Query 001036
Match_columns 1180
No_of_seqs 956 out of 5670
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 14:01:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001036.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001036hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.5E-61 3.2E-66 628.1 43.4 542 466-1096 69-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.3E-56 7.2E-61 578.0 42.0 519 490-1096 69-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 4.8E-39 1E-43 344.9 6.8 378 641-1099 79-459 (873)
4 KOG4194 Membrane glycoprotein 100.0 5.9E-37 1.3E-41 328.9 2.4 299 621-923 83-382 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.4E-38 5.2E-43 325.2 -13.5 475 466-1068 45-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 3E-38 6.6E-43 324.5 -12.9 389 635-1092 109-541 (565)
7 KOG0444 Cytoskeletal regulator 100.0 2.7E-32 5.9E-37 294.4 -4.5 359 641-1065 8-372 (1255)
8 KOG0444 Cytoskeletal regulator 100.0 5.3E-32 1.1E-36 292.2 -4.2 384 568-1064 9-395 (1255)
9 KOG0618 Serine/threonine phosp 100.0 6.5E-32 1.4E-36 306.8 -6.4 486 467-1065 22-510 (1081)
10 KOG0618 Serine/threonine phosp 100.0 1.1E-30 2.4E-35 296.8 -0.3 474 583-1093 13-490 (1081)
11 KOG4237 Extracellular matrix p 99.9 2.7E-26 5.9E-31 236.9 -3.2 294 626-933 53-349 (498)
12 PLN03210 Resistant to P. syrin 99.9 4.7E-22 1E-26 257.5 28.4 339 635-1042 553-904 (1153)
13 PLN03210 Resistant to P. syrin 99.9 4.1E-22 8.9E-27 258.0 27.1 339 657-1065 550-903 (1153)
14 PRK15387 E3 ubiquitin-protein 99.9 1.6E-21 3.4E-26 232.1 17.4 264 666-1051 202-465 (788)
15 PRK15387 E3 ubiquitin-protein 99.8 8.8E-21 1.9E-25 225.8 17.5 267 641-1030 202-468 (788)
16 KOG4237 Extracellular matrix p 99.8 2.5E-23 5.5E-28 215.1 -5.1 387 466-916 67-498 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 5.1E-19 1.1E-23 212.8 11.3 203 665-919 178-380 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 7.4E-19 1.6E-23 211.4 11.5 220 644-895 182-401 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.4E-18 5.1E-23 194.6 -0.9 66 854-919 161-234 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.5E-18 3.3E-23 196.2 -3.0 218 780-1066 75-318 (319)
21 KOG0617 Ras suppressor protein 99.7 3.4E-18 7.4E-23 156.4 -3.9 163 833-1055 33-196 (264)
22 KOG0617 Ras suppressor protein 99.6 1.5E-17 3.3E-22 152.2 -4.8 167 854-1079 29-196 (264)
23 PLN03150 hypothetical protein; 99.6 4.3E-15 9.4E-20 179.3 10.6 118 984-1101 419-538 (623)
24 PLN03150 hypothetical protein; 99.3 2.8E-12 6.2E-17 155.0 11.3 113 908-1073 420-533 (623)
25 KOG0532 Leucine-rich repeat (L 99.3 1.9E-13 4.2E-18 149.0 -5.1 173 835-1070 77-249 (722)
26 KOG1909 Ran GTPase-activating 99.2 4.8E-12 1.1E-16 130.8 2.3 262 80-373 27-310 (382)
27 COG4886 Leucine-rich repeat (L 99.1 9.2E-11 2E-15 136.3 8.7 198 790-1073 97-295 (394)
28 COG4886 Leucine-rich repeat (L 99.1 2E-10 4.4E-15 133.4 7.8 65 854-921 228-292 (394)
29 KOG0532 Leucine-rich repeat (L 99.0 1E-11 2.2E-16 135.9 -3.9 175 638-823 73-247 (722)
30 KOG1909 Ran GTPase-activating 99.0 7.3E-11 1.6E-15 122.3 1.9 223 56-298 30-284 (382)
31 KOG4341 F-box protein containi 99.0 8.7E-11 1.9E-15 124.3 2.1 291 208-501 139-437 (483)
32 KOG3207 Beta-tubulin folding c 99.0 2.1E-10 4.7E-15 122.0 3.7 115 282-397 119-233 (505)
33 KOG3207 Beta-tubulin folding c 98.9 3.6E-10 7.9E-15 120.3 1.5 140 234-375 196-340 (505)
34 KOG4658 Apoptotic ATPase [Sign 98.9 2.8E-09 6.1E-14 131.3 8.2 106 56-172 523-630 (889)
35 PF14580 LRR_9: Leucine-rich r 98.8 3.1E-09 6.8E-14 104.2 4.5 129 108-267 16-148 (175)
36 KOG1259 Nischarin, modulator o 98.8 1.4E-09 3.1E-14 109.6 0.9 59 858-919 284-342 (490)
37 KOG4658 Apoptotic ATPase [Sign 98.8 3.7E-09 8E-14 130.3 4.4 107 57-171 546-653 (889)
38 PF14580 LRR_9: Leucine-rich r 98.8 8.7E-09 1.9E-13 101.1 6.1 112 203-323 15-127 (175)
39 KOG1259 Nischarin, modulator o 98.8 3.9E-09 8.4E-14 106.5 3.1 224 110-374 181-412 (490)
40 PF13855 LRR_8: Leucine rich r 98.8 5.8E-09 1.2E-13 83.9 3.5 60 984-1043 2-61 (61)
41 KOG4341 F-box protein containi 98.7 2.9E-09 6.3E-14 113.0 0.6 310 183-497 139-459 (483)
42 PF13855 LRR_8: Leucine rich r 98.7 1E-08 2.2E-13 82.5 3.4 61 1007-1067 1-61 (61)
43 KOG2120 SCF ubiquitin ligase, 98.7 1.3E-09 2.9E-14 109.9 -2.2 109 208-319 186-296 (419)
44 KOG0531 Protein phosphatase 1, 98.6 4.9E-09 1.1E-13 121.7 -0.3 226 758-1073 91-323 (414)
45 KOG2120 SCF ubiquitin ligase, 98.6 5.9E-09 1.3E-13 105.4 -0.9 87 236-323 186-274 (419)
46 COG5238 RNA1 Ran GTPase-activa 98.5 1.8E-08 3.8E-13 100.6 0.3 261 82-375 29-317 (388)
47 KOG0531 Protein phosphatase 1, 98.4 2.9E-08 6.2E-13 115.3 -1.3 130 81-220 70-199 (414)
48 KOG2982 Uncharacterized conser 98.4 1.8E-07 4E-12 94.8 3.3 211 112-349 46-263 (418)
49 COG5238 RNA1 Ran GTPase-activa 98.2 3.2E-07 7E-12 91.8 1.3 185 202-399 87-285 (388)
50 KOG4579 Leucine-rich repeat (L 98.1 1E-07 2.2E-12 85.3 -4.6 58 985-1044 79-136 (177)
51 PF08263 LRRNT_2: Leucine rich 98.1 3.3E-06 7.1E-11 61.7 3.8 34 19-52 2-43 (43)
52 KOG2982 Uncharacterized conser 98.1 8.6E-07 1.9E-11 90.1 0.9 87 206-294 70-156 (418)
53 KOG1859 Leucine-rich repeat pr 98.0 2E-07 4.3E-12 105.5 -5.4 17 636-652 105-121 (1096)
54 KOG1859 Leucine-rich repeat pr 98.0 1.7E-07 3.6E-12 106.1 -7.4 90 459-555 180-269 (1096)
55 KOG3665 ZYG-1-like serine/thre 97.9 7.7E-06 1.7E-10 98.8 4.1 143 111-253 122-268 (699)
56 PF12799 LRR_4: Leucine Rich r 97.7 2.3E-05 5E-10 57.3 2.9 36 1008-1044 2-37 (44)
57 KOG4579 Leucine-rich repeat (L 97.7 1.6E-06 3.5E-11 77.8 -3.8 132 764-924 29-164 (177)
58 PF12799 LRR_4: Leucine Rich r 97.6 3.4E-05 7.3E-10 56.4 2.5 37 984-1021 2-38 (44)
59 PRK15386 type III secretion pr 97.6 0.00017 3.6E-09 80.0 8.0 57 1007-1067 156-218 (426)
60 KOG3665 ZYG-1-like serine/thre 97.5 8.8E-05 1.9E-09 89.8 5.9 136 259-398 148-287 (699)
61 PRK15386 type III secretion pr 97.4 0.00065 1.4E-08 75.5 9.8 15 615-629 51-65 (426)
62 KOG1947 Leucine rich repeat pr 97.3 9.1E-05 2E-09 89.2 2.4 14 514-527 426-439 (482)
63 KOG1644 U2-associated snRNP A' 97.3 0.00044 9.4E-09 67.2 5.9 87 662-751 39-126 (233)
64 PF13306 LRR_5: Leucine rich r 97.3 0.0006 1.3E-08 64.9 6.7 95 664-764 34-128 (129)
65 PF13306 LRR_5: Leucine rich r 97.2 0.00072 1.6E-08 64.4 6.9 108 657-770 4-111 (129)
66 KOG1947 Leucine rich repeat pr 97.2 0.00018 3.9E-09 86.6 2.4 39 283-321 268-307 (482)
67 KOG1644 U2-associated snRNP A' 96.9 0.0013 2.9E-08 64.0 5.2 85 208-298 43-127 (233)
68 KOG2123 Uncharacterized conser 96.4 0.00037 7.9E-09 70.8 -2.2 102 259-367 19-123 (388)
69 KOG2739 Leucine-rich acidic nu 96.3 0.0024 5.2E-08 65.2 2.8 89 80-174 40-130 (260)
70 KOG2123 Uncharacterized conser 96.2 0.0004 8.7E-09 70.5 -3.2 84 135-221 19-102 (388)
71 KOG4308 LRR-containing protein 96.2 0.00012 2.6E-09 84.8 -8.3 201 85-300 89-306 (478)
72 KOG2739 Leucine-rich acidic nu 95.8 0.004 8.6E-08 63.7 1.8 85 206-296 42-128 (260)
73 PF00560 LRR_1: Leucine Rich R 95.6 0.0047 1E-07 37.4 0.8 19 1009-1028 2-20 (22)
74 PF00560 LRR_1: Leucine Rich R 95.3 0.0069 1.5E-07 36.7 0.6 21 1032-1053 1-21 (22)
75 KOG4308 LRR-containing protein 92.5 0.0077 1.7E-07 70.0 -5.4 69 203-271 111-184 (478)
76 KOG0473 Leucine-rich repeat pr 90.0 0.011 2.3E-07 58.9 -6.4 82 984-1068 43-124 (326)
77 PF13504 LRR_7: Leucine rich r 89.7 0.21 4.6E-06 27.9 1.3 11 1033-1043 3-13 (17)
78 PF13504 LRR_7: Leucine rich r 89.5 0.19 4.1E-06 28.1 1.0 13 1008-1020 2-14 (17)
79 KOG3864 Uncharacterized conser 89.1 0.22 4.7E-06 49.2 1.8 84 286-371 103-186 (221)
80 KOG3864 Uncharacterized conser 85.5 0.28 6E-06 48.5 0.3 87 236-347 102-188 (221)
81 smart00370 LRR Leucine-rich re 85.4 0.59 1.3E-05 29.6 1.7 13 1008-1020 3-15 (26)
82 smart00369 LRR_TYP Leucine-ric 85.4 0.59 1.3E-05 29.6 1.7 13 1008-1020 3-15 (26)
83 smart00369 LRR_TYP Leucine-ric 85.4 0.62 1.3E-05 29.5 1.8 23 905-927 1-23 (26)
84 smart00370 LRR Leucine-rich re 85.4 0.62 1.3E-05 29.5 1.8 23 905-927 1-23 (26)
85 KOG0473 Leucine-rich repeat pr 81.9 0.05 1.1E-06 54.3 -6.4 99 990-1092 25-124 (326)
86 KOG4242 Predicted myosin-I-bin 75.4 17 0.00037 41.1 9.6 34 337-370 356-389 (553)
87 PF13516 LRR_6: Leucine Rich r 73.4 3 6.6E-05 25.7 2.0 21 361-381 2-22 (24)
88 PF13516 LRR_6: Leucine Rich r 73.1 2 4.2E-05 26.5 1.1 21 235-255 2-22 (24)
89 smart00365 LRR_SD22 Leucine-ri 72.0 3.1 6.8E-05 26.3 1.8 15 1030-1044 1-15 (26)
90 smart00364 LRR_BAC Leucine-ric 63.6 4.5 9.8E-05 25.5 1.2 13 1008-1020 3-15 (26)
91 PF08693 SKG6: Transmembrane a 62.4 3.4 7.3E-05 29.1 0.6 6 1148-1153 34-39 (40)
92 KOG3763 mRNA export factor TAP 54.2 12 0.00026 43.3 3.5 32 361-392 270-307 (585)
93 PF15102 TMEM154: TMEM154 prot 49.3 18 0.00039 34.0 3.2 22 1131-1152 66-87 (146)
94 smart00368 LRR_RI Leucine rich 48.8 22 0.00048 22.9 2.7 23 361-383 2-24 (28)
95 KOG4242 Predicted myosin-I-bin 48.1 1E+02 0.0022 35.3 9.2 17 136-152 215-231 (553)
96 TIGR00864 PCC polycystin catio 46.7 5.7 0.00012 54.9 -0.5 36 1037-1072 1-36 (2740)
97 PHA03099 epidermal growth fact 45.7 13 0.00029 33.5 1.7 31 1130-1160 106-136 (139)
98 PF01102 Glycophorin_A: Glycop 34.6 24 0.00052 32.4 1.7 18 1128-1145 68-85 (122)
99 PF04478 Mid2: Mid2 like cell 30.3 23 0.00049 33.6 0.8 26 1127-1152 54-79 (154)
100 KOG3763 mRNA export factor TAP 30.0 32 0.00069 40.0 2.0 68 333-400 216-284 (585)
101 PF05393 Hum_adeno_E3A: Human 29.2 36 0.00079 28.5 1.7 35 1131-1171 37-71 (94)
102 smart00367 LRR_CC Leucine-rich 29.2 37 0.0008 21.3 1.4 12 335-346 2-13 (26)
103 PF08114 PMP1_2: ATPase proteo 28.4 44 0.00096 23.5 1.7 7 1145-1151 28-34 (43)
104 TIGR00864 PCC polycystin catio 24.9 40 0.00087 47.4 1.9 32 989-1020 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.5e-61 Score=628.08 Aligned_cols=542 Identities=34% Similarity=0.523 Sum_probs=498.1
Q ss_pred CCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcEE
Q 001036 466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF 545 (1180)
Q Consensus 466 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l 545 (1180)
.+++.|++++|.+.+.++..+..+++|+.|++++|++.+.+|...+..+++|++|++++|.+++.+|. ..+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEE
Confidence 47899999999999999999999999999999999999888666666899999999999999877765 346777777
Q ss_pred ecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccC
Q 001036 546 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN 625 (1180)
Q Consensus 546 ~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~ 625 (1180)
++++|.+.+ .+|..+..+++|++|++++|.+.+.+|.. +.++++|+.|++++
T Consensus 146 ~Ls~n~~~~---------------------------~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~ 197 (968)
T PLN00113 146 DLSNNMLSG---------------------------EIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLAS 197 (968)
T ss_pred ECcCCcccc---------------------------cCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccC
Confidence 777776542 35667778889999999999999999987 46899999999999
Q ss_pred CcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCccccccc
Q 001036 626 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI 705 (1180)
Q Consensus 626 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~i 705 (1180)
|.+.+..|..+..+++|+.|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..++++++|+.|++++|++++.+
T Consensus 198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 276 (968)
T PLN00113 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276 (968)
T ss_pred CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC
Confidence 9999999999999999999999999999999988876 899999999999999999999999999999999999999889
Q ss_pred ChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCC
Q 001036 706 PDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 785 (1180)
Q Consensus 706 p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 785 (1180)
|..+. .+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+
T Consensus 277 p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~ 355 (968)
T PLN00113 277 PPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355 (968)
T ss_pred chhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC
Confidence 88874 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcC-CCcccEEEcCCcccccccCcccccCCCCCcEEE
Q 001036 786 KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLD 864 (1180)
Q Consensus 786 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 864 (1180)
++|+.|++++|++.+.+|..++.+++|+.|++++|++.+.+|..+. ..+|+.|++++|.+++.+|. .|.++++|+.|+
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~ 434 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS-EFTKLPLVYFLD 434 (968)
T ss_pred CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh-hHhcCCCCCEEE
Confidence 9999999999999999999999999999999999999999998764 46899999999999999888 899999999999
Q ss_pred CcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCC
Q 001036 865 LSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKP 944 (1180)
Q Consensus 865 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~ 944 (1180)
+++|.+++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.||+++|++++.+|..|.+++
T Consensus 435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~-------------- 499 (968)
T PLN00113 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLS-------------- 499 (968)
T ss_pred CcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhh--------------
Confidence 99999999999999999999999999999999998876 458999999999999999988776543
Q ss_pred CccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCcccccccccc
Q 001036 945 FKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIP 1024 (1180)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p 1024 (1180)
.|+.|+|++|+++|.+|..++++++|++|+|++|.++|.+|
T Consensus 500 ---------------------------------------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 540 (968)
T PLN00113 500 ---------------------------------------ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540 (968)
T ss_pred ---------------------------------------ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC
Confidence 78999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccccccCCccccCCCCCCCCCC
Q 001036 1025 LTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 1096 (1180)
Q Consensus 1025 ~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~ 1096 (1180)
..|+++++|+.|||++|+++|.+|..+..++.|+.+++++|+++|.+|. .+++.++...++.|||.+|+.+
T Consensus 541 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~-~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 541 ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC-cchhcccChhhhcCCccccCCc
Confidence 9999999999999999999999999999999999999999999999998 7889999999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.3e-56 Score=578.02 Aligned_cols=519 Identities=33% Similarity=0.515 Sum_probs=483.8
Q ss_pred CCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcEEecCCcccccccccccCCCCcccce
Q 001036 490 TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLK 569 (1180)
Q Consensus 490 ~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~L~ 569 (1180)
.+++.|++++|.+.|.+ +..+..+++|+.|++++|.+.+.+|...+..+++|++|++++|.+.+..+.
T Consensus 69 ~~v~~L~L~~~~i~~~~-~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~----------- 136 (968)
T PLN00113 69 SRVVSIDLSGKNISGKI-SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR----------- 136 (968)
T ss_pred CcEEEEEecCCCccccC-ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-----------
Confidence 57999999999999887 678999999999999999999889888788999999999999987643221
Q ss_pred EEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccCCcccCCCCCCCCCCCCccEEEccC
Q 001036 570 SLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSN 649 (1180)
Q Consensus 570 ~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 649 (1180)
..++.|++|++++|.+.+.+|.. +.++++|+.|++++|.+.+..|..+..+++|++|++++
T Consensus 137 ------------------~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 197 (968)
T PLN00113 137 ------------------GSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197 (968)
T ss_pred ------------------cccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccC
Confidence 23567899999999999999987 56899999999999999999999999999999999999
Q ss_pred CcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCccccc
Q 001036 650 NNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH 729 (1180)
Q Consensus 650 n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~ 729 (1180)
|.+.+.+|..+.. +++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..+ ..+++|++|++++|.+++.
T Consensus 198 n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~ 275 (968)
T PLN00113 198 NQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL-GNLKNLQYLFLYQNKLSGP 275 (968)
T ss_pred CCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH-hCCCCCCEEECcCCeeecc
Confidence 9999999988876 8999999999999999999999999999999999999998899877 5899999999999999999
Q ss_pred ccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCC
Q 001036 730 IFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRL 809 (1180)
Q Consensus 730 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 809 (1180)
.|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|.++..+++|+.|++++|.+.+.+|..+..+
T Consensus 276 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~ 355 (968)
T PLN00113 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355 (968)
T ss_pred CchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEccCCcccccCCCCcC-CCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEe
Q 001036 810 DSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLN 888 (1180)
Q Consensus 810 ~~L~~L~l~~n~l~~~~p~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 888 (1180)
++|+.|++++|++++.+|..+. ..+++.+++++|.+.+.+|. .+.++++|+.|++++|++++.+|..|..+++|+.|+
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 434 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK-SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434 (968)
T ss_pred CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH-HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence 9999999999999999998764 46899999999999999998 899999999999999999999999999999999999
Q ss_pred cCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhh
Q 001036 889 LAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEF 968 (1180)
Q Consensus 889 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 968 (1180)
+++|++++.+|..+..+++|+.|++++|++.|.+|..++.
