+...+... ...||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 567999999999999999999876 34566666654443 35577888999999988843 567899999
Q ss_pred CcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCC-----CCCCcHHHHhccCcEEEecCCCHHHHHH
Q 001031 1052 VDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-----PFDLDEAVVRRLPRRLMVNLPDAPNREK 1126 (1183)
Q Consensus 1052 ID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~-----p~~Ld~aLlrRFd~vI~I~lPd~eeR~e 1126 (1183)
++.+.+...+.+ .-...+.|.-.+. ...+.+|+||.. .-.=++++-+|| ..+.++.|+.++-..
T Consensus 289 lh~lvg~g~~~~----~~d~~nlLkp~L~------rg~l~~IGatT~e~Y~k~iekdPalErrw-~l~~v~~pS~~~~~~ 357 (898)
T KOG1051|consen 289 LHWLVGSGSNYG----AIDAANLLKPLLA------RGGLWCIGATTLETYRKCIEKDPALERRW-QLVLVPIPSVENLSL 357 (898)
T ss_pred eeeeecCCCcch----HHHHHHhhHHHHh------cCCeEEEecccHHHHHHHHhhCcchhhCc-ceeEeccCcccchhh
Confidence 998876554422 1122222222221 134889988752 234578899999 467789999887666
Q ss_pred HHHHHHhh
Q 001031 1127 IIRVILAK 1134 (1183)
Q Consensus 1127 ILk~iL~k 1134 (1183)
|+...-..
T Consensus 358 iL~~l~~~ 365 (898)
T KOG1051|consen 358 ILPGLSER 365 (898)
T ss_pred hhhhhhhh
Confidence 77766554
No 323
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.92 E-value=0.019 Score=74.54 Aligned_cols=152 Identities=16% Similarity=0.222 Sum_probs=82.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc---c-------c-----c---------------chHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK---W-------F-----G---------------EGEKYVKA 1034 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~---~-------~-----G---------------esE~~Ir~ 1034 (1183)
+-++|+||+|.|||+++...++..+ ++..+++..-.+. + + + .....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 4589999999999999999887776 6655554211000 0 0 0 00112233
Q ss_pred HHHHHhc-cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcE
Q 001031 1035 VFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRR 1113 (1183)
Q Consensus 1035 lF~~A~k-~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~v 1113 (1183)
++..... ..|.+|+|||++.+- + ......+..++.. . +.++.+|.++...-.+.-.-++.-+..
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~----~----~~~~~~l~~l~~~---~----~~~~~lv~~sR~~~~~~~~~l~~~~~~ 176 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT----N----PEIHEAMRFFLRH---Q----PENLTLVVLSRNLPPLGIANLRVRDQL 176 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC----C----hHHHHHHHHHHHh---C----CCCeEEEEEeCCCCCCchHhHHhcCcc
Confidence 3333332 578999999999761 1 1122233333322 2 133444445644222322111111223
Q ss_pred EEec----CCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCc
Q 001031 1114 LMVN----LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYS 1154 (1183)
Q Consensus 1114 I~I~----lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGyS 1154 (1183)
+.+. ..+.++-.+++...+... .+..++..|...|+|..
T Consensus 177 ~~l~~~~l~f~~~e~~~ll~~~~~~~--~~~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 177 LEIGSQQLAFDHQEAQQFFDQRLSSP--IEAAESSRLCDDVEGWA 219 (903)
T ss_pred eecCHHhCCCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhCChH
Confidence 4555 557788888877654321 25566788888888754
No 324
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.89 E-value=0.0085 Score=71.45 Aligned_cols=121 Identities=19% Similarity=0.231 Sum_probs=70.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchH
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH 1065 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~ 1065 (1183)
-++|+||.++|||++++.+.....-.++.++..++......- ......+..++......||||||+.+ ++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v------~~-- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV------PD-- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc------hh--
Confidence 799999999999999988888875556666655544332221 12222333333335579999999876 11
Q ss_pred HHHHHHHHHHHHhhcCCcccCCCCEEEEEecCC--CCCCcHHHHhccCcEEEecCCCHHHHHH
Q 001031 1066 EAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR--PFDLDEAVVRRLPRRLMVNLPDAPNREK 1126 (1183)
Q Consensus 1066 e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~--p~~Ld~aLlrRFd~vI~I~lPd~eeR~e 1126 (1183)
+...+-...+... .++++.+++.. ...+.+.+..|. ..+.+.+.+..+...
T Consensus 109 -----W~~~lk~l~d~~~----~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 109 -----WERALKYLYDRGN----LDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred -----HHHHHHHHHcccc----ceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 2222222233211 13444444422 233445566685 677788888888754
No 325
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.88 E-value=0.0025 Score=66.07 Aligned_cols=59 Identities=25% Similarity=0.358 Sum_probs=36.4
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecCcc
Q 001031 951 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSI 1020 (1183)
Q Consensus 951 I~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p---fi~I~~s~L 1020 (1183)
++|.++..+.|...+.. .. ...++.++|+|++|+|||+|++++...+... ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~~----------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-AQ----------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-TS----------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-HH----------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 46788888888776631 11 2234689999999999999999988776322 777666554
No 326
>PRK07261 topology modulation protein; Provisional
Probab=96.88 E-value=0.0023 Score=67.36 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=29.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~ 1017 (1183)
.|+|.|+||+|||+||+.|+..++.+++.++.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 58999999999999999999999999888764
No 327
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.87 E-value=0.0014 Score=80.14 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=47.8
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEec
Q 001031 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISM 1017 (1183)
Q Consensus 947 tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-g~pfi~I~~ 1017 (1183)
-|+|+.|++++++.+.+++..... ++.....-++|.||||+|||+||+.||+.+ .++++.+..
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~--------gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ--------GLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH--------hcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 478999999999999888743211 112233469999999999999999999988 567776644
No 328
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.84 E-value=0.0078 Score=69.71 Aligned_cols=75 Identities=25% Similarity=0.329 Sum_probs=50.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc----------------ccccchHHHHHHHHHHHhccCC
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKIAP 1044 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s----------------~~~GesE~~Ir~lF~~A~k~~P 1044 (1183)
..-++|+||||+|||+||..++... +..++.++...... ......++.+..+....+...+
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~ 134 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAV 134 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCC
Confidence 3458999999999999988776554 66777776533111 1112334455555555566788
Q ss_pred eEEEEeCCcccccC
Q 001031 1045 SVVFVDEVDSMLGR 1058 (1183)
Q Consensus 1045 sILfIDEID~Ll~~ 1058 (1183)
.+|+||-|-.|.+.
T Consensus 135 ~lIVIDSv~al~~~ 148 (321)
T TIGR02012 135 DIIVVDSVAALVPK 148 (321)
T ss_pred cEEEEcchhhhccc
Confidence 99999999988753
No 329
>PHA02624 large T antigen; Provisional
Probab=96.83 E-value=0.0043 Score=76.43 Aligned_cols=119 Identities=20% Similarity=0.273 Sum_probs=67.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCccccc-CCCCcc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLG-RRENPG 1063 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~-~r~~~~ 1063 (1183)
+.+||+||||||||+++.+|++.++...+.++++.-.+. |...--....+.+||++-.-.- ...-+.
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~ 499 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNKDLPS 499 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeeccccccccccCCc
Confidence 469999999999999999999999777777876652221 1111111225788888842211 000000
Q ss_pred hHHHHHHHHHHHHHhhcCC-cc------cCCCCE---EEEEecCCCCCCcHHHHhccCcEEEecC
Q 001031 1064 EHEAMRKMKNEFMVNWDGL-RT------KDKERV---LVLAATNRPFDLDEAVVRRLPRRLMVNL 1118 (1183)
Q Consensus 1064 ~~e~l~~il~~LL~~Ldgl-~~------k~~~~V---lVIaTTN~p~~Ld~aLlrRFd~vI~I~l 1118 (1183)
++-+ . =+..+...+||- .- +.+..+ -+|.|||. ..|+.++.-||..++.|..
T Consensus 500 G~~~-d-Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 500 GQGM-N-NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred cccc-c-hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 0000 0 012344455654 10 011111 14556665 6788889899988888753
No 330
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.83 E-value=0.0047 Score=67.23 Aligned_cols=36 Identities=36% Similarity=0.588 Sum_probs=29.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s 1018 (1183)
+..-++|+|+||+|||+++..+|... +..++.++..
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 33458999999999999999998754 6778888766
No 331
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.82 E-value=0.00072 Score=71.26 Aligned_cols=23 Identities=52% Similarity=0.808 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001031 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
+|+|+|+||+|||||++.++..+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999998887
No 332
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.81 E-value=0.0012 Score=67.92 Aligned_cols=34 Identities=29% Similarity=0.533 Sum_probs=30.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
++..|+|+|+||+|||++|+++|..++++++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 3468999999999999999999999999888654
No 333
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.77 E-value=0.0051 Score=69.39 Aligned_cols=93 Identities=18% Similarity=0.291 Sum_probs=60.6
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec-Cccc
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISM-SSIT 1021 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg---~pfi~I~~-s~L~ 1021 (1183)
.++++++-.....+.|++++.. +...++|.||+|+|||++++++...+. ..++.+.- .++.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~~---------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLEK---------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 4577787777777777665531 223489999999999999999987763 33454422 1211
Q ss_pred cc-----ccc-chHHHHHHHHHHHhccCCeEEEEeCCc
Q 001031 1022 SK-----WFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1183)
Q Consensus 1022 s~-----~~G-esE~~Ir~lF~~A~k~~PsILfIDEID 1053 (1183)
-. .+. ........+...+.+..|.+|+|+||.
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 10 111 111235566677778999999999995
No 334
>CHL00181 cbbX CbbX; Provisional
Probab=96.77 E-value=0.0082 Score=68.56 Aligned_cols=127 Identities=16% Similarity=0.149 Sum_probs=75.0
Q ss_pred EEEEEcChhhhhcC------ChhhHHHHHHHHhcCCCCEEEEEeccCCCcccccCCCCCceeeccCcchhhhccccCCCC
Q 001031 706 LIVFVKDIEKSLTG------NNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDN 779 (1183)
Q Consensus 706 ~Ilf~~Die~~l~~------~~~~~~~i~~~L~~L~g~vivIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~PD~ 779 (1183)
-||||||++.+... ..+....|...|+.-.++++||++++. + ..+.+++.
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~-~------------------~~~~~~~~----- 179 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYK-D------------------RMDKFYES----- 179 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCc-H------------------HHHHHHhc-----
Confidence 49999999986431 245555666666666788999999761 0 00111111
Q ss_pred ccccccccccchHHHHHhhhhCCCeEEecCCchhHHHHHHHHHH---hhhhhhhhhccchhHHHHHhhhCCCCcccchhh
Q 001031 780 FSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQL---ERDVETLKGQSNIISIRSVLSRNGLDCVDLESL 856 (1183)
Q Consensus 780 ~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~---e~~Lpd~~gR~~Il~IHT~l~~~~l~~vdL~~L 856 (1183)
...|..+|+..|.++++..+.+..-|...+ .+.+.... ...+... +. ..
T Consensus 180 --------------np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~---i~----------~~ 231 (287)
T CHL00181 180 --------------NPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDY---IK----------KR 231 (287)
T ss_pred --------------CHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHH---HH----------Hh
Confidence 125777888999999888888776444433 23332221 1111110 00 00
Q ss_pred hcccCCCC-HHHHHHHHhhhhhhHhhhccC
Q 001031 857 CIKDQTLT-TEGVEKIVGWALSHHFMHCSE 885 (1183)
Q Consensus 857 A~~tkgfs-gAdIe~Lv~~A~s~al~r~~~ 885 (1183)
.....|+ +-+++.++..|......|...
T Consensus 232 -~~~~~~GNaR~vrn~ve~~~~~~~~r~~~ 260 (287)
T CHL00181 232 -MEQPLFANARSVRNALDRARMRQANRIFE 260 (287)
T ss_pred -CCCCCCccHHHHHHHHHHHHHHHHHHHHc
Confidence 1134677 789999999888877777644
No 335
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.72 E-value=0.012 Score=65.03 Aligned_cols=74 Identities=24% Similarity=0.368 Sum_probs=46.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc----cc--cc-----------------------c--ch
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----SK--WF-----------------------G--EG 1028 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~----s~--~~-----------------------G--es 1028 (1183)
+..-++|.|+||||||+|+..++..+ |...+.+...+-. .. .+ + +.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEK 102 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHH
Confidence 34569999999999999986665443 5566666543200 00 00 0 11
Q ss_pred HHHHHHHHHHHhccCCeEEEEeCCcccc
Q 001031 1029 EKYVKAVFSLASKIAPSVVFVDEVDSML 1056 (1183)
Q Consensus 1029 E~~Ir~lF~~A~k~~PsILfIDEID~Ll 1056 (1183)
+..+..+...+....|.+++||++-.++
T Consensus 103 ~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 103 RKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 3344555566556678999999998764
No 336
>PRK04296 thymidine kinase; Provisional
Probab=96.69 E-value=0.015 Score=62.19 Aligned_cols=69 Identities=19% Similarity=0.256 Sum_probs=40.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec--C--c----cccccccch-H----HHHHHHHHHH--hccCCeEE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEA---GANFINISM--S--S----ITSKWFGEG-E----KYVKAVFSLA--SKIAPSVV 1047 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~--s--~----L~s~~~Ges-E----~~Ir~lF~~A--~k~~PsIL 1047 (1183)
-+|++||+|+|||+++..++..+ +..++.+.. . . +... .|.. . .....++..+ ......+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 37999999999999988887765 555555532 1 1 1111 1110 0 1122333333 23456899
Q ss_pred EEeCCccc
Q 001031 1048 FVDEVDSM 1055 (1183)
Q Consensus 1048 fIDEID~L 1055 (1183)
+|||++.+
T Consensus 83 iIDEaq~l 90 (190)
T PRK04296 83 LIDEAQFL 90 (190)
T ss_pred EEEccccC
Confidence 99999755
No 337
>PRK13695 putative NTPase; Provisional
Probab=96.63 E-value=0.013 Score=61.48 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001031 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
.++|.|++|+|||+|++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999988765
No 338
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.62 E-value=0.012 Score=68.18 Aligned_cols=74 Identities=27% Similarity=0.337 Sum_probs=50.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc----------------ccccccchHHHHHHHHHHHhccCCe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----------------TSKWFGEGEKYVKAVFSLASKIAPS 1045 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L----------------~s~~~GesE~~Ir~lF~~A~k~~Ps 1045 (1183)
+-++|+||||+|||+||-.++... +...+.++...- .-......++.+..+-..++...+.
