Query 001036
Match_columns 1180
No_of_seqs 956 out of 5670
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 07:40:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001036.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001036hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4E-84 1.4E-88 816.2 55.3 737 14-1104 6-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.7E-67 1.3E-71 661.6 47.0 617 461-1094 95-719 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 4.1E-55 1.4E-59 548.3 51.2 560 461-1103 44-634 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 4E-54 1.4E-58 539.3 51.4 520 461-1072 92-626 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 2.2E-51 7.4E-56 523.4 44.1 551 465-1105 23-593 (844)
6 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-50 4.9E-55 515.8 46.1 530 469-1099 7-567 (844)
7 3t6q_A CD180 antigen; protein- 100.0 4.6E-50 1.6E-54 495.7 46.9 516 466-1097 33-565 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-49 3.6E-54 492.4 40.3 514 466-1098 32-564 (606)
9 3t6q_A CD180 antigen; protein- 100.0 4.4E-49 1.5E-53 486.8 44.0 502 461-1073 52-565 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 3.3E-48 1.1E-52 479.0 43.4 516 437-1073 31-563 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 5E-45 1.7E-49 447.7 37.8 491 466-1073 28-536 (570)
12 4eco_A Uncharacterized protein 100.0 4.9E-46 1.7E-50 457.6 22.4 380 650-1096 193-630 (636)
13 2z63_A TOLL-like receptor 4, v 100.0 7.6E-44 2.6E-48 437.2 38.8 486 544-1100 11-539 (570)
14 4ecn_A Leucine-rich repeat pro 100.0 3.9E-44 1.3E-48 445.4 31.7 381 649-1096 434-870 (876)
15 2z81_A CD282 antigen, TOLL-lik 100.0 7.5E-44 2.6E-48 434.7 33.6 397 612-1073 94-515 (549)
16 4eco_A Uncharacterized protein 100.0 3.2E-45 1.1E-49 450.4 17.6 444 591-1095 81-603 (636)
17 2z81_A CD282 antigen, TOLL-lik 100.0 4.5E-43 1.5E-47 427.8 35.1 467 466-1048 26-514 (549)
18 4ecn_A Leucine-rich repeat pro 100.0 1.6E-43 5.5E-48 439.8 28.0 393 601-1068 435-864 (876)
19 2z7x_B TOLL-like receptor 1, v 100.0 3.6E-43 1.2E-47 425.0 22.6 161 855-1072 321-485 (520)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-42 4.1E-47 420.5 21.8 438 591-1099 21-488 (520)
21 4g8a_A TOLL-like receptor 4; l 100.0 1.4E-40 4.9E-45 414.5 39.2 516 466-1098 52-586 (635)
22 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-38 4.1E-43 397.1 42.6 514 439-1072 53-584 (635)
23 3v47_A TOLL-like receptor 5B a 100.0 1.6E-39 5.6E-44 386.3 31.2 372 643-1073 13-413 (455)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.9E-40 1.7E-44 400.7 24.5 458 466-1073 31-515 (562)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6E-39 2E-43 391.0 28.6 434 593-1098 33-516 (562)
26 1jl5_A Outer protein YOPM; leu 100.0 1.7E-38 5.7E-43 372.6 24.8 281 465-846 10-290 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 1E-37 3.6E-42 370.7 31.8 373 667-1097 12-413 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 2.4E-37 8.2E-42 362.8 29.6 378 591-1075 11-418 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 1.2E-35 4.2E-40 354.6 25.8 321 643-1045 14-334 (477)
30 2id5_A Lingo-1, leucine rich r 100.0 4.1E-35 1.4E-39 350.1 26.1 348 668-1097 14-361 (477)
31 3bz5_A Internalin-J, INLJ; leu 100.0 5.7E-35 2E-39 342.9 26.1 356 612-1074 38-393 (457)
32 1o6v_A Internalin A; bacterial 100.0 5.2E-34 1.8E-38 338.5 33.7 345 615-1069 45-389 (466)
33 1o6v_A Internalin A; bacterial 100.0 3.2E-34 1.1E-38 340.4 31.9 345 639-1093 45-389 (466)
34 1ogq_A PGIP-2, polygalacturona 100.0 8E-35 2.8E-39 325.0 20.0 260 762-1101 50-313 (313)
35 3bz5_A Internalin-J, INLJ; leu 100.0 9.7E-34 3.3E-38 332.4 27.5 356 582-1053 33-396 (457)
36 3o6n_A APL1; leucine-rich repe 100.0 2E-33 6.8E-38 325.8 28.7 335 664-1096 44-378 (390)
37 3oja_B Anopheles plasmodium-re 100.0 1.9E-33 6.4E-38 344.0 28.9 333 690-1096 52-384 (597)
38 3o6n_A APL1; leucine-rich repe 100.0 1.4E-31 4.7E-36 310.3 29.4 315 638-1049 43-357 (390)
39 1ogq_A PGIP-2, polygalacturona 100.0 6.8E-33 2.3E-37 309.4 15.9 252 739-1070 51-307 (313)
40 4fmz_A Internalin; leucine ric 100.0 4.5E-31 1.5E-35 301.1 30.7 304 664-1068 43-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 3.7E-31 1.3E-35 323.7 28.9 315 639-1050 50-364 (597)
42 4fmz_A Internalin; leucine ric 100.0 1.4E-30 4.8E-35 297.0 29.5 305 638-1044 42-346 (347)
43 2ft3_A Biglycan; proteoglycan, 100.0 3.9E-30 1.3E-34 290.7 26.6 288 690-1066 34-331 (332)
44 1xku_A Decorin; proteoglycan, 100.0 7E-30 2.4E-34 288.5 28.3 291 690-1066 32-330 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 2.4E-29 8.1E-34 284.3 27.4 230 690-928 55-286 (332)
46 1xku_A Decorin; proteoglycan, 100.0 4.8E-29 1.6E-33 281.7 29.1 253 640-928 31-285 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 4.7E-33 1.6E-37 331.3 -5.4 362 640-1069 3-412 (461)
48 1z7x_W Ribonuclease inhibitor; 100.0 6.6E-32 2.3E-36 321.4 -3.4 207 592-798 4-239 (461)
49 2z80_A TOLL-like receptor 2, v 100.0 1.9E-28 6.6E-33 279.5 14.9 282 688-1072 30-318 (353)
50 2z66_A Variable lymphocyte rec 100.0 1.4E-27 4.7E-32 266.7 20.0 232 763-1072 29-265 (306)
51 2z80_A TOLL-like receptor 2, v 99.9 4.4E-28 1.5E-32 276.5 15.2 279 713-1096 30-318 (353)
52 2z66_A Variable lymphocyte rec 99.9 8.2E-28 2.8E-32 268.5 16.2 259 740-1075 30-294 (306)
53 3zyj_A Leucine-rich repeat-con 99.9 1.7E-26 5.7E-31 271.7 25.5 252 739-1072 44-296 (440)
54 3zyi_A Leucine-rich repeat-con 99.9 1.9E-26 6.4E-31 272.3 25.5 252 739-1072 55-307 (452)
55 4fcg_A Uncharacterized protein 99.9 6.3E-27 2.2E-31 262.5 20.0 234 737-1067 80-313 (328)
56 4fcg_A Uncharacterized protein 99.9 9.3E-27 3.2E-31 261.2 20.7 188 712-928 79-275 (328)
57 3zyi_A Leucine-rich repeat-con 99.9 7.3E-26 2.5E-30 267.3 25.9 251 715-1047 55-306 (452)
58 1ozn_A Reticulon 4 receptor; N 99.9 2.3E-26 7.9E-31 253.7 19.6 167 853-1072 75-242 (285)
59 1ozn_A Reticulon 4 receptor; N 99.9 2E-26 7E-31 254.1 19.1 252 742-1074 15-267 (285)
60 3zyj_A Leucine-rich repeat-con 99.9 1.1E-25 3.8E-30 264.7 25.4 250 715-1046 44-294 (440)
61 1wwl_A Monocyte differentiatio 99.9 4.3E-28 1.5E-32 270.8 3.8 254 735-1069 40-310 (312)
62 1wwl_A Monocyte differentiatio 99.9 3.6E-27 1.2E-31 263.3 10.1 209 685-919 39-266 (312)
63 3ogk_B Coronatine-insensitive 99.9 3.5E-28 1.2E-32 299.2 2.0 332 687-1070 162-528 (592)
64 3o53_A Protein LRIM1, AGAP0063 99.9 1E-27 3.5E-32 268.4 5.0 267 716-1073 12-281 (317)
65 3ogk_B Coronatine-insensitive 99.9 4.1E-28 1.4E-32 298.6 -0.1 397 613-1065 109-548 (592)
66 3oja_A Leucine-rich immune mol 99.9 8.1E-27 2.8E-31 276.3 9.9 233 763-1062 35-269 (487)
67 3g06_A SSPH2 (leucine-rich rep 99.9 8.2E-25 2.8E-29 263.5 27.0 67 984-1055 242-308 (622)
68 3o53_A Protein LRIM1, AGAP0063 99.9 4.9E-27 1.7E-31 262.9 5.9 270 690-1051 11-283 (317)
69 3g06_A SSPH2 (leucine-rich rep 99.9 2.1E-24 7.2E-29 259.9 28.1 268 690-1079 41-308 (622)
70 3oja_A Leucine-rich immune mol 99.9 2.3E-26 7.8E-31 272.4 9.9 235 715-1040 35-271 (487)
71 2z62_A TOLL-like receptor 4, v 99.9 9.4E-24 3.2E-28 231.5 20.4 209 787-1073 29-242 (276)
72 2z62_A TOLL-like receptor 4, v 99.9 1.9E-23 6.4E-28 229.1 20.5 208 834-1096 29-241 (276)
73 2o6q_A Variable lymphocyte rec 99.9 9.9E-23 3.4E-27 222.2 22.5 207 810-1072 16-222 (270)
74 2p1m_B Transport inhibitor res 99.9 9.5E-25 3.2E-29 268.8 6.2 324 41-399 32-385 (594)
75 1p9a_G Platelet glycoprotein I 99.9 1.1E-22 3.7E-27 223.5 21.5 205 806-1070 6-210 (290)
76 2o6q_A Variable lymphocyte rec 99.9 2.3E-22 8E-27 219.2 23.7 205 835-1096 18-222 (270)
77 2p1m_B Transport inhibitor res 99.9 4.5E-26 1.5E-30 280.7 -6.8 207 612-820 101-324 (594)
78 3rfs_A Internalin B, repeat mo 99.9 2E-23 6.9E-28 227.8 14.5 165 854-1078 81-245 (272)
79 3rfs_A Internalin B, repeat mo 99.9 6.1E-23 2.1E-27 224.0 17.4 165 854-1073 59-223 (272)
80 1p9a_G Platelet glycoprotein I 99.9 6.1E-22 2.1E-26 217.5 21.8 205 758-1046 6-210 (290)
81 3m19_A Variable lymphocyte rec 99.9 1.4E-21 4.9E-26 210.4 19.7 181 836-1073 17-197 (251)
82 3goz_A Leucine-rich repeat-con 99.9 2.8E-23 9.7E-28 237.1 3.7 108 693-801 2-124 (362)
83 4glp_A Monocyte differentiatio 99.9 1.9E-22 6.4E-27 225.0 9.4 209 786-1069 91-308 (310)
84 2ca6_A RAN GTPase-activating p 99.9 2.3E-23 7.8E-28 240.6 0.5 167 853-1072 117-320 (386)
85 2xwt_C Thyrotropin receptor; s 99.9 2.5E-21 8.7E-26 207.0 15.7 196 787-1065 32-236 (239)
86 4glp_A Monocyte differentiatio 99.9 2.1E-21 7.1E-26 216.5 14.9 208 738-1045 91-308 (310)
87 3goz_A Leucine-rich repeat-con 99.9 7.7E-23 2.6E-27 233.5 3.0 177 742-919 2-209 (362)
88 3m19_A Variable lymphocyte rec 99.8 1.7E-20 5.7E-25 202.1 20.1 160 834-1047 36-195 (251)
89 2ca6_A RAN GTPase-activating p 99.8 7E-23 2.4E-27 236.6 1.6 193 783-1048 91-320 (386)
90 1h6u_A Internalin H; cell adhe 99.8 7.3E-21 2.5E-25 211.3 16.3 81 736-822 39-119 (308)
91 2ast_B S-phase kinase-associat 99.8 5.2E-22 1.8E-26 225.0 5.5 87 984-1074 223-312 (336)
92 2xwt_C Thyrotropin receptor; s 99.8 9.5E-21 3.3E-25 202.5 14.5 199 834-1089 32-236 (239)
93 2ast_B S-phase kinase-associat 99.8 5.1E-22 1.7E-26 225.0 3.7 254 714-1053 47-315 (336)
94 1h6u_A Internalin H; cell adhe 99.8 4.8E-20 1.6E-24 204.7 16.9 209 741-1044 22-230 (308)
95 3cvr_A Invasion plasmid antige 99.8 3.2E-20 1.1E-24 220.6 15.2 115 787-920 60-174 (571)
96 2o6s_A Variable lymphocyte rec 99.8 1.3E-19 4.5E-24 189.0 15.4 161 857-1077 27-187 (208)
97 4ay9_X Follicle-stimulating ho 99.8 2.2E-19 7.6E-24 203.6 18.1 208 692-928 12-224 (350)
98 4ay9_X Follicle-stimulating ho 99.8 3.5E-19 1.2E-23 202.0 18.8 244 643-917 12-257 (350)
99 2o6s_A Variable lymphocyte rec 99.8 3.3E-19 1.1E-23 186.0 16.8 65 984-1055 125-189 (208)
100 3cvr_A Invasion plasmid antige 99.8 4.1E-19 1.4E-23 211.0 17.5 194 763-1030 60-253 (571)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 9.3E-19 3.2E-23 183.5 15.5 156 861-1072 14-170 (220)
102 2v9t_B SLIT homolog 2 protein 99.8 1.2E-18 4E-23 182.8 13.8 156 861-1072 14-169 (220)
103 2xot_A Amphoterin-induced prot 99.8 8.8E-19 3E-23 199.5 13.2 178 836-1070 21-204 (361)
104 2v9t_B SLIT homolog 2 protein 99.8 3.2E-18 1.1E-22 179.5 16.1 154 836-1046 14-167 (220)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 3E-18 1E-22 179.6 14.7 158 885-1098 14-172 (220)
106 3e6j_A Variable lymphocyte rec 99.7 1.1E-17 3.7E-22 176.8 16.7 156 860-1072 21-176 (229)
107 2xot_A Amphoterin-induced prot 99.7 4.5E-18 1.5E-22 193.6 13.6 178 813-1046 21-204 (361)
108 3e6j_A Variable lymphocyte rec 99.7 1.9E-17 6.6E-22 174.8 16.5 156 884-1096 21-176 (229)
109 1m9s_A Internalin B; cell inva 99.7 1E-17 3.5E-22 201.7 14.8 168 716-921 23-190 (605)
110 1h6t_A Internalin B; cell adhe 99.7 2E-17 6.9E-22 181.7 15.7 173 807-1070 43-215 (291)
111 1w8a_A SLIT protein; signaling 99.7 2.4E-17 8.2E-22 168.7 12.1 112 984-1097 55-167 (192)
112 1dce_A Protein (RAB geranylger 99.7 6.5E-20 2.2E-24 219.6 -9.1 77 984-1062 487-567 (567)
113 1w8a_A SLIT protein; signaling 99.7 4.1E-17 1.4E-21 167.0 11.7 176 861-1096 11-187 (192)
114 1m9s_A Internalin B; cell inva 99.7 1.1E-16 3.9E-21 192.6 17.4 200 688-928 20-219 (605)
115 1h6t_A Internalin B; cell adhe 99.7 2.5E-16 8.7E-21 172.9 17.2 153 734-922 64-216 (291)
116 4ezg_A Putative uncharacterize 99.7 9.6E-17 3.3E-21 165.3 12.0 156 854-1069 40-195 (197)
117 1xeu_A Internalin C; cellular 99.7 1.3E-16 4.5E-21 172.2 12.4 168 835-1071 21-188 (263)
118 1dce_A Protein (RAB geranylger 99.7 2.5E-18 8.4E-23 206.0 -3.0 184 807-1073 346-551 (567)
119 4b8c_D Glucose-repressible alc 99.7 2.5E-17 8.5E-22 203.9 4.2 216 738-1045 173-405 (727)
120 4b8c_D Glucose-repressible alc 99.7 3.3E-17 1.1E-21 202.8 5.2 184 714-927 173-362 (727)
121 1xeu_A Internalin C; cellular 99.6 4.1E-16 1.4E-20 168.3 10.5 174 714-926 19-192 (263)
122 4ezg_A Putative uncharacterize 99.6 1.3E-15 4.4E-20 156.8 12.1 152 664-823 43-194 (197)
123 2ell_A Acidic leucine-rich nuc 99.6 1.5E-15 5.1E-20 152.0 10.2 62 858-921 24-86 (168)
124 3sb4_A Hypothetical leucine ri 99.6 3.5E-15 1.2E-19 167.5 13.1 76 984-1061 251-327 (329)
125 2wfh_A SLIT homolog 2 protein 99.6 4.4E-15 1.5E-19 151.7 12.6 114 984-1098 32-145 (193)
126 3sb4_A Hypothetical leucine ri 99.6 1.7E-15 5.7E-20 170.1 9.5 283 615-912 24-327 (329)
127 2ell_A Acidic leucine-rich nuc 99.6 2.9E-15 9.8E-20 149.9 10.2 137 881-1073 23-164 (168)
128 2o6r_A Variable lymphocyte rec 99.6 1E-14 3.4E-19 147.4 14.0 89 984-1072 53-141 (177)
129 2wfh_A SLIT homolog 2 protein 99.6 1.1E-14 3.7E-19 148.8 14.2 88 984-1071 55-142 (193)
130 2je0_A Acidic leucine-rich nuc 99.6 2.1E-15 7.3E-20 147.4 8.3 80 984-1063 65-148 (149)
131 2o6r_A Variable lymphocyte rec 99.6 1.4E-14 4.9E-19 146.2 13.9 133 860-1048 9-141 (177)
132 4fdw_A Leucine rich hypothetic 99.6 9.8E-14 3.4E-18 158.6 20.7 239 641-916 136-380 (401)
133 2je0_A Acidic leucine-rich nuc 99.5 3.3E-15 1.1E-19 146.1 6.9 128 858-1040 17-149 (149)
134 4fdw_A Leucine rich hypothetic 99.5 3.8E-13 1.3E-17 153.7 21.7 265 713-1067 112-382 (401)
135 4fs7_A Uncharacterized protein 99.5 5.4E-13 1.9E-17 153.7 21.8 237 756-1059 156-392 (394)
136 4fs7_A Uncharacterized protein 99.5 1.1E-12 3.7E-17 151.1 22.6 333 606-1036 61-393 (394)
137 1ds9_A Outer arm dynein; leuci 99.5 5E-16 1.7E-20 160.1 -5.6 155 854-1068 14-185 (198)
138 1a9n_A U2A', U2A'; complex (nu 99.5 7.9E-14 2.7E-18 140.4 8.4 66 853-921 14-79 (176)
139 1a9n_A U2A', U2A'; complex (nu 99.4 9.4E-14 3.2E-18 139.9 7.9 135 877-1069 14-154 (176)
140 3g39_A Variable lymphocyte rec 99.4 5E-13 1.7E-17 133.3 12.2 90 984-1073 31-120 (170)
141 3g39_A Variable lymphocyte rec 99.4 4E-13 1.4E-17 134.0 11.2 110 984-1096 10-119 (170)
142 2r9u_A Variable lymphocyte rec 99.4 9.3E-13 3.2E-17 131.7 11.2 108 986-1096 15-122 (174)
143 1ds9_A Outer arm dynein; leuci 99.4 5.5E-15 1.9E-19 152.2 -5.9 139 877-1073 13-158 (198)
144 2r9u_A Variable lymphocyte rec 99.4 1.6E-12 5.4E-17 130.0 12.2 90 984-1073 34-123 (174)
145 4gt6_A Cell surface protein; l 99.2 3.3E-10 1.1E-14 130.3 23.0 135 849-1043 256-390 (394)
146 2ifg_A High affinity nerve gro 99.2 1.1E-11 3.7E-16 140.4 10.1 112 984-1096 32-145 (347)
147 4gt6_A Cell surface protein; l 99.2 7.2E-10 2.5E-14 127.5 25.5 323 666-1067 65-390 (394)
148 2ifg_A High affinity nerve gro 99.2 1.9E-11 6.7E-16 138.3 10.5 109 986-1097 11-121 (347)
149 3un9_A NLR family member X1; l 99.1 2.1E-12 7.2E-17 146.1 -2.6 164 858-1069 72-253 (372)
150 3un9_A NLR family member X1; l 99.0 1.2E-11 4E-16 139.9 -2.7 159 665-823 72-252 (372)
151 4h09_A Hypothetical leucine ri 99.0 4.6E-08 1.6E-12 111.8 24.4 303 587-930 42-356 (379)
152 4h09_A Hypothetical leucine ri 98.9 8.1E-08 2.8E-12 109.8 24.8 69 984-1054 287-355 (379)
153 2ra8_A Uncharacterized protein 98.5 4.8E-08 1.7E-12 109.1 4.8 65 1005-1069 250-321 (362)
154 2ra8_A Uncharacterized protein 98.5 4.5E-08 1.6E-12 109.3 3.0 59 857-917 278-341 (362)
155 3rw6_A Nuclear RNA export fact 98.2 5.8E-07 2E-11 94.7 4.5 78 982-1061 169-257 (267)
156 1io0_A Tropomodulin; LRR prote 98.2 2.6E-07 9E-12 92.9 1.8 69 106-174 31-107 (185)
157 1io0_A Tropomodulin; LRR prote 98.2 1E-06 3.6E-11 88.5 6.0 71 202-272 31-106 (185)
158 3rw6_A Nuclear RNA export fact 98.1 5.3E-07 1.8E-11 95.0 1.5 84 988-1073 148-238 (267)
159 3e4g_A ATP synthase subunit S, 98.0 3.2E-06 1.1E-10 82.2 3.6 87 83-174 61-154 (176)
160 3e4g_A ATP synthase subunit S, 97.7 1.7E-05 5.8E-10 77.0 4.4 35 236-270 62-96 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00027 9.4E-09 70.0 6.0 48 205-252 39-87 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.8 0.0014 4.8E-08 64.9 6.6 67 202-268 65-135 (197)
163 3rfe_A Platelet glycoprotein I 96.5 0.0034 1.2E-07 58.1 6.3 56 987-1044 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.4 0.0054 1.8E-07 56.7 6.7 58 1010-1069 11-69 (130)
165 2lz0_A Uncharacterized protein 32.6 53 0.0018 27.9 4.8 14 756-769 37-50 (100)
166 2lz0_A Uncharacterized protein 29.5 75 0.0026 27.0 5.2 43 678-722 9-51 (100)
167 2k1k_A Ephrin type-A receptor 20.2 48 0.0016 22.4 1.7 7 1129-1135 16-22 (38)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4e-84 Score=816.24 Aligned_cols=737 Identities=31% Similarity=0.429 Sum_probs=497.3
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCC----CCCCCcccceeEecCCCCceEEEEeccccCCcccccccccccCCCCCCEEE
Q 001036 14 SEGCLDHERFALLRLKHFFTDPYDK----GATDCCQWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLD 89 (1180)
Q Consensus 14 ~~~~~~~~~~~ll~~k~~~~~~~~~----~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~ 89 (1180)
+..+.++||+|||+||+++.||... .++|||+|+||+|+ ++||++|+|++..+.|.+..-+..+.++++|++++
T Consensus 6 ~~~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~ 83 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred cccCCHHHHHHHHHHHhhCCCcccccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence 4456789999999999999998621 46899999999998 69999999999888775332345678889999999
Q ss_pred ccCcccCCCchhcccccccCCCCCcEEecCCCcCCCCccc--cccCCCCCcEEEccCccccCccChhhccCCCCCCeEEc
Q 001036 90 LSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNAFNNNVLS--SLARLSSLRSLYLSDNRLEGSIDVKELDSLRDLEELDI 167 (1180)
Q Consensus 90 Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~i~~~lp~--~l~~l~~L~~L~L~~~~~~~~~~~~~l~~L~~L~~L~L 167 (1180)
++.+.+...+ +.++++++||+|||++|.+.+.+|. .++++++|++|++++|.+.+.++...++++++|++|++
T Consensus 84 ~~~~~~~~l~-----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 158 (768)
T 3rgz_A 84 LSNSHINGSV-----SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158 (768)
T ss_dssp CTTSCEEECC-----CCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred CcCCCcCCCc-----hhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEEC
Confidence 9988765433 4688999999999999999888888 89999999999999999987777644588899999999
Q ss_pred cCCCCCchhhhcccCCcceecccCCCcccccccccccCCCCccEEeCCCCcCCCcccccccccccCCCCccEEEcCCCcC
Q 001036 168 GGNKIDKFMVSKGLSKLKSLGLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLC 247 (1180)
Q Consensus 168 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~ 247 (1180)
++|.+.+..+.. ...+.++++|++|++++|.+.+..+ ...+++|++|++++|
T Consensus 159 s~n~l~~~~~~~--------------------~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~Ls~n-- 210 (768)
T 3rgz_A 159 SANSISGANVVG--------------------WVLSDGCGELKHLAISGNKISGDVD------VSRCVNLEFLDVSSN-- 210 (768)
T ss_dssp CSSCCEEETHHH--------------------HHHTTCCTTCCEEECCSSEEESCCB------CTTCTTCCEEECCSS--
T ss_pred CCCccCCcCChh--------------------hhhhccCCCCCEEECCCCcccccCC------cccCCcCCEEECcCC--
Confidence 988876654321 0113445555555555554433211 122222333322222
Q ss_pred CchhhHHhhccCCCceeecCCccccCccchhhhcccCCCcEEeCCCCccccchhhccccCCCCccEEEcCCCccCcchhh
Q 001036 248 NNSILSSVARLSSLTSLHLSHNILQGSIDAKEFDSLSNLEELDINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKL 327 (1180)
Q Consensus 248 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 327 (1180)
.+.+.+
T Consensus 211 ----------------------~l~~~~---------------------------------------------------- 216 (768)
T 3rgz_A 211 ----------------------NFSTGI---------------------------------------------------- 216 (768)
T ss_dssp ----------------------CCCSCC----------------------------------------------------
T ss_pred ----------------------cCCCCC----------------------------------------------------
Confidence 221111
Q ss_pred hhhcCCCCCCceecccCCcccccccchhhhcCCCCccEEEcCCCCCchhhHhhHhhhCCCCCEEEcCCCcccccccCCCC
Q 001036 328 LQSMGSFPSLNTLHLESNNFTATLTTTQELHNFTNLEYLTLDDSSLHISLLQSIGSIFPSLKNLSMSGCEVNGVLSGQGF 407 (1180)
Q Consensus 328 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 407 (1180)
+ .++++++|++|++++|.+.+..+..+.. +++|++|++++|.+.+.+|.
T Consensus 217 ------------------------~---~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~--- 265 (768)
T 3rgz_A 217 ------------------------P---FLGDCSALQHLDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPP--- 265 (768)
T ss_dssp ------------------------C---BCTTCCSCCEEECCSSCCCSCHHHHTTT-CSSCCEEECCSSCCEESCCC---
T ss_pred ------------------------c---ccccCCCCCEEECcCCcCCCcccHHHhc-CCCCCEEECCCCcccCccCc---
Confidence 1 1233344444444444443333333333 45555555555544433331
Q ss_pred CccccceeeccchhhhccccchhhhhcccCCcceeeeccCcccCCCCccccccccCCCCCCcEEEccCCCcccccchhhc
Q 001036 408 PHFKSLEHLDMRFARIALNTSFLQIIGESMPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLA 487 (1180)
Q Consensus 408 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 487 (1180)
. .+++|++|++++|.+++.+|..+.
T Consensus 266 ------------------------------------------------------~-~l~~L~~L~L~~n~l~~~ip~~~~ 290 (768)
T 3rgz_A 266 ------------------------------------------------------L-PLKSLQYLSLAENKFTGEIPDFLS 290 (768)
T ss_dssp ------------------------------------------------------C-CCTTCCEEECCSSEEEESCCCCSC
T ss_pred ------------------------------------------------------c-ccCCCCEEECcCCccCCccCHHHH
Confidence 0 245566666666666666665554
Q ss_pred CC-CCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcEEecCCcccccccccccCCCCcc
Q 001036 488 NT-TSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKF 566 (1180)
Q Consensus 488 ~l-~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~ 566 (1180)
.. ++|++|++++|.+++.+ +..+.++++|++|++++|.+.+.++...+.++++|
T Consensus 291 ~~~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L------------------------ 345 (768)
T 3rgz_A 291 GACDTLTGLDLSGNHFYGAV-PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL------------------------ 345 (768)
T ss_dssp TTCTTCSEEECCSSEEEECC-CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTC------------------------
T ss_pred hhcCcCCEEECcCCcCCCcc-chHHhcCCCccEEECCCCcccCcCCHHHHhcCCCC------------------------
Confidence 43 66666666666665544 45555555566655555555443333222222222
Q ss_pred cceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccCCcccCCCCCCCCCCC-CccEE
Q 001036 567 QLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHK-RLRFL 645 (1180)
Q Consensus 567 ~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L 645 (1180)
+.|++++|.+++.+|..+..++ +|++|
T Consensus 346 ----------------------------------------------------~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 346 ----------------------------------------------------KVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp ----------------------------------------------------CEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred ----------------------------------------------------CEEeCcCCccCccccHHHHhhhcCCcEE
Confidence 2222222222222222222222 45566
Q ss_pred EccCCcccccCChhhhhc-CCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCC
Q 001036 646 DVSNNNFQGHIPVEIGDI-LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNN 724 (1180)
Q Consensus 646 ~l~~n~l~~~ip~~~~~~-l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n 724 (1180)
++++|.++|.+|..+... +++|++|++++|.+++.+|..++++++|++|++++|++++.+|..+ ..+++|++|++++|
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLN 452 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSS
T ss_pred EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCC
Confidence 666666666666555421 4677777777777777777777777777777777777776676665 36777777777777
Q ss_pred cccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCc
Q 001036 725 SLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPV 804 (1180)
Q Consensus 725 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~ 804 (1180)
.+++.+|..+..+++|++|++++|++++.+|..+.++++|++|++++|++++.+|.+++.+++|++|++++|+++|.+|.
T Consensus 453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 532 (768)
T 3rgz_A 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cccCCCCCCEEEccCCcccccCCCCcCCC-cccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCC
Q 001036 805 EFCRLDSLQILDISDNNISGSLPSCFYPL-SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQ 883 (1180)
Q Consensus 805 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~ 883 (1180)
.++.+++|++|++++|+++|.+|..+... .+.. ..-....+...+.++... ..+...+.
T Consensus 533 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~--- 592 (768)
T 3rgz_A 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA----------------ANFIAGKRYVYIKNDGMK-KECHGAGN--- 592 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC----------------CSTTCSCEEEEEECCSCC-TTCCSSEE---
T ss_pred HHcCCCCCCEEECCCCccCCcCChHHhcccchhh----------------hhcccccccccccccccc-cccccccc---
Confidence 77777777777777777776666543211 0000 000001111222222111 00000000
Q ss_pred CCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhh
Q 001036 884 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKIL 963 (1180)
Q Consensus 884 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1180)
. -.+.+..+..+..++.++.++++.|.++|.+|..+++++
T Consensus 593 --~-----~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~--------------------------------- 632 (768)
T 3rgz_A 593 --L-----LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG--------------------------------- 632 (768)
T ss_dssp --E-----EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB---------------------------------
T ss_pred --c-----cccccccchhhhccccccccccccceecccCchhhhccc---------------------------------
Confidence 0 134566777788888888899999999999998887644
Q ss_pred hhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcC
Q 001036 964 EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 1043 (1180)
Q Consensus 964 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 1043 (1180)
.|+.||||+|+++|.+|.+|+++++|+.||||+|+++|.||++|+++++|+.||||+|++
T Consensus 633 --------------------~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 633 --------------------SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692 (768)
T ss_dssp --------------------CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred --------------------cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence 789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccCCCCCCEEEcCCCcCcccCCCcccccccCCccccCCCCCCCCCCCCCCCCcC
Q 001036 1044 SGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPICRSLA 1104 (1180)
Q Consensus 1044 ~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~l~~c~~~~ 1104 (1180)
+|.||..+.+++.|++||+++|+++|.||+ .++|.++...+|.|||++||.|+..|....
T Consensus 693 ~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~-~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~ 752 (768)
T 3rgz_A 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPRCDPSN 752 (768)
T ss_dssp EECCCGGGGGCCCCSEEECCSSEEEEECCS-SSSGGGSCGGGGCSCTEEESTTSCCCCSCC
T ss_pred cCcCChHHhCCCCCCEEECcCCcccccCCC-chhhccCCHHHhcCCchhcCCCCcCCCCCc
Confidence 999999999999999999999999999999 789999999999999999999988886543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.7e-67 Score=661.64 Aligned_cols=617 Identities=28% Similarity=0.402 Sum_probs=506.6
Q ss_pred ccCCCCCCcEEEccCCCcccccch--hhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCccc--c
Q 001036 461 GLCPLAHLQELYIDNNDLRGSLPW--CLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEP--L 536 (1180)
Q Consensus 461 ~l~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~--l 536 (1180)
.++.+++|++|++++|.+.+.+|. .++++++|++|++++|.+.+.++...+.++++|++|++++|.+++..+... +
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 174 (768)
T 3rgz_A 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174 (768)
T ss_dssp CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHT
T ss_pred hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhh
Confidence 455566777777777777776666 677777777777777777666644444667777777777777765443221 5
Q ss_pred cCCCCCcEEecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCC
Q 001036 537 FNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNT 616 (1180)
Q Consensus 537 ~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~ 616 (1180)
.++++|+++++++|.+.+..+. ....+|++|++++|... ..+|. +..+++|++|++++|.+.+.+|.. +.+++
T Consensus 175 ~~l~~L~~L~Ls~n~l~~~~~~----~~l~~L~~L~Ls~n~l~-~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~ 247 (768)
T 3rgz_A 175 DGCGELKHLAISGNKISGDVDV----SRCVNLEFLDVSSNNFS-TGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCT 247 (768)
T ss_dssp TCCTTCCEEECCSSEEESCCBC----TTCTTCCEEECCSSCCC-SCCCB-CTTCCSCCEEECCSSCCCSCHHHH-TTTCS
T ss_pred ccCCCCCEEECCCCcccccCCc----ccCCcCCEEECcCCcCC-CCCcc-cccCCCCCEEECcCCcCCCcccHH-HhcCC
Confidence 6677777777777776543322 34456777777665433 34455 788899999999999999988887 57899
Q ss_pred cccEEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEc
Q 001036 617 KLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDL 696 (1180)
Q Consensus 617 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 696 (1180)
+|+.|++++|.+++..+.. .+++|++|++++|.++|.+|..++..+++|++|++++|.+++.+|..|+++++|++|++
T Consensus 248 ~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 325 (768)
T 3rgz_A 248 ELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325 (768)
T ss_dssp SCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEEC
Confidence 9999999999999877665 88999999999999999999998876699999999999999999999999999999999
Q ss_pred cCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCc-cCceeeccCCcccccCCCcCCC--CCCCcEEECcCCc
Q 001036 697 SNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLR-NLRWLLLEGNHFVGEIPQSLSK--CSSLKGLYLNNNN 773 (1180)
Q Consensus 697 ~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~--l~~L~~L~l~~n~ 773 (1180)
++|+++|.+|...+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+.. +++|++|++++|.
