BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001036
(1180 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 202 bits (513), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 195/683 (28%), Positives = 304/683 (44%), Gaps = 82/683 (12%)
Query: 466 AHLQELYIDNNDLRGSLPW--CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 523
A L L + N L G + L + + L+ L+VS N L S + L S+E L LS
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 156
Query: 524 NNHFRIPVSLEPLFNHS--KLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 581
N + + + +LK N+I+G+++ S + +F L +SSN +
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF----LDVSSN--NFS 210
Query: 582 TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKR 641
T FL L+ ++S K+ G+F + + T+L+ L + ++ GP +P K
Sbjct: 211 TGIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKS 267
Query: 642 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFG--------------- 686
L++L ++ N F G IP + +L ++S N G++P FG
Sbjct: 268 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 327
Query: 687 ----------NVIFLQFLDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFS 736
+ L+ LDLS N+ +GE+P+ L G I +
Sbjct: 328 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 387
Query: 737 --LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 794
L+ L L+ N F G+IP +LS CS L L+L+ N LSG IP LG+L L+ + +
Sbjct: 388 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 447
Query: 795 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF 854
N LEG IP E + +L+ L + N+++G +PS
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS----------------------- 484
Query: 855 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXX 914
NC++L + LS N L G IP WI L L+ L L++N+ G +P
Sbjct: 485 -NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 543
Query: 915 XXXXHGLIPSCFDNTTLHESYN----------NNSSPDKPFKTSFSISGPQGSVEKKILE 964
+G IP+ + + N N K + ++ QG +++
Sbjct: 544 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 603
Query: 965 IFEFTTKNI-AYAYQGRVLSL------LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN 1017
+ NI + Y G + LD+S N L G+IP +IG++ + LNL HN
Sbjct: 604 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 663
Query: 1018 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 1077
+++G+IP +LR + LDLS NKL G+IP+ + L L ++ NNLSG IPE Q
Sbjct: 664 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQ 722
Query: 1078 FATFNKSSYDGNPFLCGLPLPIC 1100
F TF + + NP LCG PLP C
Sbjct: 723 FETFPPAKFLNNPGLCGYPLPRC 745
Score = 145 bits (367), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 177/658 (26%), Positives = 270/658 (41%), Gaps = 141/658 (21%)
Query: 304 GYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESN--NFTATLTTTQELHNFT 361
G++ L SLDLS + L S+GS L L++ SN +F ++ +L++
Sbjct: 92 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 151
Query: 362 NLEYLTLDDSSLHISLLQSIGSIFP----SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLD 417
LD S+ IS +G + LK+L++SG +++G + +LE LD
Sbjct: 152 -----VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLD 203
Query: 418 MRFARIALNTSFLQIIGESMPXXXXXXXXXXXXXXXXXRILDQGLCPLAHLQELYIDNND 477
+ + FL G C + LQ L I N
Sbjct: 204 VSSNNFSTGIPFL------------------------------GDC--SALQHLDISGNK 231
Query: 478 LRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF--RIPVSLEP 535
L G ++ T L++L++S NQ G I P + L S++ L L+ N F IP L
Sbjct: 232 LSGDFSRAISTCTELKLLNISSNQFVGPI---PPLPLKSLQYLSLAENKFTGEIPDFLSG 288
Query: 536 LFNHSKLKIFDAKNNEINGEINESHSLTPKF------QLKSLSLSSNYGDSVTFPKFLYH 589
+ L D N G + P F S+N+ + L
Sbjct: 289 ACD--TLTGLDLSGNHFYGAV-------PPFFGSCSLLESLALSSNNFSGELPMDTLL-K 338
Query: 590 QHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPF--RLPIHSHKRLRFLDV 647
LK +LS + GE P L + L L L +++ +GP L + L+ L +
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 398
Query: 648 SNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPD 707
NN F G IP + + LV ++S N L G+IPSS G++ L+ L L N L GEIP
Sbjct: 399 QNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 708 HLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGL 767
L ++ L L+L+ N GEIP LS C++L +
Sbjct: 458 ELMY-------------------------VKTLETLILDFNDLTGEIPSGLSNCTNLNWI 492
Query: 768 YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLP 827
L+NN L+G+IP+W+G L+ L + + N G IP E SL LD++ N +G++P
Sbjct: 493 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 552
Query: 828 SCFYPLS---------------------IKQVHLSKNML--------------------- 845
+ + S K+ H + N+L
Sbjct: 553 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 612
Query: 846 ----HGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 899
+G TF N S++ LD+SYN L+G IP I + L LNL HN++ G +P
Sbjct: 613 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 128/453 (28%), Positives = 209/453 (46%), Gaps = 28/453 (6%)
Query: 666 SLVYFNISMNALDGSIPS--SFGNVIFLQFLDLSNNKL--TGEIPDHLAMCCVXXXXXXX 721
SL ++S N+L G + + S G+ L+FL++S+N L G++ L + +
Sbjct: 98 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 157
Query: 722 XXXXXKGHIFSRIFS--LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP 779
++ + S L+ L + GN G++ +S+C +L+ L +++NN S IP
Sbjct: 158 NSIS-GANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP 214
Query: 780 RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQV 838
+LG+ LQH+ + N L G L++L+IS N G +P PL S++ +
Sbjct: 215 -FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYL 271
Query: 839 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 898
L++N G++ + C +L LDLS N+ G++P + S L L L+ NN GE+
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 899 PIXXXXXXXXXXXXXXXXXX-HGLIPSCFDNT-----TLHESYNNNSSPDKPFKTSFSIS 952
P+ G +P N TL S NN S P P
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL----CQ 387
Query: 953 GPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTL 1012
P+ ++++ L+ FT K S L L LS N L G IP +G+L++++ L
Sbjct: 388 NPKNTLQELYLQNNGFTGKIPPTLSN---CSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 1013 NLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 1072
L N L G IP ++ +E+L L +N L+G+IP L + L ++ N L+G+IP
Sbjct: 445 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Query: 1073 EWTAQFATFNKSSYDGNPFLCGLPLPI--CRSL 1103
+W + N F +P + CRSL
Sbjct: 505 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 537
Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 166/657 (25%), Positives = 264/657 (40%), Gaps = 120/657 (18%)
Query: 206 FNNLEVLDMSGNEIDNLVVPQGXXXXXXXXXXXXXXXXGNLCNNSILSSVARXXXXXXXX 265
N+LEVLD+S N I V G GN + + V+R
Sbjct: 147 LNSLEVLDLSANSISGANV-VGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLD 203
Query: 266 XXXNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN 325
N I S L+ LDI+ N++ + SR +LK L++S N
Sbjct: 204 VSSNNFSTGIPF--LGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLNIS------SN 254
Query: 326 KLLQSMGSFP--SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGS 383
+ + + P SL L L N FT E+ +F + TL + L +S G+
Sbjct: 255 QFVGPIPPLPLKSLQYLSLAENKFTG------EIPDFLSGACDTL--TGLDLSGNHFYGA 306
Query: 384 IFP------SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESM 437
+ P L++L++S +G L + L+ LD+ F F + ES+
Sbjct: 307 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF------NEFSGELPESL 360
Query: 438 PXXXXXXXXXXXXXXXXXRILDQGLC--PLAHLQELYIDNNDLRGSLPWCLANTTSLRIL 495
+ LC P LQELY+ NN G +P L+N + L L
Sbjct: 361 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 420
Query: 496 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGE 555
+SFN L+G+I SS L S+ +LR LK++ N + GE
Sbjct: 421 HLSFNYLSGTIPSS----LGSLSKLR-------------------DLKLWL---NMLEGE 454
Query: 556 INESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENN 615
I P+ L + L+ L + GE P+ L N
Sbjct: 455 I---------------------------PQELMYVKTLETLILDFNDLTGEIPSG-LSNC 486
Query: 616 TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMN 675
T L ++ L N+ L G I + L L +SNN+F G+IP E+GD SL++ +++ N
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTN 545
Query: 676 ALDGSIPSSFGNVIFLQFLDLSNNKLTGE-----IPDHLAMCC-----------VXXXXX 719
+G+IP++ +F Q ++ N + G+ D + C +
Sbjct: 546 LFNGTIPAA----MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 601
Query: 720 XXXXXXXKGHIFSRIFSLR---------NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLN 770
+I SR++ ++ +L + N G IP+ + L L L
Sbjct: 602 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 661
Query: 771 NNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLP 827
+N++SG IP +G+L+GL + + N L+G IP L L +D+S+NN+SG +P
Sbjct: 662 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 195/683 (28%), Positives = 304/683 (44%), Gaps = 82/683 (12%)
Query: 466 AHLQELYIDNNDLRGSLPW--CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 523
A L L + N L G + L + + L+ L+VS N L S + L S+E L LS
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159
Query: 524 NNHFRIPVSLEPLFNHS--KLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 581
N + + + +LK N+I+G+++ S + +F L +SSN +
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF----LDVSSN--NFS 213
Query: 582 TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKR 641
T FL L+ ++S K+ G+F + + T+L+ L + ++ GP +P K
Sbjct: 214 TGIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPLPLKS 270
Query: 642 LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF----------- 690
L++L ++ N F G IP + +L ++S N G++P FG+
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 691 --------------LQFLDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFS 736
L+ LDLS N+ +GE+P+ L G I +
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 737 --LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 794
L+ L L+ N F G+IP +LS CS L L+L+ N LSG IP LG+L L+ + +
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 795 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF 854
N LEG IP E + +L+ L + N+++G +PS
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS----------------------- 487
Query: 855 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXX 914
NC++L + LS N L G IP WI L L+ L L++N+ G +P
Sbjct: 488 -NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546
Query: 915 XXXXHGLIPSCFDNTTLHESYN----------NNSSPDKPFKTSFSISGPQGSVEKKILE 964
+G IP+ + + N N K + ++ QG +++
Sbjct: 547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606
Query: 965 IFEFTTKNI-AYAYQGRVLSL------LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN 1017
+ NI + Y G + LD+S N L G+IP +IG++ + LNL HN
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666
Query: 1018 NLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 1077
+++G+IP +LR + LDLS NKL G+IP+ + L L ++ NNLSG IPE Q
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQ 725
Query: 1078 FATFNKSSYDGNPFLCGLPLPIC 1100
F TF + + NP LCG PLP C
Sbjct: 726 FETFPPAKFLNNPGLCGYPLPRC 748
Score = 146 bits (368), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 177/658 (26%), Positives = 270/658 (41%), Gaps = 141/658 (21%)
Query: 304 GYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESN--NFTATLTTTQELHNFT 361
G++ L SLDLS + L S+GS L L++ SN +F ++ +L++
Sbjct: 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154
Query: 362 NLEYLTLDDSSLHISLLQSIGSIFP----SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLD 417
LD S+ IS +G + LK+L++SG +++G + +LE LD
Sbjct: 155 -----VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLD 206
Query: 418 MRFARIALNTSFLQIIGESMPXXXXXXXXXXXXXXXXXRILDQGLCPLAHLQELYIDNND 477
+ + FL G C + LQ L I N
Sbjct: 207 VSSNNFSTGIPFL------------------------------GDC--SALQHLDISGNK 234
Query: 478 LRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHF--RIPVSLEP 535
L G ++ T L++L++S NQ G I P + L S++ L L+ N F IP L
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFVGPI---PPLPLKSLQYLSLAENKFTGEIPDFLSG 291
Query: 536 LFNHSKLKIFDAKNNEINGEINESHSLTPKF------QLKSLSLSSNYGDSVTFPKFLYH 589
+ L D N G + P F S+N+ + L
Sbjct: 292 ACD--TLTGLDLSGNHFYGAV-------PPFFGSCSLLESLALSSNNFSGELPMDTLL-K 341
Query: 590 QHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPF--RLPIHSHKRLRFLDV 647
LK +LS + GE P L + L L L +++ +GP L + L+ L +
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401
Query: 648 SNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPD 707
NN F G IP + + LV ++S N L G+IPSS G++ L+ L L N L GEIP
Sbjct: 402 QNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 708 HLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGL 767
L ++ L L+L+ N GEIP LS C++L +
Sbjct: 461 ELMY-------------------------VKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495
Query: 768 YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLP 827
L+NN L+G+IP+W+G L+ L + + N G IP E SL LD++ N +G++P
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Query: 828 SCFYPLS---------------------IKQVHLSKNML--------------------- 845
+ + S K+ H + N+L
Sbjct: 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615
Query: 846 ----HGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 899
+G TF N S++ LD+SYN L+G IP I + L LNL HN++ G +P
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 128/453 (28%), Positives = 209/453 (46%), Gaps = 28/453 (6%)
Query: 666 SLVYFNISMNALDGSIPS--SFGNVIFLQFLDLSNNKL--TGEIPDHLAMCCVXXXXXXX 721
SL ++S N+L G + + S G+ L+FL++S+N L G++ L + +
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160
Query: 722 XXXXXKGHIFSRIFS--LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP 779
++ + S L+ L + GN G++ +S+C +L+ L +++NN S IP
Sbjct: 161 NSIS-GANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP 217
Query: 780 RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQV 838
+LG+ LQH+ + N L G L++L+IS N G +P PL S++ +
Sbjct: 218 -FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYL 274
Query: 839 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV 898
L++N G++ + C +L LDLS N+ G++P + S L L L+ NN GE+
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 899 PIXXXXXXXXXXXXXXXXXX-HGLIPSCFDNT-----TLHESYNNNSSPDKPFKTSFSIS 952
P+ G +P N TL S NN S P P
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL----CQ 390
Query: 953 GPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTL 1012
P+ ++++ L+ FT K S L L LS N L G IP +G+L++++ L
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSN---CSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 1013 NLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 1072
L N L G IP ++ +E+L L +N L+G+IP L + L ++ N L+G+IP
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Query: 1073 EWTAQFATFNKSSYDGNPFLCGLPLPI--CRSL 1103
+W + N F +P + CRSL
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540