T Consensus 435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~---------------------------------------- 474 (968)
T PLN00113 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS---------------------------------------- 474 (968)
T ss_pred CcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc----------------------------------------
Confidence 9999999999999999999999999999999988875531
Q ss_pred ccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCC
Q 001036 969 TTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 1048 (1180)
Q Consensus 969 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip 1048 (1180)
+.|+.||+++|+++|.+|..+.++++|+.|+|++|+++|.+|..++++++|+.|+|++|+++|.+|
T Consensus 475 --------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 540 (968)
T PLN00113 475 --------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540 (968)
T ss_pred --------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC
Confidence 268999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCEEEcCCCcCcccCCCcccccccCCccccCCCCCCCCCC
Q 001036 1049 RQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 1096 (1180)
Q Consensus 1049 ~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~ 1096 (1180)
..+..++.|+.||+++|+++|.+|..+..+..+...++.+|+..+..|
T Consensus 541 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 541 ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 999999999999999999999999988888889999999999887655
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4.8e-39 Score=344.90 Aligned_cols=378 Identities=26% Similarity=0.309 Sum_probs=255.9
Q ss_pred CccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEE
Q 001036 641 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLS 720 (1180)
Q Consensus 641 ~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~ 720 (1180)
..+.||+++|.+. .+....+..+++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+ ++.......++.|+.||
T Consensus 79 ~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 79 QTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLD 155 (873)
T ss_pred ceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhh
Confidence 3445666666665 444444445666666666666666 45554444445666666666665 45444445566666666
Q ss_pred ccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCC
Q 001036 721 LSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG 800 (1180)
Q Consensus 721 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 800 (1180)
||.|.++.+.-..|..-.++++|+|++|.++......|.++.+|.+|.|+.|+++...+..|.++++|+.|+|..|++.-
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 66666665555555555666666666666666656666666666666666666664444555666666666666666653
Q ss_pred CCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhc
Q 001036 801 PIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG 880 (1180)
Q Consensus 801 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~ 880 (1180)
.--..|.++++|+.|.+..|.++ .+.+++|.++.+++.|+|+.|+++..-..|+.+
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~------------------------kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDIS------------------------KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcc------------------------cccCcceeeecccceeecccchhhhhhcccccc
Confidence 33445666666666666666665 355567888888888888888887777778888
Q ss_pred CCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhh
Q 001036 881 LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEK 960 (1180)
Q Consensus 881 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 960 (1180)
+++|+.|+|+.|.|....++.+...++|++|||++|+++...++.|..
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~-------------------------------- 339 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV-------------------------------- 339 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH--------------------------------
Confidence 888888888888888777777777788888888888887766665543
Q ss_pred hhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccc---cccCCCCCCEEE
Q 001036 961 KILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPL---TFSNLRHIESLD 1037 (1180)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~---~~~~l~~L~~L~ 1037 (1180)
+..|++|.|++|++...-...|..+++|+.|||++|.|++.|-+ .|..|++|+.|+
T Consensus 340 ---------------------L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~ 398 (873)
T KOG4194|consen 340 ---------------------LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR 398 (873)
T ss_pred ---------------------HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence 33677778888888766667777788888888888888877755 367778888888
Q ss_pred CcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccccccCCccccCCCCCCCCCCCCC
Q 001036 1038 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPI 1099 (1180)
Q Consensus 1038 Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~l~~ 1099 (1180)
|.+|+|..+...+|..+..|+.||+.+|.+-..-|..+.++ .+...-+..-.++|+|.+.|
T Consensus 399 l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~W 459 (873)
T KOG4194|consen 399 LTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKW 459 (873)
T ss_pred ecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHH
Confidence 88888876666677888888888888887776666655555 45555555566788887654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-37 Score=328.91 Aligned_cols=299 Identities=24% Similarity=0.239 Sum_probs=154.7
Q ss_pred EEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcc
Q 001036 621 LYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 700 (1180)
Q Consensus 621 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 700 (1180)
|++++|.+....+..|.++++|+.+.+..|.++ .||..... ..+++.|+|.+|.|+.+-...+..++.|+.||||.|.
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~ 160 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL 160 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch
Confidence 444444444333334444445555555555554 45543332 3445555555555555555555555555555555555
Q ss_pred cccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcc
Q 001036 701 LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR 780 (1180)
Q Consensus 701 l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~ 780 (1180)
|+ ++|...|..-.++++|+|++|.++..-...|.++.+|.+|.|+.|+++...+..|.++++|+.|+|..|++.-.---
T Consensus 161 is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 161 IS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred hh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence 55 55554444445555666666655555555555555666666666666554445555566666666666655422223
Q ss_pred cccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCc-CCCcccEEEcCCcccccccCcccccCCCC
Q 001036 781 WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCF-YPLSIKQVHLSKNMLHGQLKEGTFFNCSS 859 (1180)
Q Consensus 781 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 859 (1180)
.|..+++|+.|.+..|.+...-...|..+.++++|+|+.|++...-..++ +..+|+.|++|+|.+.. |..+++.-+++
T Consensus 240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r-ih~d~Wsftqk 318 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR-IHIDSWSFTQK 318 (873)
T ss_pred hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe-eecchhhhccc
Confidence 45555666666666666555555555566666666666666552211111 11122222222222221 11124444555
Q ss_pred CcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCC
Q 001036 860 LVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP 923 (1180)
Q Consensus 860 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 923 (1180)
|++|||++|+|+...+..|..+..|++|+|++|++...-...|..+++|+.|||++|.+++.+.
T Consensus 319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE 382 (873)
T ss_pred ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence 6666666666655555556666666666666666555555555555556666666655555443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.4e-38 Score=325.21 Aligned_cols=475 Identities=26% Similarity=0.377 Sum_probs=300.6
Q ss_pred CCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcEE
Q 001036 466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF 545 (1180)
Q Consensus 466 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l 545 (1180)
..++.+.+++|.+... ...+.++..|+++++++|+++ ++ |.+++.+..++.++.++|++. .+|. ....+.+|+.+
T Consensus 45 v~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~l-p~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l~~l 119 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QL-PAAIGELEALKSLNVSHNKLS-ELPE-QIGSLISLVKL 119 (565)
T ss_pred cchhhhhhccCchhhc-cHhhhcccceeEEEeccchhh-hC-CHHHHHHHHHHHhhcccchHh-hccH-HHhhhhhhhhh
Confidence 4567777888877633 344677777888888888776 45 456677777777777777665 2221 12333344444
Q ss_pred ecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccC
Q 001036 546 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN 625 (1180)
Q Consensus 546 ~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~ 625 (1180)
++++|.+. .- |+. ++.+..++.++..+
T Consensus 120 ~~s~n~~~---------------------------------------------------el-~~~-i~~~~~l~dl~~~~ 146 (565)
T KOG0472|consen 120 DCSSNELK---------------------------------------------------EL-PDS-IGRLLDLEDLDATN 146 (565)
T ss_pred hcccccee---------------------------------------------------ec-Cch-HHHHhhhhhhhccc
Confidence 44444332 21 222 23444555555555
Q ss_pred CcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCccccccc
Q 001036 626 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEI 705 (1180)
Q Consensus 626 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~i 705 (1180)
|+++. .|..+.++.++..+++.+|++. ..|+..-. ++.|+.||.-.|.+. .+|..++++.+|..|++.+|++. .+
T Consensus 147 N~i~s-lp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~l 221 (565)
T KOG0472|consen 147 NQISS-LPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FL 221 (565)
T ss_pred ccccc-CchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cC
Confidence 55543 2444556666777777777776 55555554 677777777777665 56777777777777777777776 66
Q ss_pred ChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCC
Q 001036 706 PDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNL 785 (1180)
Q Consensus 706 p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 785 (1180)
|+ |.+|..|.+++++.|++.....+...+++++.+|||++|+++ ..|..+..+.+|++||+|+|.++ .+|..++++
T Consensus 222 Pe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl 297 (565)
T KOG0472|consen 222 PE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL 297 (565)
T ss_pred CC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence 62 246777777777777776443344446777777777777776 56666777777777777777776 566667777
Q ss_pred CCCCeEEccCCcCCCCCCccccCCC---CCCEEE-------ccCC---------cccccCCCCcCCCcccEEEcCCcccc
Q 001036 786 KGLQHIVMPKNHLEGPIPVEFCRLD---SLQILD-------ISDN---------NISGSLPSCFYPLSIKQVHLSKNMLH 846 (1180)
Q Consensus 786 ~~L~~L~l~~n~l~~~~~~~~~~l~---~L~~L~-------l~~n---------~l~~~~p~~~~~~~L~~L~l~~n~~~ 846 (1180)
.|+.|.+.+|.+... ...+-+.. -|++|. ++.- ...+..|+.....+.+.|++++-+++
T Consensus 298 -hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 298 -HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT 375 (565)
T ss_pred -eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence 777777777765421 11111000 011110 0000 00111222222235666777776665
Q ss_pred cccCcccccCCC--CCcEEECcCccCccccchhhhcCCCCCE-EecCCCccccCCCccccCCCCCCEEECcCCcCcccCC
Q 001036 847 GQLKEGTFFNCS--SLVTLDLSYNYLNGSIPDWIDGLSQLSH-LNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP 923 (1180)
Q Consensus 847 ~~~~~~~~~~~~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~-L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 923 (1180)
.+|...|.... -....+++.|++. .+|..+..++.+.. +.+++|.+ +.+|..++.+++|..|+|++|.+. .+|
T Consensus 376 -~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP 451 (565)
T KOG0472|consen 376 -LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLP 451 (565)
T ss_pred -cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcc
Confidence 46654444322 3667788888887 66776766665554 34444444 477888888888888888888776 344
Q ss_pred CCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccc
Q 001036 924 SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI 1003 (1180)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~ 1003 (1180)
..++. +..|+.||+|+|+|. .+|..+
T Consensus 452 ~e~~~-----------------------------------------------------lv~Lq~LnlS~NrFr-~lP~~~ 477 (565)
T KOG0472|consen 452 EEMGS-----------------------------------------------------LVRLQTLNLSFNRFR-MLPECL 477 (565)
T ss_pred hhhhh-----------------------------------------------------hhhhheecccccccc-cchHHH
Confidence 44433 225788888888887 788888
Q ss_pred cCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCc
Q 001036 1004 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 1068 (1180)
Q Consensus 1004 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~ 1068 (1180)
..+..++.+-.++|++....|+.+.+|.+|..|||.+|.+. .||..++++++|+.|++++|++.
T Consensus 478 y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 478 YELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 88878887777778888666666888888888888888888 78888888888888888888887
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3e-38 Score=324.49 Aligned_cols=389 Identities=31% Similarity=0.439 Sum_probs=267.8
Q ss_pred CCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCC
Q 001036 635 PIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCV 714 (1180)
Q Consensus 635 ~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~ 714 (1180)
.+++..+++.++++.|.+. .+|++++. +-.+..++..+|+++ ..|..+.++.++..+++.+|+++ ..|+... .++
T Consensus 109 ~i~s~~~l~~l~~s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~ 183 (565)
T KOG0472|consen 109 QIGSLISLVKLDCSSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHI-AMK 183 (565)
T ss_pred HHhhhhhhhhhhcccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHH-HHH
Confidence 3445566777777777776 67777776 667777777777777 56667777777777888888777 5555543 377
Q ss_pred CCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCccccc-CCCCCCeEEc
Q 001036 715 NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLG-NLKGLQHIVM 793 (1180)
Q Consensus 715 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~l 793 (1180)
.|++||...|-++ .+|+.++.+.+|..|+|..|++. ..| .|.+|+.|++|+++.|.+. .+|+... ++.++.+||+
T Consensus 184 ~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDL 259 (565)
T KOG0472|consen 184 RLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDL 259 (565)
T ss_pred HHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeec
Confidence 7778877777775 56777777788888888888776 455 6777788888888777776 6666555 6777888888
Q ss_pred cCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccc-------------------------
Q 001036 794 PKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQ------------------------- 848 (1180)
Q Consensus 794 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~------------------------- 848 (1180)
++|+++ ..|+.++-+.+|.+||+|+|.++ .+|..++...++.|.+.+|.+...
T Consensus 260 RdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dgl 337 (565)
T KOG0472|consen 260 RDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGL 337 (565)
T ss_pred cccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCC
Confidence 888776 67777777777888888888877 556666666777777777765310
Q ss_pred ------------cCccc---ccCCCCCcEEECcCccCccccchhhhcCC--CCCEEecCCCccccCCCccccCCCCCCE-
Q 001036 849 ------------LKEGT---FFNCSSLVTLDLSYNYLNGSIPDWIDGLS--QLSHLNLAHNNLEGEVPIQLCRLNQLQL- 910 (1180)
Q Consensus 849 ------------~~~~~---~~~~~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p~~~~~l~~L~~- 910 (1180)
.|... .....+.+.|++++-+++....+.|..-. -....++++|++. ++|..+..+..+++
T Consensus 338 S~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~ 416 (565)
T KOG0472|consen 338 SQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTD 416 (565)
T ss_pred CCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHH
Confidence 00000 11123334444444444422112221111 1334444444443 34443333333222
Q ss_pred EECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEc
Q 001036 911 LDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL 990 (1180)
Q Consensus 911 L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL 990 (1180)
+++++|.++ .+|..+ ..+++++.|+|
T Consensus 417 l~lsnn~is-fv~~~l-----------------------------------------------------~~l~kLt~L~L 442 (565)
T KOG0472|consen 417 LVLSNNKIS-FVPLEL-----------------------------------------------------SQLQKLTFLDL 442 (565)
T ss_pred HHhhcCccc-cchHHH-----------------------------------------------------Hhhhcceeeec
Confidence 222222221 122111 23568999999
Q ss_pred cCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCccc
Q 001036 991 SCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGK 1070 (1180)
Q Consensus 991 s~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ 1070 (1180)
++|-+. .+|.+++.+..|+.||+|+|+|. .+|..+-.+..+|.+-.++|++....|+.+.++..|..||+.+|.+..
T Consensus 443 ~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~- 519 (565)
T KOG0472|consen 443 SNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ- 519 (565)
T ss_pred ccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh-
Confidence 999998 89999999999999999999999 899999999999999999999997777779999999999999999994
Q ss_pred CCCcccccccCCccccCCCCCC
Q 001036 1071 IPEWTAQFATFNKSSYDGNPFL 1092 (1180)
Q Consensus 1071 ip~~~~~~~~~~~~~~~~N~~l 1092 (1180)
||...+.+.++....+.|||+-
T Consensus 520 IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 520 IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred CChhhccccceeEEEecCCccC
Confidence 5555899999999999999975
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2.7e-32 Score=294.37 Aligned_cols=359 Identities=26% Similarity=0.405 Sum_probs=185.7
Q ss_pred CccEEEccCCccc-ccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEE
Q 001036 641 RLRFLDVSNNNFQ-GHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFL 719 (1180)
Q Consensus 641 ~L~~L~l~~n~l~-~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L 719 (1180)
-.+-+|+++|.|+ +.+|.++-. +++++.|.+....+. .+|..++.+.+|+.|.+++|++. .+-..+ ..++.|+.+
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LRsv 83 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLRSV 83 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhHHH
Confidence 3455566666666 345555544 556666666555554 45556666666666666666554 333333 245556666
Q ss_pred EccCCccc-ccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcc-cccCCCCCCeEEccCCc
Q 001036 720 SLSNNSLK-GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPR-WLGNLKGLQHIVMPKNH 797 (1180)
Q Consensus 720 ~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~ 797 (1180)
.+..|++. .-+|..+..+..|+.|||++|++. ..|..+..-+++-+|+||+|+|. .||. -|.+++.|-.|++++|+
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence 66665553 234555555666666666666655 44555555555566666666655 3333 33455555566666665
Q ss_pred CCCCCCccccCCCCCCEEEccCCccccc-CCCCcCCCcccEEEcCCcccc-cccCcccccCCCCCcEEECcCccCccccc
Q 001036 798 LEGPIPVEFCRLDSLQILDISDNNISGS-LPSCFYPLSIKQVHLSKNMLH-GQLKEGTFFNCSSLVTLDLSYNYLNGSIP 875 (1180)
Q Consensus 798 l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 875 (1180)
+. ..|..+..+..|+.|+|++|++.-. +-..-...+|+.|++++.+-+ ..+|. ++..+.+|..+|+|.|.+. ..|
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp-~vP 238 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLP-IVP 238 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC-chhhhhhhhhccccccCCC-cch
Confidence 54 4444555555566666666554310 000001234444444443221 23444 4445555555555555554 445
Q ss_pred hhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCC
Q 001036 876 DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQ 955 (1180)
Q Consensus 876 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1180)
+.+-.+.+|+.|+|++|+|+ .+........+|+.|+||.|+++ .+|+++..
T Consensus 239 ecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK--------------------------- 289 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK--------------------------- 289 (1255)
T ss_pred HHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh---------------------------
Confidence 55555555555555555554 23333344445555555555554 23333322
Q ss_pred CchhhhhhhhhhhccccchhcccchhccccceEEccCCcccC-CCCccccCCCCCCEEeCccccccccccccccCCCCCC
Q 001036 956 GSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG-HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 1034 (1180)
Q Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~ 1034 (1180)
++.|+.|.+.+|+++- -||..||.+..|+++..++|.+. ..|+.+..+..|+
T Consensus 290 --------------------------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~ 342 (1255)
T KOG0444|consen 290 --------------------------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQ 342 (1255)
T ss_pred --------------------------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHH
Confidence 2244555555555432 25555555555555555555555 5555555555555
Q ss_pred EEECcCCcCcccCCccccCCCCCCEEEcCCC
Q 001036 1035 SLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 1065 (1180)
Q Consensus 1035 ~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N 1065 (1180)
.|.|++|+|- .+|+++.-++.|..||+..|
T Consensus 343 kL~L~~NrLi-TLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 343 KLKLDHNRLI-TLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred Hhccccccee-echhhhhhcCCcceeeccCC
Confidence 5555555555 55555555555555555555
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=5.3e-32 Score=292.19 Aligned_cols=384 Identities=27% Similarity=0.363 Sum_probs=241.8
Q ss_pred ceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccCCcccCCCCCCCCCCCCccEEEc
Q 001036 568 LKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDV 647 (1180)
Q Consensus 568 L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 647 (1180)
.+-.++++|......||.....++.++.|.+.+.++. .+|+. ++.+.+|+.|.+.+|++... ...+..++.|+.+++
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeE-L~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEE-LSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIV 85 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHH-HHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhh
Confidence 5667888888888888988888888888888776654 57777 45788888888888887643 345567777888888
Q ss_pred cCCcccc-cCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcc
Q 001036 648 SNNNFQG-HIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSL 726 (1180)
Q Consensus 648 ~~n~l~~-~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l 726 (1180)
..|++.. -||.+++. +..|..||+|+|+++ ..|..+..-+++-+|+||+|+|. +||..++.+++.|-+||||+|++
T Consensus 86 R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchh
Confidence 7777653 47777776 777888888888877 56777777777778888888887 77877777777777777777777
Q ss_pred cccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCC-CCCcccccCCCCCCeEEccCCcCCCCCCcc
Q 001036 727 KGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLS-GKIPRWLGNLKGLQHIVMPKNHLEGPIPVE 805 (1180)
Q Consensus 727 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~ 805 (1180)
. ..|+.+..+..|++|+|++|.+...--..+..+++|++|.+++.+-+ ..+|.++..+.+|..++++.|.+. .+|+.
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 6 34555566666666666666654332223334555555555554422 234555555555555555555554 44444
Q ss_pred ccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCC
Q 001036 806 FCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLS 885 (1180)
Q Consensus 806 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 885 (1180)
+..+++|+.|+||+|+++ .+.-..+.-.+|+
T Consensus 241 ly~l~~LrrLNLS~N~it-------------------------------------------------eL~~~~~~W~~lE 271 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKIT-------------------------------------------------ELNMTEGEWENLE 271 (1255)
T ss_pred HhhhhhhheeccCcCcee-------------------------------------------------eeeccHHHHhhhh
Confidence 445555555555555443 1222223333444
Q ss_pred EEecCCCccccCCCccccCCCCCCEEECcCCcCcc-cCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhh
Q 001036 886 HLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHG-LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILE 964 (1180)
Q Consensus 886 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 964 (1180)
.|+|+.|+++ .+|.+++.++.|+.|.+.+|+++- -+|+.++.+.
