Query 001031
Match_columns 1183
No_of_seqs 605 out of 2994
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 07:26:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001031.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001031hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 9.9E-61 3.4E-65 593.4 18.2 488 449-1176 199-705 (806)
2 4b4t_J 26S protease regulatory 100.0 1.3E-39 4.4E-44 376.8 25.9 226 944-1172 143-372 (405)
3 1ypw_A Transitional endoplasmi 100.0 3.2E-41 1.1E-45 422.9 6.1 485 450-1176 200-705 (806)
4 4b4t_I 26S protease regulatory 100.0 1.3E-38 4.4E-43 369.8 20.8 228 943-1173 176-407 (437)
5 4b4t_H 26S protease regulatory 100.0 6.3E-38 2.2E-42 367.0 25.4 228 943-1173 203-434 (467)
6 4b4t_M 26S protease regulatory 100.0 4.1E-38 1.4E-42 368.4 22.5 228 943-1173 175-406 (434)
7 4b4t_L 26S protease subunit RP 100.0 6.3E-38 2.2E-42 367.1 21.6 228 943-1173 175-406 (437)
8 4b4t_K 26S protease regulatory 100.0 2E-37 7E-42 362.2 23.7 228 943-1173 166-398 (428)
9 3cf2_A TER ATPase, transitiona 100.0 6.3E-34 2.2E-38 353.8 18.1 230 944-1177 199-430 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 100.0 2E-31 6.8E-36 301.1 27.4 229 944-1176 7-237 (322)
11 3eie_A Vacuolar protein sortin 100.0 9.7E-31 3.3E-35 294.6 22.0 229 944-1176 13-242 (322)
12 2qp9_X Vacuolar protein sortin 100.0 3.5E-30 1.2E-34 294.7 23.0 232 941-1176 43-275 (355)
13 3cf0_A Transitional endoplasmi 100.0 3.9E-30 1.3E-34 287.2 17.1 230 944-1176 10-243 (301)
14 2zan_A Vacuolar protein sortin 100.0 1.4E-29 4.7E-34 298.1 22.0 234 939-1176 124-359 (444)
15 2x8a_A Nuclear valosin-contain 100.0 1.6E-29 5.5E-34 279.7 19.9 227 945-1175 6-239 (274)
16 3d8b_A Fidgetin-like protein 1 100.0 1.8E-27 6.2E-32 272.1 24.0 227 944-1173 79-306 (357)
17 3h4m_A Proteasome-activating n 100.0 3E-27 1E-31 259.3 24.1 226 945-1173 13-242 (285)
18 2ce7_A Cell division protein F 100.0 2.2E-27 7.5E-32 281.4 23.4 226 943-1172 10-239 (476)
19 1lv7_A FTSH; alpha/beta domain 100.0 3.3E-27 1.1E-31 256.2 22.1 226 943-1172 6-235 (257)
20 3b9p_A CG5977-PA, isoform A; A 99.9 4.4E-27 1.5E-31 259.8 22.8 228 943-1173 15-244 (297)
21 3vfd_A Spastin; ATPase, microt 99.9 2.2E-27 7.4E-32 273.9 20.8 227 944-1173 110-337 (389)
22 3hu3_A Transitional endoplasmi 99.9 3.4E-27 1.1E-31 281.0 19.9 227 945-1175 200-428 (489)
23 2qz4_A Paraplegin; AAA+, SPG7, 99.9 7E-27 2.4E-31 252.3 20.0 225 945-1173 2-233 (262)
24 1ixz_A ATP-dependent metallopr 99.9 4.1E-25 1.4E-29 239.3 21.7 227 942-1172 9-239 (254)
25 2dhr_A FTSH; AAA+ protein, hex 99.9 1.9E-25 6.4E-30 266.3 18.4 224 944-1171 26-253 (499)
26 2r62_A Cell division protease 99.9 6.7E-27 2.3E-31 254.6 -0.6 228 941-1171 3-235 (268)
27 1iy2_A ATP-dependent metallopr 99.9 1.1E-23 3.9E-28 231.6 24.5 225 944-1172 35-263 (278)
28 1ypw_A Transitional endoplasmi 99.9 6E-23 2E-27 257.8 18.1 226 945-1174 200-427 (806)
29 4b4t_J 26S protease regulatory 99.9 6.3E-23 2.2E-27 237.7 13.0 234 448-916 142-391 (405)
30 4b4t_I 26S protease regulatory 99.9 5.2E-23 1.8E-27 239.3 10.3 235 447-916 175-425 (437)
31 3t15_A Ribulose bisphosphate c 99.9 1.4E-21 4.9E-26 217.8 17.3 175 981-1161 33-223 (293)
32 3pxi_A Negative regulator of g 99.9 5.4E-21 1.8E-25 238.5 23.9 207 949-1176 491-731 (758)
33 4b4t_M 26S protease regulatory 99.9 2.1E-22 7.2E-27 235.9 9.7 236 446-916 173-424 (434)
34 1r6b_X CLPA protein; AAA+, N-t 99.9 2.4E-21 8.2E-26 241.4 19.3 206 950-1175 459-721 (758)
35 4b4t_L 26S protease subunit RP 99.9 5.7E-22 2E-26 232.4 11.1 235 447-916 174-424 (437)
36 4b4t_H 26S protease regulatory 99.9 1.5E-21 5.1E-26 229.0 13.6 235 447-916 202-452 (467)
37 4b4t_K 26S protease regulatory 99.8 3.9E-21 1.3E-25 224.9 12.9 232 447-913 165-413 (428)
38 1qvr_A CLPB protein; coiled co 99.8 5.3E-19 1.8E-23 223.5 23.2 212 949-1177 558-827 (854)
39 3syl_A Protein CBBX; photosynt 99.8 1.8E-18 6E-23 191.6 19.9 216 950-1176 32-269 (309)
40 2c9o_A RUVB-like 1; hexameric 99.8 1.4E-20 4.7E-25 222.0 -1.5 202 944-1164 32-262 (456)
41 1ofh_A ATP-dependent HSL prote 99.7 4.1E-17 1.4E-21 179.6 17.7 224 950-1173 16-277 (310)
42 1gxc_A CHK2, CDS1, serine/thre 99.7 6.1E-17 2.1E-21 164.3 13.2 108 132-240 28-145 (149)
43 3uk6_A RUVB-like 2; hexameric 99.7 3.2E-16 1.1E-20 177.6 20.3 202 945-1172 40-313 (368)
44 1xwi_A SKD1 protein; VPS4B, AA 99.7 8.3E-17 2.8E-21 181.8 15.1 218 447-883 5-234 (322)
45 1d2n_A N-ethylmaleimide-sensit 99.7 3.7E-17 1.3E-21 178.8 11.3 181 982-1168 62-248 (272)
46 3pfi_A Holliday junction ATP-d 99.7 6.6E-16 2.3E-20 173.5 20.7 194 946-1169 26-234 (338)
47 3hws_A ATP-dependent CLP prote 99.7 1.2E-16 4.1E-21 182.4 12.3 227 950-1176 16-329 (363)
48 1lgp_A Cell cycle checkpoint p 99.6 2.8E-16 9.7E-21 152.5 10.3 105 132-239 2-114 (116)
49 2qp9_X Vacuolar protein sortin 99.6 2.8E-16 9.7E-21 179.7 11.7 229 435-883 33-272 (355)
50 3eie_A Vacuolar protein sortin 99.6 3E-16 1E-20 176.5 10.7 219 447-884 11-240 (322)
51 3m6a_A ATP-dependent protease 99.6 1.2E-15 4.1E-20 184.0 16.4 211 948-1176 80-322 (543)
52 1hqc_A RUVB; extended AAA-ATPa 99.6 3E-15 1E-19 166.5 15.6 202 946-1169 9-218 (324)
53 2zan_A Vacuolar protein sortin 99.6 1.2E-15 4.3E-20 179.5 12.1 229 435-883 116-356 (444)
54 1g41_A Heat shock protein HSLU 99.6 1.5E-14 5E-19 170.1 20.7 226 950-1175 16-413 (444)
55 4fcw_A Chaperone protein CLPB; 99.6 7.5E-15 2.6E-19 162.3 17.3 211 950-1177 18-286 (311)
56 1jbk_A CLPB protein; beta barr 99.6 1.9E-15 6.4E-20 152.6 10.0 158 946-1128 19-194 (195)
57 2chg_A Replication factor C sm 99.6 9E-14 3.1E-18 143.5 22.8 187 945-1169 13-211 (226)
58 1njg_A DNA polymerase III subu 99.6 8.2E-14 2.8E-18 145.1 22.0 187 946-1169 20-235 (250)
59 1l8q_A Chromosomal replication 99.6 4.9E-14 1.7E-18 157.9 21.1 196 945-1168 7-214 (324)
60 3pvs_A Replication-associated 99.6 2.8E-14 9.5E-19 168.3 18.6 183 946-1169 23-222 (447)
61 3u61_B DNA polymerase accessor 99.6 5.7E-14 2E-18 157.0 18.8 184 946-1166 23-220 (324)
62 1um8_A ATP-dependent CLP prote 99.6 2.3E-14 7.9E-19 164.1 15.1 226 950-1175 22-345 (376)
63 2z4s_A Chromosomal replication 99.5 7.1E-14 2.4E-18 164.4 19.4 200 945-1170 101-314 (440)
64 3bos_A Putative DNA replicatio 99.5 3.5E-13 1.2E-17 141.9 22.5 190 945-1171 24-226 (242)
65 3pxg_A Negative regulator of g 99.5 1.6E-14 5.4E-19 171.2 13.4 182 946-1167 177-383 (468)
66 2x8a_A Nuclear valosin-contain 99.5 8.7E-15 3E-19 161.9 10.5 99 814-916 162-266 (274)
67 2v1u_A Cell division control p 99.5 1.8E-13 6.2E-18 154.4 21.1 204 947-1170 17-257 (387)
68 1r6b_X CLPA protein; AAA+, N-t 99.5 4.2E-14 1.4E-18 176.4 15.7 199 946-1168 183-408 (758)
69 2r44_A Uncharacterized protein 99.5 4E-14 1.4E-18 158.9 13.8 161 948-1134 26-200 (331)
70 3hu3_A Transitional endoplasmi 99.5 1.1E-14 3.7E-19 173.7 9.2 186 690-958 286-486 (489)
71 2qby_B CDC6 homolog 3, cell di 99.5 3.6E-13 1.2E-17 152.8 21.2 195 949-1169 20-252 (384)
72 2p65_A Hypothetical protein PF 99.5 2.8E-14 9.6E-19 144.2 10.6 150 946-1120 19-187 (187)
73 1qvr_A CLPB protein; coiled co 99.5 6.8E-14 2.3E-18 177.0 16.0 199 946-1169 167-392 (854)
74 1g8p_A Magnesium-chelatase 38 99.5 1E-13 3.5E-18 155.6 15.6 205 945-1170 20-303 (350)
75 1sxj_A Activator 1 95 kDa subu 99.5 1.3E-13 4.5E-18 165.1 16.3 204 946-1165 36-255 (516)
76 3b9p_A CG5977-PA, isoform A; A 99.5 2.2E-13 7.5E-18 150.3 15.8 257 437-916 5-274 (297)
77 3te6_A Regulatory protein SIR3 99.5 9.1E-13 3.1E-17 149.1 20.8 201 951-1177 22-294 (318)
78 3cf0_A Transitional endoplasmi 99.5 8.1E-15 2.8E-19 163.5 3.9 216 448-884 9-241 (301)
79 3pxi_A Negative regulator of g 99.5 1.4E-13 4.7E-18 172.0 15.2 184 946-1169 177-385 (758)
80 1jr3_A DNA polymerase III subu 99.5 1.2E-12 4.1E-17 147.9 21.2 185 946-1167 13-226 (373)
81 2chq_A Replication factor C sm 99.5 7.5E-13 2.5E-17 146.0 17.8 189 945-1167 13-209 (319)
82 1sxj_B Activator 1 37 kDa subu 99.5 1.3E-12 4.6E-17 144.2 19.8 183 946-1166 18-213 (323)
83 1sxj_D Activator 1 41 kDa subu 99.5 8.5E-13 2.9E-17 148.0 17.9 187 945-1169 33-242 (353)
84 2jqj_A DNA damage response pro 99.5 3E-13 1E-17 137.4 12.7 110 127-240 11-126 (151)
85 2bjv_A PSP operon transcriptio 99.4 3.8E-13 1.3E-17 146.3 13.7 203 946-1169 3-240 (265)
86 1g6g_A Protein kinase RAD53; b 99.4 3.7E-13 1.3E-17 132.9 12.2 100 132-235 3-119 (127)
87 3d8b_A Fidgetin-like protein 1 99.4 5.3E-13 1.8E-17 152.6 15.2 246 449-916 79-336 (357)
88 1fnn_A CDC6P, cell division co 99.4 5.5E-12 1.9E-16 142.9 23.4 202 948-1171 16-256 (389)
89 1iqp_A RFCS; clamp loader, ext 99.4 3E-12 1E-16 141.6 20.6 189 945-1167 21-217 (327)
90 2qby_A CDC6 homolog 1, cell di 99.4 3.1E-12 1.1E-16 144.1 20.0 202 947-1170 18-253 (386)
91 3i6u_A CDS1, serine/threonine- 99.4 3.9E-13 1.3E-17 156.1 12.0 109 131-240 7-125 (419)
92 1in4_A RUVB, holliday junction 99.4 1.4E-11 4.7E-16 139.6 23.5 197 946-1169 22-230 (334)
93 1sxj_E Activator 1 40 kDa subu 99.4 3.9E-12 1.3E-16 143.4 17.6 189 945-1168 10-243 (354)
94 1ojl_A Transcriptional regulat 99.4 7.4E-13 2.5E-17 148.4 11.0 192 950-1169 3-235 (304)
95 3vfd_A Spastin; ATPase, microt 99.4 7.6E-13 2.6E-17 152.6 11.1 258 435-915 97-366 (389)
96 2ce7_A Cell division protein F 99.4 1.2E-12 4.1E-17 155.5 12.3 127 690-882 97-239 (476)
97 2c9o_A RUVB-like 1; hexameric 99.4 7.4E-13 2.5E-17 156.2 10.4 108 1045-1170 297-418 (456)
98 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 1.2E-12 4.1E-17 156.4 9.3 200 950-1173 23-270 (500)
99 4h87_A Kanadaptin; FHA domain 99.3 4.6E-12 1.6E-16 125.8 10.4 87 146-234 34-129 (130)
100 1lv7_A FTSH; alpha/beta domain 99.3 9.8E-12 3.3E-16 134.6 13.3 127 690-882 93-235 (257)
101 3h4m_A Proteasome-activating n 99.3 4.8E-12 1.6E-16 138.6 10.4 215 448-883 11-242 (285)
102 1sxj_C Activator 1 40 kDa subu 99.3 5.4E-11 1.8E-15 134.4 18.9 173 945-1154 21-205 (340)
103 1g3g_A Protien kinase SPK1; FH 99.2 4.6E-11 1.6E-15 123.1 13.6 101 131-235 30-147 (164)
104 2pie_A E3 ubiquitin-protein li 99.2 2.2E-11 7.4E-16 122.0 10.7 101 131-236 7-117 (138)
105 1a5t_A Delta prime, HOLB; zinc 99.2 3.1E-10 1E-14 128.5 21.4 173 954-1164 7-207 (334)
106 3f9v_A Minichromosome maintena 99.2 7.7E-13 2.6E-17 161.2 -0.4 211 950-1172 296-570 (595)
107 3co5_A Putative two-component 99.2 5.1E-12 1.8E-16 125.9 5.6 132 950-1120 5-141 (143)
108 2qz4_A Paraplegin; AAA+, SPG7, 99.2 1.8E-11 6.2E-16 131.7 10.1 72 450-529 2-74 (262)
109 2dhr_A FTSH; AAA+ protein, hex 99.2 8.2E-12 2.8E-16 149.1 8.0 66 814-881 185-253 (499)
110 3n70_A Transport activator; si 99.2 1.2E-11 4.1E-16 123.4 7.9 132 950-1120 2-143 (145)
111 3va4_A Mediator of DNA damage 99.2 5.9E-11 2E-15 118.2 10.9 102 129-236 19-126 (132)
112 2r62_A Cell division protease 99.2 1.1E-11 3.7E-16 134.7 4.5 74 444-525 1-75 (268)
113 1qu5_A Protein kinase SPK1; FH 99.1 6.5E-11 2.2E-15 123.9 9.5 101 133-234 28-145 (182)
114 1uht_A Expressed protein; FHA 99.1 1.9E-10 6.5E-15 111.9 10.5 93 130-227 8-105 (118)
115 2gno_A DNA polymerase III, gam 99.1 2.6E-09 9E-14 120.0 19.8 142 953-1132 1-152 (305)
116 1dmz_A Protein (protein kinase 99.1 3.1E-10 1.1E-14 116.2 10.4 100 134-234 5-121 (158)
117 3hx1_A SLR1951 protein; P74513 99.1 3.8E-10 1.3E-14 112.2 9.8 84 146-236 24-114 (131)
118 1r21_A Antigen KI-67; beta san 99.1 3E-10 1E-14 112.1 9.0 96 131-236 9-108 (128)
119 1ixz_A ATP-dependent metallopr 99.1 1.5E-10 5E-15 125.2 7.4 67 814-882 170-239 (254)
120 3els_A PRE-mRNA leakage protei 99.0 3.9E-10 1.3E-14 115.6 9.9 88 146-234 49-156 (158)
121 3po8_A RV0020C protein, putati 99.0 7.2E-10 2.5E-14 104.8 10.9 74 144-225 15-89 (100)
122 1w5s_A Origin recognition comp 99.0 3.5E-09 1.2E-13 121.0 17.9 206 948-1169 21-273 (412)
123 2xt9_B Putative signal transdu 99.0 1.3E-09 4.3E-14 105.8 11.8 84 143-237 22-106 (115)
124 2csw_A Ubiquitin ligase protei 99.0 4.2E-10 1.4E-14 113.6 8.4 99 132-235 16-124 (145)
125 3k1j_A LON protease, ATP-depen 99.0 7.4E-10 2.5E-14 135.2 11.9 204 946-1170 38-356 (604)
126 2jpe_A Nuclear inhibitor of pr 99.0 2.6E-10 9E-15 114.3 6.1 85 146-234 48-135 (140)
127 3cmw_A Protein RECA, recombina 99.0 6.7E-10 2.3E-14 147.4 10.3 153 943-1098 1014-1217(1706)
128 2kb3_A Oxoglutarate dehydrogen 99.0 2.1E-09 7.1E-14 108.4 11.6 81 145-236 59-140 (143)
129 1iy2_A ATP-dependent metallopr 99.0 1.3E-09 4.3E-14 119.8 10.2 127 690-882 121-263 (278)
130 1mzk_A Kinase associated prote 99.0 1.1E-09 3.8E-14 109.7 8.8 79 153-237 33-120 (139)
131 2kfu_A RV1827 PThr 22; FHA dom 98.9 4E-09 1.4E-13 108.5 12.0 82 145-237 68-150 (162)
132 3elv_A PRE-mRNA leakage protei 98.9 2.7E-09 9.3E-14 113.1 9.8 81 146-227 96-193 (205)
133 3gqs_A Adenylate cyclase-like 98.9 5.5E-09 1.9E-13 99.8 10.1 81 146-235 18-101 (106)
134 4ejq_A Kinesin-like protein KI 98.9 6.5E-09 2.2E-13 106.1 10.8 95 136-235 40-143 (154)
135 1ny5_A Transcriptional regulat 98.9 8.4E-09 2.9E-13 119.4 12.8 199 950-1169 138-370 (387)
136 3oun_A Putative uncharacterize 98.9 6.6E-09 2.3E-13 106.2 10.2 72 146-225 79-151 (157)
137 1wln_A Afadin; beta sandwich, 98.8 1.2E-08 4.1E-13 99.7 10.8 81 147-236 31-114 (120)
138 4akg_A Glutathione S-transfera 98.8 2.1E-08 7.3E-13 138.4 14.7 139 985-1134 1268-1433(2695)
139 2ff4_A Probable regulatory pro 98.8 2.2E-08 7.4E-13 116.0 12.4 94 131-235 286-380 (388)
140 3fm8_A Kinesin-like protein KI 98.7 5.6E-08 1.9E-12 95.8 12.1 98 129-234 23-122 (124)
141 3t15_A Ribulose bisphosphate c 98.7 4.1E-09 1.4E-13 117.3 3.5 101 702-870 97-222 (293)
142 3dzd_A Transcriptional regulat 98.7 4.6E-08 1.6E-12 112.6 10.5 198 950-1168 130-360 (368)
143 3ec2_A DNA replication protein 98.6 6.8E-08 2.3E-12 98.8 9.9 70 984-1055 38-112 (180)
144 2kjq_A DNAA-related protein; s 98.6 1.7E-07 6E-12 94.4 12.1 105 984-1117 36-146 (149)
145 3uv0_A Mutator 2, isoform B; F 98.6 1.2E-07 4.2E-12 89.1 10.0 70 143-220 11-81 (102)
146 2fna_A Conserved hypothetical 98.6 1.8E-06 6E-11 96.0 19.4 185 947-1164 11-252 (357)
147 2w58_A DNAI, primosome compone 98.5 1.3E-07 4.3E-12 98.3 8.1 69 985-1055 55-127 (202)
148 2brf_A Bifunctional polynucleo 98.5 3.3E-07 1.1E-11 88.3 10.2 95 134-234 9-105 (110)
149 2qen_A Walker-type ATPase; unk 98.5 4.8E-06 1.6E-10 92.4 20.8 189 947-1164 10-248 (350)
150 3kt9_A Aprataxin; FHA domain, 98.5 4.7E-07 1.6E-11 86.2 10.7 95 134-234 4-99 (102)
151 3kw6_A 26S protease regulatory 98.5 1.3E-07 4.6E-12 85.1 6.3 57 1117-1173 1-57 (78)
152 3f8t_A Predicted ATPase involv 98.4 3.3E-07 1.1E-11 108.2 9.8 202 951-1173 215-467 (506)
153 2krk_A 26S protease regulatory 98.4 1.6E-07 5.4E-12 86.8 5.2 58 1116-1173 8-65 (86)
154 2krk_A 26S protease regulatory 98.4 1.1E-07 3.6E-12 87.9 3.7 75 826-916 9-83 (86)
155 4akg_A Glutathione S-transfera 98.4 1.8E-06 6.2E-11 119.6 16.8 132 985-1129 646-790 (2695)
156 1yj5_C 5' polynucleotide kinas 98.4 1.2E-06 4E-11 87.5 10.4 97 133-235 8-106 (143)
157 2vhj_A Ntpase P4, P4; non- hyd 98.3 3.9E-07 1.3E-11 103.2 5.5 106 985-1098 124-235 (331)
158 1ujx_A Polynucleotide kinase 3 98.3 8.2E-07 2.8E-11 86.6 6.7 96 133-234 15-112 (119)
159 2r2a_A Uncharacterized protein 98.3 6.2E-07 2.1E-11 95.0 6.5 128 985-1122 6-156 (199)
160 3kw6_A 26S protease regulatory 98.3 3.4E-07 1.2E-11 82.4 3.6 72 826-914 1-73 (78)
161 3vlf_B 26S protease regulatory 98.2 1.2E-06 4E-11 81.1 6.0 54 1120-1173 2-55 (88)
162 2qgz_A Helicase loader, putati 98.2 1.1E-06 3.9E-11 98.6 5.9 70 984-1055 152-226 (308)
163 4egx_A Kinesin-like protein KI 98.2 5.7E-06 2E-10 86.7 10.7 96 136-236 70-174 (184)
164 3vlf_B 26S protease regulatory 98.2 1.2E-06 4.1E-11 81.0 4.8 71 829-916 2-73 (88)
165 3aji_B S6C, proteasome (prosom 98.1 2.1E-06 7.3E-11 78.0 4.6 71 829-916 2-73 (83)
166 3aji_B S6C, proteasome (prosom 98.0 2.5E-06 8.7E-11 77.5 4.0 54 1120-1173 2-55 (83)
167 3vkg_A Dynein heavy chain, cyt 98.0 1.6E-05 5.4E-10 111.2 12.9 139 985-1134 1305-1471(3245)
168 1tue_A Replication protein E1; 98.0 8.8E-06 3E-10 86.8 7.7 124 985-1135 59-208 (212)
169 3vkg_A Dynein heavy chain, cyt 97.9 7.5E-05 2.6E-09 104.6 15.6 131 985-1128 605-749 (3245)
170 1u0j_A DNA replication protein 97.8 2.5E-05 8.4E-10 86.4 8.0 126 984-1131 104-250 (267)
171 3syl_A Protein CBBX; photosynt 97.8 4.4E-05 1.5E-09 84.1 9.8 42 704-745 130-177 (309)
172 3huf_A DNA repair and telomere 97.8 5.7E-05 2E-09 84.5 9.6 81 146-228 15-107 (325)
173 2dzn_B 26S protease regulatory 97.7 4.4E-06 1.5E-10 76.1 0.3 52 1122-1173 1-52 (82)
174 2dzn_B 26S protease regulatory 97.7 1.5E-05 5.1E-10 72.5 3.8 67 831-914 1-68 (82)
175 3cmu_A Protein RECA, recombina 97.7 5.6E-05 1.9E-09 102.2 10.7 77 981-1057 1424-1519(2050)
176 1g41_A Heat shock protein HSLU 97.7 2.8E-05 9.5E-10 91.7 5.5 68 462-532 21-88 (444)
177 1jr3_D DNA polymerase III, del 97.6 0.00074 2.5E-08 76.0 16.1 157 985-1167 19-190 (343)
178 4a0e_A YSCD, type III secretio 97.6 0.00015 5.1E-09 71.2 8.8 77 142-226 14-91 (123)
179 1ye8_A Protein THEP1, hypothet 97.6 0.00042 1.4E-08 71.7 12.4 27 986-1012 2-28 (178)
180 3uk6_A RUVB-like 2; hexameric 97.6 9.8E-05 3.3E-09 83.4 8.3 140 689-882 172-313 (368)
181 1wv3_A Similar to DNA segregat 97.5 0.00011 3.7E-09 80.0 7.6 65 151-223 91-159 (238)
182 1d2n_A N-ethylmaleimide-sensit 97.4 0.00013 4.6E-09 79.3 5.8 36 490-527 62-97 (272)
183 3m6a_A ATP-dependent protease 97.3 0.00016 5.6E-09 87.2 5.4 35 491-527 107-141 (543)
184 2cvh_A DNA repair and recombin 97.2 0.0023 7.9E-08 66.4 12.1 37 983-1019 19-55 (220)
185 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.0031 1.1E-07 65.6 12.7 35 983-1017 22-59 (235)
186 2r8r_A Sensor protein; KDPD, P 97.1 0.0076 2.6E-07 65.1 15.8 160 985-1168 7-207 (228)
187 1xp8_A RECA protein, recombina 97.1 0.0029 9.9E-08 72.9 12.9 75 983-1057 73-166 (366)
188 1z6t_A APAF-1, apoptotic prote 97.1 0.0057 2E-07 73.5 16.0 173 949-1163 124-329 (591)
189 1n0w_A DNA repair protein RAD5 97.0 0.0021 7.2E-08 67.8 10.1 75 983-1057 23-133 (243)
190 3pxg_A Negative regulator of g 96.9 0.00026 8.7E-09 83.9 2.6 47 690-748 256-302 (468)
191 2zr9_A Protein RECA, recombina 96.9 0.0033 1.1E-07 71.8 11.7 74 983-1056 60-152 (349)
192 3hr8_A Protein RECA; alpha and 96.9 0.0032 1.1E-07 72.3 11.2 75 983-1057 60-153 (356)
193 1svm_A Large T antigen; AAA+ f 96.9 0.00026 8.9E-09 81.9 2.0 64 982-1057 167-230 (377)
194 2orw_A Thymidine kinase; TMTK, 96.8 0.00094 3.2E-08 69.4 5.4 30 986-1015 5-37 (184)
195 1qhx_A CPT, protein (chloramph 96.8 0.0019 6.4E-08 65.1 7.1 34 985-1018 4-37 (178)
196 3sfz_A APAF-1, apoptotic pepti 96.8 0.015 5.2E-07 75.1 17.3 174 949-1162 124-328 (1249)
197 3trf_A Shikimate kinase, SK; a 96.6 0.001 3.6E-08 67.6 3.8 33 984-1016 5-37 (185)
198 1u94_A RECA protein, recombina 96.6 0.008 2.7E-07 68.9 11.5 75 983-1057 62-155 (356)
199 3pfi_A Holliday junction ATP-d 96.6 0.0074 2.5E-07 67.3 10.8 62 452-527 27-88 (338)
200 1v5w_A DMC1, meiotic recombina 96.6 0.0066 2.3E-07 69.0 10.5 75 983-1057 121-233 (343)
201 2b8t_A Thymidine kinase; deoxy 96.5 0.014 4.8E-07 62.8 12.1 70 985-1055 13-101 (223)
202 2z43_A DNA repair and recombin 96.5 0.0044 1.5E-07 69.7 8.3 75 983-1057 106-217 (324)
203 1ofh_A ATP-dependent HSL prote 96.5 0.0046 1.6E-07 67.5 8.1 67 462-531 21-87 (310)
204 3cmu_A Protein RECA, recombina 96.4 0.0047 1.6E-07 84.0 8.9 77 981-1057 729-824 (2050)
205 2dr3_A UPF0273 protein PH0284; 96.4 0.012 4.3E-07 61.8 10.4 35 983-1017 22-59 (247)
206 3vaa_A Shikimate kinase, SK; s 96.3 0.0019 6.4E-08 67.1 3.8 34 983-1016 24-57 (199)
207 2iut_A DNA translocase FTSK; n 96.3 0.04 1.4E-06 66.9 15.5 73 1045-1128 345-419 (574)
208 3kb2_A SPBC2 prophage-derived 96.3 0.0024 8.2E-08 63.6 4.1 31 986-1016 3-33 (173)
209 3io5_A Recombination and repai 96.3 0.011 3.8E-07 67.0 9.8 73 986-1058 30-126 (333)
210 2a5y_B CED-4; apoptosis; HET: 96.2 0.038 1.3E-06 66.5 14.6 172 952-1161 131-336 (549)
211 1jbk_A CLPB protein; beta barr 96.2 0.023 7.7E-07 56.5 10.7 52 690-745 103-159 (195)
212 4a74_A DNA repair and recombin 96.2 0.014 4.7E-07 60.9 9.3 26 983-1008 24-49 (231)
213 2ehv_A Hypothetical protein PH 96.2 0.025 8.6E-07 59.6 11.5 35 983-1017 29-67 (251)
214 3iij_A Coilin-interacting nucl 96.1 0.0028 9.6E-08 64.3 3.8 31 985-1015 12-42 (180)
215 2iyv_A Shikimate kinase, SK; t 96.1 0.0026 9E-08 64.6 3.6 31 986-1016 4-34 (184)
216 3lda_A DNA repair protein RAD5 96.1 0.015 5E-07 67.9 10.1 76 983-1058 177-288 (400)
217 1hqc_A RUVB; extended AAA-ATPa 96.1 0.0055 1.9E-07 67.7 6.3 33 492-526 38-70 (324)
218 1via_A Shikimate kinase; struc 96.1 0.0037 1.3E-07 63.2 4.4 30 986-1015 6-35 (175)
219 1sxj_A Activator 1 95 kDa subu 96.1 0.017 5.9E-07 69.0 10.8 76 452-531 37-114 (516)
220 2p5t_B PEZT; postsegregational 96.1 0.017 5.9E-07 62.4 9.7 38 983-1020 31-68 (253)
221 3upu_A ATP-dependent DNA helic 96.0 0.012 4.1E-07 69.2 9.1 23 986-1008 47-69 (459)
222 2rhm_A Putative kinase; P-loop 96.0 0.0048 1.6E-07 62.8 4.9 32 984-1015 5-36 (193)
223 1zuh_A Shikimate kinase; alpha 96.0 0.0032 1.1E-07 63.1 3.6 32 985-1016 8-39 (168)
224 1vma_A Cell division protein F 96.0 0.064 2.2E-06 60.2 14.4 72 983-1054 103-197 (306)
225 2ius_A DNA translocase FTSK; n 96.0 0.07 2.4E-06 64.0 15.3 76 1044-1130 297-375 (512)
226 1y63_A LMAJ004144AAA protein; 96.0 0.0034 1.2E-07 64.4 3.4 32 985-1016 11-43 (184)
227 1aky_A Adenylate kinase; ATP:A 95.9 0.0053 1.8E-07 64.5 4.9 32 984-1015 4-35 (220)
228 2i3b_A HCR-ntpase, human cance 95.9 0.029 9.9E-07 58.6 10.3 23 986-1008 3-25 (189)
229 1kag_A SKI, shikimate kinase I 95.9 0.0053 1.8E-07 61.5 4.5 30 985-1014 5-34 (173)
230 1gvn_B Zeta; postsegregational 95.9 0.018 6.3E-07 63.7 9.2 36 984-1019 33-68 (287)
231 2c95_A Adenylate kinase 1; tra 95.9 0.0043 1.5E-07 63.2 3.7 32 985-1016 10-41 (196)
232 3lw7_A Adenylate kinase relate 95.9 0.0052 1.8E-07 60.7 4.2 29 986-1015 3-31 (179)
233 2ze6_A Isopentenyl transferase 95.9 0.0046 1.6E-07 67.1 4.1 32 986-1017 3-34 (253)
234 1tev_A UMP-CMP kinase; ploop, 95.8 0.0061 2.1E-07 61.8 4.7 31 985-1015 4-34 (196)
235 2cdn_A Adenylate kinase; phosp 95.8 0.0069 2.4E-07 62.6 5.1 31 985-1015 21-51 (201)
236 1pzn_A RAD51, DNA repair and r 95.8 0.022 7.5E-07 64.9 9.7 37 983-1019 130-175 (349)
237 1e6c_A Shikimate kinase; phosp 95.8 0.0059 2E-07 61.0 4.4 30 986-1015 4-33 (173)
238 3bh0_A DNAB-like replicative h 95.8 0.058 2E-06 60.4 12.8 36 982-1017 66-104 (315)
239 3u61_B DNA polymerase accessor 95.8 0.02 7E-07 63.4 9.0 58 452-527 24-81 (324)
240 3cm0_A Adenylate kinase; ATP-b 95.7 0.0061 2.1E-07 61.8 4.2 31 985-1015 5-35 (186)
241 3dm5_A SRP54, signal recogniti 95.7 0.067 2.3E-06 63.1 13.5 73 983-1055 99-194 (443)
242 3a4m_A L-seryl-tRNA(SEC) kinas 95.7 0.016 5.6E-07 62.9 7.6 36 985-1020 5-43 (260)
243 2pt5_A Shikimate kinase, SK; a 95.7 0.0057 2E-07 61.0 3.6 30 986-1015 2-31 (168)
244 2fz4_A DNA repair protein RAD2 95.7 0.037 1.3E-06 59.4 10.1 33 986-1018 110-142 (237)
245 2bwj_A Adenylate kinase 5; pho 95.6 0.0055 1.9E-07 62.6 3.5 31 985-1015 13-43 (199)
246 1nlf_A Regulatory protein REPA 95.6 0.043 1.5E-06 59.9 10.7 26 983-1008 29-54 (279)
247 2zts_A Putative uncharacterize 95.6 0.041 1.4E-06 57.9 10.2 35 983-1017 29-67 (251)
248 3jvv_A Twitching mobility prot 95.6 0.015 5.2E-07 66.6 7.3 69 985-1053 124-206 (356)
249 2i1q_A DNA repair and recombin 95.6 0.014 4.9E-07 65.1 7.0 75 983-1057 97-218 (322)
250 3t61_A Gluconokinase; PSI-biol 95.6 0.0095 3.3E-07 61.6 5.0 32 984-1015 18-49 (202)
251 3dl0_A Adenylate kinase; phosp 95.6 0.0084 2.9E-07 62.6 4.6 30 986-1015 2-31 (216)
252 2vli_A Antibiotic resistance p 95.6 0.006 2.1E-07 61.6 3.3 29 985-1013 6-34 (183)
253 1ly1_A Polynucleotide kinase; 95.5 0.006 2.1E-07 61.1 3.2 30 985-1014 3-33 (181)
254 3fb4_A Adenylate kinase; psych 95.5 0.0087 3E-07 62.4 4.5 30 986-1015 2-31 (216)
255 1qf9_A UMP/CMP kinase, protein 95.5 0.0091 3.1E-07 60.3 4.5 31 985-1015 7-37 (194)
256 1ak2_A Adenylate kinase isoenz 95.5 0.01 3.4E-07 63.2 4.9 31 985-1015 17-47 (233)
257 1kht_A Adenylate kinase; phosp 95.5 0.0079 2.7E-07 60.8 4.0 25 985-1009 4-28 (192)
258 1ukz_A Uridylate kinase; trans 95.5 0.0075 2.6E-07 62.2 3.8 32 985-1016 16-47 (203)
259 1zp6_A Hypothetical protein AT 95.5 0.007 2.4E-07 61.6 3.5 36 984-1019 9-44 (191)
260 3tlx_A Adenylate kinase 2; str 95.5 0.01 3.5E-07 63.9 5.0 33 983-1015 28-60 (243)
261 2r6a_A DNAB helicase, replicat 95.4 0.044 1.5E-06 64.5 10.6 36 982-1017 201-240 (454)
262 1zd8_A GTP:AMP phosphotransfer 95.4 0.0092 3.1E-07 63.1 4.4 31 985-1015 8-38 (227)
263 1knq_A Gluconate kinase; ALFA/ 95.4 0.012 4E-07 59.3 4.9 31 984-1014 8-38 (175)
264 3be4_A Adenylate kinase; malar 95.4 0.0095 3.3E-07 62.7 4.2 31 985-1015 6-36 (217)
265 1cr0_A DNA primase/helicase; R 95.4 0.061 2.1E-06 59.0 10.8 34 983-1016 34-71 (296)
266 3e1s_A Exodeoxyribonuclease V, 95.3 0.0092 3.1E-07 72.6 4.4 32 985-1016 205-239 (574)
267 3sr0_A Adenylate kinase; phosp 95.3 0.011 3.7E-07 62.7 4.4 29 986-1014 2-30 (206)
268 2pbr_A DTMP kinase, thymidylat 95.3 0.014 4.6E-07 59.2 4.9 31 986-1016 2-35 (195)
269 2q6t_A DNAB replication FORK h 95.3 0.055 1.9E-06 63.4 10.7 36 982-1017 198-237 (444)
270 3umf_A Adenylate kinase; rossm 95.2 0.013 4.6E-07 62.7 4.8 31 984-1014 29-59 (217)
271 4eun_A Thermoresistant glucoki 95.2 0.014 4.9E-07 60.4 4.8 31 983-1013 28-58 (200)
272 4fcw_A Chaperone protein CLPB; 95.2 0.034 1.1E-06 60.9 8.1 36 493-530 48-86 (311)
273 1zak_A Adenylate kinase; ATP:A 95.2 0.011 3.7E-07 62.2 3.9 30 985-1014 6-35 (222)
274 1e4v_A Adenylate kinase; trans 95.2 0.014 4.7E-07 61.2 4.5 30 986-1015 2-31 (214)
275 2pez_A Bifunctional 3'-phospho 95.2 0.018 6.2E-07 58.3 5.3 35 984-1018 5-42 (179)
276 3kl4_A SRP54, signal recogniti 95.1 0.16 5.4E-06 59.8 13.9 73 983-1055 96-191 (433)
277 2ga8_A Hypothetical 39.9 kDa p 95.1 0.012 3.9E-07 67.7 4.1 30 985-1014 25-54 (359)
278 3crm_A TRNA delta(2)-isopenten 95.1 0.035 1.2E-06 62.9 7.9 33 985-1017 6-38 (323)
279 2eyu_A Twitching motility prot 95.1 0.03 1E-06 61.3 7.1 70 983-1052 24-107 (261)
280 2jaq_A Deoxyguanosine kinase; 95.0 0.014 4.8E-07 59.6 4.1 29 986-1014 2-30 (205)
281 1cke_A CK, MSSA, protein (cyti 94.9 0.016 5.6E-07 60.6 4.4 30 985-1014 6-35 (227)
282 1g5t_A COB(I)alamin adenosyltr 94.9 0.15 5E-06 54.0 11.6 116 986-1117 30-178 (196)
283 1nks_A Adenylate kinase; therm 94.9 0.01 3.6E-07 59.9 2.7 32 986-1017 3-37 (194)
284 2xb4_A Adenylate kinase; ATP-b 94.9 0.017 5.7E-07 61.2 4.4 30 986-1015 2-31 (223)
285 1vt4_I APAF-1 related killer D 94.9 0.34 1.1E-05 62.8 16.6 43 952-1007 131-173 (1221)
286 2z0h_A DTMP kinase, thymidylat 94.9 0.021 7.1E-07 58.2 4.9 31 987-1017 3-36 (197)
287 2if2_A Dephospho-COA kinase; a 94.8 0.012 4.2E-07 60.6 3.0 30 986-1016 3-32 (204)
288 1q57_A DNA primase/helicase; d 94.8 0.11 3.7E-06 61.8 11.4 36 983-1018 241-280 (503)
289 3bgw_A DNAB-like replicative h 94.8 0.12 4.2E-06 60.8 11.7 37 982-1018 195-234 (444)
290 2v54_A DTMP kinase, thymidylat 94.8 0.019 6.5E-07 58.9 4.3 33 985-1017 5-38 (204)
291 3b6e_A Interferon-induced heli 94.8 0.071 2.4E-06 54.7 8.6 24 985-1008 49-72 (216)
292 3cmw_A Protein RECA, recombina 94.6 0.059 2E-06 72.7 9.4 76 985-1060 1432-1526(1706)
293 3ake_A Cytidylate kinase; CMP 94.6 0.023 7.9E-07 58.3 4.5 31 986-1016 4-34 (208)
294 2ewv_A Twitching motility prot 94.6 0.038 1.3E-06 63.6 6.6 71 983-1053 135-219 (372)
295 1p9r_A General secretion pathw 94.5 0.12 4.3E-06 60.4 10.7 93 946-1053 144-246 (418)
296 2plr_A DTMP kinase, probable t 94.4 0.036 1.2E-06 56.9 5.5 31 985-1015 5-37 (213)
297 3uie_A Adenylyl-sulfate kinase 94.4 0.036 1.2E-06 57.3 5.5 36 983-1018 24-62 (200)
298 2bbw_A Adenylate kinase 4, AK4 94.3 0.028 9.7E-07 60.1 4.4 31 984-1014 27-57 (246)
299 2wwf_A Thymidilate kinase, put 94.3 0.014 4.8E-07 60.3 2.0 29 984-1012 10-38 (212)
300 4e22_A Cytidylate kinase; P-lo 94.3 0.036 1.2E-06 59.9 5.2 31 984-1014 27-57 (252)
301 1jjv_A Dephospho-COA kinase; P 94.2 0.025 8.7E-07 58.4 3.8 29 986-1015 4-32 (206)
302 1uf9_A TT1252 protein; P-loop, 94.2 0.03 1E-06 57.3 4.3 31 984-1015 8-38 (203)
303 2gxq_A Heat resistant RNA depe 94.2 0.2 6.7E-06 51.3 10.3 23 985-1007 39-62 (207)
304 3r20_A Cytidylate kinase; stru 94.2 0.033 1.1E-06 60.2 4.7 30 985-1014 10-39 (233)
305 2grj_A Dephospho-COA kinase; T 94.2 0.024 8E-07 59.4 3.4 31 986-1016 14-44 (192)
306 3nwj_A ATSK2; P loop, shikimat 94.1 0.036 1.2E-06 60.5 4.7 32 985-1016 49-80 (250)
307 1nn5_A Similar to deoxythymidy 94.0 0.018 6.2E-07 59.5 2.1 26 984-1009 9-34 (215)
308 1uj2_A Uridine-cytidine kinase 94.0 0.047 1.6E-06 58.7 5.4 37 985-1021 23-67 (252)
309 3pie_A 5'->3' exoribonuclease 93.9 0.03 1E-06 72.0 4.1 77 583-669 1050-1126(1155)
310 2yvu_A Probable adenylyl-sulfa 93.8 0.06 2.1E-06 54.8 5.5 35 983-1017 12-49 (186)
311 2px0_A Flagellar biosynthesis 93.8 0.23 7.8E-06 55.3 10.6 36 983-1018 104-143 (296)
312 3a8t_A Adenylate isopentenyltr 93.7 0.027 9.2E-07 64.3 3.0 34 985-1018 41-74 (339)
313 1qde_A EIF4A, translation init 93.6 0.3 1E-05 50.7 10.6 60 945-1007 13-75 (224)
314 2pt7_A CAG-ALFA; ATPase, prote 93.5 0.054 1.8E-06 61.3 5.1 69 985-1053 172-250 (330)
315 1q3t_A Cytidylate kinase; nucl 93.5 0.057 1.9E-06 57.4 5.0 32 984-1015 16-47 (236)
316 2h92_A Cytidylate kinase; ross 93.5 0.054 1.8E-06 56.4 4.6 31 985-1015 4-34 (219)
317 1xx6_A Thymidine kinase; NESG, 93.4 0.25 8.4E-06 51.7 9.4 69 985-1055 9-93 (191)
318 4gp7_A Metallophosphoesterase; 93.3 0.14 4.7E-06 51.9 7.3 19 985-1003 10-28 (171)
319 1vht_A Dephospho-COA kinase; s 93.3 0.057 1.9E-06 56.4 4.5 30 985-1015 5-34 (218)
320 2yhs_A FTSY, cell division pro 93.3 0.7 2.4E-05 55.3 14.2 26 983-1008 292-317 (503)
321 2z4s_A Chromosomal replication 93.3 0.091 3.1E-06 61.7 6.6 116 704-880 194-314 (440)
322 3foz_A TRNA delta(2)-isopenten 93.2 0.052 1.8E-06 61.3 4.1 33 985-1017 11-43 (316)
323 2xau_A PRE-mRNA-splicing facto 93.1 0.33 1.1E-05 61.1 11.7 59 947-1007 73-132 (773)
324 1ltq_A Polynucleotide kinase; 93.0 0.052 1.8E-06 59.5 3.8 31 985-1015 3-34 (301)
325 2qor_A Guanylate kinase; phosp 93.0 0.055 1.9E-06 56.2 3.7 26 984-1009 12-37 (204)
326 1w36_D RECD, exodeoxyribonucle 92.9 0.19 6.3E-06 61.5 8.9 24 985-1008 165-188 (608)
327 2f6r_A COA synthase, bifunctio 92.9 0.05 1.7E-06 59.9 3.5 30 985-1015 76-105 (281)
328 2qt1_A Nicotinamide riboside k 92.9 0.038 1.3E-06 57.3 2.3 31 984-1014 21-52 (207)
329 3d3q_A TRNA delta(2)-isopenten 92.9 0.051 1.7E-06 62.0 3.5 33 985-1017 8-40 (340)
330 1t6n_A Probable ATP-dependent 92.9 0.76 2.6E-05 47.6 12.2 23 985-1007 52-74 (220)
331 3llm_A ATP-dependent RNA helic 92.8 0.5 1.7E-05 50.1 11.0 21 985-1005 77-97 (235)
332 3hws_A ATP-dependent CLP prote 92.8 0.14 4.7E-06 58.1 7.0 67 462-530 21-87 (363)
333 2bdt_A BH3686; alpha-beta prot 92.8 0.072 2.5E-06 54.2 4.3 25 986-1010 4-28 (189)
334 1m7g_A Adenylylsulfate kinase; 92.8 0.077 2.6E-06 55.4 4.5 36 984-1019 25-64 (211)
335 4b3f_X DNA-binding protein smu 92.7 0.43 1.5E-05 58.5 11.6 48 954-1017 191-241 (646)
336 4a1f_A DNAB helicase, replicat 92.7 0.27 9.3E-06 56.0 9.1 36 982-1017 44-82 (338)
337 3fdi_A Uncharacterized protein 92.6 0.072 2.5E-06 55.9 4.1 29 986-1014 8-36 (201)
338 2pl3_A Probable ATP-dependent 92.6 0.55 1.9E-05 49.3 10.8 55 945-1002 24-80 (236)
339 2oap_1 GSPE-2, type II secreti 92.6 0.083 2.9E-06 63.4 5.0 69 985-1053 261-343 (511)
340 1hv8_A Putative ATP-dependent 92.3 0.5 1.7E-05 52.1 10.6 23 985-1007 45-67 (367)
341 1sky_E F1-ATPase, F1-ATP synth 92.3 0.31 1.1E-05 57.9 9.2 24 985-1008 152-175 (473)
342 3exa_A TRNA delta(2)-isopenten 92.2 0.066 2.3E-06 60.6 3.3 33 985-1017 4-36 (322)
343 2axn_A 6-phosphofructo-2-kinas 92.1 0.17 5.8E-06 60.8 6.9 35 985-1019 36-73 (520)
344 3asz_A Uridine kinase; cytidin 92.1 0.081 2.8E-06 54.7 3.6 26 984-1009 6-31 (211)
345 2j41_A Guanylate kinase; GMP, 92.1 0.088 3E-06 53.9 3.8 25 984-1008 6-30 (207)
346 1vec_A ATP-dependent RNA helic 92.0 0.41 1.4E-05 48.9 8.9 18 985-1002 41-58 (206)
347 1w4r_A Thymidine kinase; type 91.9 0.22 7.4E-06 52.6 6.5 33 985-1017 21-56 (195)
348 2j9r_A Thymidine kinase; TK1, 91.9 0.54 1.8E-05 50.3 9.7 30 987-1016 31-63 (214)
349 3zvl_A Bifunctional polynucleo 91.8 0.067 2.3E-06 62.3 2.8 31 984-1014 258-288 (416)
350 1kgd_A CASK, peripheral plasma 91.8 0.1 3.4E-06 53.2 3.8 25 985-1009 6-30 (180)
351 3eph_A TRNA isopentenyltransfe 91.8 0.099 3.4E-06 61.0 4.1 33 985-1017 3-35 (409)
352 3tau_A Guanylate kinase, GMP k 91.6 0.089 3E-06 55.0 3.3 27 983-1009 7-33 (208)
353 3tr0_A Guanylate kinase, GMP k 91.6 0.11 3.7E-06 53.2 3.9 25 985-1009 8-32 (205)
354 1rz3_A Hypothetical protein rb 91.6 0.17 6E-06 52.4 5.5 35 984-1018 22-59 (201)
355 1zu4_A FTSY; GTPase, signal re 91.6 1.9 6.4E-05 48.6 14.2 35 983-1017 104-141 (320)
356 3e70_C DPA, signal recognition 91.4 0.42 1.4E-05 54.1 8.7 26 983-1008 128-153 (328)
357 2j37_W Signal recognition part 91.3 0.4 1.4E-05 57.5 8.8 73 983-1055 100-195 (504)
358 2qmh_A HPR kinase/phosphorylas 91.3 0.079 2.7E-06 56.3 2.4 33 983-1016 33-65 (205)
359 3thx_B DNA mismatch repair pro 91.3 0.6 2.1E-05 59.8 10.9 22 985-1006 674-695 (918)
360 1ls1_A Signal recognition part 91.3 1 3.4E-05 50.1 11.5 73 983-1055 97-192 (295)
361 1j8m_F SRP54, signal recogniti 91.2 0.71 2.4E-05 51.4 10.2 72 984-1055 98-192 (297)
362 2xxa_A Signal recognition part 91.1 0.48 1.6E-05 55.7 9.0 73 982-1054 98-194 (433)
363 3c8u_A Fructokinase; YP_612366 91.0 0.11 3.9E-06 54.0 3.4 27 983-1009 21-47 (208)
364 1ex7_A Guanylate kinase; subst 90.7 0.17 5.9E-06 52.7 4.4 24 986-1009 3-26 (186)
365 1lvg_A Guanylate kinase, GMP k 90.7 0.13 4.5E-06 53.4 3.5 26 984-1009 4-29 (198)
366 3gmt_A Adenylate kinase; ssgci 90.7 0.17 5.8E-06 54.7 4.4 31 985-1015 9-39 (230)
367 1gtv_A TMK, thymidylate kinase 90.6 0.075 2.6E-06 54.9 1.4 24 986-1009 2-25 (214)
368 3bor_A Human initiation factor 90.5 0.64 2.2E-05 49.2 8.6 55 945-1002 29-85 (237)
369 1tf7_A KAIC; homohexamer, hexa 90.4 1.1 3.6E-05 53.7 11.5 73 983-1055 280-383 (525)
370 1x6v_B Bifunctional 3'-phospho 90.4 0.18 6.3E-06 61.8 4.9 33 985-1017 53-88 (630)
371 3a00_A Guanylate kinase, GMP k 90.4 0.15 5.2E-06 52.1 3.5 24 986-1009 3-26 (186)
372 1tf7_A KAIC; homohexamer, hexa 90.3 1.1 3.8E-05 53.6 11.5 35 983-1017 38-76 (525)
373 2ffh_A Protein (FFH); SRP54, s 90.3 1.2 4.1E-05 52.2 11.5 73 983-1055 97-192 (425)
374 3hdt_A Putative kinase; struct 90.2 0.17 5.9E-06 54.2 3.9 30 985-1014 15-44 (223)
375 3pey_A ATP-dependent RNA helic 90.2 0.64 2.2E-05 51.8 8.7 20 985-1004 45-64 (395)
376 1um8_A ATP-dependent CLP prote 90.0 0.24 8.3E-06 56.2 5.1 68 462-531 27-109 (376)
377 2v3c_C SRP54, signal recogniti 89.9 0.24 8.1E-06 58.3 5.1 35 984-1018 99-136 (432)
378 1q0u_A Bstdead; DEAD protein, 89.9 0.91 3.1E-05 47.1 9.0 18 985-1002 42-59 (219)
379 3ber_A Probable ATP-dependent 89.7 1.1 3.8E-05 47.9 9.8 18 985-1002 81-98 (249)
380 3lxx_A GTPase IMAP family memb 89.7 1.5 5E-05 46.3 10.6 23 985-1007 30-52 (239)
381 3iuy_A Probable ATP-dependent 89.7 1.2 4.1E-05 46.4 9.8 18 985-1002 58-75 (228)
382 3fe2_A Probable ATP-dependent 89.6 0.81 2.8E-05 48.4 8.6 18 985-1002 67-84 (242)
383 3thx_A DNA mismatch repair pro 89.6 0.97 3.3E-05 58.0 10.7 21 985-1005 663-683 (934)
384 1c9k_A COBU, adenosylcobinamid 89.5 0.33 1.1E-05 50.5 5.3 32 987-1019 2-33 (180)
385 1njg_A DNA polymerase III subu 89.3 0.28 9.5E-06 50.2 4.5 41 702-745 124-164 (250)
386 1l8q_A Chromosomal replication 89.2 0.34 1.2E-05 53.7 5.5 34 491-526 36-72 (324)
387 3tbk_A RIG-I helicase domain; 89.2 1.3 4.5E-05 51.7 10.8 23 985-1007 20-42 (555)
388 1htw_A HI0065; nucleotide-bind 89.0 0.26 8.9E-06 49.9 4.0 26 983-1008 32-57 (158)
389 1wb9_A DNA mismatch repair pro 89.0 2.4 8E-05 53.6 13.4 25 983-1007 606-630 (800)
390 2gza_A Type IV secretion syste 88.9 0.39 1.4E-05 54.8 5.9 69 985-1053 176-262 (361)
391 4eaq_A DTMP kinase, thymidylat 88.9 0.26 8.8E-06 52.7 4.1 31 985-1015 27-59 (229)
392 3b9q_A Chloroplast SRP recepto 88.9 0.44 1.5E-05 53.2 6.1 26 983-1008 99-124 (302)
393 3lxw_A GTPase IMAP family memb 88.9 1.4 4.7E-05 47.3 9.8 25 983-1007 20-44 (247)
394 1a7j_A Phosphoribulokinase; tr 88.8 0.15 5.2E-06 56.5 2.3 37 985-1021 6-45 (290)
395 3ice_A Transcription terminati 88.8 0.76 2.6E-05 53.5 8.0 24 985-1008 175-198 (422)
396 1znw_A Guanylate kinase, GMP k 88.7 0.26 8.8E-06 51.2 3.8 25 985-1009 21-45 (207)
397 1wp9_A ATP-dependent RNA helic 88.6 1.2 4.1E-05 50.4 9.6 32 986-1017 25-60 (494)
398 3ney_A 55 kDa erythrocyte memb 88.6 0.26 8.9E-06 52.0 3.8 25 985-1009 20-44 (197)
399 2jeo_A Uridine-cytidine kinase 88.5 0.29 9.9E-06 52.3 4.1 27 985-1011 26-52 (245)
400 3p32_A Probable GTPase RV1496/ 88.5 0.91 3.1E-05 51.5 8.5 32 985-1016 80-114 (355)
401 1z6g_A Guanylate kinase; struc 88.5 0.26 8.9E-06 52.0 3.7 24 985-1008 24-47 (218)
402 2oxc_A Probable ATP-dependent 88.5 1.5 5.1E-05 46.0 9.5 53 946-1001 24-78 (230)
403 1xti_A Probable ATP-dependent 88.2 3.4 0.00012 46.0 12.9 21 985-1005 46-66 (391)
404 2zj8_A DNA helicase, putative 88.2 2.1 7.2E-05 52.9 12.1 19 984-1002 39-57 (720)
405 1r8s_A ADP-ribosylation factor 88.2 6.3 0.00022 37.9 13.3 22 986-1007 2-23 (164)
406 3bos_A Putative DNA replicatio 87.9 0.59 2E-05 48.3 5.9 26 492-519 52-77 (242)
407 2fwr_A DNA repair protein RAD2 87.8 0.36 1.2E-05 56.2 4.7 33 986-1018 110-142 (472)
408 1s2m_A Putative ATP-dependent 87.7 2 6.7E-05 48.3 10.5 56 946-1004 21-78 (400)
409 1odf_A YGR205W, hypothetical 3 87.6 0.23 8E-06 55.1 2.7 27 983-1009 30-56 (290)
410 1zd9_A ADP-ribosylation factor 87.5 1.8 6.3E-05 43.4 9.2 24 984-1007 22-45 (188)
411 2v9p_A Replication protein E1; 87.3 0.35 1.2E-05 54.3 4.0 30 983-1012 125-154 (305)
412 1s96_A Guanylate kinase, GMP k 87.3 0.35 1.2E-05 51.5 3.8 26 984-1009 16-41 (219)
413 2gj8_A MNME, tRNA modification 87.2 0.83 2.8E-05 45.6 6.4 24 984-1007 4-27 (172)
414 1g8p_A Magnesium-chelatase 38 87.2 2.2 7.6E-05 47.1 10.5 52 450-520 20-71 (350)
415 1p5z_B DCK, deoxycytidine kina 87.2 0.16 5.6E-06 54.8 1.2 31 983-1013 23-54 (263)
416 2ocp_A DGK, deoxyguanosine kin 87.2 0.39 1.3E-05 51.0 4.1 27 985-1011 3-30 (241)
417 1m8p_A Sulfate adenylyltransfe 87.2 0.42 1.4E-05 58.2 4.8 35 985-1019 397-435 (573)
418 3k53_A Ferrous iron transport 87.1 0.83 2.8E-05 49.5 6.8 23 985-1007 4-26 (271)
419 2v1u_A Cell division control p 87.1 1.7 5.8E-05 48.3 9.5 55 690-746 118-176 (387)
420 1xjc_A MOBB protein homolog; s 86.9 0.65 2.2E-05 47.8 5.4 32 985-1016 5-39 (169)
421 4edh_A DTMP kinase, thymidylat 86.8 0.58 2E-05 49.6 5.2 32 985-1016 7-41 (213)
422 3tqf_A HPR(Ser) kinase; transf 86.7 0.49 1.7E-05 49.3 4.3 28 984-1012 16-43 (181)
423 2ged_A SR-beta, signal recogni 86.7 0.66 2.3E-05 46.6 5.3 26 983-1008 47-72 (193)
424 2og2_A Putative signal recogni 86.6 0.69 2.4E-05 53.1 6.0 26 983-1008 156-181 (359)
425 2va8_A SSO2462, SKI2-type heli 86.6 2.7 9.3E-05 51.8 11.7 20 984-1003 46-65 (715)
426 3kta_A Chromosome segregation 86.4 0.39 1.3E-05 48.4 3.4 24 986-1009 28-51 (182)
427 3lnc_A Guanylate kinase, GMP k 86.3 0.26 8.9E-06 52.0 2.1 24 985-1008 28-52 (231)
428 3h1t_A Type I site-specific re 86.0 1.5 5.1E-05 52.8 8.8 24 985-1008 199-222 (590)
429 2chg_A Replication factor C sm 85.6 0.49 1.7E-05 47.9 3.7 41 702-745 100-140 (226)
430 3eiq_A Eukaryotic initiation f 85.5 1.4 4.6E-05 49.7 7.7 56 944-1002 38-95 (414)
431 1bif_A 6-phosphofructo-2-kinas 85.5 0.28 9.6E-06 57.9 2.1 26 985-1010 40-65 (469)
432 1rj9_A FTSY, signal recognitio 85.5 0.51 1.8E-05 52.8 4.1 25 984-1008 102-126 (304)
433 1sq5_A Pantothenate kinase; P- 85.5 0.43 1.5E-05 53.2 3.4 25 985-1009 81-105 (308)
434 3aez_A Pantothenate kinase; tr 85.4 0.5 1.7E-05 53.0 4.0 27 983-1009 89-115 (312)
435 2qm8_A GTPase/ATPase; G protei 85.3 1.5 5E-05 49.6 7.8 25 984-1008 55-79 (337)
436 2orv_A Thymidine kinase; TP4A 85.2 2.5 8.5E-05 45.8 9.1 31 986-1016 21-54 (234)
437 2v6i_A RNA helicase; membrane, 84.7 0.96 3.3E-05 52.7 6.1 17 985-1001 3-19 (431)
438 4i1u_A Dephospho-COA kinase; s 84.6 0.47 1.6E-05 50.5 3.1 30 986-1016 11-40 (210)
439 2gk6_A Regulator of nonsense t 84.5 0.46 1.6E-05 58.2 3.4 23 986-1008 197-219 (624)
440 1fzq_A ADP-ribosylation factor 84.4 1.9 6.6E-05 43.1 7.5 24 984-1007 16-39 (181)
441 2r44_A Uncharacterized protein 84.3 3.8 0.00013 45.2 10.5 33 493-527 47-79 (331)
442 3iby_A Ferrous iron transport 84.3 1.3 4.5E-05 47.9 6.6 22 986-1007 3-24 (256)
443 2dyk_A GTP-binding protein; GT 84.3 0.57 2E-05 45.2 3.4 23 985-1007 2-24 (161)
444 3v9p_A DTMP kinase, thymidylat 84.2 0.68 2.3E-05 49.7 4.2 32 985-1016 26-64 (227)
445 2p67_A LAO/AO transport system 84.2 2.3 7.8E-05 48.0 8.7 25 984-1008 56-80 (341)
446 3fmp_B ATP-dependent RNA helic 84.1 1.3 4.4E-05 51.7 6.8 18 984-1001 131-148 (479)
447 1upt_A ARL1, ADP-ribosylation 84.0 0.72 2.5E-05 44.9 4.0 25 983-1007 6-30 (171)
448 1nrj_B SR-beta, signal recogni 84.0 0.65 2.2E-05 47.8 3.8 24 985-1008 13-36 (218)
449 3tif_A Uncharacterized ABC tra 83.9 0.51 1.8E-05 50.6 3.1 26 983-1008 30-55 (235)
450 1np6_A Molybdopterin-guanine d 83.9 0.59 2E-05 48.1 3.4 24 985-1008 7-30 (174)
451 2cbz_A Multidrug resistance-as 83.9 0.52 1.8E-05 50.7 3.1 26 983-1008 30-55 (237)
452 3tqc_A Pantothenate kinase; bi 83.9 0.79 2.7E-05 51.8 4.7 26 984-1009 92-117 (321)
453 4a2p_A RIG-I, retinoic acid in 83.6 3.1 0.00011 48.7 9.9 23 985-1007 23-45 (556)
454 3vkw_A Replicase large subunit 83.6 0.65 2.2E-05 54.8 4.0 22 985-1006 162-183 (446)
455 3tmk_A Thymidylate kinase; pho 83.3 0.98 3.3E-05 48.1 4.9 32 985-1016 6-37 (216)
456 2f9l_A RAB11B, member RAS onco 83.3 0.61 2.1E-05 47.5 3.2 23 985-1007 6-28 (199)
457 3cr8_A Sulfate adenylyltranfer 83.3 0.48 1.7E-05 57.4 2.8 37 984-1020 369-409 (552)
458 2pcj_A ABC transporter, lipopr 83.3 0.48 1.6E-05 50.4 2.5 24 985-1008 31-54 (224)
459 1lw7_A Transcriptional regulat 83.2 0.66 2.3E-05 52.7 3.7 27 985-1011 171-197 (365)
460 2onk_A Molybdate/tungstate ABC 83.0 0.65 2.2E-05 50.1 3.4 24 985-1008 25-48 (240)
461 1z2a_A RAS-related protein RAB 82.9 0.71 2.4E-05 44.7 3.4 23 985-1007 6-28 (168)
462 2hf9_A Probable hydrogenase ni 82.9 1.2 4.1E-05 46.1 5.3 24 985-1008 39-62 (226)
463 1oix_A RAS-related protein RAB 82.9 0.61 2.1E-05 47.4 3.0 24 985-1008 30-53 (191)
464 2wsm_A Hydrogenase expression/ 82.8 0.8 2.7E-05 47.3 4.0 25 985-1009 31-55 (221)
465 2p65_A Hypothetical protein PF 82.8 1.7 5.7E-05 42.9 6.1 53 689-745 102-160 (187)
466 1u8z_A RAS-related protein RAL 82.8 0.7 2.4E-05 44.5 3.3 23 985-1007 5-27 (168)
467 1mv5_A LMRA, multidrug resista 82.8 0.6 2.1E-05 50.2 3.1 26 983-1008 27-52 (243)
468 3ly5_A ATP-dependent RNA helic 82.7 2.4 8.3E-05 45.6 7.8 18 985-1002 92-109 (262)
469 3a1s_A Iron(II) transport prot 82.6 1.7 5.9E-05 47.0 6.6 22 985-1006 6-27 (258)
470 3b1v_A Ferrous iron uptake tra 82.5 1.7 5.8E-05 47.6 6.6 23 985-1007 4-26 (272)
471 3b85_A Phosphate starvation-in 82.5 0.49 1.7E-05 50.0 2.2 23 985-1007 23-45 (208)
472 3dkp_A Probable ATP-dependent 82.4 2.2 7.4E-05 45.0 7.2 17 985-1001 67-83 (245)
473 2ce2_X GTPase HRAS; signaling 82.4 0.73 2.5E-05 44.2 3.2 24 985-1008 4-27 (166)
474 1kao_A RAP2A; GTP-binding prot 82.4 0.76 2.6E-05 44.2 3.4 23 985-1007 4-26 (167)
475 1ewq_A DNA mismatch repair pro 82.4 1.8 6.1E-05 54.4 7.5 23 985-1007 577-599 (765)
476 3def_A T7I23.11 protein; chlor 82.4 3.9 0.00013 44.0 9.3 23 985-1007 37-59 (262)
477 1b0u_A Histidine permease; ABC 82.3 0.64 2.2E-05 50.7 3.1 24 985-1008 33-56 (262)
478 4ag6_A VIRB4 ATPase, type IV s 82.3 1.1 3.8E-05 51.1 5.2 34 984-1017 35-71 (392)
479 3l9o_A ATP-dependent RNA helic 82.3 2.5 8.7E-05 55.2 9.1 21 985-1005 200-220 (1108)
480 1ko7_A HPR kinase/phosphatase; 82.2 0.76 2.6E-05 51.9 3.7 30 983-1013 143-172 (314)
481 2zu0_C Probable ATP-dependent 82.2 0.75 2.6E-05 50.3 3.6 25 983-1007 45-69 (267)
482 2qby_A CDC6 homolog 1, cell di 82.1 8.2 0.00028 42.6 12.1 54 690-745 116-171 (386)
483 2ghi_A Transport protein; mult 82.0 0.67 2.3E-05 50.5 3.1 26 983-1008 45-70 (260)
484 2lkc_A Translation initiation 81.9 0.99 3.4E-05 44.3 4.1 23 984-1006 8-30 (178)
485 1g8f_A Sulfate adenylyltransfe 81.9 0.68 2.3E-05 55.6 3.3 26 985-1010 396-421 (511)
486 1sgw_A Putative ABC transporte 81.9 0.59 2E-05 49.7 2.5 24 985-1008 36-59 (214)
487 1ek0_A Protein (GTP-binding pr 81.9 0.82 2.8E-05 44.3 3.4 24 985-1008 4-27 (170)
488 2f1r_A Molybdopterin-guanine d 81.9 0.53 1.8E-05 48.3 2.1 23 986-1008 4-26 (171)
489 2d2e_A SUFC protein; ABC-ATPas 81.9 0.72 2.4E-05 49.9 3.2 23 985-1007 30-52 (250)
490 3sop_A Neuronal-specific septi 81.8 0.75 2.6E-05 50.4 3.4 23 986-1008 4-26 (270)
491 3i8s_A Ferrous iron transport 81.7 2.5 8.4E-05 46.1 7.5 23 985-1007 4-26 (274)
492 2pze_A Cystic fibrosis transme 81.6 0.64 2.2E-05 49.6 2.7 25 984-1008 34-58 (229)
493 1g6h_A High-affinity branched- 81.6 0.64 2.2E-05 50.5 2.7 24 985-1008 34-57 (257)
494 1ky3_A GTP-binding protein YPT 81.5 0.81 2.8E-05 44.9 3.3 24 984-1007 8-31 (182)
495 3oiy_A Reverse gyrase helicase 81.5 2.9 0.0001 47.5 8.3 20 985-1004 37-56 (414)
496 2ixe_A Antigen peptide transpo 81.5 0.71 2.4E-05 50.6 3.1 26 983-1008 44-69 (271)
497 2e87_A Hypothetical protein PH 81.3 7.2 0.00025 44.0 11.4 24 984-1007 167-190 (357)
498 1z0j_A RAB-22, RAS-related pro 81.3 0.87 3E-05 44.2 3.4 24 985-1008 7-30 (170)
499 2olj_A Amino acid ABC transpor 81.2 0.74 2.5E-05 50.4 3.1 24 985-1008 51-74 (263)
500 2ff7_A Alpha-hemolysin translo 81.2 0.67 2.3E-05 50.1 2.7 25 984-1008 35-59 (247)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=9.9e-61 Score=593.44 Aligned_cols=488 Identities=28% Similarity=0.454 Sum_probs=375.0
Q ss_pred cccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecC
Q 001031 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (1183)
Q Consensus 449 ~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs~ 528 (1183)
-+|+|+..--+ ++.|..|.+.....|+|+++ |.+-=-...+.|||.|||| ....+||||+|+++++.++.+|..
T Consensus 199 ~~v~~~dIgGl--~~~~~~l~e~v~~pl~~p~~--f~~~g~~~p~GILL~GPPG--TGKT~LAraiA~elg~~~~~v~~~ 272 (806)
T 3cf2_A 199 NEVGYDDIGGC--RKQLAQIKEMVELPLRHPAL--FKAIGVKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLINGP 272 (806)
T ss_dssp SSCCGGGCCSC--CTTHHHHHHHHHHHHHCCGG--GTSCCCCCCCEEEEECCTT--SCHHHHHHHHHTTTTCEEEEEEHH
T ss_pred CCCChhhhcCH--HHHHHHHHHHHHHHccCHHH--HhhcCCCCCCeEEEECCCC--CCHHHHHHHHHHHhCCeEEEEEhH
Confidence 36899999888 99999999999889999887 4442234558899999999 699999999999999999988864
Q ss_pred CCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCceeee
Q 001031 529 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 608 (1183)
Q Consensus 529 ~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~ 608 (1183)
++.+.+.
T Consensus 273 ~l~sk~~------------------------------------------------------------------------- 279 (806)
T 3cf2_A 273 EIMSKLA------------------------------------------------------------------------- 279 (806)
T ss_dssp HHHSSCT-------------------------------------------------------------------------
T ss_pred Hhhcccc-------------------------------------------------------------------------
Confidence 4332211
Q ss_pred ccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhHHH
Q 001031 609 GNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKL 688 (1183)
Q Consensus 609 g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~k~ 688 (1183)
.+...
T Consensus 280 ---------------------------------------------------------------------------gese~ 284 (806)
T 3cf2_A 280 ---------------------------------------------------------------------------GESES 284 (806)
T ss_dssp ---------------------------------------------------------------------------THHHH
T ss_pred ---------------------------------------------------------------------------hHHHH
Confidence 11122
Q ss_pred HHHHHHHHHhhccCCCCEEEEEcChhhhhcC----Chh----hHHHHHHHHhcC--CCCEEEEEeccCCCcccccCCCCC
Q 001031 689 AINELFEVALNESKSSPLIVFVKDIEKSLTG----NND----AYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPGG 758 (1183)
Q Consensus 689 ~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~----~~~----~~~~i~~~L~~L--~g~vivIgs~~~~d~~k~k~~~~~ 758 (1183)
.+..+|+.+.. .+|.||||+|+|.++.. +.+ +.+.|...|+.+ .++|+|||+||
T Consensus 285 ~lr~lF~~A~~---~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN------------- 348 (806)
T 3cf2_A 285 NLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN------------- 348 (806)
T ss_dssp HHHHHHHHHTT---SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECS-------------
T ss_pred HHHHHHHHHHH---cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecC-------------
Confidence 36777777765 89999999999998762 223 333444445555 35899999999
Q ss_pred ceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhhccch
Q 001031 759 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNI 836 (1183)
Q Consensus 759 ~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~I 836 (1183)
.||.+|+ ||+| ||++++++++||..+|.+|
T Consensus 349 -----------------~~d~LD~-------------------------------ALrR~GRFd~~I~i~~Pd~~~R~~I 380 (806)
T 3cf2_A 349 -----------------RPNSIDP-------------------------------ALRRFGRFDREVDIGIPDATGRLEI 380 (806)
T ss_dssp -----------------STTTSCT-------------------------------TTTSTTSSCEEEECCCCCHHHHHHH
T ss_pred -----------------ChhhcCH-------------------------------HHhCCcccceEEecCCCCHHHHHHH
Confidence 6677777 8988 9999999999999999999
Q ss_pred hHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCC-CCcc-eecccchhhhHHHHHhhhhh
Q 001031 837 ISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGK-DAKL-KISTESIMYGLNILQGIQSE 913 (1183)
Q Consensus 837 l~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~-~~kl-~Id~~sIkv~~~dF~~al~e 913 (1183)
+++|+. ...+ .++++..||..|.||+|+||+.||+.|+..|+.|..+.+.. .... ....+++.+...||+.++..
