BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001032
         (1183 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3VYW|A Chain A, Crystal Structure Of Mnmc2 From Aquifex Aeolicus
 pdb|3VYW|B Chain B, Crystal Structure Of Mnmc2 From Aquifex Aeolicus
 pdb|3VYW|C Chain C, Crystal Structure Of Mnmc2 From Aquifex Aeolicus
 pdb|3VYW|D Chain D, Crystal Structure Of Mnmc2 From Aquifex Aeolicus
          Length = 308

 Score = 30.0 bits (66), Expect = 8.1,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 22/36 (61%)

Query: 307 VWLLNLYSALRQKFSSEGYWLDCPIAVSARKLIVQL 342
           +W L+  S ++++   +GYW+    ++S RK ++ L
Sbjct: 203 LWTLDFLSLIKERIDEKGYWVSYSSSLSVRKSLLTL 238


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.133    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,289,587
Number of Sequences: 62578
Number of extensions: 1106542
Number of successful extensions: 2339
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2338
Number of HSP's gapped (non-prelim): 1
length of query: 1183
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1073
effective length of database: 8,089,757
effective search space: 8680309261
effective search space used: 8680309261
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)