Score = 97.4 bits (241), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 166/657 (25%), Positives = 264/657 (40%), Gaps = 120/657 (18%)
Query: 206 FNNLEVLDMSGNEIDNLVVPQGXXXXXXXXXXXXXXXXGNLCNNSILSSVARXXXXXXXX 265
N+LEVLD+S N I V G GN + + V+R
Sbjct: 150 LNSLEVLDLSANSISGANV-VGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLD 206
Query: 266 XXXNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGN 325
N I S L+ LDI+ N++ + SR +LK L++S N
Sbjct: 207 VSSNNFSTGIPF--LGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLNIS------SN 257
Query: 326 KLLQSMGSFP--SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGS 383
+ + + P SL L L N FT E+ +F + TL + L +S G+
Sbjct: 258 QFVGPIPPLPLKSLQYLSLAENKFTG------EIPDFLSGACDTL--TGLDLSGNHFYGA 309
Query: 384 IFP------SLKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESM 437
+ P L++L++S +G L + L+ LD+ F F + ES+
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF------NEFSGELPESL 363
Query: 438 PXXXXXXXXXXXXXXXXXRILDQGLC--PLAHLQELYIDNNDLRGSLPWCLANTTSLRIL 495
+ LC P LQELY+ NN G +P L+N + L L
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423
Query: 496 DVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGE 555
+SFN L+G+I SS L S+ +LR LK++ N + GE
Sbjct: 424 HLSFNYLSGTIPSS----LGSLSKLR-------------------DLKLWL---NMLEGE 457
Query: 556 INESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENN 615
I P+ L + L+ L + GE P+ L N
Sbjct: 458 I---------------------------PQELMYVKTLETLILDFNDLTGEIPSG-LSNC 489
Query: 616 TKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMN 675
T L ++ L N+ L G I + L L +SNN+F G+IP E+GD SL++ +++ N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTN 548
Query: 676 ALDGSIPSSFGNVIFLQFLDLSNNKLTGE-----IPDHLAMCC-----------VXXXXX 719
+G+IP++ +F Q ++ N + G+ D + C +
Sbjct: 549 LFNGTIPAA----MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604
Query: 720 XXXXXXXKGHIFSRIFSLR---------NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLN 770
+I SR++ ++ +L + N G IP+ + L L L
Sbjct: 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664
Query: 771 NNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLP 827
+N++SG IP +G+L+GL + + N L+G IP L L +D+S+NN+SG +P
Sbjct: 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 101/243 (41%), Gaps = 49/243 (20%)
Query: 681 IPSSFGNVIFLQFLDLSN-NKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRN 739
IPSS N+ +L FL + N L G IP +A L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-------------------------KLTQ 102
Query: 740 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 799
L +L + + G IP LS+ +L L + N LSG +P + +L L I N +
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 800 GPIPVEFCRLDSL-QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQ---------- 848
G IP + L + IS N ++G +P F L++ V LS+NML G
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 849 ------LKEGTFFN------CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 896
K F+ +L LDL N + G++P + L L LN++ NNL G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 897 EVP 899
E+P
Sbjct: 283 EIP 285
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 90/353 (25%), Positives = 137/353 (38%), Gaps = 113/353 (32%)
Query: 769 LNNNNLSG-------KIPRWLGNLKGLQHIVMPK-NHLEGPIPVEFCRLDSLQILDISDN 820
+NN +LSG IP L NL L + + N+L GPIP +L L L I+
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 821 NISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG 880
N+SG++P Q+K +LVTLD SYN L+G++P I
Sbjct: 112 NVSGAIPDFL----------------SQIK--------TLVTLDFSYNALSGTLPPSISS 147
Query: 881 LSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDNTTLHESYNNNSS 940
L L + N + G +P +SY + S
Sbjct: 148 LPNLVGITFDGNRISGAIP---------------------------------DSYGSFSK 174
Query: 941 PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVL-----SLLAGLDLSCNKL 995
TS +IS + + KI F N+A+ R + S+L G D + K+
Sbjct: 175 ----LFTSMTIS--RNRLTGKIPP--TFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 996 VGHIPP--------QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 1047
H+ ++G + L+L +N + GT+P + L+ + SL++S+N L G+I
Sbjct: 227 --HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Query: 1048 PRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPIC 1100
P+ F+ S+Y N LCG PLP C
Sbjct: 285 PQG-------------------------GNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 88/209 (42%), Gaps = 15/209 (7%)
Query: 583 FPKFLYHQHELKEAELSHIKMIGEFPNWLLENNT--KLEFLYLVNDSLAGPFRLPIHSHK 640
P + +L ++H + G P++L + T L+F Y ++L+G I S
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY---NALSGTLPPSISSLP 149
Query: 641 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 700
L + N G IP G IS N L G IP +F N + L F+DLS N
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFVDLSRNM 208
Query: 701 LTGEIPDHLAMCCVXXXXXXXXXXXXKGHI---FSRIFSLRNLRWLLLEGNHFVGEIPQS 757
L G+ A K + ++ +NL L L N G +PQ
Sbjct: 209 LEGD-----ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263
Query: 758 LSKCSSLKGLYLNNNNLSGKIPRWLGNLK 786
L++ L L ++ NNL G+IP+ GNL+
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQ 291
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 107/240 (44%), Gaps = 16/240 (6%)
Query: 465 LAHLQELYIDN-NDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 523
L +L LYI N+L G +P +A T L L ++ ++G+I L + ++ L S
Sbjct: 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFS 133
Query: 524 NNHFR--IPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSV 581
N +P S+ L N + FD N I+G I +S+ K S+++S N
Sbjct: 134 YNALSGTLPPSISSLPNLVGIT-FDG--NRISGAIPDSYGSFSKL-FTSMTISRNRLTGK 189
Query: 582 TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRL-PIHSHK 640
P F L +LS + G+ + L ++ + ++L +SLA F L + K
Sbjct: 190 IPPTF--ANLNLAFVDLSRNMLEGD-ASVLFGSDKNTQKIHLAKNSLA--FDLGKVGLSK 244
Query: 641 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 700
L LD+ NN G +P + L L N+S N L G IP GN+ +NNK
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 15/173 (8%)
Query: 733 RIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 792
IFS N++ + G V + S K S L +NN L+ + G+L L+ ++
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPS--KISPFLHLDFSNNLLTDTVFENCGHLTELETLI 354
Query: 793 MPKNHLE--GPIPVEFCRLDSLQILDISDNNISGSLPS--CFYPLSIKQVHLSKNMLHGQ 848
+ N L+ I ++ SLQ LDIS N++S C + S+ +++S N+L
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL--- 411
Query: 849 LKEGTFFNC--SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 899
T F C + LDL N + SIP + L L LN+A N L+ VP
Sbjct: 412 --TDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VP 460
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 7/52 (13%)
Query: 73 YLNASLFTPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFN 124
YL+ S+F Q+LE LDLS N + + + + NLK LDLS NAF+
Sbjct: 59 YLDISVFKFNQELEYLDLSHNKLVKISCHPTV-------NLKHLDLSFNAFD 103
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 988 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 1047
LDL NK + IP Q+ L +Q LN++ N L F L ++ + L N
Sbjct: 426 LDLHSNK-IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484
Query: 1048 PR 1049
PR
Sbjct: 485 PR 486
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 11/83 (13%)
Query: 630 GPFRLPIHSHKRLRFLDVSNNNFQGHIP---------VEIG-DILPSLVYFNISMNALDG 679
R+ I SH R+++LD+S F + V+I +L + ++S NA D
Sbjct: 45 SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDA 104
Query: 680 -SIPSSFGNVIFLQFLDLSNNKL 701
I FGN+ L+FL LS L
Sbjct: 105 LPICKEFGNMSQLKFLGLSTTHL 127
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 269 NILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRD-GNKL 327
N L G IDA F L+ LE+LD++DN V +RGL L +L L G+++ G L
Sbjct: 65 NALAG-IDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGL 123
Query: 328 LQSMGSFPSLNTLHLESNNFTATLTTT-QELHNFTNL 363
+ + +L L+L+ NN A T ++L N T+L
Sbjct: 124 FRGLA---ALQYLYLQDNNLQALPDNTFRDLGNLTHL 157
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 789 QHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSI-KQVHLSKNMLHG 847
Q I + N + F +L IL + N ++G + F L++ +Q+ LS N
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 848 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 896
+ TF L TL L L P GL+ L +L L NNL+
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA 142
Score = 30.8 bits (68), Expect = 4.9, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 4/140 (2%)
Query: 762 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN- 820
+S + ++L+ N +S + + L + + N L G F L L+ LD+SDN
Sbjct: 31 ASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNA 90
Query: 821 NISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWID 879
+ P+ F L + +HL + L +L G F ++L L L N L +
Sbjct: 91 QLRVVDPTTFRGLGHLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNNLQALPDNTFR 149
Query: 880 GLSQLSHLNLAHNNLEGEVP 899
L L+HL L H N VP
Sbjct: 150 DLGNLTHLFL-HGNRIPSVP 168
Score = 30.8 bits (68), Expect = 5.1, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 60/154 (38%), Gaps = 3/154 (1%)
Query: 743 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKN-HLEGP 801
+ L GN S C +L L+L++N L+G L L+ + + N L
Sbjct: 36 IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVV 95
Query: 802 IPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQ-VHLSKNMLHGQLKEGTFFNCSSL 860
P F L L L + + P F L+ Q ++L N L L + TF + +L
Sbjct: 96 DPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA-LPDNTFRDLGNL 154
Query: 861 VTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNL 894
L L N + GL L L L N++
Sbjct: 155 THLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHV 188
Score = 29.6 bits (65), Expect = 9.2, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
Query: 737 LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKN 796
L L++L L+ N+ + +L L+L+ N + L L +++ +N
Sbjct: 127 LAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQN 186
Query: 797 HLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKN 843
H+ P F L L L + NN+S PL S++ + L+ N
Sbjct: 187 HVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 16/170 (9%)
Query: 734 IFSLRNLRWLLLEGNHFVGEI-PQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 792
+F+ N++ L + F+ + P S SS L N + + + LK LQ ++
Sbjct: 327 VFAEMNIKMLSISDTPFIHMVCPPS---PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383
Query: 793 MPKNHLEGPIPVEFCR--LDSLQILDISDNNISGSL--PSCFYPLSIKQVHLSKNMLHGQ 848
+ +N L+ V + SL+ LD+S N+++ +C + SI ++LS NML
Sbjct: 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML--- 440
Query: 849 LKEGTFFNC--SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 896
G+ F C + LDL N + SIP + L L LN+A N L+
Sbjct: 441 --TGSVFRCLPPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKS 487
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 53/126 (42%), Gaps = 12/126 (9%)
Query: 460 QGLCPLAHLQELYIDNNDLRGSLPWCL--ANTTSLRILDVSFNQLTGSISSSPLVHLTSI 517
QG L LQ L + N L+ L N +SL LDVS N L SI
Sbjct: 371 QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430
Query: 518 EELRLSNNHFRIPV--SLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSS 575
L LS+N V L P K+K+ D NN I ++ +T L+ L+++S
Sbjct: 431 LVLNLSSNMLTGSVFRCLPP-----KVKVLDLHNNRI---MSIPKDVTHLQALQELNVAS 482
Query: 576 NYGDSV 581
N SV
Sbjct: 483 NQLKSV 488
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 51/123 (41%), Gaps = 6/123 (4%)
Query: 976 AYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTR-IQTLNLSHNNLTGTIPLTFSNL-RHI 1033
A + +S L LD+S N L H + I LNLS N LTG++ F L +
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKV 452
Query: 1034 ESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLC 1093
+ LDL N++ IP+ + L L VA N L + + NP+ C
Sbjct: 453 KVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 511
Query: 1094 GLP 1096
P
Sbjct: 512 TCP 514
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 745 LEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPV 804
L N G + + L +K L L+NN + IP+ + +L+ LQ + + N L+
Sbjct: 435 LSSNMLTGSVFRCLPP--KVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDG 491
Query: 805 EFCRLDSLQILDISDNNISGSLPSCFY 831
F RL SLQ + + DN + P Y
Sbjct: 492 VFDRLTSLQYIWLHDNPWDCTCPGIRY 518
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 8/118 (6%)
Query: 782 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLS 841
L L L ++++ N L+ F +L +L+ L + +N + SLP + +L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYL- 138
Query: 842 KNMLHGQLK---EGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLE 895
N+ H QL+ +G F ++L LDLSYN L S+P+ + D L+QL L L N L+
Sbjct: 139 -NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK 194
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Query: 1006 LTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 1065
LT + LNL+HN L F L ++ LDLSYN+L +P + D T + Y
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQ 190
Query: 1066 NLSGKIPEWTAQFATFNKSSY---DGNPFLCGLP 1096
N +P+ F Y NP+ C P
Sbjct: 191 NQLKSVPD--GVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 524
L +L EL +D N L+ P + T L L + +N+L S+ LTS++ELRL N
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYN 166
Query: 525 NHF-RIPVSLEPLFNH-SKLKIFDAKNNEI 552
N R+P E F+ ++LK NN++
Sbjct: 167 NQLKRVP---EGAFDKLTELKTLKLDNNQL 193
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 5/161 (3%)
Query: 741 RWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG 800
+ L L+ N ++ + + L+ LYLN+N L LK L+ + + N L+
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 801 -PIPVEFCRLDSLQILDISDNNISGSLPSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCS 858
PI V F +L +L L + N + P F L+ + + L N L L +G F +
Sbjct: 100 LPIGV-FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLT 157
Query: 859 SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 899
SL L L N L D L++L L L +N L+ VP
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVP 197
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 1006 LTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 1065
L + L L N L P F +L + L L YN+L +P+ + D T + YN
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYN 166
Query: 1066 NLSGKIPE 1073
N ++PE
Sbjct: 167 NQLKRVPE 174
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 69/167 (41%), Gaps = 26/167 (15%)
Query: 727 KGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLK 786
K H S + L NL +L+L GN K ++LK L L N L L
Sbjct: 74 KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT 133
Query: 787 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLH 846
L ++ + N L+ F +L +L LD+ DNN SLP
Sbjct: 134 NLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL-DNNQLQSLP------------------- 173