T Consensus 381 L~~~l~--~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~ 458 (806)
T 3cf2_A 381 LQIHTK--NMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 458 (806)
T ss_dssp HHHTCS--SSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSS
T ss_pred HHHHhc--CCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHh
Confidence 999965 2222 78899999999999999999999999999999987654332 1111 11123456677888888777
Q ss_pred hhhhhhhhhcccChhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCC
Q 001031 914 SKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPP 993 (1183)
Q Consensus 914 ikp~~~slk~~v~~~E~ek~ll~~iIp~~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPP 993 (1183)
..|.... .. ....+.++|++|+|++++++.|++.+.+|+.+++.|.+.+ .+++++|||||||
T Consensus 459 ~~ps~~r----------------~~-~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g-~~~~~gvLl~GPP 520 (806)
T 3cf2_A 459 SNPSALR----------------ET-VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPP 520 (806)
T ss_dssp SSCCCCC----------------CC-CCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC-CCCCSCCEEESST
T ss_pred CCCcccc----------------cc-cccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCceEEEecCC
Confidence 6653210 01 1123468999999999999999999999999999998877 4567999999999
Q ss_pred CChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCc--chHHHHHHH
Q 001031 994 GTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKM 1071 (1183)
Q Consensus 994 GTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~--~~~e~l~~i 1071 (1183)
|||||++|++||++++.+|+.+++++++++|+|++++.++.+|..|++..||||||||||.|++.|... ......+++
T Consensus 521 GtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv 600 (806)
T 3cf2_A 521 GCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRV 600 (806)
T ss_dssp TSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHH
T ss_pred CCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887532 334567789
Q ss_pred HHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHH
Q 001031 1072 KNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANM 1149 (1183)
Q Consensus 1072 l~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~ 1149 (1183)
+++|+.+|+++... .+|+||+|||+++.||++++| ||+++|+|++|+.++|.+||+.++.+..+..++++..||+.
T Consensus 601 ~~~lL~~mdg~~~~--~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~ 678 (806)
T 3cf2_A 601 INQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 678 (806)
T ss_dssp HHHHHHHHHSSCSS--SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC---------
T ss_pred HHHHHHHHhCCCCC--CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHh
Confidence 99999999998654 679999999999999999999 99999999999999999999999999888899999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHhHHHHHhh
Q 001031 1150 ADGYSGSDLKNLCVTAAHCPIREILEK 1176 (1183)
Q Consensus 1150 TeGySg~DL~~L~~~Aa~~Aire~le~ 1176 (1183)
|+||||+||.++|++|++.|+++.++.
T Consensus 679 t~g~SGadi~~l~~~A~~~a~r~~~~~ 705 (806)
T 3cf2_A 679 TNGFSGADLTEICQRACKLAIRESIES 705 (806)
T ss_dssp -------CHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998764
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-39 Score=376.84 Aligned_cols=226 Identities=35% Similarity=0.628 Sum_probs=211.2
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001031 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1183)
Q Consensus 944 ~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~ 1023 (1183)
+.++|+||+|+++++++|++.+.+|+.+|++|.+.++ +|++|||||||||||||+||+|+|++++.+|+.++++++.++
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi-~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk 221 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI-AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK 221 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc
Confidence 4789999999999999999999999999999998774 566999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCc--chHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCC
Q 001031 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1183)
Q Consensus 1024 ~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~--~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~ 1101 (1183)
|+|++++.++.+|..|+..+||||||||||.+++++... +......+++++|+..++++... .+|+||+|||+++.
T Consensus 222 ~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 222 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS--KNIKIIMATNRLDI 299 (405)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC--CCEEEEEEESCSSS
T ss_pred ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC--CCeEEEeccCChhh
Confidence 999999999999999999999999999999999877543 33445677889999999998643 68999999999999
Q ss_pred CcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHH
Q 001031 1102 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIRE 1172 (1183)
Q Consensus 1102 Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire 1172 (1183)
||++++| ||++.|+|++|+.++|.+||+.++.+..+..++++..||..|+||||+||+++|++|++.|+++
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~ 372 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999 9999999999999999999999999999889999999999999999999999999999999876
No 3
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=3.2e-41 Score=422.89 Aligned_cols=485 Identities=29% Similarity=0.471 Sum_probs=360.2
Q ss_pred ccccccccccchhhHHHHHHhhhhhhccccccccccCCC-CCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecC
Q 001031 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDL-PTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (1183)
Q Consensus 450 ~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l-~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs~ 528 (1183)
.|+|++.--+ +..+..|.+.....|+|+++ |. +| -.....|||.||+| .-..+||||||+..+..++.++..
T Consensus 200 ~v~~~di~G~--~~~~~~l~e~i~~~l~~~~~--~~-~l~i~~~~~vLL~Gp~G--tGKTtLarala~~l~~~~i~v~~~ 272 (806)
T 1ypw_A 200 EVGYDDVGGC--RKQLAQIKEMVELPLRHPAL--FK-AIGVKPPRGILLYGPPG--TGKTLIARAVANETGAFFFLINGP 272 (806)
T ss_dssp SCCGGGCCSC--SGGGGHHHHHHHHHHHCGGG--GT-SSCCCCCCEEEECSCTT--SSHHHHHHHHHHTTTCEEEEEEHH
T ss_pred CCCHHHhCCh--HHHHHHHHHHHHHHhhCHHH--HH-hcCCCCCCeEEEECcCC--CCHHHHHHHHHHHcCCcEEEEEch
Confidence 5889988777 88888888888888898876 32 23 34567899999999 689999999999998888777643
Q ss_pred CCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCceeee
Q 001031 529 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 608 (1183)
Q Consensus 529 ~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~ 608 (1183)
.+.+.+..
T Consensus 273 ~l~~~~~g------------------------------------------------------------------------ 280 (806)
T 1ypw_A 273 EIMSKLAG------------------------------------------------------------------------ 280 (806)
T ss_dssp HHSSSSTT------------------------------------------------------------------------
T ss_pred Hhhhhhhh------------------------------------------------------------------------
Confidence 22221100
Q ss_pred ccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhHHH
Q 001031 609 GNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKL 688 (1183)
Q Consensus 609 g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~k~ 688 (1183)
.-.-
T Consensus 281 ----------------------------------------------------------------------------~~~~ 284 (806)
T 1ypw_A 281 ----------------------------------------------------------------------------ESES 284 (806)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------hHHH
Confidence 0011
Q ss_pred HHHHHHHHHhhccCCCCEEEEEcChhhhhcC----Chh----hHHHHHHHHhcC--CCCEEEEEeccCCCcccccCCCCC
Q 001031 689 AINELFEVALNESKSSPLIVFVKDIEKSLTG----NND----AYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPGG 758 (1183)
Q Consensus 689 ~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~----~~~----~~~~i~~~L~~L--~g~vivIgs~~~~d~~k~k~~~~~ 758 (1183)
.+..+|+-+.. ..|.||||+|++.++.. +.+ +.+.+...++.+ ...|+||+++|
T Consensus 285 ~l~~vf~~a~~---~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn------------- 348 (806)
T 1ypw_A 285 NLRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN------------- 348 (806)
T ss_dssp HHHHHHHHHHH---HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECS-------------
T ss_pred HHHHHHHHHHh---cCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccC-------------
Confidence 14444555444 57899999999997753 222 333444444444 35899999999
Q ss_pred ceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhhccch
Q 001031 759 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNI 836 (1183)
Q Consensus 759 ~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~I 836 (1183)
.|+.+++ +++| ||++++++.+|+...|.+|
T Consensus 349 -----------------~~~~ld~-------------------------------al~r~gRf~~~i~i~~p~~~~r~~i 380 (806)
T 1ypw_A 349 -----------------RPNSIDP-------------------------------ALRRFGRFDREVDIGIPDATGRLEI 380 (806)
T ss_dssp -----------------CTTTSCT-------------------------------TTTSTTSSCEEECCCCCCHHHHHHH
T ss_pred -----------------CchhcCH-------------------------------HHhcccccccccccCCCCHHHHHHH
Confidence 4455554 4444 6666777777888888888
Q ss_pred hHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceec---ccchhhhHHHHHhhhh
Q 001031 837 ISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKIS---TESIMYGLNILQGIQS 912 (1183)
Q Consensus 837 l~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id---~~sIkv~~~dF~~al~ 912 (1183)
+++|.. ...+ .+.++..++..+.+|.++++..+|..|+..++.+....+.... ..++ ...+.+...+|..++.
T Consensus 381 l~~~~~--~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~-~~~~~~~~~~~~v~~~d~~~al~ 457 (806)
T 1ypw_A 381 LQIHTK--NMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED-ETIDAEVMNSLAVTMDDFRWALS 457 (806)
T ss_dssp HHHTTT--TSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHH-HHCCHHHHTTCCCCTTHHHHHHH
T ss_pred HHHHHh--cCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhh-hccchhhhhhhhhhhhhhhcccc
Confidence 887733 3333 6678999999999999999999999999888876543221100 0000 0111222233333322
Q ss_pred hhhhhhhhhhcccChhHHHHHHhcCCCCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcC
Q 001031 913 ESKSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGP 992 (1183)
Q Consensus 913 eikp~~~slk~~v~~~E~ek~ll~~iIp~~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GP 992 (1183)
...+.. ... .....+.++|++++|++++++.|.+++.+++.+++.|.+.++ .++.++||+||
T Consensus 458 ~~~~s~----------------~~~-~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLL~Gp 519 (806)
T 1ypw_A 458 QSNPSA----------------LRE-TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGP 519 (806)
T ss_dssp HSCCCC----------------CCC-CCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCC-CCCCCCCCBCC
T ss_pred ccCchh----------------hhh-hcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCC-CCCceeEEECC
Confidence 221100 000 111223678999999999999999999999999998887664 45688999999
Q ss_pred CCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCc--chHHHHHH
Q 001031 993 PGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRK 1070 (1183)
Q Consensus 993 PGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~--~~~e~l~~ 1070 (1183)
||||||+||++||+.++.+|+.++++++.+.|+|+.+..++.+|..++...|+||||||||.|+..+... .......+
T Consensus 520 pGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~ 599 (806)
T 1ypw_A 520 PGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADR 599 (806)
T ss_dssp TTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998776542 33456788
Q ss_pred HHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHH
Q 001031 1071 MKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIAN 1148 (1183)
Q Consensus 1071 il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~ 1148 (1183)
++++|+..++++... .+++||+|||+++.|+++++| ||+..+++++|+.++|.+||+.++.+..+..+.++..|+.
T Consensus 600 v~~~LL~~ld~~~~~--~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~ 677 (806)
T 1ypw_A 600 VINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAK 677 (806)
T ss_dssp HHHHHHTTCC--------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCG
T ss_pred HHHHHHHHHhccccc--CCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHH
Confidence 999999999987543 679999999999999999999 9999999999999999999999998888888889999999
Q ss_pred HcCCCcHHHHHHHHHHHHHHhHHHHHhh
Q 001031 1149 MADGYSGSDLKNLCVTAAHCPIREILEK 1176 (1183)
Q Consensus 1149 ~TeGySg~DL~~L~~~Aa~~Aire~le~ 1176 (1183)
.+.||+++||.++|+.|+..|+++.++.
T Consensus 678 ~t~g~sgadi~~l~~~a~~~a~~~~~~~ 705 (806)
T 1ypw_A 678 MTNGFSGADLTEICQRACKLAIRESIES 705 (806)
T ss_dssp GGSSSCCHHHHHHHHHHHHHHHSCC---
T ss_pred hccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987554
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-38 Score=369.79 Aligned_cols=228 Identities=36% Similarity=0.642 Sum_probs=210.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001031 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1183)
Q Consensus 943 e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s 1022 (1183)
.+.++|+||+|+++++++|++.+.+|+.+|+.|.+.++ ++++|||||||||||||+||+|||++++.+|+.++++++.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi-~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI-KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC-CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 35789999999999999999999999999999998874 56699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcc--hHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC
Q 001031 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1183)
Q Consensus 1023 ~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~--~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1183)
+|+|++++.++.+|..|++.+|+||||||||.+++.|.... ......+++.+|+..++++... .+|+||+|||+++
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~--~~ViVIaATNrpd 332 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR--GDVKVIMATNKIE 332 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS--SSEEEEEEESCST
T ss_pred ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC--CCEEEEEeCCChh
Confidence 99999999999999999999999999999999998874332 2334567788999999987643 6799999999999
Q ss_pred CCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
.||++++| ||++.|+|++|+.++|.+||+.++.+..+..+++++.||..|+||||+||++||++|++.|+++.
T Consensus 333 ~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~ 407 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER 407 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999 99999999999999999999999999998899999999999999999999999999999998763
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-38 Score=366.95 Aligned_cols=228 Identities=34% Similarity=0.616 Sum_probs=211.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001031 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1183)
Q Consensus 943 e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s 1022 (1183)
.+.++|+||+|++++++.|++.|.+|+.+|++|.+.++ +|++|||||||||||||+||+|||++++++|+.++++++.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi-~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGI-DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCC-CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 35789999999999999999999999999999998774 56799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCc--chHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC
Q 001031 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1183)
Q Consensus 1023 ~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~--~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1183)
+|+|++++.++.+|..|+..+||||||||||.++..|... +......+++.+++..++++... .+|+||+|||+++
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~ViVIaATNrpd 359 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR--GNIKVMFATNRPN 359 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT--TTEEEEEECSCTT
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC--CcEEEEeCCCCcc
Confidence 9999999999999999999999999999999999877543 33445667888999999987643 6899999999999
Q ss_pred CCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
.||++++| ||++.|+|++|+.++|.+||+.++.+..+..++++..||..|+||||+||++||++|++.|+++.
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~ 434 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR 434 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT
T ss_pred cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999 99999999999999999999999999988889999999999999999999999999999999874
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-38 Score=368.42 Aligned_cols=228 Identities=33% Similarity=0.596 Sum_probs=211.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001031 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1183)
Q Consensus 943 e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s 1022 (1183)
.+.++|+||+|++++++.|++.+.+|+.+|++|.+.++ ++++|||||||||||||+||+|||++++++|+.++++++.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~-~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI-RAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 45789999999999999999999999999999998874 56699999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcch--HHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC
Q 001031 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE--HEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1183)
Q Consensus 1023 ~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~--~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1183)
.|+|++++.++.+|..|+...||||||||||.++++|..... .....+++.+|+..++++... .+|+||||||+++
T Consensus 254 ~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~--~~ViVIaaTNrp~ 331 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD--DRVKVLAATNRVD 331 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS--CSSEEEEECSSCC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC--CCEEEEEeCCCch
Confidence 999999999999999999999999999999999988765332 345567889999999998654 6799999999999
Q ss_pred CCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
.||++++| ||++.|+|++|+.++|.+||+.++.+..+..++++..||..|+||||+||+++|++|++.|+++.
T Consensus 332 ~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~ 406 (434)
T 4b4t_M 332 VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG 406 (434)
T ss_dssp CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999 99999999999999999999999999988899999999999999999999999999999999874
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-38 Score=367.13 Aligned_cols=228 Identities=39% Similarity=0.684 Sum_probs=210.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001031 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1183)
Q Consensus 943 e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s 1022 (1183)
.+.++|+||+|++++++.|++.+.+|+.+|++|.+.++ +|++|||||||||||||+||+|||++++++|+.++++++.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~-~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 35789999999999999999999999999999998884 57799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcc--hHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC
Q 001031 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1183)
Q Consensus 1023 ~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~--~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1183)
+|+|++++.++.+|..|+...||||||||||.++++|...+ ......+++++|+..++++... .+++||+|||+++
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~--~~vivI~ATNrp~ 331 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL--GQTKIIMATNRPD 331 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT--TSSEEEEEESSTT
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC--CCeEEEEecCCch
Confidence 99999999999999999999999999999999998774432 2344567889999999998654 6799999999999
Q ss_pred CCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
.||++++| ||++.|+|++|+.++|.+||+.++.+..+..++|+..||..|+||||+||.++|++|++.|+++.
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~ 406 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDD 406 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999998 69999999999999999999999999988889999999999999999999999999999998763
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-37 Score=362.21 Aligned_cols=228 Identities=37% Similarity=0.610 Sum_probs=210.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001031 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1183)
Q Consensus 943 e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s 1022 (1183)
.+.++|+||+|++++++.|++.+.+|+.+|+.|.+.++ .|++|||||||||||||+||+|||++++++|+.++++++.+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~-~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI-DPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 34789999999999999999999999999999998874 56799999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCc--chHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC
Q 001031 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1183)
Q Consensus 1023 ~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~--~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1183)
.|+|+++..++.+|..|+...||||||||+|.+++.|... .......+++++|+..++|+... .+++||||||+++
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~--~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS--TNVKVIMATNRAD 322 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS--CSEEEEEEESCSS
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC--CCEEEEEecCChh
Confidence 9999999999999999999999999999999999877432 22335577889999999998654 6799999999999
Q ss_pred CCcHHHHh--ccCcEEEec-CCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1101 DLDEAVVR--RLPRRLMVN-LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~-lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
.||++++| ||++.|+|+ +|+.++|..||+.++.+..+..++++..||..|+||||+||.++|++|++.|+++.
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~ 398 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN 398 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 99999999 999999995 89999999999999999988899999999999999999999999999999999863
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=6.3e-34 Score=353.77 Aligned_cols=230 Identities=42% Similarity=0.665 Sum_probs=213.4
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001031 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1183)
Q Consensus 944 ~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~ 1023 (1183)
+.++|+||+|+++++++|++.+.+|+.+|++|.+.+ .+|++|||||||||||||+||++||++++.+|+.++++++.++
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g-~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIG-VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCC-CCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcC-CCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 468999999999999999999999999999999877 4577999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCc
Q 001031 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1183)
Q Consensus 1024 ~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld 1103 (1183)
|.|++++.++.+|..|++++|+||||||||.|++++.... .+..++++++|+..|+++... .+|+||+|||+++.||
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~-~~~~~riv~~LL~~mdg~~~~--~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSID 354 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC-CTTHHHHHHHHHTHHHHCCGG--GCEEEEEECSSTTTSC
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC-ChHHHHHHHHHHHHHhccccc--CCEEEEEecCChhhcC
Confidence 9999999999999999999999999999999998775433 334577899999999998654 6799999999999999
Q ss_pred HHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHhhh
Q 001031 1104 EAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEKE 1177 (1183)
Q Consensus 1104 ~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~le~e 1177 (1183)
++++| ||++.|++++|+.++|.+||+.++.+..+..++++..||..|+||+|+||.+||++|++.|+++.....
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i 430 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 430 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 99999 999999999999999999999999998888999999999999999999999999999999999987543
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=2e-31 Score=301.14 Aligned_cols=229 Identities=43% Similarity=0.762 Sum_probs=207.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecCcccc
Q 001031 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITS 1022 (1183)
Q Consensus 944 ~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-g~pfi~I~~s~L~s 1022 (1183)
+.++|+||+|++.+++.|++.+.+|+.++++|... ..|+++|||+||||||||+||+++|+++ +.+|+.++++++.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT--CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCC--CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 46799999999999999999999999999998742 5677899999999999999999999999 99999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCC
Q 001031 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1183)
Q Consensus 1023 ~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~L 1102 (1183)
.|.|..++.++.+|..++..+|+||||||||.+.+.+... ......+++++|+..++++.. ...+++||+|||.++.|
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~-~~~~v~vI~atn~~~~l 162 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVL 162 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSS-CCTTEEEEEEESCTTTS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc-cchHHHHHHHHHHHHHhcccc-cCCCEEEEEecCCcccC
Confidence 9999999999999999999999999999999998766543 345567888999999998753 24789999999999999
Q ss_pred cHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHhh
Q 001031 1103 DEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEK 1176 (1183)
Q Consensus 1103 d~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~le~ 1176 (1183)
+++++|||+..+.+++|+.++|.+|++.++...... .+.++..|+..++||+|+||.+||++|++.++++....
T Consensus 163 d~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~ 237 (322)
T 1xwi_A 163 DSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSA 237 (322)
T ss_dssp CHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHC
T ss_pred CHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999876654 78899999999999999999999999999999998754
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.97 E-value=9.7e-31 Score=294.57 Aligned_cols=229 Identities=44% Similarity=0.760 Sum_probs=204.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001031 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1183)
Q Consensus 944 ~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~ 1023 (1183)
+.++|++|+|++.+++.|++.+.+|+.+++.|... ..|+++|||+||||||||+||+++|++++.+|+.++++++.+.
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 90 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN--RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 90 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTT--CCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcC--CCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc
Confidence 46789999999999999999999999999988764 4677899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCc
Q 001031 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1183)
Q Consensus 1024 ~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld 1103 (1183)
+.|..+..++.+|..++...|+||||||||.|.+.+.. .......++.++++..++++.. ...+++||+|||.++.|+
T Consensus 91 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~atn~~~~ld 168 (322)
T 3eie_A 91 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQMNGVGN-DSQGVLVLGATNIPWQLD 168 (322)
T ss_dssp TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-------CCTHHHHHHHHHHHGGGGT-SCCCEEEEEEESCGGGSC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCC-CcchHHHHHHHHHHHHhccccc-cCCceEEEEecCChhhCC
Confidence 99999999999999999999999999999999866533 2333456778889999888753 346799999999999999
Q ss_pred HHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHhh
Q 001031 1104 EAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEK 1176 (1183)
Q Consensus 1104 ~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~le~ 1176 (1183)
+++++||+..+++++|+.++|.+|++.++.+.... .+.++..|+.+++||+++||.+||+.|++.++++..+.
T Consensus 169 ~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~ 242 (322)
T 3eie_A 169 SAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSA 242 (322)
T ss_dssp HHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHC
T ss_pred HHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999887644 78899999999999999999999999999999998765
No 12
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.97 E-value=3.5e-30 Score=294.69 Aligned_cols=232 Identities=43% Similarity=0.749 Sum_probs=199.0
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc
Q 001031 941 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1183)
Q Consensus 941 ~~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L 1020 (1183)
...+..+|++|+|++.+++.|.+.+.+|+.++++|... ..++++|||+||||||||+||+++|++++.+|+.++++++
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~--~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l 120 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN--RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 120 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSS--CCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcC--CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 34456899999999999999999999999999998763 4677899999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC
Q 001031 1021 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1183)
Q Consensus 1021 ~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1183)
.+.+.|..+..++.+|..++...|+||||||||.|.+.+.. .......++.++|+..++++.. ...+++||+|||.++
T Consensus 121 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~-~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 121 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGE-GESEASRRIKTELLVQMNGVGN-DSQGVLVLGATNIPW 198 (355)
T ss_dssp HSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-------CTHHHHHHHHHHHHHHHCC----CCEEEEEEESCGG
T ss_pred hhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCC-CcchHHHHHHHHHHHHhhcccc-cCCCeEEEeecCCcc
Confidence 99999999999999999999999999999999999766543 2344567788889998887653 236799999999999
Q ss_pred CCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccC-CChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHhh
Q 001031 1101 DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEK 1176 (1183)
Q Consensus 1101 ~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l-~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~le~ 1176 (1183)
.|++++++||+..+++++|+.++|.+||+.++..... ..+.++..|+..++||+|+||.+||++|++.|+++....
T Consensus 199 ~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~ 275 (355)
T 2qp9_X 199 QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSA 275 (355)
T ss_dssp GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988764 378899999999999999999999999999999997643
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.97 E-value=3.9e-30 Score=287.22 Aligned_cols=230 Identities=43% Similarity=0.733 Sum_probs=202.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001031 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1183)
Q Consensus 944 ~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~ 1023 (1183)
+.++|++|+|++.+++.|++.+.+|+.+++.|...++ .++.++||+||||||||+||++||++++.+|+.++++++.+.
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC-CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 4678999999999999999999999999999987664 456899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCc--chHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCC
Q 001031 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1183)
Q Consensus 1024 ~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~--~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~ 1101 (1183)
++|..+..++.+|..+....|+||||||||.+...+... .......+++++++..++++.. ..+++||+|||.++.
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~--~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNRPDI 166 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT--TSSEEEEEEESCGGG
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC--CCCEEEEEecCCccc
Confidence 999999999999999999999999999999987543211 0011223566778888887653 367999999999999
Q ss_pred CcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHhh
Q 001031 1102 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEK 1176 (1183)
Q Consensus 1102 Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~le~ 1176 (1183)
|+++++| ||+..+++++|+.++|.+|++.++.+..+..++++..++..+.||+|+||+++|+.|++.++++.+..
T Consensus 167 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~ 243 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIES 243 (301)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999 99999999999999999999999998887788899999999999999999999999999999988643
No 14
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.97 E-value=1.4e-29 Score=298.08 Aligned_cols=234 Identities=43% Similarity=0.749 Sum_probs=199.6
Q ss_pred CCCCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEec
Q 001031 939 IPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-GANFINISM 1017 (1183)
Q Consensus 939 Ip~~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-g~pfi~I~~ 1017 (1183)
+....+.++|+||+|++.+++.|.+.+.+|+.++++|... ..|+++|||+||||||||+||++||+++ +.+|+.+++
T Consensus 124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~--~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~ 201 (444)
T 2zan_A 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK--RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 201 (444)
T ss_dssp CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGG--GCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECC
T ss_pred eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhcc--CCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeH
Confidence 3344557899999999999999999999999999988642 4567899999999999999999999999 899999999
Q ss_pred CccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecC
Q 001031 1018 SSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1097 (1183)
Q Consensus 1018 s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN 1097 (1183)
+++.+.|.|..+..++.+|..++...|+||||||||.|++.+... ......++.++|+..++++.. ...+++||+|||
T Consensus 202 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~lL~~l~~~~~-~~~~v~vI~atn 279 (444)
T 2zan_A 202 SDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGV-DNDGILVLGATN 279 (444)
T ss_dssp C---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC-CCGGGHHHHHHHHTTTTCSSC-CCSSCEEEEEES
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc-cccHHHHHHHHHHHHHhCccc-CCCCEEEEecCC
Confidence 999999999999999999999999999999999999998766543 334566788999999988753 247899999999
Q ss_pred CCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccC-CChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHhh
Q 001031 1098 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILEK 1176 (1183)
Q Consensus 1098 ~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l-~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~le~ 1176 (1183)
.++.|+++++|||+.++.+++|+.++|..||+.++..... ..+.++..|+..++||+|+||.+||+.|++.++++.+..
T Consensus 280 ~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~ 359 (444)
T 2zan_A 280 IPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSA 359 (444)
T ss_dssp CGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHC
T ss_pred CccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999987654 378899999999999999999999999999999998754
No 15
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.96 E-value=1.6e-29 Score=279.73 Aligned_cols=227 Identities=41% Similarity=0.686 Sum_probs=190.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~ 1024 (1183)
.++|+||+|++++++.|++.+.+|+.+++.|...++. +++|+||+||||||||+|+++||..++.+++.+++.++...+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~-~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLV-TPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY 84 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCC-CCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence 5789999999999999999999999999999887754 457899999999999999999999999999999999998888
Q ss_pred ccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcH
Q 001031 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1104 (1183)
Q Consensus 1025 ~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~ 1104 (1183)
.++.++.++.+|..+....|+|+|+||||.++..+... ......++.++++..+++... ...++++++||+++.||+
T Consensus 85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~-~~~~~~~~~~~~l~~Lsgg~~--~~~~i~ia~tn~p~~LD~ 161 (274)
T 2x8a_A 85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR-ETGASVRVVNQLLTEMDGLEA--RQQVFIMAATNRPDIIDP 161 (274)
T ss_dssp THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----------CTTHHHHHHHHHHTCCS--TTCEEEEEEESCGGGSCH
T ss_pred hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC-cchHHHHHHHHHHHhhhcccc--cCCEEEEeecCChhhCCH
Confidence 88889999999999988899999999999987554321 122334567888888988753 367899999999999999
Q ss_pred HHHh--ccCcEEEecCCCHHHHHHHHHHHHhh---ccCCChhhHHHHHHHc--CCCcHHHHHHHHHHHHHHhHHHHHh
Q 001031 1105 AVVR--RLPRRLMVNLPDAPNREKIIRVILAK---EELASDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIREILE 1175 (1183)
Q Consensus 1105 aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k---~~l~~didl~~LA~~T--eGySg~DL~~L~~~Aa~~Aire~le 1175 (1183)
+++| ||++.+++++|+.++|.+||+.+++. ..+..++++..||..+ +||+|+||.+||++|++.|+++.+.
T Consensus 162 al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 162 AILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239 (274)
T ss_dssp HHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999 99999999999999999999999864 3456788999999875 5999999999999999999998643
No 16
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=272.12 Aligned_cols=227 Identities=47% Similarity=0.844 Sum_probs=197.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001031 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1183)
Q Consensus 944 ~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~ 1023 (1183)
...+|++|+|++.+++.|.+.+.+|+.+++.|... ..++++|||+||||||||+||++||++++.+|+.++++++...
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL--RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG--GSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhc--cCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 35789999999999999999999999888887654 3567899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCc
Q 001031 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1183)
Q Consensus 1024 ~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld 1103 (1183)
+.|..+..++.+|..+....|+||||||||.|.+.+.. .......+++++++..+++.......+++||+|||.++.|+
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~-~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~ 235 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD-GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEID 235 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC-CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCC
Confidence 99999999999999999999999999999999866543 23445667888899999887655567899999999999999
Q ss_pred HHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1104 EAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1104 ~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
+++++||...+.+++|+.++|.++++.++....+. .+.++..|+..++||+++||..||+.|+..+++++
T Consensus 236 ~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l 306 (357)
T 3d8b_A 236 EAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSL 306 (357)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHC
T ss_pred HHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999876543 67789999999999999999999999999999865
No 17
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=3e-27 Score=259.31 Aligned_cols=226 Identities=43% Similarity=0.747 Sum_probs=199.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~ 1024 (1183)
..+|++|+|++.+++.|.+.+..++.+++.|.+.++ .++.++||+||||||||+||+++|+.++.+++.+++.++...+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 91 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGI-EPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKF 91 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCC-CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCS
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhc
Confidence 578999999999999999999999999999988764 4558899999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCc--chHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCC
Q 001031 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1183)
Q Consensus 1025 ~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~--~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~L 1102 (1183)
.|..+..++.+|..+....|+||||||||.+.+++... .........+..++..+++... ..+++||+|||.++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 92 IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA--RGDVKIIGATNRPDIL 169 (285)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS--SSSEEEEEECSCGGGB
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEeCCCchhc
Confidence 99999999999999999999999999999998765432 1222334555666777766543 3579999999999999
Q ss_pred cHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1103 DEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1103 d~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
++++++ ||+.++.++.|+.++|.+|++.++....+..+.++..++..+.||++++|..+|+.|+..|+++.
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~ 242 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL 242 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999 99999999999999999999999988887788899999999999999999999999999987763
No 18
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.95 E-value=2.2e-27 Score=281.37 Aligned_cols=226 Identities=42% Similarity=0.643 Sum_probs=196.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001031 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1183)
Q Consensus 943 e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s 1022 (1183)
....+|+||+|++++++++++.+.. +..++.|.+.+. ++++++||+||||||||+||++||.+++.+|+.++++++..
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~-~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~ 87 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGA-RMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVE 87 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTC-CCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTT
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCC-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHH
Confidence 4578999999999999999998875 567777877664 45588999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCc--chHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC
Q 001031 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1183)
Q Consensus 1023 ~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~--~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1183)
.+.|.....++.+|..|....|+||||||||.+...+... +......+++++++..++++.. ..+++||++||.++
T Consensus 88 ~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~--~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 88 LFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS--KEGIIVMAATNRPD 165 (476)
T ss_dssp CCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG--GGTEEEEEEESCGG
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC--CCCEEEEEecCChh
Confidence 9999889999999999999999999999999997665421 2223345677888888887654 36799999999999
Q ss_pred CCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHH
Q 001031 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIRE 1172 (1183)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire 1172 (1183)
.|+++++| ||++.+.+++|+.++|.+|++.++.+..+..++++..|+..+.||+|+||.++|++|+..+.++
T Consensus 166 ~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~ 239 (476)
T 2ce7_A 166 ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE 239 (476)
T ss_dssp GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHc
Confidence 99999998 9999999999999999999999999888888888999999999999999999999999988754
No 19
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.95 E-value=3.3e-27 Score=256.18 Aligned_cols=226 Identities=41% Similarity=0.628 Sum_probs=192.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001031 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1183)
Q Consensus 943 e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s 1022 (1183)
.+..+|++|+|++.+++.+.+.+.. +.+++.|...+. .+++++||+||||||||+||+++|+.++.+++.+++.++..
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 3467899999999999999988765 666666665543 34578999999999999999999999999999999999988
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCc--chHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC
Q 001031 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1183)
Q Consensus 1023 ~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~--~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1183)
.+.+..+..++.+|..+....|+||||||||.+...+... ........+++.++..++++.. ..+++||+|||.++
T Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 84 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPD 161 (257)
T ss_dssp SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS--SSCEEEEEEESCTT
T ss_pred HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc--CCCEEEEEeeCCch
Confidence 8889999999999999999899999999999997655321 1222334567788888887643 36799999999999
Q ss_pred CCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHH
Q 001031 1101 DLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIRE 1172 (1183)
Q Consensus 1101 ~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire 1172 (1183)
.+++++++ ||++.+.+++|+.++|.+|++.++.+..+..+.++..++..+.||+++||.++|+.|+..|.++
T Consensus 162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~ 235 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 235 (257)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999998 9999999999999999999999998888888888999999999999999999999999998765
No 20
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.95 E-value=4.4e-27 Score=259.81 Aligned_cols=228 Identities=50% Similarity=0.842 Sum_probs=194.8
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001031 943 DIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1183)
Q Consensus 943 e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s 1022 (1183)
.+..+|++|+|++.+++.|.+.+..++.++++|... ..++.++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGL--RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGG--GCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcC--CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 346899999999999999999999999888888643 356789999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCccc-CCCCEEEEEecCCCCC
Q 001031 1023 KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-DKERVLVLAATNRPFD 1101 (1183)
Q Consensus 1023 ~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k-~~~~VlVIaTTN~p~~ 1101 (1183)
.+.+..+..++.+|..+....|+||||||+|.+...+... .......+.+.++..+++.... ...+++||++||.++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~ 171 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS-EHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQE 171 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC------CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGG
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC-cchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhh
Confidence 9999999999999999999999999999999998665431 1223345666777777766432 2357999999999999
Q ss_pred CcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccC-CChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1102 LDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1102 Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l-~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
|++++++||+..+.+++|+.++|..|++.++..... ..+.++..|+..+.||+++||.+||+.|+..++++.
T Consensus 172 l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~ 244 (297)
T 3b9p_A 172 LDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIREL 244 (297)
T ss_dssp BCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTC
T ss_pred CCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987654 366789999999999999999999999999999875
No 21
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.95 E-value=2.2e-27 Score=273.91 Aligned_cols=227 Identities=50% Similarity=0.861 Sum_probs=188.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001031 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1183)
Q Consensus 944 ~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~ 1023 (1183)
...+|++|+|++.+++.|.+++..++.+++.|... ..++++|||+||||||||+||++||++++.+|+.+++.++.+.
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGL--RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSK 187 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG--GCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC---
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhccc--CCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcc
Confidence 45789999999999999999999998888887654 3466899999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCc
Q 001031 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD 1103 (1183)
Q Consensus 1024 ~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld 1103 (1183)
+.|..+..++.+|..++...|+||||||||.|+..+.. .......++.++|+..++++......+++||+|||.++.|+
T Consensus 188 ~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~ 266 (389)
T 3vfd_A 188 YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELD 266 (389)
T ss_dssp ----CHHHHHHHHHHHHHSSSEEEEEETGGGGC---------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC-ccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcC
Confidence 99999999999999999999999999999999765532 23334567778888888877655567899999999999999
Q ss_pred HHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1104 EAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1104 ~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
+++++||..++.++.|+.++|.+|++.++...... .+.++..|+..++||++++|..||+.|+..+++++
T Consensus 267 ~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel 337 (389)
T 3vfd_A 267 EAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIREL 337 (389)
T ss_dssp HHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999899999999999999999999875543 56789999999999999999999999999999885
No 22
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.95 E-value=3.4e-27 Score=281.03 Aligned_cols=227 Identities=42% Similarity=0.690 Sum_probs=205.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~ 1024 (1183)
..+|++|+|++.+++.|.+.+..++.++++|...+. .++.+|||+||||||||++|++||++++.+|+.++|+++.+.+
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 357999999999999999999999999999988764 4568999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcH
Q 001031 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1104 (1183)
Q Consensus 1025 ~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~ 1104 (1183)
+|+.+..++.+|..|....|+||||||||.|.+.+... ..+...++...|+..+++... ..+++||+|||.++.|++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~-~~~~~~~~~~~LL~~ld~~~~--~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC-CCHHHHHHHHHHHHHHHHSCT--TSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc-cchHHHHHHHHHHHHhhcccc--CCceEEEEecCCccccCH
Confidence 99999999999999999999999999999998766432 234556788888888887643 367999999999999999
Q ss_pred HHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHh
Q 001031 1105 AVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREILE 1175 (1183)
Q Consensus 1105 aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~le 1175 (1183)
++++ ||+..+.+++|+.++|.+||+.++....+..+.++..++..+.||+++||.+||+.|++.++++..+
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~ 428 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccc
Confidence 9999 9999999999999999999999999888888889999999999999999999999999999988654
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=7e-27 Score=252.27 Aligned_cols=225 Identities=36% Similarity=0.563 Sum_probs=174.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~ 1024 (1183)
.++|++|+|++.+++.|++.+.. +..++.|...+. .+++++||+||||||||++|+++|++++.+++.+++.++...+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGA-KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHH-HHCCC------C-CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 47899999999999999998875 666777766553 4558899999999999999999999999999999999998888
Q ss_pred ccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcc---hHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCC
Q 001031 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG---EHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1183)
Q Consensus 1025 ~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~---~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~ 1101 (1183)
.+..+..++.+|..+....|+||||||||.+...+.... ........+..++..+++... ..+++||+|||.++.
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vi~~tn~~~~ 157 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT--TDHVIVLASTNRADI 157 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT--TCCEEEEEEESCGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC--CCCEEEEecCCChhh
Confidence 888888999999999998999999999999976543211 012223455667777776543 367999999999999
Q ss_pred CcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChh--hHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1102 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDV--DLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1102 Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~di--dl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
|++++++ ||+..+++++|+.++|.+|++.++....+..+. .+..++..+.||++++|.++|+.|+..++++.
T Consensus 158 ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~ 233 (262)
T 2qz4_A 158 LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG 233 (262)
T ss_dssp GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC-----
T ss_pred cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999 999999999999999999999999887665443 35889999999999999999999999888653
No 24
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.93 E-value=4.1e-25 Score=239.32 Aligned_cols=227 Identities=39% Similarity=0.613 Sum_probs=189.0
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc
Q 001031 942 SDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT 1021 (1183)
Q Consensus 942 ~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~ 1021 (1183)
..+..+|++++|++.++..+++.+.. +..+..+...++ ..++|++|+||||||||+|+++|+..++.+++.+++.++.
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~-~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTC-CCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCC-CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 34578999999999999999987764 455666666554 3447899999999999999999999999999999988887
Q ss_pred cccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCc--chHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCC
Q 001031 1022 SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1183)
Q Consensus 1022 s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~--~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p 1099 (1183)
..+.+.....+..+|+.+....|+++||||||.+...+... ........++++++..+++... ...++++++||.+
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~--~~~~i~~a~t~~p 164 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRP 164 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT--TCCEEEEEEESCG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC--CCCEEEEEccCCc
Confidence 77777777889999999988889999999999987554321 1223345667788888887643 3568999999999
Q ss_pred CCCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHH
Q 001031 1100 FDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIRE 1172 (1183)
Q Consensus 1100 ~~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire 1172 (1183)
+.|+++++| ||+..+.++.|+.++|.+|++.++....+..+.++..+|..++||+++||.++|+.|+..++++
T Consensus 165 ~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 165 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 239 (254)
T ss_dssp GGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999998 8999999999999999999999988777778888999999999999999999999999988764
No 25
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.93 E-value=1.9e-25 Score=266.26 Aligned_cols=224 Identities=39% Similarity=0.616 Sum_probs=194.2
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001031 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1183)
Q Consensus 944 ~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~ 1023 (1183)
...+|+||+|+++++..+++.+.. +..+..|...+. +.++++||+||||||||+||++||.+++.+|+.+++.++...
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~-~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 103 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSC-CCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh
Confidence 468999999999999999998765 566677766654 445789999999999999999999999999999999999888
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCc--chHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCC
Q 001031 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1183)
Q Consensus 1024 ~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~--~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~ 1101 (1183)
+.+.....++.+|..++...|+||||||||.+...+... ........++++++..+++... ...+++|++||+++.
T Consensus 104 ~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~--~~~viviAatn~p~~ 181 (499)
T 2dhr_A 104 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 181 (499)
T ss_dssp CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS--SCCCEEEECCSCGGG
T ss_pred hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc--CccEEEEEecCChhh
Confidence 888888889999999988889999999999987655421 1233445677888888888753 367899999999999
Q ss_pred CcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHH
Q 001031 1102 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIR 1171 (1183)
Q Consensus 1102 Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Air 1171 (1183)
||++++| ||++.+.|++|+.++|.+|++.++....+..++++..||..+.||+|+||.++|++|+..+.+
T Consensus 182 LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~ 253 (499)
T 2dhr_A 182 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR 253 (499)
T ss_dssp SCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTT
T ss_pred cCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999998 899999999999999999999998877777888999999999999999999999999988764
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.92 E-value=6.7e-27 Score=254.62 Aligned_cols=228 Identities=38% Similarity=0.588 Sum_probs=186.2
Q ss_pred CCCCCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc
Q 001031 941 PSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1183)
Q Consensus 941 ~~e~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L 1020 (1183)
...+..+|++|+|++.+++.|.+.+.. +.+++.|...+. .+++++||+||||||||+||+++|++++.+++.+++.++
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 80 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSF 80 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSC-CCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCC-CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHH
Confidence 344567899999999999999998775 677787776553 455789999999999999999999999999999999998
Q ss_pred ccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchH---HHHHHHHHHHHHhhcCCcccCCCCEEEEEecC
Q 001031 1021 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEH---EAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1097 (1183)
Q Consensus 1021 ~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~---e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN 1097 (1183)
...+.+..+..++.+|..+....|+||||||+|.|...+...+.. .....+++.++..+++... ...+++||+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~ttn 159 (268)
T 2r62_A 81 IEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS-ENAPVIVLAATN 159 (268)
T ss_dssp TTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC-SCSCCEEEECBS
T ss_pred HHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc-CCCCEEEEEecC
Confidence 888888777778889999998899999999999997544211100 0011234556666665533 235699999999
Q ss_pred CCCCCcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHH
Q 001031 1098 RPFDLDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIR 1171 (1183)
Q Consensus 1098 ~p~~Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Air 1171 (1183)
.++.|++++++ ||+..+.++.|+.++|.++|+.++....+..+.++..|+..+.||+|+||.++|+.|+..+++
T Consensus 160 ~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~ 235 (268)
T 2r62_A 160 RPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGR 235 (268)
T ss_dssp CCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSS
T ss_pred CchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999887777778889999999999999999999999998764
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.92 E-value=1.1e-23 Score=231.63 Aligned_cols=225 Identities=40% Similarity=0.614 Sum_probs=187.2
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc
Q 001031 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK 1023 (1183)
Q Consensus 944 ~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~ 1023 (1183)
+..+|++++|.++++..+.+.+.. +..+..+...++. .+++++|+||||||||+|+++|+..++.+++.+++.++...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~-~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGAR-IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 112 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCC-CCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCC-CCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHH
Confidence 568999999999999999987764 4455666655543 44679999999999999999999999999999998887777
Q ss_pred cccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCc--chHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCC
Q 001031 1024 WFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP--GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFD 1101 (1183)
Q Consensus 1024 ~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~--~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~ 1101 (1183)
+.+.....+..+|+.+....|+++|+||||.+...+... .........++.++..+++... ...++++++||.++.
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~--~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 190 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT--TCCEEEEEEESCTTS
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC--CCCEEEEEecCCchh
Confidence 777777888999999988889999999999886544321 1122345567778888877642 356899999999999
Q ss_pred CcHHHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHH
Q 001031 1102 LDEAVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIRE 1172 (1183)
Q Consensus 1102 Ld~aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire 1172 (1183)
|++++++ ||+..+.++.|+.++|.+|++.++....+..+.++..++..++||+++||+++|+.|+..+.++
T Consensus 191 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~ 263 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 263 (278)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999998 8999999999999999999999988777778888999999999999999999999999988764
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.89 E-value=6e-23 Score=257.77 Aligned_cols=226 Identities=42% Similarity=0.688 Sum_probs=204.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccccc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKW 1024 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~ 1024 (1183)
.++|++|+|++.+++.|.+.+.+|+.++++|...++ .++.+|||+||||||||+||++||..++.+++.+++.++.+.+
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i-~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCC-CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 579999999999999999999999999999988764 4568999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcH
Q 001031 1025 FGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE 1104 (1183)
Q Consensus 1025 ~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~ 1104 (1183)
.++.+..++.+|..+....|+||||||||.+++.+... ..+...++...++..+++.... ..+++|++||+++.+++
T Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~~~~~Ll~ll~g~~~~--~~v~vI~atn~~~~ld~ 355 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSIDP 355 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC-CSHHHHHHHHHHHHHHHSSCTT--SCCEEEEECSCTTTSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc-cchHHHHHHHHHHHHhhhhccc--ccEEEecccCCchhcCH
Confidence 99999999999999999999999999999998765432 2345567788888888887543 67999999999999999
Q ss_pred HHHh--ccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHH
Q 001031 1105 AVVR--RLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREIL 1174 (1183)
Q Consensus 1105 aLlr--RFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~l 1174 (1183)
++.+ ||+..+.++.|+.++|.+|++.++.+..+..+.++..++..+.||+++++..+|..|+..++++..
T Consensus 356 al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~ 427 (806)
T 1ypw_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427 (806)
T ss_dssp TTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhc
Confidence 9998 999999999999999999999999888888888899999999999999999999999999888653
No 29
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=6.3e-23 Score=237.65 Aligned_cols=234 Identities=17% Similarity=0.179 Sum_probs=185.5
Q ss_pred ccccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001031 448 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1183)
Q Consensus 448 ~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs 527 (1183)
.-+|||++.--+ |+.|..|.++.-..|+|+++ |.+---+..+.|||.|||| ....+||||+|++++++++.++.
T Consensus 142 ~p~v~~~dIgGl--~~~k~~l~e~v~~Pl~~pe~--f~~~gi~~prGvLL~GPPG--TGKTllAkAiA~e~~~~f~~v~~ 215 (405)
T 4b4t_J 142 VPDSTYDMVGGL--TKQIKEIKEVIELPVKHPEL--FESLGIAQPKGVILYGPPG--TGKTLLARAVAHHTDCKFIRVSG 215 (405)
T ss_dssp SCSCCGGGSCSC--HHHHHHHHHHTHHHHHCHHH--HHHHTCCCCCCEEEESCSS--SSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCCHHHhCCH--HHHHHHHHHHHHHHHhCHHH--HHhCCCCCCCceEEeCCCC--CCHHHHHHHHHHhhCCCceEEEh
Confidence 357999999999 99999999999999999987 4442233458899999999 68999999999999999999886
Q ss_pred CCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCceee
Q 001031 528 LLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKF 607 (1183)
Q Consensus 528 ~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~ 607 (1183)
+.+...+-
T Consensus 216 s~l~sk~v------------------------------------------------------------------------ 223 (405)
T 4b4t_J 216 AELVQKYI------------------------------------------------------------------------ 223 (405)
T ss_dssp GGGSCSST------------------------------------------------------------------------
T ss_pred HHhhcccc------------------------------------------------------------------------
Confidence 54433221
Q ss_pred eccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhHH
Q 001031 608 VGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDK 687 (1183)
Q Consensus 608 ~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~k 687 (1183)
++..
T Consensus 224 ----------------------------------------------------------------------------Gese 227 (405)
T 4b4t_J 224 ----------------------------------------------------------------------------GEGS 227 (405)
T ss_dssp ----------------------------------------------------------------------------THHH
T ss_pred ----------------------------------------------------------------------------chHH
Confidence 1223
Q ss_pred HHHHHHHHHHhhccCCCCEEEEEcChhhhhcCC--------hh---hHHHHHHHHhcC--CCCEEEEEeccCCCcccccC
Q 001031 688 LAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------ND---AYGALKSKLENL--PSNVVVIGSHTQLDSRKEKS 754 (1183)
Q Consensus 688 ~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~~--------~~---~~~~i~~~L~~L--~g~vivIgs~~~~d~~k~k~ 754 (1183)
..+..+|+.+.. ..|.||||||+|.++.++ .+ ..+.+-..|+.+ ..+|+||||||
T Consensus 228 ~~vr~lF~~Ar~---~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATN--------- 295 (405)
T 4b4t_J 228 RMVRELFVMARE---HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATN--------- 295 (405)
T ss_dssp HHHHHHHHHHHH---TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEES---------
T ss_pred HHHHHHHHHHHH---hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccC---------
Confidence 347888888887 899999999999977521 11 233333444444 34999999999
Q ss_pred CCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhh
Q 001031 755 HPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKG 832 (1183)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~g 832 (1183)
+||.+|+ ||+| ||++++++++||..+
T Consensus 296 ---------------------rpd~LDp-------------------------------AllRpGRfD~~I~i~lPd~~~ 323 (405)
T 4b4t_J 296 ---------------------RLDILDP-------------------------------ALLRPGRIDRKIEFPPPSVAA 323 (405)
T ss_dssp ---------------------CSSSSCH-------------------------------HHHSTTSSCCEEECCCCCHHH
T ss_pred ---------------------ChhhCCH-------------------------------hHcCCCcCceEEEcCCcCHHH
Confidence 7788887 9999 999999999999999
Q ss_pred ccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhHHHHHhhh
Q 001031 833 QSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQ 911 (1183)
Q Consensus 833 R~~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~dF~~al 911 (1183)
|.+|+++|++ ..++ .+++++.||..|.||+||||+.+|++|+.+|+.+.. ..++..||+.++
T Consensus 324 R~~Il~~~~~--~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~---------------~~vt~~Df~~Al 386 (405)
T 4b4t_J 324 RAEILRIHSR--KMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERR---------------IHVTQEDFELAV 386 (405)
T ss_dssp HHHHHHHHHT--TSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC---------------SBCCHHHHHHHH
T ss_pred HHHHHHHHhc--CCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC---------------CCcCHHHHHHHH
Confidence 9999999965 3344 678999999999999999999999999999987421 134678888887
Q ss_pred hhhhh
Q 001031 912 SESKS 916 (1183)
Q Consensus 912 ~eikp 916 (1183)
.++.+
T Consensus 387 ~~v~~ 391 (405)
T 4b4t_J 387 GKVMN 391 (405)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 66543
No 30
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=5.2e-23 Score=239.31 Aligned_cols=235 Identities=18% Similarity=0.175 Sum_probs=185.7
Q ss_pred CccccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001031 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1183)
Q Consensus 447 ~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilD 526 (1183)
+..+|||++.--+ |+.|..|.++.-..|+|+++ |.+.--+..+.|||.|||| ....+||||||++++++++.++
T Consensus 175 ~~p~v~~~DIgGl--d~~k~~L~e~v~~Pl~~pe~--f~~~Gi~~prGvLLyGPPG--TGKTlLAkAiA~e~~~~fi~v~ 248 (437)
T 4b4t_I 175 KSPTESYSDIGGL--ESQIQEIKESVELPLTHPEL--YEEMGIKPPKGVILYGAPG--TGKTLLAKAVANQTSATFLRIV 248 (437)
T ss_dssp SSCCCCGGGTCSC--HHHHHHHHHHHHHHHHCCHH--HHHHTCCCCSEEEEESSTT--TTHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCcceecCcH--HHHHHHHHHHHHHHHhCHHH--HHhCCCCCCCCCceECCCC--chHHHHHHHHHHHhCCCEEEEE
Confidence 4567999999999 99999999999999999987 4443344558899999999 7899999999999999999998
Q ss_pred cCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCcee
Q 001031 527 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 606 (1183)
Q Consensus 527 s~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk 606 (1183)
.+.+...+-
T Consensus 249 ~s~l~sk~v----------------------------------------------------------------------- 257 (437)
T 4b4t_I 249 GSELIQKYL----------------------------------------------------------------------- 257 (437)
T ss_dssp SGGGCCSSS-----------------------------------------------------------------------
T ss_pred HHHhhhccC-----------------------------------------------------------------------
Confidence 655443221
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhH
Q 001031 607 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 686 (1183)
Q Consensus 607 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 686 (1183)
.+.
T Consensus 258 -----------------------------------------------------------------------------Ges 260 (437)
T 4b4t_I 258 -----------------------------------------------------------------------------GDG 260 (437)
T ss_dssp -----------------------------------------------------------------------------SHH
T ss_pred -----------------------------------------------------------------------------chH
Confidence 112
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEEcChhhhhcC--------Chhh---HHHHHHHHhcC--CCCEEEEEeccCCCccccc
Q 001031 687 KLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDA---YGALKSKLENL--PSNVVVIGSHTQLDSRKEK 753 (1183)
Q Consensus 687 k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~--------~~~~---~~~i~~~L~~L--~g~vivIgs~~~~d~~k~k 753 (1183)
...+..+|+.+.. ..|.||||+|+|.++.. +.+. ...+-..++.+ .++|+||||||
T Consensus 261 ek~ir~lF~~Ar~---~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATN-------- 329 (437)
T 4b4t_I 261 PRLCRQIFKVAGE---NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATN-------- 329 (437)
T ss_dssp HHHHHHHHHHHHH---TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEES--------
T ss_pred HHHHHHHHHHHHh---cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCC--------
Confidence 2347888888887 88999999999997762 1222 22333334444 35899999999
Q ss_pred CCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhh
Q 001031 754 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLK 831 (1183)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~ 831 (1183)
+||.+|+ ||+| ||++++++++||..
T Consensus 330 ----------------------rpd~LDp-------------------------------ALlRpGRfD~~I~v~lPd~~ 356 (437)
T 4b4t_I 330 ----------------------KIETLDP-------------------------------ALIRPGRIDRKILFENPDLS 356 (437)
T ss_dssp ----------------------CSTTCCT-------------------------------TSSCTTTEEEEECCCCCCHH
T ss_pred ----------------------ChhhcCH-------------------------------HHhcCCceeEEEEcCCcCHH
Confidence 6777887 9999 99999999999999
Q ss_pred hccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhHHHHHhh
Q 001031 832 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGI 910 (1183)
Q Consensus 832 gR~~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~dF~~a 910 (1183)
+|.+|+++|+. ..++ ++++++.||..|.||+||||+.+|++|+..|+.+... .+...||+.+
T Consensus 357 ~R~~Il~~~l~--~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~---------------~It~eDf~~A 419 (437)
T 4b4t_I 357 TKKKILGIHTS--KMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRM---------------QVTAEDFKQA 419 (437)
T ss_dssp HHHHHHHHHHT--TSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCS---------------CBCHHHHHHH
T ss_pred HHHHHHHHHhc--CCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC---------------ccCHHHHHHH
Confidence 99999999965 3344 6789999999999999999999999999999875321 2456788887
Q ss_pred hhhhhh
Q 001031 911 QSESKS 916 (1183)
Q Consensus 911 l~eikp 916 (1183)
...+.+
T Consensus 420 l~rv~~ 425 (437)
T 4b4t_I 420 KERVMK 425 (437)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 766543
No 31
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.86 E-value=1.4e-21 Score=217.77 Aligned_cols=175 Identities=20% Similarity=0.292 Sum_probs=131.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHH----hccCCeEEEEeCCcccc
Q 001031 981 TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA----SKIAPSVVFVDEVDSML 1056 (1183)
Q Consensus 981 ~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A----~k~~PsILfIDEID~Ll 1056 (1183)
.+++.++|||||||||||+||++||++++.+|+.++++++.+.+.|..+..++.+|..| ++..|+||||||||.+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 45668999999999999999999999999999999999999999999999999999998 57789999999999997
Q ss_pred cCCCCcch-HHHHHHHHHHHHHhhcCCc---------ccCCCCEEEEEecCCCCCCcHHHHh--ccCcEEEecCCCHHHH
Q 001031 1057 GRRENPGE-HEAMRKMKNEFMVNWDGLR---------TKDKERVLVLAATNRPFDLDEAVVR--RLPRRLMVNLPDAPNR 1124 (1183)
Q Consensus 1057 ~~r~~~~~-~e~l~~il~~LL~~Ldgl~---------~k~~~~VlVIaTTN~p~~Ld~aLlr--RFd~vI~I~lPd~eeR 1124 (1183)
+.+..... ......+.+.|+..+++.. .....+++||+|||.++.|+++++| ||+..+. +|+.++|
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r 190 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 190 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHH
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHH
Confidence 64432111 1122345567777776432 1134679999999999999999997 8876665 6899999
Q ss_pred HHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHH
Q 001031 1125 EKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNL 1161 (1183)
Q Consensus 1125 ~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L 1161 (1183)
.+|++.++... ++++..++..++||++++|..+
T Consensus 191 ~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~~ 223 (293)
T 3t15_A 191 IGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDFF 223 (293)
T ss_dssp HHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHHH
T ss_pred HHHHHHhccCC----CCCHHHHHHHhCCCCcccHHHH
Confidence 99999888654 4567889999999999888653
No 32
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.86 E-value=5.4e-21 Score=238.53 Aligned_cols=207 Identities=17% Similarity=0.230 Sum_probs=144.8
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccc
Q 001031 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWF 1025 (1183)
Q Consensus 949 dDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~~ 1025 (1183)
.+++|++.+++.+.+.+...... ...-.+|..++||+||||||||++|+++|+.+ +.+|+.++|+++...+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~-----~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAG-----LKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTT-----CSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcc-----cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence 46899999999998887642210 00112344479999999999999999999998 78999999999887665
Q ss_pred cchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCc-------ccCCCCEEEEEecCC
Q 001031 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR-------TKDKERVLVLAATNR 1098 (1183)
Q Consensus 1026 GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~-------~k~~~~VlVIaTTN~ 1098 (1183)
.. ...++...++.+++||||||||.+ .+ .+.+.|+..++... .....+++||+|||.
T Consensus 566 ~~----~~~l~~~~~~~~~~vl~lDEi~~~-----~~-------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 566 TS----GGQLTEKVRRKPYSVVLLDAIEKA-----HP-------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp CC-------CHHHHHHCSSSEEEEECGGGS-----CH-------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred cc----cchhhHHHHhCCCeEEEEeCcccc-----CH-------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 44 122333445556789999999987 22 23333333333211 112357899999996
Q ss_pred CCC------------CcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhc---------cC-CChhhHHHHHHH--cCCCc
Q 001031 1099 PFD------------LDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE---------EL-ASDVDLEGIANM--ADGYS 1154 (1183)
Q Consensus 1099 p~~------------Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~---------~l-~~didl~~LA~~--TeGyS 1154 (1183)
+.. +.++|++||+.++.++.|+.+++.+|++.++... .+ .++..++.|+.. ...+.
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 709 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYG 709 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTT
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCC
Confidence 544 7899999999999999999999999999988652 11 244456777654 23566
Q ss_pred HHHHHHHHHHHHHHhHHHHHhh
Q 001031 1155 GSDLKNLCVTAAHCPIREILEK 1176 (1183)
Q Consensus 1155 g~DL~~L~~~Aa~~Aire~le~ 1176 (1183)
.++|+++++.+...++.+.+-.
T Consensus 710 ~R~L~~~i~~~v~~~l~~~~l~ 731 (758)
T 3pxi_A 710 ARPLRRAIQKHVEDRLSEELLR 731 (758)
T ss_dssp TTTHHHHHHHHTHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHHHHc
Confidence 7899999999998888776543
No 33
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.1e-22 Score=235.90 Aligned_cols=236 Identities=16% Similarity=0.164 Sum_probs=186.5
Q ss_pred CCccccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEE
Q 001031 446 PENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIV 525 (1183)
Q Consensus 446 ~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLil 525 (1183)
-+.-+|||+..--+ ++.|..|.++....|+|+++ |.+.--+..+.|||.|||| ....+||||+|++++++++.+
T Consensus 173 ~~~p~~t~~digGl--~~~k~~l~e~v~~pl~~pe~--f~~~g~~~prGvLLyGPPG--TGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 173 DEKPTETYSDVGGL--DKQIEELVEAIVLPMKRADK--FKDMGIRAPKGALMYGPPG--TGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp ESSCSCCGGGSCSC--HHHHHHHHHHTHHHHHCSHH--HHHHCCCCCCEEEEESCTT--SSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCCChHhcCcH--HHHHHHHHHHHHHHHhCHHH--HHhCCCCCCCeeEEECcCC--CCHHHHHHHHHHHhCCCEEEE
Confidence 35678999999998 99999999999999999886 5443344568999999999 689999999999999999999
Q ss_pred ecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCce
Q 001031 526 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 605 (1183)
Q Consensus 526 Ds~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 605 (1183)
+.+.+.+.+-
T Consensus 247 ~~s~l~~~~v---------------------------------------------------------------------- 256 (434)
T 4b4t_M 247 AAPQLVQMYI---------------------------------------------------------------------- 256 (434)
T ss_dssp EGGGGCSSCS----------------------------------------------------------------------
T ss_pred ehhhhhhccc----------------------------------------------------------------------
Confidence 8655443221
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchh
Q 001031 606 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 685 (1183)
Q Consensus 606 k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~ 685 (1183)
++
T Consensus 257 ------------------------------------------------------------------------------Ge 258 (434)
T 4b4t_M 257 ------------------------------------------------------------------------------GE 258 (434)
T ss_dssp ------------------------------------------------------------------------------SH
T ss_pred ------------------------------------------------------------------------------ch
Confidence 11
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEEcChhhhhcCC--------hhh---HHHHHHHHhcCC--CCEEEEEeccCCCcccc
Q 001031 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDA---YGALKSKLENLP--SNVVVIGSHTQLDSRKE 752 (1183)
Q Consensus 686 ~k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~~--------~~~---~~~i~~~L~~L~--g~vivIgs~~~~d~~k~ 752 (1183)
....+..+|+.+.. .+|.||||+|+|.++..+ .+. ...+-..|+.+. ++|+||||||
T Consensus 259 se~~ir~lF~~A~~---~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTN------- 328 (434)
T 4b4t_M 259 GAKLVRDAFALAKE---KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATN------- 328 (434)
T ss_dssp HHHHHHHHHHHHHH---HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECS-------
T ss_pred HHHHHHHHHHHHHh---cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCC-------
Confidence 22347888888877 889999999999987632 122 223333444443 4899999999
Q ss_pred cCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhh
Q 001031 753 KSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETL 830 (1183)
Q Consensus 753 k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~ 830 (1183)
+||.+|+ ||+| ||++++++++||.
T Consensus 329 -----------------------rp~~LD~-------------------------------AllRpGRfD~~I~i~lPd~ 354 (434)
T 4b4t_M 329 -----------------------RVDVLDP-------------------------------ALLRSGRLDRKIEFPLPSE 354 (434)
T ss_dssp -----------------------SCCCCCT-------------------------------TTCSTTSEEEEEECCCCCH
T ss_pred -----------------------CchhcCH-------------------------------hHhcCCceeEEEEeCCcCH
Confidence 7788887 9988 9999999999999
Q ss_pred hhccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhHHHHHh
Q 001031 831 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 909 (1183)
Q Consensus 831 ~gR~~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~dF~~ 909 (1183)
.+|.+|+++|++ .-.+ .+++++.||..|.||+||||+.+|++|+..|+.+... .+...||..
T Consensus 355 ~~R~~Il~~~~~--~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~---------------~i~~~Df~~ 417 (434)
T 4b4t_M 355 DSRAQILQIHSR--KMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQS---------------SVKHEDFVE 417 (434)
T ss_dssp HHHHHHHHHHHH--HSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCS---------------SBCHHHHHH
T ss_pred HHHHHHHHHHhc--CCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC---------------CcCHHHHHH
Confidence 999999999975 2233 6789999999999999999999999999999875321 245678888
Q ss_pred hhhhhhh
Q 001031 910 IQSESKS 916 (1183)
Q Consensus 910 al~eikp 916 (1183)
++.++++
T Consensus 418 Al~~v~~ 424 (434)
T 4b4t_M 418 GISEVQA 424 (434)
T ss_dssp HHHSCSS
T ss_pred HHHHHhC
Confidence 8776654
No 34
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.86 E-value=2.4e-21 Score=241.38 Aligned_cols=206 Identities=17% Similarity=0.236 Sum_probs=145.9
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCC---CCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc---
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQL---TKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK--- 1023 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l---~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~--- 1023 (1183)
+++|++.+++.+...+... ..++ .+|..++||+||||||||++|+++|+.++.+|+.++|+++...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 5789999999888877531 1111 2455579999999999999999999999999999999886542
Q ss_pred --cccchHHH-----HHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCccc-------CCCC
Q 001031 1024 --WFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKER 1089 (1183)
Q Consensus 1024 --~~GesE~~-----Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k-------~~~~ 1089 (1183)
.+|....+ ...+....++.+++||||||||.+ . ..+++.|+..++..... .-.+
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~-----~-------~~~~~~Ll~~le~~~~~~~~g~~~~~~~ 598 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----H-------PDVFNILLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS-----C-------HHHHHHHHHHHHHSEEEETTTEEEECTT
T ss_pred hhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCcccc-----C-------HHHHHHHHHHhcCcEEEcCCCCEEecCC
Confidence 22221111 122344445566799999999987 2 22344444444421110 1256
Q ss_pred EEEEEecCCCC-------------------------CCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhc---------
Q 001031 1090 VLVLAATNRPF-------------------------DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE--------- 1135 (1183)
Q Consensus 1090 VlVIaTTN~p~-------------------------~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~--------- 1135 (1183)
++||+|||... .+.++|++||+.++.|+.|+.+++..|++.++.+.
T Consensus 599 ~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~ 678 (758)
T 1r6b_X 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGV 678 (758)
T ss_dssp EEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred eEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 88999999743 57889999999999999999999999999988632
Q ss_pred cC-CChhhHHHHHHHc--CCCcHHHHHHHHHHHHHHhHHHHHh
Q 001031 1136 EL-ASDVDLEGIANMA--DGYSGSDLKNLCVTAAHCPIREILE 1175 (1183)
Q Consensus 1136 ~l-~~didl~~LA~~T--eGySg~DL~~L~~~Aa~~Aire~le 1175 (1183)
.+ .++..++.|+... ..+..++|.++++.+...++.+.+-
T Consensus 679 ~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~l 721 (758)
T 1r6b_X 679 SLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELL 721 (758)
T ss_dssp EEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHHH
T ss_pred EEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 11 2455577777654 3567899999999999887766543
No 35
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.7e-22 Score=232.44 Aligned_cols=235 Identities=17% Similarity=0.173 Sum_probs=184.4
Q ss_pred CccccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001031 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1183)
Q Consensus 447 ~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilD 526 (1183)
+.-+|||++.--+ ++.|..|.++.-..|+|+++ |.+-=-+..+.|||.|||| ....+||||||++++++++.++
T Consensus 174 ~~p~v~~~digGl--~~~k~~l~e~v~~pl~~p~~--f~~~g~~~prGvLL~GPPG--tGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 174 EQGEITFDGIGGL--TEQIRELREVIELPLKNPEI--FQRVGIKPPKGVLLYGPPG--TGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp ESCSSCSGGGCSC--HHHHHHHHHHHHHHHHCHHH--HHHHCCCCCCEEEEESCTT--SSHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCChhHhCCh--HHHHHHHHHHHHHHHhCHHH--HHhCCCCCCCeEEEECCCC--CcHHHHHHHHHHHhCCCEEEEe
Confidence 3568999999988 99999999999999999886 4332234568999999999 7999999999999999999988
Q ss_pred cCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCcee
Q 001031 527 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 606 (1183)
Q Consensus 527 s~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk 606 (1183)
.+.+.+.+..
T Consensus 248 ~s~l~sk~~G---------------------------------------------------------------------- 257 (437)
T 4b4t_L 248 ASGIVDKYIG---------------------------------------------------------------------- 257 (437)
T ss_dssp GGGTCCSSSS----------------------------------------------------------------------
T ss_pred hhhhccccch----------------------------------------------------------------------
Confidence 6555442221
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhH
Q 001031 607 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 686 (1183)
Q Consensus 607 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 686 (1183)
..
T Consensus 258 ------------------------------------------------------------------------------es 259 (437)
T 4b4t_L 258 ------------------------------------------------------------------------------ES 259 (437)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred ------------------------------------------------------------------------------HH
Confidence 12
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEEcChhhhhcC--------Chhh---HHHHHHHHhcC--CCCEEEEEeccCCCccccc
Q 001031 687 KLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDA---YGALKSKLENL--PSNVVVIGSHTQLDSRKEK 753 (1183)
Q Consensus 687 k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~--------~~~~---~~~i~~~L~~L--~g~vivIgs~~~~d~~k~k 753 (1183)
...+..+|+.+.. .+|.||||+|+|.++.. ..+. .+.|-..|+.+ .++|+||||||
T Consensus 260 e~~ir~~F~~A~~---~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATN-------- 328 (437)
T 4b4t_L 260 ARIIREMFAYAKE---HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATN-------- 328 (437)
T ss_dssp HHHHHHHHHHHHH---SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEES--------
T ss_pred HHHHHHHHHHHHh---cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecC--------
Confidence 2347778888877 89999999999997752 1122 23333444444 34899999999
Q ss_pred CCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhh
Q 001031 754 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLK 831 (1183)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~ 831 (1183)
+||.+|+ ||+| ||++++++++||..
T Consensus 329 ----------------------rp~~LDp-------------------------------AllRpGRfD~~I~i~lPd~~ 355 (437)
T 4b4t_L 329 ----------------------RPDTLDP-------------------------------ALLRPGRLDRKVEIPLPNEA 355 (437)
T ss_dssp ----------------------STTSSCT-------------------------------TTTSTTSEEEEECCCCCCHH
T ss_pred ----------------------CchhhCH-------------------------------HHhCCCccceeeecCCcCHH
Confidence 6778887 9988 79999999999999
Q ss_pred hccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhHHHHHhh
Q 001031 832 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGI 910 (1183)
Q Consensus 832 gR~~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~dF~~a 910 (1183)
+|.+|+++|+. ...+ .+++++.||..|.||+||||+.+|++|+.+|+.+... .+...||..+
T Consensus 356 ~R~~Il~~~~~--~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~---------------~i~~~d~~~A 418 (437)
T 4b4t_L 356 GRLEIFKIHTA--KVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRD---------------HINPDDLMKA 418 (437)
T ss_dssp HHHHHHHHHHH--TSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCS---------------SBCHHHHHHH
T ss_pred HHHHHHHHHhc--CCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC---------------CCCHHHHHHH
Confidence 99999999975 2233 6789999999999999999999999999999874321 2456788888
Q ss_pred hhhhhh
Q 001031 911 QSESKS 916 (1183)
Q Consensus 911 l~eikp 916 (1183)
+..+.+
T Consensus 419 l~~v~~ 424 (437)
T 4b4t_L 419 VRKVAE 424 (437)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776655
No 36
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.5e-21 Score=228.95 Aligned_cols=235 Identities=19% Similarity=0.163 Sum_probs=183.7
Q ss_pred CccccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001031 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1183)
Q Consensus 447 ~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilD 526 (1183)
+.-+|||+..--+ ++.|..|.++....|++++. |.+-=-...+.|||.|||| ....+||||||++++++++.++
T Consensus 202 e~P~vt~~DIgGl--~~~k~~L~e~V~~pl~~pe~--f~~~Gi~pprGILLyGPPG--TGKTlLAkAiA~e~~~~fi~vs 275 (467)
T 4b4t_H 202 EKPDVTYSDVGGC--KDQIEKLREVVELPLLSPER--FATLGIDPPKGILLYGPPG--TGKTLCARAVANRTDATFIRVI 275 (467)
T ss_dssp SSCSCCCSSCTTC--HHHHHHHHHHTHHHHHCHHH--HHHHTCCCCSEEEECSCTT--SSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCCHHHhccH--HHHHHHHHHHHHHHhcCHHH--HHHCCCCCCCceEeeCCCC--CcHHHHHHHHHhccCCCeEEEE
Confidence 3457999999988 99999999999999999886 3331134568999999999 6899999999999999999988
Q ss_pred cCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCcee
Q 001031 527 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 606 (1183)
Q Consensus 527 s~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk 606 (1183)
.+.|.+.+-.
T Consensus 276 ~s~L~sk~vG---------------------------------------------------------------------- 285 (467)
T 4b4t_H 276 GSELVQKYVG---------------------------------------------------------------------- 285 (467)
T ss_dssp GGGGCCCSSS----------------------------------------------------------------------
T ss_pred hHHhhcccCC----------------------------------------------------------------------
Confidence 6554432211
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhH
Q 001031 607 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 686 (1183)
Q Consensus 607 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 686 (1183)
..
T Consensus 286 ------------------------------------------------------------------------------es 287 (467)
T 4b4t_H 286 ------------------------------------------------------------------------------EG 287 (467)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred ------------------------------------------------------------------------------HH
Confidence 12
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEEcChhhhhcCC--------hh---hHHHHHHHHhcC--CCCEEEEEeccCCCccccc
Q 001031 687 KLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------ND---AYGALKSKLENL--PSNVVVIGSHTQLDSRKEK 753 (1183)
Q Consensus 687 k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~~--------~~---~~~~i~~~L~~L--~g~vivIgs~~~~d~~k~k 753 (1183)
...+..+|+.+.. .+|.||||+|+|.++..+ .+ ....+-..|+.+ .++|+||||||
T Consensus 288 ek~ir~lF~~Ar~---~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATN-------- 356 (467)
T 4b4t_H 288 ARMVRELFEMART---KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATN-------- 356 (467)
T ss_dssp HHHHHHHHHHHHH---TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECS--------
T ss_pred HHHHHHHHHHHHh---cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCC--------
Confidence 2337788888887 899999999999977521 11 222233334444 35899999999
Q ss_pred CCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhh
Q 001031 754 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLK 831 (1183)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~ 831 (1183)
+||.+|+ ||+| ||++++++++||..