T Consensus 326 ~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~ 405 (768)
T 3rgz_A 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405 (768)
T ss_dssp CSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE
T ss_pred CCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc
Confidence 999999999998777899999999999999999999999998 9999999999999999988877 8899999999999
Q ss_pred CCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcC-CCcccEEEcCCcccccccCcc
Q 001036 774 LSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNMLHGQLKEG 852 (1180)
Q Consensus 774 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~~~L~~L~l~~n~~~~~~~~~ 852 (1180)
+++.+|.+++++++|++|++++|++++.+|..+..+++|++|++++|++++.+|..+. ..+|++|++++|.+.+.+|.
T Consensus 406 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~- 484 (768)
T 3rgz_A 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS- 484 (768)
T ss_dssp EEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG-
T ss_pred cccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCH-
Confidence 9999999999999999999999999999999999999999999999999999998774 57999999999999999998
Q ss_pred cccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccc
Q 001036 853 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLH 932 (1180)
Q Consensus 853 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 932 (1180)
.+.++++|++|++++|++++.+|.+++.+++|++|++++|+++|.+|..++.+++|++||+++|+++|.+|..+......
T Consensus 485 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~ 564 (768)
T 3rgz_A 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTC
T ss_pred HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccch
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999987664422
Q ss_pred cccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEE
Q 001036 933 ESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTL 1012 (1180)
Q Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L 1012 (1180)
........ .. ..+....+..... ........+ .+.. ......++.+..++++.|.+.|.+|..++++++|++|
T Consensus 565 ~~~~~~~~--~~-~~~~~~~~~~~~~-~~~~~~~~~--~~~~-~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L 637 (768)
T 3rgz_A 565 IAANFIAG--KR-YVYIKNDGMKKEC-HGAGNLLEF--QGIR-SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637 (768)
T ss_dssp BCCSTTCS--CE-EEEEECCSCCTTC-CSSEEEEEC--TTCC-GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred hhhhcccc--cc-ccccccccccccc-ccccccccc--cccc-chhhhccccccccccccceecccCchhhhccccccEE
Confidence 21110000 00 0000000000000 000000000 0000 0001224567778999999999999999999999999
Q ss_pred eCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccccccCCccccCCCCCC
Q 001036 1013 NLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFL 1092 (1180)
Q Consensus 1013 ~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~~N~~l 1092 (1180)
|||+|+++|.+|.+|+++++|+.|||++|+++|.||.++++++.|++||+|+|+++|.||..+..+..+...++++|+..
T Consensus 638 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp ECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred ECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999754
Q ss_pred CC
Q 001036 1093 CG 1094 (1180)
Q Consensus 1093 c~ 1094 (1180)
..
T Consensus 718 g~ 719 (768)
T 3rgz_A 718 GP 719 (768)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.1e-55 Score=548.30 Aligned_cols=560 Identities=20% Similarity=0.234 Sum_probs=458.0
Q ss_pred ccCCCCCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCC
Q 001036 461 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHS 540 (1180)
Q Consensus 461 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 540 (1180)
.+..+++|++|++++|.+++..|..++++++|++|++++|.++ .+++..+.++++|++|++++|.+. .++...|.+++
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~ 121 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQK 121 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCT
T ss_pred HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccC-ccChhHccccC
Confidence 4566777777777777777777777777777777777777776 454556777777777777777775 34445567777
Q ss_pred CCcEEecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhh-hhcCCccc
Q 001036 541 KLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWL-LENNTKLE 619 (1180)
Q Consensus 541 ~L~~l~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~-~~~~~~L~ 619 (1180)
+|++|++++|.+.+. .|..+..+++|++|++++|.+.+..+..+ ...+++|+
T Consensus 122 ~L~~L~Ls~n~l~~~---------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 122 NLITLDLSHNGLSST---------------------------KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp TCCEEECCSSCCSCC---------------------------CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred CCCEEECCCCccccc---------------------------CchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 777777777765432 23445567788888888888877665543 22568899
Q ss_pred EEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhh--cCCCCcEEEccCCcCCccCCccccCccc--CcEEE
Q 001036 620 FLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGD--ILPSLVYFNISMNALDGSIPSSFGNVIF--LQFLD 695 (1180)
Q Consensus 620 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~--~l~~L~~L~ls~n~l~~~~p~~~~~l~~--L~~L~ 695 (1180)
.|++++|.+++..+..+..+++|+.++++++.+.+.....+.. ..++|+.|++++|.+++..|..|.+++. |+.|+
T Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence 9999999999888888888999999999998876433222211 1478999999999999999999998876 99999
Q ss_pred ccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccc-----cCCC----cCCCCCCCcE
Q 001036 696 LSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG-----EIPQ----SLSKCSSLKG 766 (1180)
Q Consensus 696 l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~p~----~~~~l~~L~~ 766 (1180)
+++|++++..|.. +..+++|++|++++|.+++..|..+.++++|++|++++|...+ .+|. .|..+++|++
T Consensus 255 Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~ 333 (680)
T 1ziw_A 255 LSYNNLNVVGNDS-FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333 (680)
T ss_dssp CTTSCCCEECTTT-TTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred CCCCCcCccCccc-ccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence 9999998544444 4689999999999999999999999999999999999876553 2332 7888999999
Q ss_pred EECcCCcCCCCCcccccCCCCCCeEEccCCcCCCC--CCccccC--CCCCCEEEccCCcccccCCCCcC-CCcccEEEcC
Q 001036 767 LYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP--IPVEFCR--LDSLQILDISDNNISGSLPSCFY-PLSIKQVHLS 841 (1180)
Q Consensus 767 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~--l~~L~~L~l~~n~l~~~~p~~~~-~~~L~~L~l~ 841 (1180)
|++++|.+.+..|..+.++++|++|++++|.+.+. .+..|.. .++|+.|++++|++++..|..+. ..+|+.|+++
T Consensus 334 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 413 (680)
T 1ziw_A 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413 (680)
T ss_dssp EECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred EECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCC
Confidence 99999999998888999999999999999986433 2233433 36899999999999988887775 4689999999
Q ss_pred CcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccc--cCCCccccCCCCCCEEECcCCcCc
Q 001036 842 KNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLE--GEVPIQLCRLNQLQLLDLSDNNLH 919 (1180)
Q Consensus 842 ~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~ 919 (1180)
+|.+.+.+|...|.++++|++|++++|++++..+..|..+++|+.|++++|.+. +.+|..+..+++|++|++++|+++
T Consensus 414 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 493 (680)
T 1ziw_A 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493 (680)
T ss_dssp SSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC
T ss_pred CCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC
Confidence 999999888778999999999999999999999999999999999999999987 678999999999999999999999
Q ss_pred ccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCC
Q 001036 920 GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI 999 (1180)
Q Consensus 920 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~ 999 (1180)
+..|..|.+++ .|+.|||++|++++..
T Consensus 494 ~i~~~~~~~l~-----------------------------------------------------~L~~L~Ls~N~l~~~~ 520 (680)
T 1ziw_A 494 NINDDMLEGLE-----------------------------------------------------KLEILDLQHNNLARLW 520 (680)
T ss_dssp CCCTTTTTTCT-----------------------------------------------------TCCEEECCSSCCGGGG
T ss_pred cCChhhhcccc-----------------------------------------------------ccCEEeCCCCCccccc
Confidence 88887776644 7999999999998642
Q ss_pred --------CccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccC
Q 001036 1000 --------PPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKI 1071 (1180)
Q Consensus 1000 --------p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~i 1071 (1180)
+..|+++++|++|+|++|+++...+..|+++++|+.|||++|++++..|..|..+++|+.|++++|++++.+
T Consensus 521 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 521 KHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp STTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred hhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 234889999999999999999655567999999999999999999877778899999999999999999988
Q ss_pred CCccc-ccccCCccccCCCCCCCCCCC-CCCCCc
Q 001036 1072 PEWTA-QFATFNKSSYDGNPFLCGLPL-PICRSL 1103 (1180)
Q Consensus 1072 p~~~~-~~~~~~~~~~~~N~~lc~~~l-~~c~~~ 1103 (1180)
|..+. .+.++...++.|||+.|+|+. .|...|
T Consensus 601 ~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~ 634 (680)
T 1ziw_A 601 KKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW 634 (680)
T ss_dssp HHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECC
T ss_pred hhHhcccccccCEEEccCCCcccCCccHHHHHHH
Confidence 87555 678888899999999999985 555444
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4e-54 Score=539.33 Aligned_cols=520 Identities=24% Similarity=0.236 Sum_probs=338.9
Q ss_pred ccCCCCCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccc--cC
Q 001036 461 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPL--FN 538 (1180)
Q Consensus 461 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l--~~ 538 (1180)
.+..+++|++|++++|.+++..|..|+++++|++|++++|.+++.. +..+.++++|++|++++|.+++..+ ..+ ..
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~ 169 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK-LGTQVQLENLQELLLSNNKIQALKS-EELDIFA 169 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC-CCSSSCCTTCCEEECCSSCCCCBCH-HHHGGGT
T ss_pred hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccC-chhhcccccCCEEEccCCcccccCH-HHhhccc
Confidence 3556677777777777777666667777777777777777776443 5566677777777777776653222 111 23
Q ss_pred CCCCcEEecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhh--hcCC
Q 001036 539 HSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLL--ENNT 616 (1180)
Q Consensus 539 l~~L~~l~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~--~~~~ 616 (1180)
+++|+.+++++|.+.+. .|..+..+.+++.+++.++.+.+.....+. ...+
T Consensus 170 ~~~L~~L~L~~n~l~~~---------------------------~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~ 222 (680)
T 1ziw_A 170 NSSLKKLELSSNQIKEF---------------------------SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT 222 (680)
T ss_dssp TCEESEEECTTCCCCCB---------------------------CTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTS
T ss_pred cccccEEECCCCccccc---------------------------ChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhc
Confidence 45555555555554332 233445556666667766665543322211 1235
Q ss_pred cccEEEccCCcccCCCCCCCCCCCC--ccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEE
Q 001036 617 KLEFLYLVNDSLAGPFRLPIHSHKR--LRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFL 694 (1180)
Q Consensus 617 ~L~~L~l~~n~~~~~~~~~~~~~~~--L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 694 (1180)
+|+.|++++|.+++..+..+..++. |+.|++++|.+++..|..+. .+++|++|++++|.+++..|..|.++++|++|
T Consensus 223 ~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (680)
T 1ziw_A 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSCCBSEECTTTTTTCTTCCEE
T ss_pred cccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccccc-CcccccEeeCCCCccCccChhhhcCCCCccEE
Confidence 5666666666666555555544433 66666666655543333333 25566666666666655555555566666666
Q ss_pred EccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcC
Q 001036 695 DLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL 774 (1180)
Q Consensus 695 ~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 774 (1180)
++++|...+.++.. .+.......|..+++|++|++++|.+++..|..|.++++|++|++++|.+
T Consensus 302 ~L~~~~~~~~~~~~----------------~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 302 NLKRSFTKQSISLA----------------SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365 (680)
T ss_dssp ECTTCBCCC----------------------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBS
T ss_pred eccchhhhcccccc----------------cccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCch
Confidence 66554433211100 00011112445555666666666666555555556666666666666554
Q ss_pred CCCC-c-ccccC--CCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCC-Cc-CCCcccEEEcCCcccccc
Q 001036 775 SGKI-P-RWLGN--LKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPS-CF-YPLSIKQVHLSKNMLHGQ 848 (1180)
Q Consensus 775 ~~~~-p-~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~-~~~~L~~L~l~~n~~~~~ 848 (1180)
.... + ..+.. .++|+.|++++|++++..|..|..+++|++|++++|++++.+|. .+ ...+|++|++++|.+.+.
T Consensus 366 ~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 445 (680)
T 1ziw_A 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445 (680)
T ss_dssp CCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEEC
T ss_pred hhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCccee
Confidence 3211 1 11221 24566666666666666666666666666666666666655543 22 234566666666666544
Q ss_pred cCcccccCCCCCcEEECcCccCc--cccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCc
Q 001036 849 LKEGTFFNCSSLVTLDLSYNYLN--GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 926 (1180)
Q Consensus 849 ~~~~~~~~~~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 926 (1180)
.+. .|..+++|+.|++++|.++ +.+|..|.++++|++|++++|++++..|..|.++++|++|+|++|++++..+..+
T Consensus 446 ~~~-~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 524 (680)
T 1ziw_A 446 TRN-SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524 (680)
T ss_dssp CTT-TTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTS
T ss_pred Chh-hhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhc
Confidence 444 8889999999999999987 5789999999999999999999998888889999999999999999987654433
Q ss_pred cCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCC
Q 001036 927 DNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNL 1006 (1180)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l 1006 (1180)
..... .....++.|+.|||++|+++...+..|+++
T Consensus 525 ~~~~~---------------------------------------------~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l 559 (680)
T 1ziw_A 525 PGGPI---------------------------------------------YFLKGLSHLHILNLESNGFDEIPVEVFKDL 559 (680)
T ss_dssp TTSCC---------------------------------------------CTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCcc---------------------------------------------hhhcCCCCCCEEECCCCCCCCCCHHHcccc
Confidence 21100 000124589999999999995555579999
Q ss_pred CCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCcccc-CCCCCCEEEcCCCcCcccCC
Q 001036 1007 TRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLV-DLNTLAIFIVAYNNLSGKIP 1072 (1180)
Q Consensus 1007 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~-~l~~L~~l~ls~N~l~g~ip 1072 (1180)
++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..|..+. .+++|+.+++++|++.+..+
T Consensus 560 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred cCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 9999999999999988888899999999999999999998888887 78999999999999999887
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-51 Score=523.40 Aligned_cols=551 Identities=20% Similarity=0.175 Sum_probs=375.5
Q ss_pred CCCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcE
Q 001036 465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKI 544 (1180)
Q Consensus 465 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 544 (1180)
.+++++|++++|.+++..|..|.++++|++|++++|...+.+++..+.++++|++|++++|.+.+. ....|.++++|++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCC
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc-CHhHccCCcccCE
Confidence 467888888888888777888888888888888888776677677788888888888888888743 3456778888888
Q ss_pred EecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcC--CcccEEE
Q 001036 545 FDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENN--TKLEFLY 622 (1180)
Q Consensus 545 l~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~--~~L~~L~ 622 (1180)
|++++|.+.+.......+....+|++|+++.|.......+..+.++++|++|++++|.+.+..|..+ ..+ ++|+.|+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~ 180 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQGKTLSFFS 180 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG-HHHHHCSSCCCE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc-ccccCCccceEE
Confidence 8888887765433332334444555555555544444444455566666666666666655555442 233 5566666
Q ss_pred ccCCcccCCCCCCCCCCCC------ccEEEccCCcccccCChhhhhcC--CCCcEEEccCCcCCccCCccccCcccCcEE
Q 001036 623 LVNDSLAGPFRLPIHSHKR------LRFLDVSNNNFQGHIPVEIGDIL--PSLVYFNISMNALDGSIPSSFGNVIFLQFL 694 (1180)
Q Consensus 623 l~~n~~~~~~~~~~~~~~~------L~~L~l~~n~l~~~ip~~~~~~l--~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 694 (1180)
+++|.+.+..+..+..+.+ |+.|++++|.+++.+|..+...+ +.++.+.++.+.....
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~-------------- 246 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG-------------- 246 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS--------------
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc--------------
Confidence 6666665555544444333 55555555555544444443211 2344444442221100
Q ss_pred EccCcccccccChhhhhc--CCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCC
Q 001036 695 DLSNNKLTGEIPDHLAMC--CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNN 772 (1180)
Q Consensus 695 ~l~~n~l~~~ip~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 772 (1180)
...+.+. .+....+.+ .++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..|.++++|++|++++|
T Consensus 247 -~~~~~l~-~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N 324 (844)
T 3j0a_A 247 -FGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324 (844)
T ss_dssp -SSCSSST-TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC
T ss_pred -ccccccC-CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC
Confidence 1122232 112222223 367888888888888888888888888999999988888888888888888999999998
Q ss_pred cCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcc
Q 001036 773 NLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEG 852 (1180)
Q Consensus 773 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~ 852 (1180)
.+.+..|..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+++. +. .++++.+++++|++. .+|.
T Consensus 325 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~---~~~L~~L~l~~N~l~-~l~~- 398 (844)
T 3j0a_A 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-HF---IPSIPDIFLSGNKLV-TLPK- 398 (844)
T ss_dssp CCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-SS---CCSCSEEEEESCCCC-CCCC-
T ss_pred CCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-cC---CCCcchhccCCCCcc-cccc-
Confidence 88877788888888899999999888887777888888999999999888742 22 456778888888776 4554
Q ss_pred cccCCCCCcEEECcCccCcccc-chhhhcCCCCCEEecCCCccccCCCc-cccCCCCCCEEECcCCcCcccCCC-----C
Q 001036 853 TFFNCSSLVTLDLSYNYLNGSI-PDWIDGLSQLSHLNLAHNNLEGEVPI-QLCRLNQLQLLDLSDNNLHGLIPS-----C 925 (1180)
Q Consensus 853 ~~~~~~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~-----~ 925 (1180)
...+++.|++++|++++.. +..+.++++|++|+|++|++++..+. .+..+++|++|+|++|.+++..+. .
T Consensus 399 ---~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~ 475 (844)
T 3j0a_A 399 ---INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475 (844)
T ss_dssp ---CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSC
T ss_pred ---cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhh
Confidence 2457888888888887643 33456788888888888888865443 355678888888888888744332 2
Q ss_pred ccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccC
Q 001036 926 FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGN 1005 (1180)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~ 1005 (1180)
|.+ ++.|+.|||++|+|++.+|..|.+
T Consensus 476 ~~~-----------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~ 502 (844)
T 3j0a_A 476 FEG-----------------------------------------------------LSHLQVLYLNHNYLNSLPPGVFSH 502 (844)
T ss_dssp SSC-----------------------------------------------------BCCEECCCCCHHHHTTCCTTSSSS
T ss_pred hcC-----------------------------------------------------cccccEEECCCCcccccChhHccc
Confidence 222 346888888888888888888888
Q ss_pred CCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccccccCCccc
Q 001036 1006 LTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSS 1085 (1180)
Q Consensus 1006 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~ 1085 (1180)
+++|+.|+|++|+|++..|..+. ++|+.|||++|+|++.+|..+. .|+.+++++|++.+.++- ..|....
T Consensus 503 l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~-----~~f~~~~ 572 (844)
T 3j0a_A 503 LTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL-----STFINWL 572 (844)
T ss_dssp CCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC-----CSHHHHH
T ss_pred hhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc-----HHHHHHH
Confidence 88888888888888877777666 7888888888888888887654 677888888888876653 1111112
Q ss_pred cCCCCCCCCCCCC-CCCCcCC
Q 001036 1086 YDGNPFLCGLPLP-ICRSLAT 1105 (1180)
Q Consensus 1086 ~~~N~~lc~~~l~-~c~~~~~ 1105 (1180)
..+|..+|+.+.. .|..+..
T Consensus 573 ~~~~~~~~~~~~~~~C~~p~~ 593 (844)
T 3j0a_A 573 NHTNVTIAGPPADIYCVYPDS 593 (844)
T ss_dssp HHTTTTTCCCGGGCCCSSCSS
T ss_pred HhcCcccccccccCccCCchh
Confidence 2345555655444 5665443
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-50 Score=515.81 Aligned_cols=530 Identities=22% Similarity=0.237 Sum_probs=446.2
Q ss_pred cEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcEEecC
Q 001036 469 QELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIFDAK 548 (1180)
Q Consensus 469 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l~l~ 548 (1180)
+..+.++++++. +|. ..+++++|++++|.+++ +.+..+.++++|++|++++|...+.++...|.++++|++|+++
T Consensus 7 ~~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~-i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRT-VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSC-CCS---SCTTCCEEEEESCCCCE-ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCC-CCC---CCCCcCEEECCCCcCCc-cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 356677777774 454 45799999999999984 4478899999999999999988878877889999999999999
Q ss_pred CcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChh-hhhcCCcccEEEccCCc
Q 001036 549 NNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNW-LLENNTKLEFLYLVNDS 627 (1180)
Q Consensus 549 ~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~-~~~~~~~L~~L~l~~n~ 627 (1180)
+|.+.... |..+..+++|++|++++|.+.+.+|.. .+.++++|+.|++++|.
T Consensus 82 ~N~l~~~~---------------------------p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~ 134 (844)
T 3j0a_A 82 SSKIYFLH---------------------------PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134 (844)
T ss_dssp TCCCCEEC---------------------------TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC
T ss_pred CCcCcccC---------------------------HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc
Confidence 99876542 445666778888899999888866553 46789999999999999
Q ss_pred ccCCCC-CCCCCCCCccEEEccCCcccccCChhhhhcC--CCCcEEEccCCcCCccCCccccCccc------CcEEEccC
Q 001036 628 LAGPFR-LPIHSHKRLRFLDVSNNNFQGHIPVEIGDIL--PSLVYFNISMNALDGSIPSSFGNVIF------LQFLDLSN 698 (1180)
Q Consensus 628 ~~~~~~-~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l--~~L~~L~ls~n~l~~~~p~~~~~l~~------L~~L~l~~ 698 (1180)
+++..+ ..+..+++|++|++++|.+++..|..+.. + ++|+.|++++|.+.+..|..++.+.+ |+.|++++
T Consensus 135 l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 213 (844)
T 3j0a_A 135 IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG 213 (844)
T ss_dssp CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH-HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSS
T ss_pred ccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc-ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCC
Confidence 988655 46889999999999999999877777654 4 79999999999999988888877766 99999999
Q ss_pred cccccccChhhhhc--CCCCCEEEccC---------CcccccccccccCC--ccCceeeccCCcccccCCCcCCCCCCCc
Q 001036 699 NKLTGEIPDHLAMC--CVNLEFLSLSN---------NSLKGHIFSRIFSL--RNLRWLLLEGNHFVGEIPQSLSKCSSLK 765 (1180)
Q Consensus 699 n~l~~~ip~~~~~~--~~~L~~L~L~~---------n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 765 (1180)
|.+++.++..+... .+.++.+.++. +.+.+.....|.++ ++|+.|++++|.+.+..|..+..+++|+
T Consensus 214 n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 293 (844)
T 3j0a_A 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLK 293 (844)
T ss_dssp CCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCC
T ss_pred CcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCC
Confidence 99988888776543 35688888773 34444445556554 7899999999999999999999999999
Q ss_pred EEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcC-CCcccEEEcCCcc
Q 001036 766 GLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY-PLSIKQVHLSKNM 844 (1180)
Q Consensus 766 ~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~~~L~~L~l~~n~ 844 (1180)
.|++++|++.+..|..|..+++|++|++++|.+++..|..|.++++|+.|++++|++.+..+..+. .++|+.|++++|.
T Consensus 294 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp EEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred EEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 999999999988899999999999999999999999999999999999999999999877776664 5799999999999
Q ss_pred cccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCC-CccccCCCCCCEEECcCCcCcccCC
Q 001036 845 LHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEV-PIQLCRLNQLQLLDLSDNNLHGLIP 923 (1180)
Q Consensus 845 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p 923 (1180)
+++ +..+++|+.|++++|+++ .+|.. ..+++.|++++|++++.. +..+..+++|++|+|++|++++..+
T Consensus 374 l~~------i~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 443 (844)
T 3j0a_A 374 LTT------IHFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443 (844)
T ss_dssp SCC------CSSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS
T ss_pred CCc------ccCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccc
Confidence 873 344789999999999998 45543 567999999999998643 2346689999999999999997654
Q ss_pred CCc-cCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCccc-----C
Q 001036 924 SCF-DNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV-----G 997 (1180)
Q Consensus 924 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-----g 997 (1180)
... .. +++|+.|+|++|.++ +
T Consensus 444 ~~~~~~-----------------------------------------------------~~~L~~L~Ls~N~l~~~~~~~ 470 (844)
T 3j0a_A 444 DQTPSE-----------------------------------------------------NPSLEQLFLGENMLQLAWETE 470 (844)
T ss_dssp SSSSCS-----------------------------------------------------CTTCCBCEEESCCCSSSCCSC
T ss_pred cccccc-----------------------------------------------------CCccccccCCCCccccccccc
Confidence 322 11 337999999999997 5
Q ss_pred CCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccc
Q 001036 998 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 1077 (1180)
Q Consensus 998 ~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~ 1077 (1180)
..|..|.++++|++|+|++|+|++.+|..|+++++|+.|||++|+|++..|..+. ++|+.||+++|+++|.+|..
T Consensus 471 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--- 545 (844)
T 3j0a_A 471 LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--- 545 (844)
T ss_dssp CCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC---
T ss_pred cchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH---
Confidence 5567799999999999999999999999999999999999999999987777776 89999999999999999975
Q ss_pred cccCCccccCCCCCCCCCCCCC
Q 001036 1078 FATFNKSSYDGNPFLCGLPLPI 1099 (1180)
Q Consensus 1078 ~~~~~~~~~~~N~~lc~~~l~~ 1099 (1180)
+..+...++.|||+.|+|++.+
T Consensus 546 ~~~L~~l~l~~Np~~C~c~~~~ 567 (844)
T 3j0a_A 546 FVSLSVLDITHNKFICECELST 567 (844)
T ss_dssp CSSCCEEEEEEECCCCSSSCCS
T ss_pred hCCcCEEEecCCCcccccccHH
Confidence 3466778899999999998753
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.6e-50 Score=495.65 Aligned_cols=516 Identities=21% Similarity=0.211 Sum_probs=376.9
Q ss_pred CCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcEE
Q 001036 466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF 545 (1180)
Q Consensus 466 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l 545 (1180)
+++++|++++|.+++..|..|+++++|++|++++|++.+ +.+..|.++++|++|++++|.+.+.. ...+.++++|++|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L 110 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMA-ETALSGPKALKHL 110 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCSEEC-TTTTSSCTTCCEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCCCCcccccC-hhhhcccccccEe
Confidence 368888888888888778888888888888888888874 44677888888888888888877433 3346677777777
Q ss_pred ecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccC
Q 001036 546 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN 625 (1180)
Q Consensus 546 ~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~ 625 (1180)
++++|.+....+. . +.++++|++|++++
T Consensus 111 ~L~~n~i~~l~~~---------------------------------------------------~-~~~l~~L~~L~L~~ 138 (606)
T 3t6q_A 111 FFIQTGISSIDFI---------------------------------------------------P-LHNQKTLESLYLGS 138 (606)
T ss_dssp ECTTSCCSCGGGS---------------------------------------------------C-CTTCTTCCEEECCS
T ss_pred eccccCcccCCcc---------------------------------------------------h-hccCCcccEEECCC
Confidence 7777665532211 1 34566666777777
Q ss_pred CcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCc--EEEccCCcCCccCCccccCcccCcEEEccCccccc
Q 001036 626 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLV--YFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTG 703 (1180)
Q Consensus 626 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~--~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 703 (1180)
|.+++.....+..+++|++|++++|.+++..|..+. .+++|+ .|++++|.+++..|..|.. ..|+.|++++|..
T Consensus 139 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~-- 214 (606)
T 3t6q_A 139 NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS-SLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN-- 214 (606)
T ss_dssp SCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH-TTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC--
T ss_pred CcccccCcccccCCcccCEEEcccCcccccChhhhh-hhcccceeEEecCCCccCccChhHhhh-ccccccccCCchh--
Confidence 766664433444477777888888777744444444 377777 7788888888777666554 5678888877752
Q ss_pred ccChhhhhcCCCCCEEEccCCccc-----ccccccccCCc--cCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCC
Q 001036 704 EIPDHLAMCCVNLEFLSLSNNSLK-----GHIFSRIFSLR--NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG 776 (1180)
Q Consensus 704 ~ip~~~~~~~~~L~~L~L~~n~l~-----~~~~~~~~~l~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 776 (1180)
++..+ ..+.++....+....+. ...+..+..+. +|+.|++++|.+++..+..|+.+++|++|++++|+++
T Consensus 215 -~~~~~-~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~- 291 (606)
T 3t6q_A 215 -LLVIF-KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS- 291 (606)
T ss_dssp -HHHHH-HHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-
T ss_pred -HHHHh-hhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-
Confidence 22222 23444443333322221 11222333332 6777777777777777777777777777777777776
Q ss_pred CCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC-c-CCCcccEEEcCCccccccc--Ccc
Q 001036 777 KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSC-F-YPLSIKQVHLSKNMLHGQL--KEG 852 (1180)
Q Consensus 777 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~-~~~~L~~L~l~~n~~~~~~--~~~ 852 (1180)
.+|.++..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.. + ...+|++|++++|.+.+.. +.
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~- 370 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL- 370 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT-
T ss_pred CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch-
Confidence 66777777777777777777777766777777777777777777777666653 2 3457777777777776544 44
Q ss_pred cccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCcc-ccCCCCCCEEECcCCcCcccCCCCccCccc
Q 001036 853 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 931 (1180)
Q Consensus 853 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 931 (1180)
.+.++++|+.|++++|.+++..|..|..+++|++|++++|++.+..|.. +..+++|++|++++|++++..|..++.++
T Consensus 371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~- 449 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP- 449 (606)
T ss_dssp TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT-
T ss_pred hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC-
Confidence 6888888999999998888888888888888999999998888776554 88888899999999988888777776543
Q ss_pred ccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCC---CCccccCCCC
Q 001036 932 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGH---IPPQIGNLTR 1008 (1180)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~---~p~~~~~l~~ 1008 (1180)
.|+.|++++|++++. .+..+..+++
T Consensus 450 ----------------------------------------------------~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 477 (606)
T 3t6q_A 450 ----------------------------------------------------ALQHLNLQGNHFPKGNIQKTNSLQTLGR 477 (606)
T ss_dssp ----------------------------------------------------TCCEEECTTCBCGGGEECSSCGGGGCTT
T ss_pred ----------------------------------------------------CCCEEECCCCCCCccccccchhhccCCC
Confidence 688888999888763 3356888888
Q ss_pred CCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccccccCCccccCC
Q 001036 1009 IQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDG 1088 (1180)
Q Consensus 1009 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~~ 1088 (1180)
|++|++++|++++.+|..|+++++|+.|||++|++++.+|..+..++.| +|++++|++++.+|..+..+..+...++.|
T Consensus 478 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ 556 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTT
T ss_pred ccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCC
Confidence 9999999999988888888888899999999999988888888888888 889999998888887677778888888889
Q ss_pred CCCCCCCCC
Q 001036 1089 NPFLCGLPL 1097 (1180)
Q Consensus 1089 N~~lc~~~l 1097 (1180)
||+.|.|+.
T Consensus 557 N~~~c~c~~ 565 (606)
T 3t6q_A 557 NPLDCTCSN 565 (606)
T ss_dssp CCEECSGGG
T ss_pred CCccccCCc
Confidence 998888764
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-49 Score=492.37 Aligned_cols=514 Identities=19% Similarity=0.173 Sum_probs=402.4
Q ss_pred CCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcEE
Q 001036 466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF 545 (1180)
Q Consensus 466 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l 545 (1180)
+++++|++++|.+++..+..|.++++|++|++++|.+++ +++..|.++++|++|++++|.+++. +...|.++++|++|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc-cCHHHhhchhhcCEeECCCCccccc-ChhhcCCcccCCEE
Confidence 456666666666666555566666666666666666653 3345566666666666666665532 22334444444444
Q ss_pred ecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccC
Q 001036 546 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN 625 (1180)
Q Consensus 546 ~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~ 625 (1180)
++++| .+.+..|.. +.++++|++|++++
T Consensus 110 ~L~~n---------------------------------------------------~l~~~~~~~-~~~l~~L~~L~L~~ 137 (606)
T 3vq2_A 110 VAVET---------------------------------------------------KLASLESFP-IGQLITLKKLNVAH 137 (606)
T ss_dssp ECTTS---------------------------------------------------CCCCSSSSC-CTTCTTCCEEECCS
T ss_pred EccCC---------------------------------------------------ccccccccc-cCCCCCCCEEeCCC
Confidence 44444 443322222 56888999999999
Q ss_pred CcccC-CCCCCCCCCCCccEEEccCCcccccCChhhhhcCCC----CcEEEccCCcCCccCCccccCcccCcEEEccCcc
Q 001036 626 DSLAG-PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPS----LVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 700 (1180)
Q Consensus 626 n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~----L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 700 (1180)
|.+++ .+|..+..+++|++|++++|.+++..|..+.. +++ +.+|++++|.+++..+..+... +|+.|++++|.