Query: 847 GQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHN 892
EG F + L L L+ N L S+PD + D L+ L+H+ L +N
Sbjct: 174 ----EGVFDKLTQLKQLSLNDNQLK-SVPDGVFDRLTSLTHIWLLNN 215
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 6/118 (5%)
Query: 782 LGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYP--LSIKQVH 839
L L L ++++ N L+ F +L +L+ L + +N + SLP + ++ ++
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLY 139
Query: 840 LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEG 896
L N L L +G F ++L LDL N L S+P+ + D L+QL L+L N L+
Sbjct: 140 LYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQLKS 195
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 10/163 (6%)
Query: 740 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNN----NLSGKIPRWLGNLKGLQHIVMPK 795
L+ L+L NHF S + SL LY+ N +L LGNL+ L +
Sbjct: 300 LKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLD---LSH 356
Query: 796 NHLEGP--IPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEG 852
N +E ++ L LQ L++S N G F ++ + L+ LH +
Sbjct: 357 NDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQS 416
Query: 853 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE 895
F N L L+L+Y +L+ S + GL L HLNL N+ +
Sbjct: 417 PFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQ 459
Score = 37.7 bits (86), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Query: 985 LAGLDLSCNKLVGH--IPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK 1042
L LDLS N + Q+ NL+ +QTLNLSHN G F +E LDL++ +
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 1043 LSGKIPRQ-LVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCG 1094
L P+ +L+ L + + Y L A + GN F G
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDG 461
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 793 MPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSC--FYPLSIKQVHLSKNMLHGQLK 850
+ N L P F R L ILD N+IS P PL +K ++L N L Q+
Sbjct: 32 LTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPL-LKVLNLQHNEL-SQIS 89
Query: 851 EGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 896
+ TF C++L LDL N ++ + L L+L+HN L
Sbjct: 90 DQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 992 CNKL-VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ 1050
C+ L + HIP + + I LNL+HN L P F+ + LD +N +S P
Sbjct: 11 CSHLKLTHIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPEL 68
Query: 1051 LVDLNTLAIFIVAYNNLSGKIPEWTAQFAT 1080
L L + + +N LS +I + T F T
Sbjct: 69 CQILPLLKVLNLQHNELS-QISDQTFVFCT 97
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 762 SSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFC---RLDSLQILDIS 818
SSL+ L L++N L P + L +++ L + + C S+Q L ++
Sbjct: 171 SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLA 230
Query: 819 DNNISGSLPSCFYPL---SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP 875
+N + + S F L ++ Q+ LS N LH + G+F SL L L YN + P
Sbjct: 231 NNQLLATSESTFSGLKWTNLTQLDLSYNNLH-DVGNGSFSYLPSLRYLSLEYNNIQRLSP 289
Query: 876 DWIDGLSQLSHLNLAH 891
GLS L +L+L
Sbjct: 290 RSFYGLSNLRYLSLKR 305
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 36/90 (40%)
Query: 1004 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063
G L + L L N LTG P F HI+ L L NK+ + + L+ L +
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 1064 YNNLSGKIPEWTAQFATFNKSSYDGNPFLC 1093
N +S +P + + NPF C
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPFNC 140
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 999 IPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLA 1058
+P ++ N + ++LS+N ++ +FSN+ + +L LSYN+L PR L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 1059 IFIVAYNNLSGKIPEWT-AQFATFNKSSYDGNPFLC 1093
+ + N++S +PE + + + NP C
Sbjct: 106 LLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYC 140
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 738 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 797
R++ L L+GN F +P+ LS L + L+NN +S + N+ L +++ N
Sbjct: 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 798 LEGPIPVEFCRLDSLQILDISDNNIS 823
L P F L SL++L + N+IS
Sbjct: 90 LRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 988 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 1047
+DLS N++ N+T++ TL LS+N L P TF L+ + L L N +S
Sbjct: 59 IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
Query: 1048 PRQLVDLNTLAIFIVAYNNL 1067
DL+ L+ + N L
Sbjct: 119 EGAFNDLSALSHLAIGANPL 138
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 24/93 (25%)
Query: 802 IPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLV 861
+P E L ++D+S+N IS L +F N + L+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRIS------------------------TLSNQSFSNMTQLL 81
Query: 862 TLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNL 894
TL LSYN L P DGL L L+L N++
Sbjct: 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 810 DSLQILDISDNNIS----GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDL 865
++++ LD+S+N I+ L C ++++ + L+ N ++ ++E +F + SL LDL
Sbjct: 26 EAVKSLDLSNNRITYISNSDLQRC---VNLQALVLTSNGINT-IEEDSFSSLGSLEHLDL 81
Query: 866 SYNYLNGSIPDWIDGLSQLSHLNLAHN 892
SYNYL+ W LS L+ LNL N
Sbjct: 82 SYNYLSNLSSSWFKPLSSLTFLNLLGN 108
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 985 LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044
+ LDLS N++ + +Q L L+ N + +FS+L +E LDLSYN LS
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 276 DAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFP 335
D +L+ + EL+++ N + NV GL+ +K+LDL+ I D + +
Sbjct: 77 DLAPLKNLTKITELELSGNPLKNVS---AIAGLQSIKTLDLTSTQITD----VTPLAGLS 129
Query: 336 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLH 374
+L L+L+ N +T L TNL+YL++ ++ +
Sbjct: 130 NLQVLYLDLNQ----ITNISPLAGLTNLQYLSIGNAQVS 164
Score = 33.5 bits (75), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 486 LANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF 545
LA ++L++L + NQ+T + SPL LT+++ L + N L PL N SKL
Sbjct: 125 LAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNAQVS---DLTPLANLSKLTTL 178
Query: 546 DAKNNEI 552
A +N+I
Sbjct: 179 KADDNKI 185
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.4 bits (85), Expect = 0.052, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 25/107 (23%)
Query: 813 QILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLN 871
QIL + DN I+ P F L ++K+++L N L G L G F + + L LDL N L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 872 -----------------------GSIPDWIDGLSQLSHLNLAHNNLE 895
+P I+ L+ L+HL L N L+
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148
Score = 34.3 bits (77), Expect = 0.47, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 985 LAGLDLSCNKLVGHIPPQI-GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 1043
L L L N+L G +P + +LT++ L+L N LT F L H++ L + NKL
Sbjct: 66 LKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 1044 SGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWT-AQFATFNKSSYDGNPFLC 1093
+ ++PR + L L + N L IP + ++ + GNP+ C
Sbjct: 125 T-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWDC 173
Score = 33.1 bits (74), Expect = 1.00, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 465 LAHLQELYIDNNDLRGSLPWCLANT-TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLS 523
L +L+ELY+ +N L G+LP + ++ T L +LD+ NQLT + S+ L ++EL +
Sbjct: 63 LINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMC 120
Query: 524 NNHF-RIPVSLEPLFNHSKLKIFDAKNNEI-NGEINESHSLTPKF 566
N +P +E L + + L + + I +G + SLT +
Sbjct: 121 CNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 810 DSLQILDISDNNIS----GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDL 865
++++ LD+S+N I+ L C ++++ + L+ N ++ ++E +F + SL LDL
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRC---VNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDL 107
Query: 866 SYNYLNGSIPDWIDGLSQLSHLNLAHN 892
SYNYL+ W LS L+ LNL N
Sbjct: 108 SYNYLSNLSSSWFKPLSSLTFLNLLGN 134
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 985 LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044
+ LDLS N++ + +Q L L+ N + +FS+L +E LDLSYN LS
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 37.0 bits (84), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 1006 LTRIQTLNLSHNNLTGT--IPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063
L +Q L+LSH+++ + L NLRH++ L+LSYN+ G + + L + VA
Sbjct: 348 LENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVA 407
Query: 1064 YNNLSGKIPEWTAQ 1077
+ +L K P Q
Sbjct: 408 FTHLHVKAPHSPFQ 421
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 4/168 (2%)
Query: 732 SRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKI-PRWLGNLKGLQH 790
S I + +L+ L+L N F + + SL+ LY+ N + R L L+ LQ
Sbjct: 294 SGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQK 353
Query: 791 IVMPKNHLEGP--IPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHG 847
+ + + +E ++ L LQ L++S N G F ++ + ++ LH
Sbjct: 354 LDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHV 413
Query: 848 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE 895
+ F N L L+LS+ L+ S + GL L HLNL N+ +
Sbjct: 414 KAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQ 461
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 1002 QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 1049
Q+ NL +Q LNLS+N G F +E LD+++ L K P
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPH 417
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 110/275 (40%), Gaps = 38/275 (13%)
Query: 276 DAKEFDSLSNLEELDINDNEIDNVE----VSRGYRGLRKLKSLDLSGVGIRDGNKLLQSM 331
D + +NL L+ N N+I +E +S+ ++ L+ SL+L + N LQS+
Sbjct: 171 DTNSLEQATNLS-LNFNGNDIKGIEPGAFISKIFQSLKFGGSLNLFIIFKGLQNSTLQSL 229
Query: 332 --GSFPSLNTLHLESNNFTATLTTTQE-----LHNFTNLEYLT---------LDDSSLHI 375
G+F + +L S F + E H F++L T LD ++ H+
Sbjct: 230 WLGTFEDTDDQYLTSATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHL 289
Query: 376 SLLQSIGSIFPSLKNLSMSG------CEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSF 429
+ L S SLK L ++ C++N FP + L ++ ++ L T
Sbjct: 290 NGLPSGIEGMNSLKKLVLNANSFDQLCQINAA----SFPSLRDL-YIKGNMRKLDLGTRC 344
Query: 430 LQIIGESMPXXXXXXXXXXXXXXXXXRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANT 489
L+ + E++ ++ + L HLQ L + N+ G
Sbjct: 345 LEKL-ENLQKLDLSHSDIEASDCCNLQLKN-----LRHLQYLNLSYNEPLGLEDQAFKEC 398
Query: 490 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 524
L +LDV+F L SP +L + L LS+
Sbjct: 399 PQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSH 433
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 37.0 bits (84), Expect = 0.070, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 269 NILQGSIDAKEFDSLSNLEELDINDN-EIDNVEVSRGYRGLRKLKSLDLSGVGIRD-GNK 326
N+L IDA F L+ LE+LD++DN ++ +V+ + + GL +L +L L G+++ G
Sbjct: 66 NVL-ARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT-FHGLGRLHTLHLDRCGLQELGPG 123
Query: 327 LLQSMGSFPSLNTLHLESNNFTATLTTT-QELHNFTNL 363
L + + +L L+L+ N A T ++L N T+L
Sbjct: 124 LFRGLA---ALQYLYLQDNALQALPDDTFRDLGNLTHL 158
Score = 33.9 bits (76), Expect = 0.51, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 1003 IGNLTRIQTLNLSHNNLTGTIP-LTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI 1061
+GNLT + H N ++P F L ++ L L N+++ P DL L
Sbjct: 152 LGNLTHL----FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207
Query: 1062 VAYNNLSGKIPEWTAQFATFNKSSYDGNPFLC 1093
+ NNLS E A + NP++C
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVC 239
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 806 FCRLDSLQILDISDNNISGSL-PSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTL 863
F L L+ LD+SDN S+ P+ F+ L + +HL + L +L G F ++L L
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYL 134
Query: 864 DLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 899
L N L D L L+HL L H N VP
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFL-HGNRISSVP 169
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 37.0 bits (84), Expect = 0.071, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 269 NILQGSIDAKEFDSLSNLEELDINDN-EIDNVEVSRGYRGLRKLKSLDLSGVGIRD-GNK 326
N+L IDA F L+ LE+LD++DN ++ +V+ + + GL +L +L L G+++ G
Sbjct: 65 NVL-ARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT-FHGLGRLHTLHLDRCGLQELGPG 122
Query: 327 LLQSMGSFPSLNTLHLESNNFTATLTTT-QELHNFTNL 363
L + + +L L+L+ N A T ++L N T+L
Sbjct: 123 LFRGLA---ALQYLYLQDNALQALPDDTFRDLGNLTHL 157
Score = 33.9 bits (76), Expect = 0.52, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 1003 IGNLTRIQTLNLSHNNLTGTIP-LTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI 1061
+GNLT + H N ++P F L ++ L L N+++ P DL L
Sbjct: 151 LGNLTHL----FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 206
Query: 1062 VAYNNLSGKIPEWTAQFATFNKSSYDGNPFLC 1093
+ NNLS E A + NP++C
Sbjct: 207 LFANNLSALPTEALAPLRALQYLRLNDNPWVC 238
Score = 32.0 bits (71), Expect = 2.4, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 806 FCRLDSLQILDISDNNISGSL-PSCFYPLS-IKQVHLSKNMLHGQLKEGTFFNCSSLVTL 863
F L L+ LD+SDN S+ P+ F+ L + +HL + L +L G F ++L L
Sbjct: 75 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYL 133
Query: 864 DLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 899
L N L D L L+HL L H N VP
Sbjct: 134 YLQDNALQALPDDTFRDLGNLTHLFL-HGNRISSVP 168
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 6/171 (3%)
Query: 728 GHIFSRIFSLRNLRWLLLEGN--HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 785
G+ FS + L +L +L L N F G QS +SLK L L+ N + +LG L
Sbjct: 338 GNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-L 395
Query: 786 KGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNISGSLPSCFYPLS-IKQVHLSKN 843
+ L+H+ ++L+ F L +L LDIS + + F LS ++ + ++ N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 844 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNL 894
F +L LDLS L P + LS L LN++HNN
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 1003 IGNLTRIQTLNLSHNNLTG-TIPLTFSNLRHIESLDLSYNKLSG 1045
IG+L ++ LN++HN + +P FSNL ++E LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 107/253 (42%), Gaps = 16/253 (6%)
Query: 600 HIKMI----GEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGH 655
H++++ G+FP L++ +L F + LP L FLD+S N
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP-----SLEFLDLSRNGLSFK 362
Query: 656 IPVEIGDI-LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCV 714
D SL Y ++S N + ++ S+F + L+ LD ++ L ++ + +
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSL 420
Query: 715 XXXXXXXXXXXXKGHIFSRIFS-LRNLRWLLLEGNHFVGE-IPQSLSKCSSLKGLYLNNN 772
F+ IF+ L +L L + GN F +P ++ +L L L+
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 773 NLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCF-- 830