T Consensus 357 ----------------------rpd~LDp-------------------------------ALlRpGRFD~~I~i~lPd~~ 383 (467)
T 4b4t_H 357 ----------------------RPNTLDP-------------------------------ALLRPGRIDRKVEFSLPDLE 383 (467)
T ss_dssp ----------------------CTTSBCH-------------------------------HHHSTTTCCEEECCCCCCHH
T ss_pred ----------------------CcccCCh-------------------------------hhhccccccEEEEeCCcCHH
Confidence 6778887 9999 99999999999999
Q ss_pred hccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhHHHHHhh
Q 001031 832 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGI 910 (1183)
Q Consensus 832 gR~~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~dF~~a 910 (1183)
+|.+|+++|++ .-++ .+++++.||..|.||+||||+.||++|+.+|+.+... .+...||+.+
T Consensus 384 ~R~~Ilk~~l~--~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~---------------~it~~Df~~A 446 (467)
T 4b4t_H 384 GRANIFRIHSK--SMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK---------------VATEKDFLKA 446 (467)
T ss_dssp HHHHHHHHHHT--TSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCS---------------SBCHHHHHHH
T ss_pred HHHHHHHHHhc--CCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCC---------------ccCHHHHHHH
Confidence 99999999965 3334 6789999999999999999999999999999875321 2456788887
Q ss_pred hhhhhh
Q 001031 911 QSESKS 916 (1183)
Q Consensus 911 l~eikp 916 (1183)
+.++..
T Consensus 447 l~kV~~ 452 (467)
T 4b4t_H 447 VDKVIS 452 (467)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 766543
No 37
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=3.9e-21 Score=224.94 Aligned_cols=232 Identities=19% Similarity=0.225 Sum_probs=182.6
Q ss_pred CccccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001031 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1183)
Q Consensus 447 ~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilD 526 (1183)
+..+|||++.--+ +..|.-|.++....|+|+++ |.+-=-+..+.|||.|||| ....+||||+|++++++++.++
T Consensus 165 ~~p~v~~~digGl--~~~k~~l~e~v~~pl~~p~~--~~~~g~~~prGiLL~GPPG--tGKT~lakAiA~~~~~~~~~v~ 238 (428)
T 4b4t_K 165 EKPDVTYADVGGL--DMQKQEIREAVELPLVQADL--YEQIGIDPPRGVLLYGPPG--TGKTMLVKAVANSTKAAFIRVN 238 (428)
T ss_dssp SSCSCCGGGSCSC--HHHHHHHHHHHHHHHHCHHH--HHHHCCCCCCEEEEESCTT--TTHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCCHHHhccH--HHHHHHHHHHHHHHHhCHHH--HHhCCCCCCceEEEECCCC--CCHHHHHHHHHHHhCCCeEEEe
Confidence 4567999999998 99999999999999999886 4331124457899999999 6999999999999999999998
Q ss_pred cCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCcee
Q 001031 527 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 606 (1183)
Q Consensus 527 s~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk 606 (1183)
.+.+.+.+-
T Consensus 239 ~~~l~~~~~----------------------------------------------------------------------- 247 (428)
T 4b4t_K 239 GSEFVHKYL----------------------------------------------------------------------- 247 (428)
T ss_dssp GGGTCCSSC-----------------------------------------------------------------------
T ss_pred cchhhcccc-----------------------------------------------------------------------
Confidence 655443211
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhH
Q 001031 607 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 686 (1183)
Q Consensus 607 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 686 (1183)
+..
T Consensus 248 -----------------------------------------------------------------------------Ge~ 250 (428)
T 4b4t_K 248 -----------------------------------------------------------------------------GEG 250 (428)
T ss_dssp -----------------------------------------------------------------------------SHH
T ss_pred -----------------------------------------------------------------------------chh
Confidence 111
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEEcChhhhhcCC-----------hhhHHHHHHHHhcC--CCCEEEEEeccCCCccccc
Q 001031 687 KLAINELFEVALNESKSSPLIVFVKDIEKSLTGN-----------NDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEK 753 (1183)
Q Consensus 687 k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~~-----------~~~~~~i~~~L~~L--~g~vivIgs~~~~d~~k~k 753 (1183)
...+..+|+.+.. ..|.||||+|+|.++... .+..+.+-..|+.+ ..+|+||||||
T Consensus 251 e~~ir~lF~~A~~---~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN-------- 319 (428)
T 4b4t_K 251 PRMVRDVFRLARE---NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATN-------- 319 (428)
T ss_dssp HHHHHHHHHHHHH---TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEES--------
T ss_pred HHHHHHHHHHHHH---cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecC--------
Confidence 2237788888877 889999999999987621 23344455555555 34899999999
Q ss_pred CCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhh-hhhh
Q 001031 754 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERD-VETL 830 (1183)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~-Lpd~ 830 (1183)
.||.+|+ ||+| ||+++++++ +||.
T Consensus 320 ----------------------~~~~LD~-------------------------------AllRpGRfd~~I~~p~lPd~ 346 (428)
T 4b4t_K 320 ----------------------RADTLDP-------------------------------ALLRPGRLDRKIEFPSLRDR 346 (428)
T ss_dssp ----------------------CSSSCCH-------------------------------HHHSSSSEEEEEECCSSCCH
T ss_pred ----------------------ChhhcCh-------------------------------hhhcCCcceEEEEcCCCCCH
Confidence 6777887 9999 999999995 9999
Q ss_pred hhccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhHHHHHh
Q 001031 831 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 909 (1183)
Q Consensus 831 ~gR~~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~dF~~ 909 (1183)
.+|..|+++|+. ..++ .+++++.||..|.||+||||+.+|++|+..|+.+... .+...||+.
T Consensus 347 ~~R~~Il~~~~~--~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~---------------~i~~~d~~~ 409 (428)
T 4b4t_K 347 RERRLIFGTIAS--KMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRY---------------VILQSDLEE 409 (428)
T ss_dssp HHHHHHHHHHHH--SSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCS---------------SBCHHHHHH
T ss_pred HHHHHHHHHHhc--CCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC---------------CCCHHHHHH
Confidence 999999999965 3334 6789999999999999999999999999999875321 245678877
Q ss_pred hhhh
Q 001031 910 IQSE 913 (1183)
Q Consensus 910 al~e 913 (1183)
+...
T Consensus 410 A~~~ 413 (428)
T 4b4t_K 410 AYAT 413 (428)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 38
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.81 E-value=5.3e-19 Score=223.48 Aligned_cols=212 Identities=17% Similarity=0.235 Sum_probs=147.4
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc--
Q 001031 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-- 1023 (1183)
Q Consensus 949 dDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~-- 1023 (1183)
.+++|++.+++.+...+..... .-..-.+|..++||+||||||||++|++|++.+ +.+|+.++|+.+...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~-----g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~ 632 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARA-----GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 632 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGG-----GCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGG
T ss_pred cccCCcHHHHHHHHHHHHHHhc-----ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhH
Confidence 5689999999998887763210 000112344689999999999999999999998 789999999876543
Q ss_pred ---cccchHHH-----HHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCccc-------CCC
Q 001031 1024 ---WFGEGEKY-----VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-------DKE 1088 (1183)
Q Consensus 1024 ---~~GesE~~-----Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k-------~~~ 1088 (1183)
.+|....+ ...+....+...++||||||||.+- ..+.+.|+..++..... +-.
T Consensus 633 ~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~------------~~~~~~Ll~~l~~~~~~~~~g~~vd~~ 700 (854)
T 1qvr_A 633 VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAH------------PDVFNILLQILDDGRLTDSHGRTVDFR 700 (854)
T ss_dssp GGGC--------------CHHHHHHHCSSEEEEESSGGGSC------------HHHHHHHHHHHTTTEECCSSSCCEECT
T ss_pred HHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccC------------HHHHHHHHHHhccCceECCCCCEeccC
Confidence 22211111 1223333445566999999999871 23455566666532211 124
Q ss_pred CEEEEEecCC--------------------------CCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhc-------
Q 001031 1089 RVLVLAATNR--------------------------PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE------- 1135 (1183)
Q Consensus 1089 ~VlVIaTTN~--------------------------p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~------- 1135 (1183)
+++||+|||. ...+.++|+.||+.++.+.+|+.++...|++.++.+.
T Consensus 701 ~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~ 780 (854)
T 1qvr_A 701 NTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEK 780 (854)
T ss_dssp TEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 6889999997 2357788999999899999999999999999988631
Q ss_pred --cC-CChhhHHHHHHHcC--CCcHHHHHHHHHHHHHHhHHHHHhhh
Q 001031 1136 --EL-ASDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIREILEKE 1177 (1183)
Q Consensus 1136 --~l-~~didl~~LA~~Te--GySg~DL~~L~~~Aa~~Aire~le~e 1177 (1183)
.+ .++..++.|+...- .+..++|+++++.+...++.+.+...
T Consensus 781 ~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~ 827 (854)
T 1qvr_A 781 RISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAG 827 (854)
T ss_dssp TCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHHHT
T ss_pred CceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHhC
Confidence 11 24556777887765 67889999999999999887775543
No 39
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.79 E-value=1.8e-18 Score=191.56 Aligned_cols=216 Identities=16% Similarity=0.183 Sum_probs=163.5
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCC--CCCCceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEecCcc
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQL--TKPCKGILLFGPPGTGKTMLAKAVATEA-------GANFINISMSSI 1020 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l--~kP~~gVLL~GPPGTGKT~LAkAIA~eL-------g~pfi~I~~s~L 1020 (1183)
+|+|++.+++.|.+.+..+.. +..+.+.++ ..+..++||+||||||||++|+++|+.+ ..+++.+++.++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 689999999999998876442 333332222 2345679999999999999999999988 348999999999
Q ss_pred ccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC
Q 001031 1021 TSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1183)
Q Consensus 1021 ~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1183)
.+.++|.....+..+|..+ .++||||||+|.|+..+.... ....+++.|+..++.. ..+++||+++|...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~---~~~~~~~~Ll~~l~~~----~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERD---YGQEAIEILLQVMENN----RDDLVVILAGYADR 180 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---C---CTHHHHHHHHHHHHHC----TTTCEEEEEECHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCccc---ccHHHHHHHHHHHhcC----CCCEEEEEeCChHH
Confidence 9999999888888888877 468999999999975443211 1123444555555432 35688889887643
Q ss_pred -----CCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHc-------CCCcHHHHHHHHHHHHH
Q 001031 1101 -----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA-------DGYSGSDLKNLCVTAAH 1167 (1183)
Q Consensus 1101 -----~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~T-------eGySg~DL~~L~~~Aa~ 1167 (1183)
.+++++++||+.++.|+.|+.+++.+|++.++.+..+. ++..+..++... ....++++.++++.|+.
T Consensus 181 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 181 MENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999876543 445566676652 23458999999999999
Q ss_pred HhHHHHHhh
Q 001031 1168 CPIREILEK 1176 (1183)
Q Consensus 1168 ~Aire~le~ 1176 (1183)
.+..+++..
T Consensus 261 ~~~~r~~~~ 269 (309)
T 3syl_A 261 RQANRLFTA 269 (309)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 988888763
No 40
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.77 E-value=1.4e-20 Score=222.05 Aligned_cols=202 Identities=21% Similarity=0.236 Sum_probs=137.6
Q ss_pred CCCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCccc
Q 001031 944 IGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSSIT 1021 (1183)
Q Consensus 944 ~~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg--~pfi~I~~s~L~ 1021 (1183)
+...|++++|++++++.+.+++... .. + ..+++++||+||||||||++|+++|++++ .+|+.++++++.
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~-------~~-~-~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELI-------KS-K-KMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH-------HT-T-CCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred hhhchhhccCHHHHHHHHHHHHHHH-------Hh-C-CCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 3557899999999999988877531 11 2 23568999999999999999999999998 999999999999
Q ss_pred cccccchHHHHHHHHHHH---hccCCeEEEEeCCcccccCCCCcchHH---HHH---------------HHHHHHHHhhc
Q 001031 1022 SKWFGEGEKYVKAVFSLA---SKIAPSVVFVDEVDSMLGRRENPGEHE---AMR---------------KMKNEFMVNWD 1080 (1183)
Q Consensus 1022 s~~~GesE~~Ir~lF~~A---~k~~PsILfIDEID~Ll~~r~~~~~~e---~l~---------------~il~~LL~~Ld 1080 (1183)
+.+.|+.+. ++.+|..| +...|+||||||||.+++.+....... ... ++..+++..++
T Consensus 103 ~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~ 181 (456)
T 2c9o_A 103 STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181 (456)
T ss_dssp CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHH
T ss_pred HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHh
Confidence 999999987 99999999 788899999999999998775431111 101 11122444443
Q ss_pred CCcccCCCCEEEEEecCCCCCCcHHHHh--ccCc--EEEecCCC--HHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCc
Q 001031 1081 GLRTKDKERVLVLAATNRPFDLDEAVVR--RLPR--RLMVNLPD--APNREKIIRVILAKEELASDVDLEGIANMADGYS 1154 (1183)
Q Consensus 1081 gl~~k~~~~VlVIaTTN~p~~Ld~aLlr--RFd~--vI~I~lPd--~eeR~eILk~iL~k~~l~~didl~~LA~~TeGyS 1154 (1183)
......+..++|++|||.++.++++++| ||++ .+.++.|+ .++|.+|++.+. ..+++.++..++|
T Consensus 182 ~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~-------~~dl~~~a~~t~g-- 252 (456)
T 2c9o_A 182 KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT-------LHDLDVANARPQG-- 252 (456)
T ss_dssp HTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEE-------HHHHHHTC-------
T ss_pred hccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHH-------HHHHHHHHHhCCC--
Confidence 2222233456667999999999999876 8987 56777774 477888776543 2378999999999
Q ss_pred HHHHHHHHHH
Q 001031 1155 GSDLKNLCVT 1164 (1183)
Q Consensus 1155 g~DL~~L~~~ 1164 (1183)
|+||.+||..
T Consensus 253 gadl~~l~~~ 262 (456)
T 2c9o_A 253 GQDILSMMGQ 262 (456)
T ss_dssp ----------
T ss_pred hhHHHHHHhh
Confidence 9999999954
No 41
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.73 E-value=4.1e-17 Score=179.58 Aligned_cols=224 Identities=22% Similarity=0.296 Sum_probs=153.7
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-ccccch
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGEG 1028 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s-~~~Ges 1028 (1183)
+++|++.+++.+...+..++.+..+........++.++||+||||||||++|+++|+.++.+++.+++..+.. .++|..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 5889999999998887654332221111001124578999999999999999999999999999999988765 455432
Q ss_pred -HHHHHHHHHHH-----hccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcc------cCCCCEEEEEe-
Q 001031 1029 -EKYVKAVFSLA-----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDKERVLVLAA- 1095 (1183)
Q Consensus 1029 -E~~Ir~lF~~A-----~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~------k~~~~VlVIaT- 1095 (1183)
...++.+|..+ ....++||||||||.+...............+.+.|+..+++... ....++++|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~ 175 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG 175 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcC
Confidence 34566666533 112368999999999975543322222223345566666654311 12246788888
Q ss_pred ---cCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHH----HH-------hhccC---CChhhHHHHHHHcC-------
Q 001031 1096 ---TNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV----IL-------AKEEL---ASDVDLEGIANMAD------- 1151 (1183)
Q Consensus 1096 ---TN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~----iL-------~k~~l---~~didl~~LA~~Te------- 1151 (1183)
++.+..+++++++||+.++.++.|+.+++.+|++. ++ ..... .++..++.|+..+.
T Consensus 176 ~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~ 255 (310)
T 1ofh_A 176 AFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTE 255 (310)
T ss_dssp CCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSC
T ss_pred CcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccccc
Confidence 45778899999999998899999999999999983 22 12221 25556777887762
Q ss_pred CCcHHHHHHHHHHHHHHhHHHH
Q 001031 1152 GYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1152 GySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
+...+.+.++++.+...+..+.
T Consensus 256 ~g~~R~l~~~l~~~~~~~~~~~ 277 (310)
T 1ofh_A 256 NIGARRLHTVMERLMDKISFSA 277 (310)
T ss_dssp CCTTHHHHHHHHHHSHHHHHHG
T ss_pred ccCcHHHHHHHHHHHHhhhcCC
Confidence 4678899999998876654433
No 42
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.70 E-value=6.1e-17 Score=164.32 Aligned_cols=108 Identities=25% Similarity=0.384 Sum_probs=97.6
Q ss_pred CccceeccccCCCCceeeecceeEEccCCccceeecCCC---------CCccceEEEEeecC-CcceEEEEEecCCceEE
Q 001031 132 IPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPS---------ISKNLCRLRRIENG-GPSGALLEITGGKGEVE 201 (1183)
Q Consensus 132 ~pW~rL~s~~~~~p~~~i~~~~~t~G~~~~cd~~l~d~~---------~s~~~c~l~~~~~~-g~~~a~le~~~~~G~v~ 201 (1183)
.+||+|+++...++++.+....|+|||+..||+.|+|+. +|..||+|.....+ +...++|+|.|+||| |
T Consensus 28 ~~w~~L~~~~~~~~~i~L~~~~~~IGR~~~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~D~StNGT-~ 106 (149)
T 1gxc_A 28 APWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGT-F 106 (149)
T ss_dssp -CCEEEEECSTTCCCEEECSSEEEEESSTTCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEECCSSCE-E
T ss_pred CeeEEEEEcCCCCceEEECCCCEEecCCCCCCEEECCccccccccCCcCchhheEEEEECCCCceeEEEEEECCCCCe-E
Confidence 499999999999999999999999999999999999995 99999999987542 234689999999999 7
Q ss_pred EcCeecCCCceEEeeCCCEEEEccCCCeeEEeeecCccc
Q 001031 202 VNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDT 240 (1183)
Q Consensus 202 vNg~~~~k~~~~~L~~gDev~f~~~~~~ayifq~l~~~~ 240 (1183)
|||+++.++..+.|++||+|.|+.....+|+|+++..++
T Consensus 107 VNg~~i~~~~~~~L~~GD~I~lG~~~~~~f~f~d~~~~~ 145 (149)
T 1gxc_A 107 VNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVDD 145 (149)
T ss_dssp ETTEECCTTCEEECCTTEEEEESSTTCEEEEEEETTCC-
T ss_pred ECCEECCCCCeEECCCCCEEEECCCCCeEEEEEECCccc
Confidence 999999999999999999999999988999999987654
No 43
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.70 E-value=3.2e-16 Score=177.56 Aligned_cols=202 Identities=19% Similarity=0.220 Sum_probs=143.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecCcccc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSITS 1022 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~--pfi~I~~s~L~s 1022 (1183)
..+|++++|.+..++.+..++.. +..+ ..+++++||+||||||||++|+++|+.++. +|+.+++..+..
T Consensus 40 ~~~~~~ivG~~~~~~~l~~l~~~-------~~~~--~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 40 RQASQGMVGQLAARRAAGVVLEM-------IREG--KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp CSEETTEESCHHHHHHHHHHHHH-------HHTT--CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred CcchhhccChHHHHHHHHHHHHH-------HHcC--CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 44599999999999887665532 1112 224578999999999999999999999974 888888766433
Q ss_pred cccc-------------------------------------------------chHHHHHHHHHHHhc---------cCC
Q 001031 1023 KWFG-------------------------------------------------EGEKYVKAVFSLASK---------IAP 1044 (1183)
Q Consensus 1023 ~~~G-------------------------------------------------esE~~Ir~lF~~A~k---------~~P 1044 (1183)
.+.+ .....++..|..+.. ..|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 3222 123344444444322 126
Q ss_pred eEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEec-----------CCCCCCcHHHHhccCcE
Q 001031 1045 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-----------NRPFDLDEAVVRRLPRR 1113 (1183)
Q Consensus 1045 sILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTT-----------N~p~~Ld~aLlrRFd~v 1113 (1183)
+||||||||.|. ....+.|+..++.. ..+++++++. |.+..+++++++||. .
T Consensus 191 ~vl~IDEi~~l~------------~~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~-~ 253 (368)
T 3uk6_A 191 GVLFIDEVHMLD------------IESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLL-I 253 (368)
T ss_dssp CEEEEESGGGSB------------HHHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEE-E
T ss_pred ceEEEhhccccC------------hHHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCCCcccCCHHHHhhcc-E
Confidence 899999999882 22334455444432 2345555554 357889999999994 5
Q ss_pred EEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHH
Q 001031 1114 LMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIRE 1172 (1183)
Q Consensus 1114 I~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire 1172 (1183)
+.++.|+.+++.++++..+...... ++..+..|+..+.+.+++++.++|+.|+..|..+
T Consensus 254 i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~ 313 (368)
T 3uk6_A 254 VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR 313 (368)
T ss_dssp EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999998875543 5667889999998668999999999998877543
No 44
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.70 E-value=8.3e-17 Score=181.75 Aligned_cols=218 Identities=18% Similarity=0.268 Sum_probs=166.7
Q ss_pred CccccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhc-CCeEEEE
Q 001031 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHF-SARLLIV 525 (1183)
Q Consensus 447 ~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f-~a~LLil 525 (1183)
+..+|+|+++--+ +..|..|.++.-.+++++++ |.. .....+.|||.||+| ....+||||+|+++ +++++.+
T Consensus 5 ~~~~~~~~di~G~--~~~k~~l~~~v~~p~~~~~~--~~~-~~~~~~~iLL~GppG--tGKT~la~ala~~~~~~~~~~i 77 (322)
T 1xwi_A 5 ERPNVKWSDVAGL--EGAKEALKEAVILPIKFPHL--FTG-KRTPWRGILLFGPPG--TGKSYLAKAVATEANNSTFFSI 77 (322)
T ss_dssp ECCCCCGGGSCSC--HHHHHHHHHHHHHHHHCGGG--SCT-TCCCCSEEEEESSSS--SCHHHHHHHHHHHTTSCEEEEE
T ss_pred cCCCCCHHHhcCH--HHHHHHHHHHHHHHHhCHHH--HhC-CCCCCceEEEECCCC--ccHHHHHHHHHHHcCCCcEEEE
Confidence 3457899998887 99999999999889999887 433 334567899999999 78999999999998 6666665
Q ss_pred ecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCce
Q 001031 526 DSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRV 605 (1183)
Q Consensus 526 Ds~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrv 605 (1183)
+...+.+.+.
T Consensus 78 ~~~~l~~~~~---------------------------------------------------------------------- 87 (322)
T 1xwi_A 78 SSSDLVSKWL---------------------------------------------------------------------- 87 (322)
T ss_dssp ECCSSCCSSC----------------------------------------------------------------------
T ss_pred EhHHHHhhhh----------------------------------------------------------------------
Confidence 5433221100
Q ss_pred eeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchh
Q 001031 606 KFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEV 685 (1183)
Q Consensus 606 k~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~ 685 (1183)
| .
T Consensus 88 ---g---------------------------------------------------------------------------~ 89 (322)
T 1xwi_A 88 ---G---------------------------------------------------------------------------E 89 (322)
T ss_dssp ---C---------------------------------------------------------------------------S
T ss_pred ---h---------------------------------------------------------------------------H
Confidence 0 0
Q ss_pred HHHHHHHHHHHHhhccCCCCEEEEEcChhhhhcCC----h----hhHHHHHHHHhcC---CCCEEEEEeccCCCcccccC
Q 001031 686 DKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN----N----DAYGALKSKLENL---PSNVVVIGSHTQLDSRKEKS 754 (1183)
Q Consensus 686 ~k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~~----~----~~~~~i~~~L~~L---~g~vivIgs~~~~d~~k~k~ 754 (1183)
....+..+|+.+.. .+|.||||||+|.+.... . ++.+.+-..|+.+ .++|+|||++|
T Consensus 90 ~~~~~~~lf~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn--------- 157 (322)
T 1xwi_A 90 SEKLVKNLFQLARE---NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATN--------- 157 (322)
T ss_dssp CHHHHHHHHHHHHH---TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEES---------
T ss_pred HHHHHHHHHHHHHh---cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecC---------
Confidence 01235667777665 789999999999976521 1 2333344445544 46899999999
Q ss_pred CCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHHHHHHHHhhhhhhhhhcc
Q 001031 755 HPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQS 834 (1183)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~ 834 (1183)
.|+.+|+ +++|||++.+++++|+...|.
T Consensus 158 ---------------------~~~~ld~-------------------------------al~rRf~~~i~i~~P~~~~r~ 185 (322)
T 1xwi_A 158 ---------------------IPWVLDS-------------------------------AIRRRFEKRIYIPLPEPHARA 185 (322)
T ss_dssp ---------------------CTTTSCH-------------------------------HHHHTCCEEEECCCCCHHHHH
T ss_pred ---------------------CcccCCH-------------------------------HHHhhcCeEEEeCCcCHHHHH
Confidence 5566665 899999999999999999999
Q ss_pred chhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhc
Q 001031 835 NIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 883 (1183)
Q Consensus 835 ~Il~IHT~l~~~~l~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~ 883 (1183)
+|++.|.......+++.+++.|+..+.||+|+||+.||+.|...++.+.
T Consensus 186 ~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~ 234 (322)
T 1xwi_A 186 AMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKV 234 (322)
T ss_dssp HHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999986544445688999999999999999999999999999998764
No 45
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.69 E-value=3.7e-17 Score=178.80 Aligned_cols=181 Identities=22% Similarity=0.260 Sum_probs=131.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc-cccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCC
Q 001031 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT-SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE 1060 (1183)
Q Consensus 982 kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~-s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~ 1060 (1183)
.++.++||+||||||||++|+++|+.++.+|+.+++++.. +...+.....++.+|..+....++||||||||.|++.+.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~ 141 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVP 141 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCC
Confidence 4557899999999999999999999999999999887522 211122335788899999888899999999999976543
Q ss_pred CcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcH-HHHhccCcEEEecCCCHHHHHHHHHHHHhhccCCC
Q 001031 1061 NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDE-AVVRRLPRRLMVNLPDAPNREKIIRVILAKEELAS 1139 (1183)
Q Consensus 1061 ~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~-aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~~ 1139 (1183)
... .....+++.|...+++... ...+++||+|||.++.+++ .+.+||...+.+ |+..+|.+|...+..... ..
T Consensus 142 ~~~--~~~~~~l~~L~~~~~~~~~-~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~--p~l~~r~~i~~i~~~~~~-~~ 215 (272)
T 1d2n_A 142 IGP--RFSNLVLQALLVLLKKAPP-QGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHV--PNIATGEQLLEALELLGN-FK 215 (272)
T ss_dssp TTT--BCCHHHHHHHHHHTTCCCS-TTCEEEEEEEESCHHHHHHTTCTTTSSEEEEC--CCEEEHHHHHHHHHHHTC-SC
T ss_pred CCh--hHHHHHHHHHHHHhcCccC-CCCCEEEEEecCChhhcchhhhhcccceEEcC--CCccHHHHHHHHHHhcCC-CC
Confidence 211 1123445555555655432 3467899999999988887 677899866655 555555555555544433 46
Q ss_pred hhhHHHHHHHcCCC----cHHHHHHHHHHHHHH
Q 001031 1140 DVDLEGIANMADGY----SGSDLKNLCVTAAHC 1168 (1183)
Q Consensus 1140 didl~~LA~~TeGy----Sg~DL~~L~~~Aa~~ 1168 (1183)
+.++..++..+.|| ..+++.++++.|...
T Consensus 216 ~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~ 248 (272)
T 1d2n_A 216 DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQM 248 (272)
T ss_dssp HHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHHHhhh
Confidence 77799999999998 678888888887753
No 46
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.69 E-value=6.6e-16 Score=173.48 Aligned_cols=194 Identities=19% Similarity=0.227 Sum_probs=143.3
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1025 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~ 1025 (1183)
.+|++++|.+.+++.+...+..... . ..+..+|||+||||||||++|+++|+.++.+|+.+++..+..
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~-------~--~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~--- 93 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKK-------R--NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK--- 93 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHH-------T--TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS---
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHh-------c--CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc---
Confidence 4799999999999999988864221 0 234468999999999999999999999999999999876531
Q ss_pred cchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCc--------------ccCCCCEE
Q 001031 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR--------------TKDKERVL 1091 (1183)
Q Consensus 1026 GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~--------------~k~~~~Vl 1091 (1183)
...+..++.. ...+++|||||||.+. ...+ ..++..++... .....+++
T Consensus 94 ---~~~~~~~~~~--~~~~~vl~lDEi~~l~-----~~~~-------~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 94 ---SGDLAAILTN--LSEGDILFIDEIHRLS-----PAIE-------EVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp ---HHHHHHHHHT--CCTTCEEEEETGGGCC-----HHHH-------HHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred ---hhHHHHHHHh--ccCCCEEEEechhhcC-----HHHH-------HHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 2233344432 3467999999999882 1222 22222222111 00112589
Q ss_pred EEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHh
Q 001031 1092 VLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1169 (1183)
Q Consensus 1092 VIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~~A 1169 (1183)
+|++||....+++++++||+.++.++.|+.+++..+++.++....+. ++..+..|+..+.| ..+.+.+++..+...+
T Consensus 157 ~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDFA 234 (338)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHHH
T ss_pred EEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998876543 55667888886665 5678888888776444
No 47
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.67 E-value=1.2e-16 Score=182.41 Aligned_cols=227 Identities=20% Similarity=0.292 Sum_probs=156.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhh-cCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccc-cccc
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFC-KGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSK-WFGE 1027 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~-k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~-~~Ge 1027 (1183)
.|+|++.+++.+...+.....+..... ......++.+|||+||||||||++|++||+.++.+|+.++++++... |+|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 368999999999888853332211111 11223456789999999999999999999999999999999887643 6776
Q ss_pred h-HHHHHHHHHHH----hccCCeEEEEeCCcccccCCCCcc--hHHHHHHHHHHHHHhhcCCcc---------c------
Q 001031 1028 G-EKYVKAVFSLA----SKIAPSVVFVDEVDSMLGRRENPG--EHEAMRKMKNEFMVNWDGLRT---------K------ 1085 (1183)
Q Consensus 1028 s-E~~Ir~lF~~A----~k~~PsILfIDEID~Ll~~r~~~~--~~e~l~~il~~LL~~Ldgl~~---------k------ 1085 (1183)
. ...+..+|..+ ....++||||||||.+...+.... .......+.+.|+..+++... .
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 56677787766 445679999999999976544321 111223366677777763210 0
Q ss_pred --CCCCEEEEEecCCC----------CC-----------------------------------CcHHHHhccCcEEEecC
Q 001031 1086 --DKERVLVLAATNRP----------FD-----------------------------------LDEAVVRRLPRRLMVNL 1118 (1183)
Q Consensus 1086 --~~~~VlVIaTTN~p----------~~-----------------------------------Ld~aLlrRFd~vI~I~l 1118 (1183)
...++++|+++|.. .. +.++|+.||+.++.+..
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~p 255 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNE 255 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCC
Confidence 11334555555432 11 78999999999999999
Q ss_pred CCHHHHHHHHHH----HHhh-------ccC---CChhhHHHHHH--HcCCCcHHHHHHHHHHHHHHhHHHHHhh
Q 001031 1119 PDAPNREKIIRV----ILAK-------EEL---ASDVDLEGIAN--MADGYSGSDLKNLCVTAAHCPIREILEK 1176 (1183)
Q Consensus 1119 Pd~eeR~eILk~----iL~k-------~~l---~~didl~~LA~--~TeGySg~DL~~L~~~Aa~~Aire~le~ 1176 (1183)
|+.+++.+|+.. ++.+ ... ..+..++.|+. ....+..++|+++++.+...++.++...
T Consensus 256 l~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~ 329 (363)
T 3hws_A 256 LSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSM 329 (363)
T ss_dssp CCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccc
Confidence 999999998886 3322 111 14455777775 3345667999999999999998877554
No 48
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.65 E-value=2.8e-16 Score=152.54 Aligned_cols=105 Identities=27% Similarity=0.465 Sum_probs=92.2
Q ss_pred CccceeccccC--CCCceeeecceeEEccCCccceeecCC-CCCccceEEEEeecCCcceEEEEEecCCceEEEcCeecC
Q 001031 132 IPWARLISQCS--QNSHLSMTGAVFTVGHNRQCDLYLKDP-SISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHP 208 (1183)
Q Consensus 132 ~pW~rL~s~~~--~~p~~~i~~~~~t~G~~~~cd~~l~d~-~~s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vNg~~~~ 208 (1183)
.|||+|+++.. ..+.+.+....++|||+..||+.|.|+ .+|..||+|....++|. ++|+|.|+||| +|||+++.
T Consensus 2 ~~wg~L~~~~~~~~~~~~~l~~~~~~iGR~~~~di~l~~~~~vSr~Ha~i~~~~~~~~--~~l~D~S~NGt-~vng~~l~ 78 (116)
T 1lgp_A 2 QPWGRLLRLGAEEGEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDHCRIVVDEKSGQ--VTLEDTSTSGT-VINKLKVV 78 (116)
T ss_dssp CCCEEECCTTCCSSSCCEEECSSEEEEESSTTSSEECTTCTTSCTTCEEEEECTTTCC--EEEEECSSSCC-CCCCCCCC
T ss_pred CCEEEEEEeCCCCCccEEEECCCCEEECCCCCCCEEeCCCCCCChhHeEEEEECCCCe--EEEEECCcCCc-EECCEEcC
Confidence 49999999864 566899999999999999999999885 89999999997644554 78899888999 79999999
Q ss_pred CCceEEeeCCCEEEEccCC-----CeeEEeeecCcc
Q 001031 209 KDSQVVLRGGDELVFSPSG-----KHSYIFQQLSDD 239 (1183)
Q Consensus 209 k~~~~~L~~gDev~f~~~~-----~~ayifq~l~~~ 239 (1183)
++..+.|+.||+|.|+... +.+|+|+++..+
T Consensus 79 ~~~~~~L~~GD~i~~G~~~~~~~~~~~f~f~~~~~~ 114 (116)
T 1lgp_A 79 KKQTCPLQTGDVIYLVYRKNEPEHNVAYLYESLSEK 114 (116)
T ss_dssp CSSCCCCCTTCEEEEECCSSCGGGCEEEECCCSCC-
T ss_pred CCCcEECCCCCEEEEeccCCCCCceEEEEEEccccc
Confidence 9999999999999999875 789999988654
No 49
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.65 E-value=2.8e-16 Score=179.68 Aligned_cols=229 Identities=19% Similarity=0.280 Sum_probs=161.6
Q ss_pred HHHHHhhcccCCCccccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHH
Q 001031 435 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 514 (1183)
Q Consensus 435 ~k~~l~~~i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKAL 514 (1183)
+++.+...| ..+.-.++|+++..+ +..|..|..+...+++++++ |.. .....+.|||.||+| ....+|||||
T Consensus 33 ~~~~~~~~~-~~~~~~~~~~di~G~--~~~~~~l~~~v~~~~~~~~~--~~~-~~~~~~~iLL~GppG--tGKT~la~al 104 (355)
T 2qp9_X 33 LRGALSSAI-LSEKPNVKWEDVAGL--EGAKEALKEAVILPVKFPHL--FKG-NRKPTSGILLYGPPG--TGKSYLAKAV 104 (355)
T ss_dssp ---------------CCCGGGSCCG--GGHHHHHHHHTHHHHHCGGG--GCS-SCCCCCCEEEECSTT--SCHHHHHHHH
T ss_pred HHHHHhhhh-cccCCCCCHHHhCCH--HHHHHHHHHHHHHHHhCHHH--Hhc-CCCCCceEEEECCCC--CcHHHHHHHH
Confidence 344444333 345668999998776 89999999999889998877 333 334567899999999 7899999999
Q ss_pred HhhcCCeEEEEecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccc
Q 001031 515 AKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASS 594 (1183)
Q Consensus 515 A~~f~a~LLilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 594 (1183)
|++++.+++.++...+.+.
T Consensus 105 a~~~~~~~~~v~~~~l~~~------------------------------------------------------------- 123 (355)
T 2qp9_X 105 ATEANSTFFSVSSSDLVSK------------------------------------------------------------- 123 (355)
T ss_dssp HHHHTCEEEEEEHHHHHSC-------------------------------------------------------------
T ss_pred HHHhCCCEEEeeHHHHhhh-------------------------------------------------------------
Confidence 9999988877754321110
Q ss_pred cccccccCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCccccccc
Q 001031 595 KNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASS 674 (1183)
Q Consensus 595 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~ 674 (1183)
|+|.
T Consensus 124 ------------~~g~---------------------------------------------------------------- 127 (355)
T 2qp9_X 124 ------------WMGE---------------------------------------------------------------- 127 (355)
T ss_dssp ------------C-------------------------------------------------------------------
T ss_pred ------------hcch----------------------------------------------------------------
Confidence 0000
Q ss_pred ccccCCCcchhHHHHHHHHHHHHhhccCCCCEEEEEcChhhhhcC----C----hhhHHHHHHHHhcC---CCCEEEEEe
Q 001031 675 LRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG----N----NDAYGALKSKLENL---PSNVVVIGS 743 (1183)
Q Consensus 675 ~~~d~~~~~~~~k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~----~----~~~~~~i~~~L~~L---~g~vivIgs 743 (1183)
....++.+|+.+.. ..|.||||+|+|.+... . .++.+.+...|+.+ ..+|+|||+
T Consensus 128 -----------~~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~a 193 (355)
T 2qp9_X 128 -----------SEKLVKQLFAMARE---NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGA 193 (355)
T ss_dssp -----------CHHHHHHHHHHHHH---TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEE
T ss_pred -----------HHHHHHHHHHHHHH---cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEee
Confidence 01125666776655 78999999999997652 1 22334444445544 468999999
Q ss_pred ccCCCcccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHHHHHHHH
Q 001031 744 HTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQL 823 (1183)
Q Consensus 744 ~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~ 823 (1183)
+| .|+.+++ +++|||++.+
T Consensus 194 tn------------------------------~~~~ld~-------------------------------al~rRf~~~i 212 (355)
T 2qp9_X 194 TN------------------------------IPWQLDS-------------------------------AIRRRFERRI 212 (355)
T ss_dssp ES------------------------------CGGGSCH-------------------------------HHHHTCCEEE
T ss_pred cC------------------------------CcccCCH-------------------------------HHHcccCEEE
Confidence 99 4444554 8888998899
Q ss_pred hhhhhhhhhccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhc
Q 001031 824 ERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 883 (1183)
Q Consensus 824 e~~Lpd~~gR~~Il~IHT~l~~~~l~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~ 883 (1183)
++++|+...|..|++.|.......+.+.+++.|+..+.||+|+||+.+|..|+..++.+.
T Consensus 213 ~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~ 272 (355)
T 2qp9_X 213 YIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 272 (355)
T ss_dssp ECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999885533334678899999999999999999999999999999764
No 50
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.64 E-value=3e-16 Score=176.55 Aligned_cols=219 Identities=19% Similarity=0.240 Sum_probs=167.6
Q ss_pred CccccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001031 447 ENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1183)
Q Consensus 447 ~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilD 526 (1183)
+.-+++|+++.-+ +..|..|..+...+++++++.+ .. ....+.|||.||+| ....+||||+|++.+++++.++
T Consensus 11 ~~~~~~~~di~G~--~~~~~~l~~~i~~~~~~~~~~~--~~-~~~~~~vLl~GppG--tGKT~la~aia~~~~~~~~~v~ 83 (322)
T 3eie_A 11 EKPNVKWEDVAGL--EGAKEALKEAVILPVKFPHLFK--GN-RKPTSGILLYGPPG--TGKSYLAKAVATEANSTFFSVS 83 (322)
T ss_dssp ECCCCCGGGSCSC--HHHHHHHHHHTHHHHHCGGGCC--TT-CCCCCEEEEECSSS--SCHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCCHHHhcCh--HHHHHHHHHHHHHHHhCHHHHh--cC-CCCCCeEEEECCCC--CcHHHHHHHHHHHHCCCEEEEc
Confidence 4457899998877 9999999999988888887633 32 33467899999999 6899999999999988877765
Q ss_pred cCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCcee
Q 001031 527 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 606 (1183)
Q Consensus 527 s~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk 606 (1183)
...+.+.
T Consensus 84 ~~~l~~~------------------------------------------------------------------------- 90 (322)
T 3eie_A 84 SSDLVSK------------------------------------------------------------------------- 90 (322)
T ss_dssp HHHHHTT-------------------------------------------------------------------------
T ss_pred hHHHhhc-------------------------------------------------------------------------
Confidence 4221110
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhH
Q 001031 607 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 686 (1183)
Q Consensus 607 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 686 (1183)
|....
T Consensus 91 ---------------------------------------------------------------------------~~g~~ 95 (322)
T 3eie_A 91 ---------------------------------------------------------------------------WMGES 95 (322)
T ss_dssp ---------------------------------------------------------------------------TGGGH
T ss_pred ---------------------------------------------------------------------------ccchH
Confidence 00011
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEEcChhhhhcCC--------hhhHHHHHHHHhcC---CCCEEEEEeccCCCcccccCC
Q 001031 687 KLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENL---PSNVVVIGSHTQLDSRKEKSH 755 (1183)
Q Consensus 687 k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~~--------~~~~~~i~~~L~~L---~g~vivIgs~~~~d~~k~k~~ 755 (1183)
...+..+|+.+.. .+|.||||||+|.+.... .++...+...|+.+ .++|+|||+||
T Consensus 96 ~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn---------- 162 (322)
T 3eie_A 96 EKLVKQLFAMARE---NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATN---------- 162 (322)
T ss_dssp HHHHHHHHHHHHH---TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEES----------
T ss_pred HHHHHHHHHHHHh---cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecC----------
Confidence 2236667777766 789999999999976532 23344455555544 56899999999
Q ss_pred CCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHHHHHHHHhhhhhhhhhccc
Q 001031 756 PGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSN 835 (1183)
Q Consensus 756 ~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~ 835 (1183)
.|+.+|+ +++|||++.+++++|+...|.+
T Consensus 163 --------------------~~~~ld~-------------------------------al~~Rf~~~i~~~~p~~~~r~~ 191 (322)
T 3eie_A 163 --------------------IPWQLDS-------------------------------AIRRRFERRIYIPLPDLAARTT 191 (322)
T ss_dssp --------------------CGGGSCH-------------------------------HHHHHCCEEEECCCCCHHHHHH
T ss_pred --------------------ChhhCCH-------------------------------HHHcccCeEEEeCCCCHHHHHH
Confidence 4455554 8999999999999999999999
Q ss_pred hhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhcc
Q 001031 836 IISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCS 884 (1183)
Q Consensus 836 Il~IHT~l~~~~l~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~ 884 (1183)
|++.|.......+.+.+++.|+..+.||+|+||+.+|..|...++.+..
T Consensus 192 il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~ 240 (322)
T 3eie_A 192 MFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 240 (322)
T ss_dssp HHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999855433346888999999999999999999999999999998753
No 51
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.64 E-value=1.2e-15 Score=184.02 Aligned_cols=211 Identities=21% Similarity=0.281 Sum_probs=139.9
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-----
Q 001031 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS----- 1022 (1183)
Q Consensus 948 fdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s----- 1022 (1183)
.++++|+++++..+.+.+...... . ..+...+||+||||||||+||++||..++.++..+++..+..
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~------~--~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLT------K--SLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHS------S--SCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhc------c--cCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhh
Confidence 357999999999998776532211 1 114568999999999999999999999999999998876433
Q ss_pred ----ccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCccc-----------CC
Q 001031 1023 ----KWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK-----------DK 1087 (1183)
Q Consensus 1023 ----~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k-----------~~ 1087 (1183)
.+.|.....+...|..+....| ||||||||.+...... ...+.|+..++..... ..
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~--------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG--------DPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp ------------CHHHHHHTTCSSSE-EEEEEESSSCC-----------------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred hHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc--------CHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 4556666677778888776665 9999999998533211 1234455555432211 11
Q ss_pred CCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhh-----ccC------CChhhHHHHHHHcCC-CcH
Q 001031 1088 ERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-----EEL------ASDVDLEGIANMADG-YSG 1155 (1183)
Q Consensus 1088 ~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k-----~~l------~~didl~~LA~~TeG-ySg 1155 (1183)
.+++||+|||.++.++++|++|| .++.++.|+.+++.+|++.++.. ..+ .++..+..|+....+ ...
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~v 301 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRDRM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGV 301 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHHHE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSS
T ss_pred cceEEEeccCccccCCHHHHhhc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhch
Confidence 56899999999999999999999 68999999999999999987632 222 134445666654443 445
Q ss_pred HHHHHHHHHHHHHhHHHHHhh
Q 001031 1156 SDLKNLCVTAAHCPIREILEK 1176 (1183)
Q Consensus 1156 ~DL~~L~~~Aa~~Aire~le~ 1176 (1183)
++|++.+..++..+..+.+..
T Consensus 302 R~L~~~i~~~~~~aa~~~~~~ 322 (543)
T 3m6a_A 302 RSLERQLAAICRKAAKAIVAE 322 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHhc
Confidence 666666666665555555443
No 52
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.62 E-value=3e-15 Score=166.51 Aligned_cols=202 Identities=20% Similarity=0.232 Sum_probs=141.7
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1025 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~ 1025 (1183)
.+|++++|.+..++.+.+.+..... . ..++.++||+||||||||++|+++++.++.+++.++++.+..
T Consensus 9 ~~~~~~ig~~~~~~~l~~~l~~~~~-------~--~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 9 KTLDEYIGQERLKQKLRVYLEAAKA-------R--KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHHHH-------H--CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred ccHHHhhCHHHHHHHHHHHHHHHHc-------c--CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 4789999999999999887753211 0 123468999999999999999999999999999999876532
Q ss_pred cchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcc-------cCCCCEEEEEecCC
Q 001031 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-------KDKERVLVLAATNR 1098 (1183)
Q Consensus 1026 GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~-------k~~~~VlVIaTTN~ 1098 (1183)
...+...|..+ ...+++|||||||.+. ...+..+..+++.....+-+... ....++++|++||.
T Consensus 77 ---~~~l~~~l~~~-~~~~~~l~lDEi~~l~-----~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~ 147 (324)
T 1hqc_A 77 ---PGDLAAILANS-LEEGDILFIDEIHRLS-----RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTR 147 (324)
T ss_dssp ---HHHHHHHHTTT-CCTTCEEEETTTTSCC-----HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESC
T ss_pred ---hHHHHHHHHHh-ccCCCEEEEECCcccc-----cchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCC
Confidence 22233333321 2457899999999872 11222222222211000000000 01135889999999
Q ss_pred CCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHh
Q 001031 1099 PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1169 (1183)
Q Consensus 1099 p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~~A 1169 (1183)
+..+++++.+||..++.++.|+.+++..+++.++...+.. ++..+..|+..+.| .++.+.++++.+...+
T Consensus 148 ~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 148 PGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDFA 218 (324)
T ss_dssp CSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTTTS
T ss_pred cccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 9999999999998899999999999999999998765543 55668889999866 4578888888775443
No 53
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.61 E-value=1.2e-15 Score=179.47 Aligned_cols=229 Identities=20% Similarity=0.317 Sum_probs=161.1
Q ss_pred HHHHHhhcccCCCccccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHH
Q 001031 435 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 514 (1183)
Q Consensus 435 ~k~~l~~~i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKAL 514 (1183)
+.+.+.+.|+ .+...++|+++.-+ +..|..|.++.-.+++++++ |.. .....+.|||.||+| ....+|||||
T Consensus 116 ~~~~~~~~i~-~~~~~~~~~di~G~--~~~k~~l~~~v~~p~~~~~~--~~~-~~~~~~~vLL~GppG--tGKT~lA~ai 187 (444)
T 2zan_A 116 LQNQLQGAIV-IERPNVKWSDVAGL--EGAKEALKEAVILPIKFPHL--FTG-KRTPWRGILLFGPPG--TGKSYLAKAV 187 (444)
T ss_dssp --------CB-CCCCCCCGGGSCSC--HHHHHHHHHHHTHHHHCTTT--TSG-GGCCCSEEEEECSTT--SSHHHHHHHH
T ss_pred HHHHhhccee-ccCCCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHH--hhc-cCCCCceEEEECCCC--CCHHHHHHHH
Confidence 3444444444 45668999998776 89999999998888888776 332 233457899999999 7999999999
Q ss_pred Hhhc-CCeEEEEecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCccccc
Q 001031 515 AKHF-SARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTAS 593 (1183)
Q Consensus 515 A~~f-~a~LLilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 593 (1183)
|+++ +++++.++...+.+.
T Consensus 188 a~~~~~~~~~~v~~~~l~~~------------------------------------------------------------ 207 (444)
T 2zan_A 188 ATEANNSTFFSISSSDLVSK------------------------------------------------------------ 207 (444)
T ss_dssp HHHCCSSEEEEECCC-----------------------------------------------------------------
T ss_pred HHHcCCCCEEEEeHHHHHhh------------------------------------------------------------
Confidence 9998 777766654332211
Q ss_pred ccccccccCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccc
Q 001031 594 SKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTAS 673 (1183)
Q Consensus 594 ~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~ 673 (1183)
|+|..
T Consensus 208 -------------~~g~~-------------------------------------------------------------- 212 (444)
T 2zan_A 208 -------------WLGES-------------------------------------------------------------- 212 (444)
T ss_dssp -----------------C--------------------------------------------------------------
T ss_pred -------------hcchH--------------------------------------------------------------
Confidence 11100
Q ss_pred cccccCCCcchhHHHHHHHHHHHHhhccCCCCEEEEEcChhhhhcC----ChhhHHHHHHHH----hcC---CCCEEEEE
Q 001031 674 SLRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTG----NNDAYGALKSKL----ENL---PSNVVVIG 742 (1183)
Q Consensus 674 ~~~~d~~~~~~~~k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~----~~~~~~~i~~~L----~~L---~g~vivIg 742 (1183)
...+..+|+.+.. .+|.||||||+|.+... ..+....++..| +.+ .++|+|||
T Consensus 213 -------------~~~~~~~f~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~ 276 (444)
T 2zan_A 213 -------------EKLVKNLFQLARE---NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLG 276 (444)
T ss_dssp -------------CCTHHHHHHHHHH---SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEE
T ss_pred -------------HHHHHHHHHHHHH---cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEe
Confidence 0014566666655 78999999999997652 122223333333 332 45899999
Q ss_pred eccCCCcccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHHHHHHH
Q 001031 743 SHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQ 822 (1183)
Q Consensus 743 s~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq 822 (1183)
+|| .|+.+++ +++|||++.
T Consensus 277 atn------------------------------~~~~ld~-------------------------------al~rRf~~~ 295 (444)
T 2zan_A 277 ATN------------------------------IPWVLDS-------------------------------AIRRRFEKR 295 (444)
T ss_dssp EES------------------------------CGGGSCH-------------------------------HHHTTCCEE
T ss_pred cCC------------------------------CccccCH-------------------------------HHHhhcceE
Confidence 999 4444554 888899888
Q ss_pred HhhhhhhhhhccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhc
Q 001031 823 LERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 883 (1183)
Q Consensus 823 ~e~~Lpd~~gR~~Il~IHT~l~~~~l~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~ 883 (1183)
+++++|+...|..|+++|..-....+.+.+++.|+..+.||+|+||+.+|+.|+..++.+.
T Consensus 296 i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~ 356 (444)
T 2zan_A 296 IYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKV 356 (444)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHH
T ss_pred EEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999985433333578899999999999999999999999999998764
No 54
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.61 E-value=1.5e-14 Score=170.08 Aligned_cols=226 Identities=21% Similarity=0.309 Sum_probs=158.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc-ccccc-
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS-KWFGE- 1027 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s-~~~Ge- 1027 (1183)
+|+|++++++.|...+..++.++.++.......+++++||+||||||||++|+++|+.++.+|+.++++.+.. .|+|.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 6899999999999999877766665544333345688999999999999999999999999999999988877 48884
Q ss_pred hHHHHHHHHHHHh-------------------------------------------------------------------
Q 001031 1028 GEKYVKAVFSLAS------------------------------------------------------------------- 1040 (1183)
Q Consensus 1028 sE~~Ir~lF~~A~------------------------------------------------------------------- 1040 (1183)
.+..++.+|..|.
T Consensus 96 ~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~i 175 (444)
T 1g41_A 96 VDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEI 175 (444)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHSCC-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEEE
Confidence 6777777665441
Q ss_pred -----------------------------------------------------------------------cc-CCeEEE
Q 001031 1041 -----------------------------------------------------------------------KI-APSVVF 1048 (1183)
Q Consensus 1041 -----------------------------------------------------------------------k~-~PsILf 1048 (1183)
+. ..+|||
T Consensus 176 ~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il~ 255 (444)
T 1g41_A 176 DVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIVF 255 (444)
T ss_dssp --------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEEE
T ss_pred cCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCeee
Confidence 00 235899
Q ss_pred EeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCccc------CCCCEEEEEec----CCCCCCcHHHHhccCcEEEecC
Q 001031 1049 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK------DKERVLVLAAT----NRPFDLDEAVVRRLPRRLMVNL 1118 (1183)
Q Consensus 1049 IDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k------~~~~VlVIaTT----N~p~~Ld~aLlrRFd~vI~I~l 1118 (1183)
+||||.+.....+....-...-+.+.|+..+++.... +..+|++|+|. +.+.++.++|+.||+.++.++.
T Consensus 256 ~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l~~ 335 (444)
T 1g41_A 256 IDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTA 335 (444)
T ss_dssp EETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECCC
T ss_pred HHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeCCC
Confidence 9999999754322111112223556677777763211 34679999987 3445566899999998999999
Q ss_pred CCHHHHHHHHH--------HH---Hhhcc--C-CChhhHHHHHHH-------cCCCcHHHHHHHHHHHHHHhHHHHHh
Q 001031 1119 PDAPNREKIIR--------VI---LAKEE--L-ASDVDLEGIANM-------ADGYSGSDLKNLCVTAAHCPIREILE 1175 (1183)
Q Consensus 1119 Pd~eeR~eILk--------~i---L~k~~--l-~~didl~~LA~~-------TeGySg~DL~~L~~~Aa~~Aire~le 1175 (1183)
++.++..+|+. .+ +...+ + ..+..+..|++. |...-.+.|+.++..+......++.+
T Consensus 336 lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~ 413 (444)
T 1g41_A 336 LSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASD 413 (444)
T ss_dssp CCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhccc
Confidence 99999999983 11 11111 1 144556666653 45666778888888777776666543
No 55
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.61 E-value=7.5e-15 Score=162.33 Aligned_cols=211 Identities=16% Similarity=0.232 Sum_probs=144.2
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc---
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--- 1023 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~--- 1023 (1183)
+++|++.+++.+...+...... . ..-.+|...+||+||||||||++|++||+.+ +.+++.++|+.+...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~---~--~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAG---L--KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHT---C--SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcC---C--CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 5789999999988877642110 0 0112344679999999999999999999998 667999998775432
Q ss_pred --cccchHH----H-HHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcc-------cCCCC
Q 001031 1024 --WFGEGEK----Y-VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT-------KDKER 1089 (1183)
Q Consensus 1024 --~~GesE~----~-Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~-------k~~~~ 1089 (1183)
++|.... . ...+.........+||||||||.+- + .+.+.|+..++.... ..-.+
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~-----~-------~~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH-----P-------DVFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC-----H-------HHHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC-----H-------HHHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 1111000 0 0112223334455899999999882 1 223333333332111 11146
Q ss_pred EEEEEecCC--------------------------CCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhc--------
Q 001031 1090 VLVLAATNR--------------------------PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE-------- 1135 (1183)
Q Consensus 1090 VlVIaTTN~--------------------------p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~-------- 1135 (1183)
+++|+|||. ...++++|++||+.++.+.+|+.+++..|++.++.+.
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~ 240 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKR 240 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTT
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 789999998 4568899999999999999999999999999988652
Q ss_pred -cC-CChhhHHHHHHHcC--CCcHHHHHHHHHHHHHHhHHHHHhhh
Q 001031 1136 -EL-ASDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIREILEKE 1177 (1183)
Q Consensus 1136 -~l-~~didl~~LA~~Te--GySg~DL~~L~~~Aa~~Aire~le~e 1177 (1183)
.+ .++..+..|+...- .+..++|+++++.++..++.+.+...
T Consensus 241 ~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~~ 286 (311)
T 4fcw_A 241 ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAG 286 (311)
T ss_dssp CEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHHHT
T ss_pred cEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHHhC
Confidence 11 24556778887655 57789999999999998887776544
No 56
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.59 E-value=1.9e-15 Score=152.58 Aligned_cols=158 Identities=22% Similarity=0.374 Sum_probs=113.7
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~pfi~I 1015 (1183)
..|++++|.++..+.+.+.+.. ..+.++||+||||||||++|+++++.+ +.+++.+
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred ccccccccchHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 4678999999998888876642 223679999999999999999999986 7888999
Q ss_pred ecCccc--cccccchHHHHHHHHHHHhc-cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEE
Q 001031 1016 SMSSIT--SKWFGEGEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1183)
Q Consensus 1016 ~~s~L~--s~~~GesE~~Ir~lF~~A~k-~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlV 1092 (1183)
++..+. ..+.+.....+..++..+.+ ..+.||||||+|.+............ ..++..++ . ..++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~-~~~l~~~~---~------~~~~~~ 154 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDA-GNMLKPAL---A------RGELHC 154 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCC-HHHHHHHH---H------TTSCCE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHH-HHHHHHhh---c------cCCeEE
Confidence 887765 23445566677788876643 45789999999998643321111111 12222222 1 145778
Q ss_pred EEecCCCC-----CCcHHHHhccCcEEEecCCCHHHHHHHH
Q 001031 1093 LAATNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKII 1128 (1183)
Q Consensus 1093 IaTTN~p~-----~Ld~aLlrRFd~vI~I~lPd~eeR~eIL 1128 (1183)
|++||.+. .+++++++||. .+.++.|+.++|.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 88888765 78999999996 7999999999998875
No 57
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.59 E-value=9e-14 Score=143.51 Aligned_cols=187 Identities=21% Similarity=0.227 Sum_probs=133.5
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSS 1019 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-----g~pfi~I~~s~ 1019 (1183)
...|++++|.+..++.+.+.+.. . ...++||+||+|+|||++|+++++.+ ...++.+++..
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~----------~----~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVER----------K----NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHT----------T----CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred CCCHHHHcCcHHHHHHHHHHHhC----------C----CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 35788999999999999887752 1 12359999999999999999999986 45688888765
Q ss_pred cccccccchHHHHHHHHHHH-h-----ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEE
Q 001031 1020 ITSKWFGEGEKYVKAVFSLA-S-----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1183)
Q Consensus 1020 L~s~~~GesE~~Ir~lF~~A-~-----k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVI 1093 (1183)
.... ..+...+... . ...+.||||||+|.+. .. ..+.++..++.. ..++.+|
T Consensus 79 ~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----~~-------~~~~l~~~l~~~----~~~~~~i 136 (226)
T 2chg_A 79 ERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----AD-------AQAALRRTMEMY----SKSCRFI 136 (226)
T ss_dssp TTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC-----HH-------HHHHHHHHHHHT----TTTEEEE
T ss_pred ccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcC-----HH-------HHHHHHHHHHhc----CCCCeEE
Confidence 3321 1222222222 1 2467899999999872 11 122233333221 2567889
Q ss_pred EecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHh
Q 001031 1094 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1169 (1183)
Q Consensus 1094 aTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~~A 1169 (1183)
++||.+..+++.+.+||. .+.++.|+.++..++++.++...+.. ++..+..|+..+.| ..+.+.++++.++..+
T Consensus 137 ~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~ 211 (226)
T 2chg_A 137 LSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG 211 (226)
T ss_dssp EEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC
T ss_pred EEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC
Confidence 999999999999999995 89999999999999999988765543 55567888888876 5667777777766543
No 58
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.59 E-value=8.2e-14 Score=145.09 Aligned_cols=187 Identities=24% Similarity=0.274 Sum_probs=135.7
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 1011 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p-------------- 1011 (1183)
..|++++|.+..++.|.+.+.. .+.+..+||+||+|+|||++++++++.++..
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSL-------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHH-------------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHc-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 4688999999999999887752 1233579999999999999999999987432
Q ss_pred ----------EEEEecCccccccccchHHHHHHHHHHHh----ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHH
Q 001031 1012 ----------FINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1183)
Q Consensus 1012 ----------fi~I~~s~L~s~~~GesE~~Ir~lF~~A~----k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~ 1077 (1183)
++.++... ......++.++..+. ...+.||||||+|.+. ....+.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~------------~~~~~~l~~ 148 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLK 148 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC------------HHHHHHHHH
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc------------HHHHHHHHH
Confidence 12222111 112234555555443 2357899999999872 122334444
Q ss_pred hhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHH
Q 001031 1078 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1156 (1183)
Q Consensus 1078 ~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~ 1156 (1183)
.++.. ..++.+|++|+.+..+.+.+.+|+ ..+.++.++.++..++++.++...... ++..+..|+..+.| .++
T Consensus 149 ~l~~~----~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~ 222 (250)
T 1njg_A 149 TLEEP----PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLR 222 (250)
T ss_dssp HHHSC----CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHH
T ss_pred HHhcC----CCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHH
Confidence 44432 356889999999989999999997 789999999999999999998765433 55668889999977 788
Q ss_pred HHHHHHHHHHHHh
Q 001031 1157 DLKNLCVTAAHCP 1169 (1183)
Q Consensus 1157 DL~~L~~~Aa~~A 1169 (1183)
.+.++++.|+..+
T Consensus 223 ~~~~~~~~~~~~~ 235 (250)
T 1njg_A 223 DALSLTDQAIASG 235 (250)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcc
Confidence 9999998886543
No 59
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.58 E-value=4.9e-14 Score=157.87 Aligned_cols=196 Identities=19% Similarity=0.220 Sum_probs=133.5
Q ss_pred CCCccccc-C--cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001031 945 GVTFDDIG-A--LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1183)
Q Consensus 945 ~~tfdDI~-G--le~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s 1018 (1183)
..+|++++ | .......+...+..+ .....++||+||||||||+||+++++.+ +.+++.+++.
T Consensus 7 ~~~f~~fv~g~~~~~a~~~~~~~~~~~------------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 7 KYTLENFIVGEGNRLAYEVVKEALENL------------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TCCSSSCCCCTTTHHHHHHHHHHHHTT------------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCcccCCCCCcHHHHHHHHHHHHhCc------------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 45788876 3 344455555544421 1133679999999999999999999998 8999999988
Q ss_pred ccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCC
Q 001031 1019 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1183)
Q Consensus 1019 ~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~ 1098 (1183)
++...+.+.........|..... .+.|||||||+.+.+.+ ..++.+..+++.+. .....+|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~---~~~~~l~~~l~~~~---------~~~~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE---RTQIEFFHIFNTLY---------LLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH---HHHHHHHHHHHHHH---------HTTCEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh---HHHHHHHHHHHHHH---------HCCCeEEEEecCC
Confidence 76554443332222233333333 47899999999984211 12233333333222 1134567777776
Q ss_pred CC---CCcHHHHhccC--cEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001031 1099 PF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHC 1168 (1183)
Q Consensus 1099 p~---~Ld~aLlrRFd--~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~~ 1168 (1183)
+. .+++.+++||. .++.++. +.++|.+|++.++...++. ++..+..|+..+ | ..+++.++++.++..
T Consensus 142 ~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 142 PQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp GGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 65 68999999985 6788888 9999999999998865543 556688899998 4 667888888777655
No 60
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.57 E-value=2.8e-14 Score=168.35 Aligned_cols=183 Identities=23% Similarity=0.376 Sum_probs=134.1
Q ss_pred CCcccccCcHHHH---HHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001031 946 VTFDDIGALENVK---DTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1183)
Q Consensus 946 ~tfdDI~Gle~vk---~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s 1022 (1183)
.+|++++|++.++ ..|...+.. +. ..++||+||||||||+||++|++.++.+|+.+++...
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~----------~~----~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~-- 86 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEA----------GH----LHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS-- 86 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHH----------TC----CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC--
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHc----------CC----CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC--
Confidence 5789999999998 677776652 21 1589999999999999999999999999999986442
Q ss_pred ccccchHHHHHHHHHHHh----ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEec--
Q 001031 1023 KWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT-- 1096 (1183)
Q Consensus 1023 ~~~GesE~~Ir~lF~~A~----k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTT-- 1096 (1183)
....++.+|..+. ...+.||||||||.+... ..+.|+..++. ..+++|++|
T Consensus 87 -----~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~------------~q~~LL~~le~------~~v~lI~att~ 143 (447)
T 3pvs_A 87 -----GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS------------QQDAFLPHIED------GTITFIGATTE 143 (447)
T ss_dssp -----CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------CCHHHHHT------TSCEEEEEESS
T ss_pred -----CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH------------HHHHHHHHHhc------CceEEEecCCC
Confidence 2334556665554 346799999999988311 12233333332 345666655
Q ss_pred CCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhh-------ccC-CChhhHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001031 1097 NRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK-------EEL-ASDVDLEGIANMADGYSGSDLKNLCVTAAHC 1168 (1183)
Q Consensus 1097 N~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k-------~~l-~~didl~~LA~~TeGySg~DL~~L~~~Aa~~ 1168 (1183)
|....+++++++|+ .++.+..|+.+++..+++.++.. ..+ .++..++.|+..+.| ..+++.++++.|+..
T Consensus 144 n~~~~l~~aL~sR~-~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~ 221 (447)
T 3pvs_A 144 NPSFELNSALLSRA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMADM 221 (447)
T ss_dssp CGGGSSCHHHHTTE-EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHH
T ss_pred CcccccCHHHhCce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHh
Confidence 55678999999999 58889999999999999999876 222 355668889988776 567888888888765
Q ss_pred h
Q 001031 1169 P 1169 (1183)
Q Consensus 1169 A 1169 (1183)
+
T Consensus 222 a 222 (447)
T 3pvs_A 222 A 222 (447)
T ss_dssp S
T ss_pred c
Confidence 4
No 61
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.56 E-value=5.7e-14 Score=157.00 Aligned_cols=184 Identities=17% Similarity=0.172 Sum_probs=129.4
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1025 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~ 1025 (1183)
.+|++++|++++++.|.+.+.. .+.++.+|++||||||||++|+++|+.++.+++.+++++..
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~-------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~---- 85 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSK-------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK---- 85 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHT-------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC----
T ss_pred CCHHHHhCcHHHHHHHHHHHHc-------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC----
Confidence 5799999999999999988762 23445688899999999999999999999999999986632
Q ss_pred cchHHHHHHHHHHHhcc-----CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC
Q 001031 1026 GEGEKYVKAVFSLASKI-----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF 1100 (1183)
Q Consensus 1026 GesE~~Ir~lF~~A~k~-----~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~ 1100 (1183)
...++..+...... .+.||||||+|.+.+ ...+ +.|+..++.. ..++.+|++||.+.
T Consensus 86 ---~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----~~~~-------~~L~~~le~~----~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 86 ---IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----AESQ-------RHLRSFMEAY----SSNCSIIITANNID 147 (324)
T ss_dssp ---HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----HHHH-------HHHHHHHHHH----GGGCEEEEEESSGG
T ss_pred ---HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----HHHH-------HHHHHHHHhC----CCCcEEEEEeCCcc
Confidence 23444444332222 568999999998831 1112 2222222221 14578899999999
Q ss_pred CCcHHHHhccCcEEEecCCCHHHHHHHHHHHHh-------hccCC-Ch-hhHHHHHHHcCCCcHHHHHHHHHHHH
Q 001031 1101 DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILA-------KEELA-SD-VDLEGIANMADGYSGSDLKNLCVTAA 1166 (1183)
Q Consensus 1101 ~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~-------k~~l~-~d-idl~~LA~~TeGySg~DL~~L~~~Aa 1166 (1183)
.+++++++|| .++.++.|+.++|.+|++.++. ..++. ++ ..+..|+..+.|.... +.++++.++
T Consensus 148 ~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~-a~~~L~~~~ 220 (324)
T 3u61_B 148 GIIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRK-TIGELDSYS 220 (324)
T ss_dssp GSCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTH-HHHHHHHHG
T ss_pred ccCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHH-HHHHHHHHh
Confidence 9999999999 6899999999998766555432 33332 34 6678888888775543 444444443
No 62
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.55 E-value=2.3e-14 Score=164.12 Aligned_cols=226 Identities=19% Similarity=0.256 Sum_probs=142.3
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhh----------------cCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFC----------------KGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~----------------k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi 1013 (1183)
.|+|++.+++.|...+...+.+..... ......+..++||+||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 478999999999888753333222100 0112345568999999999999999999999999999
Q ss_pred EEecCccc-cccccch-HHHHHHHHHHHh----ccCCeEEEEeCCcccccCCCCcchH--HHHHHHHHHHHHhhcCCc--
Q 001031 1014 NISMSSIT-SKWFGEG-EKYVKAVFSLAS----KIAPSVVFVDEVDSMLGRRENPGEH--EAMRKMKNEFMVNWDGLR-- 1083 (1183)
Q Consensus 1014 ~I~~s~L~-s~~~Ges-E~~Ir~lF~~A~----k~~PsILfIDEID~Ll~~r~~~~~~--e~l~~il~~LL~~Ldgl~-- 1083 (1183)
.+++..+. ..++|.. +..+..+|..+. ...++||||||||.+...+...... .....+.+.|+..+++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998865 3455543 445666665432 3367999999999996543221100 000124455555555321
Q ss_pred --c-------------cCCCCEEEEEecCC-----------------------------------------CCCCcHHHH
Q 001031 1084 --T-------------KDKERVLVLAATNR-----------------------------------------PFDLDEAVV 1107 (1183)
Q Consensus 1084 --~-------------k~~~~VlVIaTTN~-----------------------------------------p~~Ld~aLl 1107 (1183)
. -...++++|+++|. ...+.++|+
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 0 01144677777762 123678999
Q ss_pred hccCcEEEecCCCHHHHHHHHHH----HHhh---------ccC-CChhhHHHHHHHcC--CCcHHHHHHHHHHHHHHhHH
Q 001031 1108 RRLPRRLMVNLPDAPNREKIIRV----ILAK---------EEL-ASDVDLEGIANMAD--GYSGSDLKNLCVTAAHCPIR 1171 (1183)
Q Consensus 1108 rRFd~vI~I~lPd~eeR~eILk~----iL~k---------~~l-~~didl~~LA~~Te--GySg~DL~~L~~~Aa~~Air 1171 (1183)
+||+.++.++.++.++..+|+.. ++.+ ..+ .++..+..|+.... ....+.|.+++..++..++.
T Consensus 262 ~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~ 341 (376)
T 1um8_A 262 GRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMF 341 (376)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHH
T ss_pred cCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHh
Confidence 99999999999999999998862 2221 111 24555777777643 35678999999999988887
Q ss_pred HHHh
Q 001031 1172 EILE 1175 (1183)
Q Consensus 1172 e~le 1175 (1183)
+...
T Consensus 342 ~~~~ 345 (376)
T 1um8_A 342 DLPK 345 (376)
T ss_dssp TGGG
T ss_pred hccC
Confidence 7654
No 63
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.55 E-value=7.1e-14 Score=164.43 Aligned_cols=200 Identities=17% Similarity=0.243 Sum_probs=134.7
Q ss_pred CCCccccc-Cc--HHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEe
Q 001031 945 GVTFDDIG-AL--ENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINIS 1016 (1183)
Q Consensus 945 ~~tfdDI~-Gl--e~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-----g~pfi~I~ 1016 (1183)
..+|++++ |. ......+...... .+ . +.+++|+||||+|||+||++|++.+ +.+++.++
T Consensus 101 ~~tfd~fv~g~~n~~a~~~~~~~a~~----------~~--~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 101 DYTFENFVVGPGNSFAYHAALEVAKH----------PG--R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp TCSGGGCCCCTTTHHHHHHHHHHHHS----------TT--S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCChhhcCCCCchHHHHHHHHHHHhC----------CC--C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 45888876 43 3334444443331 11 1 3689999999999999999999988 88899999
Q ss_pred cCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEec
Q 001031 1017 MSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAAT 1096 (1183)
Q Consensus 1017 ~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTT 1096 (1183)
+..+...+.+.........|.......+.||||||++.+.+.+ ..++.+..+++.+. .....+||++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~---~~q~~l~~~l~~l~---------~~~~~iIitt~ 235 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT---GVQTELFHTFNELH---------DSGKQIVICSD 235 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH---HHHHHHHHHHHHHH---------TTTCEEEEEES
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh---HHHHHHHHHHHHHH---------HCCCeEEEEEC
Confidence 8776544332222111223444444468999999999984211 12233333333322 12345666665
Q ss_pred CCCCC---CcHHHHhccC--cEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhH
Q 001031 1097 NRPFD---LDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPI 1170 (1183)
Q Consensus 1097 N~p~~---Ld~aLlrRFd--~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~~Ai 1170 (1183)
+.+.. +++.+++||. .++.++.|+.++|.+|++..+...++. ++..+..|+..+.| +.+++.++++.+...+.
T Consensus 236 ~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 236 REPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_dssp SCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 65554 8899999985 689999999999999999998765443 44558889998875 78899999988877663
No 64
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.55 E-value=3.5e-13 Score=141.93 Aligned_cols=190 Identities=17% Similarity=0.154 Sum_probs=128.6
Q ss_pred CCCcccccC---cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001031 945 GVTFDDIGA---LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1183)
Q Consensus 945 ~~tfdDI~G---le~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s 1018 (1183)
..+|+++++ ...+...+..++.. ....++||+||||||||+||+++++.+ +.+++.+++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASG--------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHT--------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 357888776 24566666655431 133689999999999999999999887 4788889887
Q ss_pred ccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCE-EEEEecC
Q 001031 1019 SITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV-LVLAATN 1097 (1183)
Q Consensus 1019 ~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~V-lVIaTTN 1097 (1183)
++....... +. ....+.||||||++.+... ......+..+++.+.. ...+ +|++++.
T Consensus 90 ~~~~~~~~~--------~~--~~~~~~vliiDe~~~~~~~---~~~~~~l~~~l~~~~~---------~~~~~ii~~~~~ 147 (242)
T 3bos_A 90 IHASISTAL--------LE--GLEQFDLICIDDVDAVAGH---PLWEEAIFDLYNRVAE---------QKRGSLIVSASA 147 (242)
T ss_dssp GGGGSCGGG--------GT--TGGGSSEEEEETGGGGTTC---HHHHHHHHHHHHHHHH---------HCSCEEEEEESS
T ss_pred HHHHHHHHH--------HH--hccCCCEEEEeccccccCC---HHHHHHHHHHHHHHHH---------cCCCeEEEEcCC
Confidence 765432211 11 1134689999999988311 0112223333332221 1233 4444444
Q ss_pred CCC---CCcHHHHhccC--cEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHH
Q 001031 1098 RPF---DLDEAVVRRLP--RRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCPIR 1171 (1183)
Q Consensus 1098 ~p~---~Ld~aLlrRFd--~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~~Air 1171 (1183)
.+. .+.+.+.+||. .++.++.|+.+++.++++.++...++. ++..++.|+..+.| ..+++.++++.|+..+..