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 448999999999999999876543 677777765331 1111122344444444455667889
Q ss_pred EEEEeCCcccccC
Q 001031 1046 VVFVDEVDSMLGR 1058 (1183)
Q Consensus 1046 ILfIDEID~Ll~~ 1058 (1183)
+|+||-|-.|.+.
T Consensus 136 lIVIDSvaal~~~ 148 (325)
T cd00983 136 LIVVDSVAALVPK 148 (325)
T ss_pred EEEEcchHhhccc
Confidence 9999999988753
No 339
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.62 E-value=0.004 Score=67.02 Aligned_cols=68 Identities=21% Similarity=0.327 Sum_probs=43.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC----cEEEEecC-cccc---------ccccchHHHHHHHHHHHhccCCeEEEEeC
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGA----NFINISMS-SITS---------KWFGEGEKYVKAVFSLASKIAPSVVFVDE 1051 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~----pfi~I~~s-~L~s---------~~~GesE~~Ir~lF~~A~k~~PsILfIDE 1051 (1183)
-++|.||+|+|||+++++++..+.. .++.+..+ ++.. ..++.........+..+.+..|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3899999999999999999888742 23333211 1110 01122222345556667777899999999
Q ss_pred Cc
Q 001031 1052 VD 1053 (1183)
Q Consensus 1052 ID 1053 (1183)
+-
T Consensus 83 ir 84 (198)
T cd01131 83 MR 84 (198)
T ss_pred CC
Confidence 83
No 340
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.56 E-value=0.0042 Score=62.15 Aligned_cols=27 Identities=56% Similarity=0.913 Sum_probs=24.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001031 987 ILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eLg~pfi 1013 (1183)
|++.||||+|||++|+.++..++..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i 28 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVI 28 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEE
Confidence 789999999999999999999994443
No 341
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.53 E-value=0.015 Score=68.77 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
..||+||||+|||+|++.|++...
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Confidence 589999999999999999998773
No 342
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.51 E-value=0.019 Score=62.20 Aligned_cols=34 Identities=38% Similarity=0.616 Sum_probs=27.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s 1018 (1183)
.-++|+|+||+|||+|+..+|... +.+++.++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 458999999999999999998765 5677777653
No 343
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.51 E-value=0.0071 Score=72.01 Aligned_cols=59 Identities=24% Similarity=0.338 Sum_probs=36.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCccc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL----g~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~L 1055 (1183)
.++++.||+|||||+|+.+++... | -.+..+.|+... .. ..+.. -....+|+|||+..+
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L----~~---~~lg~--v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNI----ST---RQIGL--VGRWDVVAFDEVATL 272 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHH----HH---HHHhh--hccCCEEEEEcCCCC
Confidence 589999999999999999998762 4 112222322211 11 11111 123479999999876
No 344
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.51 E-value=0.024 Score=65.67 Aligned_cols=59 Identities=25% Similarity=0.286 Sum_probs=39.8
Q ss_pred ccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEE
Q 001031 452 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLI 524 (1183)
Q Consensus 452 sfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLi 524 (1183)
+|++|-.- ++.+..|..+.-..... ...-+.+||+||+| .....||+++|+++++++..
T Consensus 23 ~~~~~vG~--~~~~~~l~~~l~~~~~~----------~~~~~~~ll~GppG--~GKT~la~~ia~~l~~~~~~ 81 (328)
T PRK00080 23 SLDEFIGQ--EKVKENLKIFIEAAKKR----------GEALDHVLLYGPPG--LGKTTLANIIANEMGVNIRI 81 (328)
T ss_pred CHHHhcCc--HHHHHHHHHHHHHHHhc----------CCCCCcEEEECCCC--ccHHHHHHHHHHHhCCCeEE
Confidence 57776555 66666655444322111 12345799999999 89999999999999866543
No 345
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.49 E-value=0.006 Score=79.90 Aligned_cols=136 Identities=19% Similarity=0.263 Sum_probs=84.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc------ccccccchH---HHHHHHHHHHhccCCeEEEEeCCcccc
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSI------TSKWFGEGE---KYVKAVFSLASKIAPSVVFVDEVDSML 1056 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L------~s~~~GesE---~~Ir~lF~~A~k~~PsILfIDEID~Ll 1056 (1183)
.+||.||..+|||.++..+|++.|..|++++-.+. .+.|+.... ..-.+++-.|.+. .--|++||+..-
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~-GyWIVLDELNLA- 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRR-GYWIVLDELNLA- 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhc-CcEEEeeccccC-
Confidence 59999999999999999999999999999986442 222221111 1122333344432 246899999632
Q ss_pred cCCCCcchHHHHHHHHHHHHHhhcCCc-------ccCCCCEEEEEecCCCC------CCcHHHHhccCcEEEecCCCHHH
Q 001031 1057 GRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDKERVLVLAATNRPF------DLDEAVVRRLPRRLMVNLPDAPN 1123 (1183)
Q Consensus 1057 ~~r~~~~~~e~l~~il~~LL~~Ldgl~-------~k~~~~VlVIaTTN~p~------~Ld~aLlrRFd~vI~I~lPd~ee 1123 (1183)
.....++++++ +.--+.+. -.++..+++.||-|+|. -|..+|+.|| ..++|.--..++
T Consensus 968 ----pTDVLEaLNRL----LDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFddipedE 1038 (4600)
T COG5271 968 ----PTDVLEALNRL----LDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDDIPEDE 1038 (4600)
T ss_pred ----cHHHHHHHHHh----hccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-HhhhcccCcHHH
Confidence 11223333333 22111111 12467788899989874 5778999999 556665555667
Q ss_pred HHHHHHHHH
Q 001031 1124 REKIIRVIL 1132 (1183)
Q Consensus 1124 R~eILk~iL 1132 (1183)
...|++.-+
T Consensus 1039 le~ILh~rc 1047 (4600)
T COG5271 1039 LEEILHGRC 1047 (4600)
T ss_pred HHHHHhccC
Confidence 777766543
No 346
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.48 E-value=0.26 Score=56.28 Aligned_cols=111 Identities=15% Similarity=0.180 Sum_probs=62.9
Q ss_pred CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCC---------------CCCcHHHH
Q 001031 1043 APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP---------------FDLDEAVV 1107 (1183)
Q Consensus 1043 ~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p---------------~~Ld~aLl 1107 (1183)
.+-||||||+|++- + +....++..+-..++- .++.+|.+.++. .......+
T Consensus 172 ~~iViiIDdLDR~~-----~---~~i~~~l~~ik~~~~~------~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yL 237 (325)
T PF07693_consen 172 KRIVIIIDDLDRCS-----P---EEIVELLEAIKLLLDF------PNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYL 237 (325)
T ss_pred ceEEEEEcchhcCC-----c---HHHHHHHHHHHHhcCC------CCeEEEEEecHHHHHHHHHhhcCcccccccHHHHH
Confidence 46799999999982 2 2223333333222222 457777776531 02233455
Q ss_pred h-ccCcEEEecCCCHHHHHHHHHHHHhhccC----CC----------------hhhHHHHHHHcC--CCcHHHHHHHHHH
Q 001031 1108 R-RLPRRLMVNLPDAPNREKIIRVILAKEEL----AS----------------DVDLEGIANMAD--GYSGSDLKNLCVT 1164 (1183)
Q Consensus 1108 r-RFd~vI~I~lPd~eeR~eILk~iL~k~~l----~~----------------didl~~LA~~Te--GySg~DL~~L~~~ 1164 (1183)
. -|+..+.+|.|+..+...++...+..... .. ...+..+..... ..++++++.+++.
T Consensus 238 eKiiq~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~npR~ikr~iN~ 317 (325)
T PF07693_consen 238 EKIIQVPFSLPPPSPSDLERYLNELLESLESETNESDDIETLSNSASNENLRIDEILNDIIDSIDFSIGNPRDIKRFINS 317 (325)
T ss_pred HhhcCeEEEeCCCCHHHHHHHHHHHHHHhhhccccccchhhhhhcchhhhhhHHHHHHHHHHhhhhcCCCHHHHHHHHHH
Confidence 5 46777888888888888888777544211 11 122333333322 4588899888876
Q ss_pred HHH
Q 001031 1165 AAH 1167 (1183)
Q Consensus 1165 Aa~ 1167 (1183)
-..
T Consensus 318 ~~~ 320 (325)
T PF07693_consen 318 LSL 320 (325)
T ss_pred HHH
Confidence 543
No 347
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.48 E-value=0.038 Score=59.53 Aligned_cols=33 Identities=42% Similarity=0.606 Sum_probs=24.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~ 1017 (1183)
+-++|.||||||||++++.++..+ +..++.+..
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap 54 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP 54 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 357899999999999999987665 666666654
No 348
>PRK03839 putative kinase; Provisional
Probab=96.46 E-value=0.0025 Score=67.06 Aligned_cols=31 Identities=32% Similarity=0.651 Sum_probs=28.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
.|+|.|+||+|||++++.+|+.++++|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999997765
No 349
>PHA02774 E1; Provisional
Probab=96.46 E-value=0.023 Score=70.03 Aligned_cols=129 Identities=16% Similarity=0.291 Sum_probs=73.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE-EecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN-ISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG 1063 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~-I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~ 1063 (1183)
+.++|+||||||||++|.+|++.++..++. ++.... -| +..+. .-.|++|||+-.-
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~--Fw-----------Lqpl~--d~ki~vlDD~t~~-------- 491 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSH--FW-----------LQPLA--DAKIALLDDATHP-------- 491 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECccc--cc-----------cchhc--cCCEEEEecCcch--------
Confidence 579999999999999999999999655544 443210 11 11222 1259999999210
Q ss_pred hHHHHHHHHHHHHHhhcCCcc----c--C---CCCEEEEEecCCCCCCcH---HHHhccCcEEEecC--C----------
Q 001031 1064 EHEAMRKMKNEFMVNWDGLRT----K--D---KERVLVLAATNRPFDLDE---AVVRRLPRRLMVNL--P---------- 1119 (1183)
Q Consensus 1064 ~~e~l~~il~~LL~~Ldgl~~----k--~---~~~VlVIaTTN~p~~Ld~---aLlrRFd~vI~I~l--P---------- 1119 (1183)
.... +-..+...++|-+- + . -..--+|.|||..-.-++ .|.+|+ ..+.++. |
T Consensus 492 ~w~y---~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi-~~f~F~n~~P~d~~G~P~f~ 567 (613)
T PHA02774 492 CWDY---IDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRI-TVFEFPNPFPLDENGNPVFE 567 (613)
T ss_pred HHHH---HHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhE-EEEECCCCCCcCCCCCEeee
Confidence 1111 22234455555410 0 0 011346678875433333 445565 3444432 2
Q ss_pred -CHHHHHHHHHHHHhhccCCCh
Q 001031 1120 -DAPNREKIIRVILAKEELASD 1140 (1183)
Q Consensus 1120 -d~eeR~eILk~iL~k~~l~~d 1140 (1183)
+....+.+|+.+-.+..+.+.
T Consensus 568 ltd~~WKsFF~rlw~~LdL~d~ 589 (613)
T PHA02774 568 LTDANWKSFFERLWSQLDLSDQ 589 (613)
T ss_pred eCchhHHHHHHHHHHHcCCCCc
Confidence 357788888888888776643
No 350
>PRK13947 shikimate kinase; Provisional
Probab=96.46 E-value=0.0027 Score=65.88 Aligned_cols=31 Identities=45% Similarity=0.602 Sum_probs=28.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
+|+|.|+||+|||++++.+|+.++++|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999997765
No 351
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.40 E-value=0.028 Score=73.75 Aligned_cols=138 Identities=20% Similarity=0.293 Sum_probs=82.2
Q ss_pred CceEEEEcCCCChHHHH-HHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHhcc--------------CCeEEE
Q 001031 984 CKGILLFGPPGTGKTML-AKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKI--------------APSVVF 1048 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~L-AkAIA~eLg~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~--------------~PsILf 1048 (1183)
.++++++||||+|||+| .-++-.++-..++.++.+.-.. ++..+..+-+..... .-.|||
T Consensus 1494 ~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLF 1568 (3164)
T COG5245 1494 LRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLF 1568 (3164)
T ss_pred cceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccCcchhheEEE
Confidence 47899999999999994 5677777777777776543111 111222221111100 124999
Q ss_pred EeCCcccccCCCC---cchHHHHHHHHHH------HHHhhcCCcccCCCCEEEEEecCCCCCCc-----HHHHhccCcEE
Q 001031 1049 VDEVDSMLGRREN---PGEHEAMRKMKNE------FMVNWDGLRTKDKERVLVLAATNRPFDLD-----EAVVRRLPRRL 1114 (1183)
Q Consensus 1049 IDEID~Ll~~r~~---~~~~e~l~~il~~------LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld-----~aLlrRFd~vI 1114 (1183)
.|||+ | +.... +..--+++.++.. +-..|-. -.++++.+++|++.+.. +.++||- ..+
T Consensus 1569 cDeIn-L-p~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvT-----I~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~v 1640 (3164)
T COG5245 1569 CDEIN-L-PYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVT-----ICGIILYGACNPGTDEGRVKYYERFIRKP-VFV 1640 (3164)
T ss_pred eeccC-C-ccccccCCCceEEeeHHHHHhcccccchhhhHhh-----hcceEEEccCCCCCCcccCccHHHHhcCc-eEE
Confidence 99998 3 33221 1111122222221 1122211 16789999999876543 5666654 567
Q ss_pred EecCCCHHHHHHHHHHHHhh
Q 001031 1115 MVNLPDAPNREKIIRVILAK 1134 (1183)
Q Consensus 1115 ~I~lPd~eeR~eILk~iL~k 1134 (1183)
.+..|.......|.+.++..