L P +L LQ + M N+ + L+SLQ+LD S N+I S
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540
Query: 831 YPLSIKQVHLSKN 843
+P S+ ++L++N
Sbjct: 541 FPSSLAFLNLTQN 553
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%)
Query: 985 LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044
L LDLS +L P +L+ +Q LN+SHNN + L ++ LD S N +
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531
Query: 1045 GKIPRQL 1051
++L
Sbjct: 532 TSKKQEL 538
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 736 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 795
SL +L L+L GN + S SSL+ L NL+ +G+LK L+ + +
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 796 NHLEG-PIPVEFCRLDSLQILDISDNNISG 824
N ++ +P F L +L+ LD+S N I
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 36.6 bits (83), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 103/242 (42%), Gaps = 27/242 (11%)
Query: 666 SLVYFNISMNALDGSIPSSFGNVI------FLQFLDLSNNKLTGEIPDHLAMCCVXXXXX 719
+L +F+++ N+L + +G + L+ LD+S N T +I + +
Sbjct: 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA---ISKS 231
Query: 720 XXXXXXXKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP 779
HI F N++ + N F G L++ SS++ L L++ +
Sbjct: 232 QAFSLILAHHIMGAGFGFHNIK--DPDQNTFAG-----LAR-SSVRHLDLSHGFVFSLNS 283
Query: 780 RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQV 838
R LK L+ + + N + F LD+LQ+L++S N + S FY L + +
Sbjct: 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343
Query: 839 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG-----SIPDWI---DGLSQLSHLNLA 890
L KN + +++ TF L TLDL N L SIPD + L L +NL
Sbjct: 344 DLQKNHI-AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLT 402
Query: 891 HN 892
N
Sbjct: 403 AN 404
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 105/250 (42%), Gaps = 32/250 (12%)
Query: 274 SIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGS 333
S++++ F++L +L+ L++ N+I+ + + GL L+ L+LS + G +
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNKINKI-ADEAFYGLDNLQVLNLSYNLL--GELYSSNFYG 336
Query: 334 FPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLH-ISLLQSIGSIFPS---LK 389
P + + L+ N+ + Q L+ L L D++L I + SI IF S L
Sbjct: 337 LPKVAYIDLQKNHIA--IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLV 394
Query: 390 NLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQII-----------GESMP 438
L N + + LE+LD+ + L LQI+ G+ P
Sbjct: 395 TLPKINLTANLIHLSEN-----RLENLDILY--FLLRVPHLQILILNQNRFSSCSGDQTP 447
Query: 439 XXXXXXXXXXXXXXXXXRILDQGLC-----PLAHLQELYIDNNDLRGSLPWCLANTTSLR 493
+ LC L+HLQ LY+++N L P ++ T+LR
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR 507
Query: 494 ILDVSFNQLT 503
L ++ N+LT
Sbjct: 508 GLSLNSNRLT 517
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 28/120 (23%)
Query: 737 LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKN 796
L +L+ L L N+ P S ++L+GL LN+N L+ L H +P N
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-----------VLSHNDLPAN 527
Query: 797 HLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFN 856
L+ILDIS N + P F LS+ + +K + +L TF N
Sbjct: 528 ---------------LEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECEL--STFIN 570
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 87/222 (39%), Gaps = 50/222 (22%)
Query: 728 GHIFS---RIF-SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG 783
G +FS R+F +L++L+ L L N ++ +L+ L L+ N L
Sbjct: 276 GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335
Query: 784 NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG-----SLPSCFYP------ 832
L + +I + KNH+ F L+ LQ LD+ DN ++ S+P F
Sbjct: 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVT 395
Query: 833 -----LSIKQVHLSKNML-------------HGQ---LKEGTFFNCS---------SLVT 862
L+ +HLS+N L H Q L + F +CS SL
Sbjct: 396 LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455
Query: 863 LDLSYNYLNGSIP-----DWIDGLSQLSHLNLAHNNLEGEVP 899
L L N L + D +GLS L L L HN L P
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP 497
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 74/172 (43%), Gaps = 5/172 (2%)
Query: 727 KGHIFSRIFSLRNLRWLLLEGN--HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGN 784
KG I + +L +L +L L N F G S +SL+ L L+ N ++G
Sbjct: 334 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG- 392
Query: 785 LKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSK 842
L+ LQH+ + L+ F L+ L LDIS N F L S+ + ++
Sbjct: 393 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 452
Query: 843 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNL 894
N F N ++L LDLS L D L +L LN++HNNL
Sbjct: 453 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 504
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 781 WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL----SIK 836
W G L L ++++ N ++ P F L SL+ L + + SL S +P+ ++K
Sbjct: 71 WHG-LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL-ASLES--FPIGQLITLK 126
Query: 837 QVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 890
+++++ N +H F N ++LV +DLSYNY+ + + L + +NL+
Sbjct: 127 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 180
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 1003 IGNLTRIQTLNLSHNNL-TGTIPLTFSNLRHIESLDLSYN 1041
IG L ++ LN++HN + + +P FSNL ++ +DLSYN
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 12/119 (10%)
Query: 275 IDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSF 334
+ + F + S L+ LD++ EI+ +E + + GL L +L L+G I+ S GSF
Sbjct: 42 LKSYSFSNFSELQWLDLSRCEIETIE-DKAWHGLHHLSNLILTGNPIQSF-----SPGSF 95
Query: 335 PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQS--IGSIFPSLKNL 391
L +L N A T L +F + +TL ++ + + S + + F +L NL
Sbjct: 96 SGLTSLE----NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 150
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 985 LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 1043
L LDLS +L L R+Q LN+SHNNL ++ L + +LD S+N++
Sbjct: 470 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 528
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 74/172 (43%), Gaps = 5/172 (2%)
Query: 727 KGHIFSRIFSLRNLRWLLLEGN--HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGN 784
KG I + +L +L +L L N F G S +SL+ L L+ N ++G
Sbjct: 339 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG- 397
Query: 785 LKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSK 842
L+ LQH+ + L+ F L+ L LDIS N F L S+ + ++
Sbjct: 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457
Query: 843 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNL 894
N F N ++L LDLS L D L +L LN++HNNL
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 781 WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL----SIK 836
W G L L ++++ N ++ P F L SL+ L + + SL S +P+ ++K
Sbjct: 76 WHG-LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL-ASLES--FPIGQLITLK 131
Query: 837 QVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 890
+++++ N +H F N ++LV +DLSYNY+ + + L + +NL+
Sbjct: 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 1003 IGNLTRIQTLNLSHNNL-TGTIPLTFSNLRHIESLDLSYN 1041
IG L ++ LN++HN + + +P FSNL ++ +DLSYN
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 12/119 (10%)
Query: 275 IDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSF 334
+ + F + S L+ LD++ EI+ +E + + GL L +L L+G I+ S GSF
Sbjct: 47 LKSYSFSNFSELQWLDLSRCEIETIE-DKAWHGLHHLSNLILTGNPIQSF-----SPGSF 100
Query: 335 PSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQS--IGSIFPSLKNL 391
L +L N A T L +F + +TL ++ + + S + + F +L NL
Sbjct: 101 SGLTSLE----NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 985 LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 1043
L LDLS +L L R+Q LN+SHNNL ++ L + +LD S+N++
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 461 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 520
GL L L+ LY+ NN + L+ T L L + NQ+ + PL LT ++ L
Sbjct: 127 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIV---PLARLTKLQNL 181
Query: 521 RLSNNHFRIPVSLEPLFNHSKLKIF--DAKNNEINGEIN 557
LS NH +L L N L++F +A N IN + N
Sbjct: 182 YLSKNHISDLRALRGLKNLDVLELFSQEALNKPINHQSN 220
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 11/93 (11%)
Query: 276 DAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFP 335
D +L+ + EL+++ N + NV GL+ +K+LDL+ I D + +
Sbjct: 83 DLTPLKNLTKITELELSGNPLKNVS---AIAGLQSIKTLDLTSTQITD----VTPLAGLS 135
Query: 336 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTL 368
+L L+L+ N +T L TNL+YL++
Sbjct: 136 NLQVLYLDLNQ----ITNISPLAGLTNLQYLSI 164
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 486 LANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF 545
LA ++L++L + NQ+T + SPL LT+++ L + NN L PL N SKL
Sbjct: 131 LAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLSIGNNQVN---DLTPLANLSKLTTL 184
Query: 546 DAKNNEI 552
A +N+I
Sbjct: 185 RADDNKI 191
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 461 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 520
GL L L+ LY+ NN + L+ T L L + NQ++ + PL LT ++ L
Sbjct: 126 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 180
Query: 521 RLSNNHFRIPVSLEPLFNHSKLKIFDAK--NNEINGEIN 557
LS NH +L L N L++F + N IN + N
Sbjct: 181 YLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSN 219
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 76/171 (44%), Gaps = 6/171 (3%)
Query: 728 GHIFSRIFSLRNLRWLLLEGN--HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 785
G+ FS + L +L +L L N F G QS SLK L L+ N + +LG L
Sbjct: 362 GNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLG-L 419
Query: 786 KGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNISGSLPSCFYPLS-IKQVHLSKN 843
+ L+H+ ++L+ F L +L LDIS + + F LS ++ + ++ N
Sbjct: 420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 479
Query: 844 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNL 894
F +L LDLS L P + LS L LN++HNN
Sbjct: 480 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 1003 IGNLTRIQTLNLSHNNLTG-TIPLTFSNLRHIESLDLSYNKLSG 1045
IG+L ++ LN++HN + +P FSNL ++E LDLS NK+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 113/255 (44%), Gaps = 20/255 (7%)
Query: 600 HIKMI----GEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNN--NFQ 653
H++++ G+FP L++ +L F + LP L FLD+S N +F+
Sbjct: 332 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP-----SLEFLDLSRNGLSFK 386
Query: 654 GHIP-VEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMC 712
G + G I SL Y ++S N + ++ S+F + L+ LD ++ L ++ +
Sbjct: 387 GCCSQSDFGTI--SLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFL 442
Query: 713 CVXXXXXXXXXXXXKGHIFSRIFS-LRNLRWLLLEGNHFVGE-IPQSLSKCSSLKGLYLN 770
+ F+ IF+ L +L L + GN F +P ++ +L L L+
Sbjct: 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502
Query: 771 NNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCF 830
L P +L LQ + M N+ + L+SLQ+LD S N+I S
Sbjct: 503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562
Query: 831 --YPLSIKQVHLSKN 843
+P S+ ++L++N
Sbjct: 563 QHFPSSLAFLNLTQN 577
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%)
Query: 985 LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044
L LDLS +L P +L+ +Q LN+SHNN + L ++ LD S N +
Sbjct: 496 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 555
Query: 1045 GKIPRQL 1051
++L
Sbjct: 556 TSKKQEL 562
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 736 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 795
SL +L L+L GN + S SSL+ L NL+ +G+LK L+ + +
Sbjct: 98 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 157
Query: 796 NHLEG-PIPVEFCRLDSLQILDISDNNISG 824
N ++ +P F L +L+ LD+S N I
Sbjct: 158 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 73/329 (22%), Positives = 125/329 (37%), Gaps = 35/329 (10%)
Query: 785 LKGLQHIVMPKNHLEGPIPVE--FCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHL-- 840
L L+ + + + +L+G + F L SL++L + DNNI P+ F+ L++++ H+
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF-LNMRRFHVLD 160
Query: 841 ----------SKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLA 890
+++L+ Q K T SS+ D++ +L + ++ L+L+
Sbjct: 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS 220
Query: 891 HNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFS 950
N + + LI S N + N PD +F+
Sbjct: 221 GNGFKESMA-------KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD-----NFT 268
Query: 951 ISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLD---LSCNKLVGHIPPQIGNLT 1007
G + S K +K+ +A V S L+ L+ N++ LT
Sbjct: 269 FKGLEASGVKTC-----DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323
Query: 1008 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNL 1067
+ LNLS N L F NL +E LDLSYN + + + L L + N L
Sbjct: 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383
Query: 1068 SGKIPEWTAQFATFNKSSYDGNPFLCGLP 1096
+ + K NP+ C P
Sbjct: 384 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 461 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 520
GL L L+ LY+ NN + L+ T L L + NQ++ + PL LT ++ L
Sbjct: 129 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 183
Query: 521 RLSNNHFRIPVSLEPLFNHSKLKIFDAK--NNEINGEIN 557
LS NH +L L N L++F + N IN + N
Sbjct: 184 YLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSN 222
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3 Hybrid-Md-2-Eritoran
Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3 Hybrid-Md-2-Eritoran
Complex
Length = 276
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 1003 IGNLTRIQTLNLSHNNLTG-TIPLTFSNLRHIESLDLSYNKLSG 1045
IG+L ++ LN++HN + +P FSNL ++E LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 31/177 (17%)
Query: 736 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 795
SL +L L+L GN + S SSL+ L NL+ +G+LK L+ + +
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 796 NHLEG-PIPVEFCRLDSLQILDISDNNISGSL---------------------------- 826
N ++ +P F L +L+ LD+S N I
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193
Query: 827 PSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 883
P F + +K++ L N L + +G F +SL + L N + S P ID LS+
Sbjct: 194 PGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDYLSR 248
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1003 IGNLTRIQTLNLSHNNLTG-TIPLTFSNLRHIESLDLSYNKL 1043
IG+L ++ LN++HN + +P FSNL ++E LDLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 31/177 (17%)
Query: 736 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 795
SL +L L+L GN + S SSL+ L NL+ +G+LK L+ + +
Sbjct: 76 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 135
Query: 796 NHLEG-PIPVEFCRLDSLQILDISDNNISGSL---------------------------- 826
N ++ +P F L +L+ LD+S N I