T Consensus 148 ~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~ 226 (242)
T 3bos_A 148 SPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMV 226 (242)
T ss_dssp CTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH
Confidence 443 45689999985 789999999999999999998765543 55667888888866 778999999988877743
No 65
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.54 E-value=1.6e-14 Score=171.21 Aligned_cols=182 Identities=20% Similarity=0.304 Sum_probs=130.4
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~pfi~I 1015 (1183)
..|++++|.+..++.+.+.+.. ....++||+||||||||++|+++|+.+ +.+|+.+
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r--------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCCCccCcHHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 4688999999999998887652 123589999999999999999999997 7889988
Q ss_pred ecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEe
Q 001031 1016 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1095 (1183)
Q Consensus 1016 ~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaT 1095 (1183)
++. ..+.|..+..++.+|..+....+.||||| . . .. ..+.|+..+ ....+++|++
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~-----~---~~----a~~~L~~~L------~~g~v~vI~a 297 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID----A-----A---ID----ASNILKPSL------ARGELQCIGA 297 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC----C--------------------CCCT------TSSSCEEEEE
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe----C-----c---hh----HHHHHHHhh------cCCCEEEEec
Confidence 887 56677777889999999998889999999 0 0 01 112222222 2357899999
Q ss_pred cCCCC-----CCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhc----cC-CChhhHHHHHHHcCCCc-----HHHHHH
Q 001031 1096 TNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE----EL-ASDVDLEGIANMADGYS-----GSDLKN 1160 (1183)
Q Consensus 1096 TN~p~-----~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~----~l-~~didl~~LA~~TeGyS-----g~DL~~ 1160 (1183)
||... .+++++++||. ++.|+.|+.+++.+|++.++... .+ ..+..+..++..+.+|. +.....
T Consensus 298 t~~~e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ 376 (468)
T 3pxg_A 298 TTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAID 376 (468)
T ss_dssp CCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHH
T ss_pred CCHHHHHHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHH
Confidence 99876 68999999995 69999999999999999887662 22 24556777777766554 346667
Q ss_pred HHHHHHH
Q 001031 1161 LCVTAAH 1167 (1183)
Q Consensus 1161 L~~~Aa~ 1167 (1183)
+++.|+.
T Consensus 377 ll~~a~~ 383 (468)
T 3pxg_A 377 LIDEAGS 383 (468)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777665
No 66
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.54 E-value=8.7e-15 Score=161.88 Aligned_cols=99 Identities=12% Similarity=0.047 Sum_probs=74.9
Q ss_pred HHHH--HHHHHHhhhhhhhhhccchhHHHHHh-hhCCC-CcccchhhhcccC--CCCHHHHHHHHhhhhhhHhhhccCCC
Q 001031 814 ALLS--DWKQQLERDVETLKGQSNIISIRSVL-SRNGL-DCVDLESLCIKDQ--TLTTEGVEKIVGWALSHHFMHCSEAP 887 (1183)
Q Consensus 814 ALlR--Rferq~e~~Lpd~~gR~~Il~IHT~l-~~~~l-~~vdL~~LA~~tk--gfsgAdIe~Lv~~A~s~al~r~~~~i 887 (1183)
|++| ||++++++++|+...|.+|+++|+.- ....+ .+++++.||..+. ||+|+||+.+|++|+..++.+.....
T Consensus 162 al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~ 241 (274)
T 2x8a_A 162 AILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQ 241 (274)
T ss_dssp HHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9998 99999999999999999999999753 22233 6889999999865 99999999999999999998754321
Q ss_pred CCCCcceecccchhhhHHHHHhhhhhhhh
Q 001031 888 GKDAKLKISTESIMYGLNILQGIQSESKS 916 (1183)
Q Consensus 888 ~~~~kl~Id~~sIkv~~~dF~~al~eikp 916 (1183)
.. ......+.+...||+.++..++|
T Consensus 242 ~~----~~~~~~~~i~~~df~~al~~~~p 266 (274)
T 2x8a_A 242 KS----GNEKGELKVSHKHFEEAFKKVRS 266 (274)
T ss_dssp ------------CCBCHHHHHHHHTTCCC
T ss_pred cc----cccccCCeecHHHHHHHHHHhcC
Confidence 11 11223446788899988877765
No 67
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.54 E-value=1.8e-13 Score=154.44 Aligned_cols=204 Identities=19% Similarity=0.178 Sum_probs=140.0
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEec
Q 001031 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISM 1017 (1183)
Q Consensus 947 tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---------g~pfi~I~~ 1017 (1183)
.+++++|.+...+.+...+...+. ...+.+++|+||||||||++++++++.+ +.+++.+++
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~----------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR----------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS----------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 346899999999999887643211 1234689999999999999999999988 888999998
Q ss_pred Ccccccc----------------ccc-hHHHHHHHHHHHhcc-CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhh
Q 001031 1018 SSITSKW----------------FGE-GEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1079 (1183)
Q Consensus 1018 s~L~s~~----------------~Ge-sE~~Ir~lF~~A~k~-~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~L 1079 (1183)
....... .+. ....+..++...... .+.||||||+|.+...+ . ...++..++..+
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---~----~~~~l~~l~~~~ 159 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---G----GQDLLYRITRIN 159 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---T----HHHHHHHHHHGG
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---C----CChHHHhHhhch
Confidence 7532211 111 223344555544433 47899999999884221 0 123444444444
Q ss_pred cCCcccCCCCEEEEEecCCC---CCCcHHHHhccCc-EEEecCCCHHHHHHHHHHHHhh--c-cCCChhhHHHHHHHcC-
Q 001031 1080 DGLRTKDKERVLVLAATNRP---FDLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAK--E-ELASDVDLEGIANMAD- 1151 (1183)
Q Consensus 1080 dgl~~k~~~~VlVIaTTN~p---~~Ld~aLlrRFd~-vI~I~lPd~eeR~eILk~iL~k--~-~l~~didl~~LA~~Te- 1151 (1183)
..... ..++.+|++||.+ +.+++.+.+||.. .+.++.|+.+++.+|++..+.. . ...++..+..++..+.
T Consensus 160 ~~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (387)
T 2v1u_A 160 QELGD--RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAR 237 (387)
T ss_dssp GCC-------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHS
T ss_pred hhcCC--CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH
Confidence 33210 3578899999877 7889999999975 8999999999999999998864 1 1224445778888877
Q ss_pred --CCcHHHHHHHHHHHHHHhH
Q 001031 1152 --GYSGSDLKNLCVTAAHCPI 1170 (1183)
Q Consensus 1152 --GySg~DL~~L~~~Aa~~Ai 1170 (1183)
| .++.+.++|..|+..+.
T Consensus 238 ~~G-~~r~~~~~l~~a~~~a~ 257 (387)
T 2v1u_A 238 EHG-DARRALDLLRVAGEIAE 257 (387)
T ss_dssp SSC-CHHHHHHHHHHHHHHHH
T ss_pred hcc-CHHHHHHHHHHHHHHHH
Confidence 6 45677788888876554
No 68
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.53 E-value=4.2e-14 Score=176.35 Aligned_cols=199 Identities=20% Similarity=0.291 Sum_probs=145.5
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~pfi~I 1015 (1183)
..|++++|.+..++.+.+.+.. +...++||+||||||||++|+++|+.+ +..++.+
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~--------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred CCCCCccCCHHHHHHHHHHHhc--------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 4688999999999888876641 234689999999999999999999987 6678888
Q ss_pred ecCccc--cccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEE
Q 001031 1016 SMSSIT--SKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1183)
Q Consensus 1016 ~~s~L~--s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVI 1093 (1183)
++..+. ..+.|..+..++.+|..+....++||||||+|.+++.......... ..+.+ ..+. ....+.+|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~---~~~~L----~~~l--~~~~~~~I 319 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD---AANLI----KPLL--SSGKIRVI 319 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHH---HHHHH----SSCS--SSCCCEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHH---HHHHH----HHHH--hCCCeEEE
Confidence 877765 3567888999999999998888999999999999865543221111 11222 2221 22568888
Q ss_pred EecCCC-----CCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhh----ccC-CChhhHHHHHHHcCC-----CcHHHH
Q 001031 1094 AATNRP-----FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK----EEL-ASDVDLEGIANMADG-----YSGSDL 1158 (1183)
Q Consensus 1094 aTTN~p-----~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k----~~l-~~didl~~LA~~TeG-----ySg~DL 1158 (1183)
++|+.+ ..+++++.+||. .+.|+.|+.++|.+|++.++.. ..+ ..+..+..++..+.| +.+..+
T Consensus 320 ~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~ 398 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHH
T ss_pred EEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHH
Confidence 888753 457889999996 7999999999999999988764 222 245556777766554 455677
Q ss_pred HHHHHHHHHH
Q 001031 1159 KNLCVTAAHC 1168 (1183)
Q Consensus 1159 ~~L~~~Aa~~ 1168 (1183)
..++++|+..
T Consensus 399 i~lld~a~~~ 408 (758)
T 1r6b_X 399 IDVIDEAGAR 408 (758)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877644
No 69
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.52 E-value=4e-14 Score=158.87 Aligned_cols=161 Identities=20% Similarity=0.202 Sum_probs=107.9
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc------cc
Q 001031 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS------IT 1021 (1183)
Q Consensus 948 fdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~------L~ 1021 (1183)
++++.|++.+++.+...+.. ..++||+||||||||+||+++|+.++.+++.+++.. +.
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~----------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT----------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH----------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred ccceeCcHHHHHHHHHHHHc----------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 34788999999888776541 147999999999999999999999999999988742 11
Q ss_pred cccccchHHHHHHHHHHHhccC---CeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCC
Q 001031 1022 SKWFGEGEKYVKAVFSLASKIA---PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1183)
Q Consensus 1022 s~~~GesE~~Ir~lF~~A~k~~---PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~ 1098 (1183)
+....... ...| ..... .+||||||||.+ ++..+..+...+++....+.+.....+.+++||+|+|+
T Consensus 90 g~~~~~~~---~~~~--~~~~g~l~~~vl~iDEi~~~-----~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 90 GTMIYNQH---KGNF--EVKKGPVFSNFILADEVNRS-----PAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp EEEEEETT---TTEE--EEEECTTCSSEEEEETGGGS-----CHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECT
T ss_pred CceeecCC---CCce--EeccCcccccEEEEEccccC-----CHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCC
Confidence 11110000 0000 00112 279999999987 22223333333332222222322223457889999986
Q ss_pred CC-----CCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhh
Q 001031 1099 PF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK 1134 (1183)
Q Consensus 1099 p~-----~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k 1134 (1183)
.+ .+++++++||...+.++.|+.+++.+|++..+..
T Consensus 160 ~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 160 VEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp TCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 53 3899999999888999999999999999988754
No 70
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.52 E-value=1.1e-14 Score=173.68 Aligned_cols=186 Identities=17% Similarity=0.268 Sum_probs=114.9
Q ss_pred HHHHHHHHhhccCCCCEEEEEcChhhhhcCC----h----hhHHHHHHHHhcC--CCCEEEEEeccCCCcccccCCCCCc
Q 001031 690 INELFEVALNESKSSPLIVFVKDIEKSLTGN----N----DAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHPGGL 759 (1183)
Q Consensus 690 ~~~l~evl~s~~~~~P~Ilf~~Die~~l~~~----~----~~~~~i~~~L~~L--~g~vivIgs~~~~d~~k~k~~~~~~ 759 (1183)
+..+|+.+.. ..|.||||||||.+..+. . ++.+.|...|+.+ ..+|+||++||
T Consensus 286 ~~~~f~~A~~---~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn-------------- 348 (489)
T 3hu3_A 286 LRKAFEEAEK---NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN-------------- 348 (489)
T ss_dssp HHHHHHHHHH---TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEES--------------
T ss_pred HHHHHHHHHh---cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecC--------------
Confidence 4455555554 679999999999977632 2 3334444455544 45899999999
Q ss_pred eeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhhccchh
Q 001031 760 LFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNII 837 (1183)
Q Consensus 760 ~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~Il 837 (1183)
.|+.+++ +++| ||.+.+++++|+...|.+|+
T Consensus 349 ----------------~~~~Ld~-------------------------------al~r~gRf~~~i~i~~P~~~eR~~IL 381 (489)
T 3hu3_A 349 ----------------RPNSIDP-------------------------------ALRRFGRFDREVDIGIPDATGRLEIL 381 (489)
T ss_dssp ----------------CGGGBCG-------------------------------GGGSTTSSCEEEECCCCCHHHHHHHH
T ss_pred ----------------CccccCH-------------------------------HHhCCCcCceEEEeCCCCHHHHHHHH
Confidence 3344443 6665 77778888888888888999
Q ss_pred HHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCC-cc-eecccchhhhHHHHHhhhhhh
Q 001031 838 SIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDA-KL-KISTESIMYGLNILQGIQSES 914 (1183)
Q Consensus 838 ~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~-kl-~Id~~sIkv~~~dF~~al~ei 914 (1183)
++|.. ..++ .+.++..|+..+.||++++|+.||..|+..++.+..+.+.... .. ......+.+...+|+.++.++
T Consensus 382 ~~~~~--~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~ 459 (489)
T 3hu3_A 382 QIHTK--NMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQS 459 (489)
T ss_dssp HHHTT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSH
T ss_pred HHHHh--cCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhC
Confidence 88844 3333 6778999999999999999999999999999987665432211 11 111234456788998888777
Q ss_pred hhhhhhhhcccChhHHHHHHhcCCCCCCCCCCCcccccCcHHHH
Q 001031 915 KSLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVK 958 (1183)
Q Consensus 915 kp~~~slk~~v~~~E~ek~ll~~iIp~~e~~~tfdDI~Gle~vk 958 (1183)
.|... .+.. ..-+.++|+||||.....
T Consensus 460 ~ps~~--re~~---------------~e~p~v~W~dig~~~~~~ 486 (489)
T 3hu3_A 460 NPSAL--RETV---------------VEVPQVTWEDIGGRSHHH 486 (489)
T ss_dssp HHHHH--HGGG---------------C-----------------
T ss_pred Cchhh--hccc---------------ccCCCCCHHHcCCCcccc
Confidence 65321 1111 122368999999987543
No 71
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.52 E-value=3.6e-13 Score=152.82 Aligned_cols=195 Identities=18% Similarity=0.205 Sum_probs=135.3
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----------CCcEEEEec
Q 001031 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----------GANFINISM 1017 (1183)
Q Consensus 949 dDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-----------g~pfi~I~~ 1017 (1183)
++++|.++..+.+.+.+...+. ...+..++|+||||||||+||+++++.+ +.+++.++|
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~----------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK----------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT----------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCChHHHHHHHHHHHHHHHc----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 5799999999999887753222 1234689999999999999999999988 899999997
Q ss_pred Cccc-cc----------c-------ccc-hHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHh
Q 001031 1018 SSIT-SK----------W-------FGE-GEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1078 (1183)
Q Consensus 1018 s~L~-s~----------~-------~Ge-sE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~ 1078 (1183)
.... .. . .+. ....+..++..+....+ ||||||+|.+..... ... ++..++..
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~----~~~---~l~~l~~~ 161 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG----GDI---VLYQLLRS 161 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT----SHH---HHHHHHTS
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCC----Cce---eHHHHhcC
Confidence 6533 10 0 111 12334555555544444 999999998843211 111 12223221
Q ss_pred hcCCcccCCCCEEEEEecCCC---CCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhh---ccCCChhhHHHHHHHcCC
Q 001031 1079 WDGLRTKDKERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAK---EELASDVDLEGIANMADG 1152 (1183)
Q Consensus 1079 Ldgl~~k~~~~VlVIaTTN~p---~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k---~~l~~didl~~LA~~TeG 1152 (1183)
. .++.||++||.. ..+++.+++||...+.++.++.++..+|++..+.. ....++..+..++..+.+
T Consensus 162 ~--------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~ 233 (384)
T 2qby_B 162 D--------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAK 233 (384)
T ss_dssp S--------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHT
T ss_pred C--------cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHh
Confidence 1 568999999876 67899999999889999999999999999998864 122345567788888762
Q ss_pred --CcHHHHHHHHHHHHHHh
Q 001031 1153 --YSGSDLKNLCVTAAHCP 1169 (1183)
Q Consensus 1153 --ySg~DL~~L~~~Aa~~A 1169 (1183)
-..+.+.++|+.|+..+
T Consensus 234 ~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 234 EHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TCCCHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHh
Confidence 23456667777776544
No 72
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.52 E-value=2.8e-14 Score=144.17 Aligned_cols=150 Identities=21% Similarity=0.398 Sum_probs=107.1
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~pfi~I 1015 (1183)
..|++++|.+...+.+.+.+.. ....++||+||||||||++|+++++.+ +.+++.+
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSR--------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS--------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred cccchhhcchHHHHHHHHHHhC--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 4678899999988888776641 223589999999999999999999987 7888888
Q ss_pred ecCcccc--ccccchHHHHHHHHHHHhcc-CCeEEEEeCCcccccCCC-CcchHHHHHHHHHHHHHhhcCCcccCCCCEE
Q 001031 1016 SMSSITS--KWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRE-NPGEHEAMRKMKNEFMVNWDGLRTKDKERVL 1091 (1183)
Q Consensus 1016 ~~s~L~s--~~~GesE~~Ir~lF~~A~k~-~PsILfIDEID~Ll~~r~-~~~~~e~l~~il~~LL~~Ldgl~~k~~~~Vl 1091 (1183)
++..+.. .+.+.....+..++..+... .+.||||||+|.+.+.+. ........ ..+..+ ++ ...++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~-~~l~~~---~~------~~~~~ 154 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAG-NILKPM---LA------RGELR 154 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTH-HHHHHH---HH------TTCSC
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHH-HHHHHH---Hh------cCCee
Confidence 8776542 23455566777888777665 678999999999964433 11111111 122222 21 14578
Q ss_pred EEEecCCCC-----CCcHHHHhccCcEEEecCCC
Q 001031 1092 VLAATNRPF-----DLDEAVVRRLPRRLMVNLPD 1120 (1183)
Q Consensus 1092 VIaTTN~p~-----~Ld~aLlrRFd~vI~I~lPd 1120 (1183)
+|+++|.+. .+++++++||. .+.++.|+
T Consensus 155 ii~~~~~~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 155 CIGATTVSEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp EEEEECHHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred EEEecCHHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 888888764 68999999996 58888885
No 73
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.51 E-value=6.8e-14 Score=176.99 Aligned_cols=199 Identities=22% Similarity=0.308 Sum_probs=133.0
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~pfi~I 1015 (1183)
..|++++|.++....+.+.+.. +...++||+||||||||++|+++|+.+ +.+++.+
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~--------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHC--------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred CCCcccCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 4688999999888888776641 223579999999999999999999997 8899999
Q ss_pred ecCccc--cccccchHHHHHHHHHHHhcc-CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEE
Q 001031 1016 SMSSIT--SKWFGEGEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLV 1092 (1183)
Q Consensus 1016 ~~s~L~--s~~~GesE~~Ir~lF~~A~k~-~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlV 1092 (1183)
++..+. ..+.|+.+..++.+|..+... .+.||||||+|.+.+.....+..... +.+...+. ...+.+
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~----~~L~~~l~------~~~i~~ 302 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAG----NMLKPALA------RGELRL 302 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-----------------------HHHHH------TTCCCE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHH----HHHHHHHh------CCCeEE
Confidence 998876 456788888999999998875 68999999999997544332222222 22222222 145778
Q ss_pred EEecCCCC----CCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhc----cC-CChhhHHHHHHHcC-----CCcHHHH
Q 001031 1093 LAATNRPF----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE----EL-ASDVDLEGIANMAD-----GYSGSDL 1158 (1183)
Q Consensus 1093 IaTTN~p~----~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~----~l-~~didl~~LA~~Te-----GySg~DL 1158 (1183)
|++||.+. .+++++.+||. .+.|+.|+.+++.+|++.++... .+ ..+..+..++..+. +|.+...
T Consensus 303 I~at~~~~~~~~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~ka 381 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKA 381 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHH
T ss_pred EEecCchHHhhhccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHH
Confidence 88888653 57899999997 49999999999999999887643 22 14445666666543 4667777
Q ss_pred HHHHHHHHHHh
Q 001031 1159 KNLCVTAAHCP 1169 (1183)
Q Consensus 1159 ~~L~~~Aa~~A 1169 (1183)
..++++|+...
T Consensus 382 i~lldea~a~~ 392 (854)
T 1qvr_A 382 IDLIDEAAARL 392 (854)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776544
No 74
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.51 E-value=1e-13 Score=155.59 Aligned_cols=205 Identities=19% Similarity=0.196 Sum_probs=120.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-------c------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------N------ 1011 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-------p------ 1011 (1183)
..+|++++|.+.++..+...+.. ....++||+||||||||++|+++++.++. +
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~--------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVD--------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHC--------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCchhccChHHHHHHHHHHhhC--------------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 46899999999987765443321 11246999999999999999999999863 2
Q ss_pred --------------------EEEEecCccccccccchHHHHHHHHHHHh---------ccCCeEEEEeCCcccccCCCCc
Q 001031 1012 --------------------FINISMSSITSKWFGEGEKYVKAVFSLAS---------KIAPSVVFVDEVDSMLGRRENP 1062 (1183)
Q Consensus 1012 --------------------fi~I~~s~L~s~~~GesE~~Ir~lF~~A~---------k~~PsILfIDEID~Ll~~r~~~ 1062 (1183)
++.+.........+|.. .+...|..+. ...++||||||||.+. .
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~-----~ 158 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLE-----D 158 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC-----H
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCC-----H
Confidence 12111111011111110 0111222221 1136899999999882 2
Q ss_pred chHHHHHHHHHHHHHhh--cCCcccCCCCEEEEEecCCCC-CCcHHHHhccCcEEEecCC-CHHHHHHHHHHHHhh----
Q 001031 1063 GEHEAMRKMKNEFMVNW--DGLRTKDKERVLVLAATNRPF-DLDEAVVRRLPRRLMVNLP-DAPNREKIIRVILAK---- 1134 (1183)
Q Consensus 1063 ~~~e~l~~il~~LL~~L--dgl~~k~~~~VlVIaTTN~p~-~Ld~aLlrRFd~vI~I~lP-d~eeR~eILk~iL~k---- 1134 (1183)
..+..+..+++.-...+ .+.....+.++++|+|+|... .+++++++||+..+.++.| +.+++.+|++..+..
T Consensus 159 ~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~ 238 (350)
T 1g8p_A 159 HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADP 238 (350)
T ss_dssp HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCc
Confidence 22222222222100001 111111124799999999754 8999999999888999998 677777888663210
Q ss_pred -------------------------cc-CCChhhHHHHHHHcCC---CcHHHHHHHHHHHHHHhH
Q 001031 1135 -------------------------EE-LASDVDLEGIANMADG---YSGSDLKNLCVTAAHCPI 1170 (1183)
Q Consensus 1135 -------------------------~~-l~~didl~~LA~~TeG---ySg~DL~~L~~~Aa~~Ai 1170 (1183)
.. ..++..+..|+....+ .+.+.+.++++.|...|.
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~ 303 (350)
T 1g8p_A 239 KAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAA 303 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHH
T ss_pred hhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 01 2244455666665543 256888898888876664
No 75
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=1.3e-13 Score=165.11 Aligned_cols=204 Identities=19% Similarity=0.215 Sum_probs=129.7
Q ss_pred CCcccccCcHHHHHHHHHHHHcccC-ChhhhhcCCCC--CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcccc
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQ-RPELFCKGQLT--KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITS 1022 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~-~~elf~k~~l~--kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s 1022 (1183)
.+|++++|.+..++.|.+++..... .+..|.+.+.. .+++++||+||||||||++|+++|++++++++.++++++..
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~ 115 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRS 115 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCC
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcch
Confidence 5799999999999999998864221 11222222211 24578999999999999999999999999999999987654
Q ss_pred ccccchH-------HHHHHHHHHH-----hccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCE
Q 001031 1023 KWFGEGE-------KYVKAVFSLA-----SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1090 (1183)
Q Consensus 1023 ~~~GesE-------~~Ir~lF~~A-----~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~V 1090 (1183)
....... ..+..+|..+ ....+.||||||+|.+.... +.. ++.++..++. ...++
T Consensus 116 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-----~~~----l~~L~~~l~~----~~~~i 182 (516)
T 1sxj_A 116 KTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-----RGG----VGQLAQFCRK----TSTPL 182 (516)
T ss_dssp HHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-----TTH----HHHHHHHHHH----CSSCE
T ss_pred HHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-----HHH----HHHHHHHHHh----cCCCE
Confidence 3211100 0022233332 23467899999999985322 111 1222222221 12446
Q ss_pred EEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHH
Q 001031 1091 LVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTA 1165 (1183)
Q Consensus 1091 lVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~A 1165 (1183)
++|+++.....+. .+.+| ...+.|+.|+.+++.+++..++.+.++. ++..+..|+..+.|-- +.+.++++.+
T Consensus 183 Ili~~~~~~~~l~-~l~~r-~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~Gdi-R~~i~~L~~~ 255 (516)
T 1sxj_A 183 ILICNERNLPKMR-PFDRV-CLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDI-RQVINLLSTI 255 (516)
T ss_dssp EEEESCTTSSTTG-GGTTT-SEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCH-HHHHHHHTHH
T ss_pred EEEEcCCCCccch-hhHhc-eEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcH-HHHHHHHHHH
Confidence 6666554444454 34444 4789999999999999999888765442 4455888999887643 3444444433
No 76
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.49 E-value=2.2e-13 Score=150.26 Aligned_cols=257 Identities=16% Similarity=0.197 Sum_probs=174.2
Q ss_pred HHHhhcccCCCccccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHh
Q 001031 437 DSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAK 516 (1183)
Q Consensus 437 ~~l~~~i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~ 516 (1183)
+.+.+.+++ +.-.++|+++--+ +..+..|..+...++++++. |. .+....+.|||.||+| ....+||||||+
T Consensus 5 ~~~~~~~~~-~~~~~~~~~i~G~--~~~~~~l~~~i~~~~~~~~~--~~-~~~~~~~~vll~Gp~G--tGKT~la~~la~ 76 (297)
T 3b9p_A 5 QLILDEIVE-GGAKVEWTDIAGQ--DVAKQALQEMVILPSVRPEL--FT-GLRAPAKGLLLFGPPG--NGKTLLARAVAT 76 (297)
T ss_dssp HHHHTTTBC-CSSCCCGGGSCCC--HHHHHHHHHHTHHHHHCGGG--SC-GGGCCCSEEEEESSSS--SCHHHHHHHHHH
T ss_pred HHHHHHhcc-CCCCCCHHHhCCh--HHHHHHHHHHHHhhhhCHHH--Hh-cCCCCCCeEEEECcCC--CCHHHHHHHHHH
Confidence 344455554 3467899998776 89999999988878877765 22 3445578999999999 789999999999
Q ss_pred hcCCeEEEEecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccc
Q 001031 517 HFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKN 596 (1183)
Q Consensus 517 ~f~a~LLilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 596 (1183)
+++.+++-++...+.+...
T Consensus 77 ~~~~~~~~i~~~~l~~~~~------------------------------------------------------------- 95 (297)
T 3b9p_A 77 ECSATFLNISAASLTSKYV------------------------------------------------------------- 95 (297)
T ss_dssp HTTCEEEEEESTTTSSSSC-------------------------------------------------------------
T ss_pred HhCCCeEEeeHHHHhhccc-------------------------------------------------------------
Confidence 9887776655422211100
Q ss_pred cccccCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCccccccccc
Q 001031 597 YTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLR 676 (1183)
Q Consensus 597 ~~~~~gdrvk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~ 676 (1183)
|
T Consensus 96 ------------~------------------------------------------------------------------- 96 (297)
T 3b9p_A 96 ------------G------------------------------------------------------------------- 96 (297)
T ss_dssp ------------S-------------------------------------------------------------------
T ss_pred ------------c-------------------------------------------------------------------
Confidence 0
Q ss_pred ccCCCcchhHHHHHHHHHHHHhhccCCCCEEEEEcChhhhhcCC--------hhhHHHHHHHHhcCC-----CCEEEEEe
Q 001031 677 LDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENLP-----SNVVVIGS 743 (1183)
Q Consensus 677 ~d~~~~~~~~k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~~--------~~~~~~i~~~L~~L~-----g~vivIgs 743 (1183)
...-.+..+|+.+.. .+|.||||||+|.++... .+....+...++.++ ++|+|||+
T Consensus 97 --------~~~~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~ 165 (297)
T 3b9p_A 97 --------DGEKLVRALFAVARH---MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAA 165 (297)
T ss_dssp --------CHHHHHHHHHHHHHH---TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEE
T ss_pred --------hHHHHHHHHHHHHHH---cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEee
Confidence 001124555666555 689999999999976532 334444555666664 46999999
Q ss_pred ccCCCcccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHHHHHHHH
Q 001031 744 HTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQL 823 (1183)
Q Consensus 744 ~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~ 823 (1183)
+| .|+.+++ +++|||...+
T Consensus 166 tn------------------------------~~~~l~~-------------------------------~l~~R~~~~i 184 (297)
T 3b9p_A 166 TN------------------------------RPQELDE-------------------------------AALRRFTKRV 184 (297)
T ss_dssp ES------------------------------CGGGBCH-------------------------------HHHHHCCEEE
T ss_pred cC------------------------------ChhhCCH-------------------------------HHHhhCCeEE
Confidence 99 3344444 7777887778
Q ss_pred hhhhhhhhhccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhh
Q 001031 824 ERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYG 903 (1183)
Q Consensus 824 e~~Lpd~~gR~~Il~IHT~l~~~~l~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~ 903 (1183)
++++|+...|..|++.+.......+++.+++.|+..+.||++++|+.+|..|...++.+....... .........+.
T Consensus 185 ~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~---~~~~~~~~~i~ 261 (297)
T 3b9p_A 185 YVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVK---CLDISAMRAIT 261 (297)
T ss_dssp ECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-----------CCCCCCCC
T ss_pred EeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcc---cccccccCCcC
Confidence 888888888888887765433344678889999999999999999999999999988765322111 11111222456
Q ss_pred HHHHHhhhhhhhh
Q 001031 904 LNILQGIQSESKS 916 (1183)
Q Consensus 904 ~~dF~~al~eikp 916 (1183)
..||..++..+++
T Consensus 262 ~~d~~~a~~~~~~ 274 (297)
T 3b9p_A 262 EQDFHSSLKRIRR 274 (297)
T ss_dssp HHHHHHHTTSCCC
T ss_pred HHHHHHHHHHcCC
Confidence 7788777665544
No 77
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.48 E-value=9.1e-13 Score=149.07 Aligned_cols=201 Identities=10% Similarity=0.093 Sum_probs=137.8
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEEecCcc
Q 001031 951 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINISMSSI 1020 (1183)
Q Consensus 951 I~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~pfi~I~~s~L 1020 (1183)
+.+.++..+.|...+...+. ...+.+++|+||||||||++++++++++ ++.++.++|..+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~----------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~ 91 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM----------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL 91 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred cCCHHHHHHHHHHHHHHHhc----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
Confidence 44556666666655543221 2245789999999999999999999998 467889998764
Q ss_pred ccc----------c------ccchHHHHHHHHHHH--hccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCC
Q 001031 1021 TSK----------W------FGEGEKYVKAVFSLA--SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1082 (1183)
Q Consensus 1021 ~s~----------~------~GesE~~Ir~lF~~A--~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl 1082 (1183)
.+. . .+.....+..+|... ....+.||||||||.|. .+..+. .++...
T Consensus 92 ~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-------~q~~L~----~l~~~~--- 157 (318)
T 3te6_A 92 AGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-------SEKILQ----YFEKWI--- 157 (318)
T ss_dssp C--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-------CTHHHH----HHHHHH---
T ss_pred CCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-------cchHHH----HHHhcc---
Confidence 332 1 233456778888875 45567899999999995 223332 233221
Q ss_pred cccCCCCEEEEEecCCCCCCc----HHHHhccC-cEEEecCCCHHHHHHHHHHHHhhcc---------------------
Q 001031 1083 RTKDKERVLVLAATNRPFDLD----EAVVRRLP-RRLMVNLPDAPNREKIIRVILAKEE--------------------- 1136 (1183)
Q Consensus 1083 ~~k~~~~VlVIaTTN~p~~Ld----~aLlrRFd-~vI~I~lPd~eeR~eILk~iL~k~~--------------------- 1136 (1183)
.....++.||+++|..+..+ +++.+||. .++.|+.++.++..+|++..+....
T Consensus 158 -~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~ 236 (318)
T 3te6_A 158 -SSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIRE 236 (318)
T ss_dssp -HCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--
T ss_pred -cccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccc
Confidence 11346799999999876544 34567886 6899999999999999999887631
Q ss_pred ---------------CCChhhHHHHHHH---cCCCcHHHHHHHHHHHHHHhHHHHHhhh
Q 001031 1137 ---------------LASDVDLEGIANM---ADGYSGSDLKNLCVTAAHCPIREILEKE 1177 (1183)
Q Consensus 1137 ---------------l~~didl~~LA~~---TeGySg~DL~~L~~~Aa~~Aire~le~e 1177 (1183)
...+..++.+|+. ..|- .+.--++|+.|+..+-++.+++.
T Consensus 237 ~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD-~R~Al~ilr~A~~~ae~e~~~k~ 294 (318)
T 3te6_A 237 GQNQKIPDNVIVINHKINNKITQLIAKNVANVSGS-TEKAFKICEAAVEISKKDFVRKG 294 (318)
T ss_dssp ------CTTEEEECEECCHHHHHHHHHHHHHHHCS-HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccCHHHHHHHHHHHHhhCCh-HHHHHHHHHHHHHHHHHHHHhcc
Confidence 1244557777774 3343 34555788999999888877653
No 78
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.48 E-value=8.1e-15 Score=163.54 Aligned_cols=216 Identities=19% Similarity=0.280 Sum_probs=155.0
Q ss_pred ccccccccccccchhhHHHHHHhhhhhhccccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001031 448 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1183)
Q Consensus 448 ~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilD 526 (1183)
.-.++|+++--+ +..|..|.++.-..+++++.- +++ + ...+.|||.||+| ....+||||||+..+.+++.++
T Consensus 9 ~~~~~~~di~G~--~~~~~~l~~~v~~~~~~~~~~~~~~--~-~~~~~vLL~Gp~G--tGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 9 VPQVTWEDIGGL--EDVKRELQELVQYPVEHPDKFLKFG--M-TPSKGVLFYGPPG--CGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCCCGGGSCSC--HHHHHHHHHHHHHHHHCHHHHHHHC--C-CCCSEEEEECSSS--SSHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCCCHHHhCCH--HHHHHHHHHHHHHHhhCHHHHHHcC--C-CCCceEEEECCCC--cCHHHHHHHHHHHhCCCEEEEE
Confidence 456899997766 899999999888788887652 332 2 3456799999999 7899999999999998887765
Q ss_pred cCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCcee
Q 001031 527 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 606 (1183)
Q Consensus 527 s~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk 606 (1183)
...+.. +
T Consensus 82 ~~~l~~-------------------------------------------------------------------------~ 88 (301)
T 3cf0_A 82 GPELLT-------------------------------------------------------------------------M 88 (301)
T ss_dssp HHHHHH-------------------------------------------------------------------------H
T ss_pred hHHHHh-------------------------------------------------------------------------h
Confidence 321100 0
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhH
Q 001031 607 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 686 (1183)
Q Consensus 607 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 686 (1183)
|+|..
T Consensus 89 ~~g~~--------------------------------------------------------------------------- 93 (301)
T 3cf0_A 89 WFGES--------------------------------------------------------------------------- 93 (301)
T ss_dssp HHTTC---------------------------------------------------------------------------
T ss_pred hcCch---------------------------------------------------------------------------
Confidence 01100
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEEcChhhhhcC-----------ChhhHHHHHHHHhcC--CCCEEEEEeccCCCccccc
Q 001031 687 KLAINELFEVALNESKSSPLIVFVKDIEKSLTG-----------NNDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEK 753 (1183)
Q Consensus 687 k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~-----------~~~~~~~i~~~L~~L--~g~vivIgs~~~~d~~k~k 753 (1183)
...+..+|+.+.. ..|.||||+|+|.+... ..+....+-..|+.+ ..+|+|||+||
T Consensus 94 ~~~~~~~f~~a~~---~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn-------- 162 (301)
T 3cf0_A 94 EANVREIFDKARQ---AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN-------- 162 (301)
T ss_dssp TTHHHHHHHHHHH---TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEES--------
T ss_pred HHHHHHHHHHHHh---cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecC--------
Confidence 0014455665554 67999999999997642 123445566666665 34899999999
Q ss_pred CCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhh
Q 001031 754 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLK 831 (1183)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~ 831 (1183)
.|+.+|+ +++| ||++.+++++|+..
T Consensus 163 ----------------------~~~~ld~-------------------------------al~r~gRf~~~i~i~~p~~~ 189 (301)
T 3cf0_A 163 ----------------------RPDIIDP-------------------------------AILRPGRLDQLIYIPLPDEK 189 (301)
T ss_dssp ----------------------CGGGSCG-------------------------------GGGSTTSSCEEEECCCCCHH
T ss_pred ----------------------CccccCh-------------------------------HHhcCCccceEEecCCcCHH
Confidence 4444554 6666 77777788888888
Q ss_pred hccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhcc
Q 001031 832 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCS 884 (1183)
Q Consensus 832 gR~~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~ 884 (1183)
.|.+|++.+.. ..++ .+++++.|+..+.||+|+||+.+|..|...++.+..
T Consensus 190 ~r~~il~~~l~--~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~ 241 (301)
T 3cf0_A 190 SRVAILKANLR--KSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 241 (301)
T ss_dssp HHHHHHHHHHT--TSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--cCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888877643 3333 577899999999999999999999999999987653
No 79
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.48 E-value=1.4e-13 Score=171.96 Aligned_cols=184 Identities=19% Similarity=0.284 Sum_probs=131.7
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh----------CCcEEEE
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA----------GANFINI 1015 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL----------g~pfi~I 1015 (1183)
..|++++|.++.++.+.+.+.. ....++||+||||||||++|+++|+.+ +.+++.+
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~--------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred CCCCCccCchHHHHHHHHHHhC--------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 4678999999999999887652 223579999999999999999999997 7888888
Q ss_pred ecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEe
Q 001031 1016 SMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1095 (1183)
Q Consensus 1016 ~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaT 1095 (1183)
++ ...+.|+.+..++.+|..+....++||||| . . . ...+.++..+ ....+.+|++
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~-------~---~----~~~~~L~~~l------~~~~v~~I~a 297 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID--A-------A---I----DASNILKPSL------ARGELQCIGA 297 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C----------------------CCCT------TSSSCEEEEE
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc--C-------c---h----hHHHHHHHHH------hcCCEEEEeC
Confidence 87 445678888899999999999899999999 1 0 0 1112222222 2367899999
Q ss_pred cCCCC-----CCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhc----cC-CChhhHHHHHHHcC-----CCcHHHHHH
Q 001031 1096 TNRPF-----DLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKE----EL-ASDVDLEGIANMAD-----GYSGSDLKN 1160 (1183)
Q Consensus 1096 TN~p~-----~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~----~l-~~didl~~LA~~Te-----GySg~DL~~ 1160 (1183)
||... .+++++++|| ..+.|+.|+.+++.+|++.++... .+ ..+..+..++..+. ++.+.+...
T Consensus 298 t~~~~~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ 376 (758)
T 3pxi_A 298 TTLDEYRKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAID 376 (758)
T ss_dssp CCTTTTHHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHH
T ss_pred CChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHH
Confidence 99887 7999999999 679999999999999999887652 22 24445666666544 456677777
Q ss_pred HHHHHHHHh
Q 001031 1161 LCVTAAHCP 1169 (1183)
Q Consensus 1161 L~~~Aa~~A 1169 (1183)
++..|+..+
T Consensus 377 ll~~a~~~~ 385 (758)
T 3pxi_A 377 LIDEAGSKV 385 (758)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776543
No 80
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.48 E-value=1.2e-12 Score=147.90 Aligned_cols=185 Identities=24% Similarity=0.271 Sum_probs=134.0
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc--------------
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN-------------- 1011 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p-------------- 1011 (1183)
.+|++++|.+..++.|...+.. .+.++.+||+||+|+|||++|+++++.+++.
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~-------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 79 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSL-------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHH-------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHH
T ss_pred CchhhccCcHHHHHHHHHHHHh-------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 4688999999999999887752 1233579999999999999999999998542
Q ss_pred ----------EEEEecCccccccccchHHHHHHHHHHHhc----cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHH
Q 001031 1012 ----------FINISMSSITSKWFGEGEKYVKAVFSLASK----IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1183)
Q Consensus 1012 ----------fi~I~~s~L~s~~~GesE~~Ir~lF~~A~k----~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~ 1077 (1183)
++.++...- .....++.++..+.. ..+.||||||+|.+. ....+.|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~------------~~~~~~Ll~ 141 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------RHSFNALLK 141 (373)
T ss_dssp HHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC------------HHHHHHHHH
T ss_pred HHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhc------------HHHHHHHHH
Confidence 233332210 111235556655542 346899999999872 112334444
Q ss_pred hhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHH
Q 001031 1078 NWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGS 1156 (1183)
Q Consensus 1078 ~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~ 1156 (1183)
.++. .+..+++|++|+.+..+.+.+++|+ .++.++.|+.++..++++.++...++. ++..+..|+..+.| ..+
T Consensus 142 ~le~----~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r 215 (373)
T 1jr3_A 142 TLEE----PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLR 215 (373)
T ss_dssp HHHS----CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHH
T ss_pred HHhc----CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHH
Confidence 4443 2356888888888889999999998 789999999999999999998776544 45557889999877 567
Q ss_pred HHHHHHHHHHH
Q 001031 1157 DLKNLCVTAAH 1167 (1183)
Q Consensus 1157 DL~~L~~~Aa~ 1167 (1183)
++.++++.+..
T Consensus 216 ~~~~~l~~~~~ 226 (373)
T 1jr3_A 216 DALSLTDQAIA 226 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888877654
No 81
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.46 E-value=7.5e-13 Score=145.97 Aligned_cols=189 Identities=22% Similarity=0.221 Sum_probs=132.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSS 1019 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-----g~pfi~I~~s~ 1019 (1183)
..+|++++|++.+++.+.+.+.. ... .++||+||||+|||++|+++++.+ +.+++.+++++
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 78 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVER-------------KNI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTT-------------TCC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS
T ss_pred CCCHHHHhCCHHHHHHHHHHHhC-------------CCC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc
Confidence 46799999999999988776531 122 249999999999999999999987 45688888876
Q ss_pred cccccccchHHHHHHHHHHH-h-ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecC
Q 001031 1020 ITSKWFGEGEKYVKAVFSLA-S-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1097 (1183)
Q Consensus 1020 L~s~~~GesE~~Ir~lF~~A-~-k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN 1097 (1183)
..+ .......+..+.... . ...+.||||||+|.+. ....+.|+..++. .+..+++|++||
T Consensus 79 ~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~------------~~~~~~L~~~le~----~~~~~~~i~~~~ 140 (319)
T 2chq_A 79 ERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT------------ADAQAALRRTMEM----YSKSCRFILSCN 140 (319)
T ss_dssp TTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC------------HHHHHTTGGGTSS----SSSSEEEEEEES
T ss_pred ccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC------------HHHHHHHHHHHHh----cCCCCeEEEEeC
Confidence 432 111122222222111 1 1347899999999882 1123334444433 235788999999
Q ss_pred CCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001031 1098 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1167 (1183)
Q Consensus 1098 ~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~ 1167 (1183)
.+..+.+++.+|+ ..+.++.|+.+++.+++..++.+.++. ++..+..|+..+.|. .+.+.++++.++.
T Consensus 141 ~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r~~~~~l~~~~~ 209 (319)
T 2chq_A 141 YVSRIIEPIQSRC-AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGD-FRKAINALQGAAA 209 (319)
T ss_dssp CGGGSCHHHHTTC-EEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTC-HHHHHHHHHHHHH
T ss_pred ChhhcchHHHhhC-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHHH
Confidence 9999999999999 589999999999999999998876553 555678888777664 4455555555543
No 82
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=1.3e-12 Score=144.20 Aligned_cols=183 Identities=19% Similarity=0.173 Sum_probs=130.7
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCcc
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSI 1020 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL-----g~pfi~I~~s~L 1020 (1183)
.+|++++|++..++.|.+.+.. .+.+ ++||+||+|+|||++|+++++.+ +.+++.+++.+.
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKD-------------GNMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 83 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHS-------------CCCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC
T ss_pred CCHHHHHCCHHHHHHHHHHHHc-------------CCCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc
Confidence 5788999999999999887752 1222 49999999999999999999986 456788887653
Q ss_pred ccccccchHHHHHHHHHHHh-------ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEE
Q 001031 1021 TSKWFGEGEKYVKAVFSLAS-------KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1183)
Q Consensus 1021 ~s~~~GesE~~Ir~lF~~A~-------k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVI 1093 (1183)
.+ ...++.++.... ...+.||||||+|.+. .. ..+.|+..++. ....+.+|
T Consensus 84 ~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~-----~~-------~~~~L~~~le~----~~~~~~~i 141 (323)
T 1sxj_B 84 RG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT-----AG-------AQQALRRTMEL----YSNSTRFA 141 (323)
T ss_dssp CS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC-----HH-------HHHTTHHHHHH----TTTTEEEE
T ss_pred cC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCC-----HH-------HHHHHHHHHhc----cCCCceEE
Confidence 21 233444444333 2247899999999882 11 12223333322 22567888
Q ss_pred EecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHH
Q 001031 1094 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAA 1166 (1183)
Q Consensus 1094 aTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa 1166 (1183)
++||.+..+.+++.+|+ ..+.++.|+.++..++++.++...++. ++..+..|+..+.|... .+.++++.++
T Consensus 142 l~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r-~a~~~l~~~~ 213 (323)
T 1sxj_B 142 FACNQSNKIIEPLQSQC-AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMR-QAINNLQSTV 213 (323)
T ss_dssp EEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHH-HHHHHHHHHH
T ss_pred EEeCChhhchhHHHhhc-eEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHHHHH
Confidence 88899999999999998 589999999999999999988765543 45667889998877554 4444444444
No 83
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=8.5e-13 Score=148.04 Aligned_cols=187 Identities=19% Similarity=0.222 Sum_probs=129.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC------CcEEEEecC
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG------ANFINISMS 1018 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg------~pfi~I~~s 1018 (1183)
..+|++++|.+++++.|...+.. ..+ .++||+||||||||++|+++++.++ ..++.++++
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~-------------~~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKS-------------ANL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTC-------------TTC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred CCCHHHhhCCHHHHHHHHHHHhc-------------CCC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 35789999999999998887642 112 3499999999999999999998864 467888876
Q ss_pred ccccccccchHHHHHHHHHHH-h---------------ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCC
Q 001031 1019 SITSKWFGEGEKYVKAVFSLA-S---------------KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1082 (1183)
Q Consensus 1019 ~L~s~~~GesE~~Ir~lF~~A-~---------------k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl 1082 (1183)
+..+ ...++..+... . ...+.||||||+|.+. ...+ +.|+..++..
T Consensus 99 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~-----~~~~-------~~Ll~~le~~ 160 (353)
T 1sxj_D 99 DERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT-----ADAQ-------SALRRTMETY 160 (353)
T ss_dssp SCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC-----HHHH-------HHHHHHHHHT
T ss_pred cccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC-----HHHH-------HHHHHHHHhc
Confidence 6421 11122211111 1 1245799999999883 1112 2233333222
Q ss_pred cccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccC-CChhhHHHHHHHcCCCcHHHHHHH
Q 001031 1083 RTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL-ASDVDLEGIANMADGYSGSDLKNL 1161 (1183)
Q Consensus 1083 ~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l-~~didl~~LA~~TeGySg~DL~~L 1161 (1183)
.....+|++||.+..+.+++++|+ ..+.++.|+.++...+++.++...++ .++..+..|+..+.|. .+.+.++
T Consensus 161 ----~~~~~~il~~~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r~~~~~ 234 (353)
T 1sxj_D 161 ----SGVTRFCLICNYVTRIIDPLASQC-SKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD-LRRGITL 234 (353)
T ss_dssp ----TTTEEEEEEESCGGGSCHHHHHHS-EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC-HHHHHHH
T ss_pred ----CCCceEEEEeCchhhCcchhhccC-ceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHHHHH
Confidence 235677778899999999999999 58999999999999999998876554 3566788999999875 4555566
Q ss_pred HHHHHHHh
Q 001031 1162 CVTAAHCP 1169 (1183)
Q Consensus 1162 ~~~Aa~~A 1169 (1183)
++.++..+
T Consensus 235 l~~~~~~~ 242 (353)
T 1sxj_D 235 LQSASKGA 242 (353)
T ss_dssp HHHTHHHH
T ss_pred HHHHHHhc
Confidence 66555443
No 84
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.45 E-value=3e-13 Score=137.39 Aligned_cols=110 Identities=24% Similarity=0.382 Sum_probs=87.8
Q ss_pred CCCCCCccceeccccC-CCCceeee-cceeEEccCCccceeecCCCCCccceEEEEee--cC--CcceEEEEEecCCceE
Q 001031 127 KVGSRIPWARLISQCS-QNSHLSMT-GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIE--NG--GPSGALLEITGGKGEV 200 (1183)
Q Consensus 127 ~~~~~~pW~rL~s~~~-~~p~~~i~-~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~--~~--g~~~a~le~~~~~G~v 200 (1183)
.+....||++|+.... ....+.+. +..|+|||+..||+.|.|+.+|..||+|.... .+ ....++|+|.|+|||
T Consensus 11 ~~~~~~~~~~L~~~~~~~g~~~~l~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~DlS~NGT- 89 (151)
T 2jqj_A 11 PSSEYTCLGHLVNLIPGKEQKVEITNRNVTTIGRSRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGT- 89 (151)
T ss_dssp CSSSCCEEEEEEEEETTEEEEEEEECCSCEEEESSTTSSEECCCTTCCTTSEEEEEEEEEETTEEEEEEEEEECCSSCE-
T ss_pred CCCCCCceEEEEEecCCCceEEEEcCCCeEEeCCCCCCCEEECCCCCccccCEEEEecccCCcCcCCEEEEEECCCCCe-
Confidence 3456679999999875 34477787 48999999999999999999999999999731 01 122488999999999
Q ss_pred EEcCeecCCCceEEeeCCCEEEEccCCCeeEEeeecCccc
Q 001031 201 EVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDT 240 (1183)
Q Consensus 201 ~vNg~~~~k~~~~~L~~gDev~f~~~~~~ayifq~l~~~~ 240 (1183)
+|||+++.++ .+.|++||+|.|+.. ..|+|.-.....
T Consensus 90 ~VNg~~i~~~-~~~L~~GD~I~lG~~--~~~~f~~~~~~~ 126 (151)
T 2jqj_A 90 FINGNRLVKK-DYILKNGDRIVFGKS--CSFLFKYASSSS 126 (151)
T ss_dssp EETTEECCSS-CEEECSSEEEEETTT--EEEEEEECSSCC
T ss_pred EECCEEcCCC-ceECCCCCEEEECCC--cEEEEEEcCCCc
Confidence 7999999999 999999999999873 356666444333
No 85
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.45 E-value=3.8e-13 Score=146.27 Aligned_cols=203 Identities=19% Similarity=0.149 Sum_probs=115.4
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCcccc
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSITS 1022 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg---~pfi~I~~s~L~s 1022 (1183)
.+|++++|.+..+..+.+.+.... ....+|||+||||||||++|++|++.+. .+|+.++|+.+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~------------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~ 70 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA------------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE 70 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT------------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH
T ss_pred cccccceeCCHHHHHHHHHHHHHh------------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh
Confidence 478899999988888877665311 1225799999999999999999999874 7899999987632
Q ss_pred c-----cccchHHH-------HHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCE
Q 001031 1023 K-----WFGEGEKY-------VKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERV 1090 (1183)
Q Consensus 1023 ~-----~~GesE~~-------Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~V 1090 (1183)
. .+|..... ....|..+ ..++|||||||.+- ...+..+.++++.......+.......++
T Consensus 71 ~~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~-----~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~ 142 (265)
T 2bjv_A 71 NLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP-----MMVQEKLLRVIEYGELERVGGSQPLQVNV 142 (265)
T ss_dssp HHHHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSC-----HHHHHHHHHHHHHCEECCCCC--CEECCC
T ss_pred hHHHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcC-----HHHHHHHHHHHHhCCeecCCCcccccCCe
Confidence 2 11211000 01122222 35899999999882 22222222222111000001111112467
Q ss_pred EEEEecCCC-------CCCcHHHHhccCcEEEecCCCHHHH----HHHHHHHHhh----ccC-----CChhhHHHHHHHc
Q 001031 1091 LVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNR----EKIIRVILAK----EEL-----ASDVDLEGIANMA 1150 (1183)
Q Consensus 1091 lVIaTTN~p-------~~Ld~aLlrRFd~vI~I~lPd~eeR----~eILk~iL~k----~~l-----~~didl~~LA~~T 1150 (1183)
.+|+|||.. ..+.+.+.+||. .+.+.+|+..+| ..++++++.. ... .++..+..|....
T Consensus 143 ~iI~atn~~~~~~~~~~~~~~~L~~Rl~-~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~ 221 (265)
T 2bjv_A 143 RLVCATNADLPAMVNEGTFRADLLDALA-FDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYR 221 (265)
T ss_dssp EEEEEESSCHHHHHHHTSSCHHHHHHHC-SEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSC
T ss_pred EEEEecCcCHHHHHHcCCccHHHHHhhc-CcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCC
Confidence 899999874 357889999995 356777776554 3444555433 222 2334455555543
Q ss_pred CCCcHHHHHHHHHHHHHHh
Q 001031 1151 DGYSGSDLKNLCVTAAHCP 1169 (1183)
Q Consensus 1151 eGySg~DL~~L~~~Aa~~A 1169 (1183)
-....++|+++++.++..+
T Consensus 222 ~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 222 WPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp CTTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 2345678999988887643
No 86
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.45 E-value=3.7e-13 Score=132.93 Aligned_cols=100 Identities=25% Similarity=0.286 Sum_probs=88.8
Q ss_pred CccceeccccCCCCceeeecc-------------eeEEccCCccceeecCC-CCCccceEEEEeecCCcceEEEEEecCC
Q 001031 132 IPWARLISQCSQNSHLSMTGA-------------VFTVGHNRQCDLYLKDP-SISKNLCRLRRIENGGPSGALLEITGGK 197 (1183)
Q Consensus 132 ~pW~rL~s~~~~~p~~~i~~~-------------~~t~G~~~~cd~~l~d~-~~s~~~c~l~~~~~~g~~~a~le~~~~~ 197 (1183)
..||||.++..++|++.+... .++|||+..||+.|+|+ .+|..||+|...+ +|. ++|+|.|+|
T Consensus 3 ~~~~~L~~~~~~~p~~~l~~~~~~i~~~~~~~~~~~~IGR~~~~di~l~~~~~vSr~Ha~i~~~~-~g~--~~l~DlS~N 79 (127)
T 1g6g_A 3 NIVCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGE-DGN--LLLNDISTN 79 (127)
T ss_dssp EEEEEEEESSSSSCCEEEEECHHHHHHCCSSCCEEEEEESSTTSSEECCSCTTSCSSCEEEEECT-TSC--EEEEECCSS
T ss_pred ceEEEEEECCCCCCceEeeccccceeeeeecCCCCEEECCCCCCCEEeCCCCCCChhHeEEEECC-CCc--EEEEECCcC
Confidence 479999999999999999877 99999999999999998 5999999999742 344 889999999
Q ss_pred ceEEEcCeecCCCceEEeeCCCEEEEccCC---CeeEEeee
Q 001031 198 GEVEVNGNVHPKDSQVVLRGGDELVFSPSG---KHSYIFQQ 235 (1183)
Q Consensus 198 G~v~vNg~~~~k~~~~~L~~gDev~f~~~~---~~ayifq~ 235 (1183)
|| +|||+++.++..+.|+.||+|.|+... ...|+|+.
T Consensus 80 GT-~vNg~~l~~~~~~~L~~Gd~I~lG~~~~~~~i~f~~~~ 119 (127)
T 1g6g_A 80 GT-WLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFI 119 (127)
T ss_dssp CC-EETTEECCTTCCEECCTTCEEEECTTSGGGCEEEEEEE
T ss_pred Ce-EECCEEcCCCCeEEcCCCCEEEECCCccCceEEEEEEe
Confidence 99 799999999999999999999999864 45688764
No 87
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.44 E-value=5.3e-13 Score=152.56 Aligned_cols=246 Identities=13% Similarity=0.158 Sum_probs=166.7
Q ss_pred cccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecC
Q 001031 449 IEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (1183)
Q Consensus 449 ~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs~ 528 (1183)
-.++|+++-- .+..+..|....-..++++++ |. .+....+.|||.||+| .-..+||||||+.++.+++.++..
T Consensus 79 ~~~~~~~i~G--~~~~~~~l~~~i~~~~~~~~~--~~-~~~~~~~~vLl~GppG--tGKT~la~aia~~~~~~~~~i~~~ 151 (357)
T 3d8b_A 79 PPVNWEDIAG--VEFAKATIKEIVVWPMLRPDI--FT-GLRGPPKGILLFGPPG--TGKTLIGKCIASQSGATFFSISAS 151 (357)
T ss_dssp CCCCGGGSCS--CHHHHHHHHHHTHHHHHCTTT--SC-GGGSCCSEEEEESSTT--SSHHHHHHHHHHHTTCEEEEEEGG
T ss_pred CCCCHHHhCC--hHHHHHHHHHHHHHHhhChHh--Hh-hccCCCceEEEECCCC--CCHHHHHHHHHHHcCCeEEEEehH
Confidence 4689998744 488999999988777877765 32 2335567899999999 799999999999998887766653
Q ss_pred CCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCceeee
Q 001031 529 LLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVKFV 608 (1183)
Q Consensus 529 ~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk~~ 608 (1183)
.+.+.+.
T Consensus 152 ~l~~~~~------------------------------------------------------------------------- 158 (357)
T 3d8b_A 152 SLTSKWV------------------------------------------------------------------------- 158 (357)
T ss_dssp GGCCSST-------------------------------------------------------------------------
T ss_pred Hhhcccc-------------------------------------------------------------------------
Confidence 3222100
Q ss_pred ccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhHHH
Q 001031 609 GNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVDKL 688 (1183)
Q Consensus 609 g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~k~ 688 (1183)
.....
T Consensus 159 ---------------------------------------------------------------------------g~~~~ 163 (357)
T 3d8b_A 159 ---------------------------------------------------------------------------GEGEK 163 (357)
T ss_dssp ---------------------------------------------------------------------------THHHH
T ss_pred ---------------------------------------------------------------------------chHHH
Confidence 00112
Q ss_pred HHHHHHHHHhhccCCCCEEEEEcChhhhhcCC--------hhhHHHHHHHHhcC----CCCEEEEEeccCCCcccccCCC
Q 001031 689 AINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENL----PSNVVVIGSHTQLDSRKEKSHP 756 (1183)
Q Consensus 689 ~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~~--------~~~~~~i~~~L~~L----~g~vivIgs~~~~d~~k~k~~~ 756 (1183)
.+..+|+.+.. .+|.||||||+|.+.... .++...+...|+.+ ..+|+|||++|
T Consensus 164 ~~~~~~~~a~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn----------- 229 (357)
T 3d8b_A 164 MVRALFAVARC---QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN----------- 229 (357)
T ss_dssp HHHHHHHHHHH---TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEES-----------
T ss_pred HHHHHHHHHHh---cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecC-----------
Confidence 25556666654 689999999999976532 13333444445543 36899999999
Q ss_pred CCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHHHHHHHHhhhhhhhhhccch
Q 001031 757 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNI 836 (1183)
Q Consensus 757 ~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~I 836 (1183)
.|+.+++ +++|||...+++++|+...|.+|
T Consensus 230 -------------------~~~~l~~-------------------------------~l~~Rf~~~i~i~~p~~~~r~~i 259 (357)
T 3d8b_A 230 -------------------RPQEIDE-------------------------------AARRRLVKRLYIPLPEASARKQI 259 (357)
T ss_dssp -------------------CGGGBCH-------------------------------HHHTTCCEEEECCCCCHHHHHHH
T ss_pred -------------------ChhhCCH-------------------------------HHHhhCceEEEeCCcCHHHHHHH
Confidence 3333443 67777777777888888888888
Q ss_pred hHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhHHHHHhhhhhhhh
Q 001031 837 ISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQGIQSESKS 916 (1183)
Q Consensus 837 l~IHT~l~~~~l~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~dF~~al~eikp 916 (1183)
++.+.......+.+.+++.|+..+.||++++|+.||..|...++.+...... ..........+...+|..++.+.+|
T Consensus 260 l~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~---~~~~~~~~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 260 VINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADI---ATITPDQVRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp HHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-------------CCCBCHHHHHHHHHHHGG
T ss_pred HHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhh---ccccccccCCcCHHHHHHHHHhcCC
Confidence 7776443334467888999999999999999999999999888865432111 1111112234567888888777665
No 88
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.44 E-value=5.5e-12 Score=142.87 Aligned_cols=202 Identities=14% Similarity=0.062 Sum_probs=138.6
Q ss_pred cccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCc--eEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccc
Q 001031 948 FDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCK--GILLFGPPGTGKTMLAKAVATEA----GANFINISMSSIT 1021 (1183)
Q Consensus 948 fdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~--gVLL~GPPGTGKT~LAkAIA~eL----g~pfi~I~~s~L~ 1021 (1183)
+++++|.+...+.+.+.+...+. + ..+. .++|+||||+|||+|++++++.+ +.+++.++|....
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~-------~---~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLR-------N---PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHH-------S---TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred CCCCCChHHHHHHHHHHHHHHHc-------C---CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 46899999999999887753221 1 1223 79999999999999999999998 6788999976533
Q ss_pred cc---------c-------ccc-hHHHHHHHHHHHhc-cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCc
Q 001031 1022 SK---------W-------FGE-GEKYVKAVFSLASK-IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLR 1083 (1183)
Q Consensus 1022 s~---------~-------~Ge-sE~~Ir~lF~~A~k-~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~ 1083 (1183)
.. . .+. .......+...... ..|.||||||+|.+ + ...+..|+..+....
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----~-------~~~~~~L~~~~~~~~ 153 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----A-------PDILSTFIRLGQEAD 153 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----C-------HHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----c-------hHHHHHHHHHHHhCC
Confidence 21 0 011 12222233333322 35789999999987 1 123344444443322
Q ss_pred ccCCCCEEEEEecCCC---CCCcHHHHhccCc-EEEecCCCHHHHHHHHHHHHhh---ccCCChhhHHHHHHHcC-----
Q 001031 1084 TKDKERVLVLAATNRP---FDLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAK---EELASDVDLEGIANMAD----- 1151 (1183)
Q Consensus 1084 ~k~~~~VlVIaTTN~p---~~Ld~aLlrRFd~-vI~I~lPd~eeR~eILk~iL~k---~~l~~didl~~LA~~Te----- 1151 (1183)
.....++.+|++||.+ ..+++.+.+||.. .+.++.++.++..++++..+.. ....++..+..++..+.
T Consensus 154 ~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 233 (389)
T 1fnn_A 154 KLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPL 233 (389)
T ss_dssp HHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTT
T ss_pred CCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccC
Confidence 1111468889998877 6788999999875 8999999999999999998865 22345667888999983
Q ss_pred ---CCcHHHHHHHHHHHHHHhHH
Q 001031 1152 ---GYSGSDLKNLCVTAAHCPIR 1171 (1183)
Q Consensus 1152 ---GySg~DL~~L~~~Aa~~Air 1171 (1183)
+-..+.+.++|+.|+..+..
T Consensus 234 ~~~~G~~r~~~~~l~~a~~~a~~ 256 (389)
T 1fnn_A 234 DTNRGDARLAIDILYRSAYAAQQ 256 (389)
T ss_dssp CTTSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHH
Confidence 22567788888888776543
No 89
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=3e-12 Score=141.64 Aligned_cols=189 Identities=24% Similarity=0.273 Sum_probs=130.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC-----CcEEEEecCc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG-----ANFINISMSS 1019 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg-----~pfi~I~~s~ 1019 (1183)
..+|++++|++.+++.|...+.. + +. .++||+||||+|||++|+++++.+. ..++.+++++
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~----------~---~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKT----------G---SM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHH----------T---CC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred CCCHHHhhCCHHHHHHHHHHHHc----------C---CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence 35789999999999999887752 1 12 3599999999999999999999863 3477887765
Q ss_pred cccccccchHHHHHHHHHHH--hccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecC
Q 001031 1020 ITSKWFGEGEKYVKAVFSLA--SKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN 1097 (1183)
Q Consensus 1020 L~s~~~GesE~~Ir~lF~~A--~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN 1097 (1183)
..+. ......+....... ....+.||||||+|.+. ... .+.|+..++. ....+.+|+++|
T Consensus 87 ~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----~~~-------~~~L~~~le~----~~~~~~~i~~~~ 148 (327)
T 1iqp_A 87 ERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALT-----QDA-------QQALRRTMEM----FSSNVRFILSCN 148 (327)
T ss_dssp HHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----HHH-------HHHHHHHHHH----TTTTEEEEEEES
T ss_pred cCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----HHH-------HHHHHHHHHh----cCCCCeEEEEeC
Confidence 3221 11111122211100 11357899999999882 111 2223333322 125678888999
Q ss_pred CCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001031 1098 RPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1167 (1183)
Q Consensus 1098 ~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~ 1167 (1183)
.+..+.+++.+|+. .+.++.++.++..++++.++...++. ++..+..|+..+.| +.+.+.++++.++.
T Consensus 149 ~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~ 217 (327)
T 1iqp_A 149 YSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAA 217 (327)
T ss_dssp CGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred CccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHh
Confidence 99999999999994 88999999999999999988766543 55567888888876 45555566665553
No 90
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=3.1e-12 Score=144.10 Aligned_cols=202 Identities=16% Similarity=0.208 Sum_probs=137.0
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------CCcEEEEecCcc
Q 001031 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------GANFINISMSSI 1020 (1183)
Q Consensus 947 tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL------g~pfi~I~~s~L 1020 (1183)
.+++++|.+...+.|.+.+...+. ...+..++|+||+|+|||+|++++++.+ +.+++.+++...
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~----------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR----------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG----------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 457899999999999886643211 1234679999999999999999999988 889999987542
Q ss_pred cc------c----------cccc-hHHHHHHHHHHHhccC-CeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCC
Q 001031 1021 TS------K----------WFGE-GEKYVKAVFSLASKIA-PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL 1082 (1183)
Q Consensus 1021 ~s------~----------~~Ge-sE~~Ir~lF~~A~k~~-PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl 1082 (1183)
.. . ..+. .......++....... |.||||||++.+..... . .++..++..++..
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----~----~~l~~l~~~~~~~ 159 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----D----DILYKLSRINSEV 159 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----S----THHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----C----HHHHHHhhchhhc
Confidence 11 0 0111 2233455555554443 89999999998853321 1 1333444444332
Q ss_pred cccCCCCEEEEEecCCC---CCCcHHHHhccC-cEEEecCCCHHHHHHHHHHHHhhc---cCCChhhHHHHHHHcC---C
Q 001031 1083 RTKDKERVLVLAATNRP---FDLDEAVVRRLP-RRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGIANMAD---G 1152 (1183)
Q Consensus 1083 ~~k~~~~VlVIaTTN~p---~~Ld~aLlrRFd-~vI~I~lPd~eeR~eILk~iL~k~---~l~~didl~~LA~~Te---G 1152 (1183)
...++.+|++|+.+ ..+++.+.+||. ..+.++.++.++..++++..+... ....+..+..++..+. |
T Consensus 160 ---~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G 236 (386)
T 2qby_A 160 ---NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG 236 (386)
T ss_dssp ---CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC
T ss_pred ---CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 23578888888876 467888889886 489999999999999999887642 1234555777887776 5
Q ss_pred CcHHHHHHHHHHHHHHhH
Q 001031 1153 YSGSDLKNLCVTAAHCPI 1170 (1183)
Q Consensus 1153 ySg~DL~~L~~~Aa~~Ai 1170 (1183)
.++.+.++|..|+..+.
T Consensus 237 -~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 237 -DARRALDLLRVSGEIAE 253 (386)
T ss_dssp -CHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHH
Confidence 45566678888776554
No 91
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.42 E-value=3.9e-13 Score=156.08 Aligned_cols=109 Identities=25% Similarity=0.389 Sum_probs=98.9
Q ss_pred CCccceeccccCCCCceeeecceeEEccCCccceeecCCCC---------CccceEEEEe-ecCCcceEEEEEecCCceE
Q 001031 131 RIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSI---------SKNLCRLRRI-ENGGPSGALLEITGGKGEV 200 (1183)
Q Consensus 131 ~~pW~rL~s~~~~~p~~~i~~~~~t~G~~~~cd~~l~d~~~---------s~~~c~l~~~-~~~g~~~a~le~~~~~G~v 200 (1183)
..|||+|.+....++.+++....|+|||+..||+.|+|+.+ |..||+|++. ..++..+++|+|.|+|||
T Consensus 7 ~~~~g~l~~~~~~~~~~~l~~~~~~iGR~~~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D~S~nGt- 85 (419)
T 3i6u_A 7 PAPWARLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSGNGT- 85 (419)
T ss_dssp CCCSEEEEECSSSSCCEEECSSEEEEESSTTSSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEECCSSCE-
T ss_pred CCCceEeeecCCCCCceEecCCCEEecCCCccCEEECCcccccccccccccccceEEEEEcCCCCceEEEEEECCcCCc-
Confidence 34999999999999999999999999999999999999986 9999999765 345566799999999999
Q ss_pred EEcCeecCCCceEEeeCCCEEEEccCCCeeEEeeecCccc
Q 001031 201 EVNGNVHPKDSQVVLRGGDELVFSPSGKHSYIFQQLSDDT 240 (1183)
Q Consensus 201 ~vNg~~~~k~~~~~L~~gDev~f~~~~~~ayifq~l~~~~ 240 (1183)
+|||+.++|+.+.+|++||+|.|+...++.|+|+++..+.
T Consensus 86 ~vn~~~~~~~~~~~l~~~d~i~~~~~~~~~~~~~~~~~~~ 125 (419)
T 3i6u_A 86 FVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTVDD 125 (419)
T ss_dssp EETTEECCTTCEEECCTTEEEEESSTTCEEEEEEESCSSC
T ss_pred eECcccccCCCcccCCCCCEeeeeccccceEEEecccccc
Confidence 6999999999999999999999999999999999886443
No 92
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.41 E-value=1.4e-11 Score=139.55 Aligned_cols=197 Identities=22% Similarity=0.243 Sum_probs=134.2
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccc
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWF 1025 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~ 1025 (1183)
.+|++++|.+.+++.+...+..... . ..++.+++|+||||+|||+|+++||+.++.++...++..+..
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~------~---~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~--- 89 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKM------R---GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--- 89 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHH------H---TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHh------c---CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC---
Confidence 4788999999888888766642110 0 124467999999999999999999999999887776544321
Q ss_pred cchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhc-------CCcc----cCCCCEEEEE
Q 001031 1026 GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD-------GLRT----KDKERVLVLA 1094 (1183)
Q Consensus 1026 GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ld-------gl~~----k~~~~VlVIa 1094 (1183)
...+..++.. .....|+||||++.+.. ...+.+ . ..+.... +... ..-..+.+++
T Consensus 90 ---~~~l~~~~~~--~~~~~v~~iDE~~~l~~-----~~~e~L---~-~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 90 ---QGDMAAILTS--LERGDVLFIDEIHRLNK-----AVEELL---Y-SAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp ---HHHHHHHHHH--CCTTCEEEEETGGGCCH-----HHHHHH---H-HHHHTSCCCC---------------CCCEEEE
T ss_pred ---HHHHHHHHHH--ccCCCEEEEcchhhcCH-----HHHHHH---H-HHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 1223333332 22467999999998831 111111 1 1111110 0000 0013467788
Q ss_pred ecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHHHh
Q 001031 1095 ATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAHCP 1169 (1183)
Q Consensus 1095 TTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~~A 1169 (1183)
+|+.+..|+..+++||...+.++.++.+++.++++.......+. ++..+..|+..+.|. ++++.++++.+...|
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~-~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGT-PRIAIRLTKRVRDML 230 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTC-HHHHHHHHHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCC-hHHHHHHHHHHHHHH
Confidence 89999999999999998889999999999999999987765443 455688899998874 577778887765544
No 93
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=3.9e-12 Score=143.37 Aligned_cols=189 Identities=14% Similarity=0.180 Sum_probs=125.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--------------
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-------------- 1010 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-------------- 1010 (1183)
..+|++++|++.+.+.+...+.. . .+.++ +||+||+|+|||++++++++.+..
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~---------~---~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQ---------P---RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTC---------T---TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred CCCHHHhcCCHHHHHHHHHHHhh---------C---CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 45799999999999888775510 1 22334 999999999999999999996521
Q ss_pred ---------------cEEEEecCccccccccchHHHHHHHHHHHh--------------ccCCeEEEEeCCcccccCCCC
Q 001031 1011 ---------------NFINISMSSITSKWFGEGEKYVKAVFSLAS--------------KIAPSVVFVDEVDSMLGRREN 1061 (1183)
Q Consensus 1011 ---------------pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~--------------k~~PsILfIDEID~Ll~~r~~ 1061 (1183)
+++.++..+.. ......++..+..+. ...|.||+|||++.| +
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L-----~ 147 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL-----T 147 (354)
T ss_dssp ---------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS-----C
T ss_pred ccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc-----C
Confidence 12222221110 001112444444332 225679999999986 2
Q ss_pred cchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-C-
Q 001031 1062 PGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-S- 1139 (1183)
Q Consensus 1062 ~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~- 1139 (1183)
... .+.++..+... ...+.+|.+|+.+..+.+++++|+ .++.++.|+.++..++++.++.+.++. +
T Consensus 148 ~~~-------~~~L~~~le~~----~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 215 (354)
T 1sxj_E 148 KDA-------QAALRRTMEKY----SKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQLET 215 (354)
T ss_dssp HHH-------HHHHHHHHHHS----TTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCEECC
T ss_pred HHH-------HHHHHHHHHhh----cCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCc
Confidence 111 22233333222 135788888999999999999999 889999999999999999998876543 4
Q ss_pred hhhHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001031 1140 DVDLEGIANMADGYSGSDLKNLCVTAAHC 1168 (1183)
Q Consensus 1140 didl~~LA~~TeGySg~DL~~L~~~Aa~~ 1168 (1183)
+..+..|+..+.| +.+++.++++.++..