T Consensus 1641 f~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1641 FCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred EecCcchhhHHHHHHHHHHH
Confidence 88999999988988888765
No 352
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.38 E-value=0.059 Score=60.20 Aligned_cols=132 Identities=16% Similarity=0.252 Sum_probs=74.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCcccccc--------c-c-----chHHH-------HHHHHHHH
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSITSKW--------F-G-----EGEKY-------VKAVFSLA 1039 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eLg--~pfi~I~~s~L~s~~--------~-G-----esE~~-------Ir~lF~~A 1039 (1183)
.+-.+++.|++|||||+|+..+...+. +..+.+-++.....+ + . +.+.. +.+.....
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 345799999999999999999987773 333333332211111 0 0 00111 11111111
Q ss_pred hc---cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEe
Q 001031 1040 SK---IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMV 1116 (1183)
Q Consensus 1040 ~k---~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I 1116 (1183)
.. ..+.+|+||++-.- ..-...+..+... | .+-++.+|..+.....|++.++.-.+.++.+
T Consensus 92 ~~~k~~~~~LiIlDD~~~~----------~~k~~~l~~~~~~--g----RH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~ 155 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGDK----------KLKSKILRQFFNN--G----RHYNISIIFLSQSYFHLPPNIRSNIDYFIIF 155 (241)
T ss_pred cccCCCCCeEEEEeCCCCc----------hhhhHHHHHHHhc--c----cccceEEEEEeeecccCCHHHhhcceEEEEe
Confidence 11 23679999997420 0112233334321 1 3467888999988899999987777766666
Q ss_pred cCCCHHHHHHHHHHH
Q 001031 1117 NLPDAPNREKIIRVI 1131 (1183)
Q Consensus 1117 ~lPd~eeR~eILk~i 1131 (1183)
+ -+..+...|++.+
T Consensus 156 ~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 156 N-NSKRDLENIYRNM 169 (241)
T ss_pred c-CcHHHHHHHHHhc
Confidence 5 3555655555544
No 353
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.37 E-value=0.0033 Score=63.69 Aligned_cols=31 Identities=32% Similarity=0.634 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
+|+|+|+||+|||++|+.+|..++++++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999988655
No 354
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.35 E-value=0.13 Score=57.55 Aligned_cols=132 Identities=11% Similarity=0.067 Sum_probs=89.2
Q ss_pred CceEEEEcCCC-ChHHHHHHHHHHHhCCc---------EEEEecCccc---cccccchHHHHHHHHHHHhc----cCCeE
Q 001031 984 CKGILLFGPPG-TGKTMLAKAVATEAGAN---------FINISMSSIT---SKWFGEGEKYVKAVFSLASK----IAPSV 1046 (1183)
Q Consensus 984 ~~gVLL~GPPG-TGKT~LAkAIA~eLg~p---------fi~I~~s~L~---s~~~GesE~~Ir~lF~~A~k----~~PsI 1046 (1183)
.+..||.|..+ +||..++..+++.+.+. ++.+....-. +..+ ....+|.+-..+.. ...-|
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I--~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNI--SIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcc--cHHHHHHHHHHHhhCcccCCcEE
Confidence 46799999998 99999999888877332 2222211000 0111 23345555554432 34469
Q ss_pred EEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHH
Q 001031 1047 VFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREK 1126 (1183)
Q Consensus 1047 LfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~e 1126 (1183)
++|+++|.|- ....+.|+..++. ++.++++|..|..+..|.+++++|+ ..+.++.|....-.+
T Consensus 93 iII~~ae~mt------------~~AANALLKtLEE----PP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e 155 (263)
T PRK06581 93 AIIYSAELMN------------LNAANSCLKILED----APKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNE 155 (263)
T ss_pred EEEechHHhC------------HHHHHHHHHhhcC----CCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHH
Confidence 9999999882 2344566666654 3467888888888999999999999 789999998877777
Q ss_pred HHHHHHhh
Q 001031 1127 IIRVILAK 1134 (1183)
Q Consensus 1127 ILk~iL~k 1134 (1183)
+...++..
T Consensus 156 ~~~~~~~p 163 (263)
T PRK06581 156 LYSQFIQP 163 (263)
T ss_pred HHHHhccc
Confidence 76666544
No 355
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.35 E-value=0.019 Score=60.80 Aligned_cols=71 Identities=21% Similarity=0.297 Sum_probs=46.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc----------------c-ccchHHHHHHHHHHHhccCCeEEEE
Q 001031 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK----------------W-FGEGEKYVKAVFSLASKIAPSVVFV 1049 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~----------------~-~GesE~~Ir~lF~~A~k~~PsILfI 1049 (1183)
+|+.|++|+|||++|..++...+.+++++....-.+. | ..+....+...+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 6899999999999999999887778877765432111 0 0111123333332211 4679999
Q ss_pred eCCcccccCC
Q 001031 1050 DEVDSMLGRR 1059 (1183)
Q Consensus 1050 DEID~Ll~~r 1059 (1183)
|-+..|..+-
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9999887543
No 356
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.35 E-value=0.023 Score=61.47 Aligned_cols=69 Identities=26% Similarity=0.441 Sum_probs=41.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH-----hCCcEE-------------EEecCc-cccc--cccchHHHHHHHHHHHhccC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATE-----AGANFI-------------NISMSS-ITSK--WFGEGEKYVKAVFSLASKIA 1043 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~e-----Lg~pfi-------------~I~~s~-L~s~--~~GesE~~Ir~lF~~A~k~~ 1043 (1183)
.-++|.||+|+|||+|.+.|+.. .|.++- .+...+ +... .+......+..++..+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 46899999999999999999743 344321 111111 1000 01111134566666665557
Q ss_pred CeEEEEeCCc
Q 001031 1044 PSVVFVDEVD 1053 (1183)
Q Consensus 1044 PsILfIDEID 1053 (1183)
|.+|++||.-
T Consensus 106 p~llllDEp~ 115 (199)
T cd03283 106 PVLFLLDEIF 115 (199)
T ss_pred CeEEEEeccc
Confidence 9999999974
No 357
>PRK00625 shikimate kinase; Provisional
Probab=96.29 E-value=0.0037 Score=66.22 Aligned_cols=31 Identities=35% Similarity=0.491 Sum_probs=29.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
.|+|.|.||+|||++++.+|+.++++|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998876
No 358
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.076 Score=63.26 Aligned_cols=160 Identities=19% Similarity=0.209 Sum_probs=83.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecCcccc----------c------cccchHHHHHHHHHHHh
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSSITS----------K------WFGEGEKYVKAVFSLAS 1040 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL-------g~pfi~I~~s~L~s----------~------~~GesE~~Ir~lF~~A~ 1040 (1183)
+.-++|+||+|+|||+++..+|..+ +..+..+++..... . ........+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 3579999999999999999998765 23444443332110 0 0111122233333332
Q ss_pred ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccC----cEEEe
Q 001031 1041 KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLP----RRLMV 1116 (1183)
Q Consensus 1041 k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd----~vI~I 1116 (1183)
..-.+|+||.+.+.. ..... +.++...++.... ....++|+.+|.....+... ..+|. ..+.+
T Consensus 253 -~~~DlVLIDTaGr~~------~~~~~----l~el~~~l~~~~~-~~e~~LVlsat~~~~~~~~~-~~~~~~~~~~~~I~ 319 (388)
T PRK12723 253 -KDFDLVLVDTIGKSP------KDFMK----LAEMKELLNACGR-DAEFHLAVSSTTKTSDVKEI-FHQFSPFSYKTVIF 319 (388)
T ss_pred -CCCCEEEEcCCCCCc------cCHHH----HHHHHHHHHhcCC-CCeEEEEEcCCCCHHHHHHH-HHHhcCCCCCEEEE
Confidence 345799999998652 11111 2233333332221 22567888888776666643 34431 24556
Q ss_pred cCCCHHHHHH-HHHHHHhh----------ccCCCh---hhHHHHHHHcCCCcHHH
Q 001031 1117 NLPDAPNREK-IIRVILAK----------EELASD---VDLEGIANMADGYSGSD 1157 (1183)
Q Consensus 1117 ~lPd~eeR~e-ILk~iL~k----------~~l~~d---idl~~LA~~TeGySg~D 1157 (1183)
.-.|...+.- ++...... ..+..| .+-..+++..-||+-++
T Consensus 320 TKlDet~~~G~~l~~~~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g~~~~~ 374 (388)
T PRK12723 320 TKLDETTCVGNLISLIYEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYRISD 374 (388)
T ss_pred EeccCCCcchHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhcCCCccc
Confidence 6556554433 33333221 112122 23566777777887755
No 359
>PRK08233 hypothetical protein; Provisional
Probab=96.26 E-value=0.032 Score=58.07 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=25.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-CcEEEEe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG-ANFINIS 1016 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg-~pfi~I~ 1016 (1183)
.-|.|.|+||+||||+|+.|+..++ ..++.++
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 3478899999999999999999985 4444444
No 360
>PRK14974 cell division protein FtsY; Provisional
Probab=96.26 E-value=0.036 Score=64.77 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=27.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s 1018 (1183)
+.-++|.|++|+|||+++..+|..+ +..+..+++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4679999999999999999888776 5555555543
No 361
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.25 E-value=0.031 Score=61.83 Aligned_cols=39 Identities=28% Similarity=0.494 Sum_probs=27.8
Q ss_pred CCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001031 978 GQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1183)
Q Consensus 978 ~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~ 1017 (1183)
+++ .+...+||+||||+|||+|+..++.+. |-+.+.+..
T Consensus 16 GG~-~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 16 GGI-PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred CCC-cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 443 345679999999999999998776542 555555543
No 362
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.25 E-value=0.0077 Score=67.49 Aligned_cols=96 Identities=21% Similarity=0.378 Sum_probs=59.1
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec-Cccc
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISM-SSIT 1021 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg---~pfi~I~~-s~L~ 1021 (1183)
.++++++-.....+.+.+++...+ +....+|+.|++|+|||+++++++..+. ..++.+.- .++.
T Consensus 101 ~sle~l~~~~~~~~~~~~~l~~~v------------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 101 FSLEDLGESGSIPEEIAEFLRSAV------------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp -CHCCCCHTHHCHHHHHHHHHHCH------------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-
T ss_pred ccHhhccCchhhHHHHHHHHhhcc------------ccceEEEEECCCccccchHHHHHhhhccccccceEEecccccee
Confidence 466677666665566666554311 1235799999999999999999998873 34444432 1211
Q ss_pred cc------cc-cchHHHHHHHHHHHhccCCeEEEEeCCc
Q 001031 1022 SK------WF-GEGEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1183)
Q Consensus 1022 s~------~~-GesE~~Ir~lF~~A~k~~PsILfIDEID 1053 (1183)
-. .. .........++..+.+..|.+|+|.||.
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 169 LPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp -SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred ecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 11 00 1122346667778888999999999995
No 363
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.24 E-value=0.024 Score=62.45 Aligned_cols=71 Identities=27% Similarity=0.376 Sum_probs=46.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--C------CcEEEEec-Cccccccccc-------------hHHHHHHHHHHHhcc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA--G------ANFINISM-SSITSKWFGE-------------GEKYVKAVFSLASKI 1042 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL--g------~pfi~I~~-s~L~s~~~Ge-------------sE~~Ir~lF~~A~k~ 1042 (1183)
.+.||.||||+|||+|.+-||+-+ + ..+..++- +++.+...|. ..-.-..+....+.+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 468999999999999999999876 2 22333443 2232222121 112334456667888
Q ss_pred CCeEEEEeCCccc
Q 001031 1043 APSVVFVDEVDSM 1055 (1183)
Q Consensus 1043 ~PsILfIDEID~L 1055 (1183)
.|-||++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 9999999999754
No 364
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.21 E-value=0.034 Score=62.40 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGA 1010 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~ 1010 (1183)
..++|+||+|+|||+|++.+++.+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 46999999999999999999988743
No 365
>PRK13948 shikimate kinase; Provisional
Probab=96.21 E-value=0.005 Score=65.84 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=32.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 981 ~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
.+++..|+|.|.+|+|||++++.+|+.++.+|+..|
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 456678999999999999999999999999998665
No 366
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.21 E-value=0.023 Score=68.86 Aligned_cols=75 Identities=21% Similarity=0.325 Sum_probs=50.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc------cccc--------hHHHHHHHHHHHhccCCe
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFGE--------GEKYVKAVFSLASKIAPS 1045 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~------~~Ge--------sE~~Ir~lF~~A~k~~Ps 1045 (1183)
+..-+||.|+||+|||+|+..++..+ +.++++++..+-... .++. .+..+..+...+.+..|.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~ 172 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENPQ 172 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCCc
Confidence 44558999999999999999987765 456777765432111 0110 112344555666777899
Q ss_pred EEEEeCCccccc
Q 001031 1046 VVFVDEVDSMLG 1057 (1183)
Q Consensus 1046 ILfIDEID~Ll~ 1057 (1183)
+|+||.|..+..
T Consensus 173 ~vVIDSIq~l~~ 184 (454)
T TIGR00416 173 ACVIDSIQTLYS 184 (454)
T ss_pred EEEEecchhhcc
Confidence 999999998753
No 367
>PRK14532 adenylate kinase; Provisional
Probab=96.20 E-value=0.0042 Score=65.66 Aligned_cols=30 Identities=37% Similarity=0.671 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
.|+|.||||+|||++|+.||+.+|++++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 589999999999999999999999877654
No 368
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.18 E-value=0.0043 Score=65.05 Aligned_cols=29 Identities=21% Similarity=0.519 Sum_probs=25.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 987 ILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
|+|+||||+|||++|+.||..+++.++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999998765543
No 369
>PRK10536 hypothetical protein; Provisional
Probab=96.18 E-value=0.022 Score=64.14 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 001031 986 GILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
-+++.||+|||||+||.+++.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999885
No 370
>PRK13949 shikimate kinase; Provisional
Probab=96.17 E-value=0.0044 Score=65.27 Aligned_cols=32 Identities=47% Similarity=0.708 Sum_probs=29.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
+.|+|.|+||+|||++++.+|+.++++|+.++
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36999999999999999999999999988866
No 371
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.17 E-value=0.019 Score=60.66 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=45.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHH--------------------HHHHHHHHHhccCCe
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEK--------------------YVKAVFSLASKIAPS 1045 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~GesE~--------------------~Ir~lF~~A~k~~Ps 1045 (1183)
.+|+.|+||+|||++|..++..++.+++.+........ +..+ .+..++... ..++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 48999999999999999999998888777765432211 1111 233333221 23467
Q ss_pred EEEEeCCccccc
Q 001031 1046 VVFVDEVDSMLG 1057 (1183)
Q Consensus 1046 ILfIDEID~Ll~ 1057 (1183)
+++||-+..|..