Sbjct: 136 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 195
Query: 827 PSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 883
P F + +K++ L N L + +G F +SL + L N + S P ID LS+
Sbjct: 196 PGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDYLSR 250
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 88/191 (46%), Gaps = 37/191 (19%)
Query: 737 LRNLRWLLLEGNHFVGEIPQSLSKCS----SLKGLYLNNNNLSG--KIPRWLGNLKGLQH 790
L++L +L L N V E ++ S C SL+ L L+ N+L K L LK L
Sbjct: 333 LKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391
Query: 791 IVMPKNHLEGPIP---------------------VEFCRLDSLQILDISDNNISGSLPSC 829
+ + +N P+P V+ C +L++LD+S+NN+ S
Sbjct: 392 LDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF--SL 448
Query: 830 FYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLN 888
F P ++++++S+N L L + + F L+ + +S N L S+PD I D L+ L +
Sbjct: 449 FLP-RLQELYISRNKLK-TLPDASLFPV--LLVMKISRNQLK-SVPDGIFDRLTSLQKIW 503
Query: 889 LAHNNLEGEVP 899
L N + P
Sbjct: 504 LHTNPWDCSCP 514
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 811 SLQILDISDNNIS----GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 866
+++ LD+S N I+ G L +C + QV + K+ ++ F++ SL LDLS
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRAC----ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82
Query: 867 YNYLNGSIPDWIDGLSQLSHLNLAHN 892
N+L+ W LS L +LNL N
Sbjct: 83 DNHLSSLSSSWFGPLSSLKYLNLMGN 108
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1003 IGNLTRIQTLNLSHNNLTG-TIPLTFSNLRHIESLDLSYNKL 1043
IG+L ++ LN++HN + +P FSNL ++E LDLS NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 31/177 (17%)
Query: 736 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 795
SL +L L+L GN + S SSL+ L NL+ +G+LK L+ + +
Sbjct: 76 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAH 135
Query: 796 NHLEG-PIPVEFCRLDSLQILDISDNNISGSL---------------------------- 826
N ++ +P F L +L+ LD+S N I
Sbjct: 136 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 195
Query: 827 PSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 883
P F + +K++ L N L + +G F +SL + L N + S P ID LS+
Sbjct: 196 PGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDYLSR 250
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1003 IGNLTRIQTLNLSHNNLTG-TIPLTFSNLRHIESLDLSYNKL 1043
IG+L ++ LN++HN + +P FSNL ++E LDLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 31/177 (17%)
Query: 736 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 795
SL +L L+L GN + S SSL+ L NL+ +G+LK L+ + +
Sbjct: 75 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 796 NHLEG-PIPVEFCRLDSLQILDISDNNISGSL---------------------------- 826
N ++ +P F L +L+ LD+S N I
Sbjct: 135 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 194
Query: 827 PSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 883
P F + +K++ L N L + +G F +SL + L N + S P ID LS+
Sbjct: 195 PGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDYLSR 249
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1003 IGNLTRIQTLNLSHNNLTG-TIPLTFSNLRHIESLDLSYNKL 1043
IG+L ++ LN++HN + +P FSNL ++E LDLS NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 31/177 (17%)
Query: 736 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 795
SL +L L+L GN + S SSL+ L NL+ +G+LK L+ + +
Sbjct: 75 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 796 NHLEG-PIPVEFCRLDSLQILDISDNNISGSL---------------------------- 826
N ++ +P F L +L+ LD+S N I
Sbjct: 135 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 194
Query: 827 PSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 883
P F + +K++ L N L + +G F +SL + L N + S P ID LS+
Sbjct: 195 PGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDYLSR 249
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 15/150 (10%)
Query: 274 SIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGS 333
+++ EF S +LEEL++N+N + VE + L L++L G+R L +G
Sbjct: 46 TLNQDEFASFPHLEELELNENIVSAVEPG-AFNNLFNLRTL-----GLRSNRLKLIPLGV 99
Query: 334 FP---SLNTLHLESNNFTATLTTT-QELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLK 389
F +L L + N L Q+L+N +LE D+ ++IS S SL+
Sbjct: 100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE--VGDNDLVYIS--HRAFSGLNSLE 155
Query: 390 NLSMSGCEVNGVLSGQGFPHFKSLEHLDMR 419
L++ C + + + + H L L +R
Sbjct: 156 QLTLEKCNLTSIPT-EALSHLHGLIVLRLR 184
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 110/270 (40%), Gaps = 63/270 (23%)
Query: 280 FDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNT 339
F LSNL +LDI++N+I + + ++ L LKSL++ D + + S +F LN+
Sbjct: 100 FTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVG-----DNDLVYISHRAFSGLNS 153
Query: 340 LH---LESNNFTATLTTT-QELHNFTNLEYLTLDDSS--------------LHISLLQSI 381
L LE N T+ T LH L L+ ++ L IS +
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213
Query: 382 GSIFPS------LKNLSMSGCEVNGVLSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGE 435
++ P+ L +LS++ C + V P+ + +RF ++ N + I
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLTAV------PYLAVRHLVYLRFLNLSYNP--ISTIEG 265
Query: 436 SMPXXXXXXXXXXXXXXXXXRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRIL 495
SM L L LQE+ + L P+ LR+L
Sbjct: 266 SM------------------------LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVL 301
Query: 496 DVSFNQLTGSISSSPLVHLTSIEELRLSNN 525
+VS NQLT ++ S + ++E L L +N
Sbjct: 302 NVSGNQLT-TLEESVFHSVGNLETLILDSN 330
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 98/237 (41%), Gaps = 24/237 (10%)
Query: 643 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLT 702
R LD+ N + E P L ++ N + P +F N+ L+ L L +N+L
Sbjct: 35 RLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
Query: 703 GEIPDHLAMCCVXXXXXXXXXXXXK-----GHIFSRIFSLRNLRWLLLEGNHFVGEIPQS 757
IP L + K ++F +++L++L + N V ++
Sbjct: 94 -LIP--LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE---VGDNDLVYISHRA 147
Query: 758 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL--EGPIPVEFCRLDSLQIL 815
S +SL+ L L NL+ L +L GL IV+ HL F RL L++L
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGL--IVLRLRHLNINAIRDYSFKRLYRLKVL 205
Query: 816 DISD-NNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT---LDLSYN 868
+IS + P+C Y L++ + ++ H L + LV L+LSYN
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSIT----HCNLTAVPYLAVRHLVYLRFLNLSYN 258
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 1003 IGNLTRIQTLNLSHNNLTG-TIPLTFSNLRHIESLDLSYNKL 1043
IG+L ++ LN++HN + +P FSNL ++E LDLS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 7/176 (3%)
Query: 728 GHIFSRIFSLRNLRWLLLEGN--HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 785
G+ FS + L +L +L L N F G QS +SLK L L+ N + +LG L
Sbjct: 338 GNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-L 395
Query: 786 KGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNISGSLPSCFYPLS-IKQVHLSKN 843
+ L+H+ ++L+ F L +L LDIS + + F LS ++ + ++ N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 844 MLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP 899
F +L LDLS L P + LS L LN+A N L+ VP
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VP 510
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 736 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 795
SL +L L+L GN + S SSL+ L NL+ +G+LK L+ + +
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 796 NHLEG-PIPVEFCRLDSLQILDISDNNI 822
N ++ +P F L +L+ LD+S N I
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 461 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 520
GL L L+ LY+ NN + L+ T L L + NQ++ + PL LT ++ L
Sbjct: 129 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 183
Query: 521 RLSNNHFRIPVSLEPLFNHSKLKIFDAK--NNEINGEIN 557
LS NH +L L N L++F + N IN + N
Sbjct: 184 YLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSN 222
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 25/151 (16%)
Query: 756 QSLSKCSSLKGLYLNNNNLSGKIPRW------------LGNLKGLQHIVMPKNHLEGPIP 803
Q+ S L+ L+L NN + IP + LG LK L++I + EG +
Sbjct: 101 QAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELKRLEYI--SEAAFEGLVN 157
Query: 804 VEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTL 863
+ + L + DI P+ + ++++ LS N L ++ G+F +SL L
Sbjct: 158 LRYLNLGMCNLKDI---------PNLTALVRLEELELSGNRL-DLIRPGSFQGLTSLRKL 207
Query: 864 DLSYNYLNGSIPDWIDGLSQLSHLNLAHNNL 894
L + + + D L L LNL+HNNL
Sbjct: 208 WLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 33.5 bits (75), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 94/243 (38%), Gaps = 40/243 (16%)
Query: 285 NLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLES 344
N L++ +N I + ++ LR L+ L LS +R + + PSLNTL L
Sbjct: 36 NTRYLNLQENSIQVIRTD-TFKHLRHLEILQLSKNLVRKIE--VGAFNGLPSLNTLELFD 92
Query: 345 NNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSG 404
N T TQ + L L L ++ + S+ + PSL+ L + + +S
Sbjct: 93 NRLTT--VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISE 149
Query: 405 QGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPXXXXXXXXXXXXXXXXXRILDQGLCP 464
F +L +L++ + + +P L
Sbjct: 150 AAFEGLVNLRYLNLGMCNL-----------KDIP----------------------NLTA 176
Query: 465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 524
L L+EL + N L P TSLR L + Q+ +I + L S+EEL LS+
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV-ATIERNAFDDLKSLEELNLSH 235
Query: 525 NHF 527
N+
Sbjct: 236 NNL 238
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 461 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 520
GL L L+ LY+ NN + L+ T L L + NQ++ + PL LT ++ L
Sbjct: 127 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 181
Query: 521 RLSNNHFRIPVSLEPLFNHSKLKIFDAK--NNEINGEIN 557
LS NH +L L N L++F + N IN + N
Sbjct: 182 YLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSN 220
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 461 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 520
GL L L+ LY+ NN + L+ T L L + NQ++ + PL LT ++ L
Sbjct: 147 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 201
Query: 521 RLSNNHFRIPVSLEPLFNHSKLKIF 545
LS NH +L L N L++F
Sbjct: 202 YLSKNHISDLRALAGLKNLDVLELF 226
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 461 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 520
GL L L+ LY+ NN + L+ T L L + NQ++ + PL LT ++ L
Sbjct: 147 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 201
Query: 521 RLSNNHFRIPVSLEPLFNHSKLKIF 545
LS NH +L L N L++F
Sbjct: 202 YLSKNHISDLRALAGLKNLDVLELF 226
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 461 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 520
GL L L+ LY+ NN + L+ T L L + NQ++ + PL LT ++ L
Sbjct: 147 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 201
Query: 521 RLSNNHFRIPVSLEPLFNHSKLKIF 545
LS NH +L L N L++F
Sbjct: 202 YLSKNHISDLRALAGLKNLDVLELF 226
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 25/151 (16%)
Query: 756 QSLSKCSSLKGLYLNNNNLSGKIPRW------------LGNLKGLQHIVMPKNHLEGPIP 803
Q+ S L+ L+L NN + IP + LG LK L++I + EG +
Sbjct: 101 QAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELKRLEYI--SEAAFEGLVN 157
Query: 804 VEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTL 863
+ + L + DI P+ + ++++ LS N L ++ G+F +SL L
Sbjct: 158 LRYLNLGMCNLKDI---------PNLTALVRLEELELSGNRL-DLIRPGSFQGLTSLRKL 207
Query: 864 DLSYNYLNGSIPDWIDGLSQLSHLNLAHNNL 894
L + + + D L L LNL+HNNL
Sbjct: 208 WLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 94/243 (38%), Gaps = 40/243 (16%)
Query: 285 NLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLES 344
N L++ +N I + ++ LR L+ L LS +R + + PSLNTL L
Sbjct: 36 NTRYLNLQENSIQVIRTD-TFKHLRHLEILQLSKNLVRKIE--VGAFNGLPSLNTLELFD 92
Query: 345 NNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSG 404
N T TQ + L L L ++ + S+ + PSL+ L + + +S
Sbjct: 93 NRLTT--VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRRLDLGELKRLEYISE 149
Query: 405 QGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPXXXXXXXXXXXXXXXXXRILDQGLCP 464
F +L +L++ + + +P L
Sbjct: 150 AAFEGLVNLRYLNLGMCNL-----------KDIP----------------------NLTA 176
Query: 465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 524
L L+EL + N L P TSLR L + Q+ +I + L S+EEL LS+
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQV-ATIERNAFDDLKSLEELNLSH 235
Query: 525 NHF 527
N+
Sbjct: 236 NNL 238
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 461 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 520
GL L L+ LY+ NN + L+ T L L + NQ++ + PL LT ++ L
Sbjct: 149 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 203
Query: 521 RLSNNHFRIPVSLEPLFNHSKLKIFDAK--NNEINGEIN 557
LS NH +L L N L++F + N IN + N
Sbjct: 204 YLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSN 242
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 461 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 520
GL L L+ LY+ NN + L+ T L L + NQ++ + PL LT ++ L
Sbjct: 124 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 178
Query: 521 RLSNNHFRIPVSLEPLFNHSKLKIF 545
LS NH +L L N L++F
Sbjct: 179 YLSKNHISDLRALAGLKNLDVLELF 203
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 72/167 (43%), Gaps = 4/167 (2%)
Query: 730 IFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQ 789
+F ++ L L L G F G QS +SLK L L+ N + +LG L+ L+
Sbjct: 47 VFDKLTQLTKLS-LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLE 104
Query: 790 HIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNISGSLPSCFYPLSIKQV-HLSKNMLHG 847
H+ ++L+ F L +L LDIS + + F LS +V ++ N
Sbjct: 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164
Query: 848 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNL 894
F +L LDLS L P + LS L LN++HNN
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%)
Query: 985 LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044
L LDLS +L P +L+ +Q LN+SHNN + L ++ LD S N +
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
Query: 1045 GKIPRQL 1051
++L
Sbjct: 237 TSKKQEL 243
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 461 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 520
GL L L+ LY+ NN + L+ T L L + NQ++ + PL LT ++ L
Sbjct: 124 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLACLTKLQNL 178
Query: 521 RLSNNHFRIPVSLEPLFNHSKLKIF--DAKNNEINGEIN 557
LS NH +L L N L++F +A N IN + N
Sbjct: 179 YLSKNHISDLRALCGLKNLDVLELFSQEALNKPINHQSN 217
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 33.9 bits (76), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 25/145 (17%)
Query: 762 SSLKGLYLNNNNLSGKIPRW------------LGNLKGLQHIVMPKNHLEGPIPVEFCRL 809
S L+ L+L NN + IP + LG LK L++I EG F L
Sbjct: 147 SKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYIS------EG----AFEGL 195
Query: 810 DSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY 869