T Consensus 272 tLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~---------------------------------- 316 (1255)
T KOG0444|consen 272 TLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI---------------------------------- 316 (1255)
T ss_pred hhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh----------------------------------
Confidence 4444444444 344444444455545444444431 1333333322
Q ss_pred hhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCc
Q 001036 965 IFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044 (1180)
Q Consensus 965 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 1044 (1180)
.|+.+..++|++. ..|..+..+..|+.|.|++|++. ..|+.+.-++.|+.|||..|.=-
T Consensus 317 -------------------~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 317 -------------------QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred -------------------hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 4455555666665 67777888888888888888887 67888888888888888888644
Q ss_pred ccCCccccCCCCCCEEEcCC
Q 001036 1045 GKIPRQLVDLNTLAIFIVAY 1064 (1180)
Q Consensus 1045 g~ip~~l~~l~~L~~l~ls~ 1064 (1180)
-..|.--..-+.|+..|+.+
T Consensus 376 VMPPKP~da~~~lefYNIDF 395 (1255)
T KOG0444|consen 376 VMPPKPNDARKKLEFYNIDF 395 (1255)
T ss_pred cCCCCcchhhhcceeeecce
Confidence 23333222234566655544
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=6.5e-32 Score=306.78 Aligned_cols=486 Identities=26% Similarity=0.320 Sum_probs=332.3
Q ss_pred CCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcEEe
Q 001036 467 HLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFD 546 (1180)
Q Consensus 467 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l~ 546 (1180)
.++.|++..|.+....-+...+.-+|+.|++++|.+. .+ |..+..+.+|+.|.++.|.+. .+| ....++.+|+++.
T Consensus 22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~f-p~~it~l~~L~~ln~s~n~i~-~vp-~s~~~~~~l~~ln 97 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SF-PIQITLLSHLRQLNLSRNYIR-SVP-SSCSNMRNLQYLN 97 (1081)
T ss_pred HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cC-CchhhhHHHHhhcccchhhHh-hCc-hhhhhhhcchhhe
Confidence 3666777777544322233444555788888877775 55 566777777778888777765 333 3355666777777
Q ss_pred cCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccCC
Q 001036 547 AKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVND 626 (1180)
Q Consensus 547 l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n 626 (1180)
+.+|.+.. .|..+..+.+|++|+++.|++. .+|.. ...++.++.+..++|
T Consensus 98 L~~n~l~~----------------------------lP~~~~~lknl~~LdlS~N~f~-~~Pl~-i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 98 LKNNRLQS----------------------------LPASISELKNLQYLDLSFNHFG-PIPLV-IEVLTAEEELAASNN 147 (1081)
T ss_pred eccchhhc----------------------------CchhHHhhhcccccccchhccC-CCchh-HHhhhHHHHHhhhcc
Confidence 77666542 3445555666667777776653 45554 346667777777777
Q ss_pred cccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccC
Q 001036 627 SLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIP 706 (1180)
Q Consensus 627 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip 706 (1180)
...... +. ..++.+++..|.+.+.++.++.. +.. .|++.+|.+. . ..+.++..|+.+....|+++ .+.
T Consensus 148 ~~~~~l----g~-~~ik~~~l~~n~l~~~~~~~i~~-l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls-~l~ 215 (1081)
T KOG0618|consen 148 EKIQRL----GQ-TSIKKLDLRLNVLGGSFLIDIYN-LTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLS-ELE 215 (1081)
T ss_pred hhhhhh----cc-ccchhhhhhhhhcccchhcchhh-hhe--eeecccchhh-h--hhhhhccchhhhhhhhcccc-eEE
Confidence 222111 11 12677788888887777776654 334 6888888877 2 24566778888888888886 333
Q ss_pred hhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCC
Q 001036 707 DHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLK 786 (1180)
Q Consensus 707 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 786 (1180)
. ..++|+.|+.++|.++...+. ..-.+|+++++++|++++ +|++++.+.+|+.++..+|+++ .+|..+...+
T Consensus 216 ~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~ 287 (1081)
T KOG0618|consen 216 I----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRIT 287 (1081)
T ss_pred e----cCcchheeeeccCcceeeccc--cccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhh
Confidence 2 357888888888888733322 234578888888888884 5588888889999999888885 7888888888
Q ss_pred CCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcC---CCcccEEEcCCcccccccCcccccCCCCCcEE
Q 001036 787 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY---PLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTL 863 (1180)
Q Consensus 787 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 863 (1180)
+|+.|.+..|.+. .+|....+++.|+.|+|..|++. ++|+.+. ..++..++.+.|.+.. .|...=...+.|+.|
T Consensus 288 ~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~L 364 (1081)
T KOG0618|consen 288 SLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQEL 364 (1081)
T ss_pred hHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHH
Confidence 8888888888887 56777777888899999998886 5665432 2346667777776652 333223345678888
Q ss_pred ECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCC
Q 001036 864 DLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDK 943 (1180)
Q Consensus 864 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~ 943 (1180)
.+.+|.++...-..+.+..+|++|+|++|++.......+.++..|+.|+||+|+++. +|.+..++.
T Consensus 365 ylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~~~------------- 430 (1081)
T KOG0618|consen 365 YLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT-LPDTVANLG------------- 430 (1081)
T ss_pred HHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh-hhHHHHhhh-------------
Confidence 888888887776777888888888888888875555567788888888888888874 445554433
Q ss_pred CCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccc
Q 001036 944 PFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI 1023 (1180)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~ 1023 (1180)
.|++|..-+|++. ..| ++.++++|+++|+|.|+|+...
T Consensus 431 ----------------------------------------~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~ 468 (1081)
T KOG0618|consen 431 ----------------------------------------RLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVT 468 (1081)
T ss_pred ----------------------------------------hhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhh
Confidence 5777777888887 566 7888888888888888887543
Q ss_pred cccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCC
Q 001036 1024 PLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 1065 (1180)
Q Consensus 1024 p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N 1065 (1180)
-..-..-++|+.|||++|.=.-..-..|..+..+..+++.-|
T Consensus 469 l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 469 LPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 322222378888888888733234445556666666666666
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-30 Score=296.79 Aligned_cols=474 Identities=27% Similarity=0.329 Sum_probs=362.5
Q ss_pred cChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhh
Q 001036 583 FPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD 662 (1180)
Q Consensus 583 ~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~ 662 (1180)
+|..+..-..+..+++.+|-+... |-.+.+.+-+|+.|++++|.+. .+|.++..+..|+.|.++.|.+. ..|.....
T Consensus 13 ip~~i~~~~~~~~ln~~~N~~l~~-pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~ 89 (1081)
T KOG0618|consen 13 IPEQILNNEALQILNLRRNSLLSR-PLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSN 89 (1081)
T ss_pred cchhhccHHHHHhhhccccccccC-chHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhh
Confidence 344433333467777777766543 3444556667999999999876 46777888999999999999998 88877665
Q ss_pred cCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCce
Q 001036 663 ILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 742 (1180)
Q Consensus 663 ~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 742 (1180)
+.+|+++.|.+|.+. ..|..+..+.+|+.|++++|++. .+|..+. .++.++.+..++|......+ ... ++.
T Consensus 90 -~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~-~lt~~~~~~~s~N~~~~~lg----~~~-ik~ 160 (1081)
T KOG0618|consen 90 -MRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIE-VLTAEEELAASNNEKIQRLG----QTS-IKK 160 (1081)
T ss_pred -hhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHH-hhhHHHHHhhhcchhhhhhc----ccc-chh
Confidence 899999999999888 78999999999999999999997 9998885 78899999999993322222 222 889
Q ss_pred eeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcc
Q 001036 743 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI 822 (1180)
Q Consensus 743 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 822 (1180)
+++..|.+.+.++..+..++. .|+|+.|.+. -..+.++.+|+.+....|++... -..-++|+.|+.++|.+
T Consensus 161 ~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l 231 (1081)
T KOG0618|consen 161 LDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPL 231 (1081)
T ss_pred hhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcc
Confidence 999999999998888887777 8999999986 23467788999999999988632 12457899999999999
Q ss_pred cccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccc
Q 001036 823 SGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQL 902 (1180)
Q Consensus 823 ~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 902 (1180)
+ ..-..+.+.++++++++.|++++ +|. ....+.+|+.++..+|.++ .+|..+...++|+.|....|.+. -+|...
T Consensus 232 ~-~~~~~p~p~nl~~~dis~n~l~~-lp~-wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~l 306 (1081)
T KOG0618|consen 232 T-TLDVHPVPLNLQYLDISHNNLSN-LPE-WIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFL 306 (1081)
T ss_pred e-eeccccccccceeeecchhhhhc-chH-HHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcc
Confidence 8 56666778899999999999984 775 8999999999999999996 78888889999999999999998 688888
Q ss_pred cCCCCCCEEECcCCcCcccCCCCccCccc-ccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccch--hcccc
Q 001036 903 CRLNQLQLLDLSDNNLHGLIPSCFDNTTL-HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA--YAYQG 979 (1180)
Q Consensus 903 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 979 (1180)
..+++|+.|||..|++...++..|.-... ....+..... .+...+ .+.........+.+..+... ..+..
T Consensus 307 e~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~-l~~lp~------~~e~~~~~Lq~LylanN~Ltd~c~p~l 379 (1081)
T KOG0618|consen 307 EGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK-LSTLPS------YEENNHAALQELYLANNHLTDSCFPVL 379 (1081)
T ss_pred cccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcc-cccccc------ccchhhHHHHHHHHhcCcccccchhhh
Confidence 89999999999999998666544433221 1111111110 000000 01111122333333333322 12223
Q ss_pred hhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCE
Q 001036 980 RVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAI 1059 (1180)
Q Consensus 980 ~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~ 1059 (1180)
.....|+.|+|++|+|.......+.++..|+.|+||+|+++ .+|.++.++..|++|...+|++. ..| .+..++.|+.
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~ 456 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKV 456 (1081)
T ss_pred ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceE
Confidence 44668999999999998444445899999999999999999 88999999999999999999998 677 8999999999
Q ss_pred EEcCCCcCccc-CCCcccccccCCccccCCCCCCC
Q 001036 1060 FIVAYNNLSGK-IPEWTAQFATFNKSSYDGNPFLC 1093 (1180)
Q Consensus 1060 l~ls~N~l~g~-ip~~~~~~~~~~~~~~~~N~~lc 1093 (1180)
+|+|.|+|+-. +|. .....++...++.||+++-
T Consensus 457 lDlS~N~L~~~~l~~-~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 457 LDLSCNNLSEVTLPE-ALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred Eecccchhhhhhhhh-hCCCcccceeeccCCcccc
Confidence 99999999853 333 3334678888999999753
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=2.7e-26 Score=236.85 Aligned_cols=294 Identities=21% Similarity=0.172 Sum_probs=198.2
Q ss_pred CcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccC-cccccc
Q 001036 626 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN-NKLTGE 704 (1180)
Q Consensus 626 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~-n~l~~~ 704 (1180)
|.-.|....+-.-......++|..|.|+ .||+..|..+++|+.||||+|+|+.+-|++|.++.+|..|-+.+ |+|+ .
T Consensus 53 Cr~~GL~eVP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~ 130 (498)
T KOG4237|consen 53 CRGKGLTEVPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-D 130 (498)
T ss_pred ccCCCcccCcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-h
Confidence 3334433444445567778889999998 89988888899999999999999999999999998887777666 8888 8
Q ss_pred cChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccC
Q 001036 705 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGN 784 (1180)
Q Consensus 705 ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 784 (1180)
+|...|.++.+|+.|.+.-|++.....+.|..+++|..|.+.+|.+..+-..+|..+.+++.+.+..|.+.. ..+
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic-----dCn 205 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC-----DCN 205 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc-----ccc
Confidence 999998899999999999999988888889999999999999998886555688888888888888887431 122
Q ss_pred CCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCC--cccEEEcCCcccccccCcccccCCCCCcE
Q 001036 785 LKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPL--SIKQVHLSKNMLHGQLKEGTFFNCSSLVT 862 (1180)
Q Consensus 785 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~--~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 862 (1180)
++.+..... ..|..+++.....-..+.++++...-+..|... ++..-..+.+...+.-|...|..+++|+.
T Consensus 206 L~wla~~~a-------~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ 278 (498)
T KOG4237|consen 206 LPWLADDLA-------MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRK 278 (498)
T ss_pred cchhhhHHh-------hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceE
Confidence 222221111 112223333333333333333332222222111 11111112222334455556777777777
Q ss_pred EECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCccccc
Q 001036 863 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE 933 (1180)
Q Consensus 863 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 933 (1180)
|+|++|+++++-+.+|.++..+++|.|..|++.......|.++..|+.|+|.+|+|+..-|..|..+..+.
T Consensus 279 lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 279 LNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred eccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 77777777777777777777777777777777766666777777777777777777777777776654433
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=4.7e-22 Score=257.48 Aligned_cols=339 Identities=22% Similarity=0.274 Sum_probs=197.0
Q ss_pred CCCCCCCccEEEccCCc------ccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChh
Q 001036 635 PIHSHKRLRFLDVSNNN------FQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDH 708 (1180)
Q Consensus 635 ~~~~~~~L~~L~l~~n~------l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~ 708 (1180)
.|..+.+|+.|.+..+. +...+|..+....++|+.|.+.++.+. .+|..| ...+|+.|++++|++. .+|..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~ 629 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG 629 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence 34556677777665442 222455554443345777777666665 455555 3566777777777665 55554
Q ss_pred hhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCC
Q 001036 709 LAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGL 788 (1180)
Q Consensus 709 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 788 (1180)
. ..+++|+.|+++++...+.+|. +..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|
T Consensus 630 ~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL 706 (1153)
T PLN03210 630 V-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL 706 (1153)
T ss_pred c-ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence 4 3566677777766554444443 5566677777777666555666666666777777776665444566544 56667
Q ss_pred CeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccc---c---ccCcccccCCCCCcE
Q 001036 789 QHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLH---G---QLKEGTFFNCSSLVT 862 (1180)
Q Consensus 789 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~---~---~~~~~~~~~~~~L~~ 862 (1180)
+.|++++|...+.+|.. .++|+.|++++|.+. .+|..+...+|+.|.+.++... + .++...+...++|+.
T Consensus 707 ~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred CEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence 77777666554444432 345666666666654 4555544455666655543211 0 011112223456666
Q ss_pred EECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCC
Q 001036 863 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPD 942 (1180)
Q Consensus 863 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~ 942 (1180)
|++++|...+.+|.+++++++|+.|++++|...+.+|..+ ++++|+.|++++|..-..+|..
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~----------------- 844 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI----------------- 844 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-----------------
Confidence 6666666555666666666666666666654444555544 5666666666665433222211
Q ss_pred CCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCcc-ccccc
Q 001036 943 KPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSH-NNLTG 1021 (1180)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~-N~l~g 1021 (1180)
.++++.|+|++|.++ .+|..+..+++|++|+|++ |+++
T Consensus 845 ---------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~- 883 (1153)
T PLN03210 845 ---------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ- 883 (1153)
T ss_pred ---------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-
Confidence 124666777777776 5666677777777777766 3444
Q ss_pred cccccccCCCCCCEEECcCCc
Q 001036 1022 TIPLTFSNLRHIESLDLSYNK 1042 (1180)
Q Consensus 1022 ~~p~~~~~l~~L~~L~Ls~N~ 1042 (1180)
.+|..+..+++|+.++++++.
T Consensus 884 ~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 884 RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccCcccccccCCCeeecCCCc
Confidence 466666667777777776663
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=4.1e-22 Score=258.03 Aligned_cols=339 Identities=22% Similarity=0.274 Sum_probs=222.2
Q ss_pred ChhhhhcCCCCcEEEccCCc------CCccCCccccCcc-cCcEEEccCcccccccChhhhhcCCCCCEEEccCCccccc
Q 001036 657 PVEIGDILPSLVYFNISMNA------LDGSIPSSFGNVI-FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGH 729 (1180)
Q Consensus 657 p~~~~~~l~~L~~L~ls~n~------l~~~~p~~~~~l~-~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~ 729 (1180)
....+..+++|+.|.+..+. +...+|..|..++ .|+.|++.++.+. .+|..+ ...+|+.|++++|++. .
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-c
Confidence 33444457777777775543 2234555565553 5777777777776 677665 3577777777777776 3
Q ss_pred ccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCC
Q 001036 730 IFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRL 809 (1180)
Q Consensus 730 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 809 (1180)
++..+..+++|+.|+|++|...+.+| .++.+++|++|++++|.....+|..++++++|+.|++++|...+.+|..+ ++
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 55666777777777777766555555 36677777777777776666777777777777777777765555666554 57
Q ss_pred CCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccC-------ccccchhhhcCC
Q 001036 810 DSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYL-------NGSIPDWIDGLS 882 (1180)
Q Consensus 810 ~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l-------~~~~p~~~~~l~ 882 (1180)
++|+.|++++|...+.+|.. ..+++.|++++|.+. .+|. .+ .+++|+.|++.++.. ....|..+...+
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~-~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPS-NL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cccc-cc-cccccccccccccchhhccccccccchhhhhccc
Confidence 77777777777666666643 346777777777764 4554 22 466777777766332 112222333456
Q ss_pred CCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhh
Q 001036 883 QLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKI 962 (1180)
Q Consensus 883 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 962 (1180)
+|+.|++++|...+.+|..++++++|+.|++++|..-+.+|... +
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~---------------------------------- 823 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N---------------------------------- 823 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C----------------------------------
Confidence 77777777777776777777777777777777765444444332 1
Q ss_pred hhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcC-C
Q 001036 963 LEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSY-N 1041 (1180)
Q Consensus 963 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~-N 1041 (1180)
+++|+.|++++|..-..+|.. .++|+.|+|++|.++ .+|.++..+++|+.|+|++ |
T Consensus 824 -------------------L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 824 -------------------LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred -------------------ccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCC
Confidence 235777777776554455543 246777777777777 5677777777777777777 4
Q ss_pred cCcccCCccccCCCCCCEEEcCCC
Q 001036 1042 KLSGKIPRQLVDLNTLAIFIVAYN 1065 (1180)
Q Consensus 1042 ~l~g~ip~~l~~l~~L~~l~ls~N 1065 (1180)
+|+ .+|..+..++.|+.++++++
T Consensus 881 ~L~-~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 881 NLQ-RVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CcC-ccCcccccccCCCeeecCCC
Confidence 555 46667777777777777766
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.6e-21 Score=232.15 Aligned_cols=264 Identities=27% Similarity=0.347 Sum_probs=130.6
Q ss_pred CCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeec
Q 001036 666 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 745 (1180)
Q Consensus 666 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 745 (1180)
.-..|+++.|.++ .+|..+. .+|+.|++++|+++ .+|. ..++|++|++++|+++.. |.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cCc---ccccceeec
Confidence 3456677777666 4555553 25666666666666 4553 134555555555555532 221 234444455
Q ss_pred cCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCccccc
Q 001036 746 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS 825 (1180)
Q Consensus 746 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 825 (1180)
++|.+. .+|.. .++|+.|++++|+++. +|. ..++|+.|++++|++++
T Consensus 270 s~N~L~-------------------------~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~- 316 (788)
T PRK15387 270 FSNPLT-------------------------HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS- 316 (788)
T ss_pred cCCchh-------------------------hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-
Confidence 544444 22221 1234444444444442 222 12345555555555542
Q ss_pred CCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCC
Q 001036 826 LPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL 905 (1180)
Q Consensus 826 ~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 905 (1180)
+|. .+.+|+.|++++|.+.+ +|. + ..+|+.|+|++|+|++ +|.. .++|+.|++++|++++ +|.. .
T Consensus 317 Lp~--lp~~L~~L~Ls~N~L~~-LP~--l--p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~ 381 (788)
T PRK15387 317 LPA--LPSELCKLWAYNNQLTS-LPT--L--PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---P 381 (788)
T ss_pred CCC--CcccccccccccCcccc-ccc--c--ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---c
Confidence 222 12233444444444432 332 1 1356666666666663 3332 2345556666666653 4432 2
Q ss_pred CCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhcccc
Q 001036 906 NQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLL 985 (1180)
Q Consensus 906 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 985 (1180)
.+|+.|++++|+|++ +|... +.|
T Consensus 382 ~~L~~LdLs~N~Lt~-LP~l~--------------------------------------------------------s~L 404 (788)
T PRK15387 382 SGLKELIVSGNRLTS-LPVLP--------------------------------------------------------SEL 404 (788)
T ss_pred cccceEEecCCcccC-CCCcc--------------------------------------------------------cCC
Confidence 345666666666653 22110 135
Q ss_pred ceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccc
Q 001036 986 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQL 1051 (1180)
Q Consensus 986 ~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l 1051 (1180)
+.||+++|+|++ +|... .+|+.|++++|+|+ .+|..++++++|+.|+|++|+|+|.+|..+
T Consensus 405 ~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 405 KELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 556666666653 44332 24555666666665 456666666666666666666666655555
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=8.8e-21 Score=225.81 Aligned_cols=267 Identities=27% Similarity=0.330 Sum_probs=197.7
Q ss_pred CccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEE
Q 001036 641 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLS 720 (1180)
Q Consensus 641 ~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~ 720 (1180)
.-..|+++++.++ .+|..+. ++|+.|++++|+++. +|.. +++|++|++++|+++ .+|.. .++|+.|+
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~ 268 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLT-SLPVL----PPGLLELS 268 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccC-cccCc----ccccceee
Confidence 4568999999998 8998764 589999999999995 5543 578999999999998 77753 47899999
Q ss_pred ccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCC
Q 001036 721 LSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEG 800 (1180)
Q Consensus 721 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 800 (1180)
+++|.++. +|.. .++|+.|++++|+++. +|. ..++|+.|++++|++++ +|.. ..+|+.|++++|++++
T Consensus 269 Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 269 IFSNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS 336 (788)
T ss_pred ccCCchhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc
Confidence 99999984 3432 3568889999998884 454 24678888888888874 4542 2356677777777764
Q ss_pred CCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhc
Q 001036 801 PIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG 880 (1180)
Q Consensus 801 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~ 880 (1180)
+|.. ..+|+.|++++|++++ +| . . .++|+.|++++|++++ +|..