T Consensus 79 ~VlID~Lt~~~~ 90 (170)
T PRK05800 79 CVLVDCLTTWVT 90 (170)
T ss_pred EEEehhHHHHHH
Confidence 899999998864
No 372
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.17 E-value=0.038 Score=60.59 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=28.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 001031 982 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 1017 (1183)
Q Consensus 982 kP~~gVLL~GPPGTGKT~LAkAIA~eL----g~pfi~I~~ 1017 (1183)
++..-++|.|+||+|||+++..++... +.+++.+++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 344568999999999999999886554 778777764
No 373
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.17 E-value=0.037 Score=62.07 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=27.8
Q ss_pred ccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhc
Q 001031 484 YASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF 518 (1183)
Q Consensus 484 ~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f 518 (1183)
.+....+..+.|||.|||| ....+|||++|+++
T Consensus 34 ~g~~~~~~~~~vll~GppG--tGKTtlA~~ia~~l 66 (261)
T TIGR02881 34 EGLKTSKQVLHMIFKGNPG--TGKTTVARILGKLF 66 (261)
T ss_pred cCCCCCCCcceEEEEcCCC--CCHHHHHHHHHHHH
Confidence 4445566668899999999 79999999999987
No 374
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.16 E-value=0.012 Score=66.86 Aligned_cols=69 Identities=26% Similarity=0.375 Sum_probs=43.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC----------cEEEEe-cCccccc-------cccc------hHHHHHHHHHHHh
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGA----------NFINIS-MSSITSK-------WFGE------GEKYVKAVFSLAS 1040 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~----------pfi~I~-~s~L~s~-------~~Ge------sE~~Ir~lF~~A~ 1040 (1183)
.+++|.||+|+|||+|.++++..+.. .+..++ ..++... .++. .......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 58999999999999999999988732 222221 1111110 0110 1112445677777
Q ss_pred ccCCeEEEEeCCc
Q 001031 1041 KIAPSVVFVDEVD 1053 (1183)
Q Consensus 1041 k~~PsILfIDEID 1053 (1183)
.+.|.||++||+.
T Consensus 192 ~~~P~villDE~~ 204 (270)
T TIGR02858 192 SMSPDVIVVDEIG 204 (270)
T ss_pred hCCCCEEEEeCCC
Confidence 7899999999973
No 375
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.16 E-value=0.015 Score=68.61 Aligned_cols=108 Identities=23% Similarity=0.320 Sum_probs=57.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEecCcccc----------ccccc------hHHHHHHHHHHHhccC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA----G-ANFINISMSSITS----------KWFGE------GEKYVKAVFSLASKIA 1043 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL----g-~pfi~I~~s~L~s----------~~~Ge------sE~~Ir~lF~~A~k~~ 1043 (1183)
..++|.||+|+|||+++..||..+ | ..+..+....+.. ...|. ....+...+ .+...
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l--~~l~~ 215 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL--AELRN 215 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH--HHhcC
Confidence 469999999999999999998764 3 2344444333210 00010 001112222 22234
Q ss_pred CeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHH
Q 001031 1044 PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAV 1106 (1183)
Q Consensus 1044 PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aL 1106 (1183)
..+|+||..... +.. . .+.+.+..+..... ....++||.+|...+.+...+
T Consensus 216 ~DlVLIDTaG~~------~~d-~----~l~e~La~L~~~~~-~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 216 KHMVLIDTIGMS------QRD-R----TVSDQIAMLHGADT-PVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred CCEEEEcCCCCC------ccc-H----HHHHHHHHHhccCC-CCeEEEEecCccChHHHHHHH
Confidence 589999998643 111 1 12222333332221 225578888888777766543
No 376
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.16 E-value=0.021 Score=57.78 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=38.5
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
.+.|+.-+.+.+.+.+...+..+ . .+.|--+-|+|++|||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~------~-p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP------N-PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC------C-CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 57888888888888776544321 1 1122446799999999999999999986
No 377
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.15 E-value=0.0043 Score=64.04 Aligned_cols=32 Identities=47% Similarity=0.801 Sum_probs=29.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
.+||++|-||||||+|+..||..++++++.+.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 48999999999999999999999999998875
No 378
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.15 E-value=0.045 Score=64.06 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=44.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~ 1019 (1183)
.+.+.+.+...|..++-. +. ..-|..|.|+|-.|||||++.+.+.+.++.+.+.+++-+
T Consensus 7 ~v~~Re~qi~~L~~Llg~---------~~--~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~e 65 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGN---------NS--CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVE 65 (438)
T ss_pred CccchHHHHHHHHHHhCC---------CC--cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHH
Confidence 345566777777665531 11 123356899999999999999999999999998888754
No 379
>PRK06217 hypothetical protein; Validated
Probab=96.14 E-value=0.0051 Score=65.14 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=28.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
.|+|.|++|+|||++|++|++.++++++.++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5999999999999999999999999987765
No 380
>PRK09354 recA recombinase A; Provisional
Probab=96.14 E-value=0.039 Score=64.68 Aligned_cols=73 Identities=25% Similarity=0.315 Sum_probs=48.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc----------------cccccchHHHHHHHHHHHhccCCe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----------------SKWFGEGEKYVKAVFSLASKIAPS 1045 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~----------------s~~~GesE~~Ir~lF~~A~k~~Ps 1045 (1183)
+-++|+||+|+|||+|+-.++... |...++++...-. -......++.+..+-...+...+.
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~ 140 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVD 140 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCC
Confidence 458999999999999999876443 6677777754311 111122344444444445666789
Q ss_pred EEEEeCCccccc
Q 001031 1046 VVFVDEVDSMLG 1057 (1183)
Q Consensus 1046 ILfIDEID~Ll~ 1057 (1183)
+|+||-|-.|.+
T Consensus 141 lIVIDSvaaL~~ 152 (349)
T PRK09354 141 LIVVDSVAALVP 152 (349)
T ss_pred EEEEeChhhhcc
Confidence 999999998875
No 381
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.14 E-value=0.023 Score=60.60 Aligned_cols=29 Identities=45% Similarity=0.855 Sum_probs=25.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~ 1014 (1183)
.|+|.||||+||||+|+.||+.++++.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hls 30 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLD 30 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 58999999999999999999996665543
No 382
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.11 E-value=0.017 Score=68.34 Aligned_cols=68 Identities=22% Similarity=0.311 Sum_probs=45.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecC-ccc-----------cccccchHHHHHHHHHHHhccCCeEEE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAG-----ANFINISMS-SIT-----------SKWFGEGEKYVKAVFSLASKIAPSVVF 1048 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg-----~pfi~I~~s-~L~-----------s~~~GesE~~Ir~lF~~A~k~~PsILf 1048 (1183)
.+|++||+|+|||+++++++.++. ..++.+.-+ ++. ...+|............+.+..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999988762 345555322 211 011122222345566777888999999
Q ss_pred EeCCc
Q 001031 1049 VDEVD 1053 (1183)
Q Consensus 1049 IDEID 1053 (1183)
+.|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99995
No 383
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.10 E-value=0.069 Score=58.21 Aligned_cols=73 Identities=22% Similarity=0.393 Sum_probs=47.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCcccc-----------------------------cc----c
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITS-----------------------------KW----F 1025 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL----g~pfi~I~~s~L~s-----------------------------~~----~ 1025 (1183)
+..-+||.||||+|||.|+..++... |-+++.+...+-.. .. .
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~~ 97 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWSP 97 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-TS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccccc
Confidence 34569999999999999999876432 67777776533100 00 0
Q ss_pred cchHHHHHHHHHHHhccCCeEEEEeCCccc
Q 001031 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1183)
Q Consensus 1026 GesE~~Ir~lF~~A~k~~PsILfIDEID~L 1055 (1183)
...+..+..+........+.+++||.+..+
T Consensus 98 ~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 98 NDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 122344555556666777899999999988
No 384
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.09 E-value=0.021 Score=69.85 Aligned_cols=94 Identities=18% Similarity=0.271 Sum_probs=60.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecC-cc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SI 1020 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg---~pfi~I~~s-~L 1020 (1183)
..++++++-.++..+.+.+.+.. +..-+|++||+|+|||++..++...+. ..++.+.-+ ++
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~---------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR---------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc---------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 35778888778888887776542 212379999999999999998877763 345554321 11
Q ss_pred c-----cccccc-hHHHHHHHHHHHhccCCeEEEEeCCc
Q 001031 1021 T-----SKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1183)
Q Consensus 1021 ~-----s~~~Ge-sE~~Ir~lF~~A~k~~PsILfIDEID 1053 (1183)
. ...+.. .......+...+-+..|.||+|.||-
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 1 101111 11123445566678899999999995
No 385
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.09 E-value=0.051 Score=59.70 Aligned_cols=35 Identities=31% Similarity=0.362 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~ 1017 (1183)
+..-++++|+||+|||+|+..++... +..++.++.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 34569999999999999999997653 666666664
No 386
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.09 E-value=0.056 Score=62.88 Aligned_cols=98 Identities=17% Similarity=0.330 Sum_probs=55.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcE-EEEecCccccc-------cccch---HHHHHHHHHHHhccCCeEEEE
Q 001031 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANF-INISMSSITSK-------WFGEG---EKYVKAVFSLASKIAPSVVFV 1049 (1183)
Q Consensus 981 ~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pf-i~I~~s~L~s~-------~~Ges---E~~Ir~lF~~A~k~~PsILfI 1049 (1183)
..+++|+.|||+-|.|||+|.-..-+.+..+- ..+....++.. ..|.. ......++. .--||+|
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~-----~~~vLCf 136 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAA-----ETRVLCF 136 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHh-----cCCEEEe
Confidence 34779999999999999999999988774422 11111111110 11211 111111111 2249999
Q ss_pred eCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCC
Q 001031 1050 DEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1183)
Q Consensus 1050 DEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~ 1098 (1183)
||++.= +..+.-.+.+++.+|+. ..|.+++|+|.
T Consensus 137 DEF~Vt-----DI~DAMiL~rL~~~Lf~----------~GV~lvaTSN~ 170 (367)
T COG1485 137 DEFEVT-----DIADAMILGRLLEALFA----------RGVVLVATSNT 170 (367)
T ss_pred eeeeec-----ChHHHHHHHHHHHHHHH----------CCcEEEEeCCC
Confidence 999732 33333444555555542 46899999986
No 387
>PRK14531 adenylate kinase; Provisional
Probab=96.07 E-value=0.006 Score=64.68 Aligned_cols=31 Identities=29% Similarity=0.635 Sum_probs=27.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
..|+|+||||+|||++++.||..+|++++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 3699999999999999999999999887654
No 388
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.05 E-value=0.039 Score=62.96 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=22.6
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhcC
Q 001031 492 CPRILLSGPAGSEIYQETLAKALAKHFS 519 (1183)
Q Consensus 492 s~rILLsgp~GsE~Yqe~LaKALA~~f~ 519 (1183)
+..|||.|||| ....++|+++|+.+.
T Consensus 58 ~~~vll~G~pG--TGKT~lA~~ia~~l~ 83 (284)
T TIGR02880 58 TLHMSFTGNPG--TGKTTVALRMAQILH 83 (284)
T ss_pred CceEEEEcCCC--CCHHHHHHHHHHHHH
Confidence 34699999999 599999999999875
No 389
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.03 E-value=0.0058 Score=61.16 Aligned_cols=30 Identities=33% Similarity=0.659 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 987 ILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
|+|.|+||+|||++|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998776
No 390
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.03 E-value=0.013 Score=68.50 Aligned_cols=69 Identities=20% Similarity=0.304 Sum_probs=45.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecC-ccc---------cccccchHHHHHHHHHHHhccCCeEEEEe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-SIT---------SKWFGEGEKYVKAVFSLASKIAPSVVFVD 1050 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg----~pfi~I~~s-~L~---------s~~~GesE~~Ir~lF~~A~k~~PsILfID 1050 (1183)
..+||.||+|+|||+++++++..+. ..++.+.-+ ++. ....|.........+..+-+..|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 4589999999999999999988764 233433211 111 01112212234556667778899999999
Q ss_pred CCc
Q 001031 1051 EVD 1053 (1183)
Q Consensus 1051 EID 1053 (1183)
|+.
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 994
No 391
>PRK06762 hypothetical protein; Provisional
Probab=96.02 E-value=0.015 Score=60.11 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=29.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L 1020 (1183)
.-|+|+|+||+|||++|+.++..++..++.++...+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~ 38 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVV 38 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHH
Confidence 458999999999999999999999666666665443
No 392
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.01 E-value=0.028 Score=61.30 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=27.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCc
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 1019 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL---------g~pfi~I~~s~ 1019 (1183)
..-+.|+||||+|||+|+..++... +..++.++...
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 3458999999999999999997543 25667777544
No 393
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.01 E-value=0.012 Score=56.46 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001031 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
+++|+||+|+|||+++..++..+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999888776665
No 394
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.00 E-value=0.0058 Score=64.43 Aligned_cols=29 Identities=45% Similarity=0.752 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 987 ILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
|+|+|+||+|||++|+.||..+++.++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 89999999999999999999998876654
No 395
>PRK05973 replicative DNA helicase; Provisional
Probab=95.98 E-value=0.049 Score=60.71 Aligned_cols=36 Identities=39% Similarity=0.543 Sum_probs=27.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001031 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1183)
Q Consensus 982 kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~ 1017 (1183)
.+..-+||.|+||+|||+|+-.++... |.+++.+++
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 444569999999999999999887654 666666654
No 396
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.97 E-value=0.052 Score=60.70 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 1017 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL----g~pfi~I~~ 1017 (1183)
+..-++|.|+||+|||+++..++..+ +.+++.+++
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 44568999999999999999887653 667766665
No 397
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.96 E-value=0.039 Score=59.87 Aligned_cols=37 Identities=32% Similarity=0.460 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---C------CcEEEEecCc
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---G------ANFINISMSS 1019 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g------~pfi~I~~s~ 1019 (1183)
+..-+.|+||||+|||+|+..+|... + ..+++++...