T Consensus 138 n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~ 215 (606)
T 3vq2_A 138 NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF-LRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNF 215 (606)
T ss_dssp SCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH-HHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCC
T ss_pred CcccceechHhHhhcCCCCEEEccCCcceecChhhhhh-hhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCc
Confidence 99986 56888899999999999999998665654443 444 4589999999997777776665 89999999999
Q ss_pred cccccChhhhhcCCCCCEEEccCCcccc------cccccccCCc--cCceeec-cCCcccccCCCcCCCCCCCcEEECcC
Q 001036 701 LTGEIPDHLAMCCVNLEFLSLSNNSLKG------HIFSRIFSLR--NLRWLLL-EGNHFVGEIPQSLSKCSSLKGLYLNN 771 (1180)
Q Consensus 701 l~~~ip~~~~~~~~~L~~L~L~~n~l~~------~~~~~~~~l~--~L~~L~L-~~n~l~~~~p~~~~~l~~L~~L~l~~ 771 (1180)
+++......+..+++|+.+++..+.+.+ ..+..+..+. .++.+++ ..|.+.+..|. +..+++|+.|++++
T Consensus 216 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~ 294 (606)
T 3vq2_A 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAG 294 (606)
T ss_dssp SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEES
T ss_pred cchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecC
Confidence 8755555555789999988886554432 1122222222 4666777 77888888887 88999999999999
Q ss_pred CcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccc--c
Q 001036 772 NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQ--L 849 (1180)
Q Consensus 772 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~--~ 849 (1180)
|.+. .+| ++..+++|++|++++|.+ +.+| .+ .+++|+.|++++|+..+.++ ....++|++|++++|.+++. +
T Consensus 295 ~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~~~~~ 368 (606)
T 3vq2_A 295 VSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISFK-KVALPSLSYLDLSRNALSFSGCC 368 (606)
T ss_dssp CCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEECC-CCCCTTCCEEECCSSCEEEEEEC
T ss_pred ccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccchh-hccCCCCCEEECcCCccCCCcch
Confidence 9996 566 888999999999999999 6778 45 89999999999997666553 33567899999999998865 3
Q ss_pred CcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCC-ccccCCCCCCEEECcCCcCcccCCCCccC
Q 001036 850 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDLSDNNLHGLIPSCFDN 928 (1180)
Q Consensus 850 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 928 (1180)
|. .+..+++|+.|++++|.+++ +|..+.++++|++|++++|++.+..| ..+..+++|++|++++|++++..|..+++
T Consensus 369 ~~-~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 446 (606)
T 3vq2_A 369 SY-SDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446 (606)
T ss_dssp CH-HHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred hh-hhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC
Confidence 55 78899999999999999985 66889999999999999999998888 68999999999999999999988888766
Q ss_pred cccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccC-CCCccccCCC
Q 001036 929 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG-HIPPQIGNLT 1007 (1180)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~~p~~~~~l~ 1007 (1180)
++ .|+.|++++|++++ .+|..|++++
T Consensus 447 l~-----------------------------------------------------~L~~L~l~~n~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 447 LT-----------------------------------------------------SLNTLKMAGNSFKDNTLSNVFANTT 473 (606)
T ss_dssp CT-----------------------------------------------------TCCEEECTTCEEGGGEECSCCTTCT
T ss_pred CC-----------------------------------------------------CCCEEECCCCcCCCcchHHhhccCC
Confidence 44 79999999999998 4788999999
Q ss_pred CCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccccc-cCCcccc
Q 001036 1008 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFA-TFNKSSY 1086 (1180)
Q Consensus 1008 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~-~~~~~~~ 1086 (1180)
+|++|+|++|++++.+|..|+++++|+.|+|++|++++.+|..+..+++|+.|++++|+++ .+|..+..+. ++...++
T Consensus 474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l 552 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNL 552 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEEC
T ss_pred CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEc
Confidence 9999999999999999999999999999999999999999999999999999999999999 5666566665 4888899
Q ss_pred CCCCCCCCCCCC
Q 001036 1087 DGNPFLCGLPLP 1098 (1180)
Q Consensus 1087 ~~N~~lc~~~l~ 1098 (1180)
.+||+.|+|+..
T Consensus 553 ~~N~~~c~c~~~ 564 (606)
T 3vq2_A 553 TNNSVACICEHQ 564 (606)
T ss_dssp CSCCCCCSSTTH
T ss_pred cCCCcccCCccH
Confidence 999999999865
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.4e-49 Score=486.85 Aligned_cols=502 Identities=21% Similarity=0.186 Sum_probs=334.4
Q ss_pred ccCCCCCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCC
Q 001036 461 GLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHS 540 (1180)
Q Consensus 461 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~ 540 (1180)
.+..+++|++|++++|.+.+..|..|+++++|++|++++|.+++.. +..+.++++|++|++++|.+++ ++...+.+++
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~ 129 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA-ETALSGPKALKHLFFIQTGISS-IDFIPLHNQK 129 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEEC-TTTTSSCTTCCEEECTTSCCSC-GGGSCCTTCT
T ss_pred HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccC-hhhhcccccccEeeccccCccc-CCcchhccCC
Confidence 4566677777777777777766777777777777777777776433 5667777777777777777663 2233466677
Q ss_pred CCcEEecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCccc-
Q 001036 541 KLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLE- 619 (1180)
Q Consensus 541 ~L~~l~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~- 619 (1180)
+|++|++++|.+.+... |.+.. +++|+.|++++|.+.+..|.. +..+++|+
T Consensus 130 ~L~~L~L~~n~l~~~~~--------------------------~~~~~-l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~ 181 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKL--------------------------PKGFP-TEKLKVLDFQNNAIHYLSKED-MSSLQQATN 181 (606)
T ss_dssp TCCEEECCSSCCCCCCC--------------------------CTTCC-CTTCCEEECCSSCCCEECHHH-HHTTTTCCS
T ss_pred cccEEECCCCcccccCc--------------------------ccccC-CcccCEEEcccCcccccChhh-hhhhcccce
Confidence 77777777776553221 11111 455666666666666544443 45677777
Q ss_pred -EEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccC
Q 001036 620 -FLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSN 698 (1180)
Q Consensus 620 -~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~ 698 (1180)
.|++++|.+++..+..+.. ..|+.|++++|.. ++..+. .+..+....+....+.+ +...
T Consensus 182 l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~-~l~~~~l~~l~~~~~~~-----------~~~~---- 241 (606)
T 3t6q_A 182 LSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVIFK-GLKNSTIQSLWLGTFED-----------MDDE---- 241 (606)
T ss_dssp EEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHHHH-HTTTCEEEEEECCCCTT-----------SCCC----
T ss_pred eEEecCCCccCccChhHhhh-ccccccccCCchh---HHHHhh-hccccchhheechhhcc-----------cccc----
Confidence 6777777777665555433 5677777777652 222222 24444433332222211 0000
Q ss_pred cccccccChhhhhcC--CCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCC
Q 001036 699 NKLTGEIPDHLAMCC--VNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG 776 (1180)
Q Consensus 699 n~l~~~ip~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 776 (1180)
.++...+.++ .+|+.|++++|.+++..+..|..+++|++|++++|.++ .+|..+.++++|++|++++|.+.+
T Consensus 242 -----~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~ 315 (606)
T 3t6q_A 242 -----DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN 315 (606)
T ss_dssp -----CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSB
T ss_pred -----ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCc
Confidence 1111111111 14555555555555555555555555555555555555 445555555555555555555554
Q ss_pred CCcccccCCCCCCeEEccCCcCCCCCCcc-ccCCCCCCEEEccCCcccccC--CCCc-CCCcccEEEcCCcccccccCcc
Q 001036 777 KIPRWLGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNISGSL--PSCF-YPLSIKQVHLSKNMLHGQLKEG 852 (1180)
Q Consensus 777 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~--p~~~-~~~~L~~L~l~~n~~~~~~~~~ 852 (1180)
..|..++.+++|++|++++|.+.+.+|.. +..+++|++|++++|++++.. |..+ ..++|++|++++|.+.+..|.
T Consensus 316 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~- 394 (606)
T 3t6q_A 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE- 394 (606)
T ss_dssp GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT-
T ss_pred CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH-
Confidence 44555555555555555555555444332 555555666666665555443 3322 234566666666665554444
Q ss_pred cccCCCCCcEEECcCccCccccch-hhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccC-C--CCccC
Q 001036 853 TFFNCSSLVTLDLSYNYLNGSIPD-WIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI-P--SCFDN 928 (1180)
Q Consensus 853 ~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p--~~~~~ 928 (1180)
.|.++++|+.|++++|++++..|. .+..+++|++|++++|.+.+..|..+..+++|++|++++|++++.. | ..+..
T Consensus 395 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 474 (606)
T 3t6q_A 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474 (606)
T ss_dssp TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG
T ss_pred HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc
Confidence 788899999999999999877654 4899999999999999999988999999999999999999998732 2 22332
Q ss_pred cccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCC
Q 001036 929 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTR 1008 (1180)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~ 1008 (1180)
++.|+.|++++|++++.+|..|+++++
T Consensus 475 -----------------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 501 (606)
T 3t6q_A 475 -----------------------------------------------------LGRLEILVLSFCDLSSIDQHAFTSLKM 501 (606)
T ss_dssp -----------------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred -----------------------------------------------------CCCccEEECCCCccCccChhhhccccC
Confidence 447999999999999999999999999
Q ss_pred CCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCC
Q 001036 1009 IQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus 1009 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
|+.|+|++|++++.+|+.|++++.| .||+++|++++.+|..+..+++|+.+++++|++++.++.
T Consensus 502 L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 502 MNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 9999999999999999999999999 999999999999999999999999999999999998773
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.3e-48 Score=479.02 Aligned_cols=516 Identities=21% Similarity=0.189 Sum_probs=375.2
Q ss_pred CCcceeeeccCcccCCCCccccccccCCCCCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCC
Q 001036 437 MPSLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTS 516 (1180)
Q Consensus 437 ~~~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~ 516 (1180)
.+.++.++++++.+.. ..+..+..+++|++|++++|.+++..|..|+++++|++|++++|.+++. ++..+.++++
T Consensus 31 ~~~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~ 105 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKI----LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTS 105 (606)
T ss_dssp CTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC-CTTSSTTCTT
T ss_pred CCCcCEEECCCCCcCE----eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc-ChhhcCCccc
Confidence 4789999999988743 3345788899999999999999998899999999999999999999854 4788999999
Q ss_pred CCEEEccCCccccccCcccccCCCCCcEEecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEE
Q 001036 517 IEELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEA 596 (1180)
Q Consensus 517 L~~L~L~~n~l~~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l 596 (1180)
|++|++++|.+.+ ++...+.++++|++|++++|.+.+ ..+|..+.++++|+.|
T Consensus 106 L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~--------------------------~~lp~~~~~l~~L~~L 158 (606)
T 3vq2_A 106 LENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHS--------------------------CKLPAYFSNLTNLVHV 158 (606)
T ss_dssp CCEEECTTSCCCC-SSSSCCTTCTTCCEEECCSSCCCC--------------------------CCCCGGGGTCTTCCEE
T ss_pred CCEEEccCCcccc-ccccccCCCCCCCEEeCCCCcccc--------------------------eechHhHhhcCCCCEE
Confidence 9999999999974 443457888888888888776542 2356667777888888
Q ss_pred EcCCCcccccCChhhhhcCCcc----cEEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEc
Q 001036 597 ELSHIKMIGEFPNWLLENNTKL----EFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNI 672 (1180)
Q Consensus 597 ~l~~~~~~~~~p~~~~~~~~~L----~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l 672 (1180)
++++|.+.+..|.. +..+++| ..+++++|.+++..+..+... +|+.|++++|.+.+.........++.++.+++
T Consensus 159 ~Ls~n~l~~~~~~~-~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l 236 (606)
T 3vq2_A 159 DLSYNYIQTITVND-LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236 (606)
T ss_dssp ECCSSCCCEECTTT-THHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEE
T ss_pred EccCCcceecChhh-hhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccc
Confidence 88888877765544 3344444 367777777766555544444 67777777776654333333334666666666
Q ss_pred cCCcCCcc------CCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEc-cCCcccccccccccCCccCceeec
Q 001036 673 SMNALDGS------IPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSL-SNNSLKGHIFSRIFSLRNLRWLLL 745 (1180)
Q Consensus 673 s~n~l~~~------~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L 745 (1180)
..+.+.+. .+..+.++.. ..++.+++ ..|.+.+..|. +..+++|+.|++
T Consensus 237 ~~~~~~~~~~l~~~~~~~~~~l~~-----------------------l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l 292 (606)
T 3vq2_A 237 ILGEFKDERNLEIFEPSIMEGLCD-----------------------VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSL 292 (606)
T ss_dssp EEECCTTSCCCSCCCGGGGTTGGG-----------------------SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEE
T ss_pred cccccccCCcccccChHHhhhhhh-----------------------ccHhheeccccccccccccc-cccCCCCCEEEe
Confidence 54433321 1111111111 12344444 44445554444 555555555555
Q ss_pred cCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCccccc
Q 001036 746 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGS 825 (1180)
Q Consensus 746 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 825 (1180)
++|.+.. +| .+..+++|++|++++|.+ +.+|. + .+++|++|++++|+..+.+ .+..+++|++|++++|++++.
T Consensus 293 ~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~ 365 (606)
T 3vq2_A 293 AGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFS 365 (606)
T ss_dssp ESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEE
T ss_pred cCccchh-hh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCC
Confidence 5555542 33 455555566666666655 35553 2 5556666666655433322 344556666666666665543
Q ss_pred --CCCCc-CCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccc-hhhhcCCCCCEEecCCCccccCCCcc
Q 001036 826 --LPSCF-YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEGEVPIQ 901 (1180)
Q Consensus 826 --~p~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~ 901 (1180)
+|..+ ...+|++|++++|.+.+ +|. .+.++++|+.|++++|++++..| ..+.++++|++|++++|++.+..|..
T Consensus 366 ~~~~~~~~~~~~L~~L~L~~n~l~~-~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 443 (606)
T 3vq2_A 366 GCCSYSDLGTNSLRHLDLSFNGAII-MSA-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443 (606)
T ss_dssp EECCHHHHCCSCCCEEECCSCSEEE-ECC-CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred cchhhhhccCCcccEeECCCCcccc-chh-hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhh
Confidence 13222 23456666666666553 554 78899999999999999998888 78999999999999999999999999
Q ss_pred ccCCCCCCEEECcCCcCcc-cCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccch
Q 001036 902 LCRLNQLQLLDLSDNNLHG-LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGR 980 (1180)
Q Consensus 902 ~~~l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 980 (1180)
+..+++|++|++++|++++ .+|..|+.++
T Consensus 444 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-------------------------------------------------- 473 (606)
T 3vq2_A 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTT-------------------------------------------------- 473 (606)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCT--------------------------------------------------
T ss_pred hcCCCCCCEEECCCCcCCCcchHHhhccCC--------------------------------------------------
Confidence 9999999999999999998 4677776644
Q ss_pred hccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCC-CCCE
Q 001036 981 VLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN-TLAI 1059 (1180)
Q Consensus 981 ~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~-~L~~ 1059 (1180)
.|+.|||++|++++.+|..|+++++|++|+|++|++++.+|..|+++++|+.|||++|+++ .+|..+..++ +|++
T Consensus 474 ---~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~ 549 (606)
T 3vq2_A 474 ---NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAF 549 (606)
T ss_dssp ---TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCE
T ss_pred ---CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcE
Confidence 7999999999999999999999999999999999999999999999999999999999999 7888899997 5999
Q ss_pred EEcCCCcCcccCCC
Q 001036 1060 FIVAYNNLSGKIPE 1073 (1180)
Q Consensus 1060 l~ls~N~l~g~ip~ 1073 (1180)
+++++|++.+..|.
T Consensus 550 l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 550 FNLTNNSVACICEH 563 (606)
T ss_dssp EECCSCCCCCSSTT
T ss_pred EEccCCCcccCCcc
Confidence 99999999998774
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5e-45 Score=447.67 Aligned_cols=491 Identities=21% Similarity=0.253 Sum_probs=353.0
Q ss_pred CCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcEE
Q 001036 466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF 545 (1180)
Q Consensus 466 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l 545 (1180)
++++.|++++|.+++..+..|..+++|++|++++|+++ .+++..+.++++|++|++++|.++. ++...|.++++|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCccccccc
Confidence 46888899988888877778888888999999888887 4556778888888888888888763 444557777777777
Q ss_pred ecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccC
Q 001036 546 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN 625 (1180)
Q Consensus 546 ~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~ 625 (1180)
++++|.+...... .+.++++|++|++++
T Consensus 106 ~L~~n~l~~l~~~----------------------------------------------------~~~~l~~L~~L~L~~ 133 (570)
T 2z63_A 106 VAVETNLASLENF----------------------------------------------------PIGHLKTLKELNVAH 133 (570)
T ss_dssp ECTTSCCCCSTTC----------------------------------------------------SCTTCTTCCEEECCS
T ss_pred cccccccccCCCc----------------------------------------------------cccccccccEEecCC
Confidence 7777765532211 023455555555555
Q ss_pred CcccC-CCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCC----cEEEccCCcCCccCCccccCcccCcEEEccCcc
Q 001036 626 DSLAG-PFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSL----VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 700 (1180)
Q Consensus 626 n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L----~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 700 (1180)
|.+++ .+|..+..+++|++|++++|.+++..|..+.. +++| +.+++++|.+++..|..+... +|+.|++++|.
T Consensus 134 n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~ 211 (570)
T 2z63_A 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNF 211 (570)
T ss_dssp SCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH-HHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCC
T ss_pred CccceecChhhhcccCCCCEEeCcCCccceecHHHccc-hhccchhhhhcccCCCCceecCHHHhccC-cceeEeccccc
Confidence 55554 23455556666677777777666444443333 5555 677777777777777766655 67777777775
Q ss_pred cccccChhhhhcCCCCCEEEccCCcc------cccccccccCCc--cCceeeccCC-cccccCCCcCCCCCCCcEEECcC
Q 001036 701 LTGEIPDHLAMCCVNLEFLSLSNNSL------KGHIFSRIFSLR--NLRWLLLEGN-HFVGEIPQSLSKCSSLKGLYLNN 771 (1180)
Q Consensus 701 l~~~ip~~~~~~~~~L~~L~L~~n~l------~~~~~~~~~~l~--~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~l~~ 771 (1180)
.....-......++.++...+....+ .......+..++ .++.++++++ .+.+..|..+..+++|+.|++++
T Consensus 212 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 291 (570)
T 2z63_A 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291 (570)
T ss_dssp SCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEES
T ss_pred ccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecC
Confidence 43222222334566666655543222 112222333333 3566677776 67777778888888888888888
Q ss_pred CcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCccccccc--
Q 001036 772 NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQL-- 849 (1180)
Q Consensus 772 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~-- 849 (1180)
|.+. .+|.++..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ...++|+.|++++|.+.+..
T Consensus 292 ~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~ 365 (570)
T 2z63_A 292 VTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCC 365 (570)
T ss_dssp CEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEE
T ss_pred ccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccc
Confidence 8887 577777777 8888888888887 4554 4677888888888888766655 45567788888888776543
Q ss_pred CcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCC-ccccCCCCCCEEECcCCcCcccCCCCccC
Q 001036 850 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDLSDNNLHGLIPSCFDN 928 (1180)
Q Consensus 850 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 928 (1180)
+. .+.++++|+.|++++|.+++..+. +..+++|++|++++|.+.+..| ..+..+++|++|++++|++++..|..|..
T Consensus 366 ~~-~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 443 (570)
T 2z63_A 366 SQ-SDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443 (570)
T ss_dssp EH-HHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred cc-cccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc
Confidence 34 677888888888888888865554 8888888888888888887665 46788888888888888888877777655
Q ss_pred cccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCccc-CCCCccccCCC
Q 001036 929 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV-GHIPPQIGNLT 1007 (1180)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-g~~p~~~~~l~ 1007 (1180)
++ .|+.|++++|+++ +.+|..++.++
T Consensus 444 l~-----------------------------------------------------~L~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 444 LS-----------------------------------------------------SLEVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp CT-----------------------------------------------------TCCEEECTTCEEGGGEECSCCTTCT
T ss_pred CC-----------------------------------------------------cCcEEECcCCcCccccchhhhhccc
Confidence 43 6888888888887 57888888888
Q ss_pred CCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCC
Q 001036 1008 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus 1008 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
+|++|+|++|++++..|..|+++++|+.|++++|++++.+|..+..+++|+.|++++|+++|.+|.
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 888888888888888888888888888888888888888888888888888888888888888875
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.9e-46 Score=457.62 Aligned_cols=380 Identities=21% Similarity=0.278 Sum_probs=242.0
Q ss_pred CcccccCChhhhhcCCCCcEEEccCCcCCcc-----------------CCcccc--CcccCcEEEccCcccccccChhhh
Q 001036 650 NNFQGHIPVEIGDILPSLVYFNISMNALDGS-----------------IPSSFG--NVIFLQFLDLSNNKLTGEIPDHLA 710 (1180)
Q Consensus 650 n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~-----------------~p~~~~--~l~~L~~L~l~~n~l~~~ip~~~~ 710 (1180)
|.++| +|..++. +++|++|++++|.+++. +|..++ ++++|++|++++|++.+.+|..+
T Consensus 193 n~l~~-ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l- 269 (636)
T 4eco_A 193 NNITF-VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL- 269 (636)
T ss_dssp CEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-
T ss_pred CCCcc-CCHHHhc-ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-
Confidence 44444 5544443 45555555555555543 555555 55555555555555555555444
Q ss_pred hcCCCCCEEEccCCc-ccc-cccccccCC------ccCceeeccCCcccccCCC--cCCCCCCCcEEECcCCcCCCCCcc
Q 001036 711 MCCVNLEFLSLSNNS-LKG-HIFSRIFSL------RNLRWLLLEGNHFVGEIPQ--SLSKCSSLKGLYLNNNNLSGKIPR 780 (1180)
Q Consensus 711 ~~~~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~ 780 (1180)
.++++|++|++++|+ +++ .+|..++.+ ++|++|++++|+++ .+|. .++++++|++|++++|+++|.+|
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP- 347 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-
Confidence 245555555555555 555 455554444 55555555555555 4555 55555555555555555555555
Q ss_pred cccCCCCCCeEEccCCcCCCCCCccccCCCC-CCEEEccCCcccccCCCCcCCC---cccEEEcCCcccccccCccccc-
Q 001036 781 WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS-LQILDISDNNISGSLPSCFYPL---SIKQVHLSKNMLHGQLKEGTFF- 855 (1180)
Q Consensus 781 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~~---~L~~L~l~~n~~~~~~~~~~~~- 855 (1180)
.++.+++|++|++++|+++ .+|..+..+++ |++|++++|+++ .+|..+... +|+.|++++|.+.+.+|. .+.
T Consensus 348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~ 424 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK-NFDP 424 (636)
T ss_dssp CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC-SSCT
T ss_pred hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchh-hhcc
Confidence 5555555555555555555 45555555555 666666666555 455444322 455555555555555554 444
Q ss_pred ------CCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCcc-ccCC-------CCCCEEECcCCcCccc
Q 001036 856 ------NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQ-LCRL-------NQLQLLDLSDNNLHGL 921 (1180)
Q Consensus 856 ------~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~l-------~~L~~L~Ls~N~l~~~ 921 (1180)
.+++|+.|++++|.+++..+..+..+++|++|+|++|+++ .+|.. +... ++|++|+|++|+++ .
T Consensus 425 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ 502 (636)
T 4eco_A 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-K 502 (636)
T ss_dssp TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-B
T ss_pred cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-c
Confidence 6678889999999988555556677888999999999888 55544 3333 28999999999988 5
Q ss_pred CCCCcc--CcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCC
Q 001036 922 IPSCFD--NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI 999 (1180)
Q Consensus 922 ~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~ 999 (1180)
+|..+. . ++.|+.|||++|++++ +
T Consensus 503 lp~~~~~~~-----------------------------------------------------l~~L~~L~Ls~N~l~~-i 528 (636)
T 4eco_A 503 LSDDFRATT-----------------------------------------------------LPYLVGIDLSYNSFSK-F 528 (636)
T ss_dssp CCGGGSTTT-----------------------------------------------------CTTCCEEECCSSCCSS-C
T ss_pred cChhhhhcc-----------------------------------------------------CCCcCEEECCCCCCCC-c
Confidence 565543 3 3378889999999987 8
Q ss_pred CccccCCCCCCEEeC------ccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCC
Q 001036 1000 PPQIGNLTRIQTLNL------SHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus 1000 p~~~~~l~~L~~L~L------s~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
|..++++++|+.|+| ++|++.+.+|..|+++++|+.|||++|++ +.+|..+. +.|+.||+++|++...-+.
T Consensus 529 p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~~~ 605 (636)
T 4eco_A 529 PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISIDLS 605 (636)
T ss_dssp CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEECT
T ss_pred ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccccHH
Confidence 888889999999999 56888999999999999999999999999 68888876 7899999999977643322
Q ss_pred cccc--cccCCccccCCCCCCCCCC
Q 001036 1074 WTAQ--FATFNKSSYDGNPFLCGLP 1096 (1180)
Q Consensus 1074 ~~~~--~~~~~~~~~~~N~~lc~~~ 1096 (1180)
.... ........+..+...|+|+
T Consensus 606 ~~~~~~~~~~~~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 606 YVCPYIEAGMYMLFYDKTQDIRGCD 630 (636)
T ss_dssp TTHHHHHTTCCEEECCTTSEEESCG
T ss_pred hcchhhhcccceeecCCccccCCCc
Confidence 1111 1122233344555566654
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.6e-44 Score=437.19 Aligned_cols=486 Identities=21% Similarity=0.187 Sum_probs=375.9
Q ss_pred EEecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEc
Q 001036 544 IFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYL 623 (1180)
Q Consensus 544 ~l~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l 623 (1180)
.+++++..+..++... ...++.|++++|.... ..+..+..+++|++|++++|.+.+..| ..+.++++|++|++
T Consensus 11 ~~~c~~~~l~~ip~~l-----~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L 83 (570)
T 2z63_A 11 TYQCMELNFYKIPDNL-----PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLIL 83 (570)
T ss_dssp EEECCSSCCSSCCSSS-----CSSCCEEECCSCCCCE-ECTTTTTTCSSCCEEECTTCCCCEECT-TTTTTCTTCCEEEC
T ss_pred EEEeCCCCccccCCCc-----cccccEEEccCCccCc-cChhHhhCCCCceEEECCCCcCCccCc-ccccCchhCCEEeC
Confidence 4555555554443321 1357778886665432 234456677778888888877665433 33567788888888
Q ss_pred cCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCc-cCCccccCcccCcEEEccCcccc
Q 001036 624 VNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG-SIPSSFGNVIFLQFLDLSNNKLT 702 (1180)
Q Consensus 624 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~ 702 (1180)
++|.+++..+..+..+++|++|++++|.++ .+|...+..+++|++|++++|.+++ .+|..|+++++|++|++++|+++
T Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 84 TGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred cCCcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 888877777777777888888888888777 3443223347788888888887776 35777888888888888888777
Q ss_pred cccChhhhhcCCCC----CEEEccCCcccccccccccCCccCceeeccCCcccc--------------------------
Q 001036 703 GEIPDHLAMCCVNL----EFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVG-------------------------- 752 (1180)
Q Consensus 703 ~~ip~~~~~~~~~L----~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------------------- 752 (1180)
+ ++...+..+++| +.+++++|.+++..+..+... +|+.|++++|....
T Consensus 163 ~-~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~ 240 (570)
T 2z63_A 163 S-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240 (570)
T ss_dssp E-ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC
T ss_pred e-ecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc
Confidence 4 333333456666 778888888877777666555 67777777763221
Q ss_pred -----cCCCcCCCCC--CCcEEECcCC-cCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccc
Q 001036 753 -----EIPQSLSKCS--SLKGLYLNNN-NLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG 824 (1180)
Q Consensus 753 -----~~p~~~~~l~--~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 824 (1180)
.....+.+++ .++.++++++ .+.+..|..+..+++|+.|++++|.+. .+|..+..+ +|+.|++++|.+.
T Consensus 241 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~- 317 (570)
T 2z63_A 241 GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG- 317 (570)
T ss_dssp SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-
T ss_pred hhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-
Confidence 0111112221 2345555555 566778888999999999999999998 578888888 9999999999998
Q ss_pred cCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCcccc--chhhhcCCCCCEEecCCCccccCCCccc
Q 001036 825 SLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI--PDWIDGLSQLSHLNLAHNNLEGEVPIQL 902 (1180)
Q Consensus 825 ~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 902 (1180)
.+|. ...++|+.|++++|.+.+.++. ..+++|+.|++++|.+++.. |..+.++++|++|++++|.+.+..+. +
T Consensus 318 ~l~~-~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~ 392 (570)
T 2z63_A 318 QFPT-LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-F 392 (570)
T ss_dssp SCCB-CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-E
T ss_pred ccCc-ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-c
Confidence 6665 3567899999999998876654 67899999999999998765 78899999999999999999865554 9
Q ss_pred cCCCCCCEEECcCCcCcccCC-CCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchh
Q 001036 903 CRLNQLQLLDLSDNNLHGLIP-SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRV 981 (1180)
Q Consensus 903 ~~l~~L~~L~Ls~N~l~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 981 (1180)
..+++|++|++++|++++..| ..|.+
T Consensus 393 ~~l~~L~~L~l~~n~l~~~~~~~~~~~----------------------------------------------------- 419 (570)
T 2z63_A 393 LGLEQLEHLDFQHSNLKQMSEFSVFLS----------------------------------------------------- 419 (570)
T ss_dssp ETCTTCCEEECTTSEEESCTTSCTTTT-----------------------------------------------------
T ss_pred cccCCCCEEEccCCccccccchhhhhc-----------------------------------------------------
Confidence 999999999999999998766 34444
Q ss_pred ccccceEEccCCcccCCCCccccCCCCCCEEeCcccccc-ccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEE
Q 001036 982 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT-GTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIF 1060 (1180)
Q Consensus 982 l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l 1060 (1180)
+++|+.|++++|++++.+|..+.++++|++|++++|+++ +.+|..|+.+++|+.|++++|++++..|..+..+++|++|
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 337999999999999999999999999999999999998 7899999999999999999999999999999999999999
Q ss_pred EcCCCcCcccCCCcccccccCCccccCCCCCCCCCCCCCC
Q 001036 1061 IVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLPIC 1100 (1180)
Q Consensus 1061 ~ls~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~l~~c 1100 (1180)
++++|++++.+|..+..+..+...++.+||+.|.||..++
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence 9999999999888778888999999999999999986543
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.9e-44 Score=445.38 Aligned_cols=381 Identities=20% Similarity=0.240 Sum_probs=318.2
Q ss_pred CCcccccCChhhhhcCCCCcEEEccCCcCCc-----------------cCCcccc--CcccCcEEEccCcccccccChhh
Q 001036 649 NNNFQGHIPVEIGDILPSLVYFNISMNALDG-----------------SIPSSFG--NVIFLQFLDLSNNKLTGEIPDHL 709 (1180)
Q Consensus 649 ~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~-----------------~~p~~~~--~l~~L~~L~l~~n~l~~~ip~~~ 709 (1180)
.|.+++ +|..+.. +++|++|++++|.+++ .+|..++ ++++|++|++++|++.+.+|..+
T Consensus 434 ~N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l 511 (876)
T 4ecn_A 434 TNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511 (876)
T ss_dssp SCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG
T ss_pred cCcccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH
Confidence 378886 8988776 8999999999999998 3888877 99999999999999998999766
Q ss_pred hhcCCCCCEEEccCCc-ccc-cccccccCCc-------cCceeeccCCcccccCCC--cCCCCCCCcEEECcCCcCCCCC
Q 001036 710 AMCCVNLEFLSLSNNS-LKG-HIFSRIFSLR-------NLRWLLLEGNHFVGEIPQ--SLSKCSSLKGLYLNNNNLSGKI 778 (1180)
Q Consensus 710 ~~~~~~L~~L~L~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~ 778 (1180)
..+++|+.|++++|+ +++ .+|..++.++ +|++|++++|.++ .+|. .++++++|+.|++++|+++ .+
T Consensus 512 -~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~l 588 (876)
T 4ecn_A 512 -YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HL 588 (876)
T ss_dssp -GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BC
T ss_pred -hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cc
Confidence 479999999999998 888 7888776665 9999999999999 7888 8999999999999999998 88
Q ss_pred cccccCCCCCCeEEccCCcCCCCCCccccCCCC-CCEEEccCCcccccCCCCcCCC---cccEEEcCCcccccccCcc--
Q 001036 779 PRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS-LQILDISDNNISGSLPSCFYPL---SIKQVHLSKNMLHGQLKEG-- 852 (1180)
Q Consensus 779 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~~---~L~~L~l~~n~~~~~~~~~-- 852 (1180)
| .++.+++|+.|++++|+++ .+|..+..+++ |+.|++++|+++ .+|..+... +|+.|++++|.+.+.+|.-
T Consensus 589 p-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~ 665 (876)
T 4ecn_A 589 E-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665 (876)
T ss_dssp C-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS
T ss_pred h-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchh
Confidence 8 8999999999999999998 88888999998 999999999998 788776543 4999999999998876641
Q ss_pred ccc--CCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCC--------CCCCEEECcCCcCcccC
Q 001036 853 TFF--NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRL--------NQLQLLDLSDNNLHGLI 922 (1180)
Q Consensus 853 ~~~--~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l--------~~L~~L~Ls~N~l~~~~ 922 (1180)
.+. .+++|+.|++++|.++...+..+..+++|+.|+|++|+++ .+|..+... ++|+.|+|++|+++ .+
T Consensus 666 ~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~l 743 (876)
T 4ecn_A 666 SMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL 743 (876)
T ss_dssp CTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CC
T ss_pred hhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cc
Confidence 122 4468999999999999544445568999999999999999 666654433 38999999999999 56
Q ss_pred CCCcc--CcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCC
Q 001036 923 PSCFD--NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP 1000 (1180)
Q Consensus 923 p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p 1000 (1180)
|..+. . ++.|+.|||++|+|++ +|
T Consensus 744 p~~l~~~~-----------------------------------------------------l~~L~~L~Ls~N~L~~-lp 769 (876)
T 4ecn_A 744 SDDFRATT-----------------------------------------------------LPYLSNMDVSYNCFSS-FP 769 (876)
T ss_dssp CGGGSTTT-----------------------------------------------------CTTCCEEECCSSCCSS-CC
T ss_pred hHHhhhcc-----------------------------------------------------CCCcCEEEeCCCCCCc-cc
Confidence 65553 3 3479999999999997 89
Q ss_pred ccccCCCCCCEEeCcc------ccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCc
Q 001036 1001 PQIGNLTRIQTLNLSH------NNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 1074 (1180)
Q Consensus 1001 ~~~~~l~~L~~L~Ls~------N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~ 1074 (1180)
..++++++|+.|+|++ |++.+.+|..|+++++|+.|+|++|++ +.+|..+. ++|+.||+++|++...-+..