T Consensus 337 -LP~l---p~~Lq~LdLS~N~Ls~-LP-----------------------~-l---p~~L~~L~Ls~N~L~~-LP~l--- 380 (788)
T PRK15387 337 -LPTL---PSGLQELSVSDNQLAS-LP-----------------------T-L---PSELYKLWAYNNRLTS-LPAL--- 380 (788)
T ss_pred -cccc---ccccceEecCCCccCC-CC-----------------------C-C---Ccccceehhhcccccc-Cccc---
Confidence 4421 2466777777777662 33 2 1 1356667777777774 4543
Q ss_pred CCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhh
Q 001036 881 LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEK 960 (1180)
Q Consensus 881 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 960 (1180)
..+|+.|++++|++++ +|.. .++|+.|++++|++++ +|...
T Consensus 381 ~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---------------------------------- 421 (788)
T PRK15387 381 PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---------------------------------- 421 (788)
T ss_pred ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch----------------------------------
Confidence 2467888888888874 5543 3578899999999885 44321
Q ss_pred hhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCC
Q 001036 961 KILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL 1030 (1180)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l 1030 (1180)
..|+.|++++|+|+ .+|..++++++|+.|+|++|.|+|.+|..+..+
T Consensus 422 ----------------------~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 422 ----------------------SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred ----------------------hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 14667999999998 789999999999999999999999999887544
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=2.5e-23 Score=215.06 Aligned_cols=387 Identities=21% Similarity=0.192 Sum_probs=239.0
Q ss_pred CCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccC-CccccccCcccccCCCCCcE
Q 001036 466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSN-NHFRIPVSLEPLFNHSKLKI 544 (1180)
Q Consensus 466 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~l~~l~~L~~ 544 (1180)
+.-++++|..|.|+...|.+|+.+++|+.|||++|.++ .|.+.+|.++++|.+|.+.+ |+++ .++...|.++..|+.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR 144 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence 35678889999998888888999999999999999987 67788899998888887776 6666 677777888777777
Q ss_pred EecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEcc
Q 001036 545 FDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV 624 (1180)
Q Consensus 545 l~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~ 624 (1180)
|.+..|++.. ++...+..++++..|.+.
T Consensus 145 LllNan~i~C----------------------------------------------------ir~~al~dL~~l~lLsly 172 (498)
T KOG4237|consen 145 LLLNANHINC----------------------------------------------------IRQDALRDLPSLSLLSLY 172 (498)
T ss_pred HhcChhhhcc----------------------------------------------------hhHHHHHHhhhcchhccc
Confidence 7666665432 334446788888899999
Q ss_pred CCcccCCCCCCCCCCCCccEEEccCCcccc------------cCChhhhhcCCCCcEEEccCCcCCccCCccccCc-ccC
Q 001036 625 NDSLAGPFRLPIHSHKRLRFLDVSNNNFQG------------HIPVEIGDILPSLVYFNISMNALDGSIPSSFGNV-IFL 691 (1180)
Q Consensus 625 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~------------~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l-~~L 691 (1180)
+|.+...-...+..+..++.+.+..|.+.. ..|...+ +..-..-..+.+.++..+.+..|... .++
T Consensus 173 Dn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets-garc~~p~rl~~~Ri~q~~a~kf~c~~esl 251 (498)
T KOG4237|consen 173 DNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS-GARCVSPYRLYYKRINQEDARKFLCSLESL 251 (498)
T ss_pred chhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc-cceecchHHHHHHHhcccchhhhhhhHHhH
Confidence 998887766778888888888888877431 1111111 12222223333344433333333221 111
Q ss_pred cEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcC
Q 001036 692 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNN 771 (1180)
Q Consensus 692 ~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~ 771 (1180)
..=-.+.+...+.-|..-|..+++|+.|+|++|+++++-+.+|.+...++.|.|..|++..+....|.++..|++|+|.+
T Consensus 252 ~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~ 331 (498)
T KOG4237|consen 252 PSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYD 331 (498)
T ss_pred HHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecC
Confidence 11112223333466666677778888888888888877777788888888888888877766666777777888888888
Q ss_pred CcCCCCCcccccCCCCCCeEEccCCcCCCC-----------------CCccccCCCCCCEEEccCCccccc---CCCCc-
Q 001036 772 NNLSGKIPRWLGNLKGLQHIVMPKNHLEGP-----------------IPVEFCRLDSLQILDISDNNISGS---LPSCF- 830 (1180)
Q Consensus 772 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~~l~~L~~L~l~~n~l~~~---~p~~~- 830 (1180)
|+|+...|.+|..+.+|.+|.+-.|.+.-. .|. -+.-..++.+++++..+... .|+..
T Consensus 332 N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~-Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~ 410 (498)
T KOG4237|consen 332 NQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPR-CQSPGFVRQIPISDVAFGDFRCGGPEELG 410 (498)
T ss_pred CeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCC-CCCCchhccccchhccccccccCCccccC
Confidence 887777777777777777777766654310 000 01112344444444433211 11111
Q ss_pred ------CCC---cc-cEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCc
Q 001036 831 ------YPL---SI-KQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPI 900 (1180)
Q Consensus 831 ------~~~---~L-~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 900 (1180)
.|+ -+ +....|+..+ ..+|.+. -...++|++.+|.++ .+|.. .+.+| .+|+++|++...-..
T Consensus 411 ~~~s~~cP~~c~c~~tVvRcSnk~l-k~lp~~i---P~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~ 482 (498)
T KOG4237|consen 411 CLTSSPCPPPCTCLDTVVRCSNKLL-KLLPRGI---PVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNY 482 (498)
T ss_pred CCCCCCCCCCcchhhhhHhhcccch-hhcCCCC---CchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcc
Confidence 010 01 1112222222 2233311 123456677777776 44544 44556 677777777765566
Q ss_pred cccCCCCCCEEECcCC
Q 001036 901 QLCRLNQLQLLDLSDN 916 (1180)
Q Consensus 901 ~~~~l~~L~~L~Ls~N 916 (1180)
.|.++++|.+|.||+|
T Consensus 483 tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 483 TFSNMTQLSTLILSYN 498 (498)
T ss_pred cccchhhhheeEEecC
Confidence 6777777777777765
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=5.1e-19 Score=212.81 Aligned_cols=203 Identities=26% Similarity=0.387 Sum_probs=105.3
Q ss_pred CCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceee
Q 001036 665 PSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLL 744 (1180)
Q Consensus 665 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 744 (1180)
.+...|+++++.++. +|..+. ..|+.|++++|+++ .+|..++ .+|+.|++++|+++. +|..+. ++|+.|+
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATLP--DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhhh--ccccEEE
Confidence 356678888877773 555443 46777888888777 6776553 467777777777663 343332 3456666
Q ss_pred ccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccc
Q 001036 745 LEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG 824 (1180)
Q Consensus 745 L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 824 (1180)
|++|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|+++
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt- 317 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT- 317 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-
Confidence 6666555 3343332 34555555555554 3444332 244444444444442 222211 23334444444433
Q ss_pred cCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccC
Q 001036 825 SLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR 904 (1180)
Q Consensus 825 ~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 904 (1180)
. +|. .+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+.
T Consensus 318 ----------------------~-LP~-~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp- 366 (754)
T PRK15370 318 ----------------------A-LPE-TL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP- 366 (754)
T ss_pred ----------------------c-CCc-cc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc-
Confidence 1 222 11 1355566666666653 444332 45666666666655 3444332
Q ss_pred CCCCCEEECcCCcCc
Q 001036 905 LNQLQLLDLSDNNLH 919 (1180)
Q Consensus 905 l~~L~~L~Ls~N~l~ 919 (1180)
++|+.|++++|+++
T Consensus 367 -~~L~~LdLs~N~Lt 380 (754)
T PRK15370 367 -PTITTLDVSRNALT 380 (754)
T ss_pred -CCcCEEECCCCcCC
Confidence 45666666666655
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=7.4e-19 Score=211.43 Aligned_cols=220 Identities=26% Similarity=0.406 Sum_probs=104.6
Q ss_pred EEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccC
Q 001036 644 FLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSN 723 (1180)
Q Consensus 644 ~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~ 723 (1180)
.|+++++.++ .+|..+ .+.++.|++++|+++. +|..+. .+|+.|++++|+++ .+|..+. .+|+.|++++
T Consensus 182 ~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~ 250 (754)
T PRK15370 182 ELRLKILGLT-TIPACI---PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMELSI 250 (754)
T ss_pred EEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEECcC
Confidence 4444444444 344332 2345555555555552 333222 24555555555554 4454332 3455555555
Q ss_pred CcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCC
Q 001036 724 NSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP 803 (1180)
Q Consensus 724 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 803 (1180)
|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++. +|
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LP 320 (754)
T ss_pred CccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CC
Confidence 5554 2333332 35566666666655 2444332 35666666666665 3444332 356677777777663 34
Q ss_pred ccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCC
Q 001036 804 VEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 883 (1180)
Q Consensus 804 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~ 883 (1180)
..+ .++|+.|++++|.+++ +|..+ +.+|+.|++++|++. .+|. .+ .++|+.|++++|+++. +|..+. .+
T Consensus 321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l-~~sL~~L~Ls~N~L~-~LP~-~l--p~~L~~LdLs~N~Lt~-LP~~l~--~s 389 (754)
T PRK15370 321 ETL--PPGLKTLEAGENALTS-LPASL-PPELQVLDVSKNQIT-VLPE-TL--PPTITTLDVSRNALTN-LPENLP--AA 389 (754)
T ss_pred ccc--cccceeccccCCcccc-CChhh-cCcccEEECCCCCCC-cCCh-hh--cCCcCEEECCCCcCCC-CCHhHH--HH
Confidence 333 2467777777777663 34322 123333333333332 2222 11 1345555555555542 333332 13
Q ss_pred CCEEecCCCccc
Q 001036 884 LSHLNLAHNNLE 895 (1180)
Q Consensus 884 L~~L~L~~N~l~ 895 (1180)
|+.|++++|++.
T Consensus 390 L~~LdLs~N~L~ 401 (754)
T PRK15370 390 LQIMQASRNNLV 401 (754)
T ss_pred HHHHhhccCCcc
Confidence 444444444444
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=2.4e-18 Score=194.59 Aligned_cols=66 Identities=29% Similarity=0.428 Sum_probs=34.2
Q ss_pred ccCCCCCcEEECcCccCccc----cchhhhcCCCCCEEecCCCccccC----CCccccCCCCCCEEECcCCcCc
Q 001036 854 FFNCSSLVTLDLSYNYLNGS----IPDWIDGLSQLSHLNLAHNNLEGE----VPIQLCRLNQLQLLDLSDNNLH 919 (1180)
Q Consensus 854 ~~~~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~ 919 (1180)
+..+++|+.|++++|.+++. ++..+..+++|+.|++++|.+.+. ++..+..+++|++|++++|+++
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 44455566666666665531 223334445666666666655422 2233444555666666666554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=1.5e-18 Score=196.17 Aligned_cols=218 Identities=25% Similarity=0.251 Sum_probs=116.8
Q ss_pred ccccCCCCCCeEEccCCcCCCCCCccccCCCC---CCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccC
Q 001036 780 RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS---LQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFN 856 (1180)
Q Consensus 780 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 856 (1180)
..+..+++|+.|++++|.+.+..+..+..+.. |++|++++|++++... ..+.. .+..
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~-------------------~~l~~-~l~~ 134 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL-------------------RLLAK-GLKD 134 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH-------------------HHHHH-HHHh
Confidence 34455556666666666655444444433333 6666666666542100 01111 3344
Q ss_pred C-CCCcEEECcCccCcc----ccchhhhcCCCCCEEecCCCccccC----CCccccCCCCCCEEECcCCcCcccCCCCcc
Q 001036 857 C-SSLVTLDLSYNYLNG----SIPDWIDGLSQLSHLNLAHNNLEGE----VPIQLCRLNQLQLLDLSDNNLHGLIPSCFD 927 (1180)
Q Consensus 857 ~-~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 927 (1180)
+ ++|+.|++++|.+++ .++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++.....+.
T Consensus 135 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 214 (319)
T cd00116 135 LPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA 214 (319)
T ss_pred CCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH
Confidence 4 677888888888773 2344566667788888888877742 233445556788888887776633211111
Q ss_pred CcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCcccc---
Q 001036 928 NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIG--- 1004 (1180)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~--- 1004 (1180)
.. ...++.|+.||+++|.+++.....+.
T Consensus 215 ~~-------------------------------------------------~~~~~~L~~L~ls~n~l~~~~~~~l~~~~ 245 (319)
T cd00116 215 ET-------------------------------------------------LASLKSLEVLNLGDNNLTDAGAAALASAL 245 (319)
T ss_pred HH-------------------------------------------------hcccCCCCEEecCCCcCchHHHHHHHHHH
Confidence 00 01123566777777766642222221
Q ss_pred --CCCCCCEEeCcccccc----ccccccccCCCCCCEEECcCCcCccc----CCccccCC-CCCCEEEcCCCc
Q 001036 1005 --NLTRIQTLNLSHNNLT----GTIPLTFSNLRHIESLDLSYNKLSGK----IPRQLVDL-NTLAIFIVAYNN 1066 (1180)
Q Consensus 1005 --~l~~L~~L~Ls~N~l~----g~~p~~~~~l~~L~~L~Ls~N~l~g~----ip~~l~~l-~~L~~l~ls~N~ 1066 (1180)
..+.|+.|++++|.++ +.++..+..+++|+.+|+++|.++.. ....+... +.|+.+++.+|+
T Consensus 246 ~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 246 LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 2356666666666665 22334445556666666666666633 22233333 455556655554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=3.4e-18 Score=156.43 Aligned_cols=163 Identities=31% Similarity=0.502 Sum_probs=130.1
Q ss_pred CcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEE
Q 001036 833 LSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLD 912 (1180)
Q Consensus 833 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 912 (1180)
..++.|.+|+|+++ .+|+ .+..+.+|+.|++++|+++ ..|..+..+++|+.|+++-|++. ..|..|+.++.|++||
T Consensus 33 s~ITrLtLSHNKl~-~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhcccCcee-ecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 34444444444444 4555 6788899999999999998 67888999999999999999997 7899999999999999
Q ss_pred CcCCcCccc-CCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEcc
Q 001036 913 LSDNNLHGL-IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 991 (1180)
Q Consensus 913 Ls~N~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs 991 (1180)
|++|++... .|+-|-. ++.|+.|+|+
T Consensus 109 ltynnl~e~~lpgnff~-----------------------------------------------------m~tlralyl~ 135 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFY-----------------------------------------------------MTTLRALYLG 135 (264)
T ss_pred ccccccccccCCcchhH-----------------------------------------------------HHHHHHHHhc
Confidence 999988743 3433322 3467888899
Q ss_pred CCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCC
Q 001036 992 CNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN 1055 (1180)
Q Consensus 992 ~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~ 1055 (1180)
.|.+. .+|+.++++++|+.|.+..|.+- ..|..++.+++|+.|.+.+|+++ .+|..++++.
T Consensus 136 dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~ 196 (264)
T KOG0617|consen 136 DNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLD 196 (264)
T ss_pred CCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence 99998 78888999999999999999888 78888999999999999999988 7777766643
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.5e-17 Score=152.21 Aligned_cols=167 Identities=31% Similarity=0.494 Sum_probs=150.1
Q ss_pred ccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCccccc
Q 001036 854 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE 933 (1180)
Q Consensus 854 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 933 (1180)
+.++.+.+.|.||+|+++ .+|..+..+.+|+.|++++|++. ..|.++..++.|+.|+++-|++. ..|..|+.+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p--- 102 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP--- 102 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc---
Confidence 556788899999999999 66778999999999999999998 78999999999999999999987 5677777643
Q ss_pred ccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccC-CCCccccCCCCCCEE
Q 001036 934 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG-HIPPQIGNLTRIQTL 1012 (1180)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~~p~~~~~l~~L~~L 1012 (1180)
.|..|||++|++.. ..|..|..++.|+-|
T Consensus 103 --------------------------------------------------~levldltynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 103 --------------------------------------------------ALEVLDLTYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred --------------------------------------------------hhhhhhccccccccccCCcchhHHHHHHHH
Confidence 68889999999975 579999999999999
Q ss_pred eCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccccc
Q 001036 1013 NLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFA 1079 (1180)
Q Consensus 1013 ~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~ 1079 (1180)
.|++|.+. .+|..++++++|+.|.+..|.+- ..|..++.++.|+.|.+.+|.++-..|+ .++++
T Consensus 133 yl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l~ 196 (264)
T KOG0617|consen 133 YLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE-LANLD 196 (264)
T ss_pred HhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh-hhhhh
Confidence 99999999 89999999999999999999998 8999999999999999999999977776 65554
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.57 E-value=4.3e-15 Score=179.26 Aligned_cols=118 Identities=36% Similarity=0.618 Sum_probs=106.8
Q ss_pred ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036 984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus 984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
.++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCccccc-ccCCccccCCCCCCCCCCC-CCCC
Q 001036 1064 YNNLSGKIPEWTAQF-ATFNKSSYDGNPFLCGLPL-PICR 1101 (1180)
Q Consensus 1064 ~N~l~g~ip~~~~~~-~~~~~~~~~~N~~lc~~~l-~~c~ 1101 (1180)
+|+++|.+|..+... ......++.+|+++|+.|. ..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999865442 3445677999999999764 3564
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.34 E-value=2.8e-12 Score=154.97 Aligned_cols=113 Identities=33% Similarity=0.528 Sum_probs=101.1
Q ss_pred CCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccce
Q 001036 908 LQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 987 (1180)
Q Consensus 908 L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 987 (1180)
++.|+|++|.++|.+|..+.+++ .|+.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~-----------------------------------------------------~L~~ 446 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLR-----------------------------------------------------HLQS 446 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCC-----------------------------------------------------CCCE
Confidence 67788999999988888776644 7999
Q ss_pred EEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCC-CCCCEEEcCCCc
Q 001036 988 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL-NTLAIFIVAYNN 1066 (1180)
Q Consensus 988 LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l-~~L~~l~ls~N~ 1066 (1180)
|+|++|+++|.+|..++.+++|+.|||++|+++|.+|+.++++++|+.|||++|+++|.+|..+..+ ..+..+++++|.
T Consensus 447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999998874 467889999997
Q ss_pred CcccCCC
Q 001036 1067 LSGKIPE 1073 (1180)
Q Consensus 1067 l~g~ip~ 1073 (1180)
..+.+|.
T Consensus 527 ~lc~~p~ 533 (623)
T PLN03150 527 GLCGIPG 533 (623)
T ss_pred cccCCCC
Confidence 6655554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.25 E-value=1.9e-13 Score=149.05 Aligned_cols=173 Identities=33% Similarity=0.493 Sum_probs=137.5
Q ss_pred ccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECc
Q 001036 835 IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 914 (1180)
Q Consensus 835 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 914 (1180)
....+++.|++. ++|. .+..+-.|+.+.|..|.+. .+|..+.++..|.+|+|+.|+++ ..|..++.|+ |+.|-++
T Consensus 77 t~~aDlsrNR~~-elp~-~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPE-EACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred hhhhhccccccc-cCch-HHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 345677777775 5666 6667777777778777776 67777888888888888888877 6677777665 7778888
Q ss_pred CCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCc
Q 001036 915 DNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK 994 (1180)
Q Consensus 915 ~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~ 994 (1180)
+|+++. +|..++. +..|..||.|.|+
T Consensus 152 NNkl~~-lp~~ig~-----------------------------------------------------~~tl~~ld~s~ne 177 (722)
T KOG0532|consen 152 NNKLTS-LPEEIGL-----------------------------------------------------LPTLAHLDVSKNE 177 (722)
T ss_pred cCcccc-CCccccc-----------------------------------------------------chhHHHhhhhhhh
Confidence 888763 3444331 3367889999999
Q ss_pred ccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCccc
Q 001036 995 LVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGK 1070 (1180)
Q Consensus 995 l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ 1070 (1180)
+. .+|..++++.+|+.|++..|++. ..|+.+..| .|..||+|+|+++ .||-.|.+|..|++|-|.+|.|..+
T Consensus 178 i~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 178 IQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence 98 78999999999999999999999 677777755 5889999999999 8999999999999999999999854
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.20 E-value=4.8e-12 Score=130.83 Aligned_cols=262 Identities=22% Similarity=0.229 Sum_probs=144.1
Q ss_pred cCCCCCCEEEccCcccCCCchhcccccccCCCCCcEEecCCCc---CCCCccccc-------cCCCCCcEEEccCccccC
Q 001036 80 TPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNA---FNNNVLSSL-------ARLSSLRSLYLSDNRLEG 149 (1180)
Q Consensus 80 ~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~---i~~~lp~~l-------~~l~~L~~L~L~~~~~~~ 149 (1180)
-.+..++.++||+|.+...........+.+.+.||..+++.-. ...++|+.+ ..+++|++||||+|.+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 4456677777777776544443444556667777777777642 223445443 346788888888887754
Q ss_pred ccCh---hhccCCCCCCeEEccCCCCCchhhhcccCCcceecccCCCcccccccccccCCCCccEEeCCCCcCCCccccc
Q 001036 150 SIDV---KELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQ 226 (1180)
Q Consensus 150 ~~~~---~~l~~L~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~ 226 (1180)
..+. ..+.++..|++|.|.+|.+...........|..+. ......+-+.|+++...+|++.+.....