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 33458999999999999999998653 3 5667776543
No 398
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.95 E-value=0.0065 Score=61.75 Aligned_cols=29 Identities=41% Similarity=0.704 Sum_probs=25.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 987 ILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
++|.|+||+|||++|+.++..++..++..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~ 30 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDG 30 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeC
Confidence 68999999999999999999988766543
No 399
>PRK10436 hypothetical protein; Provisional
Probab=95.95 E-value=0.024 Score=68.91 Aligned_cols=94 Identities=18% Similarity=0.291 Sum_probs=61.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecC-cc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SI 1020 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg---~pfi~I~~s-~L 1020 (1183)
..++++++-.+...+.+++.+.. +..-||++||+|+|||++..++..+++ .+++.+--+ ++
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~---------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~ 258 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ---------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEI 258 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh---------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccc
Confidence 34778888878888788776542 223489999999999998888777763 344444321 11
Q ss_pred c-----cccccc-hHHHHHHHHHHHhccCCeEEEEeCCc
Q 001031 1021 T-----SKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1183)
Q Consensus 1021 ~-----s~~~Ge-sE~~Ir~lF~~A~k~~PsILfIDEID 1053 (1183)
. ...++. .......+...+-+..|.||+|.||-
T Consensus 259 ~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 259 PLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred cCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 1 001111 11234556667778899999999995
No 400
>PRK13764 ATPase; Provisional
Probab=95.94 E-value=0.02 Score=71.41 Aligned_cols=68 Identities=22% Similarity=0.358 Sum_probs=41.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEe-cCcc-----ccccccchHHHHHHHHHHHhccCCeEEEEeCCc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG---ANFINIS-MSSI-----TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg---~pfi~I~-~s~L-----~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID 1053 (1183)
.++|++||||+|||+++++++..+. ..+..+. ..++ ...+. ............+.+..|.+|++||+-
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~-~~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYS-KLEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEe-eccccHHHHHHHHHhhCCCEEEECCCC
Confidence 5799999999999999999998873 3333332 1111 11111 000111223333356789999999995
No 401
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.93 E-value=0.024 Score=68.57 Aligned_cols=95 Identities=22% Similarity=0.292 Sum_probs=62.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCce-EEEEcCCCChHHHHHHHHHHHhCCcEE---EEecC
Q 001031 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKG-ILLFGPPGTGKTMLAKAVATEAGANFI---NISMS 1018 (1183)
Q Consensus 943 e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~g-VLL~GPPGTGKT~LAkAIA~eLg~pfi---~I~~s 1018 (1183)
....+|++++......+.+.+.+. +| .| +|++||.|+|||+...++..+++.+.. .+.-+
T Consensus 232 ~~~l~l~~Lg~~~~~~~~~~~~~~---------------~p-~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDP 295 (500)
T COG2804 232 QVILDLEKLGMSPFQLARLLRLLN---------------RP-QGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDP 295 (500)
T ss_pred cccCCHHHhCCCHHHHHHHHHHHh---------------CC-CeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCC
Confidence 335678889988888888888664 23 44 899999999999999999999865443 33211
Q ss_pred ------ccccccccc-hHHHHHHHHHHHhccCCeEEEEeCCc
Q 001031 1019 ------SITSKWFGE-GEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1183)
Q Consensus 1019 ------~L~s~~~Ge-sE~~Ir~lF~~A~k~~PsILfIDEID 1053 (1183)
.+..-.+.. ..-.....+...-++.|.||+|.||.
T Consensus 296 VE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 296 VEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred eeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 111100100 00123344555668899999999995
No 402
>PRK14530 adenylate kinase; Provisional
Probab=95.91 E-value=0.0074 Score=65.55 Aligned_cols=30 Identities=37% Similarity=0.645 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
.|+|.||||+|||++++.||+.++++++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 699999999999999999999999887754
No 403
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.89 E-value=0.075 Score=64.20 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=29.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~ 1019 (1183)
++..++|+|++|+|||+++..+|..+ |..+..+++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 45679999999999999999998877 56666665543
No 404
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.86 E-value=0.36 Score=55.89 Aligned_cols=116 Identities=20% Similarity=0.221 Sum_probs=64.0
Q ss_pred CCeEEEEeCCcccccCCC--Cc---chHHHHHHHHHHHHHhhcCCcccCCCCEE-EEEecCC---CC--CCcHHHHhccC
Q 001031 1043 APSVVFVDEVDSMLGRRE--NP---GEHEAMRKMKNEFMVNWDGLRTKDKERVL-VLAATNR---PF--DLDEAVVRRLP 1111 (1183)
Q Consensus 1043 ~PsILfIDEID~Ll~~r~--~~---~~~e~l~~il~~LL~~Ldgl~~k~~~~Vl-VIaTTN~---p~--~Ld~aLlrRFd 1111 (1183)
.|.++-||++..|+.... ++ ..+...-.+...|+..+.+-..-.++.++ .+++|.. +. .++.++..+-.
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~ 235 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKEG 235 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhccccC
Confidence 467888999999996421 11 11222234555555554433322233332 2555522 22 45555554322
Q ss_pred ---------------------cEEEecCCCHHHHHHHHHHHHhhccCC----ChhhHHHHHHHcCCCcHHHHH
Q 001031 1112 ---------------------RRLMVNLPDAPNREKIIRVILAKEELA----SDVDLEGIANMADGYSGSDLK 1159 (1183)
Q Consensus 1112 ---------------------~vI~I~lPd~eeR~eILk~iL~k~~l~----~didl~~LA~~TeGySg~DL~ 1159 (1183)
..+.++..+.+|-..+++.+....-+. +....+.+...+. ..++++.
T Consensus 236 ~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~-GNp~el~ 307 (309)
T PF10236_consen 236 FPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSN-GNPRELE 307 (309)
T ss_pred CCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcC-CCHHHhc
Confidence 168888889999999999998764443 2333444444444 4566654
No 405
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.86 E-value=0.029 Score=64.54 Aligned_cols=69 Identities=25% Similarity=0.386 Sum_probs=46.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecC-ccc-------cccccchHHHHHHHHHHHhccCCeEEEEeC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMS-SIT-------SKWFGEGEKYVKAVFSLASKIAPSVVFVDE 1051 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg-----~pfi~I~~s-~L~-------s~~~GesE~~Ir~lF~~A~k~~PsILfIDE 1051 (1183)
.++|+.|++|+|||+++++++..+. ..++.+.-. ++. .-..+........++..+.+..|.+|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 5799999999999999999998862 334333211 111 000111111466788888899999999999
Q ss_pred Cc
Q 001031 1052 VD 1053 (1183)
Q Consensus 1052 ID 1053 (1183)
|-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 94
No 406
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.81 E-value=0.071 Score=59.99 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=26.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~ 1017 (1183)
+..-+|++|+||||||+|+..+|... |-+++.++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 33558999999999999999886643 556655553
No 407
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.80 E-value=0.0073 Score=63.99 Aligned_cols=32 Identities=31% Similarity=0.532 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
.+|.|.|++|+|||++.+++|+.++.+|+..|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998776
No 408
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.79 E-value=0.0085 Score=66.31 Aligned_cols=32 Identities=34% Similarity=0.650 Sum_probs=28.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
..|+|.||||+|||++|+.||+.++++++.++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 46999999999999999999999998877654
No 409
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.78 E-value=0.085 Score=56.17 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=18.0
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 001031 987 ILLFGPPGTGKTMLAKAVA 1005 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA 1005 (1183)
++|+||.|+|||++.+.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999987
No 410
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.77 E-value=0.028 Score=70.05 Aligned_cols=94 Identities=19% Similarity=0.236 Sum_probs=61.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecC-c-
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-S- 1019 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg---~pfi~I~~s-~- 1019 (1183)
..++++++-.+...+.+.+++.. +..-||++||+|+|||++..++.+.++ .+++.+--+ +
T Consensus 292 ~~~l~~lg~~~~~~~~l~~~~~~---------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~ 356 (564)
T TIGR02538 292 QLDIDKLGFEPDQKALFLEAIHK---------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEI 356 (564)
T ss_pred cCCHHHcCCCHHHHHHHHHHHHh---------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCcee
Confidence 35678888888888888776642 223489999999999999888887774 334443221 1
Q ss_pred ----ccccccc-chHHHHHHHHHHHhccCCeEEEEeCCc
Q 001031 1020 ----ITSKWFG-EGEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1183)
Q Consensus 1020 ----L~s~~~G-esE~~Ir~lF~~A~k~~PsILfIDEID 1053 (1183)
+....+. ........++..+-+..|.||+|.||.
T Consensus 357 ~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 357 NLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred cCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 1111111 111234556667788999999999995
No 411
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.74 E-value=0.064 Score=57.75 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.8
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVA 1005 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA 1005 (1183)
..++|+||.|+|||++.+.|+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 569999999999999999998
No 412
>PF13479 AAA_24: AAA domain
Probab=95.74 E-value=0.037 Score=60.31 Aligned_cols=68 Identities=22% Similarity=0.303 Sum_probs=38.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc-EEEEecCcc-cccc-----c-cchHHHHHHHHHHH--hccCCeEEEEeCCcc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGAN-FINISMSSI-TSKW-----F-GEGEKYVKAVFSLA--SKIAPSVVFVDEVDS 1054 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~p-fi~I~~s~L-~s~~-----~-GesE~~Ir~lF~~A--~k~~PsILfIDEID~ 1054 (1183)
..+||||+||+|||++|..+ +-+ |+.+..... ...+ + -..-..+.+.+..+ ....-.+|+||.++.
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~ 79 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISW 79 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHH
Confidence 57999999999999999888 222 222322210 0000 0 01122334444332 233457999999887
Q ss_pred cc
Q 001031 1055 ML 1056 (1183)
Q Consensus 1055 Ll 1056 (1183)
+.
T Consensus 80 ~~ 81 (213)
T PF13479_consen 80 LE 81 (213)
T ss_pred HH
Confidence 63
No 413
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.73 E-value=0.057 Score=55.26 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=18.9
Q ss_pred ceEEEEcCCCChHHH-HHHHHHHHh
Q 001031 985 KGILLFGPPGTGKTM-LAKAVATEA 1008 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~-LAkAIA~eL 1008 (1183)
..+++.||+|+|||. ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 479999999999999 555555554
No 414
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.72 E-value=0.074 Score=57.22 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.5
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVA 1005 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA 1005 (1183)
+.++|+||.|+|||+|.+.|+
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999988
No 415
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.72 E-value=0.091 Score=57.48 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=20.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVAT 1006 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~ 1006 (1183)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5799999999999999999973
No 416
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.72 E-value=0.0079 Score=62.05 Aligned_cols=28 Identities=43% Similarity=0.771 Sum_probs=24.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001031 987 ILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eLg~pfi~ 1014 (1183)
|+|.||+|+|||++|+.+++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999876653
No 417
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.70 E-value=0.011 Score=61.54 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=29.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
..++|.|++|+|||++++.+|..+|++|+..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 36899999999999999999999999988654
No 418
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=95.70 E-value=0.04 Score=64.79 Aligned_cols=28 Identities=39% Similarity=0.624 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001031 981 TKPCKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 981 ~kP~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
..+|+||.|||.-|||||+|.-.+-..+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 4568999999999999999998876544
No 419
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.65 E-value=0.043 Score=61.01 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=28.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc
Q 001031 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI 1020 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L 1020 (1183)
|+|+|+||+|||++|+.++..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999987 566777765433
No 420
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.65 E-value=0.26 Score=58.42 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=64.6
Q ss_pred CeEEEEeCCccccc----CCCC--cchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEec--CC--------------CCC
Q 001031 1044 PSVVFVDEVDSMLG----RREN--PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT--NR--------------PFD 1101 (1183)
Q Consensus 1044 PsILfIDEID~Ll~----~r~~--~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTT--N~--------------p~~ 1101 (1183)
|-++.||++..|+. .+.. +.... .-.+..-++..+.+-.. ...+++++. .. ...
T Consensus 316 kVLvaID~~n~l~~~T~~k~~~~~~v~P~-dl~li~~~~~~i~ndwt---~g~vi~a~s~~~~~~a~~h~gv~~y~pr~l 391 (461)
T KOG3928|consen 316 KVLVAIDNFNSLFTVTAYKSEDNKPVTPL-DLTLIHLLRDIISNDWT---FGSVIMAISGVTTPSAFGHLGVAPYVPRKL 391 (461)
T ss_pred cEEEEEcCcchheeeeeeeccccCcCCch-hhhHHHHHHHHHhcccc---cceEEEEecccccchhccccccccCCchHh
Confidence 55888999999997 2211 11111 12333444444443322 223333333 11 123
Q ss_pred CcHHHHh---ccCcEEEecCCCHHHHHHHHHHHHhhc----cCCChhhHHHHHHHcCCCcHHHHHHHHH
Q 001031 1102 LDEAVVR---RLPRRLMVNLPDAPNREKIIRVILAKE----ELASDVDLEGIANMADGYSGSDLKNLCV 1163 (1183)
Q Consensus 1102 Ld~aLlr---RFd~vI~I~lPd~eeR~eILk~iL~k~----~l~~didl~~LA~~TeGySg~DL~~L~~ 1163 (1183)
+++.... -| ..|+++..+.+|-..++.+|+++. ....+..++++--+. +..++-++.+|.