T Consensus 216 ~~~l~~i~~~~~G-~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 216 KDILKRIAQASNG-NLRVSLLMLESMALN 243 (354)
T ss_dssp SHHHHHHHHHHTT-CHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 5668889988876 455666666665543
No 94
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.39 E-value=7.4e-13 Score=148.45 Aligned_cols=192 Identities=16% Similarity=0.199 Sum_probs=122.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc---
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--- 1023 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~--- 1023 (1183)
+++|....++.+.+.+... .....+|||+||||||||++|++|++.. +.+|+.++|+.+...
T Consensus 3 ~iig~s~~~~~~~~~~~~~------------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV------------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH------------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CcEECCHHHHHHHHHHHHH------------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 5788888888887776531 1223579999999999999999999976 689999999875432
Q ss_pred --cccch----H---HHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCC-------cccCC
Q 001031 1024 --WFGEG----E---KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL-------RTKDK 1087 (1183)
Q Consensus 1024 --~~Ges----E---~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl-------~~k~~ 1087 (1183)
.+|.. . ......|..|. .++||||||+.|- ... ...|+..++.. ....+
T Consensus 71 ~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~-----~~~-------q~~Ll~~l~~~~~~~~g~~~~~~ 135 (304)
T 1ojl_A 71 SELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDIS-----PLM-------QVRLLRAIQEREVQRVGSNQTIS 135 (304)
T ss_dssp HHHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCC-----HHH-------HHHHHHHHHSSBCCBTTBCCCCB
T ss_pred HHhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCC-----HHH-------HHHHHHHHhcCEeeecCCccccc
Confidence 12210 0 01123444443 4899999999882 111 22233323221 11123
Q ss_pred CCEEEEEecCCC-------CCCcHHHHhccCcEEEecCCCHHHH----HHHHHHHHhhc----c----CCChhhHHHHHH
Q 001031 1088 ERVLVLAATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNR----EKIIRVILAKE----E----LASDVDLEGIAN 1148 (1183)
Q Consensus 1088 ~~VlVIaTTN~p-------~~Ld~aLlrRFd~vI~I~lPd~eeR----~eILk~iL~k~----~----l~~didl~~LA~ 1148 (1183)
.++.||+|||.. ..+.+.+..||. .+.+.+|...+| ..++++++.+. . ..++..+..|..
T Consensus 136 ~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~ 214 (304)
T 1ojl_A 136 VDVRLIAATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIH 214 (304)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHH
T ss_pred CCeEEEEecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHc
Confidence 568999999875 346778888984 677777776655 34666665431 1 123444666666
Q ss_pred HcCCCcHHHHHHHHHHHHHHh
Q 001031 1149 MADGYSGSDLKNLCVTAAHCP 1169 (1183)
Q Consensus 1149 ~TeGySg~DL~~L~~~Aa~~A 1169 (1183)
..-....++|.+++..|+..+
T Consensus 215 ~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 215 YDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp CCCSSHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHhC
Confidence 652336689999998887654
No 95
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.38 E-value=7.6e-13 Score=152.60 Aligned_cols=258 Identities=16% Similarity=0.206 Sum_probs=167.5
Q ss_pred HHHHHhhcccCCCccccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHH
Q 001031 435 FKDSLQEGILGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKAL 514 (1183)
Q Consensus 435 ~k~~l~~~i~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKAL 514 (1183)
+.+.+.+.++++ .-.++|+++-.. +..+..|.......+.++++ | ..+....+.|||.||+| ....+||+|+
T Consensus 97 ~~~~~~~~~~~~-~~~~~~~~iiG~--~~~~~~l~~~~~~~~~~~~~--~-~~~~~~~~~vLL~GppG--tGKT~la~ai 168 (389)
T 3vfd_A 97 LANLIMNEIVDN-GTAVKFDDIAGQ--DLAKQALQEIVILPSLRPEL--F-TGLRAPARGLLLFGPPG--NGKTMLAKAV 168 (389)
T ss_dssp CCTTGGGTTBCC-SCCCCGGGSCSC--HHHHHHHHHHTHHHHHCTTT--S-CGGGCCCSEEEEESSTT--SCHHHHHHHH
T ss_pred HHHHHHhhhhcc-CCCCChHHhCCH--HHHHHHHHHHHHHhccCHHH--h-cccCCCCceEEEECCCC--CCHHHHHHHH
Confidence 334455556654 357899998776 88999999988878877665 2 23344578999999999 7899999999
Q ss_pred HhhcCCeEEEEecCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccc
Q 001031 515 AKHFSARLLIVDSLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASS 594 (1183)
Q Consensus 515 A~~f~a~LLilDs~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 594 (1183)
|++++.+++.++...+.+.+.
T Consensus 169 a~~~~~~~~~v~~~~l~~~~~----------------------------------------------------------- 189 (389)
T 3vfd_A 169 AAESNATFFNISAASLTSKYV----------------------------------------------------------- 189 (389)
T ss_dssp HHHTTCEEEEECSCCC----------------------------------------------------------------
T ss_pred HHhhcCcEEEeeHHHhhcccc-----------------------------------------------------------
Confidence 999998887776543332110
Q ss_pred cccccccCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCccccccc
Q 001031 595 KNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASS 674 (1183)
Q Consensus 595 ~~~~~~~gdrvk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~ 674 (1183)
|.
T Consensus 190 --------------g~---------------------------------------------------------------- 191 (389)
T 3vfd_A 190 --------------GE---------------------------------------------------------------- 191 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------ch----------------------------------------------------------------
Confidence 00
Q ss_pred ccccCCCcchhHHHHHHHHHHHHhhccCCCCEEEEEcChhhhhcCC--------hhhHHHHHHHHhcC----CCCEEEEE
Q 001031 675 LRLDSSLGDEVDKLAINELFEVALNESKSSPLIVFVKDIEKSLTGN--------NDAYGALKSKLENL----PSNVVVIG 742 (1183)
Q Consensus 675 ~~~d~~~~~~~~k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~~--------~~~~~~i~~~L~~L----~g~vivIg 742 (1183)
....+..+|+.+.. .+|.||||||||.++... .++...+...|+.+ ...|+|||
T Consensus 192 -----------~~~~~~~~~~~a~~---~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~ 257 (389)
T 3vfd_A 192 -----------GEKLVRALFAVARE---LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMG 257 (389)
T ss_dssp -----------CHHHHHHHHHHHHH---SSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEE
T ss_pred -----------HHHHHHHHHHHHHh---cCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEE
Confidence 01125566666665 688999999999976521 22233333333333 45799999
Q ss_pred eccCCCcccccCCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHHHHHHH
Q 001031 743 SHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQ 822 (1183)
Q Consensus 743 s~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq 822 (1183)
++| .|+.+++ +++|||...
T Consensus 258 atn------------------------------~~~~l~~-------------------------------~l~~R~~~~ 276 (389)
T 3vfd_A 258 ATN------------------------------RPQELDE-------------------------------AVLRRFIKR 276 (389)
T ss_dssp EES------------------------------CGGGCCH-------------------------------HHHTTCCEE
T ss_pred ecC------------------------------CchhcCH-------------------------------HHHcCcceE
Confidence 999 3333443 666666656
Q ss_pred HhhhhhhhhhccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhh
Q 001031 823 LERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMY 902 (1183)
Q Consensus 823 ~e~~Lpd~~gR~~Il~IHT~l~~~~l~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv 902 (1183)
+++++|+...|..|++.+.......+.+.++..|+..+.||++++|..||..|...++.+........ .+..+...+
T Consensus 277 i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~---~~~~~~~~i 353 (389)
T 3vfd_A 277 VYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKN---MSASEMRNI 353 (389)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---C---CSSSCCCCC
T ss_pred EEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhc---cchhhcCCc
Confidence 66666776666666665432223346778899999999999999999999999999887654322111 111122345
Q ss_pred hHHHHHhhhhhhh
Q 001031 903 GLNILQGIQSESK 915 (1183)
Q Consensus 903 ~~~dF~~al~eik 915 (1183)
...+|..++...+
T Consensus 354 ~~~d~~~al~~~~ 366 (389)
T 3vfd_A 354 RLSDFTESLKKIK 366 (389)
T ss_dssp CHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHcC
Confidence 6677776655443
No 96
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.37 E-value=1.2e-12 Score=155.46 Aligned_cols=127 Identities=20% Similarity=0.358 Sum_probs=96.2
Q ss_pred HHHHHHHHhhccCCCCEEEEEcChhhhhcCC-----------hhhHHHHHHHHhcC--CCCEEEEEeccCCCcccccCCC
Q 001031 690 INELFEVALNESKSSPLIVFVKDIEKSLTGN-----------NDAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHP 756 (1183)
Q Consensus 690 ~~~l~evl~s~~~~~P~Ilf~~Die~~l~~~-----------~~~~~~i~~~L~~L--~g~vivIgs~~~~d~~k~k~~~ 756 (1183)
+..+|+.+.. ..|.||||||+|.+.... .+..+.+-..|+.+ ..+|+||++||
T Consensus 97 ~r~lf~~A~~---~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn----------- 162 (476)
T 2ce7_A 97 VRDLFAQAKA---HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATN----------- 162 (476)
T ss_dssp HHHHHHHHHH---TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEES-----------
T ss_pred HHHHHHHHHh---cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecC-----------
Confidence 4455666555 689999999999964421 12334444445544 34899999999
Q ss_pred CCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhhcc
Q 001031 757 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQS 834 (1183)
Q Consensus 757 ~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~ 834 (1183)
.|+.+|+ +++| ||++++++++|+...|.
T Consensus 163 -------------------~~~~Ld~-------------------------------allR~gRFd~~i~i~~Pd~~~R~ 192 (476)
T 2ce7_A 163 -------------------RPDILDP-------------------------------ALLRPGRFDKKIVVDPPDMLGRK 192 (476)
T ss_dssp -------------------CGGGSCG-------------------------------GGGSTTSSCEEEECCCCCHHHHH
T ss_pred -------------------Chhhhch-------------------------------hhcccCcceeEeecCCCCHHHHH
Confidence 4444554 7777 89989999999999999
Q ss_pred chhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhh
Q 001031 835 NIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 882 (1183)
Q Consensus 835 ~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r 882 (1183)
+|+++|.. ..++ +++++..|+..+.||+|+||+.+|..|+.++..+
T Consensus 193 ~Il~~~~~--~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~ 239 (476)
T 2ce7_A 193 KILEIHTR--NKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE 239 (476)
T ss_dssp HHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH--hCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHc
Confidence 99999854 3344 5678999999999999999999999999988753
No 97
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.37 E-value=7.4e-13 Score=156.21 Aligned_cols=108 Identities=17% Similarity=0.194 Sum_probs=78.2
Q ss_pred eEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEe---------cC---CCCCCcHHHHhccCc
Q 001031 1045 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA---------TN---RPFDLDEAVVRRLPR 1112 (1183)
Q Consensus 1045 sILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaT---------TN---~p~~Ld~aLlrRFd~ 1112 (1183)
.|+||||+|.|- ....+.|+..+..- ..+++|++| ++ .++.|++.+++||.
T Consensus 297 ~VliIDEa~~l~------------~~a~~aLlk~lEe~----~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~- 359 (456)
T 2c9o_A 297 GVLFVDEVHMLD------------IECFTYLHRALESS----IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVM- 359 (456)
T ss_dssp CEEEEESGGGCB------------HHHHHHHHHHTTST----TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEE-
T ss_pred eEEEEechhhcC------------HHHHHHHHHHhhcc----CCCEEEEecCCccccccccccccccccCChhHHhhcc-
Confidence 699999999982 23445555555532 244655565 33 26789999999995
Q ss_pred EEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHc-CCCcHHHHHHHHHHHHHHhH
Q 001031 1113 RLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMA-DGYSGSDLKNLCVTAAHCPI 1170 (1183)
Q Consensus 1113 vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~T-eGySg~DL~~L~~~Aa~~Ai 1170 (1183)
.+.++.++.++..++++..+...... ++..+..++..+ +| +++....+++.|...|.
T Consensus 360 ~~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~ 418 (456)
T 2c9o_A 360 IIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAK 418 (456)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHh
Confidence 47999999999999999988755443 555678888887 65 67777788888766554
No 98
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.34 E-value=1.2e-12 Score=156.37 Aligned_cols=200 Identities=17% Similarity=0.116 Sum_probs=118.2
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecC-----cccc
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS-----SITS 1022 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg--~pfi~I~~s-----~L~s 1022 (1183)
.|+|.+++++.+...+.. ..+|||+||||||||+||++||+.++ .+|..+.+. ++++
T Consensus 23 ~ivGq~~~i~~l~~al~~----------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS----------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH----------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhHHHHHHHHHHHHHHhc----------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 578889888877665531 14799999999999999999999884 456655543 2222
Q ss_pred ccccchHHHHHHHHHHHhcc---CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCC
Q 001031 1023 KWFGEGEKYVKAVFSLASKI---APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP 1099 (1183)
Q Consensus 1023 ~~~GesE~~Ir~lF~~A~k~---~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p 1099 (1183)
.+.+.... -...|..+... .++|||||||+.+ ++..+..+..++++....+.|.....+.++ +|+|||+.
T Consensus 87 ~~~~~~~~-~~g~~~~~~~g~l~~~~IL~IDEI~r~-----~~~~q~~LL~~lee~~v~i~G~~~~~~~~~-iI~ATN~l 159 (500)
T 3nbx_X 87 PLSIQALK-DEGRYERLTSGYLPEAEIVFLDEIWKA-----GPAILNTLLTAINERQFRNGAHVEKIPMRL-LVAASNEL 159 (500)
T ss_dssp CBC-----------CBCCTTSGGGCSEEEEESGGGC-----CHHHHHHHHHHHHSSEEECSSSEEECCCCE-EEEEESSC
T ss_pred cccHHHHh-hchhHHhhhccCCCcceeeeHHhHhhh-----cHHHHHHHHHHHHHHhccCCCCcCCcchhh-hhhccccC
Confidence 22111110 12223222221 4679999999876 222232332222222222233333333444 56666753
Q ss_pred C---CCcHHHHhccCcEEEecCCCH-HHHHHHHHHHHh-------------------------hccCCChhhHHHHHHHc
Q 001031 1100 F---DLDEAVVRRLPRRLMVNLPDA-PNREKIIRVILA-------------------------KEELASDVDLEGIANMA 1150 (1183)
Q Consensus 1100 ~---~Ld~aLlrRFd~vI~I~lPd~-eeR~eILk~iL~-------------------------k~~l~~didl~~LA~~T 1150 (1183)
. .+.+++++||...+.++.|+. +++..|++.... ...+ ++..++.++...
T Consensus 160 pe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v-~d~v~e~i~~l~ 238 (500)
T 3nbx_X 160 PEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITL-PDHVFELIFMLR 238 (500)
T ss_dssp CCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBC-CHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccC-chHHHHHHHHHH
Confidence 2 255799999988899999987 678888876432 1111 223344444443
Q ss_pred ---------CCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1151 ---------DGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1151 ---------eGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
.|.+.+.+..+++.|...|.-+.
T Consensus 239 ~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~g 270 (500)
T 3nbx_X 239 QQLDKLPDAPYVSDRRWKKAIRLLQASAFFSG 270 (500)
T ss_dssp HHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhcCCCCCccchhHHHHHHHHHHHHHhhcC
Confidence 47899999999988877776544
No 99
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.31 E-value=4.6e-12 Score=125.82 Aligned_cols=87 Identities=22% Similarity=0.294 Sum_probs=70.8
Q ss_pred ceeee-cceeEEccCCccceeecCCCCCccceEEEEeec-------CCcceEEEEEe-cCCceEEEcCeecCCCceEEee
Q 001031 146 HLSMT-GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIEN-------GGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLR 216 (1183)
Q Consensus 146 ~~~i~-~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~-------~g~~~a~le~~-~~~G~v~vNg~~~~k~~~~~L~ 216 (1183)
.+.+. ++.|+|||+..||+.|+|+.+|..||.|..-.. ......+|+|. |+||| ||||+++.+++.+.|+
T Consensus 34 ~~~L~~~~~~~IGR~~~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~StNGT-~vNg~ri~~~~~~~L~ 112 (130)
T 4h87_A 34 TRSLKGTSYCLFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGT-FLNKTRIPPRTYCRVH 112 (130)
T ss_dssp EEECTTCSEEEEESSTTSSEECCCTTSCSSCEEEEEBCCCCCC------CCEEEEECSCSSCE-EETTEECCTTCCEECC
T ss_pred eEEeCCCceEEEcCCcCCCEEeCCCCcchhcEEEEEecccCccceeccCCcceEeeCCCCCce-EECCEECCCCceeECC
Confidence 44554 367999999999999999999999999964211 11123778886 78999 7999999999999999
Q ss_pred CCCEEEEccCCCeeEEee
Q 001031 217 GGDELVFSPSGKHSYIFQ 234 (1183)
Q Consensus 217 ~gDev~f~~~~~~ayifq 234 (1183)
.||+|.|+.+.+ .||||
T Consensus 113 ~GD~I~~G~str-~yvl~ 129 (130)
T 4h87_A 113 VGHVVRFGGSTR-LFILQ 129 (130)
T ss_dssp TTCEEEETTCSE-EEEEE
T ss_pred CCCEEEECCceE-EEEEc
Confidence 999999998877 59987
No 100
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.30 E-value=9.8e-12 Score=134.59 Aligned_cols=127 Identities=17% Similarity=0.339 Sum_probs=85.4
Q ss_pred HHHHHHHHhhccCCCCEEEEEcChhhhhcCC--------h---hhHHHHHHHHhcC--CCCEEEEEeccCCCcccccCCC
Q 001031 690 INELFEVALNESKSSPLIVFVKDIEKSLTGN--------N---DAYGALKSKLENL--PSNVVVIGSHTQLDSRKEKSHP 756 (1183)
Q Consensus 690 ~~~l~evl~s~~~~~P~Ilf~~Die~~l~~~--------~---~~~~~i~~~L~~L--~g~vivIgs~~~~d~~k~k~~~ 756 (1183)
+..+|+.+.. ..|.||||+|+|.+.... . +....+-..|+.+ ..+++||+++|
T Consensus 93 ~~~~~~~a~~---~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn----------- 158 (257)
T 1lv7_A 93 VRDMFEQAKK---AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATN----------- 158 (257)
T ss_dssp HHHHHHHHHT---TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEES-----------
T ss_pred HHHHHHHHHH---cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeC-----------
Confidence 3444554433 678999999999865421 1 2334444455555 35899999999
Q ss_pred CCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhhcc
Q 001031 757 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQS 834 (1183)
Q Consensus 757 ~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~ 834 (1183)
.|+.+++ +++| ||++.+++++|+...|.
T Consensus 159 -------------------~~~~l~~-------------------------------~l~r~~rf~~~i~i~~P~~~~r~ 188 (257)
T 1lv7_A 159 -------------------RPDVLDP-------------------------------ALLRPGRFDRQVVVGLPDVRGRE 188 (257)
T ss_dssp -------------------CTTTSCG-------------------------------GGGSTTSSCEEEECCCCCHHHHH
T ss_pred -------------------CchhCCH-------------------------------HHcCCCcCCeEEEeCCCCHHHHH
Confidence 4444554 4444 55555566666666666
Q ss_pred chhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhh
Q 001031 835 NIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 882 (1183)
Q Consensus 835 ~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r 882 (1183)
+|++.|. ...++ ++.++..++..+.||+++||+.+|..|+.+|..+
T Consensus 189 ~il~~~~--~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~ 235 (257)
T 1lv7_A 189 QILKVHM--RRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 235 (257)
T ss_dssp HHHHHHH--TTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH--hcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 6666653 33344 5667788999999999999999999999988764
No 101
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.30 E-value=4.8e-12 Score=138.56 Aligned_cols=215 Identities=20% Similarity=0.275 Sum_probs=148.0
Q ss_pred ccccccccccccchhhHHHHHHhhhhhhccccccc-cccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001031 448 NIEVSFESFPYYLSDITKNVLIASTYVHLKCNNFA-KYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1183)
Q Consensus 448 ~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~-k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilD 526 (1183)
.-.++|+++.-+ +..+..|.......+++++.- +++ + ...+.|||.||+| ....+||||||+.++.+++.++
T Consensus 11 ~~~~~~~~i~G~--~~~~~~l~~~~~~~~~~~~~~~~~~--~-~~~~~~ll~G~~G--tGKT~la~~la~~~~~~~~~v~ 83 (285)
T 3h4m_A 11 RPNVRYEDIGGL--EKQMQEIREVVELPLKHPELFEKVG--I-EPPKGILLYGPPG--TGKTLLAKAVATETNATFIRVV 83 (285)
T ss_dssp SCCCCGGGSCSC--HHHHHHHHHHTHHHHHCHHHHHHHC--C-CCCSEEEEESSSS--SSHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCHHHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcC--C-CCCCeEEEECCCC--CcHHHHHHHHHHHhCCCEEEEe
Confidence 346889998877 999999999888888886653 332 2 3356699999999 7899999999999988877765
Q ss_pred cCCCCCCCCccccccccchhhhhhhHHHHHHHhhhccCCCCccccccccccccccCCCCCCCcccccccccccccCCcee
Q 001031 527 SLLLPGGSSKEADSVKESSRTEKASMFAKRAALLQHRKPTSSVEADITGGTAVGSQALPKPEISTASSKNYTFKKGDRVK 606 (1183)
Q Consensus 527 s~~~~g~~~~e~~~~~~~~~~e~~s~~~k~s~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gdrvk 606 (1183)
...+.+...
T Consensus 84 ~~~~~~~~~----------------------------------------------------------------------- 92 (285)
T 3h4m_A 84 GSELVKKFI----------------------------------------------------------------------- 92 (285)
T ss_dssp GGGGCCCST-----------------------------------------------------------------------
T ss_pred hHHHHHhcc-----------------------------------------------------------------------
Confidence 432222100
Q ss_pred eeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCCCCCCCcccccccccccCCCcchhH
Q 001031 607 FVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFCEDDHGFFCTASSLRLDSSLGDEVD 686 (1183)
Q Consensus 607 ~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 686 (1183)
...
T Consensus 93 -----------------------------------------------------------------------------~~~ 95 (285)
T 3h4m_A 93 -----------------------------------------------------------------------------GEG 95 (285)
T ss_dssp -----------------------------------------------------------------------------THH
T ss_pred -----------------------------------------------------------------------------chH
Confidence 001
Q ss_pred HHHHHHHHHHHhhccCCCCEEEEEcChhhhhcC--------ChhhHHHHHH---HHhcC--CCCEEEEEeccCCCccccc
Q 001031 687 KLAINELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKS---KLENL--PSNVVVIGSHTQLDSRKEK 753 (1183)
Q Consensus 687 k~~~~~l~evl~s~~~~~P~Ilf~~Die~~l~~--------~~~~~~~i~~---~L~~L--~g~vivIgs~~~~d~~k~k 753 (1183)
.-.+..+|+.+.. ..|.||||||+|.+..+ ..+....+.. .++.+ .++++|||++|
T Consensus 96 ~~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn-------- 164 (285)
T 3h4m_A 96 ASLVKDIFKLAKE---KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATN-------- 164 (285)
T ss_dssp HHHHHHHHHHHHH---TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECS--------
T ss_pred HHHHHHHHHHHHH---cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCC--------
Confidence 1124555666555 68899999999997642 2222233333 33332 45899999999
Q ss_pred CCCCCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhh
Q 001031 754 SHPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLK 831 (1183)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~ 831 (1183)
.|+.+++ +++| ||++.++++.|+..
T Consensus 165 ----------------------~~~~l~~-------------------------------~l~~~~Rf~~~i~~~~p~~~ 191 (285)
T 3h4m_A 165 ----------------------RPDILDP-------------------------------AILRPGRFDRIIEVPAPDEK 191 (285)
T ss_dssp ----------------------CGGGBCH-------------------------------HHHSTTSEEEEEECCCCCHH
T ss_pred ----------------------CchhcCH-------------------------------HHcCCCcCCeEEEECCCCHH
Confidence 3344443 5555 66556666666666
Q ss_pred hccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhc
Q 001031 832 GQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHC 883 (1183)
Q Consensus 832 gR~~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~ 883 (1183)
.|.+|++.+. ...++ .+.++..|+..+.||++++|+.+|..|...|+.+.
T Consensus 192 ~r~~il~~~~--~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~ 242 (285)
T 3h4m_A 192 GRLEILKIHT--RKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL 242 (285)
T ss_dssp HHHHHHHHHH--TTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH--hcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 6666776653 22333 56788999999999999999999999999998754
No 102
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.29 E-value=5.4e-11 Score=134.39 Aligned_cols=173 Identities=21% Similarity=0.268 Sum_probs=118.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC-----cEEEEecCc
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA-----NFINISMSS 1019 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~-----pfi~I~~s~ 1019 (1183)
..+|+++.|++.+++.|...+.. + +. .++||+||||||||++|+++|+.+.. .++.++.++
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~----------g---~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDE----------G---KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD 86 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHT----------T---CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc----------C---CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence 35789999999999999887752 2 22 24999999999999999999999732 366676654
Q ss_pred cccccccchHHHHHHHHHHHh------ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEE
Q 001031 1020 ITSKWFGEGEKYVKAVFSLAS------KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVL 1093 (1183)
Q Consensus 1020 L~s~~~GesE~~Ir~lF~~A~------k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVI 1093 (1183)
..+ ...++..+.... ...+.|++|||+|.|. ...+ +.|+..++.. ...+.+|
T Consensus 87 ~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~-----~~~~-------~~L~~~le~~----~~~~~~i 144 (340)
T 1sxj_C 87 DRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-----NAAQ-------NALRRVIERY----TKNTRFC 144 (340)
T ss_dssp CCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-----HHHH-------HHHHHHHHHT----TTTEEEE
T ss_pred ccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-----HHHH-------HHHHHHHhcC----CCCeEEE
Confidence 211 122333322221 1236899999999882 1222 2233333221 2456778
Q ss_pred EecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCC-ChhhHHHHHHHcCCCc
Q 001031 1094 AATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELA-SDVDLEGIANMADGYS 1154 (1183)
Q Consensus 1094 aTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~-~didl~~LA~~TeGyS 1154 (1183)
++||.+..+.+++++|+ .++.+..++.++..+++..++....+. ++..+..++..+.|--
T Consensus 145 l~~n~~~~i~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~ 205 (340)
T 1sxj_C 145 VLANYAHKLTPALLSQC-TRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDM 205 (340)
T ss_dssp EEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCH
T ss_pred EEecCccccchhHHhhc-eeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Confidence 88899999999999999 588899999999999998888654432 4455677777776533
No 103
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.24 E-value=4.6e-11 Score=123.09 Aligned_cols=101 Identities=25% Similarity=0.296 Sum_probs=85.3
Q ss_pred CCccceeccccCCCCceeeecc-------------eeEEccCCccceeecCC-CCCccceEEEEeecCCcceEEEEEecC
Q 001031 131 RIPWARLISQCSQNSHLSMTGA-------------VFTVGHNRQCDLYLKDP-SISKNLCRLRRIENGGPSGALLEITGG 196 (1183)
Q Consensus 131 ~~pW~rL~s~~~~~p~~~i~~~-------------~~t~G~~~~cd~~l~d~-~~s~~~c~l~~~~~~g~~~a~le~~~~ 196 (1183)
...|++|.-..-..+...+.-. .|+|||+..||+.|+|+ .+|..||+|...+ +|. .+|+|.|+
T Consensus 30 ~~~~~~L~v~~G~~~g~~~~l~~~~v~~~~~~~~~~~~IGR~~~~di~l~d~~~vSr~Ha~I~~~~-~g~--~~l~DlS~ 106 (164)
T 1g3g_A 30 ENIVCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGE-DGN--LLLNDIST 106 (164)
T ss_dssp SSCCEEEECSSSSSCCEEECCCHHHHHHCSSSCCEEEEEESSSSSSEECCCCTTTTSSCEEEEECS-TTC--EEEEECCS
T ss_pred CCccEEEEEecCCCCCeEEEeccccccccccccCCcEEECCCCCCCEEeCCcCCcChhHEEEEECC-CCC--EEEEECCC
Confidence 4479999988877776555543 89999999999999998 5999999999742 444 88999999
Q ss_pred CceEEEcCeecCCCceEEeeCCCEEEEccC---CCeeEEeee
Q 001031 197 KGEVEVNGNVHPKDSQVVLRGGDELVFSPS---GKHSYIFQQ 235 (1183)
Q Consensus 197 ~G~v~vNg~~~~k~~~~~L~~gDev~f~~~---~~~ayifq~ 235 (1183)
||| +|||+++.++..+.|+.||+|.|+.. ....|+|..
T Consensus 107 NGT-~vNg~~i~~~~~~~L~~GD~I~iG~~~~~~~~~f~~~~ 147 (164)
T 1g3g_A 107 NGT-WLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFI 147 (164)
T ss_dssp SCE-EETTEEECTTEEEECCTTCEEEESCSSTTSCEEEEEEE
T ss_pred CCe-EECCEEcCCCCceEcCCCCEEEECCCCCCCcEEEEEEe
Confidence 999 79999999999999999999999987 345788774
No 104
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.24 E-value=2.2e-11 Score=121.99 Aligned_cols=101 Identities=19% Similarity=0.198 Sum_probs=85.2
Q ss_pred CCccceeccccCCCCceeee-cceeEEccCCccceeecCCC----CCccceEEEEeecCCcceEEEEEe-cCCceEEEcC
Q 001031 131 RIPWARLISQCSQNSHLSMT-GAVFTVGHNRQCDLYLKDPS----ISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNG 204 (1183)
Q Consensus 131 ~~pW~rL~s~~~~~p~~~i~-~~~~t~G~~~~cd~~l~d~~----~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg 204 (1183)
..+|+ |.........+.+. ...|+|||+..||+.|.|+. +|..||+|...+ +|. ++|+|. |+||| ||||
T Consensus 7 ~~~w~-l~~~G~~~~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~-~g~--~~l~Dl~S~NGT-~vNg 81 (138)
T 2pie_A 7 GRSWC-LRRVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNP-EGQ--WTIMDNKSLNGV-WLNR 81 (138)
T ss_dssp CEEEE-EEETTCSSCBEEECTTCCEEEESSSSSSEECCCSSCTTSSCSSCEEEEECT-TSC--EEEEECSCSSCE-EETT
T ss_pred CccEE-EEEeCCCCCEEEecCCCeEEECCCCCCCEEeCCCCcCCCCChhHeEEEEcC-CCc--EEEEECCCCCCe-EECC
Confidence 34896 77777677788887 78899999999999999999 999999998742 444 889998 89999 7999
Q ss_pred eecCCCceEEeeCCCEEEEccC----CCeeEEeeec
Q 001031 205 NVHPKDSQVVLRGGDELVFSPS----GKHSYIFQQL 236 (1183)
Q Consensus 205 ~~~~k~~~~~L~~gDev~f~~~----~~~ayifq~l 236 (1183)
+++.++..+.|+.||+|.|+.. ....|.|+..
T Consensus 82 ~~l~~~~~~~L~~GD~I~lG~~~~~~~~~~f~~~~~ 117 (138)
T 2pie_A 82 ARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVT 117 (138)
T ss_dssp EECCTTCCEECCTTCEEEESCCCTTCSSCSEEEEEE
T ss_pred EEcCCCCcEECCCCCEEEECCCCCCCceEEEEEEec
Confidence 9999999999999999999985 3356777654
No 105
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.24 E-value=3.1e-10 Score=128.50 Aligned_cols=173 Identities=15% Similarity=0.123 Sum_probs=118.9
Q ss_pred cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc----------------------
Q 001031 954 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---------------------- 1011 (1183)
Q Consensus 954 le~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p---------------------- 1011 (1183)
+++..+.+...+.. .+.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 7 ~~~~~~~l~~~i~~-------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~ 73 (334)
T 1a5t_A 7 LRPDFEKLVASYQA-------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTH 73 (334)
T ss_dssp GHHHHHHHHHHHHT-------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHc-------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 45666677666542 2345679999999999999999999998542
Q ss_pred --EEEEecCccccccccchHHHHHHHHHHHhcc----CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCccc
Q 001031 1012 --FINISMSSITSKWFGEGEKYVKAVFSLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTK 1085 (1183)
Q Consensus 1012 --fi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~----~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k 1085 (1183)
++.++...- + -......++.++..+... ...|++|||+|.|. ....+.|+..++.
T Consensus 74 ~d~~~~~~~~~-~--~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~------------~~a~naLLk~lEe---- 134 (334)
T 1a5t_A 74 PDYYTLAPEKG-K--NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT------------DAAANALLKTLEE---- 134 (334)
T ss_dssp TTEEEECCCTT-C--SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC------------HHHHHHHHHHHTS----
T ss_pred CCEEEEecccc-C--CCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC------------HHHHHHHHHHhcC----
Confidence 333332100 0 011234567777766543 35899999999982 1223555666654
Q ss_pred CCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHH
Q 001031 1086 DKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVT 1164 (1183)
Q Consensus 1086 ~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~ 1164 (1183)
.+.++++|.+|+.++.+.+++++|+ .++.++.|+.++..++++..+ ..++..+..++..+.|.. +.+.++++.
T Consensus 135 p~~~~~~Il~t~~~~~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~----~~~~~~~~~l~~~s~G~~-r~a~~~l~~ 207 (334)
T 1a5t_A 135 PPAETWFFLATREPERLLATLRSRC-RLHYLAPPPEQYAVTWLSREV----TMSQDALLAALRLSAGSP-GAALALFQG 207 (334)
T ss_dssp CCTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHC----CCCHHHHHHHHHHTTTCH-HHHHHTTSS
T ss_pred CCCCeEEEEEeCChHhCcHHHhhcc-eeeeCCCCCHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCH-HHHHHHhcc
Confidence 3356888888999999999999999 689999999999998888765 234556778888887744 444444433
No 106
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.23 E-value=7.7e-13 Score=161.24 Aligned_cols=211 Identities=18% Similarity=0.221 Sum_probs=123.1
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe----cCccccccc
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINIS----MSSITSKWF 1025 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~----~s~L~s~~~ 1025 (1183)
.|.|++.++..+...+.. ..+..... ...+...+|||+||||||||+||+++|+.++..++... +..+.....
T Consensus 296 ~I~G~e~vk~al~~~l~~--g~~~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 296 SIYGHWELKEALALALFG--GVPKVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp TTSCCHHHHHHHTTTTTC--CCCEETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred hhcChHHHHHHHHHHHhC--CCcccccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 578999988777432221 10000000 11223347999999999999999999999876655432 222222211
Q ss_pred cchH----HHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhc--CCcccCCCCEEEEEecCCC
Q 001031 1026 GEGE----KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWD--GLRTKDKERVLVLAATNRP 1099 (1183)
Q Consensus 1026 GesE----~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ld--gl~~k~~~~VlVIaTTN~p 1099 (1183)
.... ......+..| ..+||||||||.+ ++..+..+..++++....+. |.....+.++.||||||+.
T Consensus 373 ~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l-----~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~ 444 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLA---DGGIAVIDEIDKM-----RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPK 444 (595)
T ss_dssp SGGGTSSCSEEECHHHHH---SSSEECCTTTTCC-----CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCT
T ss_pred eccccccccccCCeeEec---CCCcEEeehhhhC-----CHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCc
Confidence 1100 0001122333 3489999999987 33333333333222111111 3222335678999999987
Q ss_pred C-------------CCcHHHHhccCc-EEEecCCCHHHHHHHHHHHHhhcc--------------------------CCC
Q 001031 1100 F-------------DLDEAVVRRLPR-RLMVNLPDAPNREKIIRVILAKEE--------------------------LAS 1139 (1183)
Q Consensus 1100 ~-------------~Ld~aLlrRFd~-vI~I~lPd~eeR~eILk~iL~k~~--------------------------l~~ 1139 (1183)
. .|++++++||+. .+..+.|+.+ ...|.++++.... ..+
T Consensus 445 ~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls 523 (595)
T 3f9v_A 445 FGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKIT 523 (595)
T ss_dssp TCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCC
T ss_pred CCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCC
Confidence 6 899999999975 5556777777 8888888775421 111
Q ss_pred hhhHHHHHHH--------------cCCCcHHHHHHHHHHHHHHhHHH
Q 001031 1140 DVDLEGIANM--------------ADGYSGSDLKNLCVTAAHCPIRE 1172 (1183)
Q Consensus 1140 didl~~LA~~--------------TeGySg~DL~~L~~~Aa~~Aire 1172 (1183)
+...+.|... .-+.+.+.+..+++.|...|.-+
T Consensus 524 ~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~ 570 (595)
T 3f9v_A 524 SEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMA 570 (595)
T ss_dssp CCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHh
Confidence 2223344443 24678889999998887766433
No 107
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.23 E-value=5.1e-12 Score=125.93 Aligned_cols=132 Identities=13% Similarity=0.155 Sum_probs=86.1
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchH
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGE 1029 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~GesE 1029 (1183)
+++|.+..++.+.+.+.... ....+|||+||||||||++|++|++..+ +|+.++|..+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~------------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~----- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA------------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM----- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH------------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-----
T ss_pred CceeCCHHHHHHHHHHHHHh------------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-----
Confidence 57788888888888775321 1235799999999999999999999888 99999998765433
Q ss_pred HHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCC-CC----CcH
Q 001031 1030 KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP-FD----LDE 1104 (1183)
Q Consensus 1030 ~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p-~~----Ld~ 1104 (1183)
...+|..+. .++|||||||.+ +...+..+.++++ .. .+.++.+|+|||.. .. +.+
T Consensus 67 --~~~~~~~a~---~~~l~lDei~~l-----~~~~q~~Ll~~l~----~~------~~~~~~iI~~tn~~~~~~~~~~~~ 126 (143)
T 3co5_A 67 --PMELLQKAE---GGVLYVGDIAQY-----SRNIQTGITFIIG----KA------ERCRVRVIASCSYAAGSDGISCEE 126 (143)
T ss_dssp --HHHHHHHTT---TSEEEEEECTTC-----CHHHHHHHHHHHH----HH------TTTTCEEEEEEEECTTTC--CHHH
T ss_pred --hhhHHHhCC---CCeEEEeChHHC-----CHHHHHHHHHHHH----hC------CCCCEEEEEecCCCHHHHHhCccH
Confidence 455666554 489999999988 2222222222222 11 13567888888753 33 455
Q ss_pred HHHhccCcEEEecCCC
Q 001031 1105 AVVRRLPRRLMVNLPD 1120 (1183)
Q Consensus 1105 aLlrRFd~vI~I~lPd 1120 (1183)
.+..||. .+.+.+|.
T Consensus 127 ~L~~rl~-~~~i~lPp 141 (143)
T 3co5_A 127 KLAGLFS-ESVVRIPP 141 (143)
T ss_dssp HHHHHSS-SEEEEECC
T ss_pred HHHHHhc-CcEEeCCC
Confidence 6677763 34454543
No 108
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.22 E-value=1.8e-11 Score=131.72 Aligned_cols=72 Identities=25% Similarity=0.230 Sum_probs=51.6
Q ss_pred ccccccccccchhhHHHHHHhhhhhhccccc-cccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecC
Q 001031 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNN-FAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSL 528 (1183)
Q Consensus 450 ~vsfd~FPYylse~tk~~L~~~~~~hLk~~~-~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs~ 528 (1183)
+++|+++--+ ++.|..|...... +++++ |..++ ....+.|||.||+| ....+||||||++++.+++.++..
T Consensus 2 ~~~~~~i~G~--~~~~~~l~~~~~~-~~~~~~~~~~g---~~~~~~vll~G~~G--tGKT~la~~la~~~~~~~~~~~~~ 73 (262)
T 2qz4_A 2 GVSFKDVAGM--HEAKLEVREFVDY-LKSPERFLQLG---AKVPKGALLLGPPG--CGKTLLAKAVATEAQVPFLAMAGA 73 (262)
T ss_dssp CCCTTSSCSC--HHHHHHHHHHHHH-HHCCC---------CCCCCEEEEESCTT--SSHHHHHHHHHHHHTCCEEEEETT
T ss_pred CCCHHHhCCH--HHHHHHHHHHHHH-HHCHHHHHHcC---CCCCceEEEECCCC--CCHHHHHHHHHHHhCCCEEEechH
Confidence 5789998766 8888888776653 44433 32332 23456799999999 789999999999998888777654
Q ss_pred C
Q 001031 529 L 529 (1183)
Q Consensus 529 ~ 529 (1183)
.
T Consensus 74 ~ 74 (262)
T 2qz4_A 74 E 74 (262)
T ss_dssp T
T ss_pred H
Confidence 3
No 109
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.22 E-value=8.2e-12 Score=149.12 Aligned_cols=66 Identities=24% Similarity=0.320 Sum_probs=57.3
Q ss_pred HHHH--HHHHHHhhhhhhhhhccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhh
Q 001031 814 ALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFM 881 (1183)
Q Consensus 814 ALlR--Rferq~e~~Lpd~~gR~~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~ 881 (1183)
+|+| ||++++++++||...|.+|++.|.. ...+ +++++..||..+.||+|+||+.+|..|+.++..
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~ 253 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR 253 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTT
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 7776 8999999999999999999998853 3345 677899999999999999999999999988865
No 110
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.22 E-value=1.2e-11 Score=123.39 Aligned_cols=132 Identities=8% Similarity=0.114 Sum_probs=87.2
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccccc
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFG 1026 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~~G 1026 (1183)
+++|.....+.+.+.+... .....+|||+||||||||++|++|++.. +.+|+ ++|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~------------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL------------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH------------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS---
T ss_pred CceeCCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc---
Confidence 5678888888887766531 1123579999999999999999999987 78999 999876544
Q ss_pred chHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCC-------
Q 001031 1027 EGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRP------- 1099 (1183)
Q Consensus 1027 esE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p------- 1099 (1183)
......|..+. .++|||||||.+- ...+ ..++..+.. ...++.+|+|||.+
T Consensus 66 ---~~~~~~~~~a~---~g~l~ldei~~l~-----~~~q-------~~Ll~~l~~----~~~~~~~I~~t~~~~~~~~~~ 123 (145)
T 3n70_A 66 ---PQLNDFIALAQ---GGTLVLSHPEHLT-----REQQ-------YHLVQLQSQ----EHRPFRLIGIGDTSLVELAAS 123 (145)
T ss_dssp ---SCHHHHHHHHT---TSCEEEECGGGSC-----HHHH-------HHHHHHHHS----SSCSSCEEEEESSCHHHHHHH
T ss_pred ---hhhhcHHHHcC---CcEEEEcChHHCC-----HHHH-------HHHHHHHhh----cCCCEEEEEECCcCHHHHHHc
Confidence 23445566553 4899999999882 1122 223333322 23457888888864
Q ss_pred CCCcHHHHhccCcEEEecCCC
Q 001031 1100 FDLDEAVVRRLPRRLMVNLPD 1120 (1183)
Q Consensus 1100 ~~Ld~aLlrRFd~vI~I~lPd 1120 (1183)
..+.+.+..|+. .+.+.+|.
T Consensus 124 ~~~~~~L~~rl~-~~~i~lPp 143 (145)
T 3n70_A 124 NHIIAELYYCFA-MTQIACLP 143 (145)
T ss_dssp SCCCHHHHHHHH-HHEEECCC
T ss_pred CCCCHHHHHHhc-CCEEeCCC
Confidence 356677777763 34455553
No 111
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.19 E-value=5.9e-11 Score=118.20 Aligned_cols=102 Identities=18% Similarity=0.220 Sum_probs=83.5
Q ss_pred CCCCccceeccccCCC---CceeeecceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcC
Q 001031 129 GSRIPWARLISQCSQN---SHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNG 204 (1183)
Q Consensus 129 ~~~~pW~rL~s~~~~~---p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg 204 (1183)
....|||+|.-..... ..+.+....++|||+..||+.|+|+.+|..||+|.....++. .+|+|. |+||| ||||
T Consensus 19 ~~~~p~g~L~v~~g~~~~g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~i~~~~~~~~--~~l~Dl~S~NGT-~vNg 95 (132)
T 3va4_A 19 SHMEPIGQLRLFSGTHGPERDFPLYLGKNVVGRSPDCSVALPFPSISKQHAVIEISAWNKA--PILQDCGSLNGT-QIVK 95 (132)
T ss_dssp -CCCCSEEEEECCBTTBSCEEEEECSEEEEEESSTTSSEECCCTTSCTTCEEEEECSTTSC--CEEEECSCSSCE-EETT
T ss_pred ccCCCcEEEEEEeCCCCCceEEEECCCCEEEccCCCCCEEeCCCCcChhHEEEEEEcCCCE--EEEEECCCCCCe-EECC
Confidence 3456999999876544 367788889999999999999999999999999997644554 678888 77999 7999
Q ss_pred ee--cCCCceEEeeCCCEEEEccCCCeeEEeeec
Q 001031 205 NV--HPKDSQVVLRGGDELVFSPSGKHSYIFQQL 236 (1183)
Q Consensus 205 ~~--~~k~~~~~L~~gDev~f~~~~~~ayifq~l 236 (1183)
++ +.++..+.|+.||+|.|+. ..+.|..+
T Consensus 96 ~~i~l~~~~~~~L~~GD~I~lG~---~~l~f~~~ 126 (132)
T 3va4_A 96 PPRVLPPGVSHRLRDQELILFAD---FPCQYHRL 126 (132)
T ss_dssp TTEEECTTCCEECCTTCEEEETT---EEEEEEEC
T ss_pred EEcccCCCCEEECCCCCEEEECC---EEEEEEEC
Confidence 98 6888999999999999964 45566643
No 112
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.16 E-value=1.1e-11 Score=134.68 Aligned_cols=74 Identities=23% Similarity=0.301 Sum_probs=52.2
Q ss_pred cCCCccccccccccccchhhHHHHHHhhhhhhcccccc-ccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeE
Q 001031 444 LGPENIEVSFESFPYYLSDITKNVLIASTYVHLKCNNF-AKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARL 522 (1183)
Q Consensus 444 ~~~~~~~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~-~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~L 522 (1183)
++.+...++|+++-.+ +..+..|..... .+++++. .+++. ...+.|||.||+| ....+||||||++++.++
T Consensus 1 i~~~~~~~~~~~i~G~--~~~~~~l~~~~~-~~~~~~~~~~~~~---~~~~~vll~G~~G--tGKT~la~~la~~~~~~~ 72 (268)
T 2r62_A 1 INAEKPNVRFKDMAGN--EEAKEEVVEIVD-FLKYPERYANLGA---KIPKGVLLVGPPG--TGKTLLAKAVAGEAHVPF 72 (268)
T ss_dssp CCCCCCCCCSTTSSSC--TTTHHHHHHHHH-HHHCHHHHHHHSC---CCCSCCCCBCSSC--SSHHHHHHHHHHHHTCCC
T ss_pred CCccCCCCCHHHhCCc--HHHHHHHHHHHH-HHHChHHHHHCCC---CCCceEEEECCCC--CcHHHHHHHHHHHhCCCE
Confidence 3567778999998766 788888877654 3555432 22322 2234599999999 789999999999887655
Q ss_pred EEE
Q 001031 523 LIV 525 (1183)
Q Consensus 523 Lil 525 (1183)
+.+
T Consensus 73 ~~v 75 (268)
T 2r62_A 73 FSM 75 (268)
T ss_dssp CCC
T ss_pred EEe
Confidence 433
No 113
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.15 E-value=6.5e-11 Score=123.93 Aligned_cols=101 Identities=20% Similarity=0.296 Sum_probs=78.1
Q ss_pred ccceeccccCC--CCceeeecce--eEEccCCccceeecCCCCCccceEEEEee-cCCc----------ceEEEEEecCC
Q 001031 133 PWARLISQCSQ--NSHLSMTGAV--FTVGHNRQCDLYLKDPSISKNLCRLRRIE-NGGP----------SGALLEITGGK 197 (1183)
Q Consensus 133 pW~rL~s~~~~--~p~~~i~~~~--~t~G~~~~cd~~l~d~~~s~~~c~l~~~~-~~g~----------~~a~le~~~~~ 197 (1183)
.|..|.+.... .+.+.+.... |+|||+..||+.|+|+.+|..||.|.... ..|. ...+|+|.|+|
T Consensus 28 ~~l~L~~~~~~~~~~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~DlStN 107 (182)
T 1qu5_A 28 RFLTLKPLPDSIIQESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTN 107 (182)
T ss_dssp CCEEECCCTTSSSCSCCCBTTCCSSEEESSSTTSSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCCSSS
T ss_pred cEEEEEeCCCCCcceEEEEcCCCceEEECCCCCCCEEECCCCcChHHeEEEEecCccccccccccccccceEEEEECCcC
Confidence 44444444322 3466777655 99999999999999999999999999763 1121 45899999999
Q ss_pred ceEEEcCeecCCCceEEeeCCCEEEEccC--CCeeEEee
Q 001031 198 GEVEVNGNVHPKDSQVVLRGGDELVFSPS--GKHSYIFQ 234 (1183)
Q Consensus 198 G~v~vNg~~~~k~~~~~L~~gDev~f~~~--~~~ayifq 234 (1183)
|| ||||+++.++..++|+.||+|.|+.. |...++|.
T Consensus 108 GT-~VNg~ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f~ 145 (182)
T 1qu5_A 108 VS-YLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFK 145 (182)
T ss_dssp CC-EETTEECCSSEEEECCTTBCCEEEEEGGGTEEEECC
T ss_pred Ce-EECCEEcCCCcceEcCCCCEEEEEEcCCCCEEEEEE
Confidence 99 79999999999999999999999433 44455554
No 114
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.12 E-value=1.9e-10 Score=111.90 Aligned_cols=93 Identities=22% Similarity=0.269 Sum_probs=76.6
Q ss_pred CCCccceeccccCCC--Cceeeec-ceeEEccC-CccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcC
Q 001031 130 SRIPWARLISQCSQN--SHLSMTG-AVFTVGHN-RQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNG 204 (1183)
Q Consensus 130 ~~~pW~rL~s~~~~~--p~~~i~~-~~~t~G~~-~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg 204 (1183)
...||.+|.-..-.. ..+.+.. ..|+|||. ..||+.|+|+.+|..||+|... ++. ++|+|. +.||| +|||
T Consensus 8 ~~~p~l~L~v~~g~~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~--~~~--~~l~Dl~S~nGT-~vng 82 (118)
T 1uht_A 8 MVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESD--SGN--WVIQDLGSSNGT-LLNS 82 (118)
T ss_dssp CCSCEEEEEESSSTTTTCBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEEC--SSS--EEEECCCCSSCC-EESS
T ss_pred CCCCeEEEEEEeCCCCCcEEEECCCCEEEEcCCCCCCCEEeCCCCCchHHeEEEEE--CCE--EEEEECCCCCCe-EECC
Confidence 345788887754222 2556665 68999999 8999999999999999999975 333 899999 68999 7999
Q ss_pred eecCCCceEEeeCCCEEEEccCC
Q 001031 205 NVHPKDSQVVLRGGDELVFSPSG 227 (1183)
Q Consensus 205 ~~~~k~~~~~L~~gDev~f~~~~ 227 (1183)
+++.++..+.|+.||+|.|+...
T Consensus 83 ~~l~~~~~~~L~~gd~i~lG~~~ 105 (118)
T 1uht_A 83 NALDPETSVNLGDGDVIKLGEYT 105 (118)
T ss_dssp SBCCTTCEEECCTTEEEEETTTE
T ss_pred EECCCCCeEEcCCCCEEEECCeE
Confidence 99999999999999999997653
No 115
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.09 E-value=2.6e-09 Score=120.05 Aligned_cols=142 Identities=13% Similarity=0.180 Sum_probs=102.3
Q ss_pred CcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh------CCcEEEEecCcccccccc
Q 001031 953 ALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA------GANFINISMSSITSKWFG 1026 (1183)
Q Consensus 953 Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL------g~pfi~I~~s~L~s~~~G 1026 (1183)
|++++.+.|...+.. .+ .+.+||+||||+|||++|+++|+.+ ...++.++... . .
T Consensus 1 g~~~~~~~L~~~i~~-------------~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~--~ 61 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-------------SE-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--N 61 (305)
T ss_dssp ---CHHHHHHHHHHT-------------CS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--C
T ss_pred ChHHHHHHHHHHHHC-------------CC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C--C
Confidence 456677777776652 12 3589999999999999999999874 34677776542 0 1
Q ss_pred chHHHHHHHHHHHhccC----CeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCC
Q 001031 1027 EGEKYVKAVFSLASKIA----PSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDL 1102 (1183)
Q Consensus 1027 esE~~Ir~lF~~A~k~~----PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~L 1102 (1183)
.....++.++..+...+ ..|+||||+|.|- ....+.|+..++. ++..+++|.+|+.+..+
T Consensus 62 ~~id~ir~li~~~~~~p~~~~~kvviIdead~lt------------~~a~naLLk~LEe----p~~~t~fIl~t~~~~kl 125 (305)
T 2gno_A 62 IGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT------------QQAANAFLKALEE----PPEYAVIVLNTRRWHYL 125 (305)
T ss_dssp BCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC------------HHHHHHTHHHHHS----CCTTEEEEEEESCGGGS
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEeccHHHhC------------HHHHHHHHHHHhC----CCCCeEEEEEECChHhC
Confidence 22345777777776433 3699999999982 1223455555554 33567888888889999
Q ss_pred cHHHHhccCcEEEecCCCHHHHHHHHHHHH
Q 001031 1103 DEAVVRRLPRRLMVNLPDAPNREKIIRVIL 1132 (1183)
Q Consensus 1103 d~aLlrRFd~vI~I~lPd~eeR~eILk~iL 1132 (1183)
.+++++| ++.+..|+.++..++++..+
T Consensus 126 ~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 126 LPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp CHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred hHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 9999999 79999999999999888876
No 116
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.07 E-value=3.1e-10 Score=116.22 Aligned_cols=100 Identities=20% Similarity=0.295 Sum_probs=76.7
Q ss_pred cceeccccC--CCCceeeecce--eEEccCCccceeecCCCCCccceEEEEee-cCCc----------ceEEEEEecCCc
Q 001031 134 WARLISQCS--QNSHLSMTGAV--FTVGHNRQCDLYLKDPSISKNLCRLRRIE-NGGP----------SGALLEITGGKG 198 (1183)
Q Consensus 134 W~rL~s~~~--~~p~~~i~~~~--~t~G~~~~cd~~l~d~~~s~~~c~l~~~~-~~g~----------~~a~le~~~~~G 198 (1183)
|=.|.+... ....+.|.... |+|||+..||+.|+|+.+|..||+|.... ..|. ...+|+|.|+||
T Consensus 5 ~l~L~p~~~~~~~~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~DlStNG 84 (158)
T 1dmz_A 5 FLTLKPLPDSIIQESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHTGTNV 84 (158)
T ss_dssp CEEEEECTTSSCCCCEEETTSCSCEEEESSTTSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEECSTTC
T ss_pred EEEEEeCCCCccceEEEEcCCCceEEECCCCCCCEEeCCCCcChHHeEEEEecCccccccccccccccccEEEEECCcCC
Confidence 444445432 23466776655 99999999999999999999999999754 1121 357999999999
Q ss_pred eEEEcCeecCCCceEEeeCCCEEEEccC--CCeeEEee
Q 001031 199 EVEVNGNVHPKDSQVVLRGGDELVFSPS--GKHSYIFQ 234 (1183)
Q Consensus 199 ~v~vNg~~~~k~~~~~L~~gDev~f~~~--~~~ayifq 234 (1183)
| ||||+++.++..+.|+.||+|.|+.. |+..+.|.
T Consensus 85 T-~VNg~ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f~ 121 (158)
T 1dmz_A 85 S-YLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFK 121 (158)
T ss_dssp C-EETTEECCSSEEEECCSSCCEESCCCTTTTCCCCEE
T ss_pred e-EECCEEcCCCceEEcCCCCEEEEeecCCCCEEEEEE
Confidence 9 79999999999999999999999433 33344444
No 117
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.06 E-value=3.8e-10 Score=112.16 Aligned_cols=84 Identities=19% Similarity=0.293 Sum_probs=68.2
Q ss_pred ceeeecceeEEccCCccceeecCCCCCccceEEEEee-cCCcceEEEEEe------cCCceEEEcCeecCCCceEEeeCC
Q 001031 146 HLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIE-NGGPSGALLEIT------GGKGEVEVNGNVHPKDSQVVLRGG 218 (1183)
Q Consensus 146 ~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~-~~g~~~a~le~~------~~~G~v~vNg~~~~k~~~~~L~~g 218 (1183)
.+.+....|+|||+..||+.|+|+.+|..||+|.... ..|....+|+|. |+||| ||||+++.+ +.|+.|
T Consensus 24 ~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~~~~S~NGT-~vNg~~i~~---~~L~~G 99 (131)
T 3hx1_A 24 EVLLTETFYTIGRSPRADIRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSVNGL-MINGKKVQE---HIIQTG 99 (131)
T ss_dssp EEEECSSEEEEESSTTSSEECCCSSSCTTCEEEEEC------CCEEEEESCTTSCCCSSCE-EETTEEESE---EECCTT
T ss_pred EEEECCCCEEECCCCCCCEEECCCCcChhheEEEEEccCCCceEEEEEECCCCCCCCCCce-EECCEEeEe---EECCCC
Confidence 5677788999999999999999999999999998763 233334889997 89999 799999986 999999
Q ss_pred CEEEEccCCCeeEEeeec
Q 001031 219 DELVFSPSGKHSYIFQQL 236 (1183)
Q Consensus 219 Dev~f~~~~~~ayifq~l 236 (1183)
|+|.|+... ++|..+
T Consensus 100 D~I~iG~~~---~~~~~~ 114 (131)
T 3hx1_A 100 DEIVMGPQV---SVRYEY 114 (131)
T ss_dssp CEEECSTTC---EEEEEE
T ss_pred CEEEECCEE---EEEEEE
Confidence 999997654 455543
No 118
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.06 E-value=3e-10 Score=112.12 Aligned_cols=96 Identities=23% Similarity=0.404 Sum_probs=79.0
Q ss_pred CCccceeccccC---CCCceeeecceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCee
Q 001031 131 RIPWARLISQCS---QNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNV 206 (1183)
Q Consensus 131 ~~pW~rL~s~~~---~~p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~ 206 (1183)
..||++|+-... .-..+.+....|+|||+..||+.|.|+.+|..||+|... ++. ++|+|. |.||| +|||+.
T Consensus 9 ~~~~~~L~v~~~~~~~g~~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~--~~~--~~l~Dl~S~nGt-~vNg~~ 83 (128)
T 1r21_A 9 MWPTRRLVTIKRSGVDGPHFPLSLSTCLFGRGIECDIRIQLPVVSKQHCKIEIH--EQE--AILHNFSSTNPT-QVNGSV 83 (128)
T ss_dssp CCCCEEEEEEEETTEEEEEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEEC--SSC--EEECCCCSSSCC-EETTEE
T ss_pred CCCceEEEEEeCCCCCceEEEECCCCEEECCCCCCCEEECCCCCChhHEEEEEE--CCE--EEEEECCCCCCE-EECCEE
Confidence 347888887542 223577778999999999999999999999999999975 333 889999 57999 799999
Q ss_pred cCCCceEEeeCCCEEEEccCCCeeEEeeec
Q 001031 207 HPKDSQVVLRGGDELVFSPSGKHSYIFQQL 236 (1183)
Q Consensus 207 ~~k~~~~~L~~gDev~f~~~~~~ayifq~l 236 (1183)
+.+ .+.|+.||+|.|+ ...|.|...
T Consensus 84 i~~--~~~L~~Gd~i~iG---~~~~~~~~~ 108 (128)
T 1r21_A 84 IDE--PVRLKHGDVITII---DRSFRYENE 108 (128)
T ss_dssp CSS--CEECCTTEEEECS---SCEEEEEEC
T ss_pred CCC--cEEcCCCCEEEEC---CEEEEEEeC
Confidence 984 7899999999996 457777754
No 119
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.05 E-value=1.5e-10 Score=125.15 Aligned_cols=67 Identities=24% Similarity=0.317 Sum_probs=54.1
Q ss_pred HHHH--HHHHHHhhhhhhhhhccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhh
Q 001031 814 ALLS--DWKQQLERDVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 882 (1183)
Q Consensus 814 ALlR--Rferq~e~~Lpd~~gR~~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r 882 (1183)
+++| ||++.+++++|+...|.+|++.|.. ...+ +++++..||..+.||+|+||+.+|..|+.++..+
T Consensus 170 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 170 ALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 239 (254)
T ss_dssp GGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 6666 7888888888888888888887743 2334 5677899999999999999999999999888753
No 120
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.05 E-value=3.9e-10 Score=115.56 Aligned_cols=88 Identities=22% Similarity=0.293 Sum_probs=75.1
Q ss_pred ceeee-cceeEEccCC---------------ccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecC
Q 001031 146 HLSMT-GAVFTVGHNR---------------QCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHP 208 (1183)
Q Consensus 146 ~~~i~-~~~~t~G~~~---------------~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~~~ 208 (1183)
.+.+. +..|+|||+. .||+.|+++.+|..||.|.....++....+|+|. |+||| ||||+++.
T Consensus 49 ~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~~~~VSr~HA~I~~~~~~~~~~~~l~Dl~StNGT-~VNg~ri~ 127 (158)
T 3els_A 49 RYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGT-CLNNVVIP 127 (158)
T ss_dssp EEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCSSCEEEEEEEETTEEEEEEEECSCSSCC-EETTEECC
T ss_pred EEEecCCCceEeccccccccccccccccccccCCEEcCCCCCCcccEEEEEEccCCeeEEEEEeCCCCCcc-EECCEEcC
Confidence 55665 4789999994 5999999999999999998876555556889999 88999 79999999
Q ss_pred CCceEEeeCCCEEEEccCC---CeeEEee
Q 001031 209 KDSQVVLRGGDELVFSPSG---KHSYIFQ 234 (1183)
Q Consensus 209 k~~~~~L~~gDev~f~~~~---~~ayifq 234 (1183)
++..+.|+.||+|.|+.+. ..-++|.
T Consensus 128 ~~~~~~L~~GD~I~~G~s~~~~~~elvF~ 156 (158)
T 3els_A 128 GARYIELRSGDVLTLSEFEEDNDYELIFM 156 (158)
T ss_dssp TTCCEECCTTEEEESSSCGGGCCEEEEEE
T ss_pred CCceEEcCCCCEEEECCCCCCCCEEEEEE
Confidence 9999999999999999875 4666665
No 121
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.05 E-value=7.2e-10 Score=104.75 Aligned_cols=74 Identities=20% Similarity=0.272 Sum_probs=64.5
Q ss_pred CCceeeecceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecCCCceEEeeCCCEEE
Q 001031 144 NSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELV 222 (1183)
Q Consensus 144 ~p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~~~k~~~~~L~~gDev~ 222 (1183)
-..+.+....++|||+..||+.|+|+.+|..||+|... ++. .+|+|. |.||| +|||+++. .+.|+.||+|.
T Consensus 15 g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~--~~~--~~l~Dl~S~nGt-~vng~~i~---~~~L~~gd~i~ 86 (100)
T 3po8_A 15 GRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWD--GQV--ALLADLNSTNGT-TVNNAPVQ---EWQLADGDVIR 86 (100)
T ss_dssp CCEEECCSEEEEEESSTTCSEECCCTTSCSSCEEEEEC--SSC--EEEEECSCSSCC-EETTEECS---EEECCTTCEEE
T ss_pred CcEEEECCCCEEEeCCCCCCEECCCCCcChhhCEEEEe--CCE--EEEEECCCCCCE-EECCEECc---eEECCCCCEEE
Confidence 34567778889999999999999999999999999974 333 799999 67999 79999997 68999999999
Q ss_pred Ecc
Q 001031 223 FSP 225 (1183)
Q Consensus 223 f~~ 225 (1183)
|+.
T Consensus 87 iG~ 89 (100)
T 3po8_A 87 LGH 89 (100)
T ss_dssp ETT
T ss_pred ECC
Confidence 975
No 122
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.03 E-value=3.5e-09 Score=121.01 Aligned_cols=206 Identities=16% Similarity=0.112 Sum_probs=127.7
Q ss_pred cccccCcHHHHHHHHHHH-HcccCChhhhhcCCCCCCCceEEE--EcCCCChHHHHHHHHHHHh---------CCcEEEE
Q 001031 948 FDDIGALENVKDTLKELV-MLPLQRPELFCKGQLTKPCKGILL--FGPPGTGKTMLAKAVATEA---------GANFINI 1015 (1183)
Q Consensus 948 fdDI~Gle~vk~~L~e~V-~lpl~~~elf~k~~l~kP~~gVLL--~GPPGTGKT~LAkAIA~eL---------g~pfi~I 1015 (1183)
.++++|.+...+.|.+.+ ..... + ....+..++| +||+|+|||+|++++++.+ ++.++.+
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~-------~-~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLS-------G-AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHT-------S-SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCChHHHHHHHHHHHhHHHhc-------C-CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 357899999888888876 42111 1 0023357999 9999999999999999876 5677888
Q ss_pred ecCcccc------cc---c-------cc-hHHHHHHHHHHHh-ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHH
Q 001031 1016 SMSSITS------KW---F-------GE-GEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMV 1077 (1183)
Q Consensus 1016 ~~s~L~s------~~---~-------Ge-sE~~Ir~lF~~A~-k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~ 1077 (1183)
++..... .. + +. .......+..... ...|.||+|||+|.+..... ...+.+ ..++.
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--~~~~~l----~~l~~ 166 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--IAAEDL----YTLLR 166 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--SCHHHH----HHHHT
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--cchHHH----HHHHH
Confidence 8643111 00 0 11 1122223332222 24578999999998842210 112222 22222
Q ss_pred hhcCCcccCC--CCEEEEEecCCCC---CCc---HHHHhccCcEEEecCCCHHHHHHHHHHHHhhc---cCCChhhHHHH
Q 001031 1078 NWDGLRTKDK--ERVLVLAATNRPF---DLD---EAVVRRLPRRLMVNLPDAPNREKIIRVILAKE---ELASDVDLEGI 1146 (1183)
Q Consensus 1078 ~Ldgl~~k~~--~~VlVIaTTN~p~---~Ld---~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~---~l~~didl~~L 1146 (1183)
.+..... .. .++.+|++++.+. .++ +.+.++|...+.++.++.++..++++..+... ...++..+..+
T Consensus 167 ~~~~~~~-~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i 245 (412)
T 1w5s_A 167 VHEEIPS-RDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELI 245 (412)
T ss_dssp HHHHSCC-TTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHH
T ss_pred HHHhccc-CCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 2222210 12 5788888887654 334 56667887779999999999999998876532 12345567888
Q ss_pred HHHcC------CCcHHHHHHHHHHHHHHh
Q 001031 1147 ANMAD------GYSGSDLKNLCVTAAHCP 1169 (1183)
Q Consensus 1147 A~~Te------GySg~DL~~L~~~Aa~~A 1169 (1183)
+..+. | .+..+..++..|+..+
T Consensus 246 ~~~~~~~~~~~G-~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 246 SDVYGEDKGGDG-SARRAIVALKMACEMA 273 (412)
T ss_dssp HHHHCGGGTSCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCC-cHHHHHHHHHHHHHHH
Confidence 88888 6 4567778887776544
No 123
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.02 E-value=1.3e-09 Score=105.77 Aligned_cols=84 Identities=21% Similarity=0.316 Sum_probs=70.5
Q ss_pred CCCceeeecceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecCCCceEEeeCCCEE
Q 001031 143 QNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDEL 221 (1183)
Q Consensus 143 ~~p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~~~k~~~~~L~~gDev 221 (1183)
.-..+.+....++|||+..||+.|+|+.+|..||+|... ++. ++|+|. |.||| +|||+.+. .+.|+.||+|
T Consensus 22 ~g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~--~~~--~~l~Dl~S~nGt-~vng~~i~---~~~L~~gd~i 93 (115)
T 2xt9_B 22 AGSRFLLDQPTTSAGRHPDSDIFLDDVTVSRRHAEFRLE--GGE--FQVVDVGSLNGT-YVNREPVD---SAVLANGDEV 93 (115)
T ss_dssp TTCEEEECSSEEEEESSTTSSEECCSTTSCSSCEEEEEE--TTE--EEEEECSCSSCE-EETTEECS---EEEECTTCEE
T ss_pred CCeEEEECCCCEEECCCCCCCEEeCCcccChhheEEEEE--CCE--EEEEECCCCCCe-EECCEEcc---eEECCCCCEE
Confidence 345677888899999999999999999999999999975 343 899999 68999 79999997 6899999999
Q ss_pred EEccCCCeeEEeeecC
Q 001031 222 VFSPSGKHSYIFQQLS 237 (1183)
Q Consensus 222 ~f~~~~~~ayifq~l~ 237 (1183)
.|+. ..+.|+..+
T Consensus 94 ~iG~---~~l~~~~~~ 106 (115)
T 2xt9_B 94 QIGK---FRLVFLTGP 106 (115)
T ss_dssp EETT---EEEEEEC--
T ss_pred EECC---EEEEEEeCC
Confidence 9964 567776543
No 124
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.01 E-value=4.2e-10 Score=113.60 Aligned_cols=99 Identities=18% Similarity=0.190 Sum_probs=79.0
Q ss_pred CccceeccccCCCCceeee-cceeEEccCCccceeecCCC----CCccceEEEEeecCCcceEEEEEe-cCCceEEEcCe
Q 001031 132 IPWARLISQCSQNSHLSMT-GAVFTVGHNRQCDLYLKDPS----ISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGN 205 (1183)
Q Consensus 132 ~pW~rL~s~~~~~p~~~i~-~~~~t~G~~~~cd~~l~d~~----~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~ 205 (1183)
..|+-+ ........+.+. ...|+|||+..||+.|.|+. +|..||+|...+ +|. .+|+|. |+||| ||||+
T Consensus 16 ~~w~L~-~~G~~~~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~-~g~--~~l~Dl~S~NGT-~vNg~ 90 (145)
T 2csw_A 16 RSWCLR-RVGMSAGWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNP-EGQ--WTIMDNKSLNGV-WLNRA 90 (145)
T ss_dssp EEEEEC-CTTCSCCBEECCTTCCEEEESSTTSSEECCCSSCGGGSCTTCEEEEECT-TSC--EEEEBSSCSSCE-EESSC
T ss_pred ccEEEE-EeCCCCCeEEeCCCCcEEECCCCCCCEEECCCCcCCCCChhHeEEEEcC-CCe--EEEEECCCCCCe-EECCE
Confidence 378844 444455566664 57899999999999999999 999999999742 344 789995 88999 79999
Q ss_pred ecCCCceEEeeCCCEEEEccC----CCeeEEeee
Q 001031 206 VHPKDSQVVLRGGDELVFSPS----GKHSYIFQQ 235 (1183)
Q Consensus 206 ~~~k~~~~~L~~gDev~f~~~----~~~ayifq~ 235 (1183)
++.++..+.|++||+|.|+.. ....|.|+.
T Consensus 91 ~i~~~~~~~L~~GD~I~iG~~~~~g~~~~f~~~~ 124 (145)
T 2csw_A 91 RLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEV 124 (145)
T ss_dssp BCCBTCCEECCSSCCEEESCCCTTCSSCSCCCCE
T ss_pred ECCCCccEECCCCCEEEECCCCCCCceEEEEEEe
Confidence 999999999999999999985 224455543
No 125
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.01 E-value=7.4e-10 Score=135.17 Aligned_cols=204 Identities=20% Similarity=0.258 Sum_probs=119.0
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCc---EEEEecCccc-
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGAN---FINISMSSIT- 1021 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~p---fi~I~~s~L~- 1021 (1183)
..|++++|++.+++.+...+.. ...+||+||||||||+||++|+..+... .+.+.+....
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~----------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~ 101 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQ----------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE 101 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHT----------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT
T ss_pred cccceEECchhhHhhccccccC----------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc
Confidence 5688999999999888776641 2479999999999999999999987432 2222211100
Q ss_pred -cccc-----cchH-------------------------------------------------HHHHHHHH---------
Q 001031 1022 -SKWF-----GEGE-------------------------------------------------KYVKAVFS--------- 1037 (1183)
Q Consensus 1022 -s~~~-----GesE-------------------------------------------------~~Ir~lF~--------- 1037 (1183)
.... +..+ .....+|.
T Consensus 102 ~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~ 181 (604)
T 3k1j_A 102 NMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQS 181 (604)
T ss_dssp TSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC--
T ss_pred cCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhc
Confidence 0000 0000 00111111
Q ss_pred --------------HHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCC----------cccCCCCEEEE
Q 001031 1038 --------------LASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGL----------RTKDKERVLVL 1093 (1183)
Q Consensus 1038 --------------~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl----------~~k~~~~VlVI 1093 (1183)
......+++|||||++.| ++..+..+.+++++-...+.+. ....+.++.||
T Consensus 182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l-----~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI 256 (604)
T 3k1j_A 182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIATL-----SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLV 256 (604)
T ss_dssp --CCCCGGGGEECCHHHHTTTSEEEETTGGGS-----CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEE
T ss_pred CCccccccccccCceeeecCCCEEEEechhhC-----CHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEE
Confidence 011224679999999987 3333444444443322222221 11123578899
Q ss_pred EecCCC--CCCcHHHHhccC---cEEEecC--C-CHHHHHHHHHHHHhhcc------CCChhhHHHHHHHc---CCC---
Q 001031 1094 AATNRP--FDLDEAVVRRLP---RRLMVNL--P-DAPNREKIIRVILAKEE------LASDVDLEGIANMA---DGY--- 1153 (1183)
Q Consensus 1094 aTTN~p--~~Ld~aLlrRFd---~vI~I~l--P-d~eeR~eILk~iL~k~~------l~~didl~~LA~~T---eGy--- 1153 (1183)
+|||+. +.++++|++||. ..+.++. + ..+....+++.+..... ...+..+..|.... .|.