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~----------~~kk~~~~~~Lrv~i~~rNrlen~ga~~ 176 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA----------VNKKAASKPKLRVFICGRNRLENGGATA 176 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH----------HHhccCCCcceEEEEeeccccccccHHH
Confidence 3222 24567888888888888876554332222222222 0123445567777777777776665555
Q ss_pred ccccccCCCCccEEEcCCCcCCch----hhHHhhccCCCceeecCCccccCccchhhhcccCCCcEEeCCCCccccchhh
Q 001036 227 GLERLSRLSKLKKLDLRGNLCNNS----ILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVS 302 (1180)
Q Consensus 227 ~l~~l~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 302 (1180)
..+.++.++.|+.+.++.|.+... ....+..+++|+.|+|.+|.++.... ..+.
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs----------------------~~La 234 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS----------------------VALA 234 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH----------------------HHHH
Confidence 555566667777777777765432 23344445555555555554432211 1122
Q ss_pred ccccCCCCccEEEcCCCccCcch--hhhhhc-CCCCCCceecccCCccccccc--chhhhcCCCCccEEEcCCCCC
Q 001036 303 RGYRGLRKLKSLDLSGVGIRDGN--KLLQSM-GSFPSLNTLHLESNNFTATLT--TTQELHNFTNLEYLTLDDSSL 373 (1180)
Q Consensus 303 ~~l~~l~~L~~L~L~~~~~~~~~--~~~~~l-~~l~~L~~L~L~~~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~ 373 (1180)
..+...++|+.|+++.|.+.+.. .+...+ ...|+|+.|.+.+|.+..... ........+.|+.|++++|.+
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 33444444444444444443311 112222 235666666666665543221 112234467777777777777
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.13 E-value=9.2e-11 Score=136.34 Aligned_cols=198 Identities=35% Similarity=0.525 Sum_probs=113.4
Q ss_pred eEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCC-CCCcEEECcCc
Q 001036 790 HIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC-SSLVTLDLSYN 868 (1180)
Q Consensus 790 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~L~~n 868 (1180)
.++...|.+... ...+..++.++.|++.+|.++. +|. ..... ++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~-i~~------------------------~~~~~~~nL~~L~l~~N 150 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITD-IPP------------------------LIGLLKSNLKELDLSDN 150 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCccccc-Ccc------------------------ccccchhhccccccccc
Confidence 466666665322 2233344666777777777662 222 22223 25666666666
Q ss_pred cCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccc
Q 001036 869 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTS 948 (1180)
Q Consensus 869 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (1180)
++. .+|..++.+++|+.|++++|++. .+|...+.+++|+.|++++|+++...+. ..
T Consensus 151 ~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~--------------------- 206 (394)
T COG4886 151 KIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPE-IE--------------------- 206 (394)
T ss_pred chh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchh-hh---------------------
Confidence 665 44455666666666666666665 4455444566666666666666533221 00
Q ss_pred cccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCcccccccccccccc
Q 001036 949 FSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS 1028 (1180)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~ 1028 (1180)
.+..|.++++++|.+. .++..++++..+..|.+++|++. ..|..++
T Consensus 207 --------------------------------~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~ 252 (394)
T COG4886 207 --------------------------------LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIG 252 (394)
T ss_pred --------------------------------hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhc
Confidence 0123556666666433 45556666666666666666666 3356666
Q ss_pred CCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCC
Q 001036 1029 NLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus 1029 ~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
.+.+++.|++++|+++ .++. ++.+..++.|++++|.++..+|.
T Consensus 253 ~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 253 NLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence 6666777777777666 3333 66666677777777766655554
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=2e-10 Score=133.44 Aligned_cols=65 Identities=37% Similarity=0.527 Sum_probs=27.5
Q ss_pred ccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCccc
Q 001036 854 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 921 (1180)
Q Consensus 854 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 921 (1180)
+.++.++..+.+.+|++. ..+..++.+++++.|++++|.++. ++. +..+.+++.||+++|.++..
T Consensus 228 ~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 228 LSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred hhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCcccccc
Confidence 334444444444444443 123444444444444444444442 221 44444444444444444433
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.04 E-value=1e-11 Score=135.87 Aligned_cols=175 Identities=30% Similarity=0.454 Sum_probs=148.4
Q ss_pred CCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCC
Q 001036 638 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE 717 (1180)
Q Consensus 638 ~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~ 717 (1180)
.++.....|++.|++. .+|..+.. +..|+.+.++.|.+. .+|.++.++..|++++++.|+++ .+|..++ .--|+
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLk 146 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLK 146 (722)
T ss_pred cccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcce
Confidence 4556677889999998 88888876 778888999999888 68888999999999999999998 8888874 45689
Q ss_pred EEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCc
Q 001036 718 FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 797 (1180)
Q Consensus 718 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 797 (1180)
.|.+++|+++ .+|+.++..+.|..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|+.+.. -.|..||++.|+
T Consensus 147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNk 222 (722)
T KOG0532|consen 147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNK 222 (722)
T ss_pred eEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCc
Confidence 9999999987 56777888889999999999987 56778888999999999999987 67777774 458889999999
Q ss_pred CCCCCCccccCCCCCCEEEccCCccc
Q 001036 798 LEGPIPVEFCRLDSLQILDISDNNIS 823 (1180)
Q Consensus 798 l~~~~~~~~~~l~~L~~L~l~~n~l~ 823 (1180)
+. .+|..|.+|+.|++|.|.+|.+.
T Consensus 223 is-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 223 IS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ee-ecchhhhhhhhheeeeeccCCCC
Confidence 87 78999999999999999999987
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.03 E-value=7.3e-11 Score=122.26 Aligned_cols=223 Identities=26% Similarity=0.275 Sum_probs=149.3
Q ss_pred CceEEEEeccccCCccc-ccccccccCCCCCCEEEccCcccCCCchhc-------ccccccCCCCCcEEecCCCcCCCCc
Q 001036 56 GRVIGLYLSETYSGEYW-YLNASLFTPFQQLESLDLSWNNIAGCAENE-------GLEGLSRLNNLKMLDLSGNAFNNNV 127 (1180)
Q Consensus 56 ~~v~~L~L~~~~~~~~~-~~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~-------~~~~l~~l~~L~~L~Ls~~~i~~~l 127 (1180)
..+++++|++++++..- ..-+..+.+-+.||..++|+. ++|.+..+ ..+.+-.+++|++||||.|.+....
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 35899999999765331 123456677889999999975 33433322 2344567789999999999987655
Q ss_pred ccc----ccCCCCCcEEEccCccccCccC------------hhhccCCCCCCeEEccCCCCCchhhhcccCCcceecccC
Q 001036 128 LSS----LARLSSLRSLYLSDNRLEGSID------------VKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSG 191 (1180)
Q Consensus 128 p~~----l~~l~~L~~L~L~~~~~~~~~~------------~~~l~~L~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~ 191 (1180)
+.. +.+++.|++|.|.+|.+..... .+.+++-++||++..++|.+...+..
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~------------- 175 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT------------- 175 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH-------------
Confidence 554 4568999999999998752211 11234455788888887776554322
Q ss_pred CCcccccccccccCCCCccEEeCCCCcCCCcccccccccccCCCCccEEEcCCCcCCch----hhHHhhccCCCceeecC
Q 001036 192 TGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNS----ILSSVARLSSLTSLHLS 267 (1180)
Q Consensus 192 ~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~L~ 267 (1180)
.....+...+.|+.+.++.|.+.........+++..+++|+.|+|+.|-++.. ....++.+++|++|++.
T Consensus 176 ------~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 176 ------ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ------HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 12234666788888998888877655555567788999999999999987754 44455556778888888
Q ss_pred CccccCccchh---hh-cccCCCcEEeCCCCcccc
Q 001036 268 HNILQGSIDAK---EF-DSLSNLEELDINDNEIDN 298 (1180)
Q Consensus 268 ~~~~~~~~~~~---~l-~~l~~L~~L~L~~n~~~~ 298 (1180)
+|.+...-... .+ ...|+|+.|.+.+|.++.
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence 88775432211 11 234566666666666544
No 31
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.02 E-value=8.7e-11 Score=124.28 Aligned_cols=291 Identities=22% Similarity=0.208 Sum_probs=167.5
Q ss_pred CccEEeCCCCcCCCcccccccccccCCCCccEEEcCCCc-CCchhhHHhhc-cCCCceeecCCccccCccchh-hhcccC
Q 001036 208 NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNL-CNNSILSSVAR-LSSLTSLHLSHNILQGSIDAK-EFDSLS 284 (1180)
Q Consensus 208 ~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~~-~~~~~~~~l~~-l~~L~~L~L~~~~~~~~~~~~-~l~~l~ 284 (1180)
-|++|.++++.-.+...- -.....++++++|.+.++. +++.....+++ +.+|+++++..|...+..... .-..++
T Consensus 139 ~lk~LSlrG~r~v~~ssl--rt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSL--RTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccCCcchh--hHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 455666666543332211 1124456667777666663 44444444444 577777777776544443333 335677
Q ss_pred CCcEEeCCCCc-cccchhhccccCCCCccEEEcCCCccCcchhhhhhcCCCCCCceecccCCcccccccchhhhcCCCCc
Q 001036 285 NLEELDINDNE-IDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNL 363 (1180)
Q Consensus 285 ~L~~L~L~~n~-~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L 363 (1180)
+|+++++++|. ++.-.+..-.+++..++.+.+.||.-...+.+...-+.++-+.++++..|...++......-..+..|
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 88888887774 33334444566777777777777766666666666677778888888888766665544445567888
Q ss_pred cEEEcCCCC-CchhhHhhHhhhCCCCCEEEcCCCcccccccCCCC-CccccceeeccchhhhccccchhhhhcccCCcce
Q 001036 364 EYLTLDDSS-LHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGF-PHFKSLEHLDMRFARIALNTSFLQIIGESMPSLK 441 (1180)
Q Consensus 364 ~~L~L~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~ 441 (1180)
++|..++|. +.......++...++|+.+.++.|+..+......+ .+++.|+.+++..|....+.. +......+|.++
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t-L~sls~~C~~lr 375 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT-LASLSRNCPRLR 375 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh-HhhhccCCchhc
Confidence 888888876 44444566666678888888888874333222222 356677777777666554432 222334566666
Q ss_pred eeeccCcccCCC-CccccccccCCCCCCcEEEccCCCc-ccccchhhcCCCCccEEEccccc
Q 001036 442 YLSLSGSTLGTN-SSRILDQGLCPLAHLQELYIDNNDL-RGSLPWCLANTTSLRILDVSFNQ 501 (1180)
Q Consensus 442 ~L~L~~~~~~~~-~~~~~~~~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~ 501 (1180)
.+.++.|....+ +...+...-+....|+.+.+++++. +...-..+..+++|+.+++..++
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 666665543222 1222222334455566666666642 23333344555555555555554
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.1e-10 Score=122.03 Aligned_cols=115 Identities=24% Similarity=0.349 Sum_probs=83.9
Q ss_pred ccCCCcEEeCCCCccccchhhccccCCCCccEEEcCCCccCcchhhhhhcCCCCCCceecccCCcccccccchhhhcCCC
Q 001036 282 SLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFT 361 (1180)
Q Consensus 282 ~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~ 361 (1180)
++.+|+...|.++.+......+..+.|++++.|+|+.|-+..+..+...+..+|+|+.|.|+.|.+....... .-..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~-~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN-TTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc-chhhhh
Confidence 3455556666665554444334566778888888888877777777888888999999999988876544322 223678
Q ss_pred CccEEEcCCCCCchhhHhhHhhhCCCCCEEEcCCCc
Q 001036 362 NLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCE 397 (1180)
Q Consensus 362 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 397 (1180)
+|+.|.++.|.+.......+...+|+|+.|++..|.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence 899999999998866666666668999999998885
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=3.6e-10 Score=120.33 Aligned_cols=140 Identities=27% Similarity=0.319 Sum_probs=68.9
Q ss_pred CCCccEEEcCCCcCCchhhH-HhhccCCCceeecCCccccCccchhhhcccCCCcEEeCCCCccccchhhccccCCCCcc
Q 001036 234 LSKLKKLDLRGNLCNNSILS-SVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLK 312 (1180)
Q Consensus 234 l~~L~~L~L~~~~~~~~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~ 312 (1180)
+++|+.|.++.|.++..... .+..+|+|+.|++..|... .+.......+..|++|+|++|.+.+.+.......++.|+
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 34444444444444432222 2233455555555554311 111223334455556666665555554444555556666
Q ss_pred EEEcCCCccCcchhh----hhhcCCCCCCceecccCCcccccccchhhhcCCCCccEEEcCCCCCch
Q 001036 313 SLDLSGVGIRDGNKL----LQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHI 375 (1180)
Q Consensus 313 ~L~L~~~~~~~~~~~----~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 375 (1180)
.|.++.+++.+.... ......+++|++|.+..|++... +....+..+++|+.|.+..+.+..
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w-~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW-RSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccccc-cccchhhccchhhhhhcccccccc
Confidence 666666555442211 11124566777777777665322 223345566677777766666554
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.88 E-value=2.8e-09 Score=131.33 Aligned_cols=106 Identities=27% Similarity=0.278 Sum_probs=75.3
Q ss_pred CceEEEEeccccCCcccccccccccCCCCCCEEEccCcc--cCCCchhcccccccCCCCCcEEecCCCcCCCCccccccC
Q 001036 56 GRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNN--IAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR 133 (1180)
Q Consensus 56 ~~v~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~--~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~lp~~l~~ 133 (1180)
..+++..+.++..... +. -..++.|++|-+.++. +...+. +.|..+++|++|||++|.-.+.+|.+|+.
T Consensus 523 ~~~rr~s~~~~~~~~~----~~-~~~~~~L~tLll~~n~~~l~~is~----~ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHI----AG-SSENPKLRTLLLQRNSDWLLEISG----EFFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred hheeEEEEeccchhhc----cC-CCCCCccceEEEeecchhhhhcCH----HHHhhCcceEEEECCCCCccCcCChHHhh
Confidence 3566666665533211 00 1234468888888875 333332 44778899999999988766679999999
Q ss_pred CCCCcEEEccCccccCccChhhccCCCCCCeEEccCCCC
Q 001036 134 LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKI 172 (1180)
Q Consensus 134 l~~L~~L~L~~~~~~~~~~~~~l~~L~~L~~L~L~~~~l 172 (1180)
|.+||+|+++++.+. .+|. .+++|++|.+|++..+.-
T Consensus 594 Li~LryL~L~~t~I~-~LP~-~l~~Lk~L~~Lnl~~~~~ 630 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGIS-HLPS-GLGNLKKLIYLNLEVTGR 630 (889)
T ss_pred hhhhhcccccCCCcc-ccch-HHHHHHhhheeccccccc
Confidence 999999999999887 3454 899999999999987754
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.81 E-value=3.1e-09 Score=104.25 Aligned_cols=129 Identities=33% Similarity=0.422 Sum_probs=35.6
Q ss_pred cCCCCCcEEecCCCcCCCCcccccc-CCCCCcEEEccCccccCccChhhccCCCCCCeEEccCCCCCchhhhcccCCcce
Q 001036 108 SRLNNLKMLDLSGNAFNNNVLSSLA-RLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKS 186 (1180)
Q Consensus 108 ~~l~~L~~L~Ls~~~i~~~lp~~l~-~l~~L~~L~L~~~~~~~~~~~~~l~~L~~L~~L~L~~~~l~~~~~~~~~~~L~~ 186 (1180)
.+..++|+|+|.+|.|.. .+.++ .+.+|++||+++|.+... +.+..+++|++|++++|.++.+...
T Consensus 16 ~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~i~~~-------- 82 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISSISEG-------- 82 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S-CHH--------
T ss_pred cccccccccccccccccc--ccchhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCccccc--------
Confidence 344456666666666654 23444 356666666666666532 2455666666666666666554211
Q ss_pred ecccCCCcccccccccccCCCCccEEeCCCCcCCCcccccccccccCCCCccEEEcCCCcCCch---hhHHhhccCCCce
Q 001036 187 LGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNS---ILSSVARLSSLTS 263 (1180)
Q Consensus 187 L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~---~~~~l~~l~~L~~ 263 (1180)
....+++|++|++++|++..... +..++.+++|+.|++.+|.+... ....+..+|+|+.
T Consensus 83 ---------------l~~~lp~L~~L~L~~N~I~~l~~---l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~ 144 (175)
T PF14580_consen 83 ---------------LDKNLPNLQELYLSNNKISDLNE---LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKV 144 (175)
T ss_dssp ---------------HHHH-TT--EEE-TTS---SCCC---CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SE
T ss_pred ---------------hHHhCCcCCEEECcCCcCCChHH---hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhhe
Confidence 00123444444444444433211 22355555666666666555432 3345556677777
Q ss_pred eecC
Q 001036 264 LHLS 267 (1180)
Q Consensus 264 L~L~ 267 (1180)
||-.
T Consensus 145 LD~~ 148 (175)
T PF14580_consen 145 LDGQ 148 (175)
T ss_dssp ETTE
T ss_pred eCCE
Confidence 6654
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.78 E-value=1.4e-09 Score=109.57 Aligned_cols=59 Identities=39% Similarity=0.456 Sum_probs=36.2
Q ss_pred CCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCc
Q 001036 858 SSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 919 (1180)
Q Consensus 858 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 919 (1180)
.-|+.+|||+|.|+ .+.++..-.+.++.|+++.|.+... +.+..+++|+.||||+|.++
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH
Confidence 45666777777666 4555566666667777777766522 22555666666666666554
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.77 E-value=3.7e-09 Score=130.34 Aligned_cols=107 Identities=25% Similarity=0.283 Sum_probs=84.9
Q ss_pred ceEEEEeccccCCcccccccccccCCCCCCEEEccCcc-cCCCchhcccccccCCCCCcEEecCCCcCCCCccccccCCC
Q 001036 57 RVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNN-IAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLS 135 (1180)
Q Consensus 57 ~v~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~-~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~lp~~l~~l~ 135 (1180)
.++.|-+.++.. ....++..+|..++.||+|||++|. +..+| +.++.|-+||||+++++.+.. +|.++++|+
T Consensus 546 ~L~tLll~~n~~-~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP-----~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk 618 (889)
T KOG4658|consen 546 KLRTLLLQRNSD-WLLEISGEFFRSLPLLRVLDLSGNSSLSKLP-----SSIGELVHLRYLDLSDTGISH-LPSGLGNLK 618 (889)
T ss_pred ccceEEEeecch-hhhhcCHHHHhhCcceEEEECCCCCccCcCC-----hHHhhhhhhhcccccCCCccc-cchHHHHHH
Confidence 566776666532 1223456679999999999999874 44444 679999999999999999985 999999999
Q ss_pred CCcEEEccCccccCccChhhccCCCCCCeEEccCCC
Q 001036 136 SLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNK 171 (1180)
Q Consensus 136 ~L~~L~L~~~~~~~~~~~~~l~~L~~L~~L~L~~~~ 171 (1180)
.|++||+..+.....+ +..+..+++||+|.+....
T Consensus 619 ~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhheeccccccccccc-cchhhhcccccEEEeeccc
Confidence 9999999999866554 4466679999999998765
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.77 E-value=8.7e-09 Score=101.15 Aligned_cols=112 Identities=29% Similarity=0.441 Sum_probs=31.0
Q ss_pred ccCCCCccEEeCCCCcCCCccccccccccc-CCCCccEEEcCCCcCCchhhHHhhccCCCceeecCCccccCccchhhhc
Q 001036 203 FDSFNNLEVLDMSGNEIDNLVVPQGLERLS-RLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFD 281 (1180)
Q Consensus 203 l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~-~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~ 281 (1180)
+.+...+++|+|++|.+.... .++ .+.+|+.|++++|.+... +.+..++.|++|++++|.+.. +......