T Consensus 770 ~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~ 846 (876)
T 4ecn_A 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTS 846 (876)
T ss_dssp CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGG
T ss_pred hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHH
Confidence 9999999999999976 889999999999999999999999999 79999876 69999999999998655543
Q ss_pred ccccccCCccccCCCCCCC--CCC
Q 001036 1075 TAQFATFNKSSYDGNPFLC--GLP 1096 (1180)
Q Consensus 1075 ~~~~~~~~~~~~~~N~~lc--~~~ 1096 (1180)
+..........+.+|+..+ ||+
T Consensus 847 ~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 847 VCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp GHHHHHTTCCEEECCTTSEEESCG
T ss_pred ccccccchheeecCCCccccCCCC
Confidence 4333334445556665544 664
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.5e-44 Score=434.66 Aligned_cols=397 Identities=19% Similarity=0.207 Sum_probs=291.9
Q ss_pred hhcCCcccEEEccCCcccCC-CCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCccc
Q 001036 612 LENNTKLEFLYLVNDSLAGP-FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIF 690 (1180)
Q Consensus 612 ~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~ 690 (1180)
+.++++|++|++++|.+++. .+..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+++..|..++.+++
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 34556666666666666542 34456677777777777777555666544445778888888888888777888888888
Q ss_pred CcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccc---cccccCCccCceeeccCCcccccCC----CcCCCCCC
Q 001036 691 LQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI---FSRIFSLRNLRWLLLEGNHFVGEIP----QSLSKCSS 763 (1180)
Q Consensus 691 L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~ 763 (1180)
|+.|++++|.+. .+|..++..+++|++|++++|++++.. ......+++|+.|++++|.+++..+ ..+..+++
T Consensus 174 L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~ 252 (549)
T 2z81_A 174 IHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252 (549)
T ss_dssp EEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTT
T ss_pred CceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcc
Confidence 888888888775 667666666788888888888877642 1223456778888888887765433 23456677
Q ss_pred CcEEECcCCcCCCCC------cccccCCCCCCeEEccCCcCCCC-----CCccccCCCCCCEEEccCCcccccCCCCc--
Q 001036 764 LKGLYLNNNNLSGKI------PRWLGNLKGLQHIVMPKNHLEGP-----IPVEFCRLDSLQILDISDNNISGSLPSCF-- 830 (1180)
Q Consensus 764 L~~L~l~~n~l~~~~------p~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-- 830 (1180)
|+.+++++|.+.+.. ...+..+++|+.|++.++.+... ++..+...++|+.|++++|++. .+|..+
T Consensus 253 L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~ 331 (549)
T 2z81_A 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQ 331 (549)
T ss_dssp CCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHH
T ss_pred ccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHh
Confidence 888888887765421 12345667788888877765432 1222334567888888888876 566554
Q ss_pred CCCcccEEEcCCcccccccCc--ccccCCCCCcEEECcCccCccccc--hhhhcCCCCCEEecCCCccccCCCccccCCC
Q 001036 831 YPLSIKQVHLSKNMLHGQLKE--GTFFNCSSLVTLDLSYNYLNGSIP--DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLN 906 (1180)
Q Consensus 831 ~~~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 906 (1180)
...+|++|++++|.+.+.+|. ..+..+++|+.|++++|++++..+ ..++.+++|++|++++|+++ .+|..+..++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 410 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE 410 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccc
Confidence 356788888888888776653 246788999999999999986543 56888999999999999998 6788888899
Q ss_pred CCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccc
Q 001036 907 QLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA 986 (1180)
Q Consensus 907 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 986 (1180)
+|++|++++|++++. |..+ .+.|+
T Consensus 411 ~L~~L~Ls~N~l~~l-~~~~-------------------------------------------------------~~~L~ 434 (549)
T 2z81_A 411 KMRFLNLSSTGIRVV-KTCI-------------------------------------------------------PQTLE 434 (549)
T ss_dssp TCCEEECTTSCCSCC-CTTS-------------------------------------------------------CTTCS
T ss_pred cccEEECCCCCcccc-cchh-------------------------------------------------------cCCce
Confidence 999999999998743 2211 12688
Q ss_pred eEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCc
Q 001036 987 GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNN 1066 (1180)
Q Consensus 987 ~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~ 1066 (1180)
.|||++|++++.+ +++++|++|+|++|+|+ .+|. .+.+++|+.|||++|++++.+|..+..+++|+.|++++|+
T Consensus 435 ~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 435 VLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp EEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred EEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 8999999998753 57889999999999998 6776 4678999999999999999888889999999999999999
Q ss_pred CcccCCC
Q 001036 1067 LSGKIPE 1073 (1180)
Q Consensus 1067 l~g~ip~ 1073 (1180)
++|.+|.
T Consensus 509 ~~~~~~~ 515 (549)
T 2z81_A 509 WDCSCPR 515 (549)
T ss_dssp BCCCHHH
T ss_pred ccCCCcc
Confidence 9988873
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.2e-45 Score=450.39 Aligned_cols=444 Identities=18% Similarity=0.239 Sum_probs=365.7
Q ss_pred CcccEEEcCCCcccccCChhhhhcCCcccEEEccCCccc------C------CCCCCCCCCCCccEEEccCCcccccCCh
Q 001036 591 HELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLA------G------PFRLPIHSHKRLRFLDVSNNNFQGHIPV 658 (1180)
Q Consensus 591 ~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~~~------~------~~~~~~~~~~~L~~L~l~~n~l~~~ip~ 658 (1180)
..++.|+++++.+.|.+|+. +++++.|+.|++++|.+. + .+|.. .+..++ +++++|.+.+.+|.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~-l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~--~~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE--QKQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGG-GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHH--HHHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCChH-HhcCccceEEECcCCccccCCccccccccccCchHH--HHHHHH-hhHHHhhhccCchh
Confidence 35777888888888888876 468888888888888652 2 11111 134556 67777777766665
Q ss_pred hhhhcCC------------------CCcEEEcc--CCcCCccCCccccCcccCcEEEccCcccccc--------------
Q 001036 659 EIGDILP------------------SLVYFNIS--MNALDGSIPSSFGNVIFLQFLDLSNNKLTGE-------------- 704 (1180)
Q Consensus 659 ~~~~~l~------------------~L~~L~ls--~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-------------- 704 (1180)
.+...+. .++.+.+. .|++++ +|..++++++|++|++++|+++|.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence 5542221 22222222 688998 899999999999999999999975
Q ss_pred ---cChhhh-hcCCCCCEEEccCCcccccccccccCCccCceeeccCCc-ccc-cCCCcCCCC------CCCcEEECcCC
Q 001036 705 ---IPDHLA-MCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH-FVG-EIPQSLSKC------SSLKGLYLNNN 772 (1180)
Q Consensus 705 ---ip~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l------~~L~~L~l~~n 772 (1180)
+|+.+. .++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+ ++|++|++++|
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 888763 279999999999999999999999999999999999998 998 889888776 99999999999
Q ss_pred cCCCCCcc--cccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcC-CCc-ccEEEcCCcccccc
Q 001036 773 NLSGKIPR--WLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFY-PLS-IKQVHLSKNMLHGQ 848 (1180)
Q Consensus 773 ~l~~~~p~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~~~-L~~L~l~~n~~~~~ 848 (1180)
+++ .+|. .++++++|++|++++|+++|.+| .+..+++|++|++++|+++ .+|..+. ..+ |+.|++++|.+. .
T Consensus 316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~ 391 (636)
T 4eco_A 316 NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-Y 391 (636)
T ss_dssp CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-S
T ss_pred cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-c
Confidence 999 8898 89999999999999999999999 8999999999999999998 7777664 356 999999999998 7
Q ss_pred cCcccccCCC--CCcEEECcCccCccccchhhh-------cCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCc
Q 001036 849 LKEGTFFNCS--SLVTLDLSYNYLNGSIPDWID-------GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 919 (1180)
Q Consensus 849 ~~~~~~~~~~--~L~~L~L~~n~l~~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 919 (1180)
+|. .+..++ +|+.|++++|.+++.+|..|. .+++|++|++++|++++..+..+..+++|++|+|++|+++
T Consensus 392 lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 392 IPN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp CCS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred cch-hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 887 676654 899999999999999999998 8889999999999999544455667999999999999999
Q ss_pred ccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCC
Q 001036 920 GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI 999 (1180)
Q Consensus 920 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~ 999 (1180)
...+..+.... ...+.++.|+.|||++|+++ .+
T Consensus 471 ~i~~~~~~~~~----------------------------------------------~~~~~l~~L~~L~Ls~N~l~-~l 503 (636)
T 4eco_A 471 EIPKNSLKDEN----------------------------------------------ENFKNTYLLTSIDLRFNKLT-KL 503 (636)
T ss_dssp BCCSSSSEETT----------------------------------------------EECTTGGGCCEEECCSSCCC-BC
T ss_pred CcCHHHhcccc----------------------------------------------ccccccCCccEEECcCCcCC-cc
Confidence 43333333211 00012447999999999999 78
Q ss_pred Ccccc--CCCCCCEEeCccccccccccccccCCCCCCEEEC------cCCcCcccCCccccCCCCCCEEEcCCCcCcccC
Q 001036 1000 PPQIG--NLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL------SYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKI 1071 (1180)
Q Consensus 1000 p~~~~--~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L------s~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~i 1071 (1180)
|..+. .+++|+.|+|++|++++ +|..++++++|+.|+| ++|++.+.+|..+..++.|+.|++++|++ +.+
T Consensus 504 p~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~i 581 (636)
T 4eco_A 504 SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKV 581 (636)
T ss_dssp CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBC
T ss_pred ChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-Ccc
Confidence 98887 99999999999999998 9999999999999999 56889999999999999999999999999 788
Q ss_pred CCcccccccCCccccCCCCCCCCC
Q 001036 1072 PEWTAQFATFNKSSYDGNPFLCGL 1095 (1180)
Q Consensus 1072 p~~~~~~~~~~~~~~~~N~~lc~~ 1095 (1180)
|.... .++...++.+||..|-.
T Consensus 582 p~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 582 NEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CSCCC--TTCCEEECCSCTTCEEE
T ss_pred CHhHh--CcCCEEECcCCCCcccc
Confidence 87543 67888889999988854
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.5e-43 Score=427.77 Aligned_cols=467 Identities=20% Similarity=0.212 Sum_probs=342.1
Q ss_pred CCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcEE
Q 001036 466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF 545 (1180)
Q Consensus 466 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l 545 (1180)
++|++|++++|.+++..|..|.++++|++|++++|++++ +++..+.++++|++|++++|.+++ ++...+.++++|++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEE
Confidence 689999999999988888889999999999999999884 446788899999999999998874 444557888888888
Q ss_pred ecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccC
Q 001036 546 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN 625 (1180)
Q Consensus 546 ~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~ 625 (1180)
++++|.+... ..|..+..+++|++|++++|...+.+|...+.++++|+.|++++
T Consensus 104 ~Ls~n~l~~~--------------------------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 104 NLMGNPYQTL--------------------------GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp ECTTCCCSSS--------------------------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred ECCCCccccc--------------------------chhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence 8888876532 22344566778888888888877778766677899999999999
Q ss_pred CcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccC--C-ccccCcccCcEEEccCcccc
Q 001036 626 DSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSI--P-SSFGNVIFLQFLDLSNNKLT 702 (1180)
Q Consensus 626 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~--p-~~~~~l~~L~~L~l~~n~l~ 702 (1180)
|.+++..+..+..+++|++|+++.|.+. .+|..+...+++|++|++++|.+++.. | .....+++|+.|++++|.++
T Consensus 158 n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 236 (549)
T 2z81_A 158 LSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236 (549)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEE
T ss_pred CcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccc
Confidence 9999888888999999999999999886 677776666889999999999998742 2 23345778888999988887
Q ss_pred cccChhhh---hcCCCCCEEEccCCcccccc------cccccCCccCceeeccCCcccccC-----CCcCCCCCCCcEEE
Q 001036 703 GEIPDHLA---MCCVNLEFLSLSNNSLKGHI------FSRIFSLRNLRWLLLEGNHFVGEI-----PQSLSKCSSLKGLY 768 (1180)
Q Consensus 703 ~~ip~~~~---~~~~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~ 768 (1180)
+..+..+. ..+++|+.+++++|.+.+.. ...+..+++|+.|++.++.+.... +..+...++|+.|+
T Consensus 237 ~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~ 316 (549)
T 2z81_A 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316 (549)
T ss_dssp HHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEE
T ss_pred hhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEE
Confidence 65554432 34567777777777765431 122334455555555555443210 00111223445555
Q ss_pred CcCCcCCCCCcccc-cCCCCCCeEEccCCcCCCCCCc---cccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcc
Q 001036 769 LNNNNLSGKIPRWL-GNLKGLQHIVMPKNHLEGPIPV---EFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNM 844 (1180)
Q Consensus 769 l~~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~ 844 (1180)
+++|.+. .+|.++ ..+++|++|++++|++++.+|. .+..+++ |+.|++++|.
T Consensus 317 l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~-----------------------L~~L~Ls~N~ 372 (549)
T 2z81_A 317 VENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS-----------------------LQTLVLSQNH 372 (549)
T ss_dssp EESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTT-----------------------CCEEECTTSC
T ss_pred eccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhcccc-----------------------CcEEEccCCc
Confidence 5555443 334333 2344444555544444443321 2334444 5555555555
Q ss_pred cccccC-cccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCC
Q 001036 845 LHGQLK-EGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIP 923 (1180)
Q Consensus 845 ~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 923 (1180)
+++..+ ...+..+++|++|++++|+++ .+|..++.+++|++|++++|++++ +|..+ .++|++||+++|++++.++
T Consensus 373 l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~~ 448 (549)
T 2z81_A 373 LRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFSL 448 (549)
T ss_dssp CCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCCC
T ss_pred ccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhcc
Confidence 443211 125788999999999999999 678889999999999999999984 44443 2689999999999987531
Q ss_pred CCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccc
Q 001036 924 SCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI 1003 (1180)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~ 1003 (1180)
. ++.|+.|||++|+|+ .+|. .
T Consensus 449 ----~-----------------------------------------------------l~~L~~L~Ls~N~l~-~ip~-~ 469 (549)
T 2z81_A 449 ----F-----------------------------------------------------LPRLQELYISRNKLK-TLPD-A 469 (549)
T ss_dssp ----C-----------------------------------------------------CTTCCEEECCSSCCS-SCCC-G
T ss_pred ----c-----------------------------------------------------CChhcEEECCCCccC-cCCC-c
Confidence 1 337999999999999 6776 5
Q ss_pred cCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCC
Q 001036 1004 GNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIP 1048 (1180)
Q Consensus 1004 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip 1048 (1180)
+.+++|++|||++|++++.+|..|+.+++|+.|++++|+++|..|
T Consensus 470 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 789999999999999999999999999999999999999999887
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.6e-43 Score=439.85 Aligned_cols=393 Identities=17% Similarity=0.227 Sum_probs=309.8
Q ss_pred CcccccCChhhhhcCCcccEEEccCCcccCC-CCCCCCCCCCccEEEccCCcccccCChhhh-hcCCCCcEEEccCCcCC
Q 001036 601 IKMIGEFPNWLLENNTKLEFLYLVNDSLAGP-FRLPIHSHKRLRFLDVSNNNFQGHIPVEIG-DILPSLVYFNISMNALD 678 (1180)
Q Consensus 601 ~~~~~~~p~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~-~~l~~L~~L~ls~n~l~ 678 (1180)
|.+.+ +|.. +.++++|+.|++++|.+++. ++..+. ..+.|.+.|.+|..++ ..+++|++|++++|.+.
T Consensus 435 N~L~~-IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~--------~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~ 504 (876)
T 4ecn_A 435 NRITF-ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWE--------DANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504 (876)
T ss_dssp CEEEE-ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCS--------CTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC
T ss_pred Ccccc-hhHH-HhcCCCCCEEECcCCcCCCCccccccc--------ccccccccccCChhhhhccCCCCCEEECcCCCCC
Confidence 45555 5654 44566666666666666551 111110 0111333345887764 23788888888888888
Q ss_pred ccCCccccCcccCcEEEccCcc-ccc-ccChhhh------hcCCCCCEEEccCCcccccccc--cccCCccCceeeccCC
Q 001036 679 GSIPSSFGNVIFLQFLDLSNNK-LTG-EIPDHLA------MCCVNLEFLSLSNNSLKGHIFS--RIFSLRNLRWLLLEGN 748 (1180)
Q Consensus 679 ~~~p~~~~~l~~L~~L~l~~n~-l~~-~ip~~~~------~~~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n 748 (1180)
+.+|..|+++++|+.|++++|+ ++| .+|..+. ..+++|++|++++|.++ .+|. .+.++++|++|++++|
T Consensus 505 ~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N 583 (876)
T 4ecn_A 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHN 583 (876)
T ss_dssp CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTS
T ss_pred ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCC
Confidence 8888888888888888888887 887 7777653 13358899999999888 7777 8888899999999999
Q ss_pred cccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCC-CCeEEccCCcCCCCCCccccCCCC--CCEEEccCCccccc
Q 001036 749 HFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKG-LQHIVMPKNHLEGPIPVEFCRLDS--LQILDISDNNISGS 825 (1180)
Q Consensus 749 ~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~ 825 (1180)
.++ .+| .++.+++|+.|++++|+++ .+|.++..+++ |+.|++++|.++ .+|..+..++. |+.|++++|++++.
T Consensus 584 ~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 584 KVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp CCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred Ccc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCc
Confidence 888 777 8888889999999999988 78888888888 999999999888 67877776654 89999999999887
Q ss_pred CCCCc------CCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhc--------CCCCCEEecCC
Q 001036 826 LPSCF------YPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG--------LSQLSHLNLAH 891 (1180)
Q Consensus 826 ~p~~~------~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~--------l~~L~~L~L~~ 891 (1180)
+|... ...+|+.|++++|.+. .+|...+..+++|+.|+|++|+++ .+|..+.. +++|+.|+|++
T Consensus 660 ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 660 GRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp SSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred cccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCC
Confidence 76433 3357899999999988 677756678999999999999999 55554432 23899999999
Q ss_pred CccccCCCcccc--CCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhc
Q 001036 892 NNLEGEVPIQLC--RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFT 969 (1180)
Q Consensus 892 N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 969 (1180)
|+++ .+|..+. .+++|+.|+|++|++++ +|..+.+++
T Consensus 738 N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~--------------------------------------- 776 (876)
T 4ecn_A 738 NKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSS--------------------------------------- 776 (876)
T ss_dssp SCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCT---------------------------------------
T ss_pred CCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCC---------------------------------------
Confidence 9999 7888887 99999999999999998 676665533
Q ss_pred cccchhcccchhccccceEEccC------CcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcC
Q 001036 970 TKNIAYAYQGRVLSLLAGLDLSC------NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 1043 (1180)
Q Consensus 970 ~~~~~~~~~~~~l~~L~~LdLs~------N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 1043 (1180)
.|+.|+|++ |++.+.+|..|+++++|+.|+|++|++ +.+|..+. ++|+.|||++|++
T Consensus 777 --------------~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 777 --------------QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp --------------TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred --------------CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence 788898876 889999999999999999999999999 79999877 6999999999999
Q ss_pred cccCCccccCCCCCCEEEcCCCcCc
Q 001036 1044 SGKIPRQLVDLNTLAIFIVAYNNLS 1068 (1180)
Q Consensus 1044 ~g~ip~~l~~l~~L~~l~ls~N~l~ 1068 (1180)
....+..+.....+..+.+++|++.
T Consensus 840 ~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 840 ISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp CEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CccChHHccccccchheeecCCCcc
Confidence 9888788877777777888888765
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.6e-43 Score=425.04 Aligned_cols=161 Identities=25% Similarity=0.324 Sum_probs=126.0
Q ss_pred cCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCcccc--CCCccccCCCCCCEEECcCCcCcccCCC-CccCccc
Q 001036 855 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG--EVPIQLCRLNQLQLLDLSDNNLHGLIPS-CFDNTTL 931 (1180)
Q Consensus 855 ~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~ 931 (1180)
..+++|++|++++|++++.+|.+++.+++|++|++++|++++ .+|..+..+++|++||+++|++++.+|. .+..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~--- 397 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW--- 397 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC---
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc---
Confidence 466778888888888887777778888888888888888876 4566778888888888888888774443 2333
Q ss_pred ccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCE
Q 001036 932 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQT 1011 (1180)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~ 1011 (1180)
++.|+.|++++|++++.+|..+. ++|++
T Consensus 398 --------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~ 425 (520)
T 2z7x_B 398 --------------------------------------------------TKSLLSLNMSSNILTDTIFRCLP--PRIKV 425 (520)
T ss_dssp --------------------------------------------------CTTCCEEECCSSCCCGGGGGSCC--TTCCE
T ss_pred --------------------------------------------------CccCCEEECcCCCCCcchhhhhc--ccCCE
Confidence 23678888888888877777665 68888
Q ss_pred EeCccccccccccccccCCCCCCEEECcCCcCcccCCcc-ccCCCCCCEEEcCCCcCcccCC
Q 001036 1012 LNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ-LVDLNTLAIFIVAYNNLSGKIP 1072 (1180)
Q Consensus 1012 L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~l~ls~N~l~g~ip 1072 (1180)
|+|++|+++ .+|..+..+++|+.|||++|+++ .+|.. +..+++|+.|++++|++++.++
T Consensus 426 L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 426 LDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp EECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 899999888 78887778889999999999988 46655 8888889999999998888766
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-42 Score=420.51 Aligned_cols=438 Identities=20% Similarity=0.208 Sum_probs=362.4
Q ss_pred CcccEEEcCCCcccccCChhhhhcCCcccEEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEE
Q 001036 591 HELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYF 670 (1180)
Q Consensus 591 ~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L 670 (1180)
+++++|++++|.+.+..|.. +.++++|++|++++|.+++..+..+..+++|++|++++|.++ .+|.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSD-ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHH-HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEE
T ss_pred ccccEEECCCCcccccChhh-ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEE
Confidence 57788888888877655444 678999999999999999888888999999999999999998 68776 48999999
Q ss_pred EccCCcCCc-cCCccccCcccCcEEEccCcccccccChhhhhcCCCC--CEEEccCCcc--cccccccccCCc-cCceee
Q 001036 671 NISMNALDG-SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNL--EFLSLSNNSL--KGHIFSRIFSLR-NLRWLL 744 (1180)
Q Consensus 671 ~ls~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L--~~L~L~~n~l--~~~~~~~~~~l~-~L~~L~ 744 (1180)
++++|.+++ .+|..|+++++|++|++++|++++ ..+..+++| ++|++++|.+ .+..|..+..+. ....++
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred eccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 999999987 478899999999999999999874 223467788 9999999999 778888877765 345678
Q ss_pred ccCCcccccCCC-cCCCCCCCcEEECcCCc-------CCCCCcccccCCCCCCeEEccCCcCCCCCCcccc---CCCCCC
Q 001036 745 LEGNHFVGEIPQ-SLSKCSSLKGLYLNNNN-------LSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFC---RLDSLQ 813 (1180)
Q Consensus 745 L~~n~l~~~~p~-~~~~l~~L~~L~l~~n~-------l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~ 813 (1180)
+++|.+.+.++. .+.++++|+.|++++|. +.+.+| .++.+++|+.|++++|.+++..+..+. ..++|+
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 888888876654 67789999999999987 666555 788899999999999887754332221 246899
Q ss_pred EEEccCCcccccCCCCc------CCCcccEEEcCCcccccccCcccccCC---CCCcEEECcCccCccccchhhhcCCCC
Q 001036 814 ILDISDNNISGSLPSCF------YPLSIKQVHLSKNMLHGQLKEGTFFNC---SSLVTLDLSYNYLNGSIPDWIDGLSQL 884 (1180)
Q Consensus 814 ~L~l~~n~l~~~~p~~~------~~~~L~~L~l~~n~~~~~~~~~~~~~~---~~L~~L~L~~n~l~~~~p~~~~~l~~L 884 (1180)
+|++++|+++|.+|..+ ....|+.+++++|.+ .+|...+..+ .+|+.|++++|.+.+.. .+..+++|
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L 326 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPF 326 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCC
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcc
Confidence 99999999998888875 245788899999888 5664344444 67999999999987532 12688999
Q ss_pred CEEecCCCccccCCCccccCCCCCCEEECcCCcCcc--cCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhh
Q 001036 885 SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHG--LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKI 962 (1180)
Q Consensus 885 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 962 (1180)
++|++++|++++.+|..++.+++|++|++++|++++ .+|..+++
T Consensus 327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~---------------------------------- 372 (520)
T 2z7x_B 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ---------------------------------- 372 (520)
T ss_dssp CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT----------------------------------
T ss_pred cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh----------------------------------
Confidence 999999999999999999999999999999999986 33444443
Q ss_pred hhhhhhccccchhcccchhccccceEEccCCcccCCCCcc-ccCCCCCCEEeCccccccccccccccCCCCCCEEECcCC
Q 001036 963 LEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ-IGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYN 1041 (1180)
Q Consensus 963 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~-~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N 1041 (1180)
++.|+.||+++|++++.+|.. +..+++|++|++++|++++.+|..+. ++|+.|||++|
T Consensus 373 -------------------l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N 431 (520)
T 2z7x_B 373 -------------------MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN 431 (520)
T ss_dssp -------------------CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS
T ss_pred -------------------CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC
Confidence 348999999999999867765 89999999999999999999998876 79999999999
Q ss_pred cCcccCCccccCCCCCCEEEcCCCcCcccCCCc-ccccccCCccccCCCCCCCCCCCCC
Q 001036 1042 KLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW-TAQFATFNKSSYDGNPFLCGLPLPI 1099 (1180)
Q Consensus 1042 ~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~-~~~~~~~~~~~~~~N~~lc~~~l~~ 1099 (1180)
+++ .+|..+..+++|++|++++|++++ +|.. +..+..+...++.+||+.|.|++.|
T Consensus 432 ~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~ 488 (520)
T 2z7x_B 432 KIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRID 488 (520)
T ss_dssp CCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHHHH
T ss_pred ccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCchH
Confidence 999 899999999999999999999994 6653 6778888889999999999987544
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.4e-40 Score=414.52 Aligned_cols=516 Identities=21% Similarity=0.211 Sum_probs=355.1
Q ss_pred CCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcEE
Q 001036 466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF 545 (1180)
Q Consensus 466 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l 545 (1180)
+++++|+|++|.+++..+..|.++++|++|++++|+++ .+++..|.++++|++|+|++|+++ .++...|.++++|++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEE
Confidence 46888888888888777778888888888888888887 565777888888888888888876 4555667777777777
Q ss_pred ecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccC
Q 001036 546 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVN 625 (1180)
Q Consensus 546 ~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~ 625 (1180)
++++|.+..++. ..++++++|+.|++++
T Consensus 130 ~Ls~N~l~~l~~----------------------------------------------------~~~~~L~~L~~L~Ls~ 157 (635)
T 4g8a_A 130 VAVETNLASLEN----------------------------------------------------FPIGHLKTLKELNVAH 157 (635)
T ss_dssp ECTTSCCCCSTT----------------------------------------------------CCCTTCTTCCEEECCS
T ss_pred ECCCCcCCCCCh----------------------------------------------------hhhhcCcccCeecccc
Confidence 777776554321 1123444555555555
Q ss_pred CcccCC-CCCCCCCCCCccEEEccCCcccccCChhhhhcCC----CCcEEEccCCcCCccCCccccCcccCcEEEccCcc
Q 001036 626 DSLAGP-FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILP----SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK 700 (1180)
Q Consensus 626 n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~----~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 700 (1180)
|.+++. .+..+..+++|++|++++|++++..|..+.. +. ....++++.|.++...+..+. ...++.+++.+|.
T Consensus 158 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~-L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~ 235 (635)
T 4g8a_A 158 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNF 235 (635)
T ss_dssp SCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH-HHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCC
T ss_pred CccccCCCchhhccchhhhhhcccCccccccccccccc-hhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhccc
Confidence 554432 2334445566666666666666444433321 22 234677777777755554443 3345667777776
Q ss_pred cccccChhhhhcCCCCCEEEccCCc------ccccccccccCCccCceeeccCCcccc---cCCCcCCCCCCCcEEECcC
Q 001036 701 LTGEIPDHLAMCCVNLEFLSLSNNS------LKGHIFSRIFSLRNLRWLLLEGNHFVG---EIPQSLSKCSSLKGLYLNN 771 (1180)
Q Consensus 701 l~~~ip~~~~~~~~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~p~~~~~l~~L~~L~l~~ 771 (1180)
....++...+..+..++...+..+. +.......+..+..+....+..+.... ..+..+..+.+++.+++.+
T Consensus 236 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 315 (635)
T 4g8a_A 236 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVS 315 (635)
T ss_dssp SSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEES
T ss_pred ccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccc
Confidence 6555555555666776666554332 222333444555555555555443221 2334455566777777777
Q ss_pred CcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCccccc--cc
Q 001036 772 NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG--QL 849 (1180)
Q Consensus 772 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~--~~ 849 (1180)
+.+... ..+....+|+.|++.+|.+.+..+. .+..|+.+++.+|..... +.....++++.+++++|.+.. ..
T Consensus 316 ~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~ 389 (635)
T 4g8a_A 316 VTIERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA-FSEVDLPSLEFLDLSRNGLSFKGCC 389 (635)
T ss_dssp CEEEEC--GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB-CCCCBCTTCCEEECCSSCCBEEEEC
T ss_pred cccccc--cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC-cccccccccccchhhcccccccccc
Confidence 776532 2345567778888888777654432 356677777777776533 333445677888888877643 23
Q ss_pred CcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCC-ccccCCCCCCEEECcCCcCcccCCCCccC
Q 001036 850 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDLSDNNLHGLIPSCFDN 928 (1180)
Q Consensus 850 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 928 (1180)
+. .+..+.+|+.++++.|.+.. .+..+..+++|+.+++++|+.....+ ..+..+++++.+++++|.+++..|..+..
T Consensus 390 ~~-~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~ 467 (635)
T 4g8a_A 390 SQ-SDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 467 (635)
T ss_dssp CH-HHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred cc-chhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccccccccc
Confidence 33 56677888888888888764 45567788888888888887765544 45778888888888888888877776654
Q ss_pred cccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcc-cCCCCccccCCC
Q 001036 929 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL-VGHIPPQIGNLT 1007 (1180)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l-~g~~p~~~~~l~ 1007 (1180)
++ .++.|+|++|++ .+.+|..|..++
T Consensus 468 ~~-----------------------------------------------------~L~~L~Ls~N~~~~~~~~~~~~~l~ 494 (635)
T 4g8a_A 468 LS-----------------------------------------------------SLEVLKMAGNSFQENFLPDIFTELR 494 (635)
T ss_dssp CT-----------------------------------------------------TCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ch-----------------------------------------------------hhhhhhhhhcccccccCchhhhhcc
Confidence 33 688889988874 445778888889
Q ss_pred CCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCccccc-ccCCcccc
Q 001036 1008 RIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQF-ATFNKSSY 1086 (1180)
Q Consensus 1008 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~-~~~~~~~~ 1086 (1180)
+|++|||++|+|++.+|..|+++++|+.|+|++|+|++..|..|..+++|++||+++|+|++.+|+.+..+ .++...++
T Consensus 495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence 99999999999998888889999999999999999988888888888999999999999998888766666 56777888
Q ss_pred CCCCCCCCCCCC
Q 001036 1087 DGNPFLCGLPLP 1098 (1180)
Q Consensus 1087 ~~N~~lc~~~l~ 1098 (1180)
.+|||.|+|.+.
T Consensus 575 ~~Np~~C~C~~~ 586 (635)
T 4g8a_A 575 TQNDFACTCEHQ 586 (635)
T ss_dssp TTCCBCCSGGGH
T ss_pred eCCCCcccCCcH
Confidence 899999988754
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.2e-38 Score=397.10 Aligned_cols=514 Identities=21% Similarity=0.198 Sum_probs=357.6
Q ss_pred cceeeeccCcccCCCCccccccccCCCCCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCC
Q 001036 439 SLKYLSLSGSTLGTNSSRILDQGLCPLAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIE 518 (1180)
Q Consensus 439 ~L~~L~L~~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~ 518 (1180)
.++.|+++++.+. .+.+..|..+++|++|+|++|.+++..|.+|.++++|++|++++|+++ .+++..|.++++|+
T Consensus 53 ~~~~LdLs~N~i~----~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 53 STKNLDLSFNPLR----HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQ 127 (635)
T ss_dssp TCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCC
T ss_pred CCCEEEeeCCCCC----CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCC
Confidence 4666666666553 233457888999999999999999888889999999999999999997 56677899999999
Q ss_pred EEEccCCccccccCcccccCCCCCcEEecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEc
Q 001036 519 ELRLSNNHFRIPVSLEPLFNHSKLKIFDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAEL 598 (1180)
Q Consensus 519 ~L~L~~n~l~~~~~~~~l~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l 598 (1180)
+|++++|+++ .++...|.++++|++|++++|.+... ..|.++..++.|+.|++
T Consensus 128 ~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~--------------------------~~~~~~~~l~~L~~L~L 180 (635)
T 4g8a_A 128 KLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSF--------------------------KLPEYFSNLTNLEHLDL 180 (635)
T ss_dssp EEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCC--------------------------CCCGGGGGCTTCCEEEC
T ss_pred EEECCCCcCC-CCChhhhhcCcccCeeccccCccccC--------------------------CCchhhccchhhhhhcc
Confidence 9999999998 45556788999999999888876532 34566777888889999
Q ss_pred CCCcccccCChhhhhcCCc----ccEEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccC
Q 001036 599 SHIKMIGEFPNWLLENNTK----LEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISM 674 (1180)
Q Consensus 599 ~~~~~~~~~p~~~~~~~~~----L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~ 674 (1180)
++|++.+..|..+ ..+++ ...++++.|.+....+..+ ....++.+++.+|.....++...+..++.++...+..
T Consensus 181 ~~N~l~~~~~~~l-~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~ 258 (635)
T 4g8a_A 181 SSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 258 (635)
T ss_dssp CSSCCCEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEE
T ss_pred cCccccccccccc-cchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccc
Confidence 9888887666542 33332 3467788888776554443 3445677888888766555555555577777666543
Q ss_pred Cc------CCccCCccccCcccCcEEEccCccccc---ccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeec
Q 001036 675 NA------LDGSIPSSFGNVIFLQFLDLSNNKLTG---EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLL 745 (1180)
Q Consensus 675 n~------l~~~~p~~~~~l~~L~~L~l~~n~l~~---~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 745 (1180)
+. +....+..+..+..+...++..+.... .++. .+....+++.+++.++.+.... .+.....|+.|++
T Consensus 259 ~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l 335 (635)
T 4g8a_A 259 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIID-LFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLEL 335 (635)
T ss_dssp ECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTT-TTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEE
T ss_pred cccccccccccccccccccccchhhhhhhhhhhcccccchhh-hhhhhccccccccccccccccc--ccccchhhhhhhc
Confidence 32 223334455555666666555443321 1111 1234556666666666654332 2344455666666
Q ss_pred cCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCC--CCCCccccCCCCCCEEEccCCccc
Q 001036 746 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE--GPIPVEFCRLDSLQILDISDNNIS 823 (1180)
Q Consensus 746 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~ 823 (1180)
.+|.+.+..+. .++.|+.+++.+|..... .....+++|+.++++.|.+. +..+..+..+.+|+.++++.|...