T Consensus 392 lg~egfe~lqpf-~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 392 LGEEGFEALQPF-VPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred cCccchhhccCc-CccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 3443333 34 357888889999999999998763 233455677777777 456777777763
No 421
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.64 E-value=0.0094 Score=62.60 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=29.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~ 1019 (1183)
+-|+|.|+||+|||++|++++..++.+++.++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~ 37 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDS 37 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccH
Confidence 45899999999999999999999988777665443
No 422
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.60 E-value=0.034 Score=64.84 Aligned_cols=69 Identities=23% Similarity=0.361 Sum_probs=47.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEe-cCcccc----c-------c--ccchHHHHHHHHHHHhccCCeEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGA--NFINIS-MSSITS----K-------W--FGEGEKYVKAVFSLASKIAPSVVF 1048 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~--pfi~I~-~s~L~s----~-------~--~GesE~~Ir~lF~~A~k~~PsILf 1048 (1183)
.+||+.|++|+|||+++++++..... .++.+. ..++.- . . .+...-....++..+.+..|.+|+
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~Ii 240 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRII 240 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEE
Confidence 57999999999999999999988742 333331 112210 0 0 011122456788888899999999
Q ss_pred EeCCc
Q 001031 1049 VDEVD 1053 (1183)
Q Consensus 1049 IDEID 1053 (1183)
+.|+-
T Consensus 241 vGEiR 245 (332)
T PRK13900 241 VGELR 245 (332)
T ss_pred EEecC
Confidence 99994
No 423
>PRK14528 adenylate kinase; Provisional
Probab=95.58 E-value=0.012 Score=62.87 Aligned_cols=31 Identities=35% Similarity=0.604 Sum_probs=27.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
+.++|.||||+|||++++.++..++++++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3689999999999999999999999887654
No 424
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.57 E-value=0.012 Score=61.59 Aligned_cols=31 Identities=26% Similarity=0.495 Sum_probs=26.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
.-|+|.||||+|||++++.++..+|+.++..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 3589999999999999999999998776544
No 425
>PRK02496 adk adenylate kinase; Provisional
Probab=95.56 E-value=0.011 Score=62.29 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
.++|.||||+|||++++.||..++++++.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 589999999999999999999999887765
No 426
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.56 E-value=0.03 Score=65.50 Aligned_cols=23 Identities=52% Similarity=0.642 Sum_probs=21.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001031 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
-+++.|.||||||.||-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 427
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.55 E-value=0.047 Score=59.33 Aligned_cols=23 Identities=52% Similarity=0.716 Sum_probs=21.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001031 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
=|+|+|+||+|||++|+.+|+.+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 38999999999999999999998
No 428
>PRK04328 hypothetical protein; Provisional
Probab=95.54 E-value=0.11 Score=58.19 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=25.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001031 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINIS 1016 (1183)
Q Consensus 982 kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~ 1016 (1183)
.+...+||+|+||+|||.|+..++.+. |-+.+.++
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 344569999999999999998876542 44555544
No 429
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.53 E-value=0.13 Score=55.77 Aligned_cols=129 Identities=23% Similarity=0.346 Sum_probs=64.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc--------------c-ccc----c-chHHHHHHHHHHHh
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT--------------S-KWF----G-EGEKYVKAVFSLAS 1040 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~--------------s-~~~----G-esE~~Ir~lF~~A~ 1040 (1183)
|+-++|.||+|+|||+.+..+|..+ +..+-.+.+.... + .+. . .....+++.+..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 3568999999999999888888766 4444333332211 0 000 1 12233445555555
Q ss_pred ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHH--hcc-CcEEEec
Q 001031 1041 KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVV--RRL-PRRLMVN 1117 (1183)
Q Consensus 1041 k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLl--rRF-d~vI~I~ 1117 (1183)
...-.+||||-..+. +...+.+..+ ..++..+. +...++|+.++...+.+..... +.+ -..+.+.
T Consensus 81 ~~~~D~vlIDT~Gr~------~~d~~~~~el-~~~~~~~~-----~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlT 148 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS------PRDEELLEEL-KKLLEALN-----PDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILT 148 (196)
T ss_dssp HTTSSEEEEEE-SSS------STHHHHHHHH-HHHHHHHS-----SSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEE
T ss_pred hcCCCEEEEecCCcc------hhhHHHHHHH-HHHhhhcC-----CccceEEEecccChHHHHHHHHHhhcccCceEEEE
Confidence 545579999987532 2222222222 22333331 2244566666655555553222 223 1234566
Q ss_pred CCCHHHH
Q 001031 1118 LPDAPNR 1124 (1183)
Q Consensus 1118 lPd~eeR 1124 (1183)
..|...+
T Consensus 149 KlDet~~ 155 (196)
T PF00448_consen 149 KLDETAR 155 (196)
T ss_dssp STTSSST
T ss_pred eecCCCC
Confidence 6665444
No 430
>PRK13946 shikimate kinase; Provisional
Probab=95.53 E-value=0.011 Score=62.67 Aligned_cols=32 Identities=28% Similarity=0.568 Sum_probs=29.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
+.|+|.|.+|+|||++++.+|+.+|++|+..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 57999999999999999999999999998766
No 431
>PRK06547 hypothetical protein; Provisional
Probab=95.50 E-value=0.014 Score=61.84 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=29.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
++.-|+|.|++|+|||++|+.++..++.+++.++
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 3467899999999999999999999988877654
No 432
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.50 E-value=0.033 Score=57.33 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=27.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001031 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~ 1019 (1183)
++|.|+||+|||++|+.++..+ +...+.++...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~ 37 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN 37 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 7899999999999999999998 66677776443
No 433
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.50 E-value=0.054 Score=57.33 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
+...++|+||+||||++|.+++|.-.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 44569999999999999999999754
No 434
>PLN02200 adenylate kinase family protein
Probab=95.48 E-value=0.015 Score=64.62 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=30.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~ 1021 (1183)
.+.-|+|.|+||+|||++|+.||..+|+.+ +++.+++
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdll 78 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDLL 78 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHHH
Confidence 345689999999999999999999998765 4555544
No 435
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.47 E-value=0.014 Score=61.52 Aligned_cols=33 Identities=27% Similarity=0.608 Sum_probs=29.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~ 1017 (1183)
..|+|.|++|+|||++++.+|..++++++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 469999999999999999999999999887663
No 436
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.44 E-value=0.37 Score=54.81 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s 1018 (1183)
+++-++|.||+|+|||+++..+|..+ |..+..+++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 44678999999999999999998776 5566555544
No 437
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.43 E-value=0.013 Score=63.50 Aligned_cols=29 Identities=41% Similarity=0.748 Sum_probs=26.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 987 ILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
|+|.||||+|||++|+.||..+|++++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 89999999999999999999999877664
No 438
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.43 E-value=0.035 Score=59.12 Aligned_cols=69 Identities=30% Similarity=0.498 Sum_probs=45.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecC-cccc---ccc----------cchHHHHHHHHHHHhccCCeEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS-SITS---KWF----------GEGEKYVKAVFSLASKIAPSVVF 1048 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg--~pfi~I~~s-~L~s---~~~----------GesE~~Ir~lF~~A~k~~PsILf 1048 (1183)
..++|.||+|+|||+++++++..+. ...+.+... ++.. .+. +........++..+.+..|.+|+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~ 105 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRII 105 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEE
Confidence 5799999999999999999998763 222322211 1100 000 11123456677778888999999
Q ss_pred EeCCc
Q 001031 1049 VDEVD 1053 (1183)
Q Consensus 1049 IDEID 1053 (1183)
+.||-
T Consensus 106 igEir 110 (186)
T cd01130 106 VGEVR 110 (186)
T ss_pred EEccC
Confidence 99994
No 439
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.42 E-value=0.014 Score=63.44 Aligned_cols=30 Identities=40% Similarity=0.699 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
.|+++||||+|||++|+.||..++++++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 489999999999999999999999877664
No 440
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=95.42 E-value=0.034 Score=70.84 Aligned_cols=80 Identities=26% Similarity=0.449 Sum_probs=66.3
Q ss_pred cceeEEcc---CCccceeecCCCCCccceEEEEeecCCcceEEEEEecCCceEEEcCeecCCCceEEeeCCCEEEEccCC
Q 001031 151 GAVFTVGH---NRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDELVFSPSG 227 (1183)
Q Consensus 151 ~~~~t~G~---~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vNg~~~~k~~~~~L~~gDev~f~~~~ 227 (1183)
.-+=+||| +..-|+.|.++.|---||.|++. +|.-|+.|+-...--| |||||.|.- ...|+.||.|+|+ +
T Consensus 476 eG~TrVG~~~a~~~~DI~LsG~~I~~qHC~i~~~--~g~~~vtl~p~e~aet-yVNGk~v~e--p~qL~~GdRiilG--~ 548 (1221)
T KOG0245|consen 476 EGETRVGREDASSRQDIVLSGQLIREQHCSIRNE--GGNDVVTLEPCEDAET-YVNGKLVTE--PTQLRSGDRIILG--G 548 (1221)
T ss_pred cCceecCCCCcccCCceEecchhhhhhceEEEec--CCCceEEeccCCccce-eEccEEcCC--cceeccCCEEEEc--C
Confidence 45668995 34559999999999999999986 4444888988877766 899999976 6789999999995 6
Q ss_pred CeeEEeeecC
Q 001031 228 KHSYIFQQLS 237 (1183)
Q Consensus 228 ~~ayifq~l~ 237 (1183)
+|.|.|-+..
T Consensus 549 ~H~frfn~P~ 558 (1221)
T KOG0245|consen 549 NHVFRFNHPE 558 (1221)
T ss_pred ceeEEecCHH
Confidence 8999998873
No 441
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.40 E-value=0.024 Score=65.29 Aligned_cols=36 Identities=28% Similarity=0.546 Sum_probs=31.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 981 ~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
..+...|+|.|++|+|||++++.+|..+|++|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 445678999999999999999999999999999544
No 442
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.32 E-value=0.35 Score=56.31 Aligned_cols=35 Identities=26% Similarity=0.238 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~ 1017 (1183)
++.-++|.||+|+|||+++..+|..+ +..+..+++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 34568999999999999999999876 455555554
No 443
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.29 E-value=0.14 Score=55.79 Aligned_cols=36 Identities=28% Similarity=0.396 Sum_probs=27.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s 1018 (1183)
+..-++|.|+||+|||+++..++... +-+++.++..
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34568999999999999999887553 6666666653
No 444
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.25 E-value=0.086 Score=55.61 Aligned_cols=73 Identities=25% Similarity=0.409 Sum_probs=41.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh-------------CCcEEEEecCccc-----------ccc-------c-c-------
Q 001031 986 GILLFGPPGTGKTMLAKAVATEA-------------GANFINISMSSIT-----------SKW-------F-G------- 1026 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eL-------------g~pfi~I~~s~L~-----------s~~-------~-G------- 1026 (1183)
-++|+||+|+|||+++..++..+ +..++.+++..-. ..+ + .
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 113 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCI 113 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccc
Confidence 48999999999999999887654 2356666653310 000 0 0
Q ss_pred ----------chHHHHHHHHHHHhc-cCCeEEEEeCCcccccC
Q 001031 1027 ----------EGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGR 1058 (1183)
Q Consensus 1027 ----------esE~~Ir~lF~~A~k-~~PsILfIDEID~Ll~~ 1058 (1183)
.....+..+...+.. ..+.+|+||.+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 114 RLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 012234455566666 67899999999999765
No 445
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.20 E-value=0.015 Score=56.51 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=21.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 001031 987 ILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
|+|.|+||+|||++|+.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 446
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.19 E-value=0.017 Score=60.61 Aligned_cols=29 Identities=34% Similarity=0.615 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~ 1014 (1183)
-|-+.||||||||++|+.||..+|.+++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceee
Confidence 36789999999999999999999999876
No 447
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.17 E-value=0.085 Score=54.99 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=42.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecCccc--------cccccc-----hHHHHHHHHHHHhccCCeEE
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSIT--------SKWFGE-----GEKYVKAVFSLASKIAPSVV 1047 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eLg~--pfi~I~~s~L~--------s~~~Ge-----sE~~Ir~lF~~A~k~~PsIL 1047 (1183)
+...+.|.||+|+|||+|.+.|+..... --+.++...+. ...++. .-..-+-.+..|--..|.||
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLL 104 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEE
Confidence 4456999999999999999999876521 11222221111 000110 01122334455566789999
Q ss_pred EEeCCc
Q 001031 1048 FVDEVD 1053 (1183)
Q Consensus 1048 fIDEID 1053 (1183)
++||--
T Consensus 105 llDEP~ 110 (163)
T cd03216 105 ILDEPT 110 (163)
T ss_pred EEECCC
Confidence 999985
No 448
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.14 E-value=0.041 Score=59.74 Aligned_cols=112 Identities=18% Similarity=0.260 Sum_probs=60.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcch
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~ 1064 (1183)
.-++|.|+.|+|||++.+.|..+. +.-..... .. ...+..+ .. --|+.|||++.+. ...
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~-----~~-kd~~~~l---~~---~~iveldEl~~~~-----k~~ 111 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDF-----DD-KDFLEQL---QG---KWIVELDELDGLS-----KKD 111 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHh----ccCccccC-----CC-cHHHHHH---HH---hHheeHHHHhhcc-----hhh
Confidence 458999999999999999996651 11111110 10 1111111 11 1488999999873 122
Q ss_pred HHHHHHHHHHHHHhhcCC----cccCCCCEEEEEecCCCCCCc-HHHHhccCcEEEecC
Q 001031 1065 HEAMRKMKNEFMVNWDGL----RTKDKERVLVLAATNRPFDLD-EAVVRRLPRRLMVNL 1118 (1183)
Q Consensus 1065 ~e~l~~il~~LL~~Ldgl----~~k~~~~VlVIaTTN~p~~Ld-~aLlrRFd~vI~I~l 1118 (1183)
.+.+..++..-...++.. ...-++...+|||||..+-|. +.--||| ..+.+..
T Consensus 112 ~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf-~~v~v~~ 169 (198)
T PF05272_consen 112 VEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF-WPVEVSK 169 (198)
T ss_pred HHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE-EEEEEcC
Confidence 233333332222222111 112246788999999987554 3455688 5555543
No 449
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=95.11 E-value=0.066 Score=57.78 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
-|.|+|++|+|||++++.++..+|++++..+
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~~D 33 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDAD 33 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEeeCc
Confidence 4899999999999999999998898887543
No 450
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.08 E-value=0.082 Score=55.15 Aligned_cols=32 Identities=34% Similarity=0.467 Sum_probs=26.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001031 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s 1018 (1183)
+++.|+||+|||+++..+|..+ +..+..+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 7899999999999999998775 6667666654
No 451
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.08 E-value=0.048 Score=65.97 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=36.5
Q ss_pred cccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcC
Q 001031 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFS 519 (1183)
Q Consensus 449 ~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~ 519 (1183)
-..|||+|-. .+..+.++..|-.+ + .+-....+.++|.||+| .....|++|+|+++.