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie------~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~ 85 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE------NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDK 85 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHH
T ss_pred ccccccccccccccccccccc------chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHH
Confidence 334445666666666665432 144 356666777777665543 234455666666666666652 2222223
Q ss_pred ccCCCcEEeCCCCccccchhhccccCCCCccEEEcCCCccCc
Q 001036 282 SLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRD 323 (1180)
Q Consensus 282 ~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~ 323 (1180)
.+++|++|++++|++.+......++.+++|++|++.+|++..
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 466666666666666665545555556666666666665543
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.76 E-value=3.9e-09 Score=106.49 Aligned_cols=224 Identities=23% Similarity=0.209 Sum_probs=103.4
Q ss_pred CCCCcEEecCCCc--------CCCCccccccCCCCCcEEEccCccccCccChhhccCCCCCCeEEccCCCCCchhhhccc
Q 001036 110 LNNLKMLDLSGNA--------FNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGL 181 (1180)
Q Consensus 110 l~~L~~L~Ls~~~--------i~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~L~~L~~L~L~~~~l~~~~~~~~~ 181 (1180)
++.|.+|..++.. +...+|-.+.-+++|+.+.++.|.-..... ....-+.|+++.+....++..+...-.
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~--~~~~kptl~t~~v~~s~~~~~~~l~pe 258 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVD--IELLKPTLQTICVHNTTIQDVPSLLPE 258 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheec--eeecCchhheeeeecccccccccccch
Confidence 4556666666542 112234445556788888888876432211 112235677777776655443321111
Q ss_pred CCcceecccCCCcccccccccccCCCCccEEeCCCCcCCCcccccccccccCCCCccEEEcCCCcCCchhhHHhhccCCC
Q 001036 182 SKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSL 261 (1180)
Q Consensus 182 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L 261 (1180)
..+....-..-..........+.--+.|+++||++|.++.... ...-.++++.|++++|.+..... ++.+++|
T Consensus 259 ~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDE-----SvKL~Pkir~L~lS~N~i~~v~n--La~L~~L 331 (490)
T KOG1259|consen 259 TILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDE-----SVKLAPKLRRLILSQNRIRTVQN--LAELPQL 331 (490)
T ss_pred hhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhh-----hhhhccceeEEeccccceeeehh--hhhcccc
Confidence 1111111000000011111223334456666777666654322 24445666666666665443322 4444555
Q ss_pred ceeecCCccccCccchhhhcccCCCcEEeCCCCccccchhhccccCCCCccEEEcCCCccCcchhhhhhcCCCCCCceec
Q 001036 262 TSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLH 341 (1180)
Q Consensus 262 ~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~ 341 (1180)
+.|++++|.+. ... .+-..+.+++.|.+++|.+.+ ...++.+-+|..|+
T Consensus 332 ~~LDLS~N~Ls-------------------------~~~--Gwh~KLGNIKtL~La~N~iE~----LSGL~KLYSLvnLD 380 (490)
T KOG1259|consen 332 QLLDLSGNLLA-------------------------ECV--GWHLKLGNIKTLKLAQNKIET----LSGLRKLYSLVNLD 380 (490)
T ss_pred eEeecccchhH-------------------------hhh--hhHhhhcCEeeeehhhhhHhh----hhhhHhhhhheecc
Confidence 55555554443 321 222334444555555544433 22334444555555
Q ss_pred ccCCcccccccchhhhcCCCCccEEEcCCCCCc
Q 001036 342 LESNNFTATLTTTQELHNFTNLEYLTLDDSSLH 374 (1180)
Q Consensus 342 L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 374 (1180)
+++|++..... ...++++|.|+.+.+.+|++.
T Consensus 381 l~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 381 LSSNQIEELDE-VNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ccccchhhHHH-hcccccccHHHHHhhcCCCcc
Confidence 55555432211 124555666666666666554
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.75 E-value=5.8e-09 Score=83.94 Aligned_cols=60 Identities=50% Similarity=0.630 Sum_probs=40.4
Q ss_pred ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcC
Q 001036 984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 1043 (1180)
Q Consensus 984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 1043 (1180)
+|+.|++++|+|+...+..|.++++|++|++++|+++...|..|.++++|+.|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 466677777777655555666677777777777777666666667777777777776654
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.71 E-value=2.9e-09 Score=112.97 Aligned_cols=310 Identities=17% Similarity=0.127 Sum_probs=199.9
Q ss_pred CcceecccCCCcccccccc-cccCCCCccEEeCCCCcCCCcccccccccccCCCCccEEEcCCC-cCCchhhHHhhc-cC
Q 001036 183 KLKSLGLSGTGFKGTFDVR-EFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN-LCNNSILSSVAR-LS 259 (1180)
Q Consensus 183 ~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~-~~~~~~~~~l~~-l~ 259 (1180)
.|+.+.+.++.-.+..... ....++++++|++.+|.... .......-..+++|++|++..| .+++.....++. ++
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iT--d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKIT--DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceecc--HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 3444444444333222222 34568888888888886222 1221222345788999998885 466666665544 89
Q ss_pred CCceeecCCccccCccch-hhhcccCCCcEEeCCCCccccch-hhccccCCCCccEEEcCCCccCcchhhhhhcCCCCCC
Q 001036 260 SLTSLHLSHNILQGSIDA-KEFDSLSNLEELDINDNEIDNVE-VSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSL 337 (1180)
Q Consensus 260 ~L~~L~L~~~~~~~~~~~-~~l~~l~~L~~L~L~~n~~~~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L 337 (1180)
+|+++++++|.....-.. ....+++.++.+.+.+|.-.+.. +...-..+..+.++++..|....+..+...-..+..|
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 999999999875433222 33456777888877776433332 2223345666777887788766666666667778899
Q ss_pred ceecccCCcccccccchhhhcCCCCccEEEcCCCC-CchhhHhhHhhhCCCCCEEEcCCCcccccc-cCCCCCcccccee
Q 001036 338 NTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSS-LHISLLQSIGSIFPSLKNLSMSGCEVNGVL-SGQGFPHFKSLEH 415 (1180)
Q Consensus 338 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~ 415 (1180)
+.|+.++|...+..+...-..++++|+.+.++.|+ ++.-.+..++...+.|+.+++.+|...... -...-.+++.|+.
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 99999988877766655556778999999999988 444445666666788999999888743322 1123457899999
Q ss_pred eccchhhhccccch--hhhhcccCCcceeeeccCcccCCCCccccccccCCCCCCcEEEccCCC-cccc-cchhhcCCCC
Q 001036 416 LDMRFARIALNTSF--LQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNND-LRGS-LPWCLANTTS 491 (1180)
Q Consensus 416 L~l~~~~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~ 491 (1180)
+.++.|....+... ..........++.+.+++++...+.. ...+..+++|+.+++..|. ++.. +...-..+++
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~---Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~ 453 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT---LEHLSICRNLERIELIDCQDVTKEAISRFATHLPN 453 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH---HHHHhhCcccceeeeechhhhhhhhhHHHHhhCcc
Confidence 99998887766522 23333557788889999887754322 2245678899999999884 3322 2233345666
Q ss_pred ccEEEc
Q 001036 492 LRILDV 497 (1180)
Q Consensus 492 L~~L~l 497 (1180)
++...+
T Consensus 454 i~v~a~ 459 (483)
T KOG4341|consen 454 IKVHAY 459 (483)
T ss_pred ceehhh
Confidence 665433
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.70 E-value=1e-08 Score=82.52 Aligned_cols=61 Identities=39% Similarity=0.572 Sum_probs=57.5
Q ss_pred CCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcC
Q 001036 1007 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNL 1067 (1180)
Q Consensus 1007 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l 1067 (1180)
++|++|++++|+++...++.|.++++|+.||+++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999988788999999999999999999988889999999999999999985
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.3e-09 Score=109.93 Aligned_cols=109 Identities=29% Similarity=0.281 Sum_probs=67.1
Q ss_pred CccEEeCCCCcCCCcccccccccccCCCCccEEEcCCCcCCchhhHHhhccCCCceeecCCccccCccc-hhhhcccCCC
Q 001036 208 NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSID-AKEFDSLSNL 286 (1180)
Q Consensus 208 ~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~l~~l~~L 286 (1180)
.|+++||+...++.... ...+.+|++|+.|.+.++++++.....+++-.+|+.|+++.|.-..+.. .-.+.+++.|
T Consensus 186 Rlq~lDLS~s~it~stl---~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTL---HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHHH---HHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 57777777766543322 2236778888888888888888877788888888888887765332222 2345667777
Q ss_pred cEEeCCCCccccchhhccccC-CCCccEEEcCCC
Q 001036 287 EELDINDNEIDNVEVSRGYRG-LRKLKSLDLSGV 319 (1180)
Q Consensus 287 ~~L~L~~n~~~~~~~~~~l~~-l~~L~~L~L~~~ 319 (1180)
..|++++|......+...+.. -++|+.|+|+|+
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence 777777776544332222222 245556666655
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.64 E-value=4.9e-09 Score=121.67 Aligned_cols=226 Identities=29% Similarity=0.307 Sum_probs=122.0
Q ss_pred CCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccE
Q 001036 758 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQ 837 (1180)
Q Consensus 758 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~ 837 (1180)
+..+++|+.|++.+|++. .+...+..+++|++|++++|.++... .+..++.|+.|++++|.++.
T Consensus 91 l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~------------- 154 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD------------- 154 (414)
T ss_pred cccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchh-------------
Confidence 344455555555555554 22222444555555555555554332 22334445555555555541
Q ss_pred EEcCCcccccccCcccccCCCCCcEEECcCccCccccc-hhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCC
Q 001036 838 VHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDN 916 (1180)
Q Consensus 838 L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 916 (1180)
+. .+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+.. ...+..+..+..+++..|
T Consensus 155 -----------~~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 155 -----------IS--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDN 218 (414)
T ss_pred -----------cc--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccc
Confidence 11 23446667777777777764433 2 4566677777777776652 223333444444466666
Q ss_pred cCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhcc--ccceEEccCCc
Q 001036 917 NLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLS--LLAGLDLSCNK 994 (1180)
Q Consensus 917 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~LdLs~N~ 994 (1180)
.++-.-+... +. .|+.+++++|.
T Consensus 219 ~i~~~~~l~~-------------------------------------------------------~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 219 KISKLEGLNE-------------------------------------------------------LVMLHLRELYLSGNR 243 (414)
T ss_pred cceeccCccc-------------------------------------------------------chhHHHHHHhcccCc
Confidence 6553211000 00 26677777777
Q ss_pred ccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCccc---CCcc-ccCCCCCCEEEcCCCcCccc
Q 001036 995 LVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK---IPRQ-LVDLNTLAIFIVAYNNLSGK 1070 (1180)
Q Consensus 995 l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~---ip~~-l~~l~~L~~l~ls~N~l~g~ 1070 (1180)
+. .++..+..+..+..|++++|++...-. +.....+..+.++.|++... .... ......+....+.+|.....
T Consensus 244 i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 244 IS-RSPEGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred cc-cccccccccccccccchhhcccccccc--ccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence 76 444566677777788888877774432 33445666677777776521 1111 45566777777777777665
Q ss_pred CCC
Q 001036 1071 IPE 1073 (1180)
Q Consensus 1071 ip~ 1073 (1180)
.+.
T Consensus 321 ~~~ 323 (414)
T KOG0531|consen 321 SSL 323 (414)
T ss_pred ccc
Confidence 543
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=5.9e-09 Score=105.39 Aligned_cols=87 Identities=22% Similarity=0.229 Sum_probs=47.2
Q ss_pred CccEEEcCCCcCCch-hhHHhhccCCCceeecCCccccCccchhhhcccCCCcEEeCCCC-ccccchhhccccCCCCccE
Q 001036 236 KLKKLDLRGNLCNNS-ILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDN-EIDNVEVSRGYRGLRKLKS 313 (1180)
Q Consensus 236 ~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L~~n-~~~~~~~~~~l~~l~~L~~ 313 (1180)
.|+++|++...++.. ....++.+.+|+.|.+++..+...+ ...++...+|+.|+++.| .+++..+.-.+..|..|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I-~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPI-VNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHH-HHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 466666666655543 3344555666666666666655333 244555556666666554 3344444444555555555
Q ss_pred EEcCCCccCc
Q 001036 314 LDLSGVGIRD 323 (1180)
Q Consensus 314 L~L~~~~~~~ 323 (1180)
|+|++|....
T Consensus 265 LNlsWc~l~~ 274 (419)
T KOG2120|consen 265 LNLSWCFLFT 274 (419)
T ss_pred cCchHhhccc
Confidence 5555554443
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.53 E-value=1.8e-08 Score=100.62 Aligned_cols=261 Identities=21% Similarity=0.193 Sum_probs=154.3
Q ss_pred CCCCCEEEccCcccCCCchhcccccccCCCCCcEEecCCCcC---CCCcc-------ccccCCCCCcEEEccCccccCcc
Q 001036 82 FQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAF---NNNVL-------SSLARLSSLRSLYLSDNRLEGSI 151 (1180)
Q Consensus 82 l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i---~~~lp-------~~l~~l~~L~~L~L~~~~~~~~~ 151 (1180)
+..+..+|||+|.|...........+.+-++|+..+++.-.. .+.++ ..+.+|++|+..+||+|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 566777777777776655544455566667888888876432 22333 34567889999999998886554
Q ss_pred Ch---hhccCCCCCCeEEccCCCCCchhhhcccCCcceecccCCCcccccccccccCCCCccEEeCCCCcCCCccccccc
Q 001036 152 DV---KELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGL 228 (1180)
Q Consensus 152 ~~---~~l~~L~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l 228 (1180)
++ ..|++-+.|.||.+++|.+..+......+.|..|.. .....+.+.|++.....|++.........
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~----------nKKaa~kp~Le~vicgrNRlengs~~~~a 178 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAY----------NKKAADKPKLEVVICGRNRLENGSKELSA 178 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHH----------HhhhccCCCceEEEeccchhccCcHHHHH
Confidence 43 346778889999999887765543332222222211 12345677888888888888776655544
Q ss_pred ccccCCCCccEEEcCCCcCCchhhH-----HhhccCCCceeecCCccccCcc---chhhhcccCCCcEEeCCCCccccch
Q 001036 229 ERLSRLSKLKKLDLRGNLCNNSILS-----SVARLSSLTSLHLSHNILQGSI---DAKEFDSLSNLEELDINDNEIDNVE 300 (1180)
Q Consensus 229 ~~l~~l~~L~~L~L~~~~~~~~~~~-----~l~~l~~L~~L~L~~~~~~~~~---~~~~l~~l~~L~~L~L~~n~~~~~~ 300 (1180)
..+.....|+++.+..|.+...... .+..+.+|+.|++.+|.++..- -...+..++.|+.|.+.+|-+...+
T Consensus 179 ~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G 258 (388)
T COG5238 179 ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEG 258 (388)
T ss_pred HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcccc
Confidence 4566667888888888876654322 2233466666666666554221 1233444555666666665554433
Q ss_pred hhccccCCCCccEEEcCCCccCcchhhhhhc--CCCCCCceecccCCcccccccch-----hhhcCCCCccEEEcCCCCC
Q 001036 301 VSRGYRGLRKLKSLDLSGVGIRDGNKLLQSM--GSFPSLNTLHLESNNFTATLTTT-----QELHNFTNLEYLTLDDSSL 373 (1180)
Q Consensus 301 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l--~~l~~L~~L~L~~~~~~~~~~~~-----~~~~~l~~L~~L~L~~~~~ 373 (1180)
... +...+ ...|+|..|...+|...+..... ..-.++|-|..|.+.+|.+
T Consensus 259 ~~~-----------------------v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~ 315 (388)
T COG5238 259 VKS-----------------------VLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI 315 (388)
T ss_pred HHH-----------------------HHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence 222 22222 13566666666666554332211 1123567777777777776
Q ss_pred ch
Q 001036 374 HI 375 (1180)
Q Consensus 374 ~~ 375 (1180)
..
T Consensus 316 ~E 317 (388)
T COG5238 316 KE 317 (388)
T ss_pred hh
Confidence 53
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.43 E-value=2.9e-08 Score=115.34 Aligned_cols=130 Identities=32% Similarity=0.396 Sum_probs=72.8
Q ss_pred CCCCCCEEEccCcccCCCchhcccccccCCCCCcEEecCCCcCCCCccccccCCCCCcEEEccCccccCccChhhccCCC
Q 001036 81 PFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELDSLR 160 (1180)
Q Consensus 81 ~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~L~ 160 (1180)
.+..+..+++..+.+.... ..++.+++|++|++.+|.+.. +...+..+.+|++|++++|.|+.. ..+..++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~-----~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i---~~l~~l~ 140 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKIL-----NHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL---EGLSTLT 140 (414)
T ss_pred HhHhHHhhccchhhhhhhh-----cccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc---cchhhcc
Confidence 3455555556666555411 235666677777777777665 222266667777777777776542 2455666
Q ss_pred CCCeEEccCCCCCchhhhcccCCcceecccCCCcccccccccccCCCCccEEeCCCCcCC
Q 001036 161 DLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEID 220 (1180)
Q Consensus 161 ~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~ 220 (1180)
.|+.|++++|.+..+.....+..|+.+++++|.+....... ...+.+++.+++.+|.+.
T Consensus 141 ~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 141 LLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred chhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 67777777777666554444555555555555544322211 344555555555555444
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=1.8e-07 Score=94.78 Aligned_cols=211 Identities=18% Similarity=0.266 Sum_probs=105.0
Q ss_pred CCcEEecCCCcCCCCc-ccccc-CCCCCcEEEccCccccCccChh-hccCCCCCCeEEccCCCCCchhhhcccCCcceec
Q 001036 112 NLKMLDLSGNAFNNNV-LSSLA-RLSSLRSLYLSDNRLEGSIDVK-ELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLG 188 (1180)
Q Consensus 112 ~L~~L~Ls~~~i~~~l-p~~l~-~l~~L~~L~L~~~~~~~~~~~~-~l~~L~~L~~L~L~~~~l~~~~~~~~~~~L~~L~ 188 (1180)
.+..|.+.++.|.... ...|+ .+++++.+||.+|.++.-.... .+.+++.|+.|+++.|++...+...-
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-------- 117 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-------- 117 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--------
Confidence 4445555555554321 22233 2566777777777665332221 23566777777777766654332210
Q ss_pred ccCCCcccccccccccCCCCccEEeCCCCcCCCcccccccccccCCCCccEEEcCCCcCCch--hhHHhhc-cCCCceee
Q 001036 189 LSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNS--ILSSVAR-LSSLTSLH 265 (1180)
Q Consensus 189 l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~--~~~~l~~-l~~L~~L~ 265 (1180)
....+|++|.|.+..+....... .+..++.++.|+++.|..... ....... -+.+++|+
T Consensus 118 ---------------~p~~nl~~lVLNgT~L~w~~~~s---~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh 179 (418)
T KOG2982|consen 118 ---------------LPLKNLRVLVLNGTGLSWTQSTS---SLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLH 179 (418)
T ss_pred ---------------ccccceEEEEEcCCCCChhhhhh---hhhcchhhhhhhhccchhhhhccccccccccchhhhhhh
Confidence 22334444444444433222111 134444555555554421110 0011111 12344444
Q ss_pred cCCccccCccchh-hhcccCCCcEEeCCCCccccchhhccccCCCCccEEEcCCCccCcchhhhhhcCCCCCCceecccC
Q 001036 266 LSHNILQGSIDAK-EFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLES 344 (1180)
Q Consensus 266 L~~~~~~~~~~~~-~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~ 344 (1180)
...|......... .-.-+|++..+.+..|++.+....+....++.+--|.|+.+++.++.+ ...+..++.|..|.+.+
T Consensus 180 ~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswas-vD~Ln~f~~l~dlRv~~ 258 (418)
T KOG2982|consen 180 QLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWAS-VDALNGFPQLVDLRVSE 258 (418)
T ss_pred cCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHH-HHHHcCCchhheeeccC
Confidence 4444322111111 112356777777777777776666677777777777777777665433 35566677777777776
Q ss_pred Ccccc
Q 001036 345 NNFTA 349 (1180)
Q Consensus 345 ~~~~~ 349 (1180)
+++..