+L+ L++ NI +P+ + ++++ +S N +++ G+F SSL L + +
Sbjct: 196 FNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQ 253
Query: 870 LNGSIPDWIDGLSQLSHLNLAHNNL 894
++ + DGL+ L LNLAHNNL
Sbjct: 254 VSLIERNAFDGLASLVELNLAHNNL 278
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 37/191 (19%)
Query: 737 LRNLRWLLLEGNHFVGEIPQSLSKCS----SLKGLYLNNNNLSG--KIPRWLGNLKGLQH 790
L++L +L L N V E ++ S C SL+ L L+ N+L K L LK L
Sbjct: 359 LKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 417
Query: 791 IVMPKNHLEGPIP---------------------VEFCRLDSLQILDISDNNISGSLPSC 829
+ + +N P+P V+ C +L++LD+S+NN+ S
Sbjct: 418 LDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF--SL 474
Query: 830 FYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLN 888
F P ++++++S+N L L + + F L+ + ++ N L S+PD I D L+ L +
Sbjct: 475 FLP-RLQELYISRNKLK-TLPDASLFPV--LLVMKIASNQLK-SVPDGIFDRLTSLQKIW 529
Query: 889 LAHNNLEGEVP 899
L N + P
Sbjct: 530 LHTNPWDCSCP 540
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 811 SLQILDISDNNIS----GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 866
+++ LD+S N I+ G L +C + QV + K+ ++ F++ SL LDLS
Sbjct: 53 AMKSLDLSFNKITYIGHGDLRAC----ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 108
Query: 867 YNYLNGSIPDWIDGLSQLSHLNLAHN 892
N+L+ W LS L +LNL N
Sbjct: 109 DNHLSSLSSSWFGPLSSLKYLNLMGN 134
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 618 LEFLYLVNDSLAGPFRLP--IHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMN 675
L LYL +SL LP I + LR LD+S+N +P E+G L YF N
Sbjct: 249 LTRLYLNGNSLT---ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCF-QLKYFYFFDN 303
Query: 676 ALDGSIPSSFGNVIFLQFLDLSNNKLTGEI 705
+ ++P FGN+ LQFL + N L +
Sbjct: 304 MV-TTLPWEFGNLCNLQFLGVEGNPLEKQF 332
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 1007 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 1066
T I LNL+HN L F+ + SLD+ +N +S P L L + + +N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 1067 LSGKIPEWTAQFAT 1080
LS ++ + T F T
Sbjct: 85 LS-QLSDKTFAFCT 97
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 832 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH 891
P +I ++L+ N L +L F S L +LD+ +N ++ P+ L L LNL H
Sbjct: 24 PTNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82
Query: 892 NNL 894
N L
Sbjct: 83 NEL 85
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 611 LLENNTKLEFLYLVNDSLAGPFRL-----PIHSHK---RLRFLDVSNNNFQGHIPVEIGD 662
+LE KLE L L +++LA ++ PI+ K L L++ +N F IPVE+
Sbjct: 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFK 557
Query: 663 ILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG 703
L L ++ +N L+ S F N + L+ L+L N +T
Sbjct: 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three
Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three
Fabs (Form2)
Length = 694
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 1007 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 1066
T I LNL+HN L F+ + SLD+ +N +S P L L + + +N
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 1067 LSGKIPEWTAQFAT 1080
LS ++ + T F T
Sbjct: 95 LS-QLSDKTFAFCT 107
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 832 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH 891
P +I ++L+ N L +L F S L +LD+ +N ++ P+ L L LNL H
Sbjct: 34 PTNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 92
Query: 892 NNL 894
N L
Sbjct: 93 NEL 95
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 611 LLENNTKLEFLYLVNDSLAGPFRL-----PIHSHK---RLRFLDVSNNNFQGHIPVEIGD 662
+LE KLE L L +++LA ++ PI+ K L L++ +N F IPVE+
Sbjct: 509 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFK 567
Query: 663 ILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG 703
L L ++ +N L+ S F N + L+ L+L N +T
Sbjct: 568 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 608
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.5 bits (75), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 1007 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 1066
T I LNL+HN L F+ + SLD+ +N +S P L L + + +N
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 1067 LSGKIPEWTAQFAT 1080
LS ++ + T F T
Sbjct: 90 LS-QLSDKTFAFCT 102
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 832 PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH 891
P +I ++L+ N L +L F S L +LD+ +N ++ P+ L L LNL H
Sbjct: 29 PTNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 87
Query: 892 NNL 894
N L
Sbjct: 88 NEL 90
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 611 LLENNTKLEFLYLVNDSLAGPFRL-----PIHSHK---RLRFLDVSNNNFQGHIPVEIGD 662
+LE KLE L L +++LA ++ PI+ K L L++ +N F IPVE+
Sbjct: 504 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFK 562
Query: 663 ILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG 703
L L ++ +N L+ S F N + L+ L+L N +T
Sbjct: 563 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 603
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 37/184 (20%)
Query: 640 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG--SIPSSFGNVIFLQFLDLS 697
+ L FLDVS N F G + ++ P+L Y N S N + +P S L+ L++S
Sbjct: 277 QSLTFLDVSENIFSG-----LSELPPNLYYLNASSNEIRSLCDLPPS------LEELNVS 325
Query: 698 NNKLT--GEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRWLLLEGNHF--VGE 753
NNKL +P L H+ +NL+ L +E N +
Sbjct: 326 NNKLIELPALPPRLERLIASF-----------NHLAEVPELPQNLKQLHVEYNPLREFPD 374
Query: 754 IPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP-KNHLEGPIPVEFCRLDSL 812
IP+S+ L N+ ++P NLK L P + + P VE R++S
Sbjct: 375 IPESVED--------LRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSE 426
Query: 813 QILD 816
+++D
Sbjct: 427 RVVD 430
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 82/194 (42%), Gaps = 44/194 (22%)
Query: 340 LHLESNN-FTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEV 398
LHL N +T +L T L +T L L LD L + LQ G++ P L L +S ++
Sbjct: 36 LHLSENLLYTFSLAT---LMPYTRLTQLNLDRCEL--TKLQVDGTL-PVLGTLDLSHNQL 89
Query: 399 NGV-LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPXXXXXXXXXXXXXXXXXRI 457
+ L GQ P +L LD+ F R+ S+P
Sbjct: 90 QSLPLLGQTLP---ALTVLDVSFNRLT-----------SLPLG----------------- 118
Query: 458 LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 517
L L LQELY+ N+L+ P L T L L ++ NQLT + + L L ++
Sbjct: 119 ---ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENL 174
Query: 518 EELRLSNNH-FRIP 530
+ L L N + IP
Sbjct: 175 DTLLLQENSLYTIP 188
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 524
L L L + +N L+ SLP +L +LDVSFN+LT S+ L L ++EL L
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKG 133
Query: 525 NHFR-IPVSLEPLFNHSKLKIFDAKNNEIN 553
N + +P L L KL+ NN++
Sbjct: 134 NELKTLPPGL--LTPTPKLEKLSLANNQLT 161
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 979 GRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL 1038
G+ L L LD+S N+L + L +Q L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 1039 SYNKLSGKIPRQLVD-LNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLC 1093
+ N+L+ ++P L++ L L ++ N+L IP+ + GNP+LC
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 1004 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044
G L + TL+LSHN L ++PL L + LD+S+N+L+
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 82/194 (42%), Gaps = 44/194 (22%)
Query: 340 LHLESNN-FTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEV 398
LHL N +T +L T L +T L L LD L + LQ G++ P L L +S ++
Sbjct: 36 LHLSENLLYTFSLAT---LMPYTRLTQLNLDRCEL--TKLQVDGTL-PVLGTLDLSHNQL 89
Query: 399 NGV-LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPXXXXXXXXXXXXXXXXXRI 457
+ L GQ P +L LD+ F R+ S+P
Sbjct: 90 QSLPLLGQTLP---ALTVLDVSFNRLT-----------SLPLG----------------- 118
Query: 458 LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 517
L L LQELY+ N+L+ P L T L L ++ NQLT + + L L ++
Sbjct: 119 ---ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENL 174
Query: 518 EELRLSNNH-FRIP 530
+ L L N + IP
Sbjct: 175 DTLLLQENSLYTIP 188
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 524
L L L + +N L+ SLP +L +LDVSFN+LT S+ L L ++EL L
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKG 133
Query: 525 NHFR-IPVSLEPLFNHSKLKIFDAKNNEIN 553
N + +P L L KL+ NN++
Sbjct: 134 NELKTLPPGL--LTPTPKLEKLSLANNQLT 161
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 979 GRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL 1038
G+ L L LD+S N+L + L +Q L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 1039 SYNKLSGKIPRQLVD-LNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLC 1093
+ N+L+ ++P L++ L L ++ N+L IP+ + GNP+LC
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 1004 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044
G L + TL+LSHN L ++PL L + LD+S+N+L+
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 767 LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN-----N 821
L L +NNL+ WL N GL + + N LE + F ++ L+ L IS+N N
Sbjct: 237 LKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 294
Query: 822 ISGSLPSCFYPLSIKQ---VHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY----LNGSI 874
+ G L + +H+ +N E + + +S+VTL LS ++ L S
Sbjct: 295 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSH 354
Query: 875 PDW 877
DW
Sbjct: 355 NDW 357
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 14/127 (11%)
Query: 763 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN-- 820
L L L +NNL+ WL N GL + + N LE + F ++ L+ L IS+N
Sbjct: 227 ELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284
Query: 821 ---NISGSLPSCFYPLSIKQ---VHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY----L 870
N+ G L + +H+ +N E + + +S+VTL LS ++ L
Sbjct: 285 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL 344
Query: 871 NGSIPDW 877
S DW
Sbjct: 345 TLSHNDW 351
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 84/195 (43%), Gaps = 46/195 (23%)
Query: 340 LHLESNN-FTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEV 398
LHL N +T +L T L +T L L LD L + LQ G++ P L L +S ++
Sbjct: 36 LHLSENLLYTFSLAT---LMPYTRLTQLNLDRCEL--TKLQVDGTL-PVLGTLDLSHNQL 89
Query: 399 NGV-LSGQGFPHFKSLEHLDMRFARI-ALNTSFLQIIGESMPXXXXXXXXXXXXXXXXXR 456
+ L GQ P +L LD+ F R+ +L L+ +GE
Sbjct: 90 QSLPLLGQTLP---ALTVLDVSFNRLTSLPLGALRGLGE--------------------- 125
Query: 457 ILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTS 516
LQELY+ N+L+ P L T L L ++ NQLT + + L L +
Sbjct: 126 -----------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLEN 173
Query: 517 IEELRLSNNH-FRIP 530
++ L L N + IP
Sbjct: 174 LDTLLLQENSLYTIP 188
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 524
L L L + +N L+ SLP +L +LDVSFN+LT S+ L L ++EL L
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKG 133
Query: 525 NHFR-IPVSLEPLFNHSKLKIFDAKNNEIN 553
N + +P L L KL+ NN++
Sbjct: 134 NELKTLPPGL--LTPTPKLEKLSLANNQLT 161
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 1004 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044
G L + TL+LSHN L ++PL L + LD+S+N+L+
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
Score = 30.0 bits (66), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 979 GRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL 1038
G+ L L LD+S N+L + L +Q L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 1039 SYNKLSGKIPRQLVD-LNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLC 1093
+ N+L+ ++P L++ L L ++ N+L IP+ + GNP+LC
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 84/195 (43%), Gaps = 46/195 (23%)
Query: 340 LHLESNN-FTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEV 398
LHL N +T +L T L +T L L LD L + LQ G++ P L L +S ++
Sbjct: 36 LHLSENLLYTFSLAT---LMPYTRLTQLNLDRCEL--TKLQVDGTL-PVLGTLDLSHNQL 89
Query: 399 NGV-LSGQGFPHFKSLEHLDMRFARI-ALNTSFLQIIGESMPXXXXXXXXXXXXXXXXXR 456
+ L GQ P +L LD+ F R+ +L L+ +GE
Sbjct: 90 QSLPLLGQTLP---ALTVLDVSFNRLTSLPLGALRGLGE--------------------- 125
Query: 457 ILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTS 516
LQELY+ N+L+ P L T L L ++ NQLT + + L L +
Sbjct: 126 -----------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLEN 173
Query: 517 IEELRLSNNH-FRIP 530
++ L L N + IP
Sbjct: 174 LDTLLLQENSLYTIP 188
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 524
L L L + +N L+ SLP +L +LDVSFN+LT S+ L L ++EL L
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKG 133
Query: 525 NHFR-IPVSLEPLFNHSKLKIFDAKNNEIN 553
N + +P L L KL+ NN++
Sbjct: 134 NELKTLPPGL--LTPTPKLEKLSLANNQLT 161
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 1004 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044
G L + TL+LSHN L ++PL L + LD+S+N+L+
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 979 GRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL 1038
G+ L L LD+S N+L + L +Q L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 1039 SYNKLSGKIPRQLVD-LNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLC 1093
+ N+L+ ++P L++ L L ++ N+L IP+ + GNP+LC
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 458 LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 517
+ QGL P L EL++D N + L +L L +SFN ++ ++ + L + +
Sbjct: 186 IPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHL 242
Query: 518 EELRLSNNHF-RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLS 574
EL L+NN ++P L +H +++ NN I+ I + P + K S S
Sbjct: 243 RELHLNNNKLVKVPGGLA---DHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKKASYS 296
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 986 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS- 1044
A LDL NK+ NL + TL L +N ++ P F+ L +E L LS N+L
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 114
Query: 1045 --GKIPRQLVDL 1054
K+P+ L +L
Sbjct: 115 LPEKMPKTLQEL 126
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 458 LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 517
+ QGL P L EL++D N + L +L L +SFN ++ ++ + L + +
Sbjct: 186 IPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHL 242
Query: 518 EELRLSNNHF-RIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLS 574
EL L+NN ++P L +H +++ NN I+ I + P + K S S
Sbjct: 243 RELHLNNNKLVKVPGGLA---DHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKKASYS 296
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 986 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS- 1044
A LDL NK+ NL + TL L +N ++ P F+ L +E L LS N+L
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 114
Query: 1045 --GKIPRQLVDL 1054
K+P+ L +L
Sbjct: 115 LPEKMPKTLQEL 126
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 982 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 1041
L+ L L+LS N + I G LT +Q LN S N +T PL +NL +E LD+S N
Sbjct: 128 LTNLNRLELSSNT-ISDISALSG-LTSLQQLNFSSNQVTDLKPL--ANLTTLERLDISSN 183