T Consensus 257 ~atn~~~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~ 336 (604)
T 3k1j_A 257 AAGNLDTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGH 336 (604)
T ss_dssp EEECHHHHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTE
T ss_pred EecCHHHHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccc
Confidence 999986 679999999985 2343322 1 24456666655443211 12344456666543 453
Q ss_pred ---cHHHHHHHHHHHHHHhH
Q 001031 1154 ---SGSDLKNLCVTAAHCPI 1170 (1183)
Q Consensus 1154 ---Sg~DL~~L~~~Aa~~Ai 1170 (1183)
+.++|.++++.|...|.
T Consensus 337 l~~~~R~l~~llr~A~~~A~ 356 (604)
T 3k1j_A 337 LTLRLRDLGGIVRAAGDIAV 356 (604)
T ss_dssp EECCHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHH
Confidence 68999999999876653
No 126
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.00 E-value=2.6e-10 Score=114.33 Aligned_cols=85 Identities=15% Similarity=0.185 Sum_probs=71.2
Q ss_pred ceeeec-ceeEEccCCc-cceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecCCCceEEeeCCCEEE
Q 001031 146 HLSMTG-AVFTVGHNRQ-CDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELV 222 (1183)
Q Consensus 146 ~~~i~~-~~~t~G~~~~-cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~~~k~~~~~L~~gDev~ 222 (1183)
.+.+.. ..|+|||+.. ||+.|.|+.+|..||+|.....++. .+|+|. |+||| ||||+++.++..+.|+.||+|.
T Consensus 48 ~~~l~~~~~~~IGR~~~~~di~l~d~~VSr~Ha~i~~~~~~~~--~~l~Dl~S~NGT-~vNg~~l~~~~~~~L~~gd~i~ 124 (140)
T 2jpe_A 48 KLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKR--VFLIDLNSTHGT-FLGHIRLEPHKPQQIPIDSTVS 124 (140)
T ss_dssp EECCSSCSBCCBSSCTTTSSSCCCCSSSCTTSBEEEEBSSSCC--EEEECCSCSSCE-ESSSCEECSSSCCEECTTCCBB
T ss_pred EEEeCCCCeEEecCCCccCCEEeCCCCcChhheEEEEECCCCc--EEEEECCCCCCe-EECCEECCCCccEECCCCCEEE
Confidence 455555 3599999998 9999999999999999997643344 789997 88999 7999999999999999999999
Q ss_pred EccCCCeeEEee
Q 001031 223 FSPSGKHSYIFQ 234 (1183)
Q Consensus 223 f~~~~~~ayifq 234 (1183)
|+.... .|+|+
T Consensus 125 ~G~~~~-~f~~~ 135 (140)
T 2jpe_A 125 FGASTR-AYTLR 135 (140)
T ss_dssp CSSCCC-CBCCB
T ss_pred ECCceE-EEEEe
Confidence 987654 36554
No 127
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.98 E-value=6.7e-10 Score=147.38 Aligned_cols=153 Identities=20% Similarity=0.235 Sum_probs=106.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHcccCC----------hhhhhc------CCC---------CCCCce--EEEEcCCCC
Q 001031 943 DIGVTFDDIGALENVKDTLKELVMLPLQR----------PELFCK------GQL---------TKPCKG--ILLFGPPGT 995 (1183)
Q Consensus 943 e~~~tfdDI~Gle~vk~~L~e~V~lpl~~----------~elf~k------~~l---------~kP~~g--VLL~GPPGT 995 (1183)
...++|++++|+++.++.+.+.+.+|+.+ ++.|.. .++ .-+|+| +||||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 34579999999999999999999998843 455554 111 113455 999999999
Q ss_pred hHHHHHHHHHHHh---CCcEEEEecCccc------------cccccc----hHHHHHHHHHHHhccCCeEEEEeCCcccc
Q 001031 996 GKTMLAKAVATEA---GANFINISMSSIT------------SKWFGE----GEKYVKAVFSLASKIAPSVVFVDEVDSML 1056 (1183)
Q Consensus 996 GKT~LAkAIA~eL---g~pfi~I~~s~L~------------s~~~Ge----sE~~Ir~lF~~A~k~~PsILfIDEID~Ll 1056 (1183)
|||+||++++.+. |-|.+.++..... .+|+++ .|+.++.+|..|+...|++||+|+|+.|.
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999876 5666666655533 567777 89999999999999999999999999998
Q ss_pred cCCC-----CcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCC
Q 001031 1057 GRRE-----NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1183)
Q Consensus 1057 ~~r~-----~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~ 1098 (1183)
+.+. .........+++++++..++++... .+|.|| +||+
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~--~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ--SNTLLI-FINQ 1217 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHH--TTCEEE-EEEC
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhcc--CCeEEE-Eecc
Confidence 7632 1111245566788888888876543 457777 5554
No 128
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=98.97 E-value=2.1e-09 Score=108.43 Aligned_cols=81 Identities=20% Similarity=0.294 Sum_probs=69.3
Q ss_pred CceeeecceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecCCCceEEeeCCCEEEE
Q 001031 145 SHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELVF 223 (1183)
Q Consensus 145 p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~~~k~~~~~L~~gDev~f 223 (1183)
..+.+....++|||+..||+.|+|+.+|..||+|... ++. ++|+|. |.||| ||||+++. .+.|+.||+|.|
T Consensus 59 ~~~~L~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~--~~~--~~l~DlgS~NGT-~VNg~~i~---~~~L~~GD~I~i 130 (143)
T 2kb3_A 59 ARFLLDQPTTTAGRHPESDIFLDDVTVSRRHAEFRIN--EGE--FEVVDVGSLNGT-YVNREPRN---AQVMQTGDEIQI 130 (143)
T ss_dssp CEEEECSSEEEESSCTTCSBCCCCSSCCSSSEEEEEE--TTE--EEEEESCCSSCC-EETTEECS---EEECCTTEEEEE
T ss_pred eEEEeCCCCeeccCCCCCCEEeCCCCcChhhEEEEEE--CCE--EEEEECCCcCCe-EECCEEcc---eEECCCCCEEEE
Confidence 4566777899999999999999999999999999984 443 889999 68999 79999997 689999999999
Q ss_pred ccCCCeeEEeeec
Q 001031 224 SPSGKHSYIFQQL 236 (1183)
Q Consensus 224 ~~~~~~ayifq~l 236 (1183)
+. ..+.|+..
T Consensus 131 G~---~~l~f~~~ 140 (143)
T 2kb3_A 131 GK---FRLVFLAG 140 (143)
T ss_dssp TT---EEEEEEEC
T ss_pred CC---EEEEEEeC
Confidence 64 56777653
No 129
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.96 E-value=1.3e-09 Score=119.81 Aligned_cols=127 Identities=25% Similarity=0.388 Sum_probs=89.5
Q ss_pred HHHHHHHHhhccCCCCEEEEEcChhhhhcC--------ChhhHHHHHHHHhcCCC-----CEEEEEeccCCCcccccCCC
Q 001031 690 INELFEVALNESKSSPLIVFVKDIEKSLTG--------NNDAYGALKSKLENLPS-----NVVVIGSHTQLDSRKEKSHP 756 (1183)
Q Consensus 690 ~~~l~evl~s~~~~~P~Ilf~~Die~~l~~--------~~~~~~~i~~~L~~L~g-----~vivIgs~~~~d~~k~k~~~ 756 (1183)
+..+|+.... ..|.|+||+|++.+... +.+....+...|..|+| .+++|+++|
T Consensus 121 i~~~~~~~~~---~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~----------- 186 (278)
T 1iy2_A 121 VRDLFETAKR---HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATN----------- 186 (278)
T ss_dssp HHHHHHHHHT---SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEES-----------
T ss_pred HHHHHHHHHh---cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecC-----------
Confidence 3344444432 57889999999886432 23333444444555543 488888888
Q ss_pred CCceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhhcc
Q 001031 757 GGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQS 834 (1183)
Q Consensus 757 ~~~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~ 834 (1183)
.|+.+|+ +++| ||++.+++++|+...|.
T Consensus 187 -------------------~p~~ld~-------------------------------~l~r~~rf~~~i~i~~p~~~~r~ 216 (278)
T 1iy2_A 187 -------------------RPDILDP-------------------------------ALLRPGRFDRQIAIDAPDVKGRE 216 (278)
T ss_dssp -------------------CTTSSCH-------------------------------HHHSTTSSCCEEECCCCCHHHHH
T ss_pred -------------------CchhCCH-------------------------------hHcCCCcCCeEEEeCCcCHHHHH
Confidence 4555554 6766 78888888888888888
Q ss_pred chhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhh
Q 001031 835 NIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 882 (1183)
Q Consensus 835 ~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r 882 (1183)
+|++.|.. ...+ +++++..||..+.||+++||+.+|..|+.++..+
T Consensus 217 ~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~ 263 (278)
T 1iy2_A 217 QILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 263 (278)
T ss_dssp HHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc--cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 88887643 3344 5677899999999999999999999999888653
No 130
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=98.96 E-value=1.1e-09 Score=109.71 Aligned_cols=79 Identities=19% Similarity=0.200 Sum_probs=67.8
Q ss_pred eeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecCC--------CceEEeeCCCEEEE
Q 001031 153 VFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPK--------DSQVVLRGGDELVF 223 (1183)
Q Consensus 153 ~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~~~k--------~~~~~L~~gDev~f 223 (1183)
.|+|||+..||+.|+|+.+|..||+|.....++. .+|+|. |+||| ||||+.+.+ +..+.|+.||+|.|
T Consensus 33 ~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~~~~~--~~l~DlgS~NGT-~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~i 109 (139)
T 1mzk_A 33 PVKLGRVSPSDLALKDSEVSGKHAQITWNSTKFK--WELVDMGSLNGT-LVNSHSISHPDLGSRKWGNPVELASDDIITL 109 (139)
T ss_dssp SEEEESSSSCSEECCCTTSSSEEEEEEEETTTTE--EEEEETTCSSCC-EETTEESSCCCTTTCCCCCCEECCTTEEEEC
T ss_pred eEEeeCCCCCCEEeCCCCCChHHcEEEEECCCCE--EEEEECCCCCCE-EECCEECcCcccccccCCceEECCCCCEEEE
Confidence 7999999999999999999999999997644333 899999 68999 799999995 78999999999999
Q ss_pred ccCCCeeEEeeecC
Q 001031 224 SPSGKHSYIFQQLS 237 (1183)
Q Consensus 224 ~~~~~~ayifq~l~ 237 (1183)
+.. .++|..+.
T Consensus 110 G~~---~~~~~~~~ 120 (139)
T 1mzk_A 110 GTT---TKVYVRIS 120 (139)
T ss_dssp SSS---CEEEEEEE
T ss_pred CCE---EEEEEEcC
Confidence 654 56666554
No 131
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=98.93 E-value=4e-09 Score=108.47 Aligned_cols=82 Identities=21% Similarity=0.288 Sum_probs=69.4
Q ss_pred CceeeecceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecCCCceEEeeCCCEEEE
Q 001031 145 SHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELVF 223 (1183)
Q Consensus 145 p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~~~k~~~~~L~~gDev~f 223 (1183)
..+.+....++|||+..||+.|+|+.+|..||+|... ++. ++|+|. |.||| ||||+++. .+.|+.||+|.|
T Consensus 68 ~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~--~~~--~~l~DlgS~NGT-~VNg~~i~---~~~L~~GD~I~i 139 (162)
T 2kfu_A 68 SRFLLDQAITSAGRHPDSDIFLDDVTVSRRHAEFRLE--NNE--FNVVDVGSLNGT-YVNREPVD---SAVLANGDEVQI 139 (162)
T ss_dssp CEEETTSSEEEEESCSSSSEESTTTSSSSCSEEEEEE--TTE--EEEECCCCSSCE-EETTBCCS---EEECCSSCEEEE
T ss_pred eEEEECCCCEEECCCCCCCEEECCCCcChhhEEEEEE--CCE--EEEEECCCCCCe-EECCEEcc---eEECCCCCEEEE
Confidence 3566677899999999999999999999999999985 443 899999 68999 79999997 589999999999
Q ss_pred ccCCCeeEEeeecC
Q 001031 224 SPSGKHSYIFQQLS 237 (1183)
Q Consensus 224 ~~~~~~ayifq~l~ 237 (1183)
+. ..++|..-+
T Consensus 140 G~---~~l~f~~~~ 150 (162)
T 2kfu_A 140 GK---FRLVFLTGP 150 (162)
T ss_dssp TT---EEEEEECSC
T ss_pred CC---EEEEEEeCC
Confidence 64 567776433
No 132
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=98.91 E-value=2.7e-09 Score=113.09 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=70.2
Q ss_pred ceeee-cceeEEccCC---------------ccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecC
Q 001031 146 HLSMT-GAVFTVGHNR---------------QCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHP 208 (1183)
Q Consensus 146 ~~~i~-~~~~t~G~~~---------------~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~~~ 208 (1183)
.+.|. .+.|+|||+. .||+.|+++.+|..||.|.....++....+|+|. |+||| ||||++|.
T Consensus 96 ~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~~~~~~~l~DLgStNGT-fVNG~rI~ 174 (205)
T 3elv_A 96 RYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGT-CLNNVVIP 174 (205)
T ss_dssp EEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEETTEEEEEEEECSCSSCC-EETTEECC
T ss_pred EEEecCCCceeecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCCCceeEEEEeCCCCCCC-eECCEECC
Confidence 56664 5899999984 4999999999999999998665555555788997 88999 79999999
Q ss_pred CCceEEeeCCCEEEEccCC
Q 001031 209 KDSQVVLRGGDELVFSPSG 227 (1183)
Q Consensus 209 k~~~~~L~~gDev~f~~~~ 227 (1183)
++..+.|+.||+|.|+.+.
T Consensus 175 ~~~~~~L~~GD~I~fG~s~ 193 (205)
T 3elv_A 175 GARYIELRSGDVLTLSEFE 193 (205)
T ss_dssp BTSCEECCTTCEEESSSSG
T ss_pred CCceeECCCCCEEEECCCC
Confidence 9999999999999999875
No 133
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=98.88 E-value=5.5e-09 Score=99.80 Aligned_cols=81 Identities=19% Similarity=0.299 Sum_probs=66.5
Q ss_pred ceeeec-ceeEEccCC-ccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecCCCceEEeeCCCEEE
Q 001031 146 HLSMTG-AVFTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELV 222 (1183)
Q Consensus 146 ~~~i~~-~~~t~G~~~-~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~~~k~~~~~L~~gDev~ 222 (1183)
.+.+.. ..|+|||+. .||+.|.|+.+|..||+|.... +|. .+|+|. |+||| +|||+++.+ .+.|+.||+|.
T Consensus 18 ~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~-~~~--~~l~Dl~S~nGt-~vng~~i~~--~~~L~~Gd~i~ 91 (106)
T 3gqs_A 18 EFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGN-DNS--VLIEDLGSKNGV-IVEGRKIEH--QSTLSANQVVA 91 (106)
T ss_dssp EEEECTTCEEEEESCTTTCSEECCCTTSCSSCEEEEECT-TSC--EEEEECSCSSCC-EETTEECSS--EEECCTTCCEE
T ss_pred EEEECCCCEEEEeECCCcCCEEeCCCCcchhhcEEEECC-CCc--EEEEECcCCCCe-EECCEECCC--CeECCCCCEEE
Confidence 455665 469999999 7999999999999999999752 233 789999 77899 799999987 67999999999
Q ss_pred EccCCCeeEEeee
Q 001031 223 FSPSGKHSYIFQQ 235 (1183)
Q Consensus 223 f~~~~~~ayifq~ 235 (1183)
|+. ..+.|..
T Consensus 92 ~G~---~~~~~~~ 101 (106)
T 3gqs_A 92 LGT---TLFLLVD 101 (106)
T ss_dssp ETT---EEEEEEE
T ss_pred ECC---EEEEEEc
Confidence 964 4566653
No 134
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=98.87 E-value=6.5e-09 Score=106.06 Aligned_cols=95 Identities=23% Similarity=0.390 Sum_probs=74.0
Q ss_pred eecccc--CCCCceeee---cceeEEccCC---ccceeecCCCCCccceEEEEeecCCc-ceEEEEEecCCceEEEcCee
Q 001031 136 RLISQC--SQNSHLSMT---GAVFTVGHNR---QCDLYLKDPSISKNLCRLRRIENGGP-SGALLEITGGKGEVEVNGNV 206 (1183)
Q Consensus 136 rL~s~~--~~~p~~~i~---~~~~t~G~~~---~cd~~l~d~~~s~~~c~l~~~~~~g~-~~a~le~~~~~G~v~vNg~~ 206 (1183)
-|+.++ ++-..+-+| ....+|||.. .||+.|.++.||..||.|.....++. .+++++..++||| ||||+.
T Consensus 40 hLvnLn~Dp~ls~~lvy~L~~g~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ngt-~VNG~~ 118 (154)
T 4ejq_A 40 HLVNLNEDPLMSECLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADT-YVNGKK 118 (154)
T ss_dssp EEEECCCCTTCSSEEEEECCSEEEEEECSSCSSCCSEECCCTTCCSEEEEEEEECTTSSSCEEEEEECTTCCE-EETTEE
T ss_pred eEEEecCCcccCceEEEEeCCCCEEEcCCCCCCCCCEEECCCCcccccEEEEEecCCCceeEEEEecCCCCce-EECCEE
Confidence 455554 233344444 5789999975 79999999999999999998755443 4677888899999 799999
Q ss_pred cCCCceEEeeCCCEEEEccCCCeeEEeee
Q 001031 207 HPKDSQVVLRGGDELVFSPSGKHSYIFQQ 235 (1183)
Q Consensus 207 ~~k~~~~~L~~gDev~f~~~~~~ayifq~ 235 (1183)
|.+ .+.|++||+|.|+. .|.|.|.+
T Consensus 119 i~~--~~~L~~GD~I~~G~--~~~Frf~~ 143 (154)
T 4ejq_A 119 VTE--PSILRSGNRIIMGK--SHVFRFNH 143 (154)
T ss_dssp CCS--CEECCTTCEEEETT--TEEEEEEC
T ss_pred cCC--ceECCCCCEEEECC--cEEEEEcC
Confidence 954 68999999999973 46788875
No 135
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.86 E-value=8.4e-09 Score=119.39 Aligned_cols=199 Identities=20% Similarity=0.210 Sum_probs=117.0
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc---
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK--- 1023 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~--- 1023 (1183)
.+.|.....+.+.+.+.. . ......|||+|++||||+++|++|.... +.+|+.++|+.+...
T Consensus 138 ~~ig~s~~m~~l~~~i~~-------~-----a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKK-------I-----SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCSHHHHHHHHHHHH-------H-----TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred hhhhccHHhhHHHHHHHH-------h-----cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 455555566666655542 1 1223469999999999999999998876 479999999875332
Q ss_pred --cccchH-------HHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEE
Q 001031 1024 --WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLA 1094 (1183)
Q Consensus 1024 --~~GesE-------~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIa 1094 (1183)
.+|... ....+.|..|. .++||||||+.| +...+..+.+++++-....-|.......++.||+
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l-----~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~ 277 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELAD---GGTLFLDEIGEL-----SLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILA 277 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTT---TSEEEEESGGGC-----CHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEE
T ss_pred HHhcCCCCCCCCCcccccCCceeeCC---CcEEEEcChhhC-----CHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEE
Confidence 222110 01123444444 389999999988 3333333333332211111111111235788999
Q ss_pred ecCCC-------CCCcHHHHhccCcEEEecCCCHHHH----HHHHHHHHhhc----cC----CChhhHHHHHHHcCCCcH
Q 001031 1095 ATNRP-------FDLDEAVVRRLPRRLMVNLPDAPNR----EKIIRVILAKE----EL----ASDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1095 TTN~p-------~~Ld~aLlrRFd~vI~I~lPd~eeR----~eILk~iL~k~----~l----~~didl~~LA~~TeGySg 1155 (1183)
|||.. ..+.+.+..|+ ..+.+.+|...+| ..++++++.+. .. .++..+..|..+.=-...
T Consensus 278 at~~~l~~~~~~g~fr~dl~~rl-~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNv 356 (387)
T 1ny5_A 278 ATNRNIKELVKEGKFREDLYYRL-GVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNV 356 (387)
T ss_dssp EESSCHHHHHHTTSSCHHHHHHH-TTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHH
T ss_pred eCCCCHHHHHHcCCccHHHHHhh-cCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHH
Confidence 99863 45667777787 4567788887665 34555555432 21 123334445444322345
Q ss_pred HHHHHHHHHHHHHh
Q 001031 1156 SDLKNLCVTAAHCP 1169 (1183)
Q Consensus 1156 ~DL~~L~~~Aa~~A 1169 (1183)
++|++++..|+..+
T Consensus 357 reL~~~i~~~~~~~ 370 (387)
T 1ny5_A 357 RELKNVIERAVLFS 370 (387)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 79999999888754
No 136
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=98.85 E-value=6.6e-09 Score=106.25 Aligned_cols=72 Identities=19% Similarity=0.244 Sum_probs=63.4
Q ss_pred ceeeecceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecCCCceEEeeCCCEEEEc
Q 001031 146 HLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVVLRGGDELVFS 224 (1183)
Q Consensus 146 ~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~~~k~~~~~L~~gDev~f~ 224 (1183)
.+.|....++|||+..||+.|+|+.+|..||+|.... +. ++|+|. |+||| +|||+++. .+.|+.||+|.|+
T Consensus 79 ~~~L~~~~~~IGR~~~~dI~L~d~~VSr~HA~I~~~~--~~--~~l~DlgStNGT-~VNG~~i~---~~~L~~GD~I~lG 150 (157)
T 3oun_A 79 TYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWDG--QV--ALLADLNSTNGT-TVNNAPVQ---EWQLADGDVIRLG 150 (157)
T ss_dssp EEECCSEEEEEESSTTCSEECCCTTSCTTCEEEEECS--SC--EEEEECSCSSCC-EETTEECS---EEECCTTCEEEET
T ss_pred EEEECCCcEEEEeCCCCCEEeCCCCcChhHEEEEEEC--CE--EEEEECCCCCCe-EECCEECc---eEECCCCCEEEEC
Confidence 5677778899999999999999999999999999743 33 889999 67999 79999996 6899999999996
Q ss_pred c
Q 001031 225 P 225 (1183)
Q Consensus 225 ~ 225 (1183)
.
T Consensus 151 ~ 151 (157)
T 3oun_A 151 H 151 (157)
T ss_dssp T
T ss_pred C
Confidence 4
No 137
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.83 E-value=1.2e-08 Score=99.66 Aligned_cols=81 Identities=22% Similarity=0.339 Sum_probs=67.7
Q ss_pred eeeecceeEEcc--CCccceeecCCCCCccceEEEEeecCCcceEEEEEec-CCceEEEcCeecCCCceEEeeCCCEEEE
Q 001031 147 LSMTGAVFTVGH--NRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITG-GKGEVEVNGNVHPKDSQVVLRGGDELVF 223 (1183)
Q Consensus 147 ~~i~~~~~t~G~--~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~-~~G~v~vNg~~~~k~~~~~L~~gDev~f 223 (1183)
..+....++||| +..||+.|.++.+|..||.|... ++. ++|++.+ +||| ||||+++.+ .+.|+.||+|.|
T Consensus 31 ~~L~~~~~~IGr~r~~~~di~l~~~~vSr~Ha~i~~~--~~~--~~l~dl~S~ngt-~vNg~~i~~--~~~L~~GD~I~i 103 (120)
T 1wln_A 31 YRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNM--DGV--VTVTPRSMDAET-YVDGQRISE--TTMLQSGMRLQF 103 (120)
T ss_dssp EECCSEEEECSSSCCSTTCCCCCCTTCCSSCEEEEES--SSC--EEEEESCSSSCE-EETSCBCSS--CEEECTTCEEEE
T ss_pred EEECCCCEEECCCCCCCCcEEECCCCCchhheEEEEc--CCE--EEEEECCCCCCE-EECCEEcCC--CEECCCCCEEEE
Confidence 556678899996 47999999999999999999974 443 8899995 7899 799999983 689999999999
Q ss_pred ccCCCeeEEeeec
Q 001031 224 SPSGKHSYIFQQL 236 (1183)
Q Consensus 224 ~~~~~~ayifq~l 236 (1183)
+.. +.|.|...
T Consensus 104 G~~--~~~~f~~p 114 (120)
T 1wln_A 104 GTS--HVFKFVDP 114 (120)
T ss_dssp TTT--EEEEEECS
T ss_pred CCc--eEEEEECC
Confidence 763 67778743
No 138
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.78 E-value=2.1e-08 Score=138.37 Aligned_cols=139 Identities=23% Similarity=0.393 Sum_probs=93.6
Q ss_pred ceEEEEcCCCChHHHHHHHH-HHHhCCcEEEEecCccccccccchHHHHHHHHHHH-h--------------ccCCeEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAV-ATEAGANFINISMSSITSKWFGEGEKYVKAVFSLA-S--------------KIAPSVVF 1048 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAI-A~eLg~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A-~--------------k~~PsILf 1048 (1183)
++|||+||||||||++|+.+ +...+.+++.++++...+. ..+...+... . ...+.|||
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlF 1341 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLF 1341 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCCceEEEE
Confidence 68999999999999999555 4444788888887654321 2333333322 1 11246999
Q ss_pred EeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccC------CCCEEEEEecCCC-----CCCcHHHHhccCcEEEec
Q 001031 1049 VDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKD------KERVLVLAATNRP-----FDLDEAVVRRLPRRLMVN 1117 (1183)
Q Consensus 1049 IDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~------~~~VlVIaTTN~p-----~~Ld~aLlrRFd~vI~I~ 1117 (1183)
||||+.-...+. +.+. ...++.+++. ..++.... -.++.+|||||++ ..|+++++||| .++.++
T Consensus 1342 iDEinmp~~d~y--g~q~-~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i~ 1416 (2695)
T 4akg_A 1342 CDEINLPKLDKY--GSQN-VVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILYLG 1416 (2695)
T ss_dssp EETTTCSCCCSS--SCCH-HHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEECC
T ss_pred eccccccccccc--Cchh-HHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEEeC
Confidence 999985322221 2222 2234444442 22322111 1468999999998 48999999999 899999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 001031 1118 LPDAPNREKIIRVILAK 1134 (1183)
Q Consensus 1118 lPd~eeR~eILk~iL~k 1134 (1183)
.|+.+++..|+..++..
T Consensus 1417 ~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1417 YPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp CCTTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998865
No 139
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=98.78 E-value=2.2e-08 Score=115.97 Aligned_cols=94 Identities=20% Similarity=0.279 Sum_probs=79.2
Q ss_pred CCccceeccccCCCCceeeecceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEe-cCCceEEEcCeecCC
Q 001031 131 RIPWARLISQCSQNSHLSMTGAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEIT-GGKGEVEVNGNVHPK 209 (1183)
Q Consensus 131 ~~pW~rL~s~~~~~p~~~i~~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~-~~~G~v~vNg~~~~k 209 (1183)
..||..|+.... -..+.+....++|||+..||+.|+|+.+|..||+|... ++. ++|+|. |+||| ||||+++.
T Consensus 286 ~~~~~~l~~~~~-g~~~~l~~~~~~iGR~~~~di~l~~~~vSr~Ha~i~~~--~~~--~~l~Dl~S~nGt-~vng~~i~- 358 (388)
T 2ff4_A 286 QQAVAYLHDIAS-GRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDT--GTN--YVINDLRSSNGV-HVQHERIR- 358 (388)
T ss_dssp SBCCCEEEETTT-CCEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEEC--SSC--EEEEECSCSSCC-EETTEECS-
T ss_pred CCCeEEEEECCC-CcEEEECCCCEEEecCCCCeEEECCCccChhHeEEEEE--CCE--EEEEECCCCCCe-EECCEECC-
Confidence 469999988533 35788889999999999999999999999999999874 333 889996 78999 79999995
Q ss_pred CceEEeeCCCEEEEccCCCeeEEeee
Q 001031 210 DSQVVLRGGDELVFSPSGKHSYIFQQ 235 (1183)
Q Consensus 210 ~~~~~L~~gDev~f~~~~~~ayifq~ 235 (1183)
..+.|++||+|.|+. ..+.|..
T Consensus 359 -~~~~L~~gd~i~~G~---~~~~~~~ 380 (388)
T 2ff4_A 359 -SAVTLNDGDHIRICD---HEFTFQI 380 (388)
T ss_dssp -SEEEECTTCEEEETT---EEEEEEC
T ss_pred -CceECCCCCEEEECC---EEEEEEe
Confidence 589999999999964 5677763
No 140
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=98.74 E-value=5.6e-08 Score=95.81 Aligned_cols=98 Identities=16% Similarity=0.220 Sum_probs=71.7
Q ss_pred CCCCccceeccccCCCCceeee--cceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEecCCceEEEcCee
Q 001031 129 GSRIPWARLISQCSQNSHLSMT--GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNV 206 (1183)
Q Consensus 129 ~~~~pW~rL~s~~~~~p~~~i~--~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vNg~~ 206 (1183)
....|.=-.|.-..+...+.++ ++..+|||...||+.|.++.+|..||.|...+ +|. ++|++.++||| +|||+.
T Consensus 23 ~~~~PhLvnLn~Dp~~s~~l~y~L~~~t~IGR~~~~DI~L~~~~Vs~~Ha~I~~~~-~g~--~~l~dl~~ngt-~VNG~~ 98 (124)
T 3fm8_A 23 GDDKCFLVNLNADPALNELLVYYLKEHTLIGSANSQDIQLCGMGILPEHCIIDITS-EGQ--VMLTPQKNTRT-FVNGSS 98 (124)
T ss_dssp ----CEEEETTCCTTSSCCCEEECCSEEEEESSTTCSEECCSTTCCSSCEEEEECT-TSC--EEEEECTTCCE-EETTEE
T ss_pred cCCccEEEEeCCCCccCceEEEECCCCeEECCCCCCCEEECCCCeecceEEEEECC-CCe--EEEEECCCCCE-EECCEE
Confidence 3344543333333344444444 45789999999999999999999999998642 344 78999999998 799999
Q ss_pred cCCCceEEeeCCCEEEEccCCCeeEEee
Q 001031 207 HPKDSQVVLRGGDELVFSPSGKHSYIFQ 234 (1183)
Q Consensus 207 ~~k~~~~~L~~gDev~f~~~~~~ayifq 234 (1183)
|.+ .+.|+.||.|.|+. .+.|.|-
T Consensus 99 V~~--~~~L~~GD~I~lG~--~~~FrFn 122 (124)
T 3fm8_A 99 VSS--PIQLHHGDRILWGN--NHFFRLN 122 (124)
T ss_dssp CCS--CEEECTTCEEEETT--TEEEEEE
T ss_pred cCC--cEECCCCCEEEECC--CeEEEEE
Confidence 974 78999999999974 3566664
No 141
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.71 E-value=4.1e-09 Score=117.30 Aligned_cols=101 Identities=11% Similarity=0.087 Sum_probs=67.2
Q ss_pred CCCCEEEEEcChhhhhcCCh----------hhHHHHHHHHhcC-------------CCCEEEEEeccCCCcccccCCCCC
Q 001031 702 KSSPLIVFVKDIEKSLTGNN----------DAYGALKSKLENL-------------PSNVVVIGSHTQLDSRKEKSHPGG 758 (1183)
Q Consensus 702 ~~~P~Ilf~~Die~~l~~~~----------~~~~~i~~~L~~L-------------~g~vivIgs~~~~d~~k~k~~~~~ 758 (1183)
+..|.||||+|||++..+.. ++.+.+...|+.+ ..+|+||+++|
T Consensus 97 ~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN------------- 163 (293)
T 3t15_A 97 KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGN------------- 163 (293)
T ss_dssp TSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECS-------------
T ss_pred cCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecC-------------
Confidence 46899999999999765211 3445566666522 24799999999
Q ss_pred ceeeccCcchhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHH--HHHHHHhhhhhhhhhccch
Q 001031 759 LLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLS--DWKQQLERDVETLKGQSNI 836 (1183)
Q Consensus 759 ~~~~~~~~~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlR--Rferq~e~~Lpd~~gR~~I 836 (1183)
.|+.+++ +++| ||++.++ +|+...|.+|
T Consensus 164 -----------------~~~~ld~-------------------------------al~R~~R~d~~i~--~P~~~~r~~I 193 (293)
T 3t15_A 164 -----------------DFSTLYA-------------------------------PLIRDGRMEKFYW--APTREDRIGV 193 (293)
T ss_dssp -----------------SCCC--C-------------------------------HHHHHHHEEEEEE--CCCHHHHHHH
T ss_pred -----------------CcccCCH-------------------------------HHhCCCCCceeEe--CcCHHHHHHH
Confidence 4455555 8877 8877765 6899999999
Q ss_pred hHHHHHhhhCCCCcccchhhhcccCCCCHHHHHH
Q 001031 837 ISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEK 870 (1183)
Q Consensus 837 l~IHT~l~~~~l~~vdL~~LA~~tkgfsgAdIe~ 870 (1183)
++-| +... ..+++.++..+.+|++++|+-
T Consensus 194 l~~~--~~~~---~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 194 CTGI--FRTD---NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHH--HGGG---CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHh--ccCC---CCCHHHHHHHhCCCCcccHHH
Confidence 8855 3322 345677888889999998864
No 142
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.66 E-value=4.6e-08 Score=112.59 Aligned_cols=198 Identities=22% Similarity=0.256 Sum_probs=112.9
Q ss_pred cccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCC--cEEEEecCccccc----
Q 001031 950 DIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGA--NFINISMSSITSK---- 1023 (1183)
Q Consensus 950 DI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~--pfi~I~~s~L~s~---- 1023 (1183)
++.|.......+.+.+... . .....+||+|++||||+++|++|....+. .|+.++|+.+...
T Consensus 130 ~~ig~s~~~~~~~~~~~~~-------a-----~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~ 197 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKI-------A-----KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAES 197 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHH-------H-----TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHH
T ss_pred cccccchHHHHHHhhhhhh-------h-----ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHH
Confidence 4566666666665554321 1 11246999999999999999999988743 3999999875322
Q ss_pred -cccchH-------HHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEe
Q 001031 1024 -WFGEGE-------KYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAA 1095 (1183)
Q Consensus 1024 -~~GesE-------~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaT 1095 (1183)
.+|... ..-...|..|. .++||||||+.| +...+..+.+++++-....-|-.......+.+|++
T Consensus 198 ~lfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l-----~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~a 269 (368)
T 3dzd_A 198 ELFGHEKGAFTGALTRKKGKLELAD---QGTLFLDEVGEL-----DQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISA 269 (368)
T ss_dssp HHHEECSCSSSSCCCCEECHHHHTT---TSEEEEETGGGS-----CHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEE
T ss_pred HhcCccccccCCcccccCChHhhcC---CCeEEecChhhC-----CHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEe
Confidence 111110 01123455443 379999999988 33333333333322111111111112346889999
Q ss_pred cCCC-------CCCcHHHHhccCcEEEecCCCHHHH----HHHHHHHHhhc----cC----CChhhHHHHHHHcCCCcHH
Q 001031 1096 TNRP-------FDLDEAVVRRLPRRLMVNLPDAPNR----EKIIRVILAKE----EL----ASDVDLEGIANMADGYSGS 1156 (1183)
Q Consensus 1096 TN~p-------~~Ld~aLlrRFd~vI~I~lPd~eeR----~eILk~iL~k~----~l----~~didl~~LA~~TeGySg~ 1156 (1183)
||.. ..+.+.+..|+ ..+.+.+|...+| ..++++++.+. .. .++..+..|..+.=--..+
T Consensus 270 t~~~l~~~v~~g~fr~dL~~rl-~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvr 348 (368)
T 3dzd_A 270 TNKNLEEEIKKGNFREDLYYRL-SVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVR 348 (368)
T ss_dssp ESSCHHHHHHTTSSCHHHHHHH-TSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHH
T ss_pred cCCCHHHHHHcCCccHHHHHHh-CCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHH
Confidence 9852 35666777787 4566777776554 45666666542 11 1233344444433122447
Q ss_pred HHHHHHHHHHHH
Q 001031 1157 DLKNLCVTAAHC 1168 (1183)
Q Consensus 1157 DL~~L~~~Aa~~ 1168 (1183)
+|++++..|+..
T Consensus 349 eL~n~i~~~~~~ 360 (368)
T 3dzd_A 349 ELKNLIERAVIL 360 (368)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 888888877754
No 143
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.64 E-value=6.8e-08 Score=98.84 Aligned_cols=70 Identities=21% Similarity=0.266 Sum_probs=45.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccccccccchHH-HHHHHHHHHhccCCeEEEEeCCccc
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEGEK-YVKAVFSLASKIAPSVVFVDEVDSM 1055 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL----g~pfi~I~~s~L~s~~~GesE~-~Ir~lF~~A~k~~PsILfIDEID~L 1055 (1183)
..+++|+||+|+|||+|++++++.+ |..++.+++.++...+...... ....++.. -..|.+|+|||++..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 4679999999999999999999887 6677777766654332110000 00011111 226789999999843
No 144
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.62 E-value=1.7e-07 Score=94.38 Aligned_cols=105 Identities=24% Similarity=0.329 Sum_probs=68.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCC
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRE 1060 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~ 1060 (1183)
...++|+||+|+|||+|+++++..+ |..++.++..++... +....+.||+|||++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~---- 96 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG---- 96 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC----
Confidence 4579999999999999999999987 777888887776543 112357899999998762
Q ss_pred CcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecC-CCCCCc--HHHHhccCcEEEec
Q 001031 1061 NPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATN-RPFDLD--EAVVRRLPRRLMVN 1117 (1183)
Q Consensus 1061 ~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN-~p~~Ld--~aLlrRFd~vI~I~ 1117 (1183)
...++.+..+++.+... ...++|| |++ .+..+. +.+.+|+..-..+.
T Consensus 97 -~~~~~~l~~li~~~~~~--------g~~~iii-ts~~~p~~l~~~~~L~SRl~~g~~~~ 146 (149)
T 2kjq_A 97 -NEEQALLFSIFNRFRNS--------GKGFLLL-GSEYTPQQLVIREDLRTRMAYCLVYE 146 (149)
T ss_dssp -SHHHHHHHHHHHHHHHH--------TCCEEEE-EESSCTTTSSCCHHHHHHGGGSEECC
T ss_pred -hHHHHHHHHHHHHHHHc--------CCcEEEE-ECCCCHHHccccHHHHHHHhcCeeEE
Confidence 22234444444443321 1122444 554 454333 88999986544444
No 145
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=98.62 E-value=1.2e-07 Score=89.13 Aligned_cols=70 Identities=11% Similarity=0.193 Sum_probs=59.6
Q ss_pred CCCceeee-cceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEecCCceEEEcCeecCCCceEEeeCCCE
Q 001031 143 QNSHLSMT-GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDE 220 (1183)
Q Consensus 143 ~~p~~~i~-~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vNg~~~~k~~~~~L~~gDe 220 (1183)
.-|.+.+. ...|++||+++|+|+|+||++|..|+.|.+.++| .|+- .+.||+|||||+++ ..+.|..||-
T Consensus 11 ~~p~v~l~~~~~~rIGR~~~~~l~LddpsVs~~HAti~~~~~G----~~~l-~S~nGtVFVNGqrv---~~~~I~~gDt 81 (102)
T 3uv0_A 11 GLPAILLKADTIYRIGRQKGLEISIADESMELAHATACILRRG----VVRL-AALVGKIFVNDQEE---TVVDIGMENA 81 (102)
T ss_dssp TSCCEECCTTCCEEEESSTTSTEECCCTTSCTTCEEEEEEETT----EEEE-EESSSCEEETTEEE---SEEEECGGGC
T ss_pred CcccEEeecCcEEEEcCCCCCcEEECCcccccceEEEEecCCc----eEEE-EeccCcEEECCEEe---eeEEccCCcc
Confidence 44556555 4789999999999999999999999999988666 4443 49999999999999 5899999998
No 146
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.57 E-value=1.8e-06 Score=96.01 Aligned_cols=185 Identities=14% Similarity=0.105 Sum_probs=111.7
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc-----
Q 001031 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT----- 1021 (1183)
Q Consensus 947 tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~----- 1021 (1183)
....++|.+...+.|.+ +. . ..++|+||+|+|||+|++.+++.++..++.+++....
T Consensus 11 ~~~~~~gR~~el~~L~~-l~---------------~--~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR---------------A--PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI 72 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC---------------S--SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCC
T ss_pred CHHHhcChHHHHHHHHH-hc---------------C--CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCC
Confidence 44678999988888876 42 1 3799999999999999999999987777888765320
Q ss_pred c--cccc---------------------------------c------hHHHHHHHHHHHhcc--CCeEEEEeCCcccccC
Q 001031 1022 S--KWFG---------------------------------E------GEKYVKAVFSLASKI--APSVVFVDEVDSMLGR 1058 (1183)
Q Consensus 1022 s--~~~G---------------------------------e------sE~~Ir~lF~~A~k~--~PsILfIDEID~Ll~~ 1058 (1183)
. .... . ....+..++...... .|.+|+|||++.+...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 73 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL 152 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGC
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhcc
Confidence 0 0000 0 001233344433332 3899999999987431
Q ss_pred CCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCc---------HHHHhccCcEEEecCCCHHHHHHHHH
Q 001031 1059 RENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD---------EAVVRRLPRRLMVNLPDAPNREKIIR 1129 (1183)
Q Consensus 1059 r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld---------~aLlrRFd~vI~I~lPd~eeR~eILk 1129 (1183)
. ...... .+..+.... .++.+|+|++....+. ..+..|+...+.+...+.++..+++.
T Consensus 153 ~-~~~~~~----~l~~~~~~~--------~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~ 219 (357)
T 2fna_A 153 R-GVNLLP----ALAYAYDNL--------KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLR 219 (357)
T ss_dssp T-TCCCHH----HHHHHHHHC--------TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHH
T ss_pred C-chhHHH----HHHHHHHcC--------CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHH
Confidence 0 111111 222222211 2466776665432111 11233555689999999999999998
Q ss_pred HHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHH
Q 001031 1130 VILAKEELASDVDLEGIANMADGYSGSDLKNLCVT 1164 (1183)
Q Consensus 1130 ~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~ 1164 (1183)
..+.......+. ...+...+.|+.. -+..++..
T Consensus 220 ~~~~~~~~~~~~-~~~i~~~t~G~P~-~l~~~~~~ 252 (357)
T 2fna_A 220 RGFQEADIDFKD-YEVVYEKIGGIPG-WLTYFGFI 252 (357)
T ss_dssp HHHHHHTCCCCC-HHHHHHHHCSCHH-HHHHHHHH
T ss_pred HHHHHcCCCCCc-HHHHHHHhCCCHH-HHHHHHHH
Confidence 877643333222 3788888888653 45555543
No 147
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.52 E-value=1.3e-07 Score=98.34 Aligned_cols=69 Identities=20% Similarity=0.318 Sum_probs=46.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccccccch-HHHHHHHHHHHhccCCeEEEEeCCccc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~~Ges-E~~Ir~lF~~A~k~~PsILfIDEID~L 1055 (1183)
.+++|+||+|||||+||+++++.+ +.+++.+++.++........ ...+..++.... .+.+|||||++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~ 127 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAE 127 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 689999999999999999999988 67888888776543321110 000122222222 2369999999765
No 148
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=98.52 E-value=3.3e-07 Score=88.31 Aligned_cols=95 Identities=15% Similarity=0.134 Sum_probs=80.0
Q ss_pred cceeccccCCCCceeee--cceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEecCCceEEEcCeecCCCc
Q 001031 134 WARLISQCSQNSHLSMT--GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDS 211 (1183)
Q Consensus 134 W~rL~s~~~~~p~~~i~--~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vNg~~~~k~~ 211 (1183)
-|.|.|+...+|.|.|. ....+|||+.- ..+.|...|..||+|+-.-.++. +.+-+.|.|++ +|||+++.|+.
T Consensus 9 ~c~L~~~~~~~~~I~Lp~~~g~~viGR~p~--t~I~DkrcSR~hv~L~ad~~~~~--v~vk~lG~Np~-~vng~~l~k~~ 83 (110)
T 2brf_A 9 RLWLESPPGEAPPIFLPSDGQALVLGRGPL--TQVTDRKCSRTQVELVADPETRT--VAVKQLGVNPS-TTGTQELKPGL 83 (110)
T ss_dssp EEEEECSTTSSCCEECCSTTCCEEECSBTT--TTBCCTTSCSSCEEEEEETTTTE--EEEEECSSSCC-EEC-CBCCTTC
T ss_pred EEEEEeCCCCCCcEEeccCCCCEEEcCCCC--cccccccceeeeEEEEEecCCCE--EEEEEcccCCc-EECCEEcCCCC
Confidence 47899999999999995 68999999994 45899999999999995534444 66789999999 59999999999
Q ss_pred eEEeeCCCEEEEccCCCeeEEee
Q 001031 212 QVVLRGGDELVFSPSGKHSYIFQ 234 (1183)
Q Consensus 212 ~~~L~~gDev~f~~~~~~ayifq 234 (1183)
.+.|++||.+.+ ..++|.|-++
T Consensus 84 ~~~L~~GD~leL-l~g~y~~~v~ 105 (110)
T 2brf_A 84 EGSLGVGDTLYL-VNGLHPLTLR 105 (110)
T ss_dssp EEEEETTCEEEE-ETTEEEEEEE
T ss_pred EEEecCCCEEEE-ccCCeEEEEE
Confidence 999999999987 5778777655
No 149
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.51 E-value=4.8e-06 Score=92.41 Aligned_cols=189 Identities=17% Similarity=0.123 Sum_probs=112.1
Q ss_pred CcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccc-----
Q 001031 947 TFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSIT----- 1021 (1183)
Q Consensus 947 tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~----- 1021 (1183)
.-..++|.+...+.|.+.+.. + ..++|+||+|+|||+|++.+++..+ ++.+++....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~----------~------~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~ 71 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN----------Y------PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGH 71 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH----------C------SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTC
T ss_pred ChHhcCChHHHHHHHHHHHhc----------C------CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccC
Confidence 345789999999998887641 1 4799999999999999999999886 5666653221
Q ss_pred -------c---ccc-------------------------cchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHH
Q 001031 1022 -------S---KWF-------------------------GEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHE 1066 (1183)
Q Consensus 1022 -------s---~~~-------------------------GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e 1066 (1183)
. ..+ ......+..+...+....|.+|+|||++.+..... .....
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~-~~~~~ 150 (350)
T 2qen_A 72 ITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS-RGGKE 150 (350)
T ss_dssp BCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-TTTHH
T ss_pred CCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-cchhh
Confidence 0 000 01112222222233333489999999998742100 00111
Q ss_pred HHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCc---------HHHHhccCcEEEecCCCHHHHHHHHHHHHhhccC
Q 001031 1067 AMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLD---------EAVVRRLPRRLMVNLPDAPNREKIIRVILAKEEL 1137 (1183)
Q Consensus 1067 ~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld---------~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l 1137 (1183)
. ...+..+... . .++.+|.|+.....+. ..+..|+...+.+...+.++-.+++...+.....
T Consensus 151 ~-~~~L~~~~~~---~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~ 221 (350)
T 2qen_A 151 L-LALFAYAYDS---L-----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL 221 (350)
T ss_dssp H-HHHHHHHHHH---C-----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred H-HHHHHHHHHh---c-----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 1 1222222221 1 2466666654421111 1223355567899999999999999887765433
Q ss_pred C-ChhhHHHHHHHcCCCcHHHHHHHHHH
Q 001031 1138 A-SDVDLEGIANMADGYSGSDLKNLCVT 1164 (1183)
Q Consensus 1138 ~-~didl~~LA~~TeGySg~DL~~L~~~ 1164 (1183)
. .+..+..+...+.|+. .-+..++..
T Consensus 222 ~~~~~~~~~i~~~tgG~P-~~l~~~~~~ 248 (350)
T 2qen_A 222 DVPENEIEEAVELLDGIP-GWLVVFGVE 248 (350)
T ss_dssp CCCHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 2 4556788888898865 456555543
No 150
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=98.50 E-value=4.7e-07 Score=86.23 Aligned_cols=95 Identities=20% Similarity=0.271 Sum_probs=79.4
Q ss_pred cceeccccCCCCceeee-cceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEecCCceEEEcCeecCCCce
Q 001031 134 WARLISQCSQNSHLSMT-GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQ 212 (1183)
Q Consensus 134 W~rL~s~~~~~p~~~i~-~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vNg~~~~k~~~ 212 (1183)
=|-|.|+....|.+.+. +...+|||+..|.+ .|...|..||+|+-...+|. +.+-+.|.|++ +|||+.+.|+..
T Consensus 4 ~c~L~~~~~~~~~I~L~~g~~v~iGR~p~t~I--~DkrcSR~h~~L~~~~~~g~--v~vk~lg~Np~-~vng~~l~k~~~ 78 (102)
T 3kt9_A 4 VCWLVRQDSRHQRIRLPHLEAVVIGRGPETKI--TDKKCSRQQVQLKAECNKGY--VKVKQVGVNPT-SIDSVVIGKDQE 78 (102)
T ss_dssp EEEEEETTSTTCEEECCBTCEEEECSSTTTCC--CCTTSCSSCEEEEEETTTTE--EEEEECSSSCC-EETTEECCBTCE
T ss_pred eEEEEecCCCCCcEEcCCCCcEEeccCCcccc--ccCcccCcceEEEEecCCCE--EEEEECcCCCC-eECCEEcCCCCe
Confidence 37799998888888886 46788999998855 79999999999997755553 67889999999 599999999999
Q ss_pred EEeeCCCEEEEccCCCeeEEee
Q 001031 213 VVLRGGDELVFSPSGKHSYIFQ 234 (1183)
Q Consensus 213 ~~L~~gDev~f~~~~~~ayifq 234 (1183)
+.|++||.|.+ .+++|.|-++
T Consensus 79 ~~L~~GD~l~L-l~~~~~~~v~ 99 (102)
T 3kt9_A 79 VKLQPGQVLHM-VNELYPYIVE 99 (102)
T ss_dssp EEECTTCCEEE-ETTEEEEEEE
T ss_pred EEeCCCCEEEE-ccCCceEEEE
Confidence 99999999877 4667766543
No 151
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.49 E-value=1.3e-07 Score=85.12 Aligned_cols=57 Identities=28% Similarity=0.501 Sum_probs=54.0
Q ss_pred cCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1117 NLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1117 ~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
++|+.++|.+||+.++.+..+..++++..||..|+||||+||.++|++|++.++++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~ 57 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER 57 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 589999999999999999888889999999999999999999999999999999874
No 152
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.45 E-value=3.3e-07 Score=108.17 Aligned_cols=202 Identities=17% Similarity=0.109 Sum_probs=111.1
Q ss_pred ccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHH-HHHhCCcEEEEe-cCc---cccccc
Q 001031 951 IGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAV-ATEAGANFINIS-MSS---ITSKWF 1025 (1183)
Q Consensus 951 I~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAI-A~eLg~pfi~I~-~s~---L~s~~~ 1025 (1183)
|.|++.+|..|.-.+.-.... .+...+|||.|+||| ||+||+++ ++.+....+... ++. +.....
T Consensus 215 I~G~e~vK~aLll~L~GG~~k---------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK---------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS---------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc---------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEE
Confidence 678888887775544321100 111237999999999 99999999 665533222211 111 111100
Q ss_pred cch-HHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC----
Q 001031 1026 GEG-EKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF---- 1100 (1183)
Q Consensus 1026 Ges-E~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~---- 1100 (1183)
+.+ -..-.+.+..|. .+|+|||||+.+ ++..+..+.+.+++-...+.|. .-+.++.||||+|+..
T Consensus 285 ~~tG~~~~~G~l~LAd---gGvl~lDEIn~~-----~~~~qsaLlEaMEe~~VtI~G~--~lparf~VIAA~NP~~~yd~ 354 (506)
T 3f8t_A 285 EDRGWALRAGAAVLAD---GGILAVDHLEGA-----PEPHRWALMEAMDKGTVTVDGI--ALNARCAVLAAINPGEQWPS 354 (506)
T ss_dssp ESSSEEEEECHHHHTT---TSEEEEECCTTC-----CHHHHHHHHHHHHHSEEEETTE--EEECCCEEEEEECCCC--CC
T ss_pred cCCCcccCCCeeEEcC---CCeeehHhhhhC-----CHHHHHHHHHHHhCCcEEECCE--EcCCCeEEEEEeCcccccCC
Confidence 000 000012333443 389999999987 4455566666666544445554 3357899999999865
Q ss_pred -------CCcHHHHhccCcEEE-ecCCCHHHH---------HHHHHHHH---h-h---ccCCChhhHHHHH-------H-
Q 001031 1101 -------DLDEAVVRRLPRRLM-VNLPDAPNR---------EKIIRVIL---A-K---EELASDVDLEGIA-------N- 1148 (1183)
Q Consensus 1101 -------~Ld~aLlrRFd~vI~-I~lPd~eeR---------~eILk~iL---~-k---~~l~~didl~~LA-------~- 1148 (1183)
.|.+++++||+..+. ++.|+.+.. .+.++.+. + . ..+ ++...+.|. .
T Consensus 355 ~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~l-s~ea~~yI~~~y~~tR~~ 433 (506)
T 3f8t_A 355 DPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPEL-TEEARKRLEHWYETRREE 433 (506)
T ss_dssp SCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEE-CHHHHHHHHHHHHHHHHH
T ss_pred CCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCcee-CHHHHHHHHHHHHHHhcC
Confidence 889999999986544 355554331 11222221 2 1 112 222111111 0
Q ss_pred ---------HcCCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1149 ---------MADGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1149 ---------~TeGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
..-|.|++.+..|++.|...|.-+.
T Consensus 434 ~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~g 467 (506)
T 3f8t_A 434 VEERLGMGLPTLPVTRRQLESVERLAKAHARMRL 467 (506)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHHcC
Confidence 1237899999999998887776554
No 153
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.43 E-value=1.6e-07 Score=86.79 Aligned_cols=58 Identities=28% Similarity=0.493 Sum_probs=54.6
Q ss_pred ecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1116 VNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1116 I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
-.+|+.++|.+||+.++++..+..++++..||..|+||||+||.+||++|++.|+++.
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~ 65 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER 65 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc
Confidence 3589999999999999999888889999999999999999999999999999999874
No 154
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.41 E-value=1.1e-07 Score=87.92 Aligned_cols=75 Identities=8% Similarity=-0.043 Sum_probs=60.9
Q ss_pred hhhhhhhccchhHHHHHhhhCCCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhHH
Q 001031 826 DVETLKGQSNIISIRSVLSRNGLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLN 905 (1183)
Q Consensus 826 ~Lpd~~gR~~Il~IHT~l~~~~l~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~ 905 (1183)
..||.++|.+||++|++.+... .+++++.||..|.||+||||+.||++|+..++.+.. ..+...
T Consensus 9 ~~Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~---------------~~I~~~ 72 (86)
T 2krk_A 9 SHPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR---------------VHVTQE 72 (86)
T ss_dssp CCCCHHHHHHHHHHHTTTSEEC-TTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTC---------------SEECHH
T ss_pred CCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcC---------------CCCCHH
Confidence 5799999999999997633222 689999999999999999999999999999997541 245678
Q ss_pred HHHhhhhhhhh
Q 001031 906 ILQGIQSESKS 916 (1183)
Q Consensus 906 dF~~al~eikp 916 (1183)
||+.++..+++
T Consensus 73 df~~Al~~v~p 83 (86)
T 2krk_A 73 DFEMAVAKVMQ 83 (86)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHcc
Confidence 88887766544
No 155
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.40 E-value=1.8e-06 Score=119.58 Aligned_cols=132 Identities=18% Similarity=0.202 Sum_probs=96.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcch
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~ 1064 (1183)
.++++.||+|||||.+++++|+.+|.+++.++|.+-+. ...+..+|..+... ++++++|||+++ .+..
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~-----~~ev 713 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRL-----DEKV 713 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSS-----CHHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhc-----ChHH
Confidence 57999999999999999999999999999999987443 24557777777664 489999999987 3333
Q ss_pred HHHHHHHHHHHHHhh---------cCCcccCCCCEEEEEecCC----CCCCcHHHHhccCcEEEecCCCHHHHHHHHH
Q 001031 1065 HEAMRKMKNEFMVNW---------DGLRTKDKERVLVLAATNR----PFDLDEAVVRRLPRRLMVNLPDAPNREKIIR 1129 (1183)
Q Consensus 1065 ~e~l~~il~~LL~~L---------dgl~~k~~~~VlVIaTTN~----p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk 1129 (1183)
...+...+..+...+ .|-...-+..+.|++|.|+ ...|++++.+|| +.+.+..|+.+...+|+-
T Consensus 714 Ls~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 714 LSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHHHHH
Confidence 333333333333222 1211223466788899984 467999999999 789999999888777753
No 156
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=98.38 E-value=1.2e-06 Score=87.53 Aligned_cols=97 Identities=15% Similarity=0.089 Sum_probs=83.0
Q ss_pred ccceeccccCCCCceeee--cceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEecCCceEEEcCeecCCC
Q 001031 133 PWARLISQCSQNSHLSMT--GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKD 210 (1183)
Q Consensus 133 pW~rL~s~~~~~p~~~i~--~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vNg~~~~k~ 210 (1183)
+-|.|.++...+|.|.|. ....+|||+. ...+.|...|..||+|+-.-.+|. +.+=..|.|++ +|||+.+.|+
T Consensus 8 ~~c~L~p~d~~~~~I~Lp~~~g~vvIGRgP--et~ItDkRcSR~qv~L~ad~~~g~--V~Vk~lG~NP~-~vng~~L~k~ 82 (143)
T 1yj5_C 8 GRLWLQSPTGGPPPIFLPSDGQALVLGRGP--LTQVTDRKCSRNQVELIADPESRT--VAVKQLGVNPS-TVGVHELKPG 82 (143)
T ss_dssp EEEEEECCTTSCCCEECCTTTCEEEECSBT--TTTBCCSSSCSSCEEEEEETTTTE--EEEEECSSSCC-EETTEECCTT
T ss_pred CeEEEEecCCCCCcEEeccCCCCEEEcCCC--ccccccccccceeEEEEEecCCCe--EEEEEcccCCc-EECCEEecCC
Confidence 678999999999999995 6899999999 456899999999999995433333 56779999999 5999999999
Q ss_pred ceEEeeCCCEEEEccCCCeeEEeee
Q 001031 211 SQVVLRGGDELVFSPSGKHSYIFQQ 235 (1183)
Q Consensus 211 ~~~~L~~gDev~f~~~~~~ayifq~ 235 (1183)
..+.|++||.|.+ ..|.|.|-+.-
T Consensus 83 ~~~~L~~GD~LeL-l~g~y~f~V~f 106 (143)
T 1yj5_C 83 LSGSLSLGDVLYL-VNGLYPLTLRW 106 (143)
T ss_dssp CEEEECTTCEEES-SSSCSEEEEEE
T ss_pred CEEEecCCCEEEE-ecCCceEEEEe
Confidence 9999999999977 67888887764
No 157
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.30 E-value=3.9e-07 Score=103.17 Aligned_cols=106 Identities=15% Similarity=0.244 Sum_probs=64.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc--EEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGAN--FINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENP 1062 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~p--fi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~ 1062 (1183)
..+||+||||+|||+||.++|...+.+ |+.+...+..+.+....+..+..++....+.. +||||+|+.+.......
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~ 201 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGN 201 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccccccc
Confidence 458999999999999999999876544 55553233333333445666666766666655 99999999985433210
Q ss_pred ----chHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCC
Q 001031 1063 ----GEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR 1098 (1183)
Q Consensus 1063 ----~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~ 1098 (1183)
.....+++++..|...+.. .++.+|+++|.
T Consensus 202 s~~G~v~~~lrqlL~~L~~~~k~------~gvtVIlttnp 235 (331)
T 2vhj_A 202 TTSGGISRGAFDLLSDIGAMAAS------RGCVVIASLNP 235 (331)
T ss_dssp -----CCHHHHHHHHHHHHHHHH------HTCEEEEECCC
T ss_pred cccchHHHHHHHHHHHHHHHHhh------CCCEEEEEeCC
Confidence 0123344444444443322 34678888884
No 158
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=98.29 E-value=8.2e-07 Score=86.56 Aligned_cols=96 Identities=16% Similarity=0.106 Sum_probs=81.6
Q ss_pred ccceeccccCCCCceeee--cceeEEccCCccceeecCCCCCccceEEEEeecCCcceEEEEEecCCceEEEcCeecCCC
Q 001031 133 PWARLISQCSQNSHLSMT--GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKD 210 (1183)
Q Consensus 133 pW~rL~s~~~~~p~~~i~--~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vNg~~~~k~ 210 (1183)
.-|.|.++...+|.|.|. ....+|||+.- ..+.|...|..||+|+-.-.++. +.+-..|.|++ +|||+++.|+
T Consensus 15 ~~c~L~~~~~~~~~I~Lp~~~g~~viGRgp~--t~I~DkrcSR~qv~L~ad~~~~~--v~vk~lG~NP~-~vng~~l~k~ 89 (119)
T 1ujx_A 15 GRLWLQSPTGGPPPIFLPSDGQALVLGRGPL--TQVTDRKCSRNQVELIADPESRT--VAVKQLGVNPS-TVGVQELKPG 89 (119)
T ss_dssp CCEEEECCSSSCCCCCCCTTSCCEEESBBTT--TTBCCTTSCTTSEEEEEETTTTE--EEEEECSSSCC-BSSSSBCCTT
T ss_pred ceEEEEeCCCCCCcEEeccCCCCEEEcCCCC--cccccccccceeEEEEEecCCCE--EEEEEcccCCc-EECCEEecCC
Confidence 568899999999999995 68999999994 56799999999999995433333 66779999999 5999999999
Q ss_pred ceEEeeCCCEEEEccCCCeeEEee
Q 001031 211 SQVVLRGGDELVFSPSGKHSYIFQ 234 (1183)
Q Consensus 211 ~~~~L~~gDev~f~~~~~~ayifq 234 (1183)
..+.|++||.+.+ ..+.|.|-++
T Consensus 90 ~~~~L~~GD~l~L-l~g~y~~~v~ 112 (119)
T 1ujx_A 90 LSGSLSLGDVLYL-VNGLYPLTLR 112 (119)
T ss_dssp CEEEEETTCCCBC-BTTBSCCEEE
T ss_pred CEEEecCCCEEEE-ecCCeEEEEE
Confidence 9999999999877 5788888665
No 159
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.29 E-value=6.2e-07 Score=94.95 Aligned_cols=128 Identities=14% Similarity=0.200 Sum_probs=79.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH--------hC-CcEEEEecCccccccc----------cchHH--HHHHHHHHH--hc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATE--------AG-ANFINISMSSITSKWF----------GEGEK--YVKAVFSLA--SK 1041 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~e--------Lg-~pfi~I~~s~L~s~~~----------GesE~--~Ir~lF~~A--~k 1041 (1183)
.-.|++|+||+|||++|.+++.. .| .+++..++..+..... ..... ....++..+ ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 35799999999999999886544 34 6776677665543221 11100 012233321 22
Q ss_pred cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCH
Q 001031 1042 IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDA 1121 (1183)
Q Consensus 1042 ~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~ 1121 (1183)
...+||+|||++.+++.+.... +.. + ++..+.. ..+..+-||.+|+.+..|+..+++|+...+++..|..
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~--e~~-r----ll~~l~~---~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGS--KIP-E----NVQWLNT---HRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKM 155 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTC--CCC-H----HHHGGGG---TTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSS
T ss_pred cCceEEEEEChhhhccCccccc--hhH-H----HHHHHHh---cCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCccc
Confidence 3478999999999976552211 111 1 2333322 1234567778888899999999999998888877654
Q ss_pred H
Q 001031 1122 P 1122 (1183)
Q Consensus 1122 e 1122 (1183)
.
T Consensus 156 ~ 156 (199)
T 2r2a_A 156 G 156 (199)
T ss_dssp C
T ss_pred C
Confidence 4
No 160
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.28 E-value=3.4e-07 Score=82.42 Aligned_cols=72 Identities=10% Similarity=0.012 Sum_probs=58.6
Q ss_pred hhhhhhhccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhH
Q 001031 826 DVETLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGL 904 (1183)
Q Consensus 826 ~Lpd~~gR~~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~ 904 (1183)
+|||.++|.+|+++|+. ..++ .+++++.||..|.||+||||+.+|++|+..++.+.. ..+..
T Consensus 1 plPd~~~R~~Il~~~l~--~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~---------------~~i~~ 63 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSR--KMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR---------------VHVTQ 63 (78)
T ss_dssp CCCCHHHHHHHHHHHHT--TSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC---------------SEECH
T ss_pred CcCCHHHHHHHHHHHhc--CCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC---------------CCCCH
Confidence 68999999999999965 2333 688999999999999999999999999999997531 23456
Q ss_pred HHHHhhhhhh
Q 001031 905 NILQGIQSES 914 (1183)
Q Consensus 905 ~dF~~al~ei 914 (1183)
.||..++..+
T Consensus 64 ~d~~~Al~~v 73 (78)
T 3kw6_A 64 EDFEMAVAKV 73 (78)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7787776554
No 161
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.23 E-value=1.2e-06 Score=81.11 Aligned_cols=54 Identities=22% Similarity=0.402 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1120 DAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1120 d~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
|.++|.+||+.++.+.++..++++..||..|+||||+||.+||++|++.|+++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~ 55 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR 55 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 568999999999999998889999999999999999999999999999999984
No 162
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.18 E-value=1.1e-06 Score=98.58 Aligned_cols=70 Identities=24% Similarity=0.329 Sum_probs=45.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccccccccch-HHHHHHHHHHHhccCCeEEEEeCCccc
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSKWFGEG-EKYVKAVFSLASKIAPSVVFVDEVDSM 1055 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL----g~pfi~I~~s~L~s~~~Ges-E~~Ir~lF~~A~k~~PsILfIDEID~L 1055 (1183)
..+++|+||||||||+||.+||+++ +.+++.+.++++........ ...+..++.... ...|||||||+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 4689999999999999999999865 47888888776544322110 111111222222 3469999999654
No 163
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=98.18 E-value=5.7e-06 Score=86.73 Aligned_cols=96 Identities=24% Similarity=0.391 Sum_probs=72.2
Q ss_pred eecccc--CCCCceeee---cceeEEccC---CccceeecCCCCCccceEEEEeecCC-cceEEEEEecCCceEEEcCee
Q 001031 136 RLISQC--SQNSHLSMT---GAVFTVGHN---RQCDLYLKDPSISKNLCRLRRIENGG-PSGALLEITGGKGEVEVNGNV 206 (1183)
Q Consensus 136 rL~s~~--~~~p~~~i~---~~~~t~G~~---~~cd~~l~d~~~s~~~c~l~~~~~~g-~~~a~le~~~~~G~v~vNg~~ 206 (1183)
-|+.++ ++...+.+| ...-+|||. ..||+.|.++.|+..||.|.....++ ..++.|+...++.| +|||+.
T Consensus 70 hLvnLn~Dp~ls~~l~y~L~~g~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~~~~~~~vtl~p~~~a~t-~VNG~~ 148 (184)
T 4egx_A 70 HLVNLNEDPLMSECLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADT-YVNGKK 148 (184)
T ss_dssp EEEECCCCTTCSSCSEEECCSEEEEEECSSSSSCCSEECCSTTCCSEEEEEEEECCSSCSCEEEEEECTTCCE-EETTEE
T ss_pred eEEeccCCcccCceEEEEECCCcCcCCCCCcCCCCeEEECccccccccEEEEEcCCCCceEEEEEeeCCCCeE-EEcCEE
Confidence 355554 233344444 356899985 46999999999999999999765443 34678888766655 899999
Q ss_pred cCCCceEEeeCCCEEEEccCCCeeEEeeec
Q 001031 207 HPKDSQVVLRGGDELVFSPSGKHSYIFQQL 236 (1183)
Q Consensus 207 ~~k~~~~~L~~gDev~f~~~~~~ayifq~l 236 (1183)
|.. .+.|++||.|+|+ .+|.|.|.+.
T Consensus 149 I~~--~~~L~~GDrI~lG--~~h~Frfn~P 174 (184)
T 4egx_A 149 VTE--PSILRSGNRIIMG--KSHVFRFNHP 174 (184)
T ss_dssp CCS--CEECCTTCEEEET--TTEEEEEECH
T ss_pred ccc--cEEcCCCCEEEEC--CCCEEEECCh
Confidence 964 6889999999997 4688998753
No 164
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.17 E-value=1.2e-06 Score=81.05 Aligned_cols=71 Identities=14% Similarity=0.024 Sum_probs=57.9
Q ss_pred hhhhccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhHHHH
Q 001031 829 TLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 907 (1183)
Q Consensus 829 d~~gR~~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~dF 907 (1183)
|.++|.+|++||++- .++ ++++++.||..|.||+||||+.||++|+..++.+... .+...||
T Consensus 2 d~~~R~~Il~~~~~~--~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~---------------~i~~~df 64 (88)
T 3vlf_B 2 DLEGRANIFRIHSKS--MSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRK---------------VATEKDF 64 (88)
T ss_dssp CSSHHHHHHHHHHTT--SCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCS---------------SBCHHHH
T ss_pred CHHHHHHHHHHHHCC--CCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccc---------------cCCHHHH
Confidence 567899999999763 233 6899999999999999999999999999999986432 2567888
Q ss_pred Hhhhhhhhh
Q 001031 908 QGIQSESKS 916 (1183)
Q Consensus 908 ~~al~eikp 916 (1183)
+.++..+.+
T Consensus 65 ~~Al~~v~~ 73 (88)
T 3vlf_B 65 LKAVDKVIS 73 (88)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhc
Confidence 888766653
No 165
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.08 E-value=2.1e-06 Score=78.04 Aligned_cols=71 Identities=11% Similarity=0.032 Sum_probs=57.8
Q ss_pred hhhhccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhHHHH
Q 001031 829 TLKGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNIL 907 (1183)
Q Consensus 829 d~~gR~~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~dF 907 (1183)
|.++|.+|+++|++.. ++ ++++++.||..|.||+||||+.+|++|+..++.+.. ..+...||
T Consensus 2 d~~~R~~Il~~~l~~~--~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~---------------~~i~~~df 64 (83)
T 3aji_B 2 DRRQKRLIFSTITSKM--NLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENR---------------YIVLAKDF 64 (83)
T ss_dssp CHHHHHHHHHHHHTTS--CBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCC---------------SSBCHHHH
T ss_pred CHHHHHHHHHHHhCCC--CCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc---------------CCcCHHHH
Confidence 4678999999997632 33 688999999999999999999999999999987542 23567888
Q ss_pred Hhhhhhhhh
Q 001031 908 QGIQSESKS 916 (1183)
Q Consensus 908 ~~al~eikp 916 (1183)
..++..++|
T Consensus 65 ~~Al~~~~p 73 (83)
T 3aji_B 65 EKAYKTVIK 73 (83)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHcc
Confidence 888777765
No 166
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.03 E-value=2.5e-06 Score=77.55 Aligned_cols=54 Identities=30% Similarity=0.492 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1120 DAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1120 d~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
+.++|.+||+.++.+..+..++++..||..|+||||+||.++|++|++.|+++.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~ 55 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN 55 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 678999999999999888889999999999999999999999999999998864
No 167
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.01 E-value=1.6e-05 Score=111.20 Aligned_cols=139 Identities=21% Similarity=0.354 Sum_probs=89.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEecCccccccccchHHHHHHHHHHH---hc-------------cCCeEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA-GANFINISMSSITSKWFGEGEKYVKAVFSLA---SK-------------IAPSVV 1047 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL-g~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A---~k-------------~~PsIL 1047 (1183)
++|||+||||||||+++......+ +.+++.++++.-.. ...+.+.+... ++ .+..||
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 569999999999998876654444 67778888765332 22333333321 11 112599
Q ss_pred EEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcc------cCCCCEEEEEecCCC-----CCCcHHHHhccCcEEEe
Q 001031 1048 FVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRT------KDKERVLVLAATNRP-----FDLDEAVVRRLPRRLMV 1116 (1183)
Q Consensus 1048 fIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~------k~~~~VlVIaTTN~p-----~~Ld~aLlrRFd~vI~I 1116 (1183)
|||||+. +.....+.+.. ..++.+++..- ++.. ..-.++.+|||+|++ ..|+++++||| .++.+
T Consensus 1379 FiDDiNm--p~~D~yGtQ~~-ielLrqlld~~-g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F-~vi~i 1453 (3245)
T 3vkg_A 1379 FCDEINL--PSTDKYGTQRV-ITFIRQMVEKG-GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA-PILLV 1453 (3245)
T ss_dssp EETTTTC--CCCCTTSCCHH-HHHHHHHHHHS-EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC-CEEEC
T ss_pred EecccCC--CCccccccccH-HHHHHHHHHcC-CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc-eEEEe
Confidence 9999984 22222222222 23444444321 1111 122578899999987 46999999999 67999
Q ss_pred cCCCHHHHHHHHHHHHhh
Q 001031 1117 NLPDAPNREKIIRVILAK 1134 (1183)
Q Consensus 1117 ~lPd~eeR~eILk~iL~k 1134 (1183)
+.|+.++...|+..++..
T Consensus 1454 ~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1454 DFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999998887654
No 168
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.99 E-value=8.8e-06 Score=86.78 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=69.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcch
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~ 1064 (1183)
+++||+||||||||++|.++|+.+...++.+..... ..+ +..+. ...||+|||+|.-
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s-~f~-----------l~~l~--~~kIiiLDEad~~--------- 115 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS-HFW-----------LEPLT--DTKVAMLDDATTT--------- 115 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSS-CGG-----------GGGGT--TCSSEEEEEECHH---------
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccc-hhh-----------hcccC--CCCEEEEECCCch---------
Confidence 579999999999999999999998655433221110 000 01111 2349999999731
Q ss_pred HHHHHHHH-HHHHHhhcCCc----ccCC-----CCEEEEEecCCC---CCCcHHHHhccCcEEEecCC------------
Q 001031 1065 HEAMRKMK-NEFMVNWDGLR----TKDK-----ERVLVLAATNRP---FDLDEAVVRRLPRRLMVNLP------------ 1119 (1183)
Q Consensus 1065 ~e~l~~il-~~LL~~Ldgl~----~k~~-----~~VlVIaTTN~p---~~Ld~aLlrRFd~vI~I~lP------------ 1119 (1183)
..+.+ ..+...++|-. .+-+ ....+|.|||.. +.--..+.+|+ ..+.++.|
T Consensus 116 ---~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi-~~f~F~~~~p~~~~g~p~~~ 191 (212)
T 1tue_A 116 ---CWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRI-TVFEFPNAFPFDKNGNPVYE 191 (212)
T ss_dssp ---HHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSC-EEEECCSCCCBCTTSCBSCC
T ss_pred ---hHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhE-EEEEcCCCCCCCCCCCeeEE
Confidence 12222 23334445531 0111 123567788863 33336788888 56666532
Q ss_pred -CHHHHHHHHHHHHhhc
Q 001031 1120 -DAPNREKIIRVILAKE 1135 (1183)
Q Consensus 1120 -d~eeR~eILk~iL~k~ 1135 (1183)
+.+....+|+.+-.+.