T Consensus 259 ~Pl~d 263 (418)
T KOG2982|consen 259 NPLSD 263 (418)
T ss_pred Ccccc
Confidence 66543
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.24 E-value=3.2e-07 Score=91.82 Aligned_cols=185 Identities=21% Similarity=0.175 Sum_probs=103.4
Q ss_pred cccCCCCccEEeCCCCcCCCcccccccccccCCCCccEEEcCCCcCCchhhHHhhc-cCCCceeecCCccccCccchhhh
Q 001036 202 EFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVAR-LSSLTSLHLSHNILQGSIDAKEF 280 (1180)
Q Consensus 202 ~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~l~~-l~~L~~L~L~~~~~~~~~~~~~l 280 (1180)
.+.+|++|+.++||.|.+....++...+.+++.+.|++|.+++|.+.......+++ +..| ......
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l-------------a~nKKa 153 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL-------------AYNKKA 153 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH-------------HHHhhh
Confidence 45566677777777766665555554455666666677777666544332222221 0000 001223
Q ss_pred cccCCCcEEeCCCCccccchhh---ccccCCCCccEEEcCCCccCcch--h-hhhhcCCCCCCceecccCCcccccc--c
Q 001036 281 DSLSNLEELDINDNEIDNVEVS---RGYRGLRKLKSLDLSGVGIRDGN--K-LLQSMGSFPSLNTLHLESNNFTATL--T 352 (1180)
Q Consensus 281 ~~l~~L~~L~L~~n~~~~~~~~---~~l~~l~~L~~L~L~~~~~~~~~--~-~~~~l~~l~~L~~L~L~~~~~~~~~--~ 352 (1180)
+.-|.|+......|++...+.. ..++...+|+.+.+..|+|.... . ....+..+.+|+.|+|.+|.++..- .
T Consensus 154 a~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~ 233 (388)
T COG5238 154 ADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY 233 (388)
T ss_pred ccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH
Confidence 3456777777777776554422 24566678888888888877531 1 1223445777888888877665322 1
Q ss_pred chhhhcCCCCccEEEcCCCCCchhhHhhHhh-----hCCCCCEEEcCCCccc
Q 001036 353 TTQELHNFTNLEYLTLDDSSLHISLLQSIGS-----IFPSLKNLSMSGCEVN 399 (1180)
Q Consensus 353 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~ 399 (1180)
....+...+.|++|.+.+|-+.......+.. ..|+|..|....+...
T Consensus 234 La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 234 LADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred HHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 2233445566777777777665443333221 2466666666666543
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.11 E-value=1e-07 Score=85.27 Aligned_cols=58 Identities=24% Similarity=0.428 Sum_probs=30.5
Q ss_pred cceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCc
Q 001036 985 LAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044 (1180)
Q Consensus 985 L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 1044 (1180)
++.++|++|+|+ .+|.++..++.|+.||++.|.|. ..|..|..|.++-.||...|.+.
T Consensus 79 ~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 79 ATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 444555555555 45555555555555555555555 44444444555555555555544
No 51
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.10 E-value=3.3e-06 Score=61.73 Aligned_cols=34 Identities=35% Similarity=0.788 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhcCCC-CCCC-----CC--CCCcccceeEec
Q 001036 19 DHERFALLRLKHFFTD-PYDK-----GA--TDCCQWEGVECS 52 (1180)
Q Consensus 19 ~~~~~~ll~~k~~~~~-~~~~-----~~--~~~c~w~gv~c~ 52 (1180)
+.|++||++||+++.+ |.+. .. ++||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 6899999999999994 5343 22 799999999995
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=8.6e-07 Score=90.07 Aligned_cols=87 Identities=28% Similarity=0.328 Sum_probs=41.2
Q ss_pred CCCccEEeCCCCcCCCcccccccccccCCCCccEEEcCCCcCCchhhHHhhccCCCceeecCCccccCccchhhhcccCC
Q 001036 206 FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSN 285 (1180)
Q Consensus 206 l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~ 285 (1180)
++.++.+||.+|.+++.... ..-+.++|.|+.|+++.|.+.......=....+|+.|-|.+..+.-.-....+..+|.
T Consensus 70 ~~~v~elDL~~N~iSdWseI--~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEI--GAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhhhhhcccchhccHHHH--HHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 45566666666666543221 1224556666666666665443221111334455555555544432222233444555
Q ss_pred CcEEeCCCC
Q 001036 286 LEELDINDN 294 (1180)
Q Consensus 286 L~~L~L~~n 294 (1180)
+++|+++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 555555554
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.03 E-value=2e-07 Score=105.53 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=7.6
Q ss_pred CCCCCCccEEEccCCcc
Q 001036 636 IHSHKRLRFLDVSNNNF 652 (1180)
Q Consensus 636 ~~~~~~L~~L~l~~n~l 652 (1180)
+..+.+|+.|.+.++.+
T Consensus 105 ifpF~sLr~LElrg~~L 121 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDL 121 (1096)
T ss_pred eccccceeeEEecCcch
Confidence 33444444444444443
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.98 E-value=1.7e-07 Score=106.14 Aligned_cols=90 Identities=26% Similarity=0.311 Sum_probs=68.2
Q ss_pred ccccCCCCCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccC
Q 001036 459 DQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFN 538 (1180)
Q Consensus 459 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~ 538 (1180)
..++.-++.++.|+|++|+++... .+..++.|++|||++|.+. .+|.....++. |+.|.+++|.++. ...+.+
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t---L~gie~ 252 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT---LRGIEN 252 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh---hhhHHh
Confidence 335666788999999999987543 6888999999999999987 66555555665 9999999998762 233567
Q ss_pred CCCCcEEecCCcccccc
Q 001036 539 HSKLKIFDAKNNEINGE 555 (1180)
Q Consensus 539 l~~L~~l~l~~n~l~~~ 555 (1180)
+.+|+.||+++|-+.+.
T Consensus 253 LksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEH 269 (1096)
T ss_pred hhhhhccchhHhhhhcc
Confidence 78888888888876543
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.89 E-value=7.7e-06 Score=98.80 Aligned_cols=143 Identities=30% Similarity=0.399 Sum_probs=90.6
Q ss_pred CCCcEEecCCCc-CCCCccccccC-CCCCcEEEccCccccCccChhhccCCCCCCeEEccCCCCCchhhhcccCCcceec
Q 001036 111 NNLKMLDLSGNA-FNNNVLSSLAR-LSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLG 188 (1180)
Q Consensus 111 ~~L~~L~Ls~~~-i~~~lp~~l~~-l~~L~~L~L~~~~~~~~~~~~~l~~L~~L~~L~L~~~~l~~~~~~~~~~~L~~L~ 188 (1180)
.+||+||++|.. +...-|..++. ||+|++|.+++-.+...--.....++++|+.||++++.++.....+.+++|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 578888888864 34445556665 7888888888876643322234567888888898888888776666667777776
Q ss_pred ccCCCcccccccccccCCCCccEEeCCCCcCCCcc--cccccccccCCCCccEEEcCCCcCCchhhH
Q 001036 189 LSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLV--VPQGLERLSRLSKLKKLDLRGNLCNNSILS 253 (1180)
Q Consensus 189 l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~--~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~ 253 (1180)
+.+-.+........+-++++|+.||+|........ ...-++.-..+|+|+.||.++..++....+
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 66666665555556667777777777766543332 111122233456666666666655544333
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=2.3e-05 Score=57.28 Aligned_cols=36 Identities=42% Similarity=0.699 Sum_probs=17.6
Q ss_pred CCCEEeCccccccccccccccCCCCCCEEECcCCcCc
Q 001036 1008 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044 (1180)
Q Consensus 1008 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 1044 (1180)
+|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3455555555555 34444555555555555555554
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.73 E-value=1.6e-06 Score=77.81 Aligned_cols=132 Identities=24% Similarity=0.316 Sum_probs=72.8
Q ss_pred CcEEECcCCcCCCCCccccc---CCCCCCeEEccCCcCCCCCCcccc-CCCCCCEEEccCCcccccCCCCcCCCcccEEE
Q 001036 764 LKGLYLNNNNLSGKIPRWLG---NLKGLQHIVMPKNHLEGPIPVEFC-RLDSLQILDISDNNISGSLPSCFYPLSIKQVH 839 (1180)
Q Consensus 764 L~~L~l~~n~l~~~~p~~~~---~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~ 839 (1180)
+..++|++|.+. .+++... ....|+..++++|.+.. +|..|. ..+..+.|++++|.++
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis---------------- 90 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS---------------- 90 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh----------------
Confidence 445556666553 3443332 23344445666665553 233332 3345555555555554
Q ss_pred cCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCc
Q 001036 840 LSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 919 (1180)
Q Consensus 840 l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 919 (1180)
.+|. .+..++.|+.|+++.|.+. ..|..+..+.++-.|+..+|.+. .+|..+..-+..-..++.++++.
T Consensus 91 --------dvPe-E~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~ 159 (177)
T KOG4579|consen 91 --------DVPE-ELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLG 159 (177)
T ss_pred --------hchH-HHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCccc
Confidence 3555 4666777777777777776 45666666777777777777765 44444333333334455666666
Q ss_pred ccCCC
Q 001036 920 GLIPS 924 (1180)
Q Consensus 920 ~~~p~ 924 (1180)
+.-+.
T Consensus 160 ~~~~~ 164 (177)
T KOG4579|consen 160 DETKK 164 (177)
T ss_pred ccCcc
Confidence 55443
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.64 E-value=3.4e-05 Score=56.42 Aligned_cols=37 Identities=43% Similarity=0.742 Sum_probs=32.6
Q ss_pred ccceEEccCCcccCCCCccccCCCCCCEEeCccccccc
Q 001036 984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTG 1021 (1180)
Q Consensus 984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g 1021 (1180)
+|++|++++|+|+ .+|++++++++|++|++++|+|+.
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 6899999999999 678889999999999999999993
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.58 E-value=0.00017 Score=80.02 Aligned_cols=57 Identities=16% Similarity=0.293 Sum_probs=29.9
Q ss_pred CCCCEEeCccccccccccccccCCCCCCEEECcCCc------CcccCCccccCCCCCCEEEcCCCcC
Q 001036 1007 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK------LSGKIPRQLVDLNTLAIFIVAYNNL 1067 (1180)
Q Consensus 1007 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~------l~g~ip~~l~~l~~L~~l~ls~N~l 1067 (1180)
.+|++|++++|... ..|..+. .+|+.|++++|. -.+.+|+.+ .+....++.++.+.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f 218 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDVF 218 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccCHHHh
Confidence 46777777776655 3444333 467777776663 123455555 444444444444433
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.55 E-value=8.8e-05 Score=89.82 Aligned_cols=136 Identities=19% Similarity=0.298 Sum_probs=71.1
Q ss_pred CCCceeecCCccccCccchhhhcccCCCcEEeCCCCccccchhhccccCCCCccEEEcCCCccCcchhhhhhcCCCCCCc
Q 001036 259 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLN 338 (1180)
Q Consensus 259 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~ 338 (1180)
|.|++|.+.+-.+...--.....++|+|..||++++.+++. .+++.+++|+.|.+.+-.+.....+ ..+-.+++|+
T Consensus 148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq~L~mrnLe~e~~~~l-~~LF~L~~L~ 223 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQVLSMRNLEFESYQDL-IDLFNLKKLR 223 (699)
T ss_pred cccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHHHHhccCCCCCchhhH-HHHhcccCCC
Confidence 44444444443332211123334455555555555555443 3445555555555555444432222 2333456666
Q ss_pred eecccCCcccccccc----hhhhcCCCCccEEEcCCCCCchhhHhhHhhhCCCCCEEEcCCCcc
Q 001036 339 TLHLESNNFTATLTT----TQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEV 398 (1180)
Q Consensus 339 ~L~L~~~~~~~~~~~----~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 398 (1180)
.||++.-........ .+....+|.|+.||.++..+.....+.+...-|+|+.+.+-+|..
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~~~ 287 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDCLA 287 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhhhc
Confidence 666655433222100 012234788888888888888877777766567777777665543
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.40 E-value=0.00065 Score=75.47 Aligned_cols=15 Identities=13% Similarity=0.184 Sum_probs=7.8
Q ss_pred CCcccEEEccCCccc
Q 001036 615 NTKLEFLYLVNDSLA 629 (1180)
Q Consensus 615 ~~~L~~L~l~~n~~~ 629 (1180)
+.+++.|++++|.++
T Consensus 51 ~~~l~~L~Is~c~L~ 65 (426)
T PRK15386 51 ARASGRLYIKDCDIE 65 (426)
T ss_pred hcCCCEEEeCCCCCc
Confidence 455555555555444
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.33 E-value=9.1e-05 Score=89.24 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=7.6
Q ss_pred CCCCCEEEccCCcc
Q 001036 514 LTSIEELRLSNNHF 527 (1180)
Q Consensus 514 l~~L~~L~L~~n~l 527 (1180)
+..++.+++.++..
T Consensus 426 ~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 426 CSNLKDLDLSGCRV 439 (482)
T ss_pred hhccccCCccCccc
Confidence 44555566655543
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.29 E-value=0.00044 Score=67.23 Aligned_cols=87 Identities=28% Similarity=0.295 Sum_probs=55.8
Q ss_pred hcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccc-cccccCCccC
Q 001036 662 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI-FSRIFSLRNL 740 (1180)
Q Consensus 662 ~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L 740 (1180)
....+...+|+++|.+.. -..|..+..|.+|.+.+|+|+ .|...+...+++|+.|.|.+|++.... -..+..+|.|
T Consensus 39 ~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 39 ATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred ccccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence 335567777888887762 235667778888888888887 666666666777888888887765321 1223445555
Q ss_pred ceeeccCCccc
Q 001036 741 RWLLLEGNHFV 751 (1180)
Q Consensus 741 ~~L~L~~n~l~ 751 (1180)
++|.+-+|+.+
T Consensus 116 ~~Ltll~Npv~ 126 (233)
T KOG1644|consen 116 EYLTLLGNPVE 126 (233)
T ss_pred ceeeecCCchh
Confidence 55555555544
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.26 E-value=0.0006 Score=64.93 Aligned_cols=95 Identities=22% Similarity=0.282 Sum_probs=31.3
Q ss_pred CCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCcee
Q 001036 664 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 743 (1180)
Q Consensus 664 l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 743 (1180)
+++++.+.+..+ +......+|.++.+++.+.+.+ .+. .++...+..+++++.+++..+ +.......|.+. +|+.+
T Consensus 34 ~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i 108 (129)
T PF13306_consen 34 CTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEI 108 (129)
T ss_dssp -TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EE
T ss_pred cccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccccccccccCcc-ccEEchhhhcCC-CceEE
Confidence 334444444332 3333333444444444444433 222 344444444455555555443 333333444444 55555
Q ss_pred eccCCcccccCCCcCCCCCCC
Q 001036 744 LLEGNHFVGEIPQSLSKCSSL 764 (1180)
Q Consensus 744 ~L~~n~l~~~~p~~~~~l~~L 764 (1180)
.+.. .+..+....|.++++|
T Consensus 109 ~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 109 NIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp E-TT-B-SS----GGG-----
T ss_pred EECC-CccEECCccccccccC
Confidence 5544 3333444455555554
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.23 E-value=0.00072 Score=64.37 Aligned_cols=108 Identities=22% Similarity=0.230 Sum_probs=46.9
Q ss_pred ChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccC
Q 001036 657 PVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFS 736 (1180)
Q Consensus 657 p~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 736 (1180)
+...+..+++|+.+.+.. .+..+...+|.++++|+.+.+..+ +. .++...+.++.+++.+.+.. .+.......|..
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccc
Confidence 344444455666666653 455455566666666776666654 44 55666665665666666654 333333444445
Q ss_pred CccCceeeccCCcccccCCCcCCCCCCCcEEECc
Q 001036 737 LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLN 770 (1180)
Q Consensus 737 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~ 770 (1180)
+++|+.+++..+ +.......|.++ +|+.+.+.
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 555555555443 333333344444 55555444
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.16 E-value=0.00018 Score=86.62 Aligned_cols=39 Identities=26% Similarity=0.299 Sum_probs=16.7
Q ss_pred cCCCcEEeCCCCc-cccchhhccccCCCCccEEEcCCCcc
Q 001036 283 LSNLEELDINDNE-IDNVEVSRGYRGLRKLKSLDLSGVGI 321 (1180)
Q Consensus 283 l~~L~~L~L~~n~-~~~~~~~~~l~~l~~L~~L~L~~~~~ 321 (1180)
+++|++|.+..|. +++..+......+++|++|++++|..
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 3444444444343 34434444444444444444444433
No 67
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.91 E-value=0.0013 Score=63.97 Aligned_cols=85 Identities=25% Similarity=0.314 Sum_probs=57.3
Q ss_pred CccEEeCCCCcCCCcccccccccccCCCCccEEEcCCCcCCchhhHHhhccCCCceeecCCccccCccchhhhcccCCCc
Q 001036 208 NLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLE 287 (1180)
Q Consensus 208 ~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~ 287 (1180)
+...+|++.|.+..... |..++.|.+|.++.|+++...+.--.-+++|..|.+.+|.+.+....+.+..+|.|+
T Consensus 43 ~~d~iDLtdNdl~~l~~------lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN------LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred ccceecccccchhhccc------CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 55677888887765432 777888888888888877766665556667777777776666544455556666666
Q ss_pred EEeCCCCcccc
Q 001036 288 ELDINDNEIDN 298 (1180)
Q Consensus 288 ~L~L~~n~~~~ 298 (1180)
+|.+-+|+++.
T Consensus 117 ~Ltll~Npv~~ 127 (233)
T KOG1644|consen 117 YLTLLGNPVEH 127 (233)
T ss_pred eeeecCCchhc
Confidence 66666665543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.00037 Score=70.81 Aligned_cols=102 Identities=25% Similarity=0.287 Sum_probs=65.1
Q ss_pred CCCceeecCCccccCccchhhhcccCCCcEEeCCCCccccchhhccccCCCCccEEEcCCCccCcchhhhhhcCCCCCCc
Q 001036 259 SSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLN 338 (1180)
Q Consensus 259 ~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~ 338 (1180)
.+.++|+..+|.+. +......++.|+.|.|+-|.+++. ..+..|++|++|+|..|.|.+...+ .-+.++|+|+
T Consensus 19 ~~vkKLNcwg~~L~---DIsic~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~sldEL-~YLknlpsLr 91 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD---DISICEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIESLDEL-EYLKNLPSLR 91 (388)
T ss_pred HHhhhhcccCCCcc---HHHHHHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhcccccHHHH-HHHhcCchhh
Confidence 34455555555554 224556677888888887777653 3567788888888888877776553 4567788888
Q ss_pred eecccCCcccccccc---hhhhcCCCCccEEE
Q 001036 339 TLHLESNNFTATLTT---TQELHNFTNLEYLT 367 (1180)
Q Consensus 339 ~L~L~~~~~~~~~~~---~~~~~~l~~L~~L~ 367 (1180)
.|+|..|+-.+..+. ...+..+|+|++|+
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 888888776654332 12344455555554
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.33 E-value=0.0024 Score=65.24 Aligned_cols=89 Identities=24% Similarity=0.352 Sum_probs=63.7
Q ss_pred cCCCCCCEEEccCcccCCCchhcccccccCCCCCcEEecCCC--cCCCCccccccCCCCCcEEEccCccccCccChhhcc
Q 001036 80 TPFQQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGN--AFNNNVLSSLARLSSLRSLYLSDNRLEGSIDVKELD 157 (1180)
Q Consensus 80 ~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~--~i~~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~~l~ 157 (1180)
-.+..|+.|++.+..++.. ..+-.+++|++|.++.| ++.+.++.....+++|++|++++|++...-....+.
T Consensus 40 d~~~~le~ls~~n~gltt~------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL------TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred ccccchhhhhhhccceeec------ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence 3455666777776666544 34567888999999998 666666666677799999999999876433334567
Q ss_pred CCCCCCeEEccCCCCCc
Q 001036 158 SLRDLEELDIGGNKIDK 174 (1180)
Q Consensus 158 ~L~~L~~L~L~~~~l~~ 174 (1180)
++.+|..|++..|....