T Consensus 336 ~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~ 410 (635)
T 4g8a_A 336 VNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI 410 (635)
T ss_dssp ESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE
T ss_pred ccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc
Confidence 66665543332 244555666666555422 22334555566666555543 223334444555555555555443
Q ss_pred ccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccc-hhhhcCCCCCEEecCCCccccCCCccc
Q 001036 824 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEGEVPIQL 902 (1180)
Q Consensus 824 ~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~ 902 (1180)
+ ++. .+..+++|+.++++.|......+ ..|..+++++.++++.|.+.+..|..+
T Consensus 411 -----------------------~-~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~ 465 (635)
T 4g8a_A 411 -----------------------T-MSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 465 (635)
T ss_dssp -----------------------E-ECS-CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred -----------------------c-ccc-cccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence 2 222 56677788888888777655443 457778888888888888888888888
Q ss_pred cCCCCCCEEECcCCcCc-ccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchh
Q 001036 903 CRLNQLQLLDLSDNNLH-GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRV 981 (1180)
Q Consensus 903 ~~l~~L~~L~Ls~N~l~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 981 (1180)
..+++|++|+|++|++. +.+|..|..++
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~--------------------------------------------------- 494 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELR--------------------------------------------------- 494 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCT---------------------------------------------------
T ss_pred ccchhhhhhhhhhcccccccCchhhhhcc---------------------------------------------------
Confidence 88888888888888744 44566665433
Q ss_pred ccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCC-CCCCEE
Q 001036 982 LSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL-NTLAIF 1060 (1180)
Q Consensus 982 l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l-~~L~~l 1060 (1180)
+|+.|||++|+|++.+|..|+++++|++|+|++|+|++..|..|+++++|++|||++|+|++.+|..+..+ ++|++|
T Consensus 495 --~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L 572 (635)
T 4g8a_A 495 --NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 572 (635)
T ss_dssp --TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE
T ss_pred --ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE
Confidence 78889999999998888999999999999999999999999999999999999999999999999999888 689999
Q ss_pred EcCCCcCcccCC
Q 001036 1061 IVAYNNLSGKIP 1072 (1180)
Q Consensus 1061 ~ls~N~l~g~ip 1072 (1180)
++++|++++...
T Consensus 573 ~L~~Np~~C~C~ 584 (635)
T 4g8a_A 573 NLTQNDFACTCE 584 (635)
T ss_dssp ECTTCCBCCSGG
T ss_pred EeeCCCCcccCC
Confidence 999999988664
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.6e-39 Score=386.28 Aligned_cols=372 Identities=21% Similarity=0.240 Sum_probs=306.5
Q ss_pred cEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEcc
Q 001036 643 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS 722 (1180)
Q Consensus 643 ~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~ 722 (1180)
+.++.+++.++ .+|. + .++|++|++++|.+++..|..|+++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 35667777776 6776 2 47899999999999988888999999999999999988878877777788999999999
Q ss_pred CCcccccccccccCCccCceeeccCCcccccCCCc--CCCCCCCcEEECcCCcCCCCCccc-ccCCCCCCeEEccCCcCC
Q 001036 723 NNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQS--LSKCSSLKGLYLNNNNLSGKIPRW-LGNLKGLQHIVMPKNHLE 799 (1180)
Q Consensus 723 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~ 799 (1180)
+|.+++..|..|.++++|++|++++|.+++..|.. +..+++|++|++++|++++..|.. +.++++|++|++++|+++
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 99999888889999999999999999998755544 888999999999999998877776 788999999999999999
Q ss_pred CCCCccccCC--CCCCEEEccCCcccccCCCCc---------CCCcccEEEcCCcccccccCcccccC---CCCCcEEEC
Q 001036 800 GPIPVEFCRL--DSLQILDISDNNISGSLPSCF---------YPLSIKQVHLSKNMLHGQLKEGTFFN---CSSLVTLDL 865 (1180)
Q Consensus 800 ~~~~~~~~~l--~~L~~L~l~~n~l~~~~p~~~---------~~~~L~~L~l~~n~~~~~~~~~~~~~---~~~L~~L~L 865 (1180)
+..|..+..+ .+|+.|++++|.+.+..+..+ ...+|+.|++++|.+.+.+|. .+.. .++|+.|++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK-RFFDAIAGTKIQSLIL 246 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH-HHHHHTTTCCEEEEEC
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchh-hhhccccccceeeEee
Confidence 8888888766 688999999999886544432 235788888888888877766 4433 378888888
Q ss_pred cCccCccc----------cchhhhcC--CCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCccccc
Q 001036 866 SYNYLNGS----------IPDWIDGL--SQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE 933 (1180)
Q Consensus 866 ~~n~l~~~----------~p~~~~~l--~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 933 (1180)
++|.+.+. .+..+.++ ++|++|++++|.+.+.+|..+..+++|++|+|++|++++..|..|++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--- 323 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT--- 323 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT---
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc---
Confidence 88755432 22333333 6799999999999988888899999999999999999888887776543
Q ss_pred ccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEe
Q 001036 934 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLN 1013 (1180)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ 1013 (1180)
.|+.|+|++|++++..|..|+++++|++|+
T Consensus 324 --------------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 324 --------------------------------------------------HLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp --------------------------------------------------TCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred --------------------------------------------------cCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 788899999999888888889999999999
Q ss_pred CccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCC
Q 001036 1014 LSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus 1014 Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
|++|++++..|..|+++++|+.|+|++|++++..+..+..+++|++|++++|+++|.+|.
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999988888999999999999999999977777788899999999999999998885
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.9e-40 Score=400.66 Aligned_cols=458 Identities=20% Similarity=0.199 Sum_probs=265.4
Q ss_pred CCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcEE
Q 001036 466 AHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKIF 545 (1180)
Q Consensus 466 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~l 545 (1180)
...+++++++|.+++ +|..+. ++|++|++++|.++ .+++..+.++++|++|++++|.+++ ++...|.++++|++|
T Consensus 31 ~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 31 ELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYL 105 (562)
T ss_dssp --CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCc-CCHHHhCCCCCCCEE
Confidence 344677777777764 554433 67777777777776 3445667777777777777777763 333446666666666
Q ss_pred ecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccc-cCChhhhhcCCcccEEEcc
Q 001036 546 DAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIG-EFPNWLLENNTKLEFLYLV 624 (1180)
Q Consensus 546 ~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~-~~p~~~~~~~~~L~~L~l~ 624 (1180)
++++|.+..++. . .+++|++|++++|.+.+ .+|.. +.++++|+.|+++
T Consensus 106 ~Ls~N~l~~lp~----------------------------~--~l~~L~~L~Ls~N~l~~l~~p~~-~~~l~~L~~L~L~ 154 (562)
T 3a79_B 106 DVSHNRLQNISC----------------------------C--PMASLRHLDLSFNDFDVLPVCKE-FGNLTKLTFLGLS 154 (562)
T ss_dssp ECTTSCCCEECS----------------------------C--CCTTCSEEECCSSCCSBCCCCGG-GGGCTTCCEEEEE
T ss_pred ECCCCcCCccCc----------------------------c--ccccCCEEECCCCCccccCchHh-hcccCcccEEecC
Confidence 666666543211 1 22344444444444443 22222 3455555555555
Q ss_pred CCcccCCCCCCCCCCCCc--cEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcc--cCcEEEccCcc
Q 001036 625 NDSLAGPFRLPIHSHKRL--RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVI--FLQFLDLSNNK 700 (1180)
Q Consensus 625 ~n~~~~~~~~~~~~~~~L--~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~--~L~~L~l~~n~ 700 (1180)
+|.+++. .+..+++| +.|++++|.+.. ++..|..+..+. .+ .+++++|.
T Consensus 155 ~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~-----------------------~~~~~~~l~~l~~~~l-~l~l~~n~ 207 (562)
T 3a79_B 155 AAKFRQL---DLLPVAHLHLSCILLDLVSYHI-----------------------KGGETESLQIPNTTVL-HLVFHPNS 207 (562)
T ss_dssp CSBCCTT---TTGGGTTSCEEEEEEEESSCCC-----------------------CSSSCCEEEECCEEEE-EEEECSSS
T ss_pred CCccccC---chhhhhhceeeEEEeecccccc-----------------------cccCcccccccCcceE-EEEecCcc
Confidence 5555432 12222222 444444444400 333444433322 11 23444444
Q ss_pred cccccChhhhhcCCCCCEEEccCCc-----ccccccccccCCccCceeeccCCcccccC----CCcCCCCCCCcEEECcC
Q 001036 701 LTGEIPDHLAMCCVNLEFLSLSNNS-----LKGHIFSRIFSLRNLRWLLLEGNHFVGEI----PQSLSKCSSLKGLYLNN 771 (1180)
Q Consensus 701 l~~~ip~~~~~~~~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~l~~ 771 (1180)
+.+.+++..+..+++|+.+++++|+ +.+ ....+..+++|+.|++.++.+.+.. +..+ ..++|++|++++
T Consensus 208 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~ 285 (562)
T 3a79_B 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYN 285 (562)
T ss_dssp CCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEE
T ss_pred chhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEec
Confidence 4433433333334444444444442 111 1122334444444444444333210 0011 122455555555
Q ss_pred CcCCCCCcccc-----cCCCCCCeEEccCCcCCCCCC-ccccC---CCCCCEEEccCCcccccCCCCcCCCcccEEEcCC
Q 001036 772 NNLSGKIPRWL-----GNLKGLQHIVMPKNHLEGPIP-VEFCR---LDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 842 (1180)
Q Consensus 772 n~l~~~~p~~~-----~~l~~L~~L~l~~n~l~~~~~-~~~~~---l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~ 842 (1180)
|.++|.+|..+ .+++.|+.+++..|.+ .+| ..+.. ..+|+.|++++|.+..
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~------------------ 345 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIH------------------ 345 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCC------------------
T ss_pred cEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccc------------------
Confidence 55554455444 3344444444444443 222 11111 1345555555555431
Q ss_pred cccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccC--CCccccCCCCCCEEECcCCcCcc
Q 001036 843 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGE--VPIQLCRLNQLQLLDLSDNNLHG 920 (1180)
Q Consensus 843 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~ 920 (1180)
++ ....+++|+.|++++|.+++.+|..++++++|++|++++|++++. +|..+..+++|++|++++|++++
T Consensus 346 ------~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 346 ------MV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp ------CC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred ------cc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence 10 125677888888888888888888888888888888888888863 35668888888888888888887
Q ss_pred cCCC-CccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCC
Q 001036 921 LIPS-CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHI 999 (1180)
Q Consensus 921 ~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~ 999 (1180)
.+|. .+.. ++.|+.|++++|++++.+
T Consensus 418 ~~~~~~~~~-----------------------------------------------------l~~L~~L~l~~n~l~~~~ 444 (562)
T 3a79_B 418 HAYDRTCAW-----------------------------------------------------AESILVLNLSSNMLTGSV 444 (562)
T ss_dssp CCSSCCCCC-----------------------------------------------------CTTCCEEECCSSCCCGGG
T ss_pred ccChhhhcC-----------------------------------------------------cccCCEEECCCCCCCcch
Confidence 5554 3433 236888899999988877
Q ss_pred CccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCcc-ccCCCCCCEEEcCCCcCcccCCC
Q 001036 1000 PPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQ-LVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus 1000 p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
|..+. ++|++|+|++|+++ .+|..+.++++|+.|||++|+|+ .+|.. +..++.|+.|++++|+++|.+|.
T Consensus 445 ~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 445 FRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp GSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred hhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 77665 68999999999998 67777778999999999999999 56665 88899999999999999987763
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6e-39 Score=391.04 Aligned_cols=434 Identities=23% Similarity=0.255 Sum_probs=273.9
Q ss_pred ccEEEcCCCcccccCChhhhhcCCcccEEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEc
Q 001036 593 LKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNI 672 (1180)
Q Consensus 593 L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~l 672 (1180)
.+.++++++++.+ +|..+ .++++.|++++|.+++..+..+..+++|++|++++|.+++..|..+. .+++|++|++
T Consensus 33 ~~~l~ls~~~L~~-ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L 107 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFL-FNQDLEYLDV 107 (562)
T ss_dssp CCEEECTTSCCCS-CCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTT-TCTTCCEEEC
T ss_pred CcEEEcCCCCCcc-CCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhC-CCCCCCEEEC
Confidence 3566666666554 55542 25666666666666665555666666666666666666643343333 3566666666
Q ss_pred cCCcCCccCCccccCcccCcEEEccCccccc-ccChhhhhcCCCCCEEEccCCcccccccccccCCccC--ceeeccCCc
Q 001036 673 SMNALDGSIPSSFGNVIFLQFLDLSNNKLTG-EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNL--RWLLLEGNH 749 (1180)
Q Consensus 673 s~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~ 749 (1180)
++|.++. +|.. .+++|++|++++|++++ .+|..+ .++++|++|++++|++++. .+..+++| ++|++++|.
T Consensus 108 s~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~-~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 108 SHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEF-GNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp TTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGG-GGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred CCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhh-cccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence 6666663 3433 56666666666666652 122333 4566666666666666542 23333344 666666666
Q ss_pred c--cccCCCcCCCCC-CCcEEECcCCcCCCCCcc-cccCCCCCCeEEccCCcC-----CCCCCccccCCCCCCEEEccCC
Q 001036 750 F--VGEIPQSLSKCS-SLKGLYLNNNNLSGKIPR-WLGNLKGLQHIVMPKNHL-----EGPIPVEFCRLDSLQILDISDN 820 (1180)
Q Consensus 750 l--~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l-----~~~~~~~~~~l~~L~~L~l~~n 820 (1180)
+ ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|+. .+ ....+..+++|+.++++++
T Consensus 181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEE
T ss_pred ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCC
Confidence 6 555555555443 111345566665554443 334566666777766631 11 1122344445555544444
Q ss_pred ccccc----CCCCcCCCcccEEEcCCcccccccCcccc----cCCC--------------------------CCcEEECc
Q 001036 821 NISGS----LPSCFYPLSIKQVHLSKNMLHGQLKEGTF----FNCS--------------------------SLVTLDLS 866 (1180)
Q Consensus 821 ~l~~~----~p~~~~~~~L~~L~l~~n~~~~~~~~~~~----~~~~--------------------------~L~~L~L~ 866 (1180)
.+.+. ++......++++|++++|.+.|.+|...| .+++ +|+.|+++
T Consensus 260 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp EECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEE
T ss_pred cCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEcc
Confidence 44321 11122233666777777777666666322 3333 35555555
Q ss_pred CccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccC--CCCccCcccccccCCCCCCCCC
Q 001036 867 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI--PSCFDNTTLHESYNNNSSPDKP 944 (1180)
Q Consensus 867 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~~~~~~~~~~~~~~~~~ 944 (1180)
+|.+.... ..+.+++|++|++++|++++.+|..+..+++|++|++++|++++.. |..|++
T Consensus 340 ~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~---------------- 401 (562)
T 3a79_B 340 DTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN---------------- 401 (562)
T ss_dssp SSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT----------------
T ss_pred CCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC----------------
Confidence 55543221 1145666777777777777666777777777777777777766532 233332
Q ss_pred CccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCc-cccCCCCCCEEeCccccccccc
Q 001036 945 FKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP-QIGNLTRIQTLNLSHNNLTGTI 1023 (1180)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~-~~~~l~~L~~L~Ls~N~l~g~~ 1023 (1180)
++.|+.||+++|++++.+|. .+..+++|++|+|++|++++.+
T Consensus 402 -------------------------------------l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 444 (562)
T 3a79_B 402 -------------------------------------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444 (562)
T ss_dssp -------------------------------------CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG
T ss_pred -------------------------------------CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch
Confidence 44899999999999986665 4899999999999999999999
Q ss_pred cccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCc-ccccccCCccccCCCCCCCCCCCC
Q 001036 1024 PLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW-TAQFATFNKSSYDGNPFLCGLPLP 1098 (1180)
Q Consensus 1024 p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~-~~~~~~~~~~~~~~N~~lc~~~l~ 1098 (1180)
|..+. ++|+.|||++|+|+ .+|..+..++.|++|++++|++++ +|.. +..+..+...++.+||+.|+|+..
T Consensus 445 ~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 445 FRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp GSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred hhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 88776 79999999999999 789888899999999999999994 6654 677888888999999999998754
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.7e-38 Score=372.58 Aligned_cols=281 Identities=26% Similarity=0.343 Sum_probs=159.3
Q ss_pred CCCCcEEEccCCCcccccchhhcCCCCccEEEcccccCcCCCCCccccCCCCCCEEEccCCccccccCcccccCCCCCcE
Q 001036 465 LAHLQELYIDNNDLRGSLPWCLANTTSLRILDVSFNQLTGSISSSPLVHLTSIEELRLSNNHFRIPVSLEPLFNHSKLKI 544 (1180)
Q Consensus 465 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 544 (1180)
.++|++|++++|.+ +.+|..++++++|++|++++|.+.|.+ |..++.+++|+.+++.+|.. .+++.
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~l~l~~c~~------------~~l~~ 75 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNA-PPGNGEQREMAVSRLRDCLD------------RQAHE 75 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTS-CTTSCCCHHHHHHHHHHHHH------------HTCSE
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccC-Ccccccchhcchhhhhhhhc------------cCCCE
Confidence 46788888888888 788888888888888888888888777 56677777666665555431 23334
Q ss_pred EecCCcccccccccccCCCCcccceEEecccccCCCCCcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEcc
Q 001036 545 FDAKNNEINGEINESHSLTPKFQLKSLSLSSNYGDSVTFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLV 624 (1180)
Q Consensus 545 l~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~~~~~~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~ 624 (1180)
+++++|.+. + +|. ..++|+.|+++
T Consensus 76 L~l~~~~l~---------------------------------------------------~-lp~----~~~~L~~L~l~ 99 (454)
T 1jl5_A 76 LELNNLGLS---------------------------------------------------S-LPE----LPPHLESLVAS 99 (454)
T ss_dssp EECTTSCCS---------------------------------------------------C-CCS----CCTTCSEEECC
T ss_pred EEecCCccc---------------------------------------------------c-CCC----CcCCCCEEEcc
Confidence 444433322 2 222 12456666666
Q ss_pred CCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccc
Q 001036 625 NDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGE 704 (1180)
Q Consensus 625 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 704 (1180)
+|.+++ +|. .+++|++|++++|.++ .+|.. .++|++|++++|.+++ +| .|+++++|++|++++|+++ .
T Consensus 100 ~n~l~~-lp~---~~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~ 167 (454)
T 1jl5_A 100 CNSLTE-LPE---LPQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-K 167 (454)
T ss_dssp SSCCSS-CCC---CCTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-C
T ss_pred CCcCCc-ccc---ccCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-c
Confidence 666665 232 2367778888888777 34421 2578888888888876 56 5788888888888888877 4
Q ss_pred cChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccC
Q 001036 705 IPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGN 784 (1180)
Q Consensus 705 ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 784 (1180)
+|.. ..+|++|++++|++++ +| .++++++|++|++++|.+++ +|.. .++|++|++++|.+. .+|. ++.
T Consensus 168 lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~ 235 (454)
T 1jl5_A 168 LPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQN 235 (454)
T ss_dssp CCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTT
T ss_pred cCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCC
Confidence 6643 3477777777777776 34 46777777777777777765 3332 246777777777776 5553 666
Q ss_pred CCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccc
Q 001036 785 LKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLH 846 (1180)
Q Consensus 785 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~ 846 (1180)
+++|++|++++|++++ +|.. .++|+.|++++|++++ +|.. +.+++.|++++|.++
T Consensus 236 l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~--~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 236 LPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL--PQSLTFLDVSENIFS 290 (454)
T ss_dssp CTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCS
T ss_pred CCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc--cCcCCEEECcCCccC
Confidence 7777777777777664 3322 3566666666666654 3331 134444444444443
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1e-37 Score=370.69 Aligned_cols=373 Identities=23% Similarity=0.270 Sum_probs=324.0
Q ss_pred CcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccc-cccccCCccCceeec
Q 001036 667 LVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI-FSRIFSLRNLRWLLL 745 (1180)
Q Consensus 667 L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L 745 (1180)
-+.++.+++.++ .+|. + .++|++|++++|.+++..|..+ ..+++|++|++++|.+.+.+ +..|.++++|++|++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSF-SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTT-SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHh-ccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 346778888887 4555 3 3789999999999985545554 68999999999999998555 677999999999999
Q ss_pred cCCcccccCCCcCCCCCCCcEEECcCCcCCCCCccc--ccCCCCCCeEEccCCcCCCCCCcc-ccCCCCCCEEEccCCcc
Q 001036 746 EGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRW--LGNLKGLQHIVMPKNHLEGPIPVE-FCRLDSLQILDISDNNI 822 (1180)
Q Consensus 746 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~--~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l 822 (1180)
++|.+++..|..|+++++|++|++++|++++.+|.. ++.+++|++|++++|++++..|.. +.++++|++|++++|++
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 999999999999999999999999999999866665 899999999999999999888876 88999999999999999
Q ss_pred cccCCCCcCC---CcccEEEcCCcccccccCc-------ccccCCCCCcEEECcCccCccccchhhhcC---CCCCEEec
Q 001036 823 SGSLPSCFYP---LSIKQVHLSKNMLHGQLKE-------GTFFNCSSLVTLDLSYNYLNGSIPDWIDGL---SQLSHLNL 889 (1180)
Q Consensus 823 ~~~~p~~~~~---~~L~~L~l~~n~~~~~~~~-------~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l---~~L~~L~L 889 (1180)
.+..|..+.. ..++.+++++|.+.+..+. ..+..+++|+.|++++|++++..|..+... ++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 9888877643 6899999999998753332 023466899999999999999999988765 89999999
Q ss_pred CCCccccCC----------CccccC--CCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCc
Q 001036 890 AHNNLEGEV----------PIQLCR--LNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGS 957 (1180)
Q Consensus 890 ~~N~l~~~~----------p~~~~~--l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1180)
++|.+.+.. +..+.. .++|++|++++|++++.+|..|++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~--------------------------- 299 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT--------------------------- 299 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCT---------------------------
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCC---------------------------
Confidence 999665432 222222 36899999999999999988887644
Q ss_pred hhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEE
Q 001036 958 VEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 1037 (1180)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ 1037 (1180)
.|+.|+|++|++++..|..|+++++|++|+|++|++++..|..|+++++|+.||
T Consensus 300 --------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 300 --------------------------DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp --------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred --------------------------CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 799999999999999999999999999999999999999999999999999999
Q ss_pred CcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccccccCCccccCCCCCCCCCCC
Q 001036 1038 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL 1097 (1180)
Q Consensus 1038 Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~l 1097 (1180)
|++|++++..|..+..+++|++|++++|++++..+..+..+..+...++.+||+.|.||.
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999999999999999999999999987776667888899999999999999983
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.4e-37 Score=362.77 Aligned_cols=378 Identities=26% Similarity=0.315 Sum_probs=170.3
Q ss_pred CcccEEEcCCCcccccCChhhhhcCCcccEEEccCCcccCCCCCCCCCCCCc-------------cEEEccCCcccccCC
Q 001036 591 HELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRL-------------RFLDVSNNNFQGHIP 657 (1180)
Q Consensus 591 ~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L-------------~~L~l~~n~l~~~ip 657 (1180)
+.|+++++++|.+ |.+|.. ++++++|+.|++++|.+.|..|..++.+++| ++|++++|.++ .+|
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCC
T ss_pred ccchhhhcccCch-hhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCC
Confidence 3444445555444 445544 2355555555555555555555555444443 55555555555 233
Q ss_pred hhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCC
Q 001036 658 VEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSL 737 (1180)
Q Consensus 658 ~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 737 (1180)
. ..++|++|++++|.+++ +|.. +++|++|++++|+++ .+|.. .++|++|++++|++++ +| .++++
T Consensus 88 ~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l 152 (454)
T 1jl5_A 88 E----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNS 152 (454)
T ss_dssp S----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred C----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCC
Confidence 3 13455555555555554 3332 245555555555555 23321 1455555555555554 33 35555
Q ss_pred ccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEc
Q 001036 738 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 817 (1180)
Q Consensus 738 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 817 (1180)
++|++|++++|++++ +|..+ ++|++|++++|++++ +| .++++++|++|++++|++++ +|.. .++|++|++
T Consensus 153 ~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l 222 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA 222 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred CCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence 555555555555553 33322 355555555555553 34 35555555555555555553 2221 135555555
Q ss_pred cCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccC
Q 001036 818 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGE 897 (1180)
Q Consensus 818 ~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 897 (1180)
++|++. .+|......+|++|++++|.+.+ +|. ..++|+.|++++|++++ +|.. .++|++|++++|++++.
T Consensus 223 ~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 223 GNNILE-ELPELQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL 292 (454)
T ss_dssp CSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE
T ss_pred cCCcCC-cccccCCCCCCCEEECCCCcCCc-ccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc
Confidence 555555 44433333455555555555543 332 12455555555555554 3332 24555555555555541
Q ss_pred CCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcc
Q 001036 898 VPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 977 (1180)
Q Consensus 898 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 977 (1180)
|.. .++|++|++++|++++.. ..
T Consensus 293 -~~~---~~~L~~L~l~~N~l~~i~-~~---------------------------------------------------- 315 (454)
T 1jl5_A 293 -SEL---PPNLYYLNASSNEIRSLC-DL---------------------------------------------------- 315 (454)
T ss_dssp -SCC---CTTCCEEECCSSCCSEEC-CC----------------------------------------------------
T ss_pred -cCc---CCcCCEEECcCCcCCccc-CC----------------------------------------------------
Confidence 110 145555555555555311 00
Q ss_pred cchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcc--cCCccccCC-
Q 001036 978 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG--KIPRQLVDL- 1054 (1180)
Q Consensus 978 ~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g--~ip~~l~~l- 1054 (1180)
.+.|+.|++++|++++ +|.. +++|++|++++|+++ .+|. .+++|+.||+++|++++ .+|.++.++
T Consensus 316 ----~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~ 383 (454)
T 1jl5_A 316 ----PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLR 383 (454)
T ss_dssp ----CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEE
T ss_pred ----cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhh
Confidence 1146666666666664 4543 356666666666666 3454 35666666666666666 566666655
Q ss_pred ------------CCCCEEEcCCCcCcc--cCCCcc
Q 001036 1055 ------------NTLAIFIVAYNNLSG--KIPEWT 1075 (1180)
Q Consensus 1055 ------------~~L~~l~ls~N~l~g--~ip~~~ 1075 (1180)
++|+.||+++|+++| .+|.+.
T Consensus 384 ~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl 418 (454)
T 1jl5_A 384 MNSHLAEVPELPQNLKQLHVETNPLREFPDIPESV 418 (454)
T ss_dssp CCC--------------------------------
T ss_pred hcccccccccccCcCCEEECCCCcCCccccchhhH
Confidence 789999999999998 788643
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-35 Score=354.60 Aligned_cols=321 Identities=22% Similarity=0.225 Sum_probs=197.8
Q ss_pred cEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEcc
Q 001036 643 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS 722 (1180)
Q Consensus 643 ~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~ 722 (1180)
+.++.+++.++ .+|..+ .++++.|++++|.+++..|..|.++++|++|++++|.+++..|.. +.++++|++|+++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhh-hhCCccCCEEECC
Confidence 46777777777 677654 357888888888888777777888888888888888777433433 3467777777777
Q ss_pred CCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCC
Q 001036 723 NNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPI 802 (1180)
Q Consensus 723 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 802 (1180)
+|++++..+..|.++++|++|++++|.+.+..|..|.++++|+.|++++|.+.+..|..|..+++|++|++++|++++..
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 77777665566666777777777777776666666666777777777777666655666666666666666666666555
Q ss_pred CccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCC
Q 001036 803 PVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLS 882 (1180)
Q Consensus 803 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~ 882 (1180)
+..+..+++|+.|++++|.+.+. +...|..+++|+.|++++|.+.+.+|.......
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~------------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 224 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAI------------------------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEE------------------------CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC
T ss_pred hhHhcccCCCcEEeCCCCcCcEe------------------------ChhhcccCcccceeeCCCCccccccCcccccCc
Confidence 55566666666666666655422 112455566666666666665555555554445
Q ss_pred CCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhh
Q 001036 883 QLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKI 962 (1180)
Q Consensus 883 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 962 (1180)
+|+.|++++|++++..+..+..+++|++|+|++|++++..+..|.+++
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-------------------------------- 272 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL-------------------------------- 272 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT--------------------------------
T ss_pred cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc--------------------------------
Confidence 666666666666543334555556666666666555554444443322
Q ss_pred hhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCc
Q 001036 963 LEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK 1042 (1180)
Q Consensus 963 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~ 1042 (1180)
.|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|+
T Consensus 273 ---------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 273 ---------------------RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp ---------------------TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred ---------------------cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 45555555555555555555555555555555555554444445555555555555555
Q ss_pred Ccc
Q 001036 1043 LSG 1045 (1180)
Q Consensus 1043 l~g 1045 (1180)
+++
T Consensus 332 l~c 334 (477)
T 2id5_A 332 LAC 334 (477)
T ss_dssp EEC
T ss_pred ccC
Confidence 543
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.1e-35 Score=350.07 Aligned_cols=348 Identities=19% Similarity=0.175 Sum_probs=251.6
Q ss_pred cEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccC
Q 001036 668 VYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEG 747 (1180)
Q Consensus 668 ~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 747 (1180)
+.++.+++.++ .+|..+. +.++.|++++|+++ .++...+..+++|++|++++|.+++..|..|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 45555555555 3444332 35666666666665 33333334566666666666666655566666666666666666
Q ss_pred CcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCC
Q 001036 748 NHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLP 827 (1180)
Q Consensus 748 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 827 (1180)
|.+++..+..|.++++|++|++++|++.+..|..+..+++|++|++++|.+.+..+..|.++++|+.|++++|+++
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---- 165 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT---- 165 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS----
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc----
Confidence 6665544445556666666666666665555555566666666666666665555555555666666666655554
Q ss_pred CCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCC
Q 001036 828 SCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQ 907 (1180)
Q Consensus 828 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 907 (1180)
.++...|.++++|+.|++++|.+++..+..|..+++|+.|++++|++.+.+|.......+
T Consensus 166 --------------------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 166 --------------------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp --------------------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred --------------------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence 234336888999999999999999888889999999999999999988888888777789
Q ss_pred CCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccce
Q 001036 908 LQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAG 987 (1180)
Q Consensus 908 L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 987 (1180)
|+.|++++|++++..+..|.++ +.|+.
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l-----------------------------------------------------~~L~~ 252 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHL-----------------------------------------------------VYLRF 252 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTC-----------------------------------------------------TTCCE
T ss_pred ccEEECcCCcccccCHHHhcCc-----------------------------------------------------cccCe
Confidence 9999999999986544455443 37999
Q ss_pred EEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcC
Q 001036 988 LDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNL 1067 (1180)
Q Consensus 988 LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l 1067 (1180)
|||++|++++..+..|.++++|+.|+|++|++++..|..|.++++|+.|||++|+|++..+..|..+++|+.|++++|++
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 99999999988888899999999999999999999999999999999999999999988888889999999999999999
Q ss_pred cccCCCcccccccCCccccCCCCCCCCCCC
Q 001036 1068 SGKIPEWTAQFATFNKSSYDGNPFLCGLPL 1097 (1180)
Q Consensus 1068 ~g~ip~~~~~~~~~~~~~~~~N~~lc~~~l 1097 (1180)
.+..+. ...+.......+.++...|..|.
T Consensus 333 ~c~c~~-~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 333 ACDCRL-LWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp ECSGGG-HHHHTTTTSSCCTTCCCBEEESG
T ss_pred cCccch-HhHHhhhhccccCccCceeCCch
Confidence 887653 11222333456778888887764
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.7e-35 Score=342.88 Aligned_cols=356 Identities=18% Similarity=0.145 Sum_probs=260.2
Q ss_pred hhcCCcccEEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccC
Q 001036 612 LENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFL 691 (1180)
Q Consensus 612 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L 691 (1180)
+.++++|+.|++++|.+++. | .+..+++|++|++++|.+++ +| +. .+++|++|++++|.+++. | ++++++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~-~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LS-QNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CT-TCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred hhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cc-cCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 45677888888888888764 3 56777888888888888774 44 33 377888888888887764 3 7777888
Q ss_pred cEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcC
Q 001036 692 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNN 771 (1180)
Q Consensus 692 ~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~ 771 (1180)
++|++++|++++ +| +..+++|++|++++|++++. .++.+++|++|++++|...+.+ .+..+++|++|++++
T Consensus 109 ~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 109 TYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp CEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred CEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 888888888773 54 34677888888888887764 2667777888888887655554 366777788888888
Q ss_pred CcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCc
Q 001036 772 NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKE 851 (1180)
Q Consensus 772 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~ 851 (1180)
|++++ +| ++.+++|+.|++++|++++. .+..+++|++|++++|++++ +| ....++|+.|++++|.+++. |
T Consensus 180 n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~-~- 249 (457)
T 3bz5_A 180 NKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTEL-D- 249 (457)
T ss_dssp SCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSCC-C-
T ss_pred Cccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCCCc-C-
Confidence 87775 44 67777788888888877764 36677777888888777776 44 23345667777777766653 2
Q ss_pred ccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCccc
Q 001036 852 GTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 931 (1180)
Q Consensus 852 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 931 (1180)
+..+++|+.|+++.| +|+.|++++|++.+.+| ++.+++|+.|++++|++.|.+|.....++.
T Consensus 250 --~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~ 311 (457)
T 3bz5_A 250 --VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITE 311 (457)
T ss_dssp --CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSC
T ss_pred --HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceE
Confidence 234556666666554 46678888888887777 567899999999999988888754433321
Q ss_pred ccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCE
Q 001036 932 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQT 1011 (1180)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~ 1011 (1180)
+. ....+.|+.|++++|+|+|. | ++++++|+.