T Consensus 192 ~~~~~wk~ff~~~~~~l 208 (212)
T 1tue_A 192 INDKNWKCFFERTWSRL 208 (212)
T ss_dssp CCHHHHHHHHHHHTGGG
T ss_pred eCcchHHHHHHHHHHhc
Confidence 2455666666655443
No 169
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.87 E-value=7.5e-05 Score=104.58 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=92.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcch
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPGE 1064 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~~ 1064 (1183)
.+..+.||+|||||.+++.+|+.+|.+++.++|.+-+. ...+..+|..+.+. .+..++|||+++ ....
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl-----~~~v 672 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRL-----EERI 672 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSS-----CHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcC-----CHHH
Confidence 36789999999999999999999999999999987433 23456677766653 578999999987 2222
Q ss_pred HHHHHHHHHHHHHhh---------c-CCcccCCCCEEEEEecCC----CCCCcHHHHhccCcEEEecCCCHHHHHHHH
Q 001031 1065 HEAMRKMKNEFMVNW---------D-GLRTKDKERVLVLAATNR----PFDLDEAVVRRLPRRLMVNLPDAPNREKII 1128 (1183)
Q Consensus 1065 ~e~l~~il~~LL~~L---------d-gl~~k~~~~VlVIaTTN~----p~~Ld~aLlrRFd~vI~I~lPd~eeR~eIL 1128 (1183)
..+....+..+...+ . |-...-+..+.|++|.|+ ...|++.+..|| +.+.+..||.+...+|+
T Consensus 673 LSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei~ 749 (3245)
T 3vkg_A 673 LSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKPDREMIAQVM 749 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCCCHHHHHHHH
Confidence 222222222222111 1 212223456788899985 468999999999 88999999988777764
No 170
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.83 E-value=2.5e-05 Score=86.39 Aligned_cols=126 Identities=18% Similarity=0.242 Sum_probs=67.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCcccccCCCCcc
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLGRRENPG 1063 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~~r~~~~ 1063 (1183)
.++|||+||||||||++|.+||+.++. +-.++... ..+ .|.. .....|+++||.... ..
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~--~~f----------~l~~--~~~k~i~l~Ee~~~~------~d 162 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTN--ENF----------PFND--CVDKMVIWWEEGKMT------AK 162 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTC--SSC----------TTGG--GSSCSEEEECSCCEE------TT
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccc--ccc----------cccc--ccccEEEEeccccch------hH
Confidence 357999999999999999999998654 22222211 000 1111 123356667776543 11
Q ss_pred hHHHHHHHHHHHHHhhcCCcc--cCCCCEEEEEecCC-C----------CCCcHHHHhccCcEEEec--------CCCHH
Q 001031 1064 EHEAMRKMKNEFMVNWDGLRT--KDKERVLVLAATNR-P----------FDLDEAVVRRLPRRLMVN--------LPDAP 1122 (1183)
Q Consensus 1064 ~~e~l~~il~~LL~~Ldgl~~--k~~~~VlVIaTTN~-p----------~~Ld~aLlrRFd~vI~I~--------lPd~e 1122 (1183)
....++.++.--...++.... ..-.+..+|.|||. + +...+.|.+|+ ..+.+. ..+.+
T Consensus 163 ~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~-~~f~F~~~~p~~~~~lt~~ 241 (267)
T 1u0j_A 163 VVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRM-FKFELTRRLDHDFGKVTKQ 241 (267)
T ss_dssp THHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTE-EEEECCSCCCTTSCCCCHH
T ss_pred HHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhE-EEEECCCcCCcccCCCCHH
Confidence 223333322100000110000 01134566777775 1 24557899987 667776 56677
Q ss_pred HHHHHHHHH
Q 001031 1123 NREKIIRVI 1131 (1183)
Q Consensus 1123 eR~eILk~i 1131 (1183)
+...+|+..
T Consensus 242 ~~~~f~~w~ 250 (267)
T 1u0j_A 242 EVKDFFRWA 250 (267)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888754
No 171
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.82 E-value=4.4e-05 Score=84.09 Aligned_cols=42 Identities=19% Similarity=0.165 Sum_probs=33.9
Q ss_pred CCEEEEEcChhhhhcC------ChhhHHHHHHHHhcCCCCEEEEEecc
Q 001031 704 SPLIVFVKDIEKSLTG------NNDAYGALKSKLENLPSNVVVIGSHT 745 (1183)
Q Consensus 704 ~P~Ilf~~Die~~l~~------~~~~~~~i~~~L~~L~g~vivIgs~~ 745 (1183)
.+-||||+|+|.++.. ..+..+.|...|+.-..+++||+++|
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~ 177 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGY 177 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEEC
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 3569999999997632 56677778888888788999999998
No 172
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=97.76 E-value=5.7e-05 Score=84.53 Aligned_cols=81 Identities=20% Similarity=0.202 Sum_probs=61.6
Q ss_pred ceeeecceeEEccCCccc---eeecCCCCCccceEEEEee-------cCCcceEEEEEe-cCCceEEEcCeecCCCceEE
Q 001031 146 HLSMTGAVFTVGHNRQCD---LYLKDPSISKNLCRLRRIE-------NGGPSGALLEIT-GGKGEVEVNGNVHPKDSQVV 214 (1183)
Q Consensus 146 ~~~i~~~~~t~G~~~~cd---~~l~d~~~s~~~c~l~~~~-------~~g~~~a~le~~-~~~G~v~vNg~~~~k~~~~~ 214 (1183)
.+.+....|+|||...++ +.++|+++|..|+.|+-.. ..+....+|+|. |.||| +|||+++. ++++.
T Consensus 15 r~~L~pg~YlIGR~~~~~~~lI~idD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~DLgSknGT-fVNGerI~-~~~~~ 92 (325)
T 3huf_A 15 SRILFPGTYIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDTKFGT-KVNEKVVG-QNGDS 92 (325)
T ss_dssp CEEECSEEEEEESSCCCBTTEEECCCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEECSCSSCE-EETTEECC-TTCEE
T ss_pred EEEecCCeEEECCCCCccCceeecCCCCccccceEEEEecccccccccCCcceEEEEECCCCCCE-EECCEECC-Cceee
Confidence 344566669999976633 5889999999999997531 122445889996 66799 69999995 55677
Q ss_pred ee-CCCEEEEccCCC
Q 001031 215 LR-GGDELVFSPSGK 228 (1183)
Q Consensus 215 L~-~gDev~f~~~~~ 228 (1183)
|. .||+|.|+....
T Consensus 93 L~~dgd~I~fG~~~~ 107 (325)
T 3huf_A 93 YKEKDLKIQLGKCPF 107 (325)
T ss_dssp ECSSEEEEEETTCSS
T ss_pred ecCCCCEEEecCCcc
Confidence 75 699999998755
No 173
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.74 E-value=4.4e-06 Score=76.06 Aligned_cols=52 Identities=25% Similarity=0.317 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHHhHHHH
Q 001031 1122 PNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHCPIREI 1173 (1183)
Q Consensus 1122 eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~Aire~ 1173 (1183)
++|.+||+.++.+..+..++++..||..|+||||+||.++|++|++.|+++.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~ 52 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN 52 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999888888999999999999999999999999999999874
No 174
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.74 E-value=1.5e-05 Score=72.55 Aligned_cols=67 Identities=16% Similarity=0.079 Sum_probs=43.4
Q ss_pred hhccchhHHHHHhhhCCC-CcccchhhhcccCCCCHHHHHHHHhhhhhhHhhhccCCCCCCCcceecccchhhhHHHHHh
Q 001031 831 KGQSNIISIRSVLSRNGL-DCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMHCSEAPGKDAKLKISTESIMYGLNILQG 909 (1183)
Q Consensus 831 ~gR~~Il~IHT~l~~~~l-~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r~~~~i~~~~kl~Id~~sIkv~~~dF~~ 909 (1183)
++|.+|+++|+... ++ ++++++.||..|.||+||||+.+|++|+..++.+.. ..+...||+.
T Consensus 1 ~~R~~Il~~~l~~~--~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~---------------~~i~~~df~~ 63 (82)
T 2dzn_B 1 MERRLIFGTIASKM--SLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR---------------YVILQSDLEE 63 (82)
T ss_dssp -------------C--EECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC---------------SEECHHHHHH
T ss_pred CHHHHHHHHHHcCC--CCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc---------------CCcCHHHHHH
Confidence 46899999997622 23 678999999999999999999999999999998632 1356778887
Q ss_pred hhhhh
Q 001031 910 IQSES 914 (1183)
Q Consensus 910 al~ei 914 (1183)
++..+
T Consensus 64 Al~~v 68 (82)
T 2dzn_B 64 AYATQ 68 (82)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 76665
No 175
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.73 E-value=5.6e-05 Score=102.19 Aligned_cols=77 Identities=25% Similarity=0.289 Sum_probs=59.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc----cc------------cccchHHHHHHHHHHHhc
Q 001031 981 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT----SK------------WFGEGEKYVKAVFSLASK 1041 (1183)
Q Consensus 981 ~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~----s~------------~~GesE~~Ir~lF~~A~k 1041 (1183)
..+..+++|+||||||||+||.+++.+. |..+..++..... .. .....++.++.++..++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 3456789999999999999999998776 5667777655422 11 123456788888888898
Q ss_pred cCCeEEEEeCCccccc
Q 001031 1042 IAPSVVFVDEVDSMLG 1057 (1183)
Q Consensus 1042 ~~PsILfIDEID~Ll~ 1057 (1183)
..|++||||+++.+.+
T Consensus 1504 ~~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTP 1519 (2050)
T ss_dssp TCCSEEEESCGGGCCC
T ss_pred CCCCEEEEcChhHhcc
Confidence 9999999999998875
No 176
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.66 E-value=2.8e-05 Score=91.71 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=53.7
Q ss_pred hhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecCCCCC
Q 001031 462 DITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLPG 532 (1183)
Q Consensus 462 e~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs~~~~g 532 (1183)
++.|..|..|.+-|+++..+....+ .....+.|||.||+| .-..+||||||+.++++++.+|.+.+..
T Consensus 21 e~ak~~l~~av~~~~~r~~~~~~~~-~~~~~~~iLl~GppG--tGKT~lar~lA~~l~~~~~~v~~~~~~~ 88 (444)
T 1g41_A 21 ADAKRAVAIALRNRWRRMQLQEPLR-HEVTPKNILMIGPTG--VGKTEIARRLAKLANAPFIKVEATKFTE 88 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTT-TTCCCCCEEEECCTT--SSHHHHHHHHHHHTTCCEEEEEGGGGC-
T ss_pred HHHHHHHHHHHHHHHhhhccccccc-cccCCceEEEEcCCC--CCHHHHHHHHHHHcCCCceeecchhhcc
Confidence 8899999999998887765532211 112346799999999 6899999999999999999999877654
No 177
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.62 E-value=0.00074 Score=76.02 Aligned_cols=157 Identities=13% Similarity=0.109 Sum_probs=98.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CC-cEEEEecCccccccccchHHHHHHHHHHHh----ccCCeEEEEeCCcc-c
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GA-NFINISMSSITSKWFGEGEKYVKAVFSLAS----KIAPSVVFVDEVDS-M 1055 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~-pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~----k~~PsILfIDEID~-L 1055 (1183)
+.+||+||+|.||+..+++|++.+ ++ ++..+... + +..++.++..+. .....||+|||+|. +
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~------~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl 89 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---P------NTDWNAIFSLCQAMSLFASRQTLLLLLPENGP 89 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---T------TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCC
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---C------CCCHHHHHHHhcCcCCccCCeEEEEECCCCCC
Confidence 579999999999999999998875 33 22222111 1 012334443332 33457999999997 6
Q ss_pred ccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCC-----CCCCcHHHHhccCcEEEecCCCHHHHHHHHHH
Q 001031 1056 LGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR-----PFDLDEAVVRRLPRRLMVNLPDAPNREKIIRV 1130 (1183)
Q Consensus 1056 l~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~-----p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~ 1130 (1183)
. .. ..+.|+..+...+ ...++|+++++. ...+.+++.+|+ .++.+..++..+....++.
T Consensus 90 ~-----~~-------~~~aLl~~le~p~---~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 90 N-----AA-------INEQLLTLTGLLH---DDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp C-----TT-------HHHHHHHHHTTCB---TTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHHHH
T ss_pred C-----hH-------HHHHHHHHHhcCC---CCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHHH
Confidence 1 11 2233444444322 233444444432 245667888888 7899999999999999999
Q ss_pred HHhhccCC-ChhhHHHHHHHcCCCcHHHHHHHHHHHHH
Q 001031 1131 ILAKEELA-SDVDLEGIANMADGYSGSDLKNLCVTAAH 1167 (1183)
Q Consensus 1131 iL~k~~l~-~didl~~LA~~TeGySg~DL~~L~~~Aa~ 1167 (1183)
.+...++. ++..+..|+..+.| ..+++.+.++..+.
T Consensus 154 ~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l 190 (343)
T 1jr3_D 154 RAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSL 190 (343)
T ss_dssp HHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHH
Confidence 98877654 45557777777765 44555555554443
No 178
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=97.61 E-value=0.00015 Score=71.15 Aligned_cols=77 Identities=21% Similarity=0.206 Sum_probs=64.0
Q ss_pred CCCCceeeecceeEEccCC-ccceeecCCCCCccceEEEEeecCCcceEEEEEecCCceEEEcCeecCCCceEEeeCCCE
Q 001031 142 SQNSHLSMTGAVFTVGHNR-QCDLYLKDPSISKNLCRLRRIENGGPSGALLEITGGKGEVEVNGNVHPKDSQVVLRGGDE 220 (1183)
Q Consensus 142 ~~~p~~~i~~~~~t~G~~~-~cd~~l~d~~~s~~~c~l~~~~~~g~~~a~le~~~~~G~v~vNg~~~~k~~~~~L~~gDe 220 (1183)
-.--.+++....|+||.+. .|||.|.|+.++..||.|...+++ .+|. -+.||+ ||||..+.-+. .|..|+-
T Consensus 14 ~~G~~l~L~~~~~~IGs~~~~~DLvL~D~~Vs~~H~~L~~~~~g----~~L~-~s~ngt-~vdG~~v~~~~--~L~~g~~ 85 (123)
T 4a0e_A 14 HRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEG----IRLT-DSAEPL-LQEGLPVPLGT--LLRAGSC 85 (123)
T ss_dssp GTTCEEEECSEEEEEESCTTTCSEECCCTTSCSSCEEEEEETTE----EEEE-EESSCC-EETTEECCTTC--BCCTTSC
T ss_pred CCCcEEEcCCCcEEECCCCCCCCEEEeCCCccceeEEEEECCCe----EEEE-eccCCE-EECCEEccccc--ccCCCCE
Confidence 3444788999999999999 999999999999999999987655 6665 666777 79999988765 8999998
Q ss_pred EEEccC
Q 001031 221 LVFSPS 226 (1183)
Q Consensus 221 v~f~~~ 226 (1183)
+.++..
T Consensus 86 l~lG~~ 91 (123)
T 4a0e_A 86 LEVGFL 91 (123)
T ss_dssp EEETTE
T ss_pred EEEccE
Confidence 877544
No 179
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.59 E-value=0.00042 Score=71.72 Aligned_cols=27 Identities=37% Similarity=0.639 Sum_probs=23.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANF 1012 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pf 1012 (1183)
.+.|.||+|+|||||++.|+..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 578999999999999999999886544
No 180
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.58 E-value=9.8e-05 Score=83.36 Aligned_cols=140 Identities=11% Similarity=0.043 Sum_probs=80.9
Q ss_pred HHHHHHHHHhhccCC--CCEEEEEcChhhhhcCChhhHHHHHHHHhcCCCCEEEEEeccCCCcccccCCCCCceeeccCc
Q 001031 689 AINELFEVALNESKS--SPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGS 766 (1183)
Q Consensus 689 ~~~~l~evl~s~~~~--~P~Ilf~~Die~~l~~~~~~~~~i~~~L~~L~g~vivIgs~~~~d~~k~k~~~~~~~~~~~~~ 766 (1183)
.++.....+....+. .|-||||||++.+- .+..+.+-..++....++++|++.+.. .++...
T Consensus 172 ~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~---~~~~~~L~~~le~~~~~~~ii~t~~~~-----------~~i~~t-- 235 (368)
T 3uk6_A 172 QINAKVAEWREEGKAEIIPGVLFIDEVHMLD---IESFSFLNRALESDMAPVLIMATNRGI-----------TRIRGT-- 235 (368)
T ss_dssp HHHHHHHHHHHHTC---CBCEEEEESGGGSB---HHHHHHHHHHTTCTTCCEEEEEESCSE-----------EECBTS--
T ss_pred HHHHHHHHhhhhccccccCceEEEhhccccC---hHHHHHHHHHhhCcCCCeeeeecccce-----------eeeecc--
Confidence 344444433333332 38899999999852 456666777788777788888776510 000000
Q ss_pred chhhhccccCCCCccccccccccchHHHHHhhhhCCCeEEecCCchhHHHHHHHHHHhhhhhhhhhccchhHHHHHhhhC
Q 001031 767 NQTALLDLAFPDNFSRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKGQSNIISIRSVLSRN 846 (1183)
Q Consensus 767 ~~~~~~d~~~PD~~d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRferq~e~~Lpd~~gR~~Il~IHT~l~~~ 846 (1183)
....|+.+++ .|-.+|.. |.+++|.++.+...+...+. ....
T Consensus 236 ------~~~~~~~l~~-------------~l~sR~~~-i~~~~~~~~e~~~il~~~~~------------------~~~~ 277 (368)
T 3uk6_A 236 ------SYQSPHGIPI-------------DLLDRLLI-VSTTPYSEKDTKQILRIRCE------------------EEDV 277 (368)
T ss_dssp ------SCEEETTCCH-------------HHHTTEEE-EEECCCCHHHHHHHHHHHHH------------------HTTC
T ss_pred ------CCCCcccCCH-------------HHHhhccE-EEecCCCHHHHHHHHHHHHH------------------HcCC
Confidence 0001233332 33444433 67777766666543332211 1122
Q ss_pred CCCcccchhhhcccCCCCHHHHHHHHhhhhhhHhhh
Q 001031 847 GLDCVDLESLCIKDQTLTTEGVEKIVGWALSHHFMH 882 (1183)
Q Consensus 847 ~l~~vdL~~LA~~tkgfsgAdIe~Lv~~A~s~al~r 882 (1183)
.+++..++.|+..+.+.+..++..+|..|...|..+
T Consensus 278 ~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~ 313 (368)
T 3uk6_A 278 EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR 313 (368)
T ss_dssp CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 356667777888777677889999999998888653
No 181
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=97.54 E-value=0.00011 Score=79.99 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=50.3
Q ss_pred cceeEEccCCccceeecCCCCCccceEEEEeecC--CcceEEEEEec-CCceEEEcCeecCCCceEEee-CCCEEEE
Q 001031 151 GAVFTVGHNRQCDLYLKDPSISKNLCRLRRIENG--GPSGALLEITG-GKGEVEVNGNVHPKDSQVVLR-GGDELVF 223 (1183)
Q Consensus 151 ~~~~t~G~~~~cd~~l~d~~~s~~~c~l~~~~~~--g~~~a~le~~~-~~G~v~vNg~~~~k~~~~~L~-~gDev~f 223 (1183)
...+||||+..||+.++|+ ++ .+.++.. ++ |. .+||+.+ +||+|||||+++... ..|+ .||+|.|
T Consensus 91 ~~~itIG~~~~~dI~l~~~--~~-~~~~~~~-~~~~~~--~~l~~l~s~ngtvyvNg~~i~~~--~~L~~~GD~I~i 159 (238)
T 1wv3_A 91 QDTMTIGPNAYDDMVIQSL--MN-AIIIKDF-QSIQES--QYVRIVHDKNTDVYINYELQEQL--TNKAYIGDHIYV 159 (238)
T ss_dssp CSEEEEESSTTSSEECTTC--SS-CEEEECG-GGHHHH--CEEEEECCTTCCEEETTEECCSS--EEEEETTCEEEE
T ss_pred CceEEEeCCCCCeEEeCCC--ee-EEEEecc-cCcCCc--EEEEEccCCCCCEEECCEEeccc--eeccCCcCEEEE
Confidence 3499999999999999998 33 3444432 11 23 5789987 889999999999654 4799 9999988
No 182
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.38 E-value=0.00013 Score=79.30 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=30.5
Q ss_pred CCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001031 490 TMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1183)
Q Consensus 490 ~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs 527 (1183)
...+.|||.||+| ....+||+|+|+..+.+++.++.
T Consensus 62 ~~~~~vLl~G~~G--tGKT~la~~ia~~~~~~~~~i~~ 97 (272)
T 1d2n_A 62 TPLVSVLLEGPPH--SGKTALAAKIAEESNFPFIKICS 97 (272)
T ss_dssp CSEEEEEEECSTT--SSHHHHHHHHHHHHTCSEEEEEC
T ss_pred CCCeEEEEECCCC--CcHHHHHHHHHHHhCCCEEEEeC
Confidence 3456899999999 78999999999998888777764
No 183
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.27 E-value=0.00016 Score=87.22 Aligned_cols=35 Identities=29% Similarity=0.549 Sum_probs=30.3
Q ss_pred CCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001031 491 MCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1183)
Q Consensus 491 ~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs 527 (1183)
..+-+||.||+| ....+|||+||+.++.++.-++.
T Consensus 107 ~g~~vll~Gp~G--tGKTtlar~ia~~l~~~~~~i~~ 141 (543)
T 3m6a_A 107 KGPILCLAGPPG--VGKTSLAKSIAKSLGRKFVRISL 141 (543)
T ss_dssp CSCEEEEESSSS--SSHHHHHHHHHHHHTCEEEEECC
T ss_pred CCCEEEEECCCC--CCHHHHHHHHHHhcCCCeEEEEe
Confidence 466799999999 78999999999999888777663
No 184
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.17 E-value=0.0023 Score=66.39 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=30.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~ 1019 (1183)
+..-++|+||||+|||+|+..++...+.+++.++...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4456899999999999999999986677888887654
No 185
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.13 E-value=0.0031 Score=65.63 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~ 1017 (1183)
+..-++|+||+|+|||+|++.++..+ +..++.++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 33568999999999999999998654 556666553
No 186
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.12 E-value=0.0076 Score=65.12 Aligned_cols=160 Identities=19% Similarity=0.240 Sum_probs=85.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc--------ccccc----------ccc--hHHHHHHHHHHHhc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS--------ITSKW----------FGE--GEKYVKAVFSLASK 1041 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~--------L~s~~----------~Ge--sE~~Ir~lF~~A~k 1041 (1183)
..|++.|+||+|||+++-.+|..+ |..++.++... +.... .+. .+..+..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~---- 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK---- 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH----
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh----
Confidence 469999999999999999998876 77776655421 11110 000 1122333222
Q ss_pred cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCC------------------CCCCc
Q 001031 1042 IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNR------------------PFDLD 1103 (1183)
Q Consensus 1042 ~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~------------------p~~Ld 1103 (1183)
..|.+|+|||+-..-.. . .........+..++ . ..+=|++|+|- .+.++
T Consensus 83 ~~pdlvIVDElG~~~~~-~--~r~~~~~qDV~~~l---~-------sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vp 149 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAP-G--SRHTKRWQDIQELL---A-------AGIDVYTTVNVQHLESLNDQVRGITGVQVRETLP 149 (228)
T ss_dssp HCCSEEEESCTTCBCCT-T--CSSSBHHHHHHHHH---H-------TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBC
T ss_pred cCCCEEEEeCCCCCCcc-c--chhHHHHHHHHHHH---c-------CCCCEEEEccccccccHHHHHHHHcCCCcCCcCc
Confidence 36899999998654111 0 01111111122221 1 33556666662 25677
Q ss_pred HHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 001031 1104 EAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSDLKNLCVTAAHC 1168 (1183)
Q Consensus 1104 ~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~DL~~L~~~Aa~~ 1168 (1183)
+.++++.+.+..+++|..+- ++.+-...-+..+..-..+... |+...|..|-.-|...
T Consensus 150 d~~~~~a~~v~lvD~~p~~l----~~rl~~g~vy~~~~~~~a~~~~---f~~~nl~~lrelal~~ 207 (228)
T 2r8r_A 150 DWVLQEAFDLVLIDLPPREL----LERLRDGKVYVPEQARAAIDAF---FTQTNLTALREMAMQT 207 (228)
T ss_dssp HHHHHTCSEEEEBCCCHHHH----HHHHHTTCCCCTTCCHHHHHHH---CCHHHHHHHHHHHHHH
T ss_pred cHHHhhCCeEEEecCCHHHH----HHHHHCCCccChhHHHHHHHhh---hchhhHHHHHHHHHHH
Confidence 78888888888888887653 3333222222222222333333 5666676665544443
No 187
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.08 E-value=0.0029 Score=72.89 Aligned_cols=75 Identities=27% Similarity=0.314 Sum_probs=50.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc----c------------cchHHHHHHHHHHHhccC
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW----F------------GEGEKYVKAVFSLASKIA 1043 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~----~------------GesE~~Ir~lF~~A~k~~ 1043 (1183)
+..-++|+||||+|||+||..+|..+ +.+++.++...-...+ . ...+..+..+....+...
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~ 152 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGA 152 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCC
Confidence 34568999999999999999988764 6788888765422111 0 122333333333444567
Q ss_pred CeEEEEeCCccccc
Q 001031 1044 PSVVFVDEVDSMLG 1057 (1183)
Q Consensus 1044 PsILfIDEID~Ll~ 1057 (1183)
+.+|+||.+..|.+
T Consensus 153 ~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 153 IDVVVVDSVAALTP 166 (366)
T ss_dssp CSEEEEECTTTCCC
T ss_pred CCEEEEeChHHhcc
Confidence 89999999999974
No 188
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.07 E-value=0.0057 Score=73.54 Aligned_cols=173 Identities=13% Similarity=0.072 Sum_probs=96.4
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH-----hCC--cEEEEecCcc-
Q 001031 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE-----AGA--NFINISMSSI- 1020 (1183)
Q Consensus 949 dDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~e-----Lg~--pfi~I~~s~L- 1020 (1183)
..++|.+...+.|.+.+... ....+-|+|+|++|+|||+||..+++. -.+ .++.++....
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~ 191 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL------------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD 191 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS------------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC
T ss_pred CeecccHHHHHHHHHHHhcc------------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCc
Confidence 46899999999998877520 112356999999999999999998642 122 2333332221
Q ss_pred ----cccc------c-----------cchHHHHHHHHHHHh-ccCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHh
Q 001031 1021 ----TSKW------F-----------GEGEKYVKAVFSLAS-KIAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1078 (1183)
Q Consensus 1021 ----~s~~------~-----------GesE~~Ir~lF~~A~-k~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~ 1078 (1183)
.... . ...+.....+..... +..|.+|+|||++.. . .+..
T Consensus 192 ~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~----------~--------~l~~ 253 (591)
T 1z6t_A 192 KSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----------W--------VLKA 253 (591)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH----------H--------HHHT
T ss_pred hHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH----------H--------HHHH
Confidence 0000 0 011112222222222 236899999999742 0 1111
Q ss_pred hcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEec---CCCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcH
Q 001031 1079 WDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVN---LPDAPNREKIIRVILAKEELASDVDLEGIANMADGYSG 1155 (1183)
Q Consensus 1079 Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~---lPd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg 1155 (1183)
+ .....||.||........ . + ...+.+. ..+.++-.++|.................|++.+.|. +
T Consensus 254 ---l----~~~~~ilvTsR~~~~~~~-~--~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~-P 321 (591)
T 1z6t_A 254 ---F----DSQCQILLTTRDKSVTDS-V--M-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGS-P 321 (591)
T ss_dssp ---T----CSSCEEEEEESCGGGGTT-C--C-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTC-H
T ss_pred ---h----cCCCeEEEECCCcHHHHh-c--C-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCC-c
Confidence 1 134577778865432111 0 0 2334443 578888888888876542111234568899999875 4
Q ss_pred HHHHHHHH
Q 001031 1156 SDLKNLCV 1163 (1183)
Q Consensus 1156 ~DL~~L~~ 1163 (1183)
..|+.+..
T Consensus 322 Lal~~~a~ 329 (591)
T 1z6t_A 322 LVVSLIGA 329 (591)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 189
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.00 E-value=0.0021 Score=67.76 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=48.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH--h-------CCcEEEEecCccccc--------ccc----------------chH
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATE--A-------GANFINISMSSITSK--------WFG----------------EGE 1029 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~e--L-------g~pfi~I~~s~L~s~--------~~G----------------esE 1029 (1183)
+..-++|+||+|+|||+|++.++.. + +...+.++....... .++ ..+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 3356899999999999999999985 2 456777775441000 000 011
Q ss_pred ---HHHHHHHHHHhccCCeEEEEeCCccccc
Q 001031 1030 ---KYVKAVFSLASKIAPSVVFVDEVDSMLG 1057 (1183)
Q Consensus 1030 ---~~Ir~lF~~A~k~~PsILfIDEID~Ll~ 1057 (1183)
..+..+...+....|.+|+||++..++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 1223344445556899999999998864
No 190
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.95 E-value=0.00026 Score=83.92 Aligned_cols=47 Identities=21% Similarity=0.371 Sum_probs=28.1
Q ss_pred HHHHHHHHhhccCCCCEEEEEcChhhhhcCChhhHHHHHHHHhcCCCCEEEEEeccCCC
Q 001031 690 INELFEVALNESKSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHTQLD 748 (1183)
Q Consensus 690 ~~~l~evl~s~~~~~P~Ilf~~Die~~l~~~~~~~~~i~~~L~~L~g~vivIgs~~~~d 748 (1183)
+..+|+.+.. .+|.||||| +..+..+.|...|+ .|++.|||+||..+
T Consensus 256 ~~~~~~~~~~---~~~~iLfiD-------~~~~a~~~L~~~L~--~g~v~vI~at~~~e 302 (468)
T 3pxg_A 256 LKKVMDEIRQ---AGNIILFID-------AAIDASNILKPSLA--RGELQCIGATTLDE 302 (468)
T ss_dssp HHHHHHHHHT---CCCCEEEEC-------C--------CCCTT--SSSCEEEEECCTTT
T ss_pred HHHHHHHHHh---cCCeEEEEe-------CchhHHHHHHHhhc--CCCEEEEecCCHHH
Confidence 4555555544 689999999 44555555555554 78999999999533
No 191
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.95 E-value=0.0033 Score=71.83 Aligned_cols=74 Identities=23% Similarity=0.326 Sum_probs=50.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc----ccc------------chHHHHHHHHHHHhccC
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----WFG------------EGEKYVKAVFSLASKIA 1043 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~----~~G------------esE~~Ir~lF~~A~k~~ 1043 (1183)
+..-++|+||||+|||+|+..++... +..++.++....... ..| ..+..+..+...+....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGA 139 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCC
Confidence 44569999999999999999998654 667777775432111 011 12333333444455667
Q ss_pred CeEEEEeCCcccc
Q 001031 1044 PSVVFVDEVDSML 1056 (1183)
Q Consensus 1044 PsILfIDEID~Ll 1056 (1183)
|.+|+||++..++
T Consensus 140 ~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 140 LDIIVIDSVAALV 152 (349)
T ss_dssp CSEEEEECGGGCC
T ss_pred CCEEEEcChHhhc
Confidence 9999999999986
No 192
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.91 E-value=0.0032 Score=72.28 Aligned_cols=75 Identities=24% Similarity=0.260 Sum_probs=50.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc----------------cccchHHHHHHHHHHHhccC
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----------------WFGEGEKYVKAVFSLASKIA 1043 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~----------------~~GesE~~Ir~lF~~A~k~~ 1043 (1183)
+..-++|+||||+|||+|+..++..+ +..+++++....... .....+..+..+....+...
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGV 139 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcC
Confidence 34558999999999999999998775 667777776542110 01122333333333444567
Q ss_pred CeEEEEeCCccccc
Q 001031 1044 PSVVFVDEVDSMLG 1057 (1183)
Q Consensus 1044 PsILfIDEID~Ll~ 1057 (1183)
+.+++||.+..+++
T Consensus 140 ~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 140 VDLIVVDSVAALVP 153 (356)
T ss_dssp CSEEEEECTTTCCC
T ss_pred CCeEEehHhhhhcC
Confidence 89999999998874
No 193
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.89 E-value=0.00026 Score=81.92 Aligned_cols=64 Identities=27% Similarity=0.369 Sum_probs=43.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCccccccccchHHHHHHHHHHHhccCCeEEEEeCCccccc
Q 001031 982 KPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVVFVDEVDSMLG 1057 (1183)
Q Consensus 982 kP~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L~s~~~GesE~~Ir~lF~~A~k~~PsILfIDEID~Ll~ 1057 (1183)
.+...++|+||+|+|||+|+++++..++..++.+..+.- . . -|....-.+..++++||++.+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~--~--------~--~~~lg~~~q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD--R--------L--NFELGVAIDQFLVVFEDVKGTGG 230 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT--T--------H--HHHHGGGTTCSCEEETTCCCSTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch--h--------H--HHHHHHhcchhHHHHHHHHHHHH
Confidence 344679999999999999999999998776655332220 0 0 01112223446789999998754
No 194
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.82 E-value=0.00094 Score=69.37 Aligned_cols=30 Identities=17% Similarity=0.069 Sum_probs=22.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEA---GANFINI 1015 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I 1015 (1183)
-++++||+|+|||+++..++..+ +..++.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 47899999999999987666554 5555444
No 195
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.78 E-value=0.0019 Score=65.14 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=30.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s 1018 (1183)
.-|+|.|+||+|||+++++++..++.+++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 4699999999999999999999999998876643
No 196
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.77 E-value=0.015 Score=75.11 Aligned_cols=174 Identities=10% Similarity=0.059 Sum_probs=100.0
Q ss_pred ccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---C--Cc--EEEEecCccc
Q 001031 949 DDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---G--AN--FINISMSSIT 1021 (1183)
Q Consensus 949 dDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g--~p--fi~I~~s~L~ 1021 (1183)
..++|.+...+.|.+.+... ....+-|.|+|+.|+|||+||+.+++.. . ++ ++.++.+...
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~------------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL------------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT------------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred ceeccHHHHHHHHHHHHhhc------------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 36899999999999877521 1123468999999999999999987652 1 22 3344433210
Q ss_pred c------------c---------cccchHHHHHHHHHHHhc--cCCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHh
Q 001031 1022 S------------K---------WFGEGEKYVKAVFSLASK--IAPSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVN 1078 (1183)
Q Consensus 1022 s------------~---------~~GesE~~Ir~lF~~A~k--~~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~ 1078 (1183)
. . ........+...+..... .++.+|+||+++.. . .
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~----------~-----------~ 250 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----------W-----------V 250 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH----------H-----------H
T ss_pred chHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH----------H-----------H
Confidence 0 0 000111222222322222 33789999999743 0 1
Q ss_pred hcCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecC-CCHHHHHHHHHHHHhhccCCChhhHHHHHHHcCCCcHHH
Q 001031 1079 WDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNL-PDAPNREKIIRVILAKEELASDVDLEGIANMADGYSGSD 1157 (1183)
Q Consensus 1079 Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~l-Pd~eeR~eILk~iL~k~~l~~didl~~LA~~TeGySg~D 1157 (1183)
+..+ .....||.||......... ......+.+.. .+.++-.++|..+.....-.......+|++.+.|. +-.
T Consensus 251 ~~~~----~~~~~ilvTtR~~~~~~~~--~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl-PLa 323 (1249)
T 3sfz_A 251 LKAF----DNQCQILLTTRDKSVTDSV--MGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS-PLV 323 (1249)
T ss_dssp HTTT----CSSCEEEEEESSTTTTTTC--CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC-HHH
T ss_pred HHhh----cCCCEEEEEcCCHHHHHhh--cCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC-HHH
Confidence 1222 1345788888765432110 11224577775 78888888888776433222233477899999875 555
Q ss_pred HHHHH
Q 001031 1158 LKNLC 1162 (1183)
Q Consensus 1158 L~~L~ 1162 (1183)
|+.+.
T Consensus 324 l~~~~ 328 (1249)
T 3sfz_A 324 VSLIG 328 (1249)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 197
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.61 E-value=0.001 Score=67.59 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=29.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
...|+|.|++|+|||++++.+|..++++++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 357999999999999999999999999988654
No 198
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.60 E-value=0.008 Score=68.94 Aligned_cols=75 Identities=27% Similarity=0.339 Sum_probs=49.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc----ccc------------chHHHHHHHHHHHhccC
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK----WFG------------EGEKYVKAVFSLASKIA 1043 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~----~~G------------esE~~Ir~lF~~A~k~~ 1043 (1183)
+..-++|+|+||+|||+||..+|..+ +.+++.++....... ..| ..+.....+-..++...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~ 141 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 141 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccC
Confidence 34569999999999999999998764 677888886432111 001 11222222222334567
Q ss_pred CeEEEEeCCccccc
Q 001031 1044 PSVVFVDEVDSMLG 1057 (1183)
Q Consensus 1044 PsILfIDEID~Ll~ 1057 (1183)
+.+|+||.+..|..
T Consensus 142 ~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 142 VDVIVVDSVAALTP 155 (356)
T ss_dssp CSEEEEECGGGCCC
T ss_pred CCEEEEcCHHHhcc
Confidence 89999999998863
No 199
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.58 E-value=0.0074 Score=67.32 Aligned_cols=62 Identities=27% Similarity=0.319 Sum_probs=41.9
Q ss_pred ccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001031 452 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1183)
Q Consensus 452 sfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs 527 (1183)
+|++|-.. +..+..|..+.....+.. ...+.|||.||+| ...++||+++|+.++.++..++.
T Consensus 27 ~~~~iiG~--~~~~~~l~~~l~~~~~~~----------~~~~~vll~G~~G--tGKT~la~~ia~~~~~~~~~~~~ 88 (338)
T 3pfi_A 27 NFDGYIGQ--ESIKKNLNVFIAAAKKRN----------ECLDHILFSGPAG--LGKTTLANIISYEMSANIKTTAA 88 (338)
T ss_dssp SGGGCCSC--HHHHHHHHHHHHHHHHTT----------SCCCCEEEECSTT--SSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CHHHhCCh--HHHHHHHHHHHHHHHhcC----------CCCCeEEEECcCC--CCHHHHHHHHHHHhCCCeEEecc
Confidence 57766433 666666665544222111 1234699999999 79999999999998877666554
No 200
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.57 E-value=0.0066 Score=68.97 Aligned_cols=75 Identities=20% Similarity=0.240 Sum_probs=49.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCcccc-c-------ccc----------------chH
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITS-K-------WFG----------------EGE 1029 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---------g~pfi~I~~s~L~s-~-------~~G----------------esE 1029 (1183)
+..-++|+||||+|||+|+..+|... +..+++++....+. . .+| ..+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e 200 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSE 200 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHH
Confidence 43558999999999999999999873 45677777654211 0 000 011
Q ss_pred ---HHHHHHHHHHhc--cCCeEEEEeCCccccc
Q 001031 1030 ---KYVKAVFSLASK--IAPSVVFVDEVDSMLG 1057 (1183)
Q Consensus 1030 ---~~Ir~lF~~A~k--~~PsILfIDEID~Ll~ 1057 (1183)
..+..+...+.. ..+.+|+||.+..++.
T Consensus 201 ~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 201 HQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp HHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 122233344555 6789999999999874
No 201
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.53 E-value=0.014 Score=62.76 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=43.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc-------cccccccch-----HHHHHHHHHHHhc----cCCe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS-------ITSKWFGEG-----EKYVKAVFSLASK----IAPS 1045 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~-------L~s~~~Ges-----E~~Ir~lF~~A~k----~~Ps 1045 (1183)
.-++++||+|+|||+++..++..+ +..++.+.... +.+. .|-. ......++..+.. ..+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 348999999999999888887766 55666553211 1111 1110 0112345555544 3578
Q ss_pred EEEEeCCccc
Q 001031 1046 VVFVDEVDSM 1055 (1183)
Q Consensus 1046 ILfIDEID~L 1055 (1183)
+|+|||+..+
T Consensus 92 vViIDEaQ~l 101 (223)
T 2b8t_A 92 VIGIDEVQFF 101 (223)
T ss_dssp EEEECSGGGS
T ss_pred EEEEecCccC
Confidence 9999999865
No 202
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.49 E-value=0.0044 Score=69.71 Aligned_cols=75 Identities=23% Similarity=0.290 Sum_probs=50.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCccc-cc-------ccc----------------chH
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSIT-SK-------WFG----------------EGE 1029 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---------g~pfi~I~~s~L~-s~-------~~G----------------esE 1029 (1183)
+..-++|+||||+|||+|+..+|... +..+++++....+ .. .+| ..+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 34569999999999999999999875 4567777765421 00 000 111
Q ss_pred ---HHHHHHHHHHhc-cCCeEEEEeCCccccc
Q 001031 1030 ---KYVKAVFSLASK-IAPSVVFVDEVDSMLG 1057 (1183)
Q Consensus 1030 ---~~Ir~lF~~A~k-~~PsILfIDEID~Ll~ 1057 (1183)
..+..+...... ..+.+|+||.+..++.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 123344445555 6789999999998863
No 203
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.47 E-value=0.0046 Score=67.46 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=48.2
Q ss_pred hhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecCCCC
Q 001031 462 DITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLLP 531 (1183)
Q Consensus 462 e~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs~~~~ 531 (1183)
++.+..|..+..-|++...+..-.+ -....+.|||.||+| ....+|||+||+.++.+++.+|...+.
T Consensus 21 ~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~vll~G~~G--tGKT~la~~la~~l~~~~~~i~~~~~~ 87 (310)
T 1ofh_A 21 ADAKRAVAIALRNRWRRMQLQEPLR-HEVTPKNILMIGPTG--VGKTEIARRLAKLANAPFIKVEATKFT 87 (310)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCHHHH-HHCCCCCEEEECCTT--SSHHHHHHHHHHHHTCCEEEEEGGGGS
T ss_pred HHHHHHHHHHHHHHHhhhhhccccc-ccCCCceEEEECCCC--CCHHHHHHHHHHHhCCCEEEEcchhcc
Confidence 6777777777776655544431111 012346899999999 799999999999999998888876554
No 204
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.39 E-value=0.0047 Score=83.95 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=54.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccccc----cc--------chHHHHHHHHHHHhc----
Q 001031 981 TKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSKW----FG--------EGEKYVKAVFSLASK---- 1041 (1183)
Q Consensus 981 ~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~~----~G--------esE~~Ir~lF~~A~k---- 1041 (1183)
..+..-++|+|+||+|||+||..+|..+ +.++++++.......+ +| ..+..+..++..+++
T Consensus 729 l~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~ 808 (2050)
T 3cmu_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 808 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhc
Confidence 3455679999999999999999999876 4578888876543332 22 111224444544443
Q ss_pred cCCeEEEEeCCccccc
Q 001031 1042 IAPSVVFVDEVDSMLG 1057 (1183)
Q Consensus 1042 ~~PsILfIDEID~Ll~ 1057 (1183)
..|++||||.|..+..
T Consensus 809 ~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 809 GAVDVIVVDSVAALTP 824 (2050)
T ss_dssp TCCSEEEESCGGGCCC
T ss_pred cCCCEEEEcchhhhcc
Confidence 6899999999999864
No 205
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.36 E-value=0.012 Score=61.84 Aligned_cols=35 Identities=31% Similarity=0.486 Sum_probs=26.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~ 1017 (1183)
+..-++|+||||+|||+|+..++... +..++.++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 33568999999999999998887553 556666654
No 206
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.35 E-value=0.0019 Score=67.09 Aligned_cols=34 Identities=38% Similarity=0.520 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
+...|+|.|++|+|||++++++|..++++++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3457999999999999999999999999887543
No 207
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.31 E-value=0.04 Score=66.89 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=50.8
Q ss_pred eEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC--CCcHHHHhccCcEEEecCCCHH
Q 001031 1045 SVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDEAVVRRLPRRLMVNLPDAP 1122 (1183)
Q Consensus 1045 sILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~--~Ld~aLlrRFd~vI~I~lPd~e 1122 (1183)
-+|+|||++.|+.... ......+..+...= ....|.+|.+|.++. .|+..++.-|..+|.+.+.+..
T Consensus 345 ivvVIDE~~~L~~~~~-----~~~~~~L~~Iar~G------Ra~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~ 413 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG-----KKVEELIARIAQKA------RAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKI 413 (574)
T ss_dssp EEEEESCCTTHHHHTC-----HHHHHHHHHHHHHC------TTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHH
T ss_pred EEEEEeCHHHHhhhhh-----HHHHHHHHHHHHHH------hhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHH
Confidence 5899999998863211 11222333333321 235688888888876 8999999999999999999988
Q ss_pred HHHHHH
Q 001031 1123 NREKII 1128 (1183)
Q Consensus 1123 eR~eIL 1128 (1183)
+...++
T Consensus 414 Dsr~IL 419 (574)
T 2iut_A 414 DSRTIL 419 (574)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 877776
No 208
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.29 E-value=0.0024 Score=63.57 Aligned_cols=31 Identities=29% Similarity=0.222 Sum_probs=27.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
-|+|.|++|+|||++++.++..++++++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4899999999999999999999998886654
No 209
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.28 E-value=0.011 Score=66.97 Aligned_cols=73 Identities=14% Similarity=0.146 Sum_probs=46.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh-----CCcEEEEecCcccc----ccc------------cchHHHHHHHHHH---Hhc
Q 001031 986 GILLFGPPGTGKTMLAKAVATEA-----GANFINISMSSITS----KWF------------GEGEKYVKAVFSL---ASK 1041 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eL-----g~pfi~I~~s~L~s----~~~------------GesE~~Ir~lF~~---A~k 1041 (1183)
-++|+||||+|||+|+..++... +..+++++...-.. ..+ ...+...-.+... .+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 58999999999999988776543 56778887654211 001 1222220112222 355
Q ss_pred cCCeEEEEeCCcccccC
Q 001031 1042 IAPSVVFVDEVDSMLGR 1058 (1183)
Q Consensus 1042 ~~PsILfIDEID~Ll~~ 1058 (1183)
..|.+|+||-|..|++.
T Consensus 110 ~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 110 GEKVVVFIDSLGNLASK 126 (333)
T ss_dssp TCCEEEEEECSTTCBCC
T ss_pred cCceEEEEecccccccc
Confidence 67999999999999753
No 210
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.20 E-value=0.038 Score=66.47 Aligned_cols=172 Identities=13% Similarity=0.051 Sum_probs=92.2
Q ss_pred cCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHH----HhCCcE---EEEecCccc---
Q 001031 952 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVAT----EAGANF---INISMSSIT--- 1021 (1183)
Q Consensus 952 ~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~----eLg~pf---i~I~~s~L~--- 1021 (1183)
+|.+..++.|.+.+... . ....+-|.|+|+.|+|||+||+.+++ .....| +.++.+...
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~--~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~ 199 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------C--DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKS 199 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------T--TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTH
T ss_pred CCchHHHHHHHHHHhcc---------c--CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCC
Confidence 49999999998877421 0 11235689999999999999999997 232222 223322210
Q ss_pred ---------cccc-----------cc-hHHHHHHHHHHHhcc-CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhh
Q 001031 1022 ---------SKWF-----------GE-GEKYVKAVFSLASKI-APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNW 1079 (1183)
Q Consensus 1022 ---------s~~~-----------Ge-sE~~Ir~lF~~A~k~-~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~L 1079 (1183)
.... .. ....+...+...-.. +..+|+||+++.. ..+ .+.. .
T Consensus 200 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~-------------~~~--~~~~-~ 263 (549)
T 2a5y_B 200 TFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE-------------ETI--RWAQ-E 263 (549)
T ss_dssp HHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH-------------HHH--HHHH-H
T ss_pred HHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc-------------hhh--cccc-c
Confidence 0000 00 011122223333233 3799999999753 111 1111 0
Q ss_pred cCCcccCCCCEEEEEecCCCCCCcHHHHhccCcEEEecCCCHHHHHHHHHHHHhhccCCCh--hhHHHHHHHcCCCcHHH
Q 001031 1080 DGLRTKDKERVLVLAATNRPFDLDEAVVRRLPRRLMVNLPDAPNREKIIRVILAKEELASD--VDLEGIANMADGYSGSD 1157 (1183)
Q Consensus 1080 dgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~vI~I~lPd~eeR~eILk~iL~k~~l~~d--idl~~LA~~TeGySg~D 1157 (1183)
....||.||........ .......+.++..+.++-.++|...........+ .....|++.+.|. +-.
T Consensus 264 --------~gs~ilvTTR~~~v~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl-PLA 332 (549)
T 2a5y_B 264 --------LRLRCLVTTRDVEISNA--ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN-PAT 332 (549)
T ss_dssp --------TTCEEEEEESBGGGGGG--CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC-HHH
T ss_pred --------CCCEEEEEcCCHHHHHH--cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC-hHH
Confidence 23467778865322110 0011245888888988888888876322211111 1256677777764 455
Q ss_pred HHHH
Q 001031 1158 LKNL 1161 (1183)
Q Consensus 1158 L~~L 1161 (1183)
|+.+
T Consensus 333 l~~~ 336 (549)
T 2a5y_B 333 LMMF 336 (549)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 211
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.20 E-value=0.023 Score=56.46 Aligned_cols=52 Identities=17% Similarity=0.341 Sum_probs=36.7
Q ss_pred HHHHHHHHhhccCCCCEEEEEcChhhhhcC-----ChhhHHHHHHHHhcCCCCEEEEEecc
Q 001031 690 INELFEVALNESKSSPLIVFVKDIEKSLTG-----NNDAYGALKSKLENLPSNVVVIGSHT 745 (1183)
Q Consensus 690 ~~~l~evl~s~~~~~P~Ilf~~Die~~l~~-----~~~~~~~i~~~L~~L~g~vivIgs~~ 745 (1183)
++.+++.+.. ..+|.||+|||+|.+... ..++.+.+...++ .+++.+|++++
T Consensus 103 ~~~~~~~~~~--~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~ 159 (195)
T 1jbk_A 103 LKGVLNDLAK--QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATT 159 (195)
T ss_dssp HHHHHHHHHH--STTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEEC
T ss_pred HHHHHHHHhh--cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCC
Confidence 4555554432 357999999999997642 3566777777776 47888898888
No 212
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.17 E-value=0.014 Score=60.85 Aligned_cols=26 Identities=35% Similarity=0.383 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
+..-+.|.||+|+|||+|++.|+...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44569999999999999999999854
No 213
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.17 E-value=0.025 Score=59.63 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=25.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHH--HH--hCCcEEEEec
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVA--TE--AGANFINISM 1017 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA--~e--Lg~pfi~I~~ 1017 (1183)
+..-+.|.||+|+|||+|++.|+ .. .+...+.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 33569999999999999999998 32 2444444443
No 214
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.14 E-value=0.0028 Score=64.29 Aligned_cols=31 Identities=48% Similarity=0.861 Sum_probs=28.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
..|+|+|+||+|||++++.++..++++++..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 5699999999999999999999999887654
No 215
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.13 E-value=0.0026 Score=64.63 Aligned_cols=31 Identities=26% Similarity=0.615 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
.|+|.|+||+|||++|+.++..+|++++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 5999999999999999999999999987644
No 216
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.12 E-value=0.015 Score=67.86 Aligned_cols=76 Identities=22% Similarity=0.256 Sum_probs=47.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCccccc--------cccc----------------h-
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSSITSK--------WFGE----------------G- 1028 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---------g~pfi~I~~s~L~s~--------~~Ge----------------s- 1028 (1183)
+..-++|+||||+|||+|+..++... +...++++....... .+|- .
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCChH
Confidence 44569999999999999999876443 234777775442110 0010 0
Q ss_pred --HHHHHHHHHHHhccCCeEEEEeCCcccccC
Q 001031 1029 --EKYVKAVFSLASKIAPSVVFVDEVDSMLGR 1058 (1183)
Q Consensus 1029 --E~~Ir~lF~~A~k~~PsILfIDEID~Ll~~ 1058 (1183)
...+..+...+....|.+|+||++-.++..
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 112333344445568999999999888643
No 217
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.12 E-value=0.0055 Score=67.66 Aligned_cols=33 Identities=30% Similarity=0.525 Sum_probs=27.9
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001031 492 CPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1183)
Q Consensus 492 s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilD 526 (1183)
.+.|||+||+| ...++||+++|+.++.++..++
T Consensus 38 ~~~vll~G~~G--tGKT~la~~i~~~~~~~~~~~~ 70 (324)
T 1hqc_A 38 LEHLLLFGPPG--LGKTTLAHVIAHELGVNLRVTS 70 (324)
T ss_dssp CCCCEEECCTT--CCCHHHHHHHHHHHTCCEEEEC
T ss_pred CCcEEEECCCC--CCHHHHHHHHHHHhCCCEEEEe
Confidence 46799999999 7899999999999887665544
No 218
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.09 E-value=0.0037 Score=63.24 Aligned_cols=30 Identities=33% Similarity=0.585 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
.|+|.|+||+|||++++.||..++++++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 589999999999999999999999887653
No 219
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.07 E-value=0.017 Score=69.00 Aligned_cols=76 Identities=17% Similarity=0.100 Sum_probs=49.6
Q ss_pred ccccccccchhhHHHHHHhhhhhh-cc-ccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecCC
Q 001031 452 SFESFPYYLSDITKNVLIASTYVH-LK-CNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLL 529 (1183)
Q Consensus 452 sfd~FPYylse~tk~~L~~~~~~h-Lk-~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs~~ 529 (1183)
+|+++-. .+..+..|....-.. .. ...+.+.+.+-.+..+.|||+||+| ....+||+|||+.++.+++-++.++
T Consensus 37 ~~~dliG--~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppG--tGKTtla~~la~~l~~~~i~in~s~ 112 (516)
T 1sxj_A 37 NLQQVCG--NKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPG--IGKTTAAHLVAQELGYDILEQNASD 112 (516)
T ss_dssp SGGGCCS--CHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTT--SSHHHHHHHHHHHTTCEEEEECTTS
T ss_pred CHHHhcC--CHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCC--CCHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4555433 255555555443321 11 1233344444344668999999999 8999999999999999988888765
Q ss_pred CC
Q 001031 530 LP 531 (1183)
Q Consensus 530 ~~ 531 (1183)
+.
T Consensus 113 ~~ 114 (516)
T 1sxj_A 113 VR 114 (516)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 220
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.06 E-value=0.017 Score=62.39 Aligned_cols=38 Identities=32% Similarity=0.355 Sum_probs=32.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCcc
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSI 1020 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~L 1020 (1183)
.+..|+|.|+||+|||++++.++..++..++.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 34679999999999999999999999877777776554
No 221
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.04 E-value=0.012 Score=69.22 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001031 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
.+||.|+||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998877
No 222
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.03 E-value=0.0048 Score=62.75 Aligned_cols=32 Identities=34% Similarity=0.423 Sum_probs=28.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
+.-|+|.|+||+|||++++.++..++++++..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 35699999999999999999999999887664
No 223
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.03 E-value=0.0032 Score=63.10 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=28.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
..|+|.|++|+|||++++.+|..+|++++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 36999999999999999999999999987643
No 224
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.01 E-value=0.064 Score=60.22 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=45.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc-------cc-------------ccchHHHHHHHHHHH
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------KW-------------FGEGEKYVKAVFSLA 1039 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s-------~~-------------~GesE~~Ir~lF~~A 1039 (1183)
++.-++|.||+|+|||+++..+|..+ +..+..+++..... .| .+.....+...+..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 44568999999999999999999776 55555555432110 00 011222223344555
Q ss_pred hccCCeEEEEeCCcc
Q 001031 1040 SKIAPSVVFVDEVDS 1054 (1183)
Q Consensus 1040 ~k~~PsILfIDEID~ 1054 (1183)
....+.+|+||+.-.
T Consensus 183 ~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 183 LARNKDVVIIDTAGR 197 (306)
T ss_dssp HHTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCc
Confidence 566789999998853
No 225
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.97 E-value=0.07 Score=64.02 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=49.1
Q ss_pred Ce-EEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCC--CCcHHHHhccCcEEEecCCC
Q 001031 1044 PS-VVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPF--DLDEAVVRRLPRRLMVNLPD 1120 (1183)
Q Consensus 1044 Ps-ILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~--~Ld~aLlrRFd~vI~I~lPd 1120 (1183)
|- +|+|||...++.. .......++..+...-+ ...+.+|.+|.++. .++..++..|..+|.+.+.+
T Consensus 297 P~ivlvIDE~~~ll~~-----~~~~~~~~l~~Lar~gR------a~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s 365 (512)
T 2ius_A 297 PYIVVLVDEFADLMMT-----VGKKVEELIARLAQKAR------AAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSS 365 (512)
T ss_dssp CEEEEEEETHHHHHHH-----HHHHHHHHHHHHHHHCG------GGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSS
T ss_pred CcEEEEEeCHHHHHhh-----hhHHHHHHHHHHHHHhh------hCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCC
Confidence 44 8999999877521 11112222233322211 13577777887765 68888888999999999999
Q ss_pred HHHHHHHHHH
Q 001031 1121 APNREKIIRV 1130 (1183)
Q Consensus 1121 ~eeR~eILk~ 1130 (1183)
..+...++..
T Consensus 366 ~~dsr~ilg~ 375 (512)
T 2ius_A 366 KIDSRTILDQ 375 (512)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHhcCC
Confidence 8888877653
No 226
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.96 E-value=0.0034 Score=64.43 Aligned_cols=32 Identities=41% Similarity=0.713 Sum_probs=27.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH-hCCcEEEEe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATE-AGANFINIS 1016 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~e-Lg~pfi~I~ 1016 (1183)
..|+|+|+||+|||++++.++.. +|++++.++
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 46999999999999999999999 788776543
No 227
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.94 E-value=0.0053 Score=64.49 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=28.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
+..|+|.|+||+||||+++.||..++++++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 45799999999999999999999999877654
No 228
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.93 E-value=0.029 Score=58.58 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001031 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
.+.|.||+|+|||+|++.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48899999999999999999876
No 229
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.91 E-value=0.0053 Score=61.49 Aligned_cols=30 Identities=30% Similarity=0.695 Sum_probs=26.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~ 1014 (1183)
..|.|.||+|+|||++++.+|..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 459999999999999999999999986654
No 230
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.90 E-value=0.018 Score=63.75 Aligned_cols=36 Identities=39% Similarity=0.506 Sum_probs=29.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~ 1019 (1183)
+.-|+|.||||+|||++++.++..++..++.+++..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~ 68 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDT 68 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechH
Confidence 456999999999999999999999855566666543
No 231
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.87 E-value=0.0043 Score=63.23 Aligned_cols=32 Identities=22% Similarity=0.451 Sum_probs=28.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
.-|+|.|+||+|||++++.++..++++++..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 56999999999999999999999998876543
No 232
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.87 E-value=0.0052 Score=60.69 Aligned_cols=29 Identities=45% Similarity=0.690 Sum_probs=26.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
-|+|.||||+|||++++.+ ..+|++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5899999999999999999 8889987764
No 233
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.86 E-value=0.0046 Score=67.14 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=28.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~ 1017 (1183)
-++|.||+|+|||+||++||..++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47999999999999999999999998887664
No 234
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.84 E-value=0.0061 Score=61.76 Aligned_cols=31 Identities=19% Similarity=0.422 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
.-|+|.|+||+|||++|+.++..++++++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 5699999999999999999999999877543
No 235
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.83 E-value=0.0069 Score=62.61 Aligned_cols=31 Identities=39% Similarity=0.615 Sum_probs=28.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
..|+|.|+||+|||++|+.++..++++++.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 4599999999999999999999999887655
No 236
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.83 E-value=0.022 Score=64.94 Aligned_cols=37 Identities=30% Similarity=0.336 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------CCcEEEEecCc
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---------GANFINISMSS 1019 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---------g~pfi~I~~s~ 1019 (1183)
+..-++|+||+|+|||+|++.++... +..+++++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 33558999999999999999999876 23557776543
No 237
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.81 E-value=0.0059 Score=61.04 Aligned_cols=30 Identities=27% Similarity=0.571 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
.|+|.|++|+|||++++.++..++++++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 589999999999999999999999887653
No 238
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.79 E-value=0.058 Score=60.39 Aligned_cols=36 Identities=25% Similarity=0.184 Sum_probs=28.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001031 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1183)
Q Consensus 982 kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~ 1017 (1183)
.+..-++|.|+||+|||+|+..+|... +.+++.+++
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 344559999999999999999998664 457777764
No 239
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.78 E-value=0.02 Score=63.44 Aligned_cols=58 Identities=22% Similarity=0.228 Sum_probs=42.2
Q ss_pred ccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001031 452 SFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1183)
Q Consensus 452 sfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs 527 (1183)
+|++|-.. ++.+..|..+.- . .....-+|+.||+| ....+||+|||+.++.+++-++.
T Consensus 24 ~~~~ivg~--~~~~~~l~~~l~----~----------~~~~~~~L~~G~~G--~GKT~la~~la~~l~~~~~~i~~ 81 (324)
T 3u61_B 24 TIDECILP--AFDKETFKSITS----K----------GKIPHIILHSPSPG--TGKTTVAKALCHDVNADMMFVNG 81 (324)
T ss_dssp STTTSCCC--HHHHHHHHHHHH----T----------TCCCSEEEECSSTT--SSHHHHHHHHHHHTTEEEEEEET
T ss_pred CHHHHhCc--HHHHHHHHHHHH----c----------CCCCeEEEeeCcCC--CCHHHHHHHHHHHhCCCEEEEcc
Confidence 57776655 666666665543 1 11224579999999 79999999999999988887774
No 240
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.73 E-value=0.0061 Score=61.79 Aligned_cols=31 Identities=32% Similarity=0.654 Sum_probs=27.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
..|+|.|+||+||||+++.+++.++++++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 4599999999999999999999999876543
No 241
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.73 E-value=0.067 Score=63.08 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=51.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc--------------------ccccchHHHHHHHHHHH
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS--------------------KWFGEGEKYVKAVFSLA 1039 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s--------------------~~~GesE~~Ir~lF~~A 1039 (1183)
++.-|++.|++|+||||++..+|..+ |..+..+++..... .........+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999999876 66666666543211 00112344556677777
Q ss_pred hccCCeEEEEeCCccc
Q 001031 1040 SKIAPSVVFVDEVDSM 1055 (1183)
Q Consensus 1040 ~k~~PsILfIDEID~L 1055 (1183)
......+|+||..-++
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7777889999988644
No 242
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.68 E-value=0.016 Score=62.86 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=30.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH---hCCcEEEEecCcc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATE---AGANFINISMSSI 1020 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~e---Lg~pfi~I~~s~L 1020 (1183)
.-|+|.|+||+|||++|+.++.. .|.+++.++...+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 46999999999999999999998 6888886665443
No 243
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.66 E-value=0.0057 Score=60.97 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
.|+|.|++|+|||++++.++..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 489999999999999999999999888754
No 244
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.66 E-value=0.037 Score=59.39 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s 1018 (1183)
.+||+||+|+|||.++.+++..++..++.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 599999999999999999998887777666543
No 245
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.65 E-value=0.0055 Score=62.60 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=27.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
.-|+|.|+||+|||++++.++..++++++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4699999999999999999999999776654
No 246
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.64 E-value=0.043 Score=59.93 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=21.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
+..-++|+||+|+|||+|+..++..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 33568999999999999999998654
No 247
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.62 E-value=0.041 Score=57.86 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=26.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH----hCCcEEEEec
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATE----AGANFINISM 1017 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~e----Lg~pfi~I~~ 1017 (1183)
+..-++|+|+||+|||+||..+|.. .+.+++.++.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 3345899999999999999887643 2667776664
No 248
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.62 E-value=0.015 Score=66.64 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=44.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecC-ccc---------cccccchHHHHHHHHHHHhccCCeEEEEe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA----GANFINISMS-SIT---------SKWFGEGEKYVKAVFSLASKIAPSVVFVD 1050 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL----g~pfi~I~~s-~L~---------s~~~GesE~~Ir~lF~~A~k~~PsILfID 1050 (1183)
.-++|.||+|+|||+|.++++..+ +..++.+.-+ ++. ....+.........+..|-...|.||++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 358999999999999999998776 3444444321 111 00111111234446677778899999999
Q ss_pred CCc
Q 001031 1051 EVD 1053 (1183)
Q Consensus 1051 EID 1053 (1183)
|+-
T Consensus 204 Ep~ 206 (356)
T 3jvv_A 204 EMR 206 (356)
T ss_dssp CCC
T ss_pred CCC
Confidence 993
No 249
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.62 E-value=0.014 Score=65.10 Aligned_cols=75 Identities=16% Similarity=0.230 Sum_probs=48.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---------------C----CcEEEEecCccc-cc-------ccc---------
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---------------G----ANFINISMSSIT-SK-------WFG--------- 1026 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---------------g----~pfi~I~~s~L~-s~-------~~G--------- 1026 (1183)
+..-++|+||||+|||+||..+|... | ..+++++...-+ .. .+|
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDN 176 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcC
Confidence 33558999999999999999998763 2 567777765421 00 000
Q ss_pred -------chH---HHHHHHHHHHhc-cCCeEEEEeCCccccc
Q 001031 1027 -------EGE---KYVKAVFSLASK-IAPSVVFVDEVDSMLG 1057 (1183)
Q Consensus 1027 -------esE---~~Ir~lF~~A~k-~~PsILfIDEID~Ll~ 1057 (1183)
..+ ..+..+...... ..+.+|+||.+..++.
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 111 122334444455 5688999999998864
No 250
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.59 E-value=0.0095 Score=61.59 Aligned_cols=32 Identities=31% Similarity=0.535 Sum_probs=28.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
+.-|+|.|++|+|||++++.|+..+++.++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 35699999999999999999999998877653
No 251
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.58 E-value=0.0084 Score=62.60 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
.|+|.||||+|||++|+.++..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 489999999999999999999999887765
No 252
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.56 E-value=0.006 Score=61.57 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=23.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi 1013 (1183)
.-|+|.|+||+|||++|+.+++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46999999999999999999999999887
No 253
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.54 E-value=0.006 Score=61.10 Aligned_cols=30 Identities=40% Similarity=0.550 Sum_probs=24.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHH-HhCCcEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVAT-EAGANFIN 1014 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~-eLg~pfi~ 1014 (1183)
.-|+|.|+||+|||++|+.++. .+++.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 4589999999999999999998 45554443
No 254
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.53 E-value=0.0087 Score=62.36 Aligned_cols=30 Identities=30% Similarity=0.486 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
.|+|.||||+|||++|+.++..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 489999999999999999999999887755
No 255
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.52 E-value=0.0091 Score=60.35 Aligned_cols=31 Identities=19% Similarity=0.435 Sum_probs=27.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
.-|+|.|+||+|||++++.++..++++++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 4699999999999999999999999877654
No 256
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.51 E-value=0.01 Score=63.21 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=28.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
..|+|.|+||+|||++|+.||..++++++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 5699999999999999999999999877664
No 257
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.49 E-value=0.0079 Score=60.82 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=23.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
.-|+|.|+||+|||++++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999887
No 258
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.48 E-value=0.0075 Score=62.22 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=28.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
.-|+|.|++|+|||++++.+++.++++++..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 46999999999999999999999998776543
No 259
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.47 E-value=0.007 Score=61.62 Aligned_cols=36 Identities=31% Similarity=0.486 Sum_probs=30.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~ 1019 (1183)
..-++|.||+|+|||||++.|+...+...+.++..+
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 356999999999999999999998777777777554
No 260
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.47 E-value=0.01 Score=63.86 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=29.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
++..|+|.||||+|||++|+.|++.++++++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 456799999999999999999999998877654
No 261
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.45 E-value=0.044 Score=64.45 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=28.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 001031 982 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 1017 (1183)
Q Consensus 982 kP~~gVLL~GPPGTGKT~LAkAIA~eL----g~pfi~I~~ 1017 (1183)
.+..-++|.|+||+|||+|+..+|... |.+++.++.
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 344569999999999999999987654 567777764
No 262
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.44 E-value=0.0092 Score=63.07 Aligned_cols=31 Identities=19% Similarity=0.434 Sum_probs=28.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
..|+|.|+||+|||++++.||..++++++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 5699999999999999999999999877654
No 263
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.43 E-value=0.012 Score=59.29 Aligned_cols=31 Identities=32% Similarity=0.521 Sum_probs=26.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~ 1014 (1183)
...++|.|++|+|||++++.++..+|..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 3469999999999999999999998876554
No 264
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.38 E-value=0.0095 Score=62.67 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=28.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
..|+|.|+||+|||++++.||..++++++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4699999999999999999999999887765
No 265
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.36 E-value=0.061 Score=59.04 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=26.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEe
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINIS 1016 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL----g~pfi~I~ 1016 (1183)
+..-++|.||||+|||+|++.||..+ |.+++.++
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 33468999999999999999998765 44565554
No 266
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.33 E-value=0.0092 Score=72.59 Aligned_cols=32 Identities=41% Similarity=0.486 Sum_probs=25.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 1016 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~ 1016 (1183)
..++|.|+||||||+++.+++..+ +..++.+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 468999999999999999998765 66665543
No 267
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.32 E-value=0.011 Score=62.67 Aligned_cols=29 Identities=41% Similarity=0.678 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~ 1014 (1183)
.|+|.||||+||+|.|+.||+.+|++.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 48899999999999999999999987754
No 268
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.29 E-value=0.014 Score=59.24 Aligned_cols=31 Identities=29% Similarity=0.158 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001031 986 GILLFGPPGTGKTMLAKAVATEA---GANFINIS 1016 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~ 1016 (1183)
-|.|.|++|+|||++++.++..+ |++++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999988 89988775
No 269
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.28 E-value=0.055 Score=63.44 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=28.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 001031 982 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISM 1017 (1183)
Q Consensus 982 kP~~gVLL~GPPGTGKT~LAkAIA~eL----g~pfi~I~~ 1017 (1183)
.+..-++|.|+||+|||+|+..+|... +.+++.+++
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 344558999999999999999987653 567777765
No 270
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.23 E-value=0.013 Score=62.65 Aligned_cols=31 Identities=26% Similarity=0.465 Sum_probs=27.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~ 1014 (1183)
++-|+|.||||+||+|.|+.|++.++++.+.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 3568899999999999999999999887653
No 271
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.21 E-value=0.014 Score=60.43 Aligned_cols=31 Identities=39% Similarity=0.758 Sum_probs=26.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi 1013 (1183)
++.-+.|.||+|+|||++++.|+..+|..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 3356999999999999999999999976554
No 272
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.20 E-value=0.034 Score=60.93 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=29.7
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhc---CCeEEEEecCCC
Q 001031 493 PRILLSGPAGSEIYQETLAKALAKHF---SARLLIVDSLLL 530 (1183)
Q Consensus 493 ~rILLsgp~GsE~Yqe~LaKALA~~f---~a~LLilDs~~~ 530 (1183)
..|||.||+| ....+|||+||+.+ +.+++.+|...+
T Consensus 48 ~~~ll~G~~G--tGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 48 GSFLFLGPTG--VGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp EEEEEESCSS--SSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred eEEEEECCCC--cCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 4699999999 78999999999998 556777776443
No 273
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.18 E-value=0.011 Score=62.21 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=27.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~ 1014 (1183)
..|+|.|+||+|||++++.||..++.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 569999999999999999999999986654
No 274
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.15 E-value=0.014 Score=61.16 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
.|+|.|+||+|||++++.++..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999999887665
No 275
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.15 E-value=0.018 Score=58.31 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=30.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s 1018 (1183)
+.-|.|.|++|+|||++++.++..+ |++++.++..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 3568999999999999999999988 9999888743
No 276
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.15 E-value=0.16 Score=59.82 Aligned_cols=73 Identities=19% Similarity=0.098 Sum_probs=48.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc----------cc----------ccchHHHHHHHHHHH
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS----------KW----------FGEGEKYVKAVFSLA 1039 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s----------~~----------~GesE~~Ir~lF~~A 1039 (1183)
++.-++|.||+|+||||++..+|..+ |..+..+++..... .. ...........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 34668999999999999999998776 66666665432110 00 011223344555666
Q ss_pred hccCCeEEEEeCCccc
Q 001031 1040 SKIAPSVVFVDEVDSM 1055 (1183)
Q Consensus 1040 ~k~~PsILfIDEID~L 1055 (1183)
.+..+.+|+||...++
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 6667899999988654
No 277
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.10 E-value=0.012 Score=67.70 Aligned_cols=30 Identities=23% Similarity=0.551 Sum_probs=27.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~ 1014 (1183)
..|+|.|++|+|||+++++||..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 469999999999999999999999888844
No 278
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.09 E-value=0.035 Score=62.90 Aligned_cols=33 Identities=36% Similarity=0.561 Sum_probs=30.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~ 1017 (1183)
..|+|.||+|+|||+|++.+|+.++..++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 469999999999999999999999998888864
No 279
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.07 E-value=0.03 Score=61.34 Aligned_cols=70 Identities=26% Similarity=0.361 Sum_probs=42.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecC--cccc--------ccccchHHHHHHHHHHHhccCCeEEE
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEAG----ANFINISMS--SITS--------KWFGEGEKYVKAVFSLASKIAPSVVF 1048 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eLg----~pfi~I~~s--~L~s--------~~~GesE~~Ir~lF~~A~k~~PsILf 1048 (1183)
+..-++|.||+|+|||+|+++++..+. ..++....+ .+.. ..++.....++..+..+-...|.+|+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~ill 103 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 103 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEE
Confidence 334589999999999999999987652 333322211 0000 01111111234555566566899999
Q ss_pred EeCC
Q 001031 1049 VDEV 1052 (1183)
Q Consensus 1049 IDEI 1052 (1183)
+||.