T Consensus 114 ~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhcchhhhhcccCCccc
Confidence 77788888888876544
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.0004 Score=70.55 Aligned_cols=84 Identities=18% Similarity=0.191 Sum_probs=48.0
Q ss_pred CCCcEEEccCccccCccChhhccCCCCCCeEEccCCCCCchhhhcccCCcceecccCCCcccccccccccCCCCccEEeC
Q 001036 135 SSLRSLYLSDNRLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDM 214 (1180)
Q Consensus 135 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~L 214 (1180)
.+-+.|+.-+|.+.. .....+++.|++|.|+-|+|+...+...|++|++++|..|.+.+......+.++++|+.|.|
T Consensus 19 ~~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccH---HHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 344455555555442 22445666666666666666666666666666666666666554444455555666666665
Q ss_pred CCCcCCC
Q 001036 215 SGNEIDN 221 (1180)
Q Consensus 215 s~~~l~~ 221 (1180)
..|...+
T Consensus 96 ~ENPCc~ 102 (388)
T KOG2123|consen 96 DENPCCG 102 (388)
T ss_pred ccCCccc
Confidence 5554433
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.20 E-value=0.00012 Score=84.80 Aligned_cols=201 Identities=25% Similarity=0.248 Sum_probs=110.8
Q ss_pred CCEEEccCcccCCCchhcccccccCCCCCcEEecCCCcCCCCccccccC----C-CCCcEEEccCccccCccC---hhhc
Q 001036 85 LESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLSSLAR----L-SSLRSLYLSDNRLEGSID---VKEL 156 (1180)
Q Consensus 85 L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~lp~~l~~----l-~~L~~L~L~~~~~~~~~~---~~~l 156 (1180)
++.|+|.+|.+...........+....+|..|++++|.+.+.....+++ . ..|++|++..|.++.... .+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 7778888888777666666666777788888888888877543333332 2 456777777777654321 2345
Q ss_pred cCCCCCCeEEccCCCCCchhhhcccCCcceecccCCCcccccccccccCCCCccEEeCCCCcCCCcccccccccccCCCC
Q 001036 157 DSLRDLEELDIGGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSK 236 (1180)
Q Consensus 157 ~~L~~L~~L~L~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~ 236 (1180)
.....++.++++.|.+...........++ ..+....++++|++++|.++..........+...+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~---------------~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~ 233 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALE---------------SAASPLSSLETLKLSRCGVTSSSCALLDEVLASGES 233 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhh---------------hhhcccccHHHHhhhhcCcChHHHHHHHHHHhccch
Confidence 55677777777777764322111111110 022345566666666666554333333333445554
Q ss_pred -ccEEEcCCCcCCchhhH----Hhhcc-CCCceeecCCccccCccc---hhhhcccCCCcEEeCCCCccccch
Q 001036 237 -LKKLDLRGNLCNNSILS----SVARL-SSLTSLHLSHNILQGSID---AKEFDSLSNLEELDINDNEIDNVE 300 (1180)
Q Consensus 237 -L~~L~L~~~~~~~~~~~----~l~~l-~~L~~L~L~~~~~~~~~~---~~~l~~l~~L~~L~L~~n~~~~~~ 300 (1180)
+..+++..|.+.+.... .+..+ ..+++++++.|.+...-. ...+..++.++++.++.|.+.+..
T Consensus 234 ~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~ 306 (478)
T KOG4308|consen 234 LLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYG 306 (478)
T ss_pred hhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHH
Confidence 55566666665554322 22223 455666666666553222 122334456666666666655443
No 72
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.85 E-value=0.004 Score=63.67 Aligned_cols=85 Identities=27% Similarity=0.416 Sum_probs=37.5
Q ss_pred CCCccEEeCCCCcCCCcccccccccccCCCCccEEEcCCC--cCCchhhHHhhccCCCceeecCCccccCccchhhhccc
Q 001036 206 FNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGN--LCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSL 283 (1180)
Q Consensus 206 l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~--~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l 283 (1180)
+..|+.|++.++.++... .+-.+++|++|.++.| ++..........+++|+++++++|++.-.-....+..+
T Consensus 42 ~~~le~ls~~n~gltt~~------~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT------NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred ccchhhhhhhccceeecc------cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence 344555555555444322 1445566666666666 33333333333334444444444444321112233334
Q ss_pred CCCcEEeCCCCcc
Q 001036 284 SNLEELDINDNEI 296 (1180)
Q Consensus 284 ~~L~~L~L~~n~~ 296 (1180)
++|..|++.+|..
T Consensus 116 ~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 116 ENLKSLDLFNCSV 128 (260)
T ss_pred cchhhhhcccCCc
Confidence 4444444444433
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.64 E-value=0.0047 Score=37.40 Aligned_cols=19 Identities=58% Similarity=0.866 Sum_probs=8.2
Q ss_pred CCEEeCcccccccccccccc
Q 001036 1009 IQTLNLSHNNLTGTIPLTFS 1028 (1180)
Q Consensus 1009 L~~L~Ls~N~l~g~~p~~~~ 1028 (1180)
|++||||+|+|+ .+|.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 344444444444 3444333
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.26 E-value=0.0069 Score=36.67 Aligned_cols=21 Identities=43% Similarity=0.661 Sum_probs=15.4
Q ss_pred CCCEEECcCCcCcccCCccccC
Q 001036 1032 HIESLDLSYNKLSGKIPRQLVD 1053 (1180)
Q Consensus 1032 ~L~~L~Ls~N~l~g~ip~~l~~ 1053 (1180)
+|+.|||++|+|+ .+|.+|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4678888888888 77776654
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.51 E-value=0.0077 Score=70.04 Aligned_cols=69 Identities=26% Similarity=0.271 Sum_probs=28.2
Q ss_pred ccCCCCccEEeCCCCcCCCcccccccccccCC-CCccEEEcCCCcCCch----hhHHhhccCCCceeecCCccc
Q 001036 203 FDSFNNLEVLDMSGNEIDNLVVPQGLERLSRL-SKLKKLDLRGNLCNNS----ILSSVARLSSLTSLHLSHNIL 271 (1180)
Q Consensus 203 l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l-~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~L~~~~~ 271 (1180)
+....+|+.|++++|.+.........+.+... ..+++|++..|.++.. ..+.+.....++.++++.|.+
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 33444555555555554433222222223332 3444444444444332 222233334444444444443
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.02 E-value=0.011 Score=58.95 Aligned_cols=82 Identities=23% Similarity=0.223 Sum_probs=71.4
Q ss_pred ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036 984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus 984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
..+.||++.|++. ..-.-|..++.|..||+|.|++. ..|..++.+..+..+++-.|.++ ..|.++...+.+.+++.-
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 5778999999987 45566788888999999999998 88999999999999999999988 889999999999999998
Q ss_pred CCcCc
Q 001036 1064 YNNLS 1068 (1180)
Q Consensus 1064 ~N~l~ 1068 (1180)
.|.+.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 88764
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.65 E-value=0.21 Score=27.94 Aligned_cols=11 Identities=55% Similarity=0.869 Sum_probs=3.5
Q ss_pred CCEEECcCCcC
Q 001036 1033 IESLDLSYNKL 1043 (1180)
Q Consensus 1033 L~~L~Ls~N~l 1043 (1180)
|+.|+|++|+|
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444443
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.52 E-value=0.19 Score=28.12 Aligned_cols=13 Identities=54% Similarity=0.802 Sum_probs=5.3
Q ss_pred CCCEEeCcccccc
Q 001036 1008 RIQTLNLSHNNLT 1020 (1180)
Q Consensus 1008 ~L~~L~Ls~N~l~ 1020 (1180)
+|++|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.11 E-value=0.22 Score=49.20 Aligned_cols=84 Identities=30% Similarity=0.254 Sum_probs=47.5
Q ss_pred CcEEeCCCCccccchhhccccCCCCccEEEcCCCccCcchhhhhhcCCCCCCceecccCCcccccccchhhhcCCCCccE
Q 001036 286 LEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEY 365 (1180)
Q Consensus 286 L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~ 365 (1180)
++.++-+++.+...+ .+.+..++.++.|.+..|...++..+-..-+-.++|+.|+|++|+-.++... ..+..+++|+.
T Consensus 103 IeaVDAsds~I~~eG-le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEG-LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHH-HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-HHHHHhhhhHH
Confidence 455566666554433 3455666666677777666555444433333456777777777765544322 24555666666
Q ss_pred EEcCCC
Q 001036 366 LTLDDS 371 (1180)
Q Consensus 366 L~L~~~ 371 (1180)
|.+.+-
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 666553
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.47 E-value=0.28 Score=48.47 Aligned_cols=87 Identities=22% Similarity=0.197 Sum_probs=44.1
Q ss_pred CccEEEcCCCcCCchhhHHhhccCCCceeecCCccccCccchhhhcccCCCcEEeCCCCccccchhhccccCCCCccEEE
Q 001036 236 KLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLD 315 (1180)
Q Consensus 236 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~ 315 (1180)
.++.++-+++.+.......+..++.++.|.+.+|.-.+..-.+.+++ ..++|+.|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~------------------------~~~~L~~L~ 157 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG------------------------LAPSLQDLD 157 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc------------------------cccchheee
Confidence 45566666666655566666666666666665554332222222211 234444444
Q ss_pred cCCCccCcchhhhhhcCCCCCCceecccCCcc
Q 001036 316 LSGVGIRDGNKLLQSMGSFPSLNTLHLESNNF 347 (1180)
Q Consensus 316 L~~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 347 (1180)
|++|.-.+. .-...+..+++|+.|++.+-+.
T Consensus 158 lsgC~rIT~-~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 158 LSGCPRITD-GGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred ccCCCeech-hHHHHHHHhhhhHHHHhcCchh
Confidence 444432221 1234566677777777766543
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.43 E-value=0.59 Score=29.55 Aligned_cols=13 Identities=38% Similarity=0.721 Sum_probs=5.5
Q ss_pred CCCEEeCcccccc
Q 001036 1008 RIQTLNLSHNNLT 1020 (1180)
Q Consensus 1008 ~L~~L~Ls~N~l~ 1020 (1180)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.43 E-value=0.59 Score=29.55 Aligned_cols=13 Identities=38% Similarity=0.721 Sum_probs=5.5
Q ss_pred CCCEEeCcccccc
Q 001036 1008 RIQTLNLSHNNLT 1020 (1180)
Q Consensus 1008 ~L~~L~Ls~N~l~ 1020 (1180)
+|+.|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.41 E-value=0.62 Score=29.46 Aligned_cols=23 Identities=48% Similarity=0.726 Sum_probs=14.6
Q ss_pred CCCCCEEECcCCcCcccCCCCcc
Q 001036 905 LNQLQLLDLSDNNLHGLIPSCFD 927 (1180)
Q Consensus 905 l~~L~~L~Ls~N~l~~~~p~~~~ 927 (1180)
+++|++|+|++|+++...+..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 35677777777777766555443
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.41 E-value=0.62 Score=29.46 Aligned_cols=23 Identities=48% Similarity=0.726 Sum_probs=14.6
Q ss_pred CCCCCEEECcCCcCcccCCCCcc
Q 001036 905 LNQLQLLDLSDNNLHGLIPSCFD 927 (1180)
Q Consensus 905 l~~L~~L~Ls~N~l~~~~p~~~~ 927 (1180)
+++|++|+|++|+++...+..|.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHcc
Confidence 35677777777777766555443
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.85 E-value=0.05 Score=54.32 Aligned_cols=99 Identities=27% Similarity=0.356 Sum_probs=76.9
Q ss_pred ccCCcccCCCC-ccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCc
Q 001036 990 LSCNKLVGHIP-PQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 1068 (1180)
Q Consensus 990 Ls~N~l~g~~p-~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~ 1068 (1180)
+|--.++ +|| .++......+.||+|.|++. -.-..|+-++.|+.||+|.|++. ..|..+..+..+..+++.+|+++
T Consensus 25 ~s~s~~s-~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~ 101 (326)
T KOG0473|consen 25 LSLSELS-EIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS 101 (326)
T ss_pred CCHHHhc-ccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh
Confidence 3333444 344 45777888999999999998 45567888899999999999998 89999999999999999999888
Q ss_pred ccCCCcccccccCCccccCCCCCC
Q 001036 1069 GKIPEWTAQFATFNKSSYDGNPFL 1092 (1180)
Q Consensus 1069 g~ip~~~~~~~~~~~~~~~~N~~l 1092 (1180)
..|-...+..........+||+.
T Consensus 102 -~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 102 -QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred -hCCccccccCCcchhhhccCcch
Confidence 45544667666666666777643
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=75.42 E-value=17 Score=41.14 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=15.1
Q ss_pred CceecccCCcccccccchhhhcCCCCccEEEcCC
Q 001036 337 LNTLHLESNNFTATLTTTQELHNFTNLEYLTLDD 370 (1180)
Q Consensus 337 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 370 (1180)
+++|.+++++..+..........-+..+.+++..
T Consensus 356 ~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agr 389 (553)
T KOG4242|consen 356 VQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGR 389 (553)
T ss_pred eeEeeccccccccccccccceeeccccccccccc
Confidence 5555555555444332222333444444444443
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=73.39 E-value=3 Score=25.67 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=11.4
Q ss_pred CCccEEEcCCCCCchhhHhhH
Q 001036 361 TNLEYLTLDDSSLHISLLQSI 381 (1180)
Q Consensus 361 ~~L~~L~L~~~~~~~~~~~~~ 381 (1180)
++|++|++++|.+.......+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 566666777666665555443
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=73.09 E-value=2 Score=26.54 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=9.3
Q ss_pred CCccEEEcCCCcCCchhhHHh
Q 001036 235 SKLKKLDLRGNLCNNSILSSV 255 (1180)
Q Consensus 235 ~~L~~L~L~~~~~~~~~~~~l 255 (1180)
++|++|++++|.+++....++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 445555555555444444433
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=72.02 E-value=3.1 Score=26.32 Aligned_cols=15 Identities=53% Similarity=0.771 Sum_probs=10.6
Q ss_pred CCCCCEEECcCCcCc
Q 001036 1030 LRHIESLDLSYNKLS 1044 (1180)
Q Consensus 1030 l~~L~~L~Ls~N~l~ 1044 (1180)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777775
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.62 E-value=4.5 Score=25.52 Aligned_cols=13 Identities=46% Similarity=0.718 Sum_probs=6.6
Q ss_pred CCCEEeCcccccc
Q 001036 1008 RIQTLNLSHNNLT 1020 (1180)
Q Consensus 1008 ~L~~L~Ls~N~l~ 1020 (1180)
+|+.|+.|+|+|+
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3445555555554
No 91
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=62.39 E-value=3.4 Score=29.08 Aligned_cols=6 Identities=33% Similarity=0.916 Sum_probs=3.0
Q ss_pred chhhhh
Q 001036 1148 PYWRRR 1153 (1180)
Q Consensus 1148 ~~~~~~ 1153 (1180)
.||||.
T Consensus 34 ~~~rR~ 39 (40)
T PF08693_consen 34 FWYRRK 39 (40)
T ss_pred eEEecc
Confidence 355553
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=54.17 E-value=12 Score=43.34 Aligned_cols=32 Identities=31% Similarity=0.510 Sum_probs=18.0
Q ss_pred CCccEEEcCCCCCchh------hHhhHhhhCCCCCEEE
Q 001036 361 TNLEYLTLDDSSLHIS------LLQSIGSIFPSLKNLS 392 (1180)
Q Consensus 361 ~~L~~L~L~~~~~~~~------~~~~~~~~l~~L~~L~ 392 (1180)
..|++|-+.+|++... ....+.+.||+|..|+
T Consensus 270 l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 270 LPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred CCHHHeeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 3456666666665432 2234445578777765
No 93
>PF15102 TMEM154: TMEM154 protein family
Probab=49.26 E-value=18 Score=34.04 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhhhccchhhh
Q 001036 1131 ISYVIVIFGIVVVLYVNPYWRR 1152 (1180)
Q Consensus 1131 ~~~~~~~~~~~~~~~~~~~~~~ 1152 (1180)
+.+++++++++++++++||||.
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHHHheeEEeeccc
Confidence 4444444444444444555554
No 94
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=48.75 E-value=22 Score=22.91 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=15.4
Q ss_pred CCccEEEcCCCCCchhhHhhHhh
Q 001036 361 TNLEYLTLDDSSLHISLLQSIGS 383 (1180)
Q Consensus 361 ~~L~~L~L~~~~~~~~~~~~~~~ 383 (1180)
++|++|+|++|.+.......+..
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 46777888887777665555543
No 95
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=48.07 E-value=1e+02 Score=35.31 Aligned_cols=17 Identities=35% Similarity=0.229 Sum_probs=8.3
Q ss_pred CCcEEEccCccccCccC
Q 001036 136 SLRSLYLSDNRLEGSID 152 (1180)
Q Consensus 136 ~L~~L~L~~~~~~~~~~ 152 (1180)
.+.++|++.|.....++
T Consensus 215 ~lteldls~n~~Kddip 231 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIP 231 (553)
T ss_pred cccccccccCCCCccch
Confidence 34555555555444433
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=46.68 E-value=5.7 Score=54.93 Aligned_cols=36 Identities=22% Similarity=0.131 Sum_probs=29.0
Q ss_pred ECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCC
Q 001036 1037 DLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 1072 (1180)
Q Consensus 1037 ~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip 1072 (1180)
||++|+|+..-+..|..+++|+.|+|++|++.+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence 689999997777778888899999888887776544
No 97
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=45.75 E-value=13 Score=33.52 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHhhhhccchhhhhhhHHHHH
Q 001036 1130 TISYVIVIFGIVVVLYVNPYWRRRWLYLVEM 1160 (1180)
Q Consensus 1130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1160 (1180)
.+++.+++++.++.++++||.|++++-+.|.
T Consensus 106 il~il~~i~is~~~~~~yr~~r~~~~~~~~~ 136 (139)
T PHA03099 106 IVLVLVGIIITCCLLSVYRFTRRTKLPLQDM 136 (139)
T ss_pred HHHHHHHHHHHHHHHhhheeeecccCchhhc
Confidence 3445555555666777889999998876654
No 98
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=34.63 E-value=24 Score=32.43 Aligned_cols=18 Identities=11% Similarity=0.360 Sum_probs=7.4
Q ss_pred hhhHHHHHHHHHHHhhhh
Q 001036 1128 TFTISYVIVIFGIVVVLY 1145 (1180)
Q Consensus 1128 ~~~~~~~~~~~~~~~~~~ 1145 (1180)
++++|++.++++++++++
T Consensus 68 ~Ii~gv~aGvIg~Illi~ 85 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLIS 85 (122)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 99
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=30.34 E-value=23 Score=33.62 Aligned_cols=26 Identities=8% Similarity=0.077 Sum_probs=10.0
Q ss_pred ehhhHHHHHHHHHHHhhhhccchhhh
Q 001036 1127 ITFTISYVIVIFGIVVVLYVNPYWRR 1152 (1180)
Q Consensus 1127 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 1152 (1180)
+++++|..+++++++++++++++.++
T Consensus 54 vVVGVGg~ill~il~lvf~~c~r~kk 79 (154)
T PF04478_consen 54 VVVGVGGPILLGILALVFIFCIRRKK 79 (154)
T ss_pred EEecccHHHHHHHHHhheeEEEeccc
Confidence 33444444443333333333333333
No 100
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.97 E-value=32 Score=40.05 Aligned_cols=68 Identities=19% Similarity=0.194 Sum_probs=29.9
Q ss_pred CCCCCceecccCCcccccccchhhhcCCCCccEEEcCCCCCchhhHhhHhh-hCCCCCEEEcCCCcccc
Q 001036 333 SFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGS-IFPSLKNLSMSGCEVNG 400 (1180)
Q Consensus 333 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~ 400 (1180)
+.|.+..+.+++|++.............|+|+.|+|++|........++.+ ....|++|-+.+|++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 345555555555554433222222334556666666665221111111111 13455566666665443
No 101
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=29.19 E-value=36 Score=28.52 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhhhccchhhhhhhHHHHHhhceEEEEEEe
Q 001036 1131 ISYVIVIFGIVVVLYVNPYWRRRWLYLVEMWITSCYYFVID 1171 (1180)
Q Consensus 1131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1180)
++.+.++++.++++|+.++..|+ .+++-+|..++.
T Consensus 37 ~lvI~~iFil~VilwfvCC~kRk------rsRrPIYrPvI~ 71 (94)
T PF05393_consen 37 FLVICGIFILLVILWFVCCKKRK------RSRRPIYRPVIG 71 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh------hccCCccccccc
Confidence 34444444444555554444432 566667766654
No 102
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=29.17 E-value=37 Score=21.33 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=5.3
Q ss_pred CCCceecccCCc
Q 001036 335 PSLNTLHLESNN 346 (1180)
Q Consensus 335 ~~L~~L~L~~~~ 346 (1180)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 344444444443
No 103
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=28.41 E-value=44 Score=23.49 Aligned_cols=7 Identities=14% Similarity=0.928 Sum_probs=3.2
Q ss_pred hccchhh
Q 001036 1145 YVNPYWR 1151 (1180)
Q Consensus 1145 ~~~~~~~ 1151 (1180)
+++|+|.
T Consensus 28 ~iYRKw~ 34 (43)
T PF08114_consen 28 FIYRKWQ 34 (43)
T ss_pred HHHHHHH
Confidence 3345553
No 104
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.89 E-value=40 Score=47.36 Aligned_cols=32 Identities=28% Similarity=0.326 Sum_probs=25.8
Q ss_pred EccCCcccCCCCccccCCCCCCEEeCcccccc
Q 001036 989 DLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT 1020 (1180)
Q Consensus 989 dLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 1020 (1180)
||++|+|+...+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68888888666677888888888888888665
Done!