T Consensus 312 L~---------------------------------------------l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~ 343 (457)
T 3bz5_A 312 LD---------------------------------------------LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKS 343 (457)
T ss_dssp CC---------------------------------------------CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSE
T ss_pred ec---------------------------------------------hhhcccCCEEECCCCccccc-c--cccCCcCcE
Confidence 10 01134799999999999984 3 999999999
Q ss_pred EeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCc
Q 001036 1012 LNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 1074 (1180)
Q Consensus 1012 L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~ 1074 (1180)
|++++|+|+| ++.|+.|++++|+++|. ..+..|..+++++|+++|.||..
T Consensus 344 L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 344 LSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp EECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred EECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 9999999997 24677788999999987 34566888999999999999973
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5.2e-34 Score=338.54 Aligned_cols=345 Identities=25% Similarity=0.358 Sum_probs=211.5
Q ss_pred CCcccEEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEE
Q 001036 615 NTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFL 694 (1180)
Q Consensus 615 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 694 (1180)
+++++.|++.++.+.... .+..+++|++|++++|.+++ +|. +. .+++|++|++++|.+++..+ ++++++|++|
T Consensus 45 l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~-~~~-~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTD-ITP-LK-NLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCC-CGG-GT-TCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred hccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCC-chh-hh-ccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 345556666665554321 24445556666666665552 332 22 35566666666666654433 5556666666
Q ss_pred EccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcC
Q 001036 695 DLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL 774 (1180)
Q Consensus 695 ~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 774 (1180)
++++|.++ .++. +..+++|++|++++|.+++. ..+..+++|++|+++ |.+.+.. .+.++++|+.|++++|.+
T Consensus 118 ~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 118 TLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV 189 (466)
T ss_dssp ECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred ECCCCCCC-CChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcC
Confidence 66666555 3332 23555666666666655542 135555566666654 3333222 255555666666666655
Q ss_pred CCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccc
Q 001036 775 SGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTF 854 (1180)
Q Consensus 775 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~ 854 (1180)
.+. ..+..+++|++|++++|.+.+..| +..+++|+.|++++|++.+ ++ .+
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~------------------------~~--~l 239 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD------------------------IG--TL 239 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC------------------------CG--GG
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc------------------------ch--hh
Confidence 432 234555555566665555554433 4445555555555555542 11 46
Q ss_pred cCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccc
Q 001036 855 FNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHES 934 (1180)
Q Consensus 855 ~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~ 934 (1180)
..+++|+.|++++|.+++..| +..+++|++|++++|++++..+ +..+++|++|++++|++++..| ++.
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~------ 307 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN------ 307 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG------
T ss_pred hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC------
Confidence 667777888888887776554 7777778888888887775444 6777788888888887776443 222
Q ss_pred cCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeC
Q 001036 935 YNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNL 1014 (1180)
Q Consensus 935 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~L 1014 (1180)
++.|+.|+|++|++++..| ++.+++|+.|++
T Consensus 308 -----------------------------------------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 338 (466)
T 1o6v_A 308 -----------------------------------------------LKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338 (466)
T ss_dssp -----------------------------------------------CTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred -----------------------------------------------CCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence 3367778888888876655 677778888888
Q ss_pred ccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcc
Q 001036 1015 SHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG 1069 (1180)
Q Consensus 1015 s~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g 1069 (1180)
++|++++. ..++++++|+.|++++|++++.+| +..++.|+.|++++|++++
T Consensus 339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 88888765 367777888888888888877776 7777888888888887776
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.2e-34 Score=340.37 Aligned_cols=345 Identities=26% Similarity=0.330 Sum_probs=259.3
Q ss_pred CCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCE
Q 001036 639 HKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEF 718 (1180)
Q Consensus 639 ~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~ 718 (1180)
+++++.|+++++.+. .+|. +. .+++|++|++++|.+++..| +.++++|++|++++|.++ .++. +..+++|++
T Consensus 45 l~~l~~L~l~~~~i~-~l~~-~~-~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SIDG-VE-YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCCE
T ss_pred hccccEEecCCCCCc-cCcc-hh-hhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCCE
Confidence 456777777777776 4553 22 36777777777777775544 677777777777777776 3333 346777777
Q ss_pred EEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcC
Q 001036 719 LSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL 798 (1180)
Q Consensus 719 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 798 (1180)
|++++|.+++..+ +..+++|++|++++|.+.+. + .+..+++|+.|+++ |.+.+.. .++++++|++|++++|.+
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcC
Confidence 7777777765433 66677777777777776643 2 36666777777765 3444322 266666677777766666
Q ss_pred CCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhh
Q 001036 799 EGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 878 (1180)
Q Consensus 799 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~ 878 (1180)
++. ..+..+++|++|++++|.+.+ ..| +..+++|+.|++++|.+++. ..+
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~-----------------------~~~---~~~l~~L~~L~l~~n~l~~~--~~l 239 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISD-----------------------ITP---LGILTNLDELSLNGNQLKDI--GTL 239 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCC-----------------------CGG---GGGCTTCCEEECCSSCCCCC--GGG
T ss_pred CCC--hhhccCCCCCEEEecCCcccc-----------------------ccc---ccccCCCCEEECCCCCcccc--hhh
Confidence 543 235566666666666666543 222 56688999999999999864 468
Q ss_pred hcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCch
Q 001036 879 DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSV 958 (1180)
Q Consensus 879 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (1180)
..+++|+.|++++|.+.+..| +..+++|+.|++++|++++..| +..
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~------------------------------ 285 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG------------------------------ 285 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT------------------------------
T ss_pred hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccC------------------------------
Confidence 999999999999999997665 8899999999999999987654 333
Q ss_pred hhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEEC
Q 001036 959 EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL 1038 (1180)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L 1038 (1180)
++.|+.|++++|++++..| ++.+++|+.|+|++|++++..| ++.+++|+.|++
T Consensus 286 -----------------------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 338 (466)
T 1o6v_A 286 -----------------------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338 (466)
T ss_dssp -----------------------CTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred -----------------------CCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence 3479999999999997655 8999999999999999998877 789999999999
Q ss_pred cCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccccccCCccccCCCCCCC
Q 001036 1039 SYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLC 1093 (1180)
Q Consensus 1039 s~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc 1093 (1180)
++|++++. ..+..++.|+.|++++|++++.+| ...+..+....+.+|++..
T Consensus 339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 99999975 578999999999999999999887 6777888888899998765
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8e-35 Score=325.04 Aligned_cols=260 Identities=34% Similarity=0.560 Sum_probs=230.0
Q ss_pred CCCcEEECcCCcCCC--CCcccccCCCCCCeEEccC-CcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEE
Q 001036 762 SSLKGLYLNNNNLSG--KIPRWLGNLKGLQHIVMPK-NHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQV 838 (1180)
Q Consensus 762 ~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L 838 (1180)
.+++.|++++|.+.+ .+|..++++++|++|++++ |.+.+.+|..|.++++|++|++++|++++.+|.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~---------- 119 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD---------- 119 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG----------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH----------
Confidence 467777777777777 7777888888888888884 788888888888888888888888888755443
Q ss_pred EcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCC-CCCEEECcCCc
Q 001036 839 HLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLN-QLQLLDLSDNN 917 (1180)
Q Consensus 839 ~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~ 917 (1180)
.|.++++|++|++++|.+++.+|..|+.+++|++|++++|++++.+|..+..++ +|++|++++|+
T Consensus 120 --------------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 120 --------------FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp --------------GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred --------------HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 677888999999999999989999999999999999999999999999999998 99999999999
Q ss_pred CcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccC
Q 001036 918 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG 997 (1180)
Q Consensus 918 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g 997 (1180)
+++.+|..+..+ .|+.|++++|++++
T Consensus 186 l~~~~~~~~~~l------------------------------------------------------~L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 186 LTGKIPPTFANL------------------------------------------------------NLAFVDLSRNMLEG 211 (313)
T ss_dssp EEEECCGGGGGC------------------------------------------------------CCSEEECCSSEEEE
T ss_pred eeccCChHHhCC------------------------------------------------------cccEEECcCCcccC
Confidence 999888777542 28899999999999
Q ss_pred CCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccc
Q 001036 998 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 1077 (1180)
Q Consensus 998 ~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~ 1077 (1180)
.+|..|+++++|+.|+|++|++++.+|. +..+++|+.|||++|+++|.+|..+..++.|++|++++|+++|.+|. ..+
T Consensus 212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~ 289 (313)
T 1ogq_A 212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGN 289 (313)
T ss_dssp CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STT
T ss_pred cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-Ccc
Confidence 9999999999999999999999988877 88899999999999999999999999999999999999999999999 488
Q ss_pred cccCCccccCCCCCCCCCCCCCCC
Q 001036 1078 FATFNKSSYDGNPFLCGLPLPICR 1101 (1180)
Q Consensus 1078 ~~~~~~~~~~~N~~lc~~~l~~c~ 1101 (1180)
+.++...++.+||++||.|+.+|.
T Consensus 290 l~~L~~l~l~~N~~lc~~p~~~C~ 313 (313)
T 1ogq_A 290 LQRFDVSAYANNKCLCGSPLPACT 313 (313)
T ss_dssp GGGSCGGGTCSSSEEESTTSSCCC
T ss_pred ccccChHHhcCCCCccCCCCCCCC
Confidence 999999999999999999887773
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=9.7e-34 Score=332.41 Aligned_cols=356 Identities=19% Similarity=0.199 Sum_probs=281.7
Q ss_pred CcChhhhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhh
Q 001036 582 TFPKFLYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIG 661 (1180)
Q Consensus 582 ~~p~~l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~ 661 (1180)
..+..+..+++|++|++++|.+.+ +|. +..+++|+.|++++|.+++. +++.+++|++|++++|.+++ +| +.
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~-~~~--l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~--~~ 103 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITD-MTG--IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD--VT 103 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCC-CTT--GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CT
T ss_pred ccccChhHcCCCCEEEccCCCccc-Chh--hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee--cC
Confidence 334567788999999999999887 463 67899999999999999985 48899999999999999995 55 44
Q ss_pred hcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCc
Q 001036 662 DILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLR 741 (1180)
Q Consensus 662 ~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 741 (1180)
.+++|++|++++|.+++. | ++.+++|++|++++|++++ ++ +..+++|++|++++|...+.+ .+..+++|+
T Consensus 104 -~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 104 -PLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp -TCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred -CCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 489999999999999974 4 8999999999999999985 54 357899999999999766555 478999999
Q ss_pred eeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCc
Q 001036 742 WLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNN 821 (1180)
Q Consensus 742 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 821 (1180)
+|++++|++++. | ++.+++|+.|++++|++++. .++.+++|++|++++|++++ +| +..+++|+.|++++|+
T Consensus 174 ~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 174 TLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp EEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSC
T ss_pred EEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCc
Confidence 999999999974 4 88999999999999999865 38899999999999999998 56 8899999999999999
Q ss_pred ccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCc-
Q 001036 822 ISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPI- 900 (1180)
Q Consensus 822 l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~- 900 (1180)
+++..+.. ..+++.|++++| +|+.|++++|.+.+.+| ++.+++|+.|++++|+..+.+|.
T Consensus 245 l~~~~~~~--l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~ 305 (457)
T 3bz5_A 245 LTELDVST--LSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ 305 (457)
T ss_dssp CSCCCCTT--CTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT
T ss_pred CCCcCHHH--CCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC
Confidence 99765433 335555555443 23344455555444444 34445555555555544443332
Q ss_pred -------cccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccc
Q 001036 901 -------QLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNI 973 (1180)
Q Consensus 901 -------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1180)
.+.++++|++|++++|++++. + ++++
T Consensus 306 ~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l-------------------------------------------- 338 (457)
T 3bz5_A 306 AAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHN-------------------------------------------- 338 (457)
T ss_dssp TCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTC--------------------------------------------
T ss_pred CCcceEechhhcccCCEEECCCCccccc-c--cccC--------------------------------------------
Confidence 134457899999999999984 2 4443
Q ss_pred hhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccC
Q 001036 974 AYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVD 1053 (1180)
Q Consensus 974 ~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~ 1053 (1180)
+.|+.||+++|+|+| ++.|..|++++|+++|. +++..|+.+|+++|+++|.||..+.+
T Consensus 339 ---------~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 339 ---------TKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp ---------TTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred ---------CcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 379999999999996 24677789999999987 35567888999999999999987655
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2e-33 Score=325.79 Aligned_cols=335 Identities=21% Similarity=0.200 Sum_probs=203.2
Q ss_pred CCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCcee
Q 001036 664 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 743 (1180)
Q Consensus 664 l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 743 (1180)
+++++.|++++|.++...+..|.++++|++|++++|.++ .++...+..+++|++|++++|.+++..|..+.++++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 345555555555555443334455555555555555554 3333333345555555555555555444445555555555
Q ss_pred eccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCccc
Q 001036 744 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 823 (1180)
Q Consensus 744 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 823 (1180)
++++|.++...+..|.++++|++|++++|++.+..|..++.+++|++|++++|++++. .+..+++|+.|++++|.++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 5555555533333344555555555555555444444455555555555555554432 1233444445555444443
Q ss_pred ccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCcccc
Q 001036 824 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 903 (1180)
Q Consensus 824 ~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 903 (1180)
+ +...++|+.|++++|.++.. |.. ..++|+.|++++|.+++. ..+.
T Consensus 200 -----------------------~------~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~ 245 (390)
T 3o6n_A 200 -----------------------T------LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLL 245 (390)
T ss_dssp -----------------------E------EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGG
T ss_pred -----------------------c------cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHc
Confidence 2 22334677777777777644 322 235677777777777653 4677
Q ss_pred CCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhcc
Q 001036 904 RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLS 983 (1180)
Q Consensus 904 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 983 (1180)
.+++|++|++++|++++..|..|..++
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~----------------------------------------------------- 272 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELEKIMYHPFVKMQ----------------------------------------------------- 272 (390)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCS-----------------------------------------------------
T ss_pred CCCCccEEECCCCcCCCcChhHccccc-----------------------------------------------------
Confidence 777777777777777777666665433
Q ss_pred ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036 984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus 984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
.|+.|+|++|++++ +|..+..+++|++|+|++|+++ .+|..++.+++|+.|++++|++++. | +..++.|+.|+++
T Consensus 273 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~ 347 (390)
T 3o6n_A 273 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLS 347 (390)
T ss_dssp SCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECC
T ss_pred cCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcC
Confidence 67778888887774 5666777888888888888888 5677788888899999999988844 3 6778888999999
Q ss_pred CCcCcccCCCcccccccCCccccCCCCCCCCCC
Q 001036 1064 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 1096 (1180)
Q Consensus 1064 ~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~ 1096 (1180)
+|++++.... ..+..+....+.+++..|.++
T Consensus 348 ~N~~~~~~~~--~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 348 HNDWDCNSLR--ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp SSCEEHHHHH--HHTTTCCTTTBCCCCSCCCTT
T ss_pred CCCccchhHH--HHHHHHHhhcccccCceeccc
Confidence 9988874322 334555666678888888765
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-33 Score=344.03 Aligned_cols=333 Identities=23% Similarity=0.215 Sum_probs=208.3
Q ss_pred cCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEEC
Q 001036 690 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL 769 (1180)
Q Consensus 690 ~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 769 (1180)
+++.+++++|.+. .+|..++..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..|..|+++++|++|++
T Consensus 52 ~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 52 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 3444444444443 344443344444444444444444444444444444444444444444444444444444555555
Q ss_pred cCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCccccccc
Q 001036 770 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQL 849 (1180)
Q Consensus 770 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~ 849 (1180)
++|.+++..+..|+++++|++|++++|.+++..|..|..+++|++|++++|.+++..+ ...++|+.|++++|.+.+
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~l~~L~~L~l~~n~l~~-- 206 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLST-- 206 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG--GGCTTCSEEECCSSCCSE--
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh--hhhhhhhhhhcccCcccc--
Confidence 5444443333333444455555555554444444444445555555555554443211 112344555555554432
Q ss_pred CcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCc
Q 001036 850 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNT 929 (1180)
Q Consensus 850 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 929 (1180)
+...++|+.|++++|.++...+.. .++|+.|+|++|.+++ +..+..+++|+.|+|++|.+++.+|..|+++
T Consensus 207 ----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 207 ----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp ----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 233456778888888777443322 2578888888888875 4677788888888888888888877777654
Q ss_pred ccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCC
Q 001036 930 TLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRI 1009 (1180)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L 1009 (1180)
+ .|+.|+|++|++++ +|..++.+++|
T Consensus 278 ~-----------------------------------------------------~L~~L~Ls~N~l~~-l~~~~~~l~~L 303 (597)
T 3oja_B 278 Q-----------------------------------------------------RLERLYISNNRLVA-LNLYGQPIPTL 303 (597)
T ss_dssp S-----------------------------------------------------SCCEEECTTSCCCE-EECSSSCCTTC
T ss_pred c-----------------------------------------------------CCCEEECCCCCCCC-CCcccccCCCC
Confidence 3 68888888888885 57777888899
Q ss_pred CEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccccccCCccccCCC
Q 001036 1010 QTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGN 1089 (1180)
Q Consensus 1010 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~~N 1089 (1180)
+.|+|++|.++ .+|..++.+++|+.|+|++|++++. | +..++.|+.|++++|+++|..+. ..+..+....+.++
T Consensus 304 ~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~ 377 (597)
T 3oja_B 304 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDA 377 (597)
T ss_dssp CEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCC
T ss_pred cEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccccc
Confidence 99999999998 6788888899999999999999854 3 67788999999999999886532 34566667778899
Q ss_pred CCCCCCC
Q 001036 1090 PFLCGLP 1096 (1180)
Q Consensus 1090 ~~lc~~~ 1096 (1180)
+..|+.+
T Consensus 378 ~~~C~~~ 384 (597)
T 3oja_B 378 DQHCKID 384 (597)
T ss_dssp CCCCCTT
T ss_pred cccCCcc
Confidence 9999864
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.4e-31 Score=310.28 Aligned_cols=315 Identities=22% Similarity=0.266 Sum_probs=262.8
Q ss_pred CCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCC
Q 001036 638 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE 717 (1180)
Q Consensus 638 ~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~ 717 (1180)
.+++++.+++++|.++ .+|..++..+++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence 4578899999999987 788887777999999999999999888889999999999999999998 55555557899999
Q ss_pred EEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCc
Q 001036 718 FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 797 (1180)
Q Consensus 718 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 797 (1180)
+|++++|.++...+..|.++++|++|++++|.+.+..|..+.++++|++|++++|++++. .++.+++|+.|++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 999999999977666789999999999999999998888999999999999999999854 35678999999999998
Q ss_pred CCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchh
Q 001036 798 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 877 (1180)
Q Consensus 798 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~ 877 (1180)
+++ +...++|+.|++++|.+... |. ...++|+.|++++|.+++. .+
T Consensus 198 l~~-----~~~~~~L~~L~l~~n~l~~~------------------------~~---~~~~~L~~L~l~~n~l~~~--~~ 243 (390)
T 3o6n_A 198 LST-----LAIPIAVEELDASHNSINVV------------------------RG---PVNVELTILKLQHNNLTDT--AW 243 (390)
T ss_dssp CSE-----EECCSSCSEEECCSSCCCEE------------------------EC---CCCSSCCEEECCSSCCCCC--GG
T ss_pred ccc-----cCCCCcceEEECCCCeeeec------------------------cc---cccccccEEECCCCCCccc--HH
Confidence 874 23456788899888888632 11 1235788888888888764 57
Q ss_pred hhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCc
Q 001036 878 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGS 957 (1180)
Q Consensus 878 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1180)
+..+++|++|++++|.+++..|..+..+++|++|+|++|++++. |..+..
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~----------------------------- 293 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQP----------------------------- 293 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSC-----------------------------
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCC-----------------------------
Confidence 88888899999999988888888888899999999999988764 222222
Q ss_pred hhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEE
Q 001036 958 VEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 1037 (1180)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ 1037 (1180)
++.|+.|||++|+++ .+|..++.+++|+.|+|++|++++. | +..+++|+.|+
T Consensus 294 ------------------------l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~ 345 (390)
T 3o6n_A 294 ------------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLT 345 (390)
T ss_dssp ------------------------CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEE
T ss_pred ------------------------CCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEE
Confidence 337889999999998 5777888899999999999999854 3 77788999999
Q ss_pred CcCCcCcccCCc
Q 001036 1038 LSYNKLSGKIPR 1049 (1180)
Q Consensus 1038 Ls~N~l~g~ip~ 1049 (1180)
+++|++++.-..
T Consensus 346 l~~N~~~~~~~~ 357 (390)
T 3o6n_A 346 LSHNDWDCNSLR 357 (390)
T ss_dssp CCSSCEEHHHHH
T ss_pred cCCCCccchhHH
Confidence 999999875443
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.8e-33 Score=309.43 Aligned_cols=252 Identities=30% Similarity=0.502 Sum_probs=171.9
Q ss_pred cCceeeccCCcccc--cCCCcCCCCCCCcEEECcC-CcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEE
Q 001036 739 NLRWLLLEGNHFVG--EIPQSLSKCSSLKGLYLNN-NNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQIL 815 (1180)
Q Consensus 739 ~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 815 (1180)
+++.|++++|.+.+ .+|..++++++|++|++++ |.+.+.+|..++++++|++|++++|.+++.+|..|..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 44555555555555 4555555555555555553 55555556666666666666666666665666666666666666
Q ss_pred EccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCC-CCCEEecCCCcc
Q 001036 816 DISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLS-QLSHLNLAHNNL 894 (1180)
Q Consensus 816 ~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~N~l 894 (1180)
++++|++++.+|. .+.++++|++|++++|++++.+|..++.++ +|++|++++|++
T Consensus 131 ~Ls~N~l~~~~p~------------------------~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 131 DFSYNALSGTLPP------------------------SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp ECCSSEEESCCCG------------------------GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred eCCCCccCCcCCh------------------------HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 6666666544332 455566666666666666666666666666 677777777777
Q ss_pred ccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccch
Q 001036 895 EGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIA 974 (1180)
Q Consensus 895 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1180)
++.+|..+..++ |++|++++|++++.+|..|..++
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~-------------------------------------------- 221 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK-------------------------------------------- 221 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS--------------------------------------------
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC--------------------------------------------
Confidence 766777766665 77777777777766666555433
Q ss_pred hcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCC
Q 001036 975 YAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL 1054 (1180)
Q Consensus 975 ~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l 1054 (1180)
.|+.|+|++|++++.+|. +..+++|++|+|++|+++|.+|..|+.+++|+.|||++|+++|.+|.. ..+
T Consensus 222 ---------~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l 290 (313)
T 1ogq_A 222 ---------NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL 290 (313)
T ss_dssp ---------CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG
T ss_pred ---------CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc
Confidence 577777777777766655 777788888888888888888888888888888888888888888876 778
Q ss_pred CCCCEEEcCCCc-Cccc
Q 001036 1055 NTLAIFIVAYNN-LSGK 1070 (1180)
Q Consensus 1055 ~~L~~l~ls~N~-l~g~ 1070 (1180)
+.|+.+++++|+ +.|.
T Consensus 291 ~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 291 QRFDVSAYANNKCLCGS 307 (313)
T ss_dssp GGSCGGGTCSSSEEEST
T ss_pred cccChHHhcCCCCccCC
Confidence 888888888887 6664
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.5e-31 Score=301.09 Aligned_cols=304 Identities=22% Similarity=0.353 Sum_probs=208.9
Q ss_pred CCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCcee
Q 001036 664 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 743 (1180)
Q Consensus 664 l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 743 (1180)
+++|+.|++++|.+.. +| .+..+++|++|++++|+++ .++. +..+++|++|++++|.++.. +.+..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 4556666666665553 22 2555666666666666665 3443 34566666666666666542 246666667777
Q ss_pred eccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCccc
Q 001036 744 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 823 (1180)
Q Consensus 744 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 823 (1180)
++++|.+.+..+ +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|++.
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 777666664432 6667777777777775543333 36677777777777777664433 666777777777777665
Q ss_pred ccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCcccc
Q 001036 824 GSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC 903 (1180)
Q Consensus 824 ~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 903 (1180)
+ ++ .+..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +.
T Consensus 191 ~------------------------~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~ 240 (347)
T 4fmz_A 191 D------------------------IS--PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA 240 (347)
T ss_dssp C------------------------CG--GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred c------------------------cc--cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence 2 12 25667778888888888876544 7778888888888888875444 77
Q ss_pred CCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhcc
Q 001036 904 RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLS 983 (1180)
Q Consensus 904 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 983 (1180)
.+++|++|++++|++++. +.+.. ++
T Consensus 241 ~l~~L~~L~l~~n~l~~~--~~~~~-----------------------------------------------------l~ 265 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISDI--NAVKD-----------------------------------------------------LT 265 (347)
T ss_dssp TCTTCCEEECCSSCCCCC--GGGTT-----------------------------------------------------CT
T ss_pred cCCCCCEEECCCCccCCC--hhHhc-----------------------------------------------------CC
Confidence 888888888888887753 12222 33
Q ss_pred ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036 984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus 984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
+|+.|++++|++++. +.+..+++|+.|++++|++++..|..|+++++|+.|++++|++++..| +..++.|+.|+++
T Consensus 266 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 266 KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA 341 (347)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSS
T ss_pred CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehh
Confidence 788888888888864 457888899999999999998888889999999999999999987766 8888999999999
Q ss_pred CCcCc
Q 001036 1064 YNNLS 1068 (1180)
Q Consensus 1064 ~N~l~ 1068 (1180)
+|+++
T Consensus 342 ~N~i~ 346 (347)
T 4fmz_A 342 NQVIK 346 (347)
T ss_dssp CC---
T ss_pred hhccc
Confidence 98875
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=3.7e-31 Score=323.68 Aligned_cols=315 Identities=22% Similarity=0.270 Sum_probs=232.4
Q ss_pred CCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCE
Q 001036 639 HKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEF 718 (1180)
Q Consensus 639 ~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~ 718 (1180)
+++++.+++++|.+. .+|..++..+++|++|++++|.+++..|..|+++++|++|++++|.+++ +|...+.++++|++
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCE
Confidence 456777788777776 6777766667888888888888887777788888888888888888873 44444456777777
Q ss_pred EEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcC
Q 001036 719 LSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHL 798 (1180)
Q Consensus 719 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 798 (1180)
|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++.. ++.+++|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence 777777777665555677777777777777777766667777777777777777776431 34456666666666665
Q ss_pred CCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhh
Q 001036 799 EGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWI 878 (1180)
Q Consensus 799 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~ 878 (1180)
++ +...++|+.|++++|.+.. ++. . ..++|+.|++++|.+++ +.++
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~------------------------~~~-~--~~~~L~~L~L~~n~l~~--~~~l 250 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINV------------------------VRG-P--VNVELTILKLQHNNLTD--TAWL 250 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCE------------------------EEC-S--CCSCCCEEECCSSCCCC--CGGG
T ss_pred cc-----ccCCchhheeeccCCcccc------------------------ccc-c--cCCCCCEEECCCCCCCC--Chhh
Confidence 43 2233456666666665542 222 1 12578889999998886 4678
Q ss_pred hcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCch
Q 001036 879 DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSV 958 (1180)
Q Consensus 879 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (1180)
..+++|+.|+|++|.+.+.+|..|..+++|++|+|++|++++. |..+..
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~------------------------------ 299 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQP------------------------------ 299 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSC------------------------------
T ss_pred ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-Cccccc------------------------------
Confidence 8899999999999999988899999999999999999998874 333222
Q ss_pred hhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEEC
Q 001036 959 EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDL 1038 (1180)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L 1038 (1180)
++.|+.|||++|.++ .+|..++.+++|+.|+|++|.+++. | ++.+++|+.|++
T Consensus 300 -----------------------l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l 352 (597)
T 3oja_B 300 -----------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL 352 (597)
T ss_dssp -----------------------CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred -----------------------CCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEe
Confidence 337899999999998 6888889999999999999999865 3 677889999999
Q ss_pred cCCcCcccCCcc
Q 001036 1039 SYNKLSGKIPRQ 1050 (1180)
Q Consensus 1039 s~N~l~g~ip~~ 1050 (1180)
++|++++..+..
T Consensus 353 ~~N~~~~~~~~~ 364 (597)
T 3oja_B 353 SHNDWDCNSLRA 364 (597)
T ss_dssp CSSCEEHHHHHH
T ss_pred eCCCCCChhHHH
Confidence 999998765433
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.4e-30 Score=297.00 Aligned_cols=305 Identities=26% Similarity=0.373 Sum_probs=236.6
Q ss_pred CCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCC
Q 001036 638 SHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLE 717 (1180)
Q Consensus 638 ~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~ 717 (1180)
.+++|+.|++++|.+. .+|. +. .+++|++|++++|.+++..+ +.++++|++|++++|.++ .+|. +..+++|+
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~~-~~-~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQG-IE-YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTNLR 113 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCS
T ss_pred hcccccEEEEeCCccc-cchh-hh-hcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCcCC
Confidence 4456666677766665 4543 33 37788888888888775443 778888888888888877 4543 45788888
Q ss_pred EEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCc
Q 001036 718 FLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNH 797 (1180)
Q Consensus 718 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 797 (1180)
+|++++|.+++..+ +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 88888888876543 7788888888888886665444 48888999999999998875443 7888999999999998
Q ss_pred CCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchh
Q 001036 798 LEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 877 (1180)
Q Consensus 798 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~ 877 (1180)
+.+..+ +..+++|+.|++++|.+.+. + .+..+++|+.|++++|.+++..+
T Consensus 189 l~~~~~--~~~l~~L~~L~l~~n~l~~~------------------------~--~~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 189 IEDISP--LASLTSLHYFTAYVNQITDI------------------------T--PVANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCCCGG--GGGCTTCCEEECCSSCCCCC------------------------G--GGGGCTTCCEEECCSSCCCCCGG--
T ss_pred cccccc--ccCCCccceeecccCCCCCC------------------------c--hhhcCCcCCEEEccCCccCCCcc--
Confidence 875443 77888999999988887632 1 25677888999999998886544
Q ss_pred hhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCc
Q 001036 878 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGS 957 (1180)
Q Consensus 878 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1180)
+..+++|++|++++|.+++. ..+..+++|++|++++|++++. +.+..
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~----------------------------- 285 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNN----------------------------- 285 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGG-----------------------------
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcC-----------------------------
Confidence 88889999999999988863 4688899999999999988764 12222
Q ss_pred hhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEE
Q 001036 958 VEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 1037 (1180)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ 1037 (1180)
++.|+.|++++|++++..|..++++++|++|++++|++++..| ++.+++|+.||
T Consensus 286 ------------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 339 (347)
T 4fmz_A 286 ------------------------LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSAD 339 (347)
T ss_dssp ------------------------CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEES
T ss_pred ------------------------CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceee
Confidence 3479999999999998888999999999999999999998777 88899999999
Q ss_pred CcCCcCc
Q 001036 1038 LSYNKLS 1044 (1180)
Q Consensus 1038 Ls~N~l~ 1044 (1180)
+++|+|+
T Consensus 340 l~~N~i~ 346 (347)
T 4fmz_A 340 FANQVIK 346 (347)
T ss_dssp SSCC---
T ss_pred hhhhccc
Confidence 9999986
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.9e-30 Score=290.70 Aligned_cols=288 Identities=22% Similarity=0.289 Sum_probs=183.3
Q ss_pred cCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEEC
Q 001036 690 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL 769 (1180)
Q Consensus 690 ~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 769 (1180)
.++.++++++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5667777777766 666554 256777777777777666667777777777777777777776777777777777777
Q ss_pred cCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccc--cCCCCcCCCcccEEEcCCccccc
Q 001036 770 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISG--SLPSCFYPLSIKQVHLSKNMLHG 847 (1180)
Q Consensus 770 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~~~L~~L~l~~n~~~~ 847 (1180)
++|+++ .+|..+. ++|++|++++|++++..+..|.++++|+.|++++|.++. ..|.
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------------------- 167 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG------------------- 167 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTT-------------------
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcc-------------------
Confidence 777776 5555444 677777777777776666667777777777777777752 2222
Q ss_pred ccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCcc
Q 001036 848 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD 927 (1180)
Q Consensus 848 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 927 (1180)
.+..+ +|+.|++++|++++ +|..+. ++|++|++++|.+++..|..+..+++|++|++++|++++..|..|.
T Consensus 168 -----~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 168 -----AFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp -----SSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred -----cccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 34444 55555666665553 333322 4566666666666655556666666666666666666655554443
Q ss_pred CcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCC
Q 001036 928 NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLT 1007 (1180)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~ 1007 (1180)
.++ .|+.|+|++|+++ .+|..+..++
T Consensus 239 ~l~-----------------------------------------------------~L~~L~L~~N~l~-~lp~~l~~l~ 264 (332)
T 2ft3_A 239 FLP-----------------------------------------------------TLRELHLDNNKLS-RVPAGLPDLK 264 (332)
T ss_dssp GCT-----------------------------------------------------TCCEEECCSSCCC-BCCTTGGGCT
T ss_pred CCC-----------------------------------------------------CCCEEECCCCcCe-ecChhhhcCc
Confidence 322 5666666666666 5666666666
Q ss_pred CCCEEeCccccccccccccccCC------CCCCEEECcCCcCc--ccCCccccCCCCCCEEEcCCCc
Q 001036 1008 RIQTLNLSHNNLTGTIPLTFSNL------RHIESLDLSYNKLS--GKIPRQLVDLNTLAIFIVAYNN 1066 (1180)
Q Consensus 1008 ~L~~L~Ls~N~l~g~~p~~~~~l------~~L~~L~Ls~N~l~--g~ip~~l~~l~~L~~l~ls~N~ 1066 (1180)
+|++|++++|++++..+..|... ..|+.|++++|.++ +..|..|..++.|+.+++++|+
T Consensus 265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 66666666666666555555543 45667777777666 5566666667777777776663
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=7e-30 Score=288.54 Aligned_cols=291 Identities=24% Similarity=0.312 Sum_probs=208.7
Q ss_pred cCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEEC
Q 001036 690 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL 769 (1180)
Q Consensus 690 ~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 769 (1180)
+++.++++++.++ .+|..+ .+.+++|++++|++++..+..|.++++|++|++++|.+++..|..|+++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 5666777776666 566544 256777777777777666667777777777777777777777777777777888888
Q ss_pred cCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCccccccc
Q 001036 770 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQL 849 (1180)
Q Consensus 770 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~ 849 (1180)
++|+++ .+|..+. ++|++|++++|.+++..+..+.++++|+.|++++|++... +..