Query: 1042 KLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 1072
K+S L L L I N +S P
Sbjct: 184 KVSDI--SVLAKLTNLESLIATNNQISDITP 212
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 276 DAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFP 335
D SL+NL +LD+ +N+I N+ GL KL L L I + + +
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISN----ISPLAGLT 283
Query: 336 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTL 368
+L L L N L + N NL YLTL
Sbjct: 284 ALTNLELNENQ----LEDISPISNLKNLTYLTL 312
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 105/249 (42%), Gaps = 31/249 (12%)
Query: 461 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 520
L L LQ+L +N + P LAN T+L LD+S N+++ S L LT++E L
Sbjct: 146 ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESL 200
Query: 521 RLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEING-EINESHSLTPKFQLKSLSLSSNYGD 579
+NN L L N +L +NG ++ + +L L L L++N
Sbjct: 201 IATNNQISDITPLGILTNLDEL--------SLNGNQLKDIGTLASLTNLTDLDLANNQIS 252
Query: 580 SVTFPKFLYHQHELK--EAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIH 637
++ L ELK ++S+I + T L L L + L PI
Sbjct: 253 NLAPLSGLTKLTELKLGANQISNISPLAGL--------TALTNLELNENQLEDIS--PIS 302
Query: 638 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS 697
+ K L +L + NN PV L L ++N ++ + SS N+ + +L
Sbjct: 303 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV-----SSLANLTNINWLSAG 357
Query: 698 NNKLTGEIP 706
+N+++ P
Sbjct: 358 HNQISDLTP 366
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 88/233 (37%), Gaps = 56/233 (24%)
Query: 816 DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP 875
D+ D +IS ++ +S++ ++L K+ + TF S L LDL+ +L +P
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHL-SELP 294
Query: 876 DWIDGLSQLSHLNLAHNNLEGEVPIXXXXXXXXXXXXXXXXXXHGLIPSCFDNTTLHESY 935
+ GLS L L L+ N E I
Sbjct: 295 SGLVGLSTLKKLVLSANKFENLCQI----------------------------------- 319
Query: 936 NNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 995
S+ + P T SI G K LE+ +N+ L LDLS + +
Sbjct: 320 ---SASNFPSLTHLSIKG-----NTKRLELGTGCLENLEN---------LRELDLSHDDI 362
Query: 996 VGH--IPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 1046
Q+ NL+ +Q+LNLS+N F +E LDL++ +L K
Sbjct: 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 95/395 (24%), Positives = 153/395 (38%), Gaps = 57/395 (14%)
Query: 504 GSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLT 563
SI PL + ++E L L +NH + L F KLK+ D +NN I+ E ++
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKED--MS 174
Query: 564 PKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL 623
Q +LSL+ N D + + + + L N+ ++ L+L
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGL--KNSTIQSLWL 232
Query: 624 VNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDI-LPSLVYFNISMNALDGSIP 682
G F + + D+S F+G + + I L +FNIS N
Sbjct: 233 ------GTF-------EDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN------- 272
Query: 683 SSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIFSLRNLRW 742
+F LQ LDL+ L+ E+P S + L L+
Sbjct: 273 -TFHCFSGLQELDLTATHLS-ELP-------------------------SGLVGLSTLKK 305
Query: 743 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR-WLGNLKGLQHIVMPKNHLEGP 801
L+L N F S S SL L + N ++ L NL+ L+ + + + +E
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365
Query: 802 --IPVEFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCS 858
++ L LQ L++S N F ++ + L+ L + + F N
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425
Query: 859 SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNN 893
L L+LS++ L+ S DGL L HLNL N+
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460
>pdb|3ZQW|A Chain A, Structure Of Cbm3b Of Major Scaffoldin Subunit Scaa From
Acetivibrio Cellulolyticus
pdb|3ZU8|A Chain A, Structure Of Cbm3b Of Major Scaffoldin Subunit Scaa From
Acetivibrio Cellulolyticus Determined On The Nikel
Absorption Edge
pdb|3ZUC|A Chain A, Tructure Of Cbm3b Of Major Scaffoldin Subunit Scaa From
Acetivibrio Cellulolyticus Determined From The Crystals
Grown In The Presence Of Nickel
Length = 153
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 23 FALLRLKHFFTDPYDKGATDCCQWEGVECSNTTGRVIGLYLSETYSGEY 71
A ++L ++FT DK T C W V SN TG + + + T + +Y
Sbjct: 38 LADVKLHYYFTVDGDKAQTFWCDWSPVGSSNVTGTFVKMNPTTTGADQY 86
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 465 LAHLQELYI------DNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIE 518
L HL++L + +N LR LP LA L +L S N L + +L ++
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV---DGVANLPRLQ 511
Query: 519 ELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGE 555
EL L NN + +++PL + +L + + + N + E
Sbjct: 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 465 LAHLQELYI------DNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIE 518
L HL++L + +N LR LP LA L +L S N L + +L ++
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV---DGVANLPRLQ 511
Query: 519 ELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGE 555
EL L NN + +++PL + +L + + + N + E
Sbjct: 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 140/335 (41%), Gaps = 62/335 (18%)
Query: 492 LRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNE 551
L ++ S NQLT +PL +LT + ++ ++NN L L N + L +F NN+
Sbjct: 65 LTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF---NNQ 118
Query: 552 INGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWL 611
I +I+ +LT L L LSSN +++ L L++ S ++ P
Sbjct: 119 I-TDIDPLKNLT---NLNRLELSSN---TISDISALSGLTSLQQLSFSSNQVTDLKP--- 168
Query: 612 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFN 671
L N T LE L + ++ ++ L ++ L L +NN +I DI P + N
Sbjct: 169 LANLTTLERLDISSNKVSDISVLAKLTN--LESLIATNN--------QISDITPLGILTN 218
Query: 672 ISMNALDGSIPSSFGNVIFLQF---LDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKG 728
+ +L+G+ G + L LDL+NN+++ P
Sbjct: 219 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---------------------- 256
Query: 729 HIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGL 788
+ L L L L N P L+ ++L L LN N L P + NLK L
Sbjct: 257 -----LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 307
Query: 789 QHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 823
++ + N++ PV L LQ L S+N +S
Sbjct: 308 TYLTLYFNNISDISPV--SSLTKLQRLFFSNNKVS 340
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 276 DAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFP 335
D SL+NL +LD+ +N+I N+ GL KL L L I + + +
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISN----ISPLAGLT 283
Query: 336 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTL 368
+L L L N L + N NL YLTL
Sbjct: 284 ALTNLELNENQ----LEDISPISNLKNLTYLTL 312
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 461 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 520
L L LQ+L +N + P LAN T+L LD+S N+++ S L LT++E L
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESL 200
Query: 521 RLSNNHF 527
+NN
Sbjct: 201 IATNNQI 207
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 1006 LTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 1065
LT +Q L+ S N +T PL +NL +E LD+S NK+S L L L I N
Sbjct: 150 LTSLQQLSFSSNQVTDLKPL--ANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 205
Query: 1066 NLSGKIP 1072
+S P
Sbjct: 206 QISDITP 212
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 524
L L L + +N L+ SLP +L +LDVSFN+LT S+ L L ++EL L
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKG 133
Query: 525 NHFR-IPVSLEPLFNHSKLKIFDAKNNEI 552
N + +P L L KL+ NN++
Sbjct: 134 NELKTLPPGL--LTPTPKLEKLSLANNDL 160
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 1004 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044
G L + TL+LSHN L ++PL L + LD+S+N+L+
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 81/194 (41%), Gaps = 44/194 (22%)
Query: 340 LHLESNN-FTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEV 398
LHL N +T +L T L +T L L LD L + LQ G++ P L L +S ++
Sbjct: 36 LHLSENLLYTFSLAT---LMPYTRLTQLNLDRCEL--TKLQVDGTL-PVLGTLDLSHNQL 89
Query: 399 NGV-LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPXXXXXXXXXXXXXXXXXRI 457
+ L GQ P +L LD+ F R+ S+P
Sbjct: 90 QSLPLLGQTLP---ALTVLDVSFNRLT-----------SLPLG----------------- 118
Query: 458 LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 517
L L LQELY+ N+L+ P L T L L ++ N LT + + L L ++
Sbjct: 119 ---ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENL 174
Query: 518 EELRLSNNH-FRIP 530
+ L L N + IP
Sbjct: 175 DTLLLQENSLYTIP 188
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 75/197 (38%), Gaps = 29/197 (14%)
Query: 635 PIHSHKRLRFLDVSNNNFQGHIPV--------------EIGDILP-----SLVYFNISMN 675
P+ + L +L V+ + + P+ +I DI P SL YF +N
Sbjct: 150 PLSNXTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVN 209
Query: 676 ALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXKGHIFSRIF 735
+ P N L L + NNK+T P LA + +
Sbjct: 210 QITDITP--VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLT 265
Query: 736 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 795
L+ L G++ + +I L+ S L L+LNNN L + +G L L + + +
Sbjct: 266 KLKXLNV----GSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQ 320
Query: 796 NHLEGPIPV-EFCRLDS 811
NH+ P+ + DS
Sbjct: 321 NHITDIRPLASLSKXDS 337
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 82/194 (42%), Gaps = 44/194 (22%)
Query: 340 LHLESNN-FTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEV 398
LHL N +T +L T L +T L L LD + L + LQ G++ P L L +S ++
Sbjct: 36 LHLSENLLYTFSLAT---LMPYTRLTQLNLDRAEL--TKLQVDGTL-PVLGTLDLSHNQL 89
Query: 399 NGV-LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPXXXXXXXXXXXXXXXXXRI 457
+ L GQ P +L LD+ F R+ S+P
Sbjct: 90 QSLPLLGQTLP---ALTVLDVSFNRLT-----------SLPLG----------------- 118
Query: 458 LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 517
L L LQELY+ N+L+ P L T L L ++ N LT + + L L ++
Sbjct: 119 ---ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENL 174
Query: 518 EELRLSNNH-FRIP 530
+ L L N + IP
Sbjct: 175 DTLLLQENSLYTIP 188
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 524
L L L + +N L+ SLP +L +LDVSFN+LT S+ L L ++EL L
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKG 133
Query: 525 NHFRI--PVSLEPLFNHSKLKIFDAKNN 550
N + P L P KL + A NN
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSL--ANNN 159
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 1004 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044
G L + TL+LSHN L ++PL L + LD+S+N+L+
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 82/194 (42%), Gaps = 44/194 (22%)
Query: 340 LHLESNN-FTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEV 398
LHL N +T +L T L +T L L LD + L + LQ G++ P L L +S ++
Sbjct: 36 LHLSENLLYTFSLAT---LMPYTRLTQLNLDRAEL--TKLQVDGTL-PVLGTLDLSHNQL 89
Query: 399 NGV-LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPXXXXXXXXXXXXXXXXXRI 457
+ L GQ P +L LD+ F R+ S+P
Sbjct: 90 QSLPLLGQTLP---ALTVLDVSFNRLT-----------SLPLG----------------- 118
Query: 458 LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 517
L L LQELY+ N+L+ P L T L L ++ N LT + + L L ++
Sbjct: 119 ---ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENL 174
Query: 518 EELRLSNNH-FRIP 530
+ L L N + IP
Sbjct: 175 DTLLLQENSLYTIP 188
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 524
L L L + +N L+ SLP +L +LDVSFN+LT S+ L L ++EL L
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKG 133
Query: 525 NHFRI--PVSLEPLFNHSKLKIFDAKNN 550
N + P L P KL + A NN
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSL--ANNN 159
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 1004 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044
G L + TL+LSHN L ++PL L + LD+S+N+L+
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 276 DAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFP 335
D SL+NL +LD+ +N+I N+ GL KL L L I + + +
Sbjct: 235 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISN----ISPLAGLT 287
Query: 336 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTL 368
+L L L N L + N NL YLTL
Sbjct: 288 ALTNLELNENQ----LEDISPISNLKNLTYLTL 316
>pdb|2WGV|A Chain A, Crystal Structure Of The Oxa-10 V117t Mutant At Ph 6.5
Inhibited By A Chloride Ion
pdb|2WGV|B Chain B, Crystal Structure Of The Oxa-10 V117t Mutant At Ph 6.5
Inhibited By A Chloride Ion
pdb|2WGW|B Chain B, Crystal Structure Of The Oxa-10 V117t Mutant At Ph 8.0
Length = 248
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 941 PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP 1000
P FK +I G + V K ++F++ K A R L+L + +S + I
Sbjct: 47 PASTFKIPNAIIGLETGVIKNEHQVFKWDGKPRAMKQWERDLTLRGAIQVSATPVFQQIA 106
Query: 1001 PQIGNL---TRIQTLNLSHNNLTGTI-------PLTFSNLRHIESLDLSY-NKLSGKIPR 1049
++G + ++ + + N++G I L S + +E L+ Y NKLS
Sbjct: 107 REVGEVRMQKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQVEFLESLYLNKLSASKEN 166
Query: 1050 QLV 1052
QL+
Sbjct: 167 QLI 169
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 82/194 (42%), Gaps = 44/194 (22%)
Query: 340 LHLESNN-FTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEV 398
LHL N +T +L T L +T L L LD + L + LQ G++ P L L +S ++
Sbjct: 36 LHLSENLLYTFSLAT---LMPYTRLTQLNLDRAEL--TKLQVDGTL-PVLGTLDLSHNQL 89
Query: 399 NGV-LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPXXXXXXXXXXXXXXXXXRI 457
+ L GQ P +L LD+ F R+ S+P
Sbjct: 90 QSLPLLGQTLP---ALTVLDVSFNRLT-----------SLPLG----------------- 118
Query: 458 LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 517
L L LQELY+ N+L+ P L T L L ++ N LT + + L L ++
Sbjct: 119 ---ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENL 174
Query: 518 EELRLSNNH-FRIP 530
+ L L N + IP
Sbjct: 175 DTLLLQENSLYTIP 188
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 524
L L L + +N L+ SLP +L +LDVSFN+LT S+ L L ++EL L
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKG 133
Query: 525 NHFRI--PVSLEPLFNHSKLKIFDAKNN 550
N + P L P KL + A NN
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSL--ANNN 159
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 1004 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044
G L + TL+LSHN L ++PL L + LD+S+N+L+
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 276 DAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFP 335
D SL+NL +LD+ +N+I N+ GL KL L L I + + +
Sbjct: 234 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISN----ISPLAGLT 286
Query: 336 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTL 368
+L L L N L + N NL YLTL
Sbjct: 287 ALTNLELNENQ----LEDISPISNLKNLTYLTL 315