T Consensus 117 ~~~tfd~fv~--g~~n~~a~~~~~~~-------~---~~~~~~~~~l~l~G~~G--~GKThL~~ai~~~~~ 173 (450)
T PRK00149 117 PKYTFDNFVV--GKSNRLAHAAALAV-------A---ENPGKAYNPLFIYGGVG--LGKTHLLHAIGNYIL 173 (450)
T ss_pred CCCccccccc--CCCcHHHHHHHHHH-------H---hCcCccCCeEEEECCCC--CCHHHHHHHHHHHHH
Confidence 4458999843 45555444333321 1 11112335599999999 799999999998863
No 452
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.07 E-value=0.34 Score=57.90 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=44.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc-------ccc---------ccchHHHHHHHHHHHhc-cC
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-------SKW---------FGEGEKYVKAVFSLASK-IA 1043 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~-------s~~---------~GesE~~Ir~lF~~A~k-~~ 1043 (1183)
++.|+|.||+|+|||+++..||..+ +..+..+++.... ..| .......+......+.. ..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 3679999999999999999999876 4455555543321 000 01223344444444432 23
Q ss_pred CeEEEEeCCccc
Q 001031 1044 PSVVFVDEVDSM 1055 (1183)
Q Consensus 1044 PsILfIDEID~L 1055 (1183)
-.+||||-..+.
T Consensus 321 ~DvVLIDTaGRs 332 (436)
T PRK11889 321 VDYILIDTAGKN 332 (436)
T ss_pred CCEEEEeCcccc
Confidence 579999987654
No 453
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.05 E-value=0.12 Score=58.92 Aligned_cols=33 Identities=33% Similarity=0.531 Sum_probs=27.2
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001031 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1183)
Q Consensus 492 s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilD 526 (1183)
.+-+||.||+| ....+||+++|+.++.++.+++
T Consensus 30 ~~~~ll~Gp~G--~GKT~la~~ia~~~~~~~~~~~ 62 (305)
T TIGR00635 30 LDHLLLYGPPG--LGKTTLAHIIANEMGVNLKITS 62 (305)
T ss_pred CCeEEEECCCC--CCHHHHHHHHHHHhCCCEEEec
Confidence 35589999999 8999999999999887655443
No 454
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.16 Score=60.23 Aligned_cols=96 Identities=22% Similarity=0.366 Sum_probs=65.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecCcccc------c--------cccchHHHHHHHHHHHhccCCeE
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSITS------K--------WFGEGEKYVKAVFSLASKIAPSV 1046 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL--g~pfi~I~~s~L~s------~--------~~GesE~~Ir~lF~~A~k~~PsI 1046 (1183)
|..-+||-|.||.|||+|.-.++..+ ..+++++...+-.. . ..--.|-.+..+...+...+|.+
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~l 171 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDL 171 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCE
Confidence 44559999999999999888777665 33788888755211 1 11123556788888888999999
Q ss_pred EEEeCCcccccCC--CCcchHHHHHHHHHHHHHh
Q 001031 1047 VFVDEVDSMLGRR--ENPGEHEAMRKMKNEFMVN 1078 (1183)
Q Consensus 1047 LfIDEID~Ll~~r--~~~~~~e~l~~il~~LL~~ 1078 (1183)
++||-|..++... ..++.-...+....+|+..
T Consensus 172 vVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~ 205 (456)
T COG1066 172 VVIDSIQTLYSEEITSAPGSVSQVREVAAELMRL 205 (456)
T ss_pred EEEeccceeecccccCCCCcHHHHHHHHHHHHHH
Confidence 9999999998544 2234333445555555543
No 455
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.04 E-value=0.053 Score=61.90 Aligned_cols=70 Identities=24% Similarity=0.410 Sum_probs=47.8
Q ss_pred ce-EEEEcCCCChHHHHHHHHHHHhC----CcEEEEecC-c---------cccccccchHHHHHHHHHHHhccCCeEEEE
Q 001031 985 KG-ILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-S---------ITSKWFGEGEKYVKAVFSLASKIAPSVVFV 1049 (1183)
Q Consensus 985 ~g-VLL~GPPGTGKT~LAkAIA~eLg----~pfi~I~~s-~---------L~s~~~GesE~~Ir~lF~~A~k~~PsILfI 1049 (1183)
+| ||++||.|+|||+...++-.+.+ .+++.+.-+ + +...-+|.........+..|-+..|.||++
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlv 204 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILV 204 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEE
Confidence 45 89999999999998888887774 344444322 1 111223444445566677778889999999
Q ss_pred eCCcc
Q 001031 1050 DEVDS 1054 (1183)
Q Consensus 1050 DEID~ 1054 (1183)
-|+-.
T Consensus 205 GEmRD 209 (353)
T COG2805 205 GEMRD 209 (353)
T ss_pred ecccc
Confidence 99953
No 456
>PRK14527 adenylate kinase; Provisional
Probab=95.00 E-value=0.021 Score=60.88 Aligned_cols=31 Identities=35% Similarity=0.655 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
.-|+++||||+|||++|+.+|..+++..+..
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 5699999999999999999999998876544
No 457
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=94.99 E-value=0.07 Score=63.54 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
..++|.||+|+|||+|++.|++...
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 4699999999999999999999863
No 458
>PRK04040 adenylate kinase; Provisional
Probab=94.98 E-value=0.025 Score=60.68 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=26.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCcEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA--GANFIN 1014 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL--g~pfi~ 1014 (1183)
.-|+|+|+||+|||++++.++..+ ++.++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~ 34 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIVN 34 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEEe
Confidence 568999999999999999999999 565543
No 459
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.98 E-value=0.037 Score=63.77 Aligned_cols=70 Identities=23% Similarity=0.406 Sum_probs=45.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEe-cCcccc---cc----c-----cchHHHHHHHHHHHhccCCeEEE
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEAGA--NFINIS-MSSITS---KW----F-----GEGEKYVKAVFSLASKIAPSVVF 1048 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eLg~--pfi~I~-~s~L~s---~~----~-----GesE~~Ir~lF~~A~k~~PsILf 1048 (1183)
...++|.||+|+|||+|+++++..+.. .++.+. ..++.- .+ . +...-....++..+.+..|.+|+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii 223 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRII 223 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEE
Confidence 368999999999999999999987632 222222 111110 00 0 11122456677778889999999
Q ss_pred EeCCc
Q 001031 1049 VDEVD 1053 (1183)
Q Consensus 1049 IDEID 1053 (1183)
+||+-
T Consensus 224 ~gE~r 228 (308)
T TIGR02788 224 LGELR 228 (308)
T ss_pred EeccC
Confidence 99995
No 460
>PRK04182 cytidylate kinase; Provisional
Probab=94.97 E-value=0.023 Score=58.98 Aligned_cols=29 Identities=38% Similarity=0.686 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~ 1014 (1183)
.|+|.|++|+|||++++.+|..++++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 48999999999999999999999998875
No 461
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.97 E-value=0.2 Score=54.66 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=26.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001031 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1183)
Q Consensus 982 kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~ 1017 (1183)
.+...++|+|+||+|||+|+..++... +-+.+.++.
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 344669999999999999999876432 445555543
No 462
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.95 E-value=0.048 Score=63.39 Aligned_cols=69 Identities=23% Similarity=0.366 Sum_probs=46.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe-cCcccc---c---cccchHHHHHHHHHHHhccCCeEEEEeCC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINIS-MSSITS---K---WFGEGEKYVKAVFSLASKIAPSVVFVDEV 1052 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL-----g~pfi~I~-~s~L~s---~---~~GesE~~Ir~lF~~A~k~~PsILfIDEI 1052 (1183)
.++|+.|++|+|||+++++++... +..++.+. ..++.- . +.....-....++..+.+..|.+|++.||
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 479999999999999999999876 22333332 122211 0 11111223567778888999999999999
Q ss_pred c
Q 001031 1053 D 1053 (1183)
Q Consensus 1053 D 1053 (1183)
-
T Consensus 225 R 225 (323)
T PRK13833 225 R 225 (323)
T ss_pred C
Confidence 4
No 463
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.95 E-value=0.26 Score=62.76 Aligned_cols=158 Identities=21% Similarity=0.291 Sum_probs=87.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh--CCcEEEEecCccccc--------------c---ccc-------------hHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA--GANFINISMSSITSK--------------W---FGE-------------GEKYV 1032 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL--g~pfi~I~~s~L~s~--------------~---~Ge-------------sE~~I 1032 (1183)
+=+||.-|.|.|||+|+...+..+ +..+..+++.+-.++ + .++ .+..+
T Consensus 38 RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~ 117 (894)
T COG2909 38 RLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLL 117 (894)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHH
Confidence 569999999999999999997533 444444444321100 0 011 12245
Q ss_pred HHHHHH-HhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCC-CC-CCcHHHHhc
Q 001031 1033 KAVFSL-ASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-PF-DLDEAVVRR 1109 (1183)
Q Consensus 1033 r~lF~~-A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~-p~-~Ld~aLlrR 1109 (1183)
..+|.+ +....|.++||||.+.+- ++.-++.+ +-|+.. .+.++.+|.+|.. |. .+..--++
T Consensus 118 ~~L~~Ela~~~~pl~LVlDDyHli~----~~~l~~~l----~fLl~~-------~P~~l~lvv~SR~rP~l~la~lRlr- 181 (894)
T COG2909 118 SSLLNELASYEGPLYLVLDDYHLIS----DPALHEAL----RFLLKH-------APENLTLVVTSRSRPQLGLARLRLR- 181 (894)
T ss_pred HHHHHHHHhhcCceEEEeccccccC----cccHHHHH----HHHHHh-------CCCCeEEEEEeccCCCCcccceeeh-
Confidence 555553 456689999999999872 23333333 333333 2366788888743 32 22211111
Q ss_pred cCcEEEec----CCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcH-HHHHHH
Q 001031 1110 LPRRLMVN----LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG-SDLKNL 1161 (1183)
Q Consensus 1110 Fd~vI~I~----lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg-~DL~~L 1161 (1183)
+..++|. .-+.+|-.++|+...... .+..+++.|-..++|... -.|..|
T Consensus 182 -~~llEi~~~~Lrf~~eE~~~fl~~~~~l~--Ld~~~~~~L~~~teGW~~al~L~aL 235 (894)
T COG2909 182 -DELLEIGSEELRFDTEEAAAFLNDRGSLP--LDAADLKALYDRTEGWAAALQLIAL 235 (894)
T ss_pred -hhHHhcChHhhcCChHHHHHHHHHcCCCC--CChHHHHHHHhhcccHHHHHHHHHH
Confidence 0111221 125777778777654221 356678888888888443 344444
No 464
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.94 E-value=0.07 Score=57.37 Aligned_cols=40 Identities=28% Similarity=0.482 Sum_probs=30.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecCcccc
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITS 1022 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL-g~pfi~I~~s~L~s 1022 (1183)
.|.-++|.|+||+|||+++..+...+ +..++.++..++..
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 34679999999999999999999988 77888888766543
No 465
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.94 E-value=0.05 Score=63.20 Aligned_cols=69 Identities=25% Similarity=0.426 Sum_probs=46.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe-cCccc---ccc---ccchHHHHHHHHHHHhccCCeEEEEeCC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA-----GANFINIS-MSSIT---SKW---FGEGEKYVKAVFSLASKIAPSVVFVDEV 1052 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL-----g~pfi~I~-~s~L~---s~~---~GesE~~Ir~lF~~A~k~~PsILfIDEI 1052 (1183)
.++|+.|++|+|||+++++++... ...++.+. ..++. ..+ ....+-....++..+.+..|..|++.|+
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGEi 228 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEV 228 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 579999999999999999999864 12233322 11221 011 1111224667888888999999999999
Q ss_pred c
Q 001031 1053 D 1053 (1183)
Q Consensus 1053 D 1053 (1183)
-
T Consensus 229 R 229 (319)
T PRK13894 229 R 229 (319)
T ss_pred C
Confidence 4
No 466
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.89 E-value=0.035 Score=65.07 Aligned_cols=69 Identities=22% Similarity=0.448 Sum_probs=46.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEe-cCcccc---c-----c----ccchHHHHHHHHHHHhccCCeEEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGA--NFINIS-MSSITS---K-----W----FGEGEKYVKAVFSLASKIAPSVVFV 1049 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~--pfi~I~-~s~L~s---~-----~----~GesE~~Ir~lF~~A~k~~PsILfI 1049 (1183)
.++|+.||+|+|||+++++++..... .++.+. ..++.- . + .+...-....++..+.+..|.+|++
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~Iiv 242 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRILL 242 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeEEE
Confidence 57999999999999999999988732 233322 111110 0 0 0111224567788888999999999
Q ss_pred eCCc
Q 001031 1050 DEVD 1053 (1183)
Q Consensus 1050 DEID 1053 (1183)
.|+-
T Consensus 243 GEiR 246 (344)
T PRK13851 243 GEMR 246 (344)
T ss_pred EeeC
Confidence 9994
No 467
>PLN02674 adenylate kinase
Probab=94.88 E-value=0.025 Score=63.22 Aligned_cols=33 Identities=30% Similarity=0.548 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
+...|+|.||||+||+++++.||..++++++..
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~ 62 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHLAT 62 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcEEch
Confidence 346799999999999999999999998766544
No 468
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.87 E-value=0.16 Score=65.24 Aligned_cols=75 Identities=23% Similarity=0.267 Sum_probs=47.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH---hCCcEEEEecCcccc----------------ccccchHHHHHHHHHHHhccC
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATE---AGANFINISMSSITS----------------KWFGEGEKYVKAVFSLASKIA 1043 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~e---Lg~pfi~I~~s~L~s----------------~~~GesE~~Ir~lF~~A~k~~ 1043 (1183)
+..-++|+||+|+|||+|+..++.. .|-..+.++...-.. ......+..+..+-.......
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~ 138 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGA 138 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCC
Confidence 3355899999999999999765443 366666666543111 011122333333334445567
Q ss_pred CeEEEEeCCccccc
Q 001031 1044 PSVVFVDEVDSMLG 1057 (1183)
Q Consensus 1044 PsILfIDEID~Ll~ 1057 (1183)
+.+|+||-|..++.