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~~ 163 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------GIE 163 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------GBC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc---------------------CcC
Confidence 777776 5555443 6777888888877776666777778888888877777521 111
Q ss_pred CcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCc
Q 001036 850 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNT 929 (1180)
Q Consensus 850 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 929 (1180)
+ ..|.++++|+.|++++|.++. +|..+. ++|++|++++|++++..|..+..+++|++|++++|++++..+..|..+
T Consensus 164 ~-~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 164 N-GAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp T-TGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred h-hhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence 2 256777778888888887774 444333 678888888888887777788888888888888888877766655443
Q ss_pred ccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCC
Q 001036 930 TLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRI 1009 (1180)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L 1009 (1180)
+ .|+.|+|++|+++ .+|..+..+++|
T Consensus 240 ~-----------------------------------------------------~L~~L~L~~N~l~-~lp~~l~~l~~L 265 (330)
T 1xku_A 240 P-----------------------------------------------------HLRELHLNNNKLV-KVPGGLADHKYI 265 (330)
T ss_dssp T-----------------------------------------------------TCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred C-----------------------------------------------------CCCEEECCCCcCc-cCChhhccCCCc
Confidence 2 6788888888887 677788888888
Q ss_pred CEEeCccccccccccccccCC------CCCCEEECcCCcCcc--cCCccccCCCCCCEEEcCCCc
Q 001036 1010 QTLNLSHNNLTGTIPLTFSNL------RHIESLDLSYNKLSG--KIPRQLVDLNTLAIFIVAYNN 1066 (1180)
Q Consensus 1010 ~~L~Ls~N~l~g~~p~~~~~l------~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~l~ls~N~ 1066 (1180)
++|++++|++++..+..|... ..++.|++++|.+.. ..|..|..+..++.+++++|+
T Consensus 266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 888888888887777777543 678888888888763 556777888888888888874
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.4e-29 Score=284.33 Aligned_cols=230 Identities=30% Similarity=0.350 Sum_probs=133.3
Q ss_pred cCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEEC
Q 001036 690 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL 769 (1180)
Q Consensus 690 ~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 769 (1180)
.+++|++++|.++ .++...+..+++|++|++++|++++..|..+.++++|++|++++|.++ .+|..+. ++|++|++
T Consensus 55 ~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 55 DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 4444444444444 222222234455555555555555444555555556666666666555 3333332 56666666
Q ss_pred cCCcCCCCCcccccCCCCCCeEEccCCcCC--CCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCccccc
Q 001036 770 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLE--GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG 847 (1180)
Q Consensus 770 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~ 847 (1180)
++|++.+..+..+..+++|++|++++|.++ +..|..+..+ +|+.|++++|++++ +|..+. .+|++|++++|.+.+
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~-~~L~~L~l~~n~i~~ 207 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP-ETLNELHLDHNKIQA 207 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC-SSCSCCBCCSSCCCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc-CCCCEEECCCCcCCc
Confidence 666666554555666666666666666664 3455566655 67777777777663 343222 344555555555543
Q ss_pred ccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCcc
Q 001036 848 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD 927 (1180)
Q Consensus 848 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 927 (1180)
..+. .|.++++|+.|++++|++++..|.+|..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.
T Consensus 208 ~~~~-~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 208 IELE-DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp CCTT-SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred cCHH-HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 3333 5666677777777777777666666777777777777777776 5666666677777777777777665555554
Q ss_pred C
Q 001036 928 N 928 (1180)
Q Consensus 928 ~ 928 (1180)
.
T Consensus 286 ~ 286 (332)
T 2ft3_A 286 P 286 (332)
T ss_dssp C
T ss_pred c
Confidence 3
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.8e-29 Score=281.68 Aligned_cols=253 Identities=24% Similarity=0.342 Sum_probs=157.7
Q ss_pred CCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEE
Q 001036 640 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFL 719 (1180)
Q Consensus 640 ~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L 719 (1180)
.+++.++++++.++ .+|..+ .+.+++|++++|.+++..+..|.++++|++|++++|++++..|..+ ..+++|++|
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L 105 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERL 105 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEE
T ss_pred CCCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCCCEE
Confidence 46777777777776 566543 2566677777777666555566666666666666666653323332 344555555
Q ss_pred EccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCC
Q 001036 720 SLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE 799 (1180)
Q Consensus 720 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 799 (1180)
++++|.++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.
T Consensus 106 ~Ls~n~l~-------------------------~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 106 YLSKNQLK-------------------------ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp ECCSSCCS-------------------------BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCC-------------------------ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence 55555444 2232222 45555555555555444445555566666666665553
Q ss_pred C--CCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchh
Q 001036 800 G--PIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDW 877 (1180)
Q Consensus 800 ~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~ 877 (1180)
. ..+..+.++++|++|++++|++++ +|..+. .+|+.|++++|.+.+..|. .|.++++|+.|++++|.+++..+..
T Consensus 159 ~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~-~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~ 235 (330)
T 1xku_A 159 SSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP-PSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGS 235 (330)
T ss_dssp GGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC-TTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccCcChhhccCCCCcCEEECCCCcccc-CCcccc-ccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCceeChhh
Confidence 2 445556666666666666666652 333322 4555555555555544444 6777888888888888888777777
Q ss_pred hhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccC
Q 001036 878 IDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 928 (1180)
Q Consensus 878 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 928 (1180)
+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..
T Consensus 236 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~ 285 (330)
T 1xku_A 236 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285 (330)
T ss_dssp GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred ccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence 888888888888888887 67777888888888888888887766665543
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=4.7e-33 Score=331.31 Aligned_cols=362 Identities=19% Similarity=0.130 Sum_probs=232.3
Q ss_pred CCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCc----cCCccccCcccCcEEEccCcccccccChhhhhcCC-
Q 001036 640 KRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDG----SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCV- 714 (1180)
Q Consensus 640 ~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~- 714 (1180)
+++++|++++|.++......++..+++|++|++++|.++. .++..+..+++|++|++++|.+.+..+..++..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4677888888887744444445557889999999998874 34667777888999999999887555555655565
Q ss_pred ---CCCEEEccCCcccc----cccccccCCccCceeeccCCcccccCCCcC-----CCCCCCcEEECcCCcCCCCC----
Q 001036 715 ---NLEFLSLSNNSLKG----HIFSRIFSLRNLRWLLLEGNHFVGEIPQSL-----SKCSSLKGLYLNNNNLSGKI---- 778 (1180)
Q Consensus 715 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~l~~n~l~~~~---- 778 (1180)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888888874 457777888888888888888765433322 22457888888888777533
Q ss_pred cccccCCCCCCeEEccCCcCCCCCCcccc-----CCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCccc
Q 001036 779 PRWLGNLKGLQHIVMPKNHLEGPIPVEFC-----RLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGT 853 (1180)
Q Consensus 779 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~ 853 (1180)
+..+..+++|++|++++|.+....+..+. ..++|++|++++|.+++.... .++. .
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~-~ 222 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR-------------------DLCG-I 222 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-------------------HHHH-H
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-------------------HHHH-H
Confidence 45556667777777777776544333332 245677777777766532000 1233 4
Q ss_pred ccCCCCCcEEECcCccCcccc-----chhhhcCCCCCEEecCCCccccC----CCccccCCCCCCEEECcCCcCcccCCC
Q 001036 854 FFNCSSLVTLDLSYNYLNGSI-----PDWIDGLSQLSHLNLAHNNLEGE----VPIQLCRLNQLQLLDLSDNNLHGLIPS 924 (1180)
Q Consensus 854 ~~~~~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 924 (1180)
+..+++|+.|++++|.+++.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|++++..+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 555666777777777665432 22223466677777777766643 455566667777777777766543222
Q ss_pred CccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCC----CC
Q 001036 925 CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGH----IP 1000 (1180)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~----~p 1000 (1180)
.+...- ....+.|+.|+|++|.+++. +|
T Consensus 303 ~l~~~l------------------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 303 LLCETL------------------------------------------------LEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp HHHHHH------------------------------------------------TSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred HHHHHh------------------------------------------------ccCCccceeeEcCCCCCchHHHHHHH
Confidence 211100 00012567777777777654 45
Q ss_pred ccccCCCCCCEEeCccccccccccccccC-----CCCCCEEECcCCcCcc----cCCccccCCCCCCEEEcCCCcCcc
Q 001036 1001 PQIGNLTRIQTLNLSHNNLTGTIPLTFSN-----LRHIESLDLSYNKLSG----KIPRQLVDLNTLAIFIVAYNNLSG 1069 (1180)
Q Consensus 1001 ~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~-----l~~L~~L~Ls~N~l~g----~ip~~l~~l~~L~~l~ls~N~l~g 1069 (1180)
..+..+++|++|+|++|++++..+..+.. .++|+.|+|++|++++ .+|..+..++.|++|++++|++++
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 55566677777777777777655554442 5577777777777775 667777777777777777777664
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=6.6e-32 Score=321.43 Aligned_cols=207 Identities=17% Similarity=0.131 Sum_probs=120.8
Q ss_pred cccEEEcCCCcccccCChhhhhcCCcccEEEccCCcccCC----CCCCCCCCCCccEEEccCCcccccCChhhhhcCC--
Q 001036 592 ELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGP----FRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILP-- 665 (1180)
Q Consensus 592 ~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~-- 665 (1180)
+++.|+++++++.......++..+++|+.|++++|.+++. ++..+..+++|++|++++|.+.+..+..++..++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 4556666666655444344455667777777777776532 2334455677888888888776544555555455
Q ss_pred --CCcEEEccCCcCCc----cCCccccCcccCcEEEccCcccccccChhhhh----cCCCCCEEEccCCcccccc----c
Q 001036 666 --SLVYFNISMNALDG----SIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAM----CCVNLEFLSLSNNSLKGHI----F 731 (1180)
Q Consensus 666 --~L~~L~ls~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~----~~~~L~~L~L~~n~l~~~~----~ 731 (1180)
+|++|++++|.++. .+|..+..+++|++|++++|.+++..+..+.. ..++|++|++++|.+++.. +
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 68888888888874 45777788888888888888876443333322 2446777777777766533 3
Q ss_pred ccccCCccCceeeccCCcccccCCCcCC-----CCCCCcEEECcCCcCCCC----CcccccCCCCCCeEEccCCcC
Q 001036 732 SRIFSLRNLRWLLLEGNHFVGEIPQSLS-----KCSSLKGLYLNNNNLSGK----IPRWLGNLKGLQHIVMPKNHL 798 (1180)
Q Consensus 732 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l 798 (1180)
..+..+++|++|++++|.+....+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 4444556666666666665543222222 133555555555555432 233344444444444444443
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.9e-28 Score=279.46 Aligned_cols=282 Identities=22% Similarity=0.234 Sum_probs=188.1
Q ss_pred cccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEE
Q 001036 688 VIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGL 767 (1180)
Q Consensus 688 l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 767 (1180)
|+.....+.+++.++ .+|..++ ++|++|++++|.+++..+..+.++++|++|++++|.+++..|..|.++++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 444455677777777 7776553 578888888888877666678888888888888888887777778888888888
Q ss_pred ECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCC-ccccCCCCCCEEEccCCc-ccccCCCCcCCCcccEEEcCCccc
Q 001036 768 YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP-VEFCRLDSLQILDISDNN-ISGSLPSCFYPLSIKQVHLSKNML 845 (1180)
Q Consensus 768 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~~~L~~L~l~~n~~ 845 (1180)
++++|++++..+..++++++|++|++++|++++..+ ..+..+++|++|++++|+ +.+
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~--------------------- 164 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK--------------------- 164 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE---------------------
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc---------------------
Confidence 888888875555557778888888888887775443 467777777777777774 332
Q ss_pred ccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCC
Q 001036 846 HGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSC 925 (1180)
Q Consensus 846 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 925 (1180)
++...|.++++|+.|++++|.+++..|..++.+++|++|++++|++....+..+..+++|++|++++|++++..+..
T Consensus 165 ---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 241 (353)
T 2z80_A 165 ---IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241 (353)
T ss_dssp ---ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred ---cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc
Confidence 22225666777777777777777777777777777777777777775333333445677777777777766554433
Q ss_pred ccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccC
Q 001036 926 FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGN 1005 (1180)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~ 1005 (1180)
+... ..
T Consensus 242 l~~~--------------------------------------------------------------------------~~ 247 (353)
T 2z80_A 242 LSTG--------------------------------------------------------------------------ET 247 (353)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred cccc--------------------------------------------------------------------------cc
Confidence 2210 11
Q ss_pred CCCCCEEeCccccccc----cccccccCCCCCCEEECcCCcCcccCCcc-ccCCCCCCEEEcCCCcCcccCC
Q 001036 1006 LTRIQTLNLSHNNLTG----TIPLTFSNLRHIESLDLSYNKLSGKIPRQ-LVDLNTLAIFIVAYNNLSGKIP 1072 (1180)
Q Consensus 1006 l~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~-l~~l~~L~~l~ls~N~l~g~ip 1072 (1180)
...++.++|++|.+++ .+|..++++++|+.||+++|+++ .+|.. |..+++|++|++++|+++|.+|
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 2233344444444433 45666777777777777777777 45544 4677777777777777777666
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.4e-27 Score=266.66 Aligned_cols=232 Identities=23% Similarity=0.296 Sum_probs=150.8
Q ss_pred CCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCC--CCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEc
Q 001036 763 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP--IPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHL 840 (1180)
Q Consensus 763 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l 840 (1180)
+|++|++++|+++...+..+.++++|++|++++|.++.. .|..+..+++|++|++++|.+.
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~----------------- 91 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI----------------- 91 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-----------------
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-----------------
Confidence 444555555554422222344455555555555544311 2334444555555555555543
Q ss_pred CCcccccccCcccccCCCCCcEEECcCccCccccc-hhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCc
Q 001036 841 SKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP-DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH 919 (1180)
Q Consensus 841 ~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 919 (1180)
.+|. .+.++++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++
T Consensus 92 -------~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 92 -------TMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp -------EEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred -------cChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 2233 45566666777777776665444 45666777777777777777666777777777777777777776
Q ss_pred c-cCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCC
Q 001036 920 G-LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGH 998 (1180)
Q Consensus 920 ~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ 998 (1180)
+ .+|..+..++ .|+.|||++|++++.
T Consensus 164 ~~~~~~~~~~l~-----------------------------------------------------~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 164 ENFLPDIFTELR-----------------------------------------------------NLTFLDLSQCQLEQL 190 (306)
T ss_dssp GGEECSCCTTCT-----------------------------------------------------TCCEEECTTSCCCEE
T ss_pred cccchhHHhhCc-----------------------------------------------------CCCEEECCCCCcCCc
Confidence 5 4555554432 677777777777777
Q ss_pred CCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCC-CCCEEEcCCCcCcccCC
Q 001036 999 IPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN-TLAIFIVAYNNLSGKIP 1072 (1180)
Q Consensus 999 ~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~-~L~~l~ls~N~l~g~ip 1072 (1180)
.|..|.++++|++|+|++|++++..+..|..+++|+.|||++|++++.+|..+..++ .|++|++++|++++..+
T Consensus 191 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 191 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 777778888888888888888877777788888888888888888888888888774 78888888888877543
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.4e-28 Score=276.47 Aligned_cols=279 Identities=19% Similarity=0.229 Sum_probs=162.7
Q ss_pred CCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEE
Q 001036 713 CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 792 (1180)
Q Consensus 713 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 792 (1180)
|+.....+.+++.++. +|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..|..++++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 3444445666666553 333322 3555555555555554444555555555555555555544444455555555555
Q ss_pred ccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCcc
Q 001036 793 MPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 872 (1180)
Q Consensus 793 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 872 (1180)
+++|++++..+..+.++++ |++|++++|++++
T Consensus 107 Ls~n~l~~~~~~~~~~l~~------------------------------------------------L~~L~L~~n~l~~ 138 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSS------------------------------------------------LTFLNLLGNPYKT 138 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTT------------------------------------------------CSEEECTTCCCSS
T ss_pred CCCCcCCcCCHhHhCCCcc------------------------------------------------CCEEECCCCCCcc
Confidence 5555554333333444444 4444444444443
Q ss_pred ccc-hhhhcCCCCCEEecCCC-ccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccc
Q 001036 873 SIP-DWIDGLSQLSHLNLAHN-NLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFS 950 (1180)
Q Consensus 873 ~~p-~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 950 (1180)
..+ ..|.++++|++|++++| .+.+..|..+.++++|++|++++|++++..|..|++++
T Consensus 139 l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-------------------- 198 (353)
T 2z80_A 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ-------------------- 198 (353)
T ss_dssp SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCS--------------------
T ss_pred cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccc--------------------
Confidence 222 24444555555555554 24433344555555555555555555555554444322
Q ss_pred cCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCcccccccccccccc--
Q 001036 951 ISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFS-- 1028 (1180)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~-- 1028 (1180)
+|+.|++++|+++...+..+..+++|+.|++++|++++..+..+.
T Consensus 199 ---------------------------------~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 245 (353)
T 2z80_A 199 ---------------------------------NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245 (353)
T ss_dssp ---------------------------------EEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----
T ss_pred ---------------------------------cCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccc
Confidence 455555555555432222234456666666666666665554433
Q ss_pred -CCCCCCEEECcCCcCcc----cCCccccCCCCCCEEEcCCCcCcccCCCc-ccccccCCccccCCCCCCCCCC
Q 001036 1029 -NLRHIESLDLSYNKLSG----KIPRQLVDLNTLAIFIVAYNNLSGKIPEW-TAQFATFNKSSYDGNPFLCGLP 1096 (1180)
Q Consensus 1029 -~l~~L~~L~Ls~N~l~g----~ip~~l~~l~~L~~l~ls~N~l~g~ip~~-~~~~~~~~~~~~~~N~~lc~~~ 1096 (1180)
....++.++|++|.+++ .+|..+..+++|+.|++++|+++ .+|.. +..+..+...++.+||+.|.|+
T Consensus 246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 35778999999999987 58889999999999999999999 56654 4778889999999999999986
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=8.2e-28 Score=268.52 Aligned_cols=259 Identities=22% Similarity=0.253 Sum_probs=158.4
Q ss_pred CceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCC--CCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEc
Q 001036 740 LRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG--KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDI 817 (1180)
Q Consensus 740 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 817 (1180)
|++|++++|.++...+..|.++++|++|++++|.++. ..|..+..+++|++|++++|.+. .+|..+..+++|++|++
T Consensus 30 l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEEC
T ss_pred CCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEEC
Confidence 3444444444433222334444444455554444441 12344445555555555555554 34445556666666666
Q ss_pred cCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCcccc-
Q 001036 818 SDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG- 896 (1180)
Q Consensus 818 ~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~- 896 (1180)
++|++++..+ ...+..+++|+.|++++|.+++..|..|.++++|++|++++|.+.+
T Consensus 109 ~~n~l~~~~~-----------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 109 QHSNLKQMSE-----------------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp TTSEEESSTT-----------------------TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCCccccccc-----------------------chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 6666653211 0145566667777777777766666667777777777777777765
Q ss_pred CCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhc
Q 001036 897 EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA 976 (1180)
Q Consensus 897 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 976 (1180)
.+|..+..+++|++|++++|++++..|..|..++
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~---------------------------------------------- 199 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS---------------------------------------------- 199 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT----------------------------------------------
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC----------------------------------------------
Confidence 4666777777777777777777776666655433
Q ss_pred ccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCC-CCCCEEECcCCcCcccCCc--cccC
Q 001036 977 YQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL-RHIESLDLSYNKLSGKIPR--QLVD 1053 (1180)
Q Consensus 977 ~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l-~~L~~L~Ls~N~l~g~ip~--~l~~ 1053 (1180)
.|+.|+|++|++++..+..+..+++|++|+|++|++++..|..+..+ ++|+.|+|++|++++..+. ....
T Consensus 200 -------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~ 272 (306)
T 2z66_A 200 -------SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 272 (306)
T ss_dssp -------TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHH
T ss_pred -------CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHH
Confidence 57777777777776666677777888888888888888788777777 4788888888888765331 1122
Q ss_pred CCCCCEEEcCCCcCcccCCCcc
Q 001036 1054 LNTLAIFIVAYNNLSGKIPEWT 1075 (1180)
Q Consensus 1054 l~~L~~l~ls~N~l~g~ip~~~ 1075 (1180)
+...+.+.+..+++.+..|...
T Consensus 273 l~~~~~~~~~~~~~~C~~p~~~ 294 (306)
T 2z66_A 273 IKDQRQLLVEVERMECATPSDK 294 (306)
T ss_dssp HHHTGGGBSCGGGCBEEESGGG
T ss_pred HHhhhhhhccccccccCCchhh
Confidence 3334445566677777777643
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.7e-26 Score=271.74 Aligned_cols=252 Identities=22% Similarity=0.261 Sum_probs=198.3
Q ss_pred cCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEcc
Q 001036 739 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDIS 818 (1180)
Q Consensus 739 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 818 (1180)
..+.++..++.++ .+|..+. ++++.|++++|++.+..+..|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4566777777776 4555443 577788888888776666777777888888888887777667777777777777777
Q ss_pred CCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCc-cccC
Q 001036 819 DNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNN-LEGE 897 (1180)
Q Consensus 819 ~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~ 897 (1180)
+|++++ ++...|.++++|+.|+|++|.+++..+..|.++++|++|++++|+ +...
T Consensus 121 ~n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i 176 (440)
T 3zyj_A 121 DNRLTT------------------------IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI 176 (440)
T ss_dssp SSCCSS------------------------CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred CCcCCe------------------------eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCccee
Confidence 777762 333367888899999999999988777888999999999999854 4444
Q ss_pred CCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcc
Q 001036 898 VPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 977 (1180)
Q Consensus 898 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 977 (1180)
.+..|.++++|++|+|++|+++.. |. +..
T Consensus 177 ~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~------------------------------------------------- 205 (440)
T 3zyj_A 177 SEGAFEGLSNLRYLNLAMCNLREI-PN-LTP------------------------------------------------- 205 (440)
T ss_dssp CTTTTTTCSSCCEEECTTSCCSSC-CC-CTT-------------------------------------------------
T ss_pred CcchhhcccccCeecCCCCcCccc-cc-cCC-------------------------------------------------
Confidence 445788899999999999988743 31 222
Q ss_pred cchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCC
Q 001036 978 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 1057 (1180)
Q Consensus 978 ~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L 1057 (1180)
+++|+.|||++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|||++|+|++..+..+..++.|
T Consensus 206 ----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 206 ----LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp ----CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred ----CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 3378889999999998888889999999999999999998888889999999999999999998777888888999
Q ss_pred CEEEcCCCcCcccCC
Q 001036 1058 AIFIVAYNNLSGKIP 1072 (1180)
Q Consensus 1058 ~~l~ls~N~l~g~ip 1072 (1180)
+.|++++|++.+...
T Consensus 282 ~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 282 ERIHLHHNPWNCNCD 296 (440)
T ss_dssp CEEECCSSCEECSST
T ss_pred CEEEcCCCCccCCCC
Confidence 999999998876554
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.9e-26 Score=272.31 Aligned_cols=252 Identities=21% Similarity=0.220 Sum_probs=208.3
Q ss_pred cCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEcc
Q 001036 739 NLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDIS 818 (1180)
Q Consensus 739 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 818 (1180)
..+.++.+++.++ .+|..+. +++++|++++|++++..|..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3456777777776 4555443 578888888888887777888888888888888888887777888888888888888
Q ss_pred CCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCC-ccccC
Q 001036 819 DNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHN-NLEGE 897 (1180)
Q Consensus 819 ~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~ 897 (1180)
+|++++ +|...|.++++|++|+|++|++++..+..|.++++|++|++++| .+...
T Consensus 132 ~n~l~~------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i 187 (452)
T 3zyi_A 132 DNWLTV------------------------IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI 187 (452)
T ss_dssp SSCCSB------------------------CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred CCcCCc------------------------cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc
Confidence 887763 33336888999999999999999887888999999999999995 45444
Q ss_pred CCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcc
Q 001036 898 VPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAY 977 (1180)
Q Consensus 898 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 977 (1180)
.+..|.++++|++|+|++|++++. |. +..
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~------------------------------------------------- 216 (452)
T 3zyi_A 188 SEGAFEGLFNLKYLNLGMCNIKDM-PN-LTP------------------------------------------------- 216 (452)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSSC-CC-CTT-------------------------------------------------
T ss_pred ChhhccCCCCCCEEECCCCccccc-cc-ccc-------------------------------------------------
Confidence 455788999999999999999864 21 222
Q ss_pred cchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCC
Q 001036 978 QGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTL 1057 (1180)
Q Consensus 978 ~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L 1057 (1180)
+++|+.|||++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|||++|+|++..+..+..+++|
T Consensus 217 ----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 217 ----LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp ----CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred ----cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 3478999999999999889999999999999999999999999999999999999999999998888888999999
Q ss_pred CEEEcCCCcCcccCC
Q 001036 1058 AIFIVAYNNLSGKIP 1072 (1180)
Q Consensus 1058 ~~l~ls~N~l~g~ip 1072 (1180)
+.|++++|++.+...
T Consensus 293 ~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 293 VELHLHHNPWNCDCD 307 (452)
T ss_dssp CEEECCSSCEECSTT
T ss_pred CEEEccCCCcCCCCC
Confidence 999999999887655
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=6.3e-27 Score=262.55 Aligned_cols=234 Identities=21% Similarity=0.310 Sum_probs=159.0
Q ss_pred CccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEE
Q 001036 737 LRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILD 816 (1180)
Q Consensus 737 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 816 (1180)
.+.++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 578899999999998 67878888999999999999998 88888999999999999999988 7788899999999999
Q ss_pred ccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCcccc
Q 001036 817 ISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEG 896 (1180)
Q Consensus 817 l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 896 (1180)
+++|++.+.+|..+.. . .++. .|.++++|+.|++++|+++ .+|..++.+++|++|++++|++++
T Consensus 157 L~~n~~~~~~p~~~~~-----~---------~~~~-~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 157 IRACPELTELPEPLAS-----T---------DASG-EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EEEETTCCCCCSCSEE-----E---------C-CC-CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCCCCccccChhHhh-----c---------cchh-hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence 9998888777764321 0 0111 3455566666666666665 455555555555555555555553
Q ss_pred CCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhc
Q 001036 897 EVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA 976 (1180)
Q Consensus 897 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 976 (1180)
+|..+..+++|++
T Consensus 221 -l~~~l~~l~~L~~------------------------------------------------------------------ 233 (328)
T 4fcg_A 221 -LGPAIHHLPKLEE------------------------------------------------------------------ 233 (328)
T ss_dssp -CCGGGGGCTTCCE------------------------------------------------------------------
T ss_pred -CchhhccCCCCCE------------------------------------------------------------------
Confidence 3334555555554
Q ss_pred ccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCC
Q 001036 977 YQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNT 1056 (1180)
Q Consensus 977 ~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~ 1056 (1180)
|+|++|++.+.+|..++++++|++|+|++|++.+.+|..++++++|+.|||++|++.|.+|..+.+++.
T Consensus 234 -----------L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 234 -----------LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp -----------EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred -----------EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 445555555555555555556666666666666666666666666666666666666666666666666
Q ss_pred CCEEEcCCCcC
Q 001036 1057 LAIFIVAYNNL 1067 (1180)
Q Consensus 1057 L~~l~ls~N~l 1067 (1180)
|+.++++.|.+
T Consensus 303 L~~l~l~~~~~ 313 (328)
T 4fcg_A 303 NCIILVPPHLQ 313 (328)
T ss_dssp TCEEECCGGGS
T ss_pred ceEEeCCHHHH
Confidence 66666655543
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=9.3e-27 Score=261.19 Aligned_cols=188 Identities=20% Similarity=0.248 Sum_probs=165.6
Q ss_pred cCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeE
Q 001036 712 CCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHI 791 (1180)
Q Consensus 712 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 791 (1180)
..++++.|++++|.++ .+|..++.+++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..++++++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3588999999999998 67888999999999999999999 88999999999999999999999 889999999999999
Q ss_pred EccCCcCCCCCCccccC---------CCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcE
Q 001036 792 VMPKNHLEGPIPVEFCR---------LDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVT 862 (1180)
Q Consensus 792 ~l~~n~l~~~~~~~~~~---------l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 862 (1180)
++++|++.+.+|..+.. +++|++|++++|+++ .+|. .+.++++|+.
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~------------------------~lp~-~l~~l~~L~~ 210 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR------------------------SLPA-SIANLQNLKS 210 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC------------------------CCCG-GGGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC------------------------cchH-hhcCCCCCCE
Confidence 99999999999987764 788888888888776 3444 6888999999
Q ss_pred EECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccC
Q 001036 863 LDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 928 (1180)
Q Consensus 863 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 928 (1180)
|++++|++++ +|..++.+++|++|++++|++.+.+|..+..+++|++|+|++|++.+.+|..+++
T Consensus 211 L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~ 275 (328)
T 4fcg_A 211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275 (328)
T ss_dssp EEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG
T ss_pred EEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc
Confidence 9999999995 6667999999999999999999999998888888888888887777666655543
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=7.3e-26 Score=267.26 Aligned_cols=251 Identities=24% Similarity=0.235 Sum_probs=218.8
Q ss_pred CCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEcc
Q 001036 715 NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 794 (1180)
Q Consensus 715 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 794 (1180)
....++.++..++. +|..+. +++++|+|++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 46788888888874 555443 689999999999999999999999999999999999998888899999999999999
Q ss_pred CCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCc-cCccc
Q 001036 795 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN-YLNGS 873 (1180)
Q Consensus 795 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~ 873 (1180)
+|++++..+..|..+++|++|++++|++.+ +|...|.++++|+.|++++| .+...
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i 187 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIES------------------------IPSYAFNRVPSLMRLDLGELKKLEYI 187 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcce------------------------eCHhHHhcCCcccEEeCCCCCCcccc
Confidence 999998888889999999999999998873 33347889999999999994 55555
Q ss_pred cchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCC
Q 001036 874 IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISG 953 (1180)
Q Consensus 874 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1180)
.+..|.++++|++|++++|++++. | .+..+++|+.|+|++|++++..|..|.+++
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----------------------- 242 (452)
T 3zyi_A 188 SEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLS----------------------- 242 (452)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCT-----------------------
T ss_pred ChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCcc-----------------------
Confidence 556799999999999999999854 4 588899999999999999998888776644
Q ss_pred CCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCC
Q 001036 954 PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 1033 (1180)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L 1033 (1180)
.|+.|+|++|++++..|..|.++++|+.|+|++|+|++..+..|..+++|
T Consensus 243 ------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 292 (452)
T 3zyi_A 243 ------------------------------SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292 (452)
T ss_dssp ------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred ------------------------------CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence 79999999999999999999999999999999999998888889999999
Q ss_pred CEEECcCCcCcccC
Q 001036 1034 ESLDLSYNKLSGKI 1047 (1180)
Q Consensus 1034 ~~L~Ls~N~l~g~i 1047 (1180)
+.|+|++|.+.+.-
T Consensus 293 ~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 293 VELHLHHNPWNCDC 306 (452)
T ss_dssp CEEECCSSCEECST
T ss_pred CEEEccCCCcCCCC
Confidence 99999999987543
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.3e-26 Score=253.67 Aligned_cols=167 Identities=28% Similarity=0.281 Sum_probs=91.9
Q ss_pred cccCCCCCcEEECcCcc-CccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCccc
Q 001036 853 TFFNCSSLVTLDLSYNY-LNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTL 931 (1180)
Q Consensus 853 ~~~~~~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 931 (1180)
.|.++++|++|++++|. ++...|..|..+++|++|++++|++++..|..+..+++|++|++++|++++..+..|+.++
T Consensus 75 ~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~- 153 (285)
T 1ozn_A 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG- 153 (285)
T ss_dssp TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-
T ss_pred hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC-
Confidence 34444555555555554 4444445555555555555555555554455555555555555555555544444343322
Q ss_pred ccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCE
Q 001036 932 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQT 1011 (1180)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~ 1011 (1180)
+|+.|+|++|++++..+..|.++++|+.
T Consensus 154 ----------------------------------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 154 ----------------------------------------------------NLTHLFLHGNRISSVPERAFRGLHSLDR 181 (285)
T ss_dssp ----------------------------------------------------TCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ----------------------------------------------------CccEEECCCCcccccCHHHhcCccccCE
Confidence 4555555555555444445555666666
Q ss_pred EeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCC
Q 001036 1012 LNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 1072 (1180)
Q Consensus 1012 L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip 1072 (1180)
|+|++|++++..|..|+++++|+.|++++|++++..|..+..++.|+.|++++|++.+..+
T Consensus 182 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred EECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 6666666666556666666666666666666665554556666666666666666655444
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2e-26 Score=254.11 Aligned_cols=252 Identities=23% Similarity=0.235 Sum_probs=172.2
Q ss_pred eeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCc
Q 001036 742 WLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNN 821 (1180)
Q Consensus 742 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 821 (1180)
+++.+++.++. +|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|.++++|++|++++|+
T Consensus 15 ~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp EEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred EEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 44444444442 23222 2455666666666654444555666666666666666665556666666666666666665
Q ss_pred -ccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCc
Q 001036 822 -ISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPI 900 (1180)
Q Consensus 822 -l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 900 (1180)
+.+ ++...|.++++|++|++++|.+++..|..|.++++|++|++++|++++..+.
T Consensus 92 ~l~~------------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 147 (285)
T 1ozn_A 92 QLRS------------------------VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147 (285)
T ss_dssp TCCC------------------------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred Cccc------------------------cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh
Confidence 432 2222566777777777877777777777777788888888888888776666
Q ss_pred cccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccch
Q 001036 901 QLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGR 980 (1180)
Q Consensus 901 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 980 (1180)
.+..+++|++|++++|++++..+..|..++
T Consensus 148 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------------------------------------------------- 177 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLH-------------------------------------------------- 177 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCT--------------------------------------------------
T ss_pred HhccCCCccEEECCCCcccccCHHHhcCcc--------------------------------------------------
Confidence 777888888888888888776665565433
Q ss_pred hccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEE
Q 001036 981 VLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIF 1060 (1180)
Q Consensus 981 ~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l 1060 (1180)
.|+.|++++|++++..|..|+++++|+.|++++|++++..|..|..+++|+.|++++|++++..+.. .-...++.+
T Consensus 178 ---~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~ 253 (285)
T 1ozn_A 178 ---SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKF 253 (285)
T ss_dssp ---TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHC
T ss_pred ---ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhc
Confidence 6888888888888888888888888999999999998877778888899999999999888765532 111223444
Q ss_pred EcCCCcCcccCCCc
Q 001036 1061 IVAYNNLSGKIPEW 1074 (1180)
Q Consensus 1061 ~ls~N~l~g~ip~~ 1074 (1180)
..+.|.+.+..|+.