T Consensus 104 lDEp 107 (261)
T 2eyu_A 104 VGEM 107 (261)
T ss_dssp ESCC
T ss_pred eCCC
Confidence 9998
No 280
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.03 E-value=0.014 Score=59.60 Aligned_cols=29 Identities=24% Similarity=0.578 Sum_probs=26.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~ 1014 (1183)
.|.|.|++|+||||+++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 48999999999999999999999987654
No 281
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.93 E-value=0.016 Score=60.56 Aligned_cols=30 Identities=33% Similarity=0.483 Sum_probs=26.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~ 1014 (1183)
..|.|.||+|+||||+++.++..+|++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 368999999999999999999999987664
No 282
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.93 E-value=0.15 Score=53.97 Aligned_cols=116 Identities=17% Similarity=0.178 Sum_probs=68.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc---------ccccc-----------c--c----chHHHHHHHH
Q 001031 986 GILLFGPPGTGKTMLAKAVATEA---GANFINISMSS---------ITSKW-----------F--G----EGEKYVKAVF 1036 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~---------L~s~~-----------~--G----esE~~Ir~lF 1036 (1183)
.|++|+++|.|||++|-.+|..+ |..+..+..-. +.... . . ..+......+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 59999999999999999998765 77777663211 22221 0 0 0123455556
Q ss_pred HHHhcc----CCeEEEEeCCcccccCCCCcchHHHHHHHHHHHHHhhcCCcccCCCCEEEEEecCCCCCCcHHHHhccCc
Q 001031 1037 SLASKI----APSVVFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVVRRLPR 1112 (1183)
Q Consensus 1037 ~~A~k~----~PsILfIDEID~Ll~~r~~~~~~e~l~~il~~LL~~Ldgl~~k~~~~VlVIaTTN~p~~Ld~aLlrRFd~ 1112 (1183)
..+++. ...+|+|||+-..+.-..-+ ..+++..+.. .+...-||.|+|.+ ++.++..-|.
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l~---------~~ev~~~l~~----Rp~~~~vIlTGr~a---p~~l~e~AD~ 173 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYLP---------LEEVISALNA----RPGHQTVIITGRGC---HRDILDLADT 173 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSSC---------HHHHHHHHHT----SCTTCEEEEECSSC---CHHHHHHCSE
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCCC---------HHHHHHHHHh----CcCCCEEEEECCCC---cHHHHHhCcc
Confidence 555443 46899999996543222111 1122222222 23567888888874 5677777666
Q ss_pred EEEec
Q 001031 1113 RLMVN 1117 (1183)
Q Consensus 1113 vI~I~ 1117 (1183)
+-++.
T Consensus 174 VTem~ 178 (196)
T 1g5t_A 174 VSELR 178 (196)
T ss_dssp EEECC
T ss_pred eeeec
Confidence 65554
No 283
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.90 E-value=0.01 Score=59.90 Aligned_cols=32 Identities=25% Similarity=0.219 Sum_probs=26.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC---CcEEEEec
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAG---ANFINISM 1017 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg---~pfi~I~~ 1017 (1183)
-|+|.|+||+|||++++.+++.++ .++..++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence 489999999999999999999885 34555543
No 284
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.89 E-value=0.017 Score=61.20 Aligned_cols=30 Identities=33% Similarity=0.557 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
.|+|.|+||+|||++++.++..++++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 489999999999999999999999876554
No 285
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.87 E-value=0.34 Score=62.76 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=33.9
Q ss_pred cCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 001031 952 GALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 952 ~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
+|.+...+.|.+.+.. . .+.+-|.|+|+.|.|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~----------~---d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLE----------L---RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHH----------C---CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhc----------c---CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 7888888888887642 0 12346899999999999999999863
No 286
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.87 E-value=0.021 Score=58.17 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=27.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001031 987 ILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~ 1017 (1183)
|.|.|++|+||||+++.+++.+ |++++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 7899999999999999999998 999886643
No 287
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.79 E-value=0.012 Score=60.63 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=26.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
.|.|.|++|+|||++++.++. +|++++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 589999999999999999999 887776654
No 288
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.77 E-value=0.11 Score=61.81 Aligned_cols=36 Identities=11% Similarity=0.047 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecC
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 1018 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL----g~pfi~I~~s 1018 (1183)
+..-++|.|+||+|||+|+..+|... |.+++.++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 44568999999999999999998765 4577777653
No 289
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.76 E-value=0.12 Score=60.79 Aligned_cols=37 Identities=24% Similarity=0.181 Sum_probs=29.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001031 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1183)
Q Consensus 982 kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s 1018 (1183)
.+..-++|.|+||+|||+||..+|... |.++..+++.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 344559999999999999999988665 6777777653
No 290
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.76 E-value=0.019 Score=58.93 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=29.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcEEEEec
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA-GANFINISM 1017 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL-g~pfi~I~~ 1017 (1183)
.-|.|.|++|+|||++++.++..+ |++++.+..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 569999999999999999999998 688877653
No 291
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.76 E-value=0.071 Score=54.67 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
..+++.+|+|+|||.++..++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999888776543
No 292
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.63 E-value=0.059 Score=72.69 Aligned_cols=76 Identities=26% Similarity=0.346 Sum_probs=59.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCc----------------cccccccchHHHHHHHHHHHhccCCe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMSS----------------ITSKWFGEGEKYVKAVFSLASKIAPS 1045 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~----------------L~s~~~GesE~~Ir~lF~~A~k~~Ps 1045 (1183)
+-|+||||+|+|||+||-.++.+. |-....++... +.-.+....|+.+.-+...++...++
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~ 1511 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1511 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCC
Confidence 449999999999999998776443 66676666542 22234556688899999999999999
Q ss_pred EEEEeCCcccccCCC
Q 001031 1046 VVFVDEVDSMLGRRE 1060 (1183)
Q Consensus 1046 ILfIDEID~Ll~~r~ 1060 (1183)
+|+||-+..|.++..
T Consensus 1512 ~vvvDsv~al~~~~e 1526 (1706)
T 3cmw_A 1512 VIVVDSVAALTPKAE 1526 (1706)
T ss_dssp EEEESCSTTCCCTTT
T ss_pred EEEEccHHhCCcccc
Confidence 999999999987643
No 293
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.62 E-value=0.023 Score=58.34 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=27.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
-|.|.|++|+|||++++.+|..+|++++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5899999999999999999999998887643
No 294
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.60 E-value=0.038 Score=63.61 Aligned_cols=71 Identities=25% Similarity=0.355 Sum_probs=43.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecC-cc--------ccc-cccchHHHHHHHHHHHhccCCeEEE
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEAG----ANFINISMS-SI--------TSK-WFGEGEKYVKAVFSLASKIAPSVVF 1048 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eLg----~pfi~I~~s-~L--------~s~-~~GesE~~Ir~lF~~A~k~~PsILf 1048 (1183)
+...++|.||+|+||||++++++..+. ..++.+..+ ++ ... .+|.....+...+..+-...|.+|+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~il 214 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 214 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEE
Confidence 334699999999999999999988652 344443321 10 000 0110111234455566667899999
Q ss_pred EeCCc
Q 001031 1049 VDEVD 1053 (1183)
Q Consensus 1049 IDEID 1053 (1183)
+||+-
T Consensus 215 ldE~~ 219 (372)
T 2ewv_A 215 VGEMR 219 (372)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99993
No 295
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.46 E-value=0.12 Score=60.36 Aligned_cols=93 Identities=20% Similarity=0.335 Sum_probs=52.8
Q ss_pred CCcccccCcHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecC-ccc
Q 001031 946 VTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAG---ANFINISMS-SIT 1021 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eLg---~pfi~I~~s-~L~ 1021 (1183)
.++++++-.......|...+ ..+..-++|.||+|+|||||+++++..+. ..++.+.-+ ++.
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~---------------~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~ 208 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLI---------------KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD 208 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHH---------------TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC
T ss_pred CCHHHcCCCHHHHHHHHHHH---------------HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhc
Confidence 45667665555555554432 12223489999999999999999999874 334444321 110
Q ss_pred c-----ccccch-HHHHHHHHHHHhccCCeEEEEeCCc
Q 001031 1022 S-----KWFGEG-EKYVKAVFSLASKIAPSVVFVDEVD 1053 (1183)
Q Consensus 1022 s-----~~~Ges-E~~Ir~lF~~A~k~~PsILfIDEID 1053 (1183)
- ..+... .-.....+..+-+..|.+|++.||.
T Consensus 209 ~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 209 IDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp CSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred cCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 0 001100 0112233344455689999999863
No 296
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.44 E-value=0.036 Score=56.87 Aligned_cols=31 Identities=19% Similarity=0.074 Sum_probs=26.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc--EEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGAN--FINI 1015 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~p--fi~I 1015 (1183)
.-|+|.|+||+|||++++.++..++.. ++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~ 37 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYLT 37 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEe
Confidence 468999999999999999999998763 5544
No 297
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.43 E-value=0.036 Score=57.35 Aligned_cols=36 Identities=25% Similarity=0.198 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s 1018 (1183)
++.-|.|.||+|+|||+++++|+..+ |...+.++..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 34568999999999999999999988 5554455543
No 298
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.31 E-value=0.028 Score=60.11 Aligned_cols=31 Identities=26% Similarity=0.605 Sum_probs=27.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~ 1014 (1183)
+.-+.|.||+|+||||+++.|++.+|...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 3579999999999999999999999876543
No 299
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.31 E-value=0.014 Score=60.27 Aligned_cols=29 Identities=24% Similarity=0.156 Sum_probs=24.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcE
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEAGANF 1012 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eLg~pf 1012 (1183)
+.-|+|.|++|+|||++++.+++.++.++
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 35699999999999999999999875443
No 300
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.25 E-value=0.036 Score=59.92 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=27.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~ 1014 (1183)
..-|.|.||+|+|||++++.||+.+|+.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 3468999999999999999999999987664
No 301
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.24 E-value=0.025 Score=58.44 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
-|.|.|++|+||||+++.++. +|++++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 488999999999999999998 88877643
No 302
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.24 E-value=0.03 Score=57.30 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=26.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
+.-|.|.|++|+|||++++.++.. |++++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 356999999999999999999998 8777654
No 303
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.18 E-value=0.2 Score=51.29 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=17.3
Q ss_pred ceEEEEcCCCChHHHHHH-HHHHH
Q 001031 985 KGILLFGPPGTGKTMLAK-AVATE 1007 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAk-AIA~e 1007 (1183)
+.+++.+|+|+|||..+- .+...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 469999999999998643 34444
No 304
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.17 E-value=0.033 Score=60.25 Aligned_cols=30 Identities=30% Similarity=0.618 Sum_probs=27.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~ 1014 (1183)
..|.|.||+|+|||++++.|+..++++++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 469999999999999999999999987754
No 305
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.16 E-value=0.024 Score=59.40 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
-|.|+|++|+|||++++.++..+|++++..+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4899999999999999999999998877644
No 306
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.06 E-value=0.036 Score=60.50 Aligned_cols=32 Identities=31% Similarity=0.556 Sum_probs=28.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
..|.|.|++|+|||++++.||..++++|+..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 46999999999999999999999999887643
No 307
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.99 E-value=0.018 Score=59.47 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=23.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
+.-|+|.|++|+|||++++.++..++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35699999999999999999999874
No 308
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.95 E-value=0.047 Score=58.72 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=30.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcE--------EEEecCccc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANF--------INISMSSIT 1021 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pf--------i~I~~s~L~ 1021 (1183)
.-|.|.|++|+|||++|+.|+..+++++ +.+++.++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 5699999999999999999999999873 356666654
No 309
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=93.85 E-value=0.03 Score=72.00 Aligned_cols=77 Identities=27% Similarity=0.329 Sum_probs=61.0
Q ss_pred CCCCCCcccccccccccccCCceeeeccCCCCcccCCCCCCCCCcccceeeeccccCCCCceeeeecCCCCCCCCCCCCC
Q 001031 583 ALPKPEISTASSKNYTFKKGDRVKFVGNVTSGTTVQPTLRGPGIGFRGRVILPFEDNDFSKIGVRFDRSIPEGNNLGGFC 662 (1183)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~gdrvk~~g~~~~~~~~~~~~~~p~~g~~g~v~~~~e~n~s~kvgV~fd~~~~~~~~l~~~~ 662 (1183)
+..++..+..-+.+++|.-||||.||..+. .-+.|.||.|+-.--.+..--+-|.||.+.-.|+||++.|
T Consensus 1050 allkP~~a~~~L~~Q~F~LGDRVv~VqdsG----------~VPl~~kGTVVGi~~~~~~~~ldVvFD~~F~~G~tlggrc 1119 (1155)
T 3pie_A 1050 AILNAESSYVLLRSQRFHLGDRVMYIQDSG----------KVPLHSKGTVVGYTSIGKNVSIQVLFDNEIIAGNNFGGRL 1119 (1155)
T ss_pred HeeCHHHhhccccCCcccCCCeEEEecCCC----------CCccccceEEEEEecCCCceEEEEEeccCccCCCcccccc
Confidence 344544454556789999999999998644 2478999999877555555569999999999999999999
Q ss_pred CCCCCcc
Q 001031 663 EDDHGFF 669 (1183)
Q Consensus 663 ~~~~~~~ 669 (1183)
++..|.-
T Consensus 1120 s~~RG~~ 1126 (1155)
T 3pie_A 1120 QTRRGLG 1126 (1155)
T ss_pred ccccccc
Confidence 9999844
No 310
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.77 E-value=0.06 Score=54.79 Aligned_cols=35 Identities=29% Similarity=0.311 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~ 1017 (1183)
++.-|+|.|++|+|||++++.++..+ +.+++.++.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 34569999999999999999999887 455666654
No 311
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.75 E-value=0.23 Score=55.34 Aligned_cols=36 Identities=31% Similarity=0.394 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecC
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMS 1018 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL----g~pfi~I~~s 1018 (1183)
++.-++|.||+|+|||+++..+|..+ |..+..+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 44679999999999999999998765 5566666653
No 312
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.73 E-value=0.027 Score=64.26 Aligned_cols=34 Identities=32% Similarity=0.415 Sum_probs=30.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s 1018 (1183)
.-|+|.||+|+|||+|+..||+.++..++..+.-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 4699999999999999999999999888887654
No 313
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=93.60 E-value=0.3 Score=50.69 Aligned_cols=60 Identities=22% Similarity=0.132 Sum_probs=33.6
Q ss_pred CCCcccccCcHHHHHHHHHHHHc-ccCCh-hhhhcCCCCCCCceEEEEcCCCChHHHH-HHHHHHH
Q 001031 945 GVTFDDIGALENVKDTLKELVML-PLQRP-ELFCKGQLTKPCKGILLFGPPGTGKTML-AKAVATE 1007 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~l-pl~~~-elf~k~~l~kP~~gVLL~GPPGTGKT~L-AkAIA~e 1007 (1183)
..+|++++-.+.+.+.+.+.-.. +...+ +.+... . ..+.+++.+|+|+|||.. +-.+...
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~--~-~~~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPI--I-EGHDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHH--H-TTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHH--h-cCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 45788887777777777654211 11000 111110 1 125699999999999986 3334443
No 314
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.55 E-value=0.054 Score=61.32 Aligned_cols=69 Identities=20% Similarity=0.345 Sum_probs=45.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCc-cc----cc---cccchHHHHHHHHHHHhccCCeEEEEeCCc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSS-IT----SK---WFGEGEKYVKAVFSLASKIAPSVVFVDEVD 1053 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg--~pfi~I~~s~-L~----s~---~~GesE~~Ir~lF~~A~k~~PsILfIDEID 1053 (1183)
..++|.||+|+|||+|+++|+.... .-.+.++... +. .. ++.......+..+..|-...|.+|++||.-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 4699999999999999999998763 2345554322 11 01 110011233455566667889999999985
No 315
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.52 E-value=0.057 Score=57.43 Aligned_cols=32 Identities=28% Similarity=0.537 Sum_probs=28.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
+..|.|.|++|+|||++++.++..+|++++..
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 35699999999999999999999999877653
No 316
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.46 E-value=0.054 Score=56.45 Aligned_cols=31 Identities=35% Similarity=0.550 Sum_probs=27.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
..|.|.|++|+|||++++.++..+|++++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4699999999999999999999999887654
No 317
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.36 E-value=0.25 Score=51.74 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=40.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC--------ccccccccch-----HHHHHHHHHHHhccCCeEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISMS--------SITSKWFGEG-----EKYVKAVFSLASKIAPSVVF 1048 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s--------~L~s~~~Ges-----E~~Ir~lF~~A~k~~PsILf 1048 (1183)
.=.+++||.|+|||+.+..+++.+ +..++.+... .+.+. .|.. .....+++..+.. ...+|+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~-~g~~~~a~~~~~~~~i~~~~~~-~~dvVi 86 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSH-MGEKEQAVAIKNSREILKYFEE-DTEVIA 86 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECT-TSCEEECEEESSSTHHHHHCCT-TCSEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhh-cCCceeeEeeCCHHHHHHHHhc-cCCEEE
Confidence 347999999999999888877765 6666555311 01111 1100 0011244544432 357999
Q ss_pred EeCCccc
Q 001031 1049 VDEVDSM 1055 (1183)
Q Consensus 1049 IDEID~L 1055 (1183)
|||+..+
T Consensus 87 IDEaqfl 93 (191)
T 1xx6_A 87 IDEVQFF 93 (191)
T ss_dssp ECSGGGS
T ss_pred EECCCCC
Confidence 9999875
No 318
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.33 E-value=0.14 Score=51.89 Aligned_cols=19 Identities=37% Similarity=0.684 Sum_probs=17.1
Q ss_pred ceEEEEcCCCChHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKA 1003 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkA 1003 (1183)
.-+.|.||+|+|||+|+++
T Consensus 10 ei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4589999999999999994
No 319
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.33 E-value=0.057 Score=56.41 Aligned_cols=30 Identities=37% Similarity=0.469 Sum_probs=26.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
.-|.|.|++|+|||++++.++. +|++++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 4689999999999999999998 88876654
No 320
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.29 E-value=0.7 Score=55.28 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
++.-++|.|++|+|||||++.|+..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34568999999999999999999876
No 321
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.26 E-value=0.091 Score=61.66 Aligned_cols=116 Identities=11% Similarity=0.104 Sum_probs=66.8
Q ss_pred CCEEEEEcChhhhhc---CChhhHHHHHHHHhcCCCCEEEEEeccCCCcccccCCCCCceeeccCcchhhhccccCCCCc
Q 001031 704 SPLIVFVKDIEKSLT---GNNDAYGALKSKLENLPSNVVVIGSHTQLDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDNF 780 (1183)
Q Consensus 704 ~P~Ilf~~Die~~l~---~~~~~~~~i~~~L~~L~g~vivIgs~~~~d~~k~k~~~~~~~~~~~~~~~~~~~d~~~PD~~ 780 (1183)
.|-||||||++.+.. .+.+++..|....+ .|..|||++++ +|+.+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~--~~~~iIitt~~------------------------------~~~~l 241 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHD--SGKQIVICSDR------------------------------EPQKL 241 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT--TTCEEEEEESS------------------------------CGGGC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHH--CCCeEEEEECC------------------------------CHHHH
Confidence 678999999999664 24556666555444 46788888776 22211
Q ss_pred cccccccccchHHHHHhhhhCCCeEEecCCchhHHHHHHH--HHHhhhhhhhhhccchhHHHHHhhhCCCCcccchhhhc
Q 001031 781 SRLHDRSKETPKALKQISRLFPNKVTIQLPQDEALLSDWK--QQLERDVETLKGQSNIISIRSVLSRNGLDCVDLESLCI 858 (1183)
Q Consensus 781 d~~~~~~~~~~~~~~~l~~lf~~~i~i~~P~DeALlRRfe--rq~e~~Lpd~~gR~~Il~IHT~l~~~~l~~vdL~~LA~ 858 (1183)
..+ +++|++||. ..++++.|+...|..|++-+.......+++..++.|+.
T Consensus 242 ~~l----------------------------~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~ 293 (440)
T 2z4s_A 242 SEF----------------------------QDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAE 293 (440)
T ss_dssp SSC----------------------------CHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHH
T ss_pred HHH----------------------------HHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 110 113444443 33444444444444444433222222356666778887
Q ss_pred ccCCCCHHHHHHHHhhhhhhHh
Q 001031 859 KDQTLTTEGVEKIVGWALSHHF 880 (1183)
Q Consensus 859 ~tkgfsgAdIe~Lv~~A~s~al 880 (1183)
.+.| ...++..++..+..++.
T Consensus 294 ~~~g-n~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 294 NVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_dssp HCCS-CHHHHHHHHHHHHHHHH
T ss_pred hcCC-CHHHHHHHHHHHHHHHH
Confidence 7654 66788888888777664
No 322
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.17 E-value=0.052 Score=61.28 Aligned_cols=33 Identities=33% Similarity=0.540 Sum_probs=29.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~ 1017 (1183)
.-++|.||+|+|||+||..+|+.++..++..+.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 458999999999999999999999988877664
No 323
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.14 E-value=0.33 Score=61.07 Aligned_cols=59 Identities=22% Similarity=0.207 Sum_probs=33.3
Q ss_pred CcccccCcHHHHHHHHHHHHcccCCh-hhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHH
Q 001031 947 TFDDIGALENVKDTLKELVMLPLQRP-ELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 947 tfdDI~Gle~vk~~L~e~V~lpl~~~-elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
.|++++-.....+.+.+.-.+|.... +.+... ......+++.||+|+|||+++..++..
T Consensus 73 ~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~--l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 73 PFTGREFTPKYVDILKIRRELPVHAQRDEFLKL--YQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp TTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHH--HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CccccCCCHHHHHHHHHhhcCChHHHHHHHHHH--HhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45566555566666555444443211 111100 111236999999999999977776544
No 324
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.04 E-value=0.052 Score=59.49 Aligned_cols=31 Identities=39% Similarity=0.503 Sum_probs=25.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCcEEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA-GANFINI 1015 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL-g~pfi~I 1015 (1183)
.-|+|.|+||+|||++++.++..+ ++.++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~ 34 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecc
Confidence 458999999999999999999974 6655543
No 325
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.96 E-value=0.055 Score=56.19 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=23.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
+.-++|.||+|+|||++++.++..++
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 35699999999999999999999884
No 326
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.95 E-value=0.19 Score=61.53 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
+-++|.|+||||||+++.++...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 469999999999999888876554
No 327
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.90 E-value=0.05 Score=59.92 Aligned_cols=30 Identities=30% Similarity=0.406 Sum_probs=26.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
.-|.|.|++|+|||++|+.++ .+|++++..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 459999999999999999999 688876554
No 328
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.90 E-value=0.038 Score=57.28 Aligned_cols=31 Identities=29% Similarity=0.290 Sum_probs=25.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh-CCcEEE
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA-GANFIN 1014 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL-g~pfi~ 1014 (1183)
..-|.|.|++|+|||++++.|+..+ ++.++.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 3458999999999999999999977 555443
No 329
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.88 E-value=0.051 Score=62.02 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=28.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~ 1017 (1183)
.-|+|.||+|+|||+||..||..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 358999999999999999999999977666553
No 330
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=92.86 E-value=0.76 Score=47.59 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=17.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
+.+++.+|+|+|||..+-..+-.
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHH
Confidence 46999999999999866554433
No 331
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.84 E-value=0.5 Score=50.06 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=17.1
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVA 1005 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA 1005 (1183)
..+++.||+|+|||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 469999999999998665543
No 332
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.83 E-value=0.14 Score=58.06 Aligned_cols=67 Identities=27% Similarity=0.345 Sum_probs=53.5
Q ss_pred hhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEecCCC
Q 001031 462 DITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVDSLLL 530 (1183)
Q Consensus 462 e~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs~~~ 530 (1183)
+..+..|..+...|.+...............+.|||.||+| ....+||||||+.++.+++.++.+.+
T Consensus 21 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppG--tGKT~la~~ia~~~~~~~~~~~~~~l 87 (363)
T 3hws_A 21 EQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTG--SGKTLLAETLARLLDVPFTMADATTL 87 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTT--SSHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCC--CCHHHHHHHHHHHcCCCEEEechHHh
Confidence 77788888888777766544334345556678999999999 68999999999999999999987644
No 333
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.81 E-value=0.072 Score=54.24 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=21.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCC
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGA 1010 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~ 1010 (1183)
-++|.||+|+|||+|++.|+...+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999986644
No 334
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.79 E-value=0.077 Score=55.35 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=29.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCc
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSS 1019 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL----g~pfi~I~~s~ 1019 (1183)
+.-|+|.|++|+|||++++.++..+ |.+++.++...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 3568999999999999999999876 46677776433
No 335
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.67 E-value=0.43 Score=58.51 Aligned_cols=48 Identities=25% Similarity=0.346 Sum_probs=30.6
Q ss_pred cHHHHHHHHHHHHcccCChhhhhcCCCCCCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001031 954 LENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1183)
Q Consensus 954 le~vk~~L~e~V~lpl~~~elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~ 1017 (1183)
.+.+++.+...+.. + .-.||+||||||||+++..+...+ +..+..+..
T Consensus 191 N~~Q~~AV~~al~~--------------~--~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 191 DTSQKEAVLFALSQ--------------K--ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp CHHHHHHHHHHHHC--------------S--SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CHHHHHHHHHHhcC--------------C--CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 56777777665531 1 136999999999998555544433 555555543
No 336
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.66 E-value=0.27 Score=56.00 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=28.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001031 982 KPCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1183)
Q Consensus 982 kP~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~ 1017 (1183)
.+..-++|.|+||+|||+|+..+|..+ +.++..+++
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 344559999999999999999998764 677777765
No 337
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.63 E-value=0.072 Score=55.88 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~ 1014 (1183)
-|.|.|++|+|||++++.+|+.+|++|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58999999999999999999999999884
No 338
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=92.60 E-value=0.55 Score=49.32 Aligned_cols=55 Identities=22% Similarity=0.160 Sum_probs=30.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHcccCChhhhhcCC--CCCCCceEEEEcCCCChHHHHHH
Q 001031 945 GVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQ--LTKPCKGILLFGPPGTGKTMLAK 1002 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~lpl~~~elf~k~~--l~kP~~gVLL~GPPGTGKT~LAk 1002 (1183)
..+|++++-.+.+.+.|.+.-. ..+.-+.... .....+.+++.+|+|+|||..+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~---~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQY---RLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTC---CBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHCCC---CCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 3468888777777777755311 1111110000 00112579999999999998543
No 339
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.59 E-value=0.083 Score=63.38 Aligned_cols=69 Identities=26% Similarity=0.409 Sum_probs=45.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecCc-ccc---cc--------ccchHHHHHHHHHHHhccCCeEEEEe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMSS-ITS---KW--------FGEGEKYVKAVFSLASKIAPSVVFVD 1050 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg--~pfi~I~~s~-L~s---~~--------~GesE~~Ir~lF~~A~k~~PsILfID 1050 (1183)
..++|.||+|+||||++++++..+. ...+.+.... +.- .+ .+.....+..+...+-+..|.+|+++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivg 340 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVG 340 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeC
Confidence 4699999999999999999998773 3455554332 210 00 01111123445556667899999999
Q ss_pred CCc
Q 001031 1051 EVD 1053 (1183)
Q Consensus 1051 EID 1053 (1183)
|+-
T Consensus 341 Eir 343 (511)
T 2oap_1 341 EVR 343 (511)
T ss_dssp CCC
T ss_pred CcC
Confidence 984
No 340
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=92.33 E-value=0.5 Score=52.08 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=18.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
..+++.+|+|+|||..+-..+..
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHH
Confidence 47999999999999976654443
No 341
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.27 E-value=0.31 Score=57.92 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
..++|+|++|+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 369999999999999999887654
No 342
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.22 E-value=0.066 Score=60.58 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=28.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~ 1017 (1183)
.-|+|.||+|+|||+|+..+|..++..++..+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 358899999999999999999999877766654
No 343
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.12 E-value=0.17 Score=60.80 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=27.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSS 1019 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg---~pfi~I~~s~ 1019 (1183)
.-|+|.|.||+|||++|+.+|..++ .....++..+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 4589999999999999999999984 4444555443
No 344
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.07 E-value=0.081 Score=54.73 Aligned_cols=26 Identities=38% Similarity=0.370 Sum_probs=23.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
+.-+.|.||+|+|||||++.|+..++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999999887
No 345
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.07 E-value=0.088 Score=53.92 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
+.-+.|.||+|+|||++++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468999999999999999999876
No 346
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=92.05 E-value=0.41 Score=48.88 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.2
Q ss_pred ceEEEEcCCCChHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAK 1002 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAk 1002 (1183)
+.+++.+|+|+|||..+.
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997444
No 347
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.88 E-value=0.22 Score=52.65 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=26.4
Q ss_pred ceEEEEcCCCChHH-HHHHHHHHHh--CCcEEEEec
Q 001031 985 KGILLFGPPGTGKT-MLAKAVATEA--GANFINISM 1017 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT-~LAkAIA~eL--g~pfi~I~~ 1017 (1183)
.=.++|||.|+||| .|.+++.+.. +..++.+..
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 34799999999999 7999987764 677777763
No 348
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.88 E-value=0.54 Score=50.30 Aligned_cols=30 Identities=13% Similarity=0.047 Sum_probs=23.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001031 987 ILLFGPPGTGKTMLAKAVATEA---GANFINIS 1016 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~ 1016 (1183)
.+++|+.|+|||+.+-.++..+ +..++.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5799999999999887776654 66666664
No 349
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.82 E-value=0.067 Score=62.34 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=26.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~ 1014 (1183)
+.-|+|.|+||+|||++|+.++..+++.++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 3568999999999999999999998876554
No 350
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.78 E-value=0.1 Score=53.24 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=22.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
.-+.|.||+|+|||+|++.|+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999998763
No 351
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.75 E-value=0.099 Score=61.00 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=28.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEec
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINISM 1017 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~ 1017 (1183)
.-|+|.||+|+|||+|+..+|..++..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 458999999999999999999999887766543
No 352
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.63 E-value=0.089 Score=54.97 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
++.-+.|.||+|+|||+|++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 334589999999999999999998874
No 353
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.63 E-value=0.11 Score=53.22 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
.-+.|.||+|+|||||++.|+..+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999998863
No 354
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.60 E-value=0.17 Score=52.37 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=28.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s 1018 (1183)
+.-+.|.|++|+|||++++.|+..+ +.+++.++..
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 3458999999999999999999876 6677666543
No 355
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.57 E-value=1.9 Score=48.56 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~ 1017 (1183)
++.-++|.|++|+|||+++..+|..+ +..+..+++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 44669999999999999999998776 566666654
No 356
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.38 E-value=0.42 Score=54.14 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
++.-+.|.||+|+||||+++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44569999999999999999999876
No 357
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.32 E-value=0.4 Score=57.46 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=44.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccc-------------------cccc-cchHHHHHHHHHHH
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSIT-------------------SKWF-GEGEKYVKAVFSLA 1039 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~-------------------s~~~-GesE~~Ir~lF~~A 1039 (1183)
++..|+|.|++|+|||+++..+|..+ |..+..+++.... .... ......+...+..+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999776 6666666652210 0000 11122233445555
Q ss_pred hccCCeEEEEeCCccc
Q 001031 1040 SKIAPSVVFVDEVDSM 1055 (1183)
Q Consensus 1040 ~k~~PsILfIDEID~L 1055 (1183)
.+....++|||-.-.+
T Consensus 180 ~~~~~DvvIIDTpG~~ 195 (504)
T 2j37_W 180 KNENFEIIIVDTSGRH 195 (504)
T ss_dssp HHTTCCEEEEEECCCC
T ss_pred HHCCCcEEEEeCCCCc
Confidence 4455679999987544
No 358
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.29 E-value=0.079 Score=56.32 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
...+|+|.||+|+|||+||..+++... .++..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 346799999999999999999998865 555444
No 359
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=91.27 E-value=0.6 Score=59.78 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVAT 1006 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~ 1006 (1183)
.-++|.||.|+|||++.+.++.
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHH
Confidence 4589999999999999999874
No 360
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.27 E-value=1 Score=50.07 Aligned_cols=73 Identities=21% Similarity=0.180 Sum_probs=45.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc-------c--------cc-----cchHHHHHHHHHHH
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------K--------WF-----GEGEKYVKAVFSLA 1039 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s-------~--------~~-----GesE~~Ir~lF~~A 1039 (1183)
++.-+.|.|++|+|||+++..+|..+ +..+..+++..... . .+ .......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 44668889999999999999998775 55665555421100 0 00 01112234555555
Q ss_pred hccCCeEEEEeCCccc
Q 001031 1040 SKIAPSVVFVDEVDSM 1055 (1183)
Q Consensus 1040 ~k~~PsILfIDEID~L 1055 (1183)
....+.+|+||+--.+
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 5457789999997443
No 361
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.18 E-value=0.71 Score=51.40 Aligned_cols=72 Identities=19% Similarity=0.064 Sum_probs=46.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCccccc-------c------------c-cchHHHHHHHHHHHh
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITSK-------W------------F-GEGEKYVKAVFSLAS 1040 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s~-------~------------~-GesE~~Ir~lF~~A~ 1040 (1183)
+.-+++.|++|+|||+++..+|..+ +..+..+++...... + . ......+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4568899999999999999998776 666666665321100 0 0 112233345566665
Q ss_pred ccCCeEEEEeCCccc
Q 001031 1041 KIAPSVVFVDEVDSM 1055 (1183)
Q Consensus 1041 k~~PsILfIDEID~L 1055 (1183)
+....+|+||=.-.+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 456689999976543
No 362
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.06 E-value=0.48 Score=55.67 Aligned_cols=73 Identities=19% Similarity=0.193 Sum_probs=47.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHHh----CCcEEEEecCccccc----------------cc-c---chHHHHHHHHH
Q 001031 982 KPCKGILLFGPPGTGKTMLAKAVATEA----GANFINISMSSITSK----------------WF-G---EGEKYVKAVFS 1037 (1183)
Q Consensus 982 kP~~gVLL~GPPGTGKT~LAkAIA~eL----g~pfi~I~~s~L~s~----------------~~-G---esE~~Ir~lF~ 1037 (1183)
.+++.|++.|++|+|||+++..+|..+ |..+..+++...... +. + .....+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345779999999999999999998765 677777776532110 00 0 11233355566
Q ss_pred HHhccCCeEEEEeCCcc
Q 001031 1038 LASKIAPSVVFVDEVDS 1054 (1183)
Q Consensus 1038 ~A~k~~PsILfIDEID~ 1054 (1183)
.+.+..-.++|||=.-+
T Consensus 178 ~~~~~~~D~VIIDTpG~ 194 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGR 194 (433)
T ss_dssp HHHHTTCSEEEEECCCC
T ss_pred HHHhCCCCEEEEECCCc
Confidence 66544567999997543
No 363
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.04 E-value=0.11 Score=53.99 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
+..-+.|.||+|+|||||++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 335689999999999999999998874
No 364
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.74 E-value=0.17 Score=52.75 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
.|+|.||+|+|||+|++.+.....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 499999999999999999988764
No 365
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.70 E-value=0.13 Score=53.37 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=22.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
...+.|.||+|+|||+|++.|+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35699999999999999999998763
No 366
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.69 E-value=0.17 Score=54.70 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINI 1015 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I 1015 (1183)
..+-|.|+||+|||++|+.|+..++++++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 3588999999999999999999999887754
No 367
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.56 E-value=0.075 Score=54.85 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=22.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
-|.|.|++|+||||+++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999884
No 368
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=90.48 E-value=0.64 Score=49.16 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=30.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHc-ccCCh-hhhhcCCCCCCCceEEEEcCCCChHHHHHH
Q 001031 945 GVTFDDIGALENVKDTLKELVML-PLQRP-ELFCKGQLTKPCKGILLFGPPGTGKTMLAK 1002 (1183)
Q Consensus 945 ~~tfdDI~Gle~vk~~L~e~V~l-pl~~~-elf~k~~l~kP~~gVLL~GPPGTGKT~LAk 1002 (1183)
..+|++++-.+.+.+.|.+.-.. |...+ +.+.. +. ..+.+++.+|+|+|||..+.
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~--i~-~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIP--CI-KGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHH--HH-TTCCEEECCCSSHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH--Hh-CCCCEEEECCCCCcHHHHHH
Confidence 45688887667777666543111 11111 11111 01 12469999999999997643
No 369
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.43 E-value=1.1 Score=53.68 Aligned_cols=73 Identities=21% Similarity=0.247 Sum_probs=47.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcc----ccc---------------ccc---------chHHH
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSI----TSK---------------WFG---------EGEKY 1031 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L----~s~---------------~~G---------esE~~ 1031 (1183)
+..-++|.||+|+|||+|++.++... |..++.+...+- ... ... .....
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~ 359 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDH 359 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHH
Confidence 33568999999999999999998665 445555543221 000 000 12344
Q ss_pred HHHHHHHHhccCCeEEEEeCCccc
Q 001031 1032 VKAVFSLASKIAPSVVFVDEVDSM 1055 (1183)
Q Consensus 1032 Ir~lF~~A~k~~PsILfIDEID~L 1055 (1183)
.+.++..+....|.+|+||=+..|
T Consensus 360 q~~~~a~~l~~~p~llilDp~~~L 383 (525)
T 1tf7_A 360 LQIIKSEINDFKPARIAIDSLSAL 383 (525)
T ss_dssp HHHHHHHHHTTCCSEEEEECHHHH
T ss_pred HHHHHHHHHhhCCCEEEEcChHHH
Confidence 555666677788999999966655
No 370
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=90.42 E-value=0.18 Score=61.85 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=30.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~ 1017 (1183)
.-|+|.|.+|+|||++|++++..+ |.+++.++.
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 459999999999999999999999 999998874
No 371
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.39 E-value=0.15 Score=52.11 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
-+.|.||+|+|||+|++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999998763
No 372
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.34 E-value=1.1 Score=53.55 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=24.6
Q ss_pred CCceEEEEcCCCChHHHHHHHH--HHHh--CCcEEEEec
Q 001031 983 PCKGILLFGPPGTGKTMLAKAV--ATEA--GANFINISM 1017 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAI--A~eL--g~pfi~I~~ 1017 (1183)
+..-++|.||+|+|||+|++.+ +... +-..+.++.
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 4456999999999999999994 3332 334455543
No 373
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.33 E-value=1.2 Score=52.23 Aligned_cols=73 Identities=21% Similarity=0.150 Sum_probs=45.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecCcccc-------c---------cc-c---chHHHHHHHHHHH
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA---GANFINISMSSITS-------K---------WF-G---EGEKYVKAVFSLA 1039 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s~L~s-------~---------~~-G---esE~~Ir~lF~~A 1039 (1183)
++..++|.|++|+|||+++..+|..+ +..+..+++..... . +. + .....+...+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999876 55666665432110 0 00 0 1122234555655
Q ss_pred hccCCeEEEEeCCccc
Q 001031 1040 SKIAPSVVFVDEVDSM 1055 (1183)
Q Consensus 1040 ~k~~PsILfIDEID~L 1055 (1183)
+...-.+++||=.-++
T Consensus 177 ~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 177 RLEARDLILVDTAGRL 192 (425)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HHCCCCEEEEcCCCcc
Confidence 4445579999866443
No 374
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=90.22 E-value=0.17 Score=54.15 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=27.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFIN 1014 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~ 1014 (1183)
.-|.|.|++|||||++++.+|..+|++|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 358999999999999999999999999865
No 375
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=90.18 E-value=0.64 Score=51.75 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=16.6
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAV 1004 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAI 1004 (1183)
+.+|+.+|+|+|||..+-..
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 67999999999999865433
No 376
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=89.96 E-value=0.24 Score=56.21 Aligned_cols=68 Identities=29% Similarity=0.419 Sum_probs=52.6
Q ss_pred hhHHHHHHhhhhhhcccccccc---------------ccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCCeEEEEe
Q 001031 462 DITKNVLIASTYVHLKCNNFAK---------------YASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSARLLIVD 526 (1183)
Q Consensus 462 e~tk~~L~~~~~~hLk~~~~~k---------------~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilD 526 (1183)
++.|..|..+.+.|++...... -........+.|||.||+| ....+|||+||+.++.++..+|
T Consensus 27 ~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~G--tGKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 27 EQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTG--SGKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTT--SSHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCC--CCHHHHHHHHHHHhCCCEEEec
Confidence 8889999999888877644210 0012344567899999999 7999999999999999999999
Q ss_pred cCCCC
Q 001031 527 SLLLP 531 (1183)
Q Consensus 527 s~~~~ 531 (1183)
...+.
T Consensus 105 ~~~~~ 109 (376)
T 1um8_A 105 ATSLT 109 (376)
T ss_dssp GGGCC
T ss_pred chhhh
Confidence 87653
No 377
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.94 E-value=0.24 Score=58.26 Aligned_cols=35 Identities=34% Similarity=0.336 Sum_probs=28.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEecC
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISMS 1018 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~s 1018 (1183)
+..|+|.|++|+|||+++..+|..+ |..+..+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4579999999999999999999876 5666666654
No 378
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=89.86 E-value=0.91 Score=47.12 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.2
Q ss_pred ceEEEEcCCCChHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAK 1002 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAk 1002 (1183)
+.+++.+|+|+|||..+.
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 469999999999998543
No 379
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=89.73 E-value=1.1 Score=47.91 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.3
Q ss_pred ceEEEEcCCCChHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAK 1002 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAk 1002 (1183)
+.+++.+|+|+|||..+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 579999999999998543
No 380
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=89.66 E-value=1.5 Score=46.31 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
..|+|.|++|+|||+|+.+|...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 56999999999999999999754
No 381
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=89.65 E-value=1.2 Score=46.39 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.2
Q ss_pred ceEEEEcCCCChHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAK 1002 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAk 1002 (1183)
+.+++.+|+|+|||..+.
T Consensus 58 ~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999997543
No 382
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=89.62 E-value=0.81 Score=48.41 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=15.3
Q ss_pred ceEEEEcCCCChHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAK 1002 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAk 1002 (1183)
+.+++.+|+|+|||..+.
T Consensus 67 ~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCEEEEECTTSCHHHHHH
T ss_pred CCEEEECCCcCHHHHHHH
Confidence 479999999999998643
No 383
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=89.58 E-value=0.97 Score=58.01 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=19.0
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVA 1005 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA 1005 (1183)
.-++|.||.|+|||++.+.++
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999985
No 384
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=89.52 E-value=0.33 Score=50.52 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=28.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHhCCcEEEEecCc
Q 001031 987 ILLFGPPGTGKTMLAKAVATEAGANFINISMSS 1019 (1183)
Q Consensus 987 VLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s~ 1019 (1183)
+|++|++|+|||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 799999999999999999987 88888887654
No 385
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.31 E-value=0.28 Score=50.15 Aligned_cols=41 Identities=17% Similarity=0.316 Sum_probs=32.6
Q ss_pred CCCCEEEEEcChhhhhcCChhhHHHHHHHHhcCCCCEEEEEecc
Q 001031 702 KSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHT 745 (1183)
Q Consensus 702 ~~~P~Ilf~~Die~~l~~~~~~~~~i~~~L~~L~g~vivIgs~~ 745 (1183)
..+|.||+|||++.+ ..+....|...|+..+.++++|.+++
T Consensus 124 ~~~~~vlviDe~~~l---~~~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 124 RGRFKVYLIDEVHML---SRHSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SSSSEEEEEETGGGS---CHHHHHHHHHHHHSCCTTEEEEEEES
T ss_pred cCCceEEEEECcccc---cHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 357899999999995 34555667778888788899999888
No 386
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=89.22 E-value=0.34 Score=53.72 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=28.5
Q ss_pred CCCceeecCCCCchHHHHHHHHHHHhhc---CCeEEEEe
Q 001031 491 MCPRILLSGPAGSEIYQETLAKALAKHF---SARLLIVD 526 (1183)
Q Consensus 491 ~s~rILLsgp~GsE~Yqe~LaKALA~~f---~a~LLilD 526 (1183)
..+-+||.||+| ....+||+|+|+++ +.+++.++
T Consensus 36 ~~~~lll~G~~G--tGKT~la~~i~~~~~~~~~~~~~i~ 72 (324)
T 1l8q_A 36 LYNPIFIYGSVG--TGKTHLLQAAGNEAKKRGYRVIYSS 72 (324)
T ss_dssp SCSSEEEECSSS--SSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCC--CcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 346799999999 79999999999998 66666665
No 387
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=89.17 E-value=1.3 Score=51.74 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=18.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
+.+|+.+|+|+|||..+-..+..
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~ 42 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEH 42 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 46999999999999876655543
No 388
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.04 E-value=0.26 Score=49.90 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
+..-+.|.||.|+|||+|++.|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 33458999999999999999999987
No 389
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=88.98 E-value=2.4 Score=53.64 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
+..-++|.||.|+|||++.+.|+..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3346899999999999999999754
No 390
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.94 E-value=0.39 Score=54.81 Aligned_cols=69 Identities=22% Similarity=0.344 Sum_probs=44.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEEecC-cccc----c---ccc-c-------hHHHHHHHHHHHhccCCeE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINISMS-SITS----K---WFG-E-------GEKYVKAVFSLASKIAPSV 1046 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg--~pfi~I~~s-~L~s----~---~~G-e-------sE~~Ir~lF~~A~k~~PsI 1046 (1183)
..++|.||+|+|||||+++|+.... .-.+.+... ++.- . ++- . ....++..+..+.+..|.+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~ 255 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTR 255 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCE
Confidence 4699999999999999999998763 234444421 1110 0 110 0 1112455666667778999
Q ss_pred EEEeCCc
Q 001031 1047 VFVDEVD 1053 (1183)
Q Consensus 1047 LfIDEID 1053 (1183)
++++|+.
T Consensus 256 ~l~~e~r 262 (361)
T 2gza_A 256 ILLAELR 262 (361)
T ss_dssp EEESCCC
T ss_pred EEEcCch
Confidence 9999985
No 391
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.93 E-value=0.26 Score=52.65 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=26.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC--CcEEEE
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG--ANFINI 1015 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg--~pfi~I 1015 (1183)
.-|.|.|++|+||||+++.++..++ ..++..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 4589999999999999999999986 455544
No 392
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.89 E-value=0.44 Score=53.19 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
++.-+.|.||+|+||||+++.||..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44568999999999999999999876
No 393
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=88.88 E-value=1.4 Score=47.34 Aligned_cols=25 Identities=20% Similarity=0.514 Sum_probs=21.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
+...|+|.|.+|+|||+|+.+|...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 3457999999999999999998643
No 394
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.84 E-value=0.15 Score=56.54 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=26.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC---CcEEEEecCccc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG---ANFINISMSSIT 1021 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg---~pfi~I~~s~L~ 1021 (1183)
.-|.|.||+|+|||++++.++..++ ..+..+++.++.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 3589999999999999999998775 455566655543
No 395
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=88.81 E-value=0.76 Score=53.54 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=21.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
..++|+||+|+|||+|++.|++..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 469999999999999999998765
No 396
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=88.74 E-value=0.26 Score=51.24 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=22.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
.-+.|.||+|+|||+|+++|+..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998874
No 397
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=88.63 E-value=1.2 Score=50.43 Aligned_cols=32 Identities=28% Similarity=0.472 Sum_probs=24.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh----CCcEEEEec
Q 001031 986 GILLFGPPGTGKTMLAKAVATEA----GANFINISM 1017 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eL----g~pfi~I~~ 1017 (1183)
++||.+|+|+|||..+-.++... +..++.+..
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 79999999999999887776554 555555543
No 398
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=88.62 E-value=0.26 Score=51.98 Aligned_cols=25 Identities=24% Similarity=0.569 Sum_probs=22.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
+-+.|.||+|+|||+|+++|+....
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999998764
No 399
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=88.54 E-value=0.29 Score=52.32 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=23.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGAN 1011 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~p 1011 (1183)
.-+-|.||.|+|||||++.|+..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 458899999999999999999988754
No 400
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=88.52 E-value=0.91 Score=51.50 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=25.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 1016 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~ 1016 (1183)
..|.|.|+||+|||+|+.+++..+ |..+..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 569999999999999999998876 55554444
No 401
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=88.49 E-value=0.26 Score=51.99 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=22.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
.-+.|.||+|+|||+|++.|+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 458999999999999999999876
No 402
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=88.45 E-value=1.5 Score=45.99 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=28.7
Q ss_pred CCcccccCcHHHHHHHHHHHHc-ccCCh-hhhhcCCCCCCCceEEEEcCCCChHHHHH
Q 001031 946 VTFDDIGALENVKDTLKELVML-PLQRP-ELFCKGQLTKPCKGILLFGPPGTGKTMLA 1001 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~l-pl~~~-elf~k~~l~kP~~gVLL~GPPGTGKT~LA 1001 (1183)
.+|++++-.+.+.+.|.+.-.. |...+ +.+.. ....+.+++.+|+|+|||..+
T Consensus 24 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~---~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 24 ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPL---GRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHH---HHTTCCEEEECCTTSSHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHH---HhCCCCEEEECCCCCcHHHHH
Confidence 4677776666666666542110 11000 01110 011257999999999999863
No 403
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=88.25 E-value=3.4 Score=45.99 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=17.0
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVA 1005 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA 1005 (1183)
..+|+.+|+|+|||..+-..+
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 579999999999998664443
No 404
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=88.22 E-value=2.1 Score=52.93 Aligned_cols=19 Identities=37% Similarity=0.553 Sum_probs=16.4
Q ss_pred CceEEEEcCCCChHHHHHH
Q 001031 984 CKGILLFGPPGTGKTMLAK 1002 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAk 1002 (1183)
...+|+.||+|+|||..+.
T Consensus 39 ~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAE 57 (720)
T ss_dssp TCEEEEECCGGGCHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 3679999999999998773
No 405
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=88.17 E-value=6.3 Score=37.85 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 001031 986 GILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
.|+|.|++|+|||+|+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999764
No 406
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=87.89 E-value=0.59 Score=48.33 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=23.2
Q ss_pred CCceeecCCCCchHHHHHHHHHHHhhcC
Q 001031 492 CPRILLSGPAGSEIYQETLAKALAKHFS 519 (1183)
Q Consensus 492 s~rILLsgp~GsE~Yqe~LaKALA~~f~ 519 (1183)
.+.|||.||+| ....+||+++|+.+.
T Consensus 52 ~~~~ll~G~~G--~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 52 VQAIYLWGPVK--SGRTHLIHAACARAN 77 (242)
T ss_dssp CSEEEEECSTT--SSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCC--CCHHHHHHHHHHHHH
Confidence 47899999999 789999999998776
No 407
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=87.81 E-value=0.36 Score=56.16 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEecC
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINISMS 1018 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~~s 1018 (1183)
.+||.+|+|+|||..+-.++...+..++.+...
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 599999999999999988888877777666543
No 408
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=87.69 E-value=2 Score=48.31 Aligned_cols=56 Identities=23% Similarity=0.123 Sum_probs=29.7
Q ss_pred CCcccccCcHHHHHHHHHHHHc-ccCCh-hhhhcCCCCCCCceEEEEcCCCChHHHHHHHH
Q 001031 946 VTFDDIGALENVKDTLKELVML-PLQRP-ELFCKGQLTKPCKGILLFGPPGTGKTMLAKAV 1004 (1183)
Q Consensus 946 ~tfdDI~Gle~vk~~L~e~V~l-pl~~~-elf~k~~l~kP~~gVLL~GPPGTGKT~LAkAI 1004 (1183)
.+|++++-...+.+.|.+.-.. |...+ +.+... . ..+.+++.+|+|+|||..+-..
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i--~-~~~~~li~a~TGsGKT~~~~~~ 78 (400)
T 1s2m_A 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVA--I-TGRDILARAKNGTGKTAAFVIP 78 (400)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHH--H-HTCCEEEECCTTSCHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH--h-cCCCEEEECCCCcHHHHHHHHH
Confidence 4677776666666666542110 00000 001000 0 1146999999999999855443
No 409
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=87.57 E-value=0.23 Score=55.15 Aligned_cols=27 Identities=22% Similarity=0.264 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
++.-|.|.|++|+|||+|++.|+..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 335689999999999999999998875
No 410
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=87.48 E-value=1.8 Score=43.39 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=21.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
...|+|.|++|+|||+|+..+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 356999999999999999999854
No 411
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.33 E-value=0.35 Score=54.34 Aligned_cols=30 Identities=30% Similarity=0.561 Sum_probs=24.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcE
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEAGANF 1012 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eLg~pf 1012 (1183)
+...+.|+||+|+|||+|++.|+..+...+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 445699999999999999999999874333
No 412
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=87.30 E-value=0.35 Score=51.47 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
..-+.|.||+|+|||+|+++|+....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34589999999999999999998764
No 413
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=87.23 E-value=0.83 Score=45.61 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=21.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
...|+|.|++|+|||+|..+++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999999999864
No 414
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=87.22 E-value=2.2 Score=47.07 Aligned_cols=52 Identities=19% Similarity=0.146 Sum_probs=36.6
Q ss_pred ccccccccccchhhHHHHHHhhhhhhccccccccccCCCCCCCCceeecCCCCchHHHHHHHHHHHhhcCC
Q 001031 450 EVSFESFPYYLSDITKNVLIASTYVHLKCNNFAKYASDLPTMCPRILLSGPAGSEIYQETLAKALAKHFSA 520 (1183)
Q Consensus 450 ~vsfd~FPYylse~tk~~L~~~~~~hLk~~~~~k~~~~l~~~s~rILLsgp~GsE~Yqe~LaKALA~~f~a 520 (1183)
..+|++|.-. ++.+..|..+...+ ..+-|||.||+| ....+|||+||+.++-
T Consensus 20 ~~~f~~i~G~--~~~~~~l~~~~~~~---------------~~~~vLl~G~~G--tGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 20 VFPFSAIVGQ--EDMKLALLLTAVDP---------------GIGGVLVFGDRG--TGKSTAVRALAALLPE 71 (350)
T ss_dssp CCCGGGSCSC--HHHHHHHHHHHHCG---------------GGCCEEEECCGG--GCTTHHHHHHHHHSCC
T ss_pred CCCchhccCh--HHHHHHHHHHhhCC---------------CCceEEEECCCC--ccHHHHHHHHHHhCcc
Confidence 3578886443 66666655444321 123499999999 7899999999998864
No 415
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=87.21 E-value=0.16 Score=54.79 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=25.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh-CCcEE
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA-GANFI 1013 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL-g~pfi 1013 (1183)
.+.-|.|.|++|+||||+++.|+..+ +..++
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 33569999999999999999999998 54443
No 416
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.17 E-value=0.39 Score=51.02 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=23.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-CCc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA-GAN 1011 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL-g~p 1011 (1183)
.-|.|.|++|+|||++++.++..+ +..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~~~~ 30 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYPEWH 30 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCe
Confidence 468999999999999999999998 443
No 417
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=87.17 E-value=0.42 Score=58.16 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=30.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecCc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG----ANFINISMSS 1019 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg----~pfi~I~~s~ 1019 (1183)
.-|+|.|++|+|||++|+++++.++ .+++.++...
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 4689999999999999999999985 7888887543
No 418
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=87.14 E-value=0.83 Score=49.48 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
..|.|.|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999754
No 419
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=87.10 E-value=1.7 Score=48.34 Aligned_cols=55 Identities=13% Similarity=0.111 Sum_probs=37.0
Q ss_pred HHHHHHHHhhccCCCCEEEEEcChhhhhcC--ChhhHHHHHHHHhcC--CCCEEEEEeccC
Q 001031 690 INELFEVALNESKSSPLIVFVKDIEKSLTG--NNDAYGALKSKLENL--PSNVVVIGSHTQ 746 (1183)
Q Consensus 690 ~~~l~evl~s~~~~~P~Ilf~~Die~~l~~--~~~~~~~i~~~L~~L--~g~vivIgs~~~ 746 (1183)
++.+++.+.. ...|.||+|||++.+... .++.+..+...++.+ ..+++|||++|.
T Consensus 118 ~~~l~~~l~~--~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 118 YERLVKRLSR--LRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHHTT--SCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHHHhc--cCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 5566666643 346999999999997665 456655555555555 568999999993
No 420
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=86.86 E-value=0.65 Score=47.77 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=25.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 1016 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~ 1016 (1183)
.-+.|.|++|+|||+|+..++..+ |..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 468999999999999999998876 55554444
No 421
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.77 E-value=0.58 Score=49.57 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=26.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA---GANFINIS 1016 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~ 1016 (1183)
.-|.|.|++|+|||++++.++..+ +.+++...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 458999999999999999999887 56666554
No 422
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=86.69 E-value=0.49 Score=49.31 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=23.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhCCcE
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEAGANF 1012 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eLg~pf 1012 (1183)
..+|||.|++|+|||++|.++... |..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 468999999999999999999874 5443
No 423
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=86.68 E-value=0.66 Score=46.56 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
....|+|.|++|+|||+|+.++....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33579999999999999999998653
No 424
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=86.64 E-value=0.69 Score=53.07 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
++.-++|.||+|+||||+++.||..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 44569999999999999999999876
No 425
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=86.56 E-value=2.7 Score=51.79 Aligned_cols=20 Identities=40% Similarity=0.723 Sum_probs=17.0
Q ss_pred CceEEEEcCCCChHHHHHHH
Q 001031 984 CKGILLFGPPGTGKTMLAKA 1003 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkA 1003 (1183)
...+|+.||+|+|||+.+..
T Consensus 46 ~~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEcCCCCcHHHHHHH
Confidence 36799999999999998743
No 426
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.39 E-value=0.39 Score=48.38 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhC
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
-.+|+||.|+|||+|+++|+-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 479999999999999999998775
No 427
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=86.26 E-value=0.26 Score=51.97 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=15.6
Q ss_pred ceEEEEcCCCChHHHHHHHHH-HHh
Q 001031 985 KGILLFGPPGTGKTMLAKAVA-TEA 1008 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA-~eL 1008 (1183)
.-+.|.||+|+|||+|++.|+ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 458999999999999999999 765
No 428
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=85.97 E-value=1.5 Score=52.75 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=20.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
.++||++|+|+|||..+-.++..+
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHHHHH
Confidence 468999999999999887776654
No 429
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=85.62 E-value=0.49 Score=47.86 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=31.8
Q ss_pred CCCCEEEEEcChhhhhcCChhhHHHHHHHHhcCCCCEEEEEecc
Q 001031 702 KSSPLIVFVKDIEKSLTGNNDAYGALKSKLENLPSNVVVIGSHT 745 (1183)
Q Consensus 702 ~~~P~Ilf~~Die~~l~~~~~~~~~i~~~L~~L~g~vivIgs~~ 745 (1183)
...+.||+|+|++.+-. +....|...|+....++++|++++
T Consensus 100 ~~~~~vliiDe~~~l~~---~~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 100 GAPFKIIFLDEADALTA---DAQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp TCSCEEEEEETGGGSCH---HHHHHHHHHHHHTTTTEEEEEEES
T ss_pred ccCceEEEEeChhhcCH---HHHHHHHHHHHhcCCCCeEEEEeC
Confidence 36789999999999533 344556777787788898998888
No 430
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=85.54 E-value=1.4 Score=49.71 Aligned_cols=56 Identities=18% Similarity=0.118 Sum_probs=30.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHHccc-CCh-hhhhcCCCCCCCceEEEEcCCCChHHHHHH
Q 001031 944 IGVTFDDIGALENVKDTLKELVMLPL-QRP-ELFCKGQLTKPCKGILLFGPPGTGKTMLAK 1002 (1183)
Q Consensus 944 ~~~tfdDI~Gle~vk~~L~e~V~lpl-~~~-elf~k~~l~kP~~gVLL~GPPGTGKT~LAk 1002 (1183)
...+|+++.-...+.+.|.+.-...+ ..+ +.+.. +. ..+.+++.+|+|+|||..+-
T Consensus 38 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~--~~-~~~~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 38 IVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILP--CI-KGYDVIAQAQSGTGKTATFA 95 (414)
T ss_dssp CCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHH--HH-TTCCEEECCCSCSSSHHHHH
T ss_pred hhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHH--Hh-CCCCEEEECCCCCcccHHHH
Confidence 34567777777777766655211100 000 11100 01 12469999999999998643
No 431
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=85.50 E-value=0.28 Score=57.86 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=23.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGA 1010 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~ 1010 (1183)
.-|+|.|.||+|||++++.++..++.
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 56999999999999999999998743
No 432
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=85.48 E-value=0.51 Score=52.77 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
+.-+.|.||+|+||||+++.||..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4568999999999999999999876
No 433
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=85.47 E-value=0.43 Score=53.15 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
.-+.|.||+|+|||||++.|+..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4589999999999999999999875
No 434
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=85.40 E-value=0.5 Score=53.04 Aligned_cols=27 Identities=19% Similarity=0.069 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhC
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
++.-+.|.||+|+|||||++.|+..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 334589999999999999999998773
No 435
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=85.35 E-value=1.5 Score=49.65 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
..-+.|.||||+|||+|.++++..+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468999999999999999998765
No 436
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=85.17 E-value=2.5 Score=45.78 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=21.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh---CCcEEEEe
Q 001031 986 GILLFGPPGTGKTMLAKAVATEA---GANFINIS 1016 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~ 1016 (1183)
=.+++|+.|+|||+.+-..+... |..++.+.
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999997555444433 55555554
No 437
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=84.74 E-value=0.96 Score=52.66 Aligned_cols=17 Identities=35% Similarity=0.301 Sum_probs=15.1
Q ss_pred ceEEEEcCCCChHHHHH
Q 001031 985 KGILLFGPPGTGKTMLA 1001 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LA 1001 (1183)
+.+|+.||+|+|||..+
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 47999999999999865
No 438
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=84.60 E-value=0.47 Score=50.50 Aligned_cols=30 Identities=37% Similarity=0.525 Sum_probs=27.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 986 GILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
.|-|+|..|||||++++.++. +|++++..+
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 589999999999999999998 999887655
No 439
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=84.53 E-value=0.46 Score=58.16 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001031 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
.+||.||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999877766543
No 440
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=84.45 E-value=1.9 Score=43.10 Aligned_cols=24 Identities=46% Similarity=0.552 Sum_probs=20.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
...|+|.|++|+|||+|...+...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999998754
No 441
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=84.34 E-value=3.8 Score=45.22 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=28.9
Q ss_pred CceeecCCCCchHHHHHHHHHHHhhcCCeEEEEec
Q 001031 493 PRILLSGPAGSEIYQETLAKALAKHFSARLLIVDS 527 (1183)
Q Consensus 493 ~rILLsgp~GsE~Yqe~LaKALA~~f~a~LLilDs 527 (1183)
+.|||.||+| ....+||||||+.++.++..+..
T Consensus 47 ~~vll~G~pG--tGKT~la~~la~~~~~~~~~i~~ 79 (331)
T 2r44_A 47 GHILLEGVPG--LAKTLSVNTLAKTMDLDFHRIQF 79 (331)
T ss_dssp CCEEEESCCC--HHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECCCC--CcHHHHHHHHHHHhCCCeEEEec
Confidence 5799999999 79999999999999888766653
No 442
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=84.33 E-value=1.3 Score=47.93 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHH
Q 001031 986 GILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
.|+|.|.||+|||+|..++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999754
No 443
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=84.33 E-value=0.57 Score=45.16 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
..|++.|++|+|||+|+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999764
No 444
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=84.21 E-value=0.68 Score=49.71 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=23.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh-------CCcEEEEe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA-------GANFINIS 1016 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL-------g~pfi~I~ 1016 (1183)
.-|.|.|++|+|||++++.+++.+ |.+++...
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 458999999999999999999887 66665544
No 445
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=84.16 E-value=2.3 Score=47.96 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
...+.|.|+||+|||+|+.+++..+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999998765
No 446
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=84.07 E-value=1.3 Score=51.69 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=15.6
Q ss_pred CceEEEEcCCCChHHHHH
Q 001031 984 CKGILLFGPPGTGKTMLA 1001 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LA 1001 (1183)
.+.+|+.||+|+|||..+
T Consensus 131 ~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCEEEEECCSSSSHHHHH
T ss_pred CCcEEEEcCCCCchhHHH
Confidence 368999999999999763
No 447
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=84.00 E-value=0.72 Score=44.90 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
....|++.|++|+|||+|+.++...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999753
No 448
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.98 E-value=0.65 Score=47.75 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=21.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
..|+|.|++|+|||+|+.++....
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 579999999999999999998764
No 449
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=83.93 E-value=0.51 Score=50.61 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
+..-+.|.||.|+|||||++.|+...
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 33458999999999999999998765
No 450
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=83.90 E-value=0.59 Score=48.09 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
.-+.|.|++|+|||+|++.++..+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998775
No 451
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=83.88 E-value=0.52 Score=50.66 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
+..-+.|.||.|+|||||++.|+..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999998765
No 452
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=83.88 E-value=0.79 Score=51.79 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=23.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
+.-+.|.||+|+|||||++.|+..++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34689999999999999999998875
No 453
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=83.60 E-value=3.1 Score=48.72 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=18.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
..+|+.+|+|+|||..+-..+..
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~ 45 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEH 45 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHH
Confidence 46999999999999876655433
No 454
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=83.59 E-value=0.65 Score=54.78 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=19.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVAT 1006 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~ 1006 (1183)
+-.++.|+||||||+++..++.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCC
T ss_pred cEEEEEcCCCCCHHHHHHHHhc
Confidence 4479999999999999988765
No 455
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=83.34 E-value=0.98 Score=48.13 Aligned_cols=32 Identities=28% Similarity=0.223 Sum_probs=26.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCcEEEEe
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGANFINIS 1016 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~pfi~I~ 1016 (1183)
.-|.|.|++|+|||++++.++..++.+...+.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ 37 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCKLLK 37 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccceEEE
Confidence 45899999999999999999999987544433
No 456
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=83.30 E-value=0.61 Score=47.50 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
..++|.|++|+|||+|++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
No 457
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=83.28 E-value=0.48 Score=57.35 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=28.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHhC----CcEEEEecCcc
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEAG----ANFINISMSSI 1020 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eLg----~pfi~I~~s~L 1020 (1183)
...+.|.|++|+|||||+++|+..++ ..+..++...+
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 35689999999999999999999884 34555665443
No 458
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=83.26 E-value=0.48 Score=50.42 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
.-+.|.||.|+|||||++.|+...
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999998765
No 459
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=83.15 E-value=0.66 Score=52.70 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=24.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCCc
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGAN 1011 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~p 1011 (1183)
..+.|.||+|+|||||++.|+..+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 569999999999999999999987654
No 460
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=82.99 E-value=0.65 Score=50.10 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=21.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
.-+.|.||.|+|||||.+.|+...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999765
No 461
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=82.92 E-value=0.71 Score=44.73 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
..|++.|++|+|||+|+.++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 462
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=82.89 E-value=1.2 Score=46.08 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
..|+|.|.+|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 568999999999999999999875
No 463
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=82.88 E-value=0.61 Score=47.43 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
..+.|.|++|+|||+|++.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999998754
No 464
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=82.85 E-value=0.8 Score=47.26 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAG 1009 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg 1009 (1183)
..++|.|++|+|||+|+..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999998863
No 465
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=82.82 E-value=1.7 Score=42.86 Aligned_cols=53 Identities=21% Similarity=0.393 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhccCCCCEEEEEcChhhhhc------CChhhHHHHHHHHhcCCCCEEEEEecc
Q 001031 689 AINELFEVALNESKSSPLIVFVKDIEKSLT------GNNDAYGALKSKLENLPSNVVVIGSHT 745 (1183)
Q Consensus 689 ~~~~l~evl~s~~~~~P~Ilf~~Die~~l~------~~~~~~~~i~~~L~~L~g~vivIgs~~ 745 (1183)
.+..+++.+.. ..+|.||||||++.+.. .+.++.+.|...++ .++++||+++|
T Consensus 102 ~~~~~~~~~~~--~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~--~~~~~ii~~~~ 160 (187)
T 2p65_A 102 RLKSILKEVQD--AEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLA--RGELRCIGATT 160 (187)
T ss_dssp HHHHHHHHHHH--TTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHH--TTCSCEEEEEC
T ss_pred HHHHHHHHHHh--cCCceEEEEeCHHHhcccccccccchHHHHHHHHHHh--cCCeeEEEecC
Confidence 35555555544 14799999999999752 23677777777777 47899999998
No 466
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=82.79 E-value=0.7 Score=44.53 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
..|++.|++|+|||+|+.++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999864
No 467
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=82.76 E-value=0.6 Score=50.24 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
+..-+.|.||.|+|||||++.|+...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33558999999999999999998654
No 468
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=82.70 E-value=2.4 Score=45.61 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.2
Q ss_pred ceEEEEcCCCChHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAK 1002 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAk 1002 (1183)
+.+|+.+|+|+|||..+.
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 469999999999998543
No 469
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=82.56 E-value=1.7 Score=47.03 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=19.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVAT 1006 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~ 1006 (1183)
..|+|.|+||+|||+|..++..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 4699999999999999999975
No 470
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=82.53 E-value=1.7 Score=47.62 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
..|.|.|+||+|||+|..++...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999753
No 471
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=82.49 E-value=0.49 Score=49.97 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
.-+.|.||.|+|||||++.|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999999865
No 472
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=82.40 E-value=2.2 Score=44.96 Aligned_cols=17 Identities=35% Similarity=0.640 Sum_probs=14.7
Q ss_pred ceEEEEcCCCChHHHHH
Q 001031 985 KGILLFGPPGTGKTMLA 1001 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LA 1001 (1183)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 46999999999999853
No 473
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=82.37 E-value=0.73 Score=44.23 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=21.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
..|++.|++|+|||+|+.++....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 369999999999999999998653
No 474
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=82.37 E-value=0.76 Score=44.24 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
..|+|.|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999998764
No 475
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=82.36 E-value=1.8 Score=54.42 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
.-++|.||.|+|||++.+.|+..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 45899999999999999999754
No 476
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=82.35 E-value=3.9 Score=43.97 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
..|+|.|.+|+|||+|+.++...
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999854
No 477
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=82.31 E-value=0.64 Score=50.75 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
.-+.|.||.|+|||||++.|+..+
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999998765
No 478
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=82.31 E-value=1.1 Score=51.14 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=27.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh---CCcEEEEec
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA---GANFINISM 1017 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL---g~pfi~I~~ 1017 (1183)
..++++.||+|+|||++++.++..+ +..++.++.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 3579999999999999999987654 566666653
No 479
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=82.30 E-value=2.5 Score=55.21 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=17.2
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVA 1005 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA 1005 (1183)
..+|+.||+|+|||..+...+
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i 220 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAI 220 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHH
Confidence 479999999999998765443
No 480
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=82.24 E-value=0.76 Score=51.88 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=24.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHhCCcEE
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEAGANFI 1013 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eLg~pfi 1013 (1183)
...++||.|++|+|||++|.++... |..++
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 3478999999999999999999775 55443
No 481
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=82.24 E-value=0.75 Score=50.34 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHH
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
+..-+.|.||.|+|||||++.|+..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3345899999999999999999985
No 482
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=82.06 E-value=8.2 Score=42.61 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=38.0
Q ss_pred HHHHHHHHhhccCCCCEEEEEcChhhhhcCC-hhhHHHHHHHHhcC-CCCEEEEEecc
Q 001031 690 INELFEVALNESKSSPLIVFVKDIEKSLTGN-NDAYGALKSKLENL-PSNVVVIGSHT 745 (1183)
Q Consensus 690 ~~~l~evl~s~~~~~P~Ilf~~Die~~l~~~-~~~~~~i~~~L~~L-~g~vivIgs~~ 745 (1183)
++.+++.+.. ...|.||+|||++.+.... .+....+...++.+ ..++.+|++++
T Consensus 116 ~~~l~~~l~~--~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 116 YRRLVKAVRD--YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITN 171 (386)
T ss_dssp HHHHHHHHHT--CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEES
T ss_pred HHHHHHHHhc--cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEEC
Confidence 5566666654 2359999999999977653 66666677777665 45899999988
No 483
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=81.99 E-value=0.67 Score=50.51 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
+..-+.|.||.|+|||||++.|+..+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 33568999999999999999998754
No 484
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=81.94 E-value=0.99 Score=44.33 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 001031 984 CKGILLFGPPGTGKTMLAKAVAT 1006 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~ 1006 (1183)
...|+|.|++|+|||+|+.++..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999999975
No 485
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=81.94 E-value=0.68 Score=55.59 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=24.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHhCC
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEAGA 1010 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eLg~ 1010 (1183)
..|+|.|.+|+|||++++++|+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 56999999999999999999999975
No 486
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=81.90 E-value=0.59 Score=49.67 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
.-+.|.||.|+|||||++.|+..+
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458899999999999999998765
No 487
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=81.89 E-value=0.82 Score=44.27 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
..|++.|++|+|||+|+.++....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999997543
No 488
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=81.88 E-value=0.53 Score=48.28 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=21.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001031 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
.+.|.|++|+|||+|++.|+..+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999887
No 489
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=81.88 E-value=0.72 Score=49.91 Aligned_cols=23 Identities=39% Similarity=0.638 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
.-+.|.||.|+|||||++.|+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999975
No 490
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=81.77 E-value=0.75 Score=50.44 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHHh
Q 001031 986 GILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 986 gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
.+.|.||+|+|||||.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998765
No 491
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=81.67 E-value=2.5 Score=46.09 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
..|+|.|.+|+|||+|..++...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999754
No 492
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=81.64 E-value=0.64 Score=49.64 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
..-+.|.||.|+|||||.+.|+..+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999998765
No 493
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=81.59 E-value=0.64 Score=50.51 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=21.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
.-+.|.||.|+|||||.+.|+..+
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999998654
No 494
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=81.55 E-value=0.81 Score=44.93 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
...|+|.|++|+|||+|+..+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999998764
No 495
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=81.50 E-value=2.9 Score=47.51 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=16.0
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 001031 985 KGILLFGPPGTGKTMLAKAV 1004 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAI 1004 (1183)
+.+++.+|+|+|||..+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 47999999999999844433
No 496
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=81.49 E-value=0.71 Score=50.65 Aligned_cols=26 Identities=35% Similarity=0.509 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHHh
Q 001031 983 PCKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 983 P~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
+..-+.|.||.|+|||||++.|+..+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33458999999999999999998755
No 497
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=81.31 E-value=7.2 Score=44.00 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=21.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHH
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATE 1007 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~e 1007 (1183)
...++|.|++|+|||+|..+++..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999754
No 498
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=81.30 E-value=0.87 Score=44.16 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
..|++.|++|+|||+|+.++....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998653
No 499
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=81.23 E-value=0.74 Score=50.44 Aligned_cols=24 Identities=21% Similarity=0.562 Sum_probs=21.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHHh
Q 001031 985 KGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 985 ~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
.-+.|.||.|+|||||++.|+..+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 458899999999999999998765
No 500
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=81.20 E-value=0.67 Score=50.12 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHHh
Q 001031 984 CKGILLFGPPGTGKTMLAKAVATEA 1008 (1183)
Q Consensus 984 ~~gVLL~GPPGTGKT~LAkAIA~eL 1008 (1183)
..-+.|.||.|+|||||++.|+..+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458999999999999999998764
Done!