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 276 DAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFP 335
D SL+NL +LD+ +N+I N+ GL KL L L I + + +
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISN----ISPLAGLT 282
Query: 336 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTL 368
+L L L N L + N NL YLTL
Sbjct: 283 ALTNLELNENQ----LEDISPISNLKNLTYLTL 311
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 276 DAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFP 335
D SL+NL +LD+ +N+I N+ GL KL L L I + + +
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISN----ISPLAGLT 282
Query: 336 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTL 368
+L L L N L + N NL YLTL
Sbjct: 283 ALTNLELNENQ----LEDISPISNLKNLTYLTL 311
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 138/336 (41%), Gaps = 65/336 (19%)
Query: 492 LRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNE 551
L ++ S NQLT +PL +LT + ++ ++NN L L N + L +F NN+
Sbjct: 65 LTQINFSNNQLT---DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF---NNQ 118
Query: 552 INGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEA-ELSHIKMIGEFPNW 610
I +I+ +LT L L LSSN ++ L +L +++ +K +
Sbjct: 119 I-TDIDPLKNLT---NLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANL--- 171
Query: 611 LLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYF 670
T LE L + ++ ++ L ++ L L +NN +I DI P +
Sbjct: 172 -----TTLERLDISSNKVSDISVLAKLTN--LESLIATNN--------QISDITPLGILT 216
Query: 671 NISMNALDGSIPSSFGNVIFLQF---LDLSNNKLTGEIPDHLAMCCVXXXXXXXXXXXXK 727
N+ +L+G+ G + L LDL+NN+++ P
Sbjct: 217 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--------------------- 255
Query: 728 GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG 787
+ L L L L N P L+ ++L L LN N L P + NLK
Sbjct: 256 ------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN 305
Query: 788 LQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 823
L ++ + N++ PV L LQ L S+N +S
Sbjct: 306 LTYLTLYFNNISDISPV--SSLTKLQRLFFSNNKVS 339
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 276 DAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFP 335
D SL+NL +LD+ +N+I N+ GL KL L L I + + +
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISN----ISPLAGLT 283
Query: 336 SLNTLHLESNNFTATLTTTQELHNFTNLEYLTL 368
+L L L N L + N NL YLTL
Sbjct: 284 ALTNLELNENQ----LEDISPISNLKNLTYLTL 312
Score = 30.8 bits (68), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 105/249 (42%), Gaps = 31/249 (12%)
Query: 461 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEEL 520
L L LQ+L +N + P LAN T+L LD+S N+++ S L LT++E L
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVS---DISVLAKLTNLESL 200
Query: 521 RLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEING-EINESHSLTPKFQLKSLSLSSNYGD 579
+NN L L N +L +NG ++ + +L L L L++N
Sbjct: 201 IATNNQISDITPLGILTNLDEL--------SLNGNQLKDIGTLASLTNLTDLDLANNQIS 252
Query: 580 SVTFPKFLYHQHELK--EAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIH 637
++ L ELK ++S+I + T L L L + L PI
Sbjct: 253 NLAPLSGLTKLTELKLGANQISNISPLAGL--------TALTNLELNENQLEDIS--PIS 302
Query: 638 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLS 697
+ K L +L + NN PV L L ++N ++ + SS N+ + +L
Sbjct: 303 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV-----SSLANLTNINWLSAG 357
Query: 698 NNKLTGEIP 706
+N+++ P
Sbjct: 358 HNQISDLTP 366
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 982 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 1041
L+ L L+LS N + I G LT +Q L+ S N +T PL +NL +E LD+S N
Sbjct: 128 LTNLNRLELSSNT-ISDISALSG-LTSLQQLSFSSNQVTDLKPL--ANLTTLERLDISSN 183
Query: 1042 KLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 1072
K+S L L L I N +S P
Sbjct: 184 KVSDI--SVLAKLTNLESLIATNNQISDITP 212
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 524
L L L + +N L+ SLP +L +LDVSFN+LT S+ L L ++EL L
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKG 133
Query: 525 NHFRI--PVSLEPLFNHSKLKIFDAKNN 550
N + P L P KL + A NN
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSL--ANNN 159
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 1004 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044
G L + TL+LSHN L ++PL L + LD+S+N+L+
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 81/194 (41%), Gaps = 44/194 (22%)
Query: 340 LHLESNN-FTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEV 398
LHL N +T +L T L +T L L LD L + LQ G++ P L L +S ++
Sbjct: 36 LHLSENLLYTFSLAT---LMPYTRLTQLNLDRCEL--TKLQVDGTL-PVLGTLDLSHNQL 89
Query: 399 NGV-LSGQGFPHFKSLEHLDMRFARIALNTSFLQIIGESMPXXXXXXXXXXXXXXXXXRI 457
+ L GQ P +L LD+ F R+ S+P
Sbjct: 90 QSLPLLGQTLP---ALTVLDVSFNRLT-----------SLPLG----------------- 118
Query: 458 LDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSI 517
L L LQELY+ N+L+ P L T L L ++ N LT + + L L ++
Sbjct: 119 ---ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENL 174
Query: 518 EELRLSNNH-FRIP 530
+ L L N + IP
Sbjct: 175 DTLLLQENSLYTIP 188
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN 524
L L L + +N L+ SLP +L +LDVSFN+LT S+ L L ++EL L
Sbjct: 77 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKG 134
Query: 525 NHFRI--PVSLEPLFNHSKLKIFDAKNN 550
N + P L P KL + A NN
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSL--ANNN 160
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 1004 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044
G L + TL+LSHN L ++PL L + LD+S+N+L+
Sbjct: 75 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 114
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 83/195 (42%), Gaps = 46/195 (23%)
Query: 340 LHLESNN-FTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEV 398
LHL N +T +L T L +T L L LD L + LQ G++ P L L +S ++
Sbjct: 37 LHLSENLLYTFSLAT---LMPYTRLTQLNLDRCEL--TKLQVDGTL-PVLGTLDLSHNQL 90
Query: 399 NGV-LSGQGFPHFKSLEHLDMRFARI-ALNTSFLQIIGESMPXXXXXXXXXXXXXXXXXR 456
+ L GQ P +L LD+ F R+ +L L+ +GE
Sbjct: 91 QSLPLLGQTLP---ALTVLDVSFNRLTSLPLGALRGLGE--------------------- 126
Query: 457 ILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTS 516
LQELY+ N+L+ P L T L L ++ N LT + + L L +
Sbjct: 127 -----------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLEN 174
Query: 517 IEELRLSNNH-FRIP 530
++ L L N + IP
Sbjct: 175 LDTLLLQENSLYTIP 189
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 809 LDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK-NMLHGQLK---EGTFFNCSSLVTLD 864
L L LD+S N++S P F L +HL K M+ Q++ F N SLV ++
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGL----MHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261
Query: 865 LSYNYLNGSIPDWIDGLSQLSHLNLAHN 892
L++N L D L L ++L HN
Sbjct: 262 LAHNNLTLLPHDLFTPLHHLERIHLHHN 289
>pdb|1H8Y|A Chain A, Crystal Structure Of The Class D Beta-lactamase Oxa-13 In
Complex With Meropenem
pdb|1H8Y|B Chain B, Crystal Structure Of The Class D Beta-lactamase Oxa-13 In
Complex With Meropenem
pdb|1H8Z|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
pdb|1H8Z|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
pdb|1H5X|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
Complexed With Imipenem
pdb|1H5X|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-13
Complexed With Imipenem
Length = 247
Score = 30.4 bits (67), Expect = 6.7, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 941 PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP 1000
P FK +I G + V K ++F++ K A R LSL + +S + I
Sbjct: 46 PASTFKIPSAIIGLETGVIKNEHQVFKWDGKPRAMKQWERDLSLRGAIQVSAVPVFQQIA 105
Query: 1001 PQIGNL---TRIQTLNLSHNNLTGTI-------PLTFSNLRHIESLD-LSYNKLSGKIPR 1049
++G + ++ + + N++G I L S + +E L+ L NKLS
Sbjct: 106 REVGEVRMQKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQVEFLESLFLNKLSASKEN 165
Query: 1050 QLV 1052
QL+
Sbjct: 166 QLI 168
>pdb|1K6R|A Chain A, Structure Of The Class D Beta-Lactamase Oxa-10 In Complex
With Moxalactam
pdb|1K6R|B Chain B, Structure Of The Class D Beta-Lactamase Oxa-10 In Complex
With Moxalactam
Length = 248
Score = 29.6 bits (65), Expect = 9.6, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 941 PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP 1000
P FK +I G + V K ++F++ K A R L+L + +S + I
Sbjct: 47 PASTFKIPNAIIGLETGVIKNEHQVFKWDGKPRAMKQWERDLTLRGAIQVSAVPVFQQIA 106
Query: 1001 PQIGNL---TRIQTLNLSHNNLTGTI-------PLTFSNLRHIESLDLSY-NKLSGKIPR 1049
++G + ++ + + N++G I L S + +E L+ Y NKLS
Sbjct: 107 REVGEVRMQKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQVEFLESLYLNKLSASKEN 166
Query: 1050 QLV 1052
QL+
Sbjct: 167 QLI 169
>pdb|2HP5|A Chain A, Crystal Structure Of The Oxa-10 W154g Mutant At Ph 7.0
pdb|2HP5|B Chain B, Crystal Structure Of The Oxa-10 W154g Mutant At Ph 7.0
pdb|2HP5|C Chain C, Crystal Structure Of The Oxa-10 W154g Mutant At Ph 7.0
pdb|2HP5|D Chain D, Crystal Structure Of The Oxa-10 W154g Mutant At Ph 7.0
Length = 248
Score = 29.6 bits (65), Expect = 9.6, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 941 PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP 1000
P FK +I G + V K ++F++ K A R L+L + +S + I
Sbjct: 47 PASTFKIPNAIIGLETGVIKNEHQVFKWDGKPRAMKQWERDLTLRGAIQVSAVPVFQQIA 106
Query: 1001 PQIGNL---TRIQTLNLSHNNLTGTI-------PLTFSNLRHIESLDLSY-NKLSGKIPR 1049
++G + ++ + + N++G I L S + +E L+ Y NKLS
Sbjct: 107 REVGEVRMQKYLKKFSYGNQNISGGIDKFGLEGQLRISAVNQVEFLESLYLNKLSASKEN 166
Query: 1050 QLV 1052
QL+
Sbjct: 167 QLI 169
>pdb|2HP6|A Chain A, Crystal Structure Of The Oxa-10 W154a Mutant At Ph 7.5
pdb|2HP6|B Chain B, Crystal Structure Of The Oxa-10 W154a Mutant At Ph 7.5
pdb|2HP9|A Chain A, Crystal Structure Of The Oxa-10 W154a Mutant At Ph 6.0
pdb|2HP9|B Chain B, Crystal Structure Of The Oxa-10 W154a Mutant At Ph 6.0
pdb|2HPB|A Chain A, Crystal Structure Of The Oxa-10 W154a Mutant At Ph 9.0
pdb|2HPB|B Chain B, Crystal Structure Of The Oxa-10 W154a Mutant At Ph 9.0
pdb|2WGI|A Chain A, Crystal Structure Of The Acyl-Enzyme Oxa-10 W154a-
Benzylpenicillin At Ph 6
pdb|2WGI|B Chain B, Crystal Structure Of The Acyl-Enzyme Oxa-10 W154a-
Benzylpenicillin At Ph 6
Length = 248
Score = 29.6 bits (65), Expect = 9.7, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 941 PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP 1000
P FK +I G + V K ++F++ K A R L+L + +S + I
Sbjct: 47 PASTFKIPNAIIGLETGVIKNEHQVFKWDGKPRAMKQWERDLTLRGAIQVSAVPVFQQIA 106
Query: 1001 PQIGNL---TRIQTLNLSHNNLTGTI-------PLTFSNLRHIESLDLSY-NKLSGKIPR 1049
++G + ++ + + N++G I L S + +E L+ Y NKLS
Sbjct: 107 REVGEVRMQKYLKKFSYGNQNISGGIDKFALEGQLRISAVNQVEFLESLYLNKLSASKEN 166
Query: 1050 QLV 1052
QL+
Sbjct: 167 QLI 169
>pdb|1EWZ|A Chain A, Crystal Structure Of The Oxa-10 Beta-Lactamase From
Pseudomonas Aeruginosa
pdb|1EWZ|B Chain B, Crystal Structure Of The Oxa-10 Beta-Lactamase From
Pseudomonas Aeruginosa
pdb|1EWZ|C Chain C, Crystal Structure Of The Oxa-10 Beta-Lactamase From
Pseudomonas Aeruginosa
pdb|1EWZ|D Chain D, Crystal Structure Of The Oxa-10 Beta-Lactamase From
Pseudomonas Aeruginosa
pdb|1E3U|A Chain A, Mad Structure Of Oxa10 Class D Beta-Lactamase
pdb|1E3U|B Chain B, Mad Structure Of Oxa10 Class D Beta-Lactamase
pdb|1E3U|C Chain C, Mad Structure Of Oxa10 Class D Beta-Lactamase
pdb|1K54|C Chain C, Oxa-10 Class D Beta-Lactamase Partially Acylated With
Reacted 6beta- (1-Hydroxy-1-Methylethyl) Penicillanic
Acid
pdb|1K54|D Chain D, Oxa-10 Class D Beta-Lactamase Partially Acylated With
Reacted 6beta- (1-Hydroxy-1-Methylethyl) Penicillanic
Acid
pdb|1K56|D Chain D, Oxa 10 Class D Beta-Lactamase At Ph 6.5
pdb|1K57|C Chain C, Oxa 10 Class D Beta-lactamase At Ph 6.0
pdb|1K57|D Chain D, Oxa 10 Class D Beta-lactamase At Ph 6.0
Length = 246
Score = 29.6 bits (65), Expect = 9.8, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 941 PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP 1000
P FK +I G + V K ++F++ K A R L+L + +S + I
Sbjct: 45 PASTFKIPNAIIGLETGVIKNEHQVFKWDGKPRAMKQWERDLTLRGAIQVSAVPVFQQIA 104
Query: 1001 PQIGNL---TRIQTLNLSHNNLTGTI-------PLTFSNLRHIESLDLSY-NKLSGKIPR 1049
++G + ++ + + N++G I L S + +E L+ Y NKLS
Sbjct: 105 REVGEVRMQKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQVEFLESLYLNKLSASKEN 164
Query: 1050 QLV 1052
QL+
Sbjct: 165 QLI 167
>pdb|1FOF|A Chain A, Crystal Structure Of The Class D Beta-Lactamase Oxa-10
pdb|1FOF|B Chain B, Crystal Structure Of The Class D Beta-Lactamase Oxa-10
Length = 246
Score = 29.6 bits (65), Expect = 9.8, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 941 PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP 1000
P FK +I G + V K ++F++ K A R L+L + +S + I
Sbjct: 46 PASTFKIPNAIIGLETGVIKNEHQVFKWDGKPRAMKQWERDLTLRGAIQVSAVPVFQQIA 105
Query: 1001 PQIGNL---TRIQTLNLSHNNLTGTI-------PLTFSNLRHIESLDLSY-NKLSGKIPR 1049
++G + ++ + + N++G I L S + +E L+ Y NKLS
Sbjct: 106 REVGEVRMQKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQVEFLESLYLNKLSASKEN 165
Query: 1050 QLV 1052
QL+
Sbjct: 166 QLI 168
>pdb|1E3U|D Chain D, Mad Structure Of Oxa10 Class D Beta-Lactamase
Length = 246
Score = 29.6 bits (65), Expect = 9.8, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 941 PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP 1000
P FK +I G + V K ++F++ K A R L+L + +S + I
Sbjct: 45 PASTFKIPNAIIGLETGVIKNEHQVFKWPGKPRAMKQWERDLTLRGAIQVSAVPVFQQIA 104
Query: 1001 PQIGNL---TRIQTLNLSHNNLTGTI-------PLTFSNLRHIESLDLSY-NKLSGKIPR 1049
++G + ++ + + N++G I L S + +E L+ Y NKLS
Sbjct: 105 REVGEVRMQKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQVEFLESLYLNKLSASKEN 164
Query: 1050 QLV 1052
QL+
Sbjct: 165 QLI 167
>pdb|2RL3|B Chain B, Crystal Structure Of The Oxa-10 W154h Mutant At Ph 7
Length = 248
Score = 29.6 bits (65), Expect = 10.0, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 941 PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP 1000
P FK +I G + V K ++F++ K A R L+L + +S + I
Sbjct: 47 PASTFKIPNAIIGLETGVIKNEHQVFKWDGKPRAMKQWERDLTLRGAIQVSAVPVFQQIA 106
Query: 1001 PQIGNL---TRIQTLNLSHNNLTGTI-------PLTFSNLRHIESLDLSY-NKLSGKIPR 1049
++G + ++ + + N++G I L S + +E L+ Y NKLS
Sbjct: 107 REVGEVRMQKYLKKFSYGNQNISGGIDKFHLEGQLRISAVNQVEFLESLYLNKLSASKEN 166
Query: 1050 QLV 1052
QL+
Sbjct: 167 QLI 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,807,045
Number of Sequences: 62578
Number of extensions: 1257926
Number of successful extensions: 3761
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 2449
Number of HSP's gapped (non-prelim): 939
length of query: 1180
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1070
effective length of database: 8,089,757
effective search space: 8656039990
effective search space used: 8656039990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)