T Consensus 139 ~~LVVIDSI~aL~~ 152 (790)
T PRK09519 139 LDIVVIDSVAALVP 152 (790)
T ss_pred CeEEEEcchhhhcc
Confidence 89999999999875
No 469
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.85 E-value=0.024 Score=57.97 Aligned_cols=32 Identities=38% Similarity=0.644 Sum_probs=25.6
Q ss_pred EEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001031 989 LFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1183)
Q Consensus 989 L~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s 1022 (1183)
|.||||+|||++|+.||..+++.++ +..+++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~i--s~~~llr 32 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHI--SVGDLLR 32 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEE--EHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCccee--chHHHHH
Confidence 6899999999999999999987554 4445443
No 470
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.83 E-value=0.14 Score=62.73 Aligned_cols=74 Identities=22% Similarity=0.279 Sum_probs=51.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc------ccc----------------------chHHH
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK------WFG----------------------EGEKY 1031 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~------~~G----------------------esE~~ 1031 (1183)
+...+||.||||+|||+|+..++... |-+.+++...+-... .+| ..+..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~ 341 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDH 341 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHH
Confidence 44569999999999999999887755 556666654331000 000 12456
Q ss_pred HHHHHHHHhccCCeEEEEeCCcccc
Q 001031 1032 VKAVFSLASKIAPSVVFVDEVDSML 1056 (1183)
Q Consensus 1032 Ir~lF~~A~k~~PsILfIDEID~Ll 1056 (1183)
+..+........|.+|+||-+..+.
T Consensus 342 ~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 342 LQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 6777777888889999999998774
No 471
>PRK01184 hypothetical protein; Provisional
Probab=94.81 E-value=0.025 Score=59.57 Aligned_cols=29 Identities=34% Similarity=0.535 Sum_probs=25.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
-|+|+|+||+||||+++ +++++|++++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 48999999999999987 788999888665
No 472
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.79 E-value=0.027 Score=58.03 Aligned_cols=29 Identities=41% Similarity=0.702 Sum_probs=26.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 987 ILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
|.|+|++|+|||++|+.++..++++++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999987654
No 473
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.78 E-value=0.15 Score=58.92 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=27.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 1019 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---------g~pfi~I~~s~ 1019 (1183)
.-++|+||||+|||.|+..+|... +..+++++...
T Consensus 103 ~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 103 SITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred cEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 458999999999999999998653 33677777544
No 474
>PRK06696 uridine kinase; Validated
Probab=94.78 E-value=0.032 Score=61.04 Aligned_cols=37 Identities=27% Similarity=0.378 Sum_probs=31.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~ 1021 (1183)
.-|.|.|++|+|||+||+.|+..+ |.+++.+.+.++.
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 569999999999999999999998 6778877766654
No 475
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.78 E-value=0.38 Score=51.28 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=21.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
+..-+.|.||.|+|||+|.++++..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3456899999999999999999643
No 476
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.78 E-value=0.13 Score=65.86 Aligned_cols=70 Identities=24% Similarity=0.318 Sum_probs=40.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---C--CcEEEEecCc----cccccccchHHHHHHHHHHH----------hccCCeE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEA---G--ANFINISMSS----ITSKWFGEGEKYVKAVFSLA----------SKIAPSV 1046 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eL---g--~pfi~I~~s~----L~s~~~GesE~~Ir~lF~~A----------~k~~PsI 1046 (1183)
-++|.|+||||||+++++|...+ + .+++-+.... -+....|.....+..++... ......+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999987655 3 3444333211 11111222223344444321 1134579
Q ss_pred EEEeCCccc
Q 001031 1047 VFVDEVDSM 1055 (1183)
Q Consensus 1047 LfIDEID~L 1055 (1183)
|+|||+..+
T Consensus 420 lIvDEaSMv 428 (720)
T TIGR01448 420 LIVDESSMM 428 (720)
T ss_pred EEEeccccC
Confidence 999999765
No 477
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.75 E-value=0.13 Score=52.87 Aligned_cols=26 Identities=35% Similarity=0.532 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
+...+.|.|++|+|||+|+++|+..+
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44568999999999999999999876
No 478
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.74 E-value=0.031 Score=66.38 Aligned_cols=45 Identities=36% Similarity=0.647 Sum_probs=38.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
+.+++|+.-.++.++.|.+. ..|||+.||||.|||++|+|+|..+
T Consensus 243 k~~ledY~L~dkl~eRL~er-------------------aeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 243 KLSLEDYGLSDKLKERLEER-------------------AEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred EechhhcCCCHHHHHHHHhh-------------------hcceEEecCCCCChhHHHHHHHHHH
Confidence 35678888888988888762 2589999999999999999999887
No 479
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.71 E-value=0.022 Score=60.29 Aligned_cols=30 Identities=37% Similarity=0.594 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
.|+|+|.||+|||++++.++ .+|.+++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 48999999999999999999 9999888765
No 480
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.66 E-value=0.029 Score=58.01 Aligned_cols=27 Identities=41% Similarity=0.635 Sum_probs=21.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001031 987 ILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eLg~pfi~ 1014 (1183)
|.|+|+||||||+|+++|+.. |++++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~ 28 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVP 28 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE-
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEe
Confidence 789999999999999999998 888763
No 481
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=94.64 E-value=0.034 Score=60.88 Aligned_cols=35 Identities=43% Similarity=0.610 Sum_probs=27.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001031 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~ 1021 (1183)
++|+||+|||||.+|-++|+..|.|++..+.-...
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y 38 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCY 38 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceecc
Confidence 79999999999999999999999999999865443
No 482
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.63 E-value=0.51 Score=52.15 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 001031 987 ILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~e 1007 (1183)
-||+||||+|||+|+..+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999988764
No 483
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.60 E-value=0.096 Score=61.80 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=42.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC------CcEEEEecC-ccccc------------cccchHHHHHHHHHHHhccCCe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG------ANFINISMS-SITSK------------WFGEGEKYVKAVFSLASKIAPS 1045 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg------~pfi~I~~s-~L~s~------------~~GesE~~Ir~lF~~A~k~~Ps 1045 (1183)
.-|+++||+|+|||+++++++..+. ..++.+.-+ ++.-. ..+............+-+..|.
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd 214 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKPH 214 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCCC
Confidence 4599999999999999999998762 234333211 11100 0010011233444557778999
Q ss_pred EEEEeCCc
Q 001031 1046 VVFVDEVD 1053 (1183)
Q Consensus 1046 ILfIDEID 1053 (1183)
+|+|.|+.
T Consensus 215 ~i~vGEiR 222 (358)
T TIGR02524 215 AILVGEAR 222 (358)
T ss_pred EEeeeeeC
Confidence 99999985
No 484
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.60 E-value=0.33 Score=58.35 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=25.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 1018 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL----g~pfi~I~~s 1018 (1183)
.-++|.||+|+|||+++..+|..+ |..+..+++.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~D 261 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTD 261 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEeccc
Confidence 458999999999999999998654 4445445443
No 485
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.58 E-value=0.19 Score=57.85 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 1019 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---------g~pfi~I~~s~ 1019 (1183)
.-++|+||||+|||+|+..+|... +...++++...
T Consensus 96 ~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 96 AITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 447999999999999999988663 23677777644
No 486
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.57 E-value=0.027 Score=60.15 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=17.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHh
Q 001031 987 ILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
.++.||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998766665554
No 487
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.57 E-value=0.089 Score=59.22 Aligned_cols=108 Identities=18% Similarity=0.253 Sum_probs=58.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCcccc-c--------cc------------------cchHH
Q 001031 987 ILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITS-K--------WF------------------GEGEK 1030 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eL---------g~pfi~I~~s~L~s-~--------~~------------------GesE~ 1030 (1183)
.=|+||||+|||.|+-.+|-.. +..+++++...-+. . +- .+...
T Consensus 41 tEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~ 120 (256)
T PF08423_consen 41 TEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLE 120 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHH
T ss_pred EEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHH
Confidence 5799999999999999887654 34478887543110 0 00 00111
Q ss_pred HHHHHHHHHhccCCeEEEEeCCcccccCCCCc-chHHHHHHHHHHHHHhhcCCcccCCCCEEEEEec
Q 001031 1031 YVKAVFSLASKIAPSVVFVDEVDSMLGRRENP-GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1096 (1183)
Q Consensus 1031 ~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~-~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTT 1096 (1183)
.+..+.......+-.+|+||-|-.++...... .....-...+..++..+..+..+ .++.||.|.
T Consensus 121 ~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~--~~iaVvvTN 185 (256)
T PF08423_consen 121 LLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARK--YNIAVVVTN 185 (256)
T ss_dssp HHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHH--TT-EEEEEE
T ss_pred HHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHh--CCceEEeec
Confidence 22222222334566899999999988533221 11111223445555555444433 456666554
No 488
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=94.55 E-value=0.31 Score=50.75 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVAT 1006 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~ 1006 (1183)
+.++|.||.|+|||.+.++++-
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999853
No 489
>PRK14526 adenylate kinase; Provisional
Probab=94.55 E-value=0.034 Score=60.81 Aligned_cols=29 Identities=34% Similarity=0.696 Sum_probs=26.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~ 1014 (1183)
.++|.||||+|||++++.||..++++++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 48999999999999999999999877654
No 490
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.55 E-value=0.19 Score=57.27 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=27.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----C-CcEEEEecCc
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA----G-ANFINISMSS 1019 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL----g-~pfi~I~~s~ 1019 (1183)
+..++|.||+|+|||+++..+|..+ + ..+..+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3569999999999999999998765 3 5666666544
No 491
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=94.55 E-value=0.032 Score=63.32 Aligned_cols=31 Identities=39% Similarity=0.491 Sum_probs=25.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcEEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA-GANFINI 1015 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL-g~pfi~I 1015 (1183)
.-|+|.|+||+|||++|+.|++.+ ++.++..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~ 34 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNR 34 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEec
Confidence 358999999999999999999998 6555543
No 492
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.54 E-value=0.069 Score=55.99 Aligned_cols=37 Identities=30% Similarity=0.380 Sum_probs=31.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT 1021 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~ 1021 (1183)
.-|+|+|.+|+|||+||+++.+.+ +.+++.++...+.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 458999999999999999999887 7888888876554
No 493
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.49 E-value=0.07 Score=60.63 Aligned_cols=69 Identities=26% Similarity=0.372 Sum_probs=37.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc--c-ccc-cchHHHHHHHHHHHhc---cCCeEEEEeCCccc
Q 001031 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT--S-KWF-GEGEKYVKAVFSLASK---IAPSVVFVDEVDSM 1055 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~--s-~~~-GesE~~Ir~lF~~A~k---~~PsILfIDEID~L 1055 (1183)
|+|+|-||+|||++|+.|+..+ +..++.++...+. . .|. ...|+.++..+..+-. ....||++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchH
Confidence 8999999999999999999876 6677777644332 1 121 2335555554433211 23479999998765
No 494
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.47 E-value=0.43 Score=57.60 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=46.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc--------------c-cccc-----chHHHHHHHHHHH
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT--------------S-KWFG-----EGEKYVKAVFSLA 1039 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~--------------s-~~~G-----esE~~Ir~lF~~A 1039 (1183)
++.-|+|+|++|+||||++..+|..+ |..+..+++.... . .++. .........+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 34669999999999999999999877 6666666653321 0 0010 1122233445555
Q ss_pred hccCCeEEEEeCCccc
Q 001031 1040 SKIAPSVVFVDEVDSM 1055 (1183)
Q Consensus 1040 ~k~~PsILfIDEID~L 1055 (1183)
+...-.+||||=..++
T Consensus 179 ~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 179 KKENFDIIIVDTSGRH 194 (429)
T ss_pred HhCCCCEEEEECCCCC
Confidence 5555679999977544
No 495
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.44 E-value=0.3 Score=53.95 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=20.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVAT 1006 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~ 1006 (1183)
..++|.||.|+|||++.+.++.
T Consensus 32 ~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 496
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.38 E-value=0.15 Score=60.19 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
+..+.|.|+.|||||+|.++|.+.+
T Consensus 22 ~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 22 GLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred CcEEEEEcCCCCChhHHHHHHHHHh
Confidence 3679999999999999999998887
No 497
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.37 E-value=0.14 Score=53.65 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=28.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS 1019 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~ 1019 (1183)
.-|.|.|+||+|||++|++++..+ +..+..++...
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 468999999999999999999887 44566666543
No 498
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.37 E-value=0.29 Score=53.35 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.1
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVA 1005 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA 1005 (1183)
.-++|.||.|+|||++.+.++
T Consensus 30 ~~~~l~G~n~~GKstll~~i~ 50 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIA 50 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999886
No 499
>PRK10263 DNA translocase FtsK; Provisional
Probab=94.35 E-value=0.36 Score=64.30 Aligned_cols=75 Identities=16% Similarity=0.279 Sum_probs=46.8
Q ss_pred eEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC--CCcHHHHhccCcEEEecCCCHH
Q 001031 1045 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDEAVVRRLPRRLMVNLPDAP 1122 (1183)
Q Consensus 1045 sILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~--~Ld~aLlrRFd~vI~I~lPd~e 1122 (1183)
-||+|||+..|+.... . .....+..+... . ....|.+|.+|.++. .|...++.-|..+|.|.+-+..
T Consensus 1142 IVVIIDE~AdLm~~~~----k-evE~lI~rLAqk---G---RAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~ 1210 (1355)
T PRK10263 1142 IVVLVDEFADLMMTVG----K-KVEELIARLAQK---A---RAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKI 1210 (1355)
T ss_pred EEEEEcChHHHHhhhh----H-HHHHHHHHHHHH---h---hhcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHH
Confidence 4899999987753211 1 111222222211 1 125688888888775 5666677789999999998877
Q ss_pred HHHHHHHH
Q 001031 1123 NREKIIRV 1130 (1183)
Q Consensus 1123 eR~eILk~ 1130 (1183)
+-..||..
T Consensus 1211 DSrtILd~ 1218 (1355)
T PRK10263 1211 DSRTILDQ 1218 (1355)
T ss_pred HHHHhcCC
Confidence 77777644
No 500
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.32 E-value=0.11 Score=61.59 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=21.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
..+||+||||+|||+|++.+++.+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999999877
Done!