T Consensus 254 ~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 254 RGSSSEVPCSLPQR 267 (285)
T ss_dssp CSEECCCBEEESGG
T ss_pred ccccCccccCCchH
Confidence 56677777777763
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.1e-25 Score=264.71 Aligned_cols=250 Identities=28% Similarity=0.275 Sum_probs=214.6
Q ss_pred CCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEcc
Q 001036 715 NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 794 (1180)
Q Consensus 715 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 794 (1180)
....++.+++.++ .+|..+. ++++.|+|++|++.+..+..|.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4678888888887 4555543 689999999999998888899999999999999999987777889999999999999
Q ss_pred CCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCc-cCccc
Q 001036 795 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN-YLNGS 873 (1180)
Q Consensus 795 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~ 873 (1180)
+|++++..+..|..+++|++|++++|++.+ ++...|.++++|+.|++++| .++..
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~------------------------~~~~~~~~l~~L~~L~l~~~~~l~~i 176 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIES------------------------IPSYAFNRIPSLRRLDLGELKRLSYI 176 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCE------------------------ECTTTTTTCTTCCEEECCCCTTCCEE
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccc------------------------cCHHHhhhCcccCEeCCCCCCCccee
Confidence 999997777789999999999999998873 33337888999999999985 45545
Q ss_pred cchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCC
Q 001036 874 IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISG 953 (1180)
Q Consensus 874 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1180)
.+..|.++++|++|++++|+++ .+| .+..+++|+.|+|++|++++..|..|.+++
T Consensus 177 ~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----------------------- 231 (440)
T 3zyj_A 177 SEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM----------------------- 231 (440)
T ss_dssp CTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCT-----------------------
T ss_pred CcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCc-----------------------
Confidence 5567899999999999999998 455 478899999999999999998888876644
Q ss_pred CCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCC
Q 001036 954 PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHI 1033 (1180)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L 1033 (1180)
.|+.|+|++|++++..|..|.++++|+.|+|++|+|++..+..|..+++|
T Consensus 232 ------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 281 (440)
T 3zyj_A 232 ------------------------------HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281 (440)
T ss_dssp ------------------------------TCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTC
T ss_pred ------------------------------cCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCC
Confidence 78999999999999889999999999999999999998888889999999
Q ss_pred CEEECcCCcCccc
Q 001036 1034 ESLDLSYNKLSGK 1046 (1180)
Q Consensus 1034 ~~L~Ls~N~l~g~ 1046 (1180)
+.|+|++|.+.+.
T Consensus 282 ~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 282 ERIHLHHNPWNCN 294 (440)
T ss_dssp CEEECCSSCEECS
T ss_pred CEEEcCCCCccCC
Confidence 9999999998754
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=4.3e-28 Score=270.79 Aligned_cols=254 Identities=23% Similarity=0.294 Sum_probs=151.5
Q ss_pred cCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcC-CCCCccccc-------CCCCCCeEEccCCcCCCCCCccc
Q 001036 735 FSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNL-SGKIPRWLG-------NLKGLQHIVMPKNHLEGPIPVEF 806 (1180)
Q Consensus 735 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l-~~~~p~~~~-------~l~~L~~L~l~~n~l~~~~~~~~ 806 (1180)
+..++|++|++++|.+ .+|..+... |+.|++++|.+ .+.+|..+. ++++|++|++++|++++.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3445555555555555 444433332 55555555555 233444443 56666666666666666666654
Q ss_pred --cCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCC
Q 001036 807 --CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQL 884 (1180)
Q Consensus 807 --~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L 884 (1180)
..+++|++|++++|++++. |..+. .++ ...+++|++|++++|++++..|..|+++++|
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~----------------~l~---~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLA----------------ELQ---QWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHH----------------HHH---TTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHH----------------HHH---HhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 5666666666666666644 32110 000 0012566666666666666666666666666
Q ss_pred CEEecCCCccccC--CCccc--cCCCCCCEEECcCCcCcccC--CCCccCcccccccCCCCCCCCCCccccccCCCCCch
Q 001036 885 SHLNLAHNNLEGE--VPIQL--CRLNQLQLLDLSDNNLHGLI--PSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSV 958 (1180)
Q Consensus 885 ~~L~L~~N~l~~~--~p~~~--~~l~~L~~L~Ls~N~l~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (1180)
++|++++|++.+. .|..+ ..+++|++|+|++|++++.. +..+
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-------------------------------- 223 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL-------------------------------- 223 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH--------------------------------
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH--------------------------------
Confidence 6666666666544 22333 56677777777777665321 0000
Q ss_pred hhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCC-ccccCCCCCCEEeCccccccccccccccCCCCCCEEE
Q 001036 959 EKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIP-PQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLD 1037 (1180)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p-~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~ 1037 (1180)
...++.|+.|||++|++++.+| ..+..+++|++|+|++|+|+ .+|..+. ++|+.||
T Consensus 224 --------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~ 280 (312)
T 1wwl_A 224 --------------------AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLD 280 (312)
T ss_dssp --------------------HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEE
T ss_pred --------------------HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEE
Confidence 0113467777777777777664 44566777777777777777 6676665 6777777
Q ss_pred CcCCcCcccCCccccCCCCCCEEEcCCCcCcc
Q 001036 1038 LSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG 1069 (1180)
Q Consensus 1038 Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g 1069 (1180)
|++|+|++. |. +..++.|++|++++|++++
T Consensus 281 Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 281 LSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 777777755 55 7777777777777777765
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=3.6e-27 Score=263.28 Aligned_cols=209 Identities=24% Similarity=0.260 Sum_probs=125.0
Q ss_pred ccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCccc-cccccccc-------CCccCceeeccCCcccccCCC
Q 001036 685 FGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLK-GHIFSRIF-------SLRNLRWLLLEGNHFVGEIPQ 756 (1180)
Q Consensus 685 ~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~p~ 756 (1180)
+++.++|+.|++++|.+ .+|..+... |+.|++++|.++ ..+|..+. ++++|++|++++|.+++.+|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 34455566666666666 556555432 556666666662 33444443 567777777777777777777
Q ss_pred cC--CCCCCCcEEECcCCcCCCCCcccccCC-----CCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC
Q 001036 757 SL--SKCSSLKGLYLNNNNLSGKIPRWLGNL-----KGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSC 829 (1180)
Q Consensus 757 ~~--~~l~~L~~L~l~~n~l~~~~p~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 829 (1180)
.+ ..+++|++|++++|++++. |..++.+ ++|++|++++|++.+..|..|..+++|++|++++|++.+.++
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-- 190 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG-- 190 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH--
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH--
Confidence 65 7777888888888888765 6666665 777777777777776666777777777777777776654311
Q ss_pred cCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCcc---ccchhhhcCCCCCEEecCCCccccCCC-ccccCC
Q 001036 830 FYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG---SIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRL 905 (1180)
Q Consensus 830 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~---~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l 905 (1180)
.++...+.++++|++|++++|++++ .....+.++++|++|++++|++++.+| ..+..+
T Consensus 191 ------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 191 ------------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp ------------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred ------------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 0111123566677777777776662 112333455566666666665555443 233334
Q ss_pred CCCCEEECcCCcCc
Q 001036 906 NQLQLLDLSDNNLH 919 (1180)
Q Consensus 906 ~~L~~L~Ls~N~l~ 919 (1180)
++|++|+|++|+++
T Consensus 253 ~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK 266 (312)
T ss_dssp TTCCEEECTTSCCS
T ss_pred CCCCEEECCCCccC
Confidence 44444444444444
No 63
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=3.5e-28 Score=299.20 Aligned_cols=332 Identities=12% Similarity=0.046 Sum_probs=168.8
Q ss_pred CcccCcEEEccCcccccccCh---hhhhcCCCCCEEEccCCccc----ccccccccCCccCceeeccCCcccccCCCcCC
Q 001036 687 NVIFLQFLDLSNNKLTGEIPD---HLAMCCVNLEFLSLSNNSLK----GHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLS 759 (1180)
Q Consensus 687 ~l~~L~~L~l~~n~l~~~ip~---~~~~~~~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 759 (1180)
++++|++|++++|.+++.-.. .+...+++|++|++++|.++ +.++..+.++++|++|++++|.+.+ +|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 344455555555544322111 12233445555555555444 1222233344455555555554443 334444
Q ss_pred CCCCCcEEECcCCcCC---CCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC--cCCCc
Q 001036 760 KCSSLKGLYLNNNNLS---GKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSC--FYPLS 834 (1180)
Q Consensus 760 ~l~~L~~L~l~~n~l~---~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~--~~~~~ 834 (1180)
++++|+.|+++++... +..+..+..+++|+.++++++. .+.+|..+..+++|++|++++|.+++..... ...++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 4455555555432211 1222334444555555554432 2234444444555555555555543222111 12234
Q ss_pred ccEEEcCCcccccccCcccccCCCCCcEEECc-----------CccCccc-cchhhhcCCCCCEEecCCCccccCCCccc
Q 001036 835 IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS-----------YNYLNGS-IPDWIDGLSQLSHLNLAHNNLEGEVPIQL 902 (1180)
Q Consensus 835 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~-----------~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 902 (1180)
|+.|+++++...+.++. .+.++++|+.|+++ .|.+++. ++....++++|++|+++.|.+++..+..+
T Consensus 320 L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l 398 (592)
T 3ogk_B 320 LEVLETRNVIGDRGLEV-LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI 398 (592)
T ss_dssp CCEEEEEGGGHHHHHHH-HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH
T ss_pred CCEEeccCccCHHHHHH-HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH
Confidence 55555542222222222 34556777777777 3455543 23334557777777777777776666665
Q ss_pred cC-CCCCCEEECc----CCcCcccCCC-CccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhc
Q 001036 903 CR-LNQLQLLDLS----DNNLHGLIPS-CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYA 976 (1180)
Q Consensus 903 ~~-l~~L~~L~Ls----~N~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 976 (1180)
.. +++|+.|+++ .|.+++.+.+ .+..
T Consensus 399 ~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~------------------------------------------------ 430 (592)
T 3ogk_B 399 GTYLKNLCDFRLVLLDREERITDLPLDNGVRS------------------------------------------------ 430 (592)
T ss_dssp HHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH------------------------------------------------
T ss_pred HhhCCCCcEEEEeecCCCccccCchHHHHHHH------------------------------------------------
Confidence 54 7777777775 4455432110 0000
Q ss_pred ccchhccccceEEccCC--cccCCCCcccc-CCCCCCEEeCccccccc-cccccccCCCCCCEEECcCCcCccc-CCccc
Q 001036 977 YQGRVLSLLAGLDLSCN--KLVGHIPPQIG-NLTRIQTLNLSHNNLTG-TIPLTFSNLRHIESLDLSYNKLSGK-IPRQL 1051 (1180)
Q Consensus 977 ~~~~~l~~L~~LdLs~N--~l~g~~p~~~~-~l~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~L~Ls~N~l~g~-ip~~l 1051 (1180)
....+++|+.|++++| .+++..+..++ .+++|+.|+|++|++++ .+|..+..+++|+.|++++|++++. ++...
T Consensus 431 -~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 509 (592)
T 3ogk_B 431 -LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV 509 (592)
T ss_dssp -HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred -HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence 0012446777777643 35555444443 36778888888887776 3455566777788888888877655 33444
Q ss_pred cCCCCCCEEEcCCCcCccc
Q 001036 1052 VDLNTLAIFIVAYNNLSGK 1070 (1180)
Q Consensus 1052 ~~l~~L~~l~ls~N~l~g~ 1070 (1180)
..+++|++|++++|++++.
T Consensus 510 ~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 510 TKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHCSSCCEEEEESCBCCTT
T ss_pred HhcCccCeeECcCCcCCHH
Confidence 5677788888888877654
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1e-27 Score=268.40 Aligned_cols=267 Identities=21% Similarity=0.208 Sum_probs=182.6
Q ss_pred CCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccC
Q 001036 716 LEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 795 (1180)
Q Consensus 716 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 795 (1180)
++..+++.+.+.......+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..| +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 3344555555554444444455566666666666655555555555556666666555553332 45555555555555
Q ss_pred CcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccc
Q 001036 796 NHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP 875 (1180)
Q Consensus 796 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 875 (1180)
|++++.. ..++|++|++++|++ .+..+. .+++|+.|++++|++++..|
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l-----------------------~~~~~~----~~~~L~~L~l~~N~l~~~~~ 137 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNI-----------------------SRVSCS----RGQGKKNIYLANNKITMLRD 137 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCC-----------------------SEEEEC----CCSSCEEEECCSSCCCSGGG
T ss_pred Ccccccc-----CCCCcCEEECCCCcc-----------------------CCcCcc----ccCCCCEEECCCCCCCCccc
Confidence 5544221 124444444444444 433222 35678889999999988878
Q ss_pred hhhhcCCCCCEEecCCCccccCCCcccc-CCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCC
Q 001036 876 DWIDGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGP 954 (1180)
Q Consensus 876 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1180)
..++.+++|++|++++|.+++..|..+. .+++|++|+|++|++++..+..+
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---------------------------- 189 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV---------------------------- 189 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC----------------------------
T ss_pred hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc----------------------------
Confidence 8888888999999999998887777764 68889999999998876522111
Q ss_pred CCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCC
Q 001036 955 QGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE 1034 (1180)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~ 1034 (1180)
++.|+.|||++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+
T Consensus 190 ---------------------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~ 240 (317)
T 3o53_A 190 ---------------------------FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240 (317)
T ss_dssp ---------------------------CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCC
T ss_pred ---------------------------cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCC
Confidence 3368889999999985 4555888899999999999998 5788888889999
Q ss_pred EEECcCCcCc-ccCCccccCCCCCCEEEcCC-CcCcccCCC
Q 001036 1035 SLDLSYNKLS-GKIPRQLVDLNTLAIFIVAY-NNLSGKIPE 1073 (1180)
Q Consensus 1035 ~L~Ls~N~l~-g~ip~~l~~l~~L~~l~ls~-N~l~g~ip~ 1073 (1180)
.|++++|+++ +.+|..+..++.|+.++++. +.++|..|.
T Consensus 241 ~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 241 HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp EEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred EEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 9999999998 77888888888888888884 467766554
No 65
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=4.1e-28 Score=298.65 Aligned_cols=397 Identities=12% Similarity=0.065 Sum_probs=269.9
Q ss_pred hcCCcccEEEccCCcccCCCCCCCCC-C-CCccEEEccCCc-ccccCChhhhhcCCCCcEEEccCCcCCcc----CCccc
Q 001036 613 ENNTKLEFLYLVNDSLAGPFRLPIHS-H-KRLRFLDVSNNN-FQGHIPVEIGDILPSLVYFNISMNALDGS----IPSSF 685 (1180)
Q Consensus 613 ~~~~~L~~L~l~~n~~~~~~~~~~~~-~-~~L~~L~l~~n~-l~~~ip~~~~~~l~~L~~L~ls~n~l~~~----~p~~~ 685 (1180)
..+++|+.|++++|.+++.....+.. + .+|++|++++|. ++...-..+...+++|++|++++|.+++. ++..+
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 36677777777777665443333332 2 337788887775 22111112223478888888888877655 33345
Q ss_pred cCcccCcEEEccCccccc----ccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCccc---ccCCCcC
Q 001036 686 GNVIFLQFLDLSNNKLTG----EIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFV---GEIPQSL 758 (1180)
Q Consensus 686 ~~l~~L~~L~l~~n~l~~----~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~p~~~ 758 (1180)
.++++|+.|++++|.+++ .++. ++..+++|++|++++|.+.+ ++..+..+++|++|+++++... +..+..+
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 567788888888888762 2222 23467888888888888775 5577778888888888754322 2344567
Q ss_pred CCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCC-ccccCCCCCCEEEccCCcccc-cCCCCc-CCCcc
Q 001036 759 SKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP-VEFCRLDSLQILDISDNNISG-SLPSCF-YPLSI 835 (1180)
Q Consensus 759 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~-~~p~~~-~~~~L 835 (1180)
..+++|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|++|+++ +.+.. .++... ..++|
T Consensus 267 ~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTC
T ss_pred hccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCC
Confidence 7788888888887543 4677778888888888888888654333 335678888888888 44432 222211 23578
Q ss_pred cEEEcCC-----------cccccccCcccccCCCCCcEEECcCccCccccchhhhc-CCCCCEEecC----CCccccC--
Q 001036 836 KQVHLSK-----------NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG-LSQLSHLNLA----HNNLEGE-- 897 (1180)
Q Consensus 836 ~~L~l~~-----------n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~----~N~l~~~-- 897 (1180)
++|++++ |.+++.-....+.++++|+.|+++.|.+++..+..++. +++|+.|+++ .|.+++.
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 8888883 45543322213556899999999999999888888876 9999999996 6778764
Q ss_pred ---CCccccCCCCCCEEECcCCc--CcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhcccc
Q 001036 898 ---VPIQLCRLNQLQLLDLSDNN--LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKN 972 (1180)
Q Consensus 898 ---~p~~~~~l~~L~~L~Ls~N~--l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 972 (1180)
++..+.++++|++|++++|. +++..+..+
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~---------------------------------------------- 458 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI---------------------------------------------- 458 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH----------------------------------------------
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH----------------------------------------------
Confidence 34447789999999998643 443222111
Q ss_pred chhcccchhccccceEEccCCcccC-CCCccccCCCCCCEEeCcccccccc-ccccccCCCCCCEEECcCCcCcccCCcc
Q 001036 973 IAYAYQGRVLSLLAGLDLSCNKLVG-HIPPQIGNLTRIQTLNLSHNNLTGT-IPLTFSNLRHIESLDLSYNKLSGKIPRQ 1050 (1180)
Q Consensus 973 ~~~~~~~~~l~~L~~LdLs~N~l~g-~~p~~~~~l~~L~~L~Ls~N~l~g~-~p~~~~~l~~L~~L~Ls~N~l~g~ip~~ 1050 (1180)
...+++|+.|++++|++++ .++..+.++++|++|+|++|.+++. ++..+..+++|+.|+|++|++++.--..
T Consensus 459 ------~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~ 532 (592)
T 3ogk_B 459 ------GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDL 532 (592)
T ss_dssp ------HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTG
T ss_pred ------HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHH
Confidence 1124579999999999986 3455678899999999999999866 4455567999999999999998764444
Q ss_pred cc-CCCCCCEEEcCCC
Q 001036 1051 LV-DLNTLAIFIVAYN 1065 (1180)
Q Consensus 1051 l~-~l~~L~~l~ls~N 1065 (1180)
+. .++.+....+..+
T Consensus 533 l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 533 MQMARPYWNIELIPSR 548 (592)
T ss_dssp GGGCCTTEEEEEECCC
T ss_pred HHHhCCCcEEEEecCc
Confidence 43 4566655554443
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=8.1e-27 Score=276.29 Aligned_cols=233 Identities=21% Similarity=0.203 Sum_probs=125.5
Q ss_pred CCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCC
Q 001036 763 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 842 (1180)
Q Consensus 763 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~ 842 (1180)
+|+.|++++|.+++..|..|+.+++|++|++++|.+++.+| +..+++|++|++++|.+++..+. ++|+.|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcC
Confidence 44444444444444444444455555555555555444333 44555555555555555432111 2333344444
Q ss_pred cccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCcccc-CCCCCCEEECcCCcCccc
Q 001036 843 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGL 921 (1180)
Q Consensus 843 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~ 921 (1180)
|.+.+..+. .+++|+.|++++|.+++..|..|+.+++|+.|+|++|.+++.+|..+. .+++|++|+|++|.+++.
T Consensus 109 N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 109 NNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 433332221 235667777777777766666666777777777777777666666655 566667777666666654
Q ss_pred CCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCc
Q 001036 922 IPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP 1001 (1180)
Q Consensus 922 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~ 1001 (1180)
.+..+ ++.|+.|||++|+|++. |+
T Consensus 185 ~~~~~-------------------------------------------------------l~~L~~L~Ls~N~l~~~-~~ 208 (487)
T 3oja_A 185 KGQVV-------------------------------------------------------FAKLKTLDLSSNKLAFM-GP 208 (487)
T ss_dssp ECCCC-------------------------------------------------------CTTCCEEECCSSCCCEE-CG
T ss_pred ccccc-------------------------------------------------------CCCCCEEECCCCCCCCC-CH
Confidence 22110 22456666666666643 33
Q ss_pred cccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCc-ccCCccccCCCCCCEEEc
Q 001036 1002 QIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS-GKIPRQLVDLNTLAIFIV 1062 (1180)
Q Consensus 1002 ~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~l~l 1062 (1180)
.++.+++|+.|+|++|+|++ +|..++.+++|+.|++++|.++ +.+|..+..++.|..+++
T Consensus 209 ~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 209 EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 35556666666666666663 4555555666666666666655 445555555544444443
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=8.2e-25 Score=263.50 Aligned_cols=67 Identities=25% Similarity=0.350 Sum_probs=42.6
Q ss_pred ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCC
Q 001036 984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN 1055 (1180)
Q Consensus 984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~ 1055 (1180)
+|+.|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..|+++++|+.|+|++|++++.+|..+..++
T Consensus 242 ~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 242 ELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 4666666666666 3444 4556666666666666 5566666666666666666666666666655443
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=4.9e-27 Score=262.88 Aligned_cols=270 Identities=21% Similarity=0.214 Sum_probs=226.9
Q ss_pred cCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEEC
Q 001036 690 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL 769 (1180)
Q Consensus 690 ~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 769 (1180)
.++..+++.+.+. ..+..++..+++|++|++++|++++..|..+..+++|++|++++|.+++..| +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 4667788888887 6666777778899999999999999888999999999999999999997765 899999999999
Q ss_pred cCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCccccccc
Q 001036 770 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQL 849 (1180)
Q Consensus 770 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~ 849 (1180)
++|++++ +| ..++|++|++++|++++..+.. +++|++|++++|++++..|
T Consensus 88 s~n~l~~-l~----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~---------------------- 137 (317)
T 3o53_A 88 NNNYVQE-LL----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRD---------------------- 137 (317)
T ss_dssp CSSEEEE-EE----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGG----------------------
T ss_pred cCCcccc-cc----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccc----------------------
Confidence 9999874 22 3489999999999998765443 5778888888888874322
Q ss_pred CcccccCCCCCcEEECcCccCccccchhh-hcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccC
Q 001036 850 KEGTFFNCSSLVTLDLSYNYLNGSIPDWI-DGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 928 (1180)
Q Consensus 850 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 928 (1180)
..+..+++|+.|++++|.+++..|..+ ..+++|++|++++|++++. | ....+++|++|+|++|++++..+. +..
T Consensus 138 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~-~~~ 212 (317)
T 3o53_A 138 --LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPE-FQS 212 (317)
T ss_dssp --BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGG-GGG
T ss_pred --hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchhh-hcc
Confidence 267788899999999999998877777 4789999999999999865 3 233589999999999999976543 443
Q ss_pred cccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCC
Q 001036 929 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTR 1008 (1180)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~ 1008 (1180)
++.|+.|||++|+++ .+|..+..+++
T Consensus 213 -----------------------------------------------------l~~L~~L~L~~N~l~-~l~~~~~~l~~ 238 (317)
T 3o53_A 213 -----------------------------------------------------AAGVTWISLRNNKLV-LIEKALRFSQN 238 (317)
T ss_dssp -----------------------------------------------------GTTCSEEECTTSCCC-EECTTCCCCTT
T ss_pred -----------------------------------------------------cCcccEEECcCCccc-chhhHhhcCCC
Confidence 347999999999999 57888999999
Q ss_pred CCEEeCcccccc-ccccccccCCCCCCEEECc-CCcCcccCCccc
Q 001036 1009 IQTLNLSHNNLT-GTIPLTFSNLRHIESLDLS-YNKLSGKIPRQL 1051 (1180)
Q Consensus 1009 L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~Ls-~N~l~g~ip~~l 1051 (1180)
|+.|++++|.++ +.+|..++.+++|+.|+++ .+.++|..|...
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~ 283 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCC
T ss_pred CCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhcc
Confidence 999999999999 8899999999999999999 557787776543
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.1e-24 Score=259.94 Aligned_cols=268 Identities=28% Similarity=0.341 Sum_probs=191.5
Q ss_pred cCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEEC
Q 001036 690 FLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYL 769 (1180)
Q Consensus 690 ~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 769 (1180)
.++.|++++|.++ .+|..++ ++|++|++++|.++. +|. .+++|++|+|++|++++ +|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 4677777777776 6776553 667777777777763 333 45666777777776663 333 4566666666
Q ss_pred cCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCccccccc
Q 001036 770 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQL 849 (1180)
Q Consensus 770 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~ 849 (1180)
++|++++ +|. .+++|+.|++++|++++ +|.. +++|++|++++|++++ +
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~------------------------l 156 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS------------------------L 156 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC------------------------C
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC------------------------c
Confidence 6666653 333 34566666666666653 3322 2555566665555542 2
Q ss_pred CcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCc
Q 001036 850 KEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNT 929 (1180)
Q Consensus 850 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 929 (1180)
|. .+++|+.|++++|.+++ +| ..+++|+.|++++|++++ +|.. +++|+.|++++|.++.. |..
T Consensus 157 ~~----~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l-~~~---- 219 (622)
T 3g06_A 157 PA----LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSL-PAL---- 219 (622)
T ss_dssp CC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC-CCC----
T ss_pred CC----ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccccc-CCC----
Confidence 32 23578888888888885 45 456888999999998885 4443 47899999999988743 221
Q ss_pred ccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCC
Q 001036 930 TLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRI 1009 (1180)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L 1009 (1180)
+++|+.|+|++|+|++ +| ..+++|
T Consensus 220 ----------------------------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L 243 (622)
T 3g06_A 220 ----------------------------------------------------PSGLKELIVSGNRLTS-LP---VLPSEL 243 (622)
T ss_dssp ----------------------------------------------------CTTCCEEECCSSCCSC-CC---CCCTTC
T ss_pred ----------------------------------------------------CCCCCEEEccCCccCc-CC---CCCCcC
Confidence 1268999999999996 66 556889
Q ss_pred CEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccccc
Q 001036 1010 QTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFA 1079 (1180)
Q Consensus 1010 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~ 1079 (1180)
+.|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..+.++++|+.|++++|+++|.+|..+..+.
T Consensus 244 ~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 244 KELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred cEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 99999999999 5666 6789999999999999 8899999999999999999999999887555443
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.3e-26 Score=272.44 Aligned_cols=235 Identities=23% Similarity=0.210 Sum_probs=169.1
Q ss_pred CCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEcc
Q 001036 715 NLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMP 794 (1180)
Q Consensus 715 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 794 (1180)
+|++|++++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++. | ..++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEECc
Confidence 56666666666665555555555666666666665554443 55555555555555555421 1 11445555555
Q ss_pred CCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCcccc
Q 001036 795 KNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSI 874 (1180)
Q Consensus 795 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 874 (1180)
+|.++ +..+.. .++|+.|++++|.+++..|. .|.++++|+.|+|++|.+++..
T Consensus 108 ~N~l~------------------------~~~~~~--l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 108 NNNIS------------------------RVSCSR--GQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp SSCCC------------------------CEEECC--CSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEE
T ss_pred CCcCC------------------------CCCccc--cCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcC
Confidence 55444 333322 13455555555555554444 7888999999999999999989
Q ss_pred chhhh-cCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCC
Q 001036 875 PDWID-GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISG 953 (1180)
Q Consensus 875 p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1180)
|..+. .+++|+.|+|++|.+++..+ ...+++|++|+|++|++++.+|. |..
T Consensus 161 ~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~------------------------- 212 (487)
T 3oja_A 161 FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQS------------------------- 212 (487)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGG-------------------------
T ss_pred hHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcC-------------------------
Confidence 98886 79999999999999997633 44699999999999999986654 443
Q ss_pred CCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCcccccc-ccccccccCCCC
Q 001036 954 PQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT-GTIPLTFSNLRH 1032 (1180)
Q Consensus 954 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~-g~~p~~~~~l~~ 1032 (1180)
++.|+.|||++|.|++ +|..++.+++|+.|++++|.++ +.+|..++.++.
T Consensus 213 ----------------------------l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~ 263 (487)
T 3oja_A 213 ----------------------------AAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (487)
T ss_dssp ----------------------------GTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred ----------------------------CCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCC
Confidence 3379999999999996 7888999999999999999999 888999999999
Q ss_pred CCEEECcC
Q 001036 1033 IESLDLSY 1040 (1180)
Q Consensus 1033 L~~L~Ls~ 1040 (1180)
|+.++++.
T Consensus 264 L~~l~~~~ 271 (487)
T 3oja_A 264 VQTVAKQT 271 (487)
T ss_dssp HHHHHHHH
T ss_pred CcEEeccc
Confidence 98888863
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=9.4e-24 Score=231.55 Aligned_cols=209 Identities=25% Similarity=0.308 Sum_probs=121.6
Q ss_pred CCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECc
Q 001036 787 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 866 (1180)
Q Consensus 787 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~ 866 (1180)
+|++|++++|.+++..+..|.++++|++|++++|++++. +...|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~~~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI------------------------EDGAYQSLSHLSTLILT 84 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE------------------------CTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc------------------------CHHHccCCcCCCEEECC
Confidence 455555555555444444555555555555555555422 11244555555555555
Q ss_pred CccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCccc-CCCCccCcccccccCCCCCCCCCC
Q 001036 867 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL-IPSCFDNTTLHESYNNNSSPDKPF 945 (1180)
Q Consensus 867 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~ 945 (1180)
+|.+++..|..|.++++|++|++++|++.+..+..+..+++|++|++++|++++. +|..|++++
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~--------------- 149 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT--------------- 149 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT---------------
T ss_pred CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCC---------------
Confidence 5555555555555555566666666555555444555556666666666655542 344443322
Q ss_pred ccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCC----EEeCccccccc
Q 001036 946 KTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQ----TLNLSHNNLTG 1021 (1180)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~----~L~Ls~N~l~g 1021 (1180)
+|+.|+|++|++++..+..+..+++|+ .|++++|++++
T Consensus 150 --------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~ 191 (276)
T 2z62_A 150 --------------------------------------NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (276)
T ss_dssp --------------------------------------TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE
T ss_pred --------------------------------------CCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc
Confidence 455666666666655555555555555 67777777776
Q ss_pred cccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCC
Q 001036 1022 TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus 1022 ~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
..|..+.. .+|+.|+|++|++++..+..+..+++|+.|++++|++++..|.
T Consensus 192 ~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 192 IQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp ECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred cCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 55555544 3677777777777766666667777777777777777777764
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.9e-23 Score=229.14 Aligned_cols=208 Identities=26% Similarity=0.294 Sum_probs=178.9
Q ss_pred cccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEEC
Q 001036 834 SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 913 (1180)
Q Consensus 834 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 913 (1180)
++++|++++|.+.+ ++...|.++++|++|++++|++++..+..|.++++|++|++++|++++..+..+.++++|++|++
T Consensus 29 ~l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccc-cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 44555555555543 33337889999999999999999888889999999999999999999988899999999999999
Q ss_pred cCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCC
Q 001036 914 SDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCN 993 (1180)
Q Consensus 914 s~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N 993 (1180)
++|++++..+..+++++ .|+.|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~l~~n 134 (276)
T 2z62_A 108 VETNLASLENFPIGHLK-----------------------------------------------------TLKELNVAHN 134 (276)
T ss_dssp TTSCCCCSTTCCCTTCT-----------------------------------------------------TCCEEECCSS
T ss_pred CCCCccccCchhcccCC-----------------------------------------------------CCCEEECcCC
Confidence 99999987776665533 7999999999
Q ss_pred cccCC-CCccccCCCCCCEEeCccccccccccccccCCCCCC----EEECcCCcCcccCCccccCCCCCCEEEcCCCcCc
Q 001036 994 KLVGH-IPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIE----SLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLS 1068 (1180)
Q Consensus 994 ~l~g~-~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~----~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~ 1068 (1180)
++++. +|..++++++|++|+|++|++++..+..|..+.+|+ .|++++|++++..|..+.. .+|+.|++++|+++
T Consensus 135 ~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~ 213 (276)
T 2z62_A 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLK 213 (276)
T ss_dssp CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCS
T ss_pred ccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCcee
Confidence 99874 699999999999999999999998888888888877 9999999999766655554 48999999999999
Q ss_pred ccCCCcccccccCCccccCCCCCCCCCC
Q 001036 1069 GKIPEWTAQFATFNKSSYDGNPFLCGLP 1096 (1180)
Q Consensus 1069 g~ip~~~~~~~~~~~~~~~~N~~lc~~~ 1096 (1180)
+..+..+..+..+...++.+||+.|+|+
T Consensus 214 ~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 214 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ecCHhHhcccccccEEEccCCcccccCC
Confidence 8777666788889999999999999987
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=9.9e-23 Score=222.22 Aligned_cols=207 Identities=25% Similarity=0.295 Sum_probs=169.2
Q ss_pred CCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEec
Q 001036 810 DSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNL 889 (1180)
Q Consensus 810 ~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 889 (1180)
...+.+++++++++ .+|..+ +.+++.|++++|.+.+ ++...|.++++|++|++++|.++...+..|.++++|++|++
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~-~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNI-PADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCC-CTTCSEEECCSSCCSC-CCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCC-ccCCCC-CCCCCEEECcCCCCCe-eCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 35788999999998 466544 3678889999888875 44447888889999999999888777777788888999999
Q ss_pred CCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhc
Q 001036 890 AHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFT 969 (1180)
Q Consensus 890 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 969 (1180)
++|++++..+..|..+++|++|++++|++++..|..|++++
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--------------------------------------- 133 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT--------------------------------------- 133 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT---------------------------------------
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc---------------------------------------
Confidence 99988877777788888899999999888887776665533
Q ss_pred cccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCc
Q 001036 970 TKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPR 1049 (1180)
Q Consensus 970 ~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~ 1049 (1180)
+|+.|+|++|++++..+..|+.+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+.
T Consensus 134 --------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 134 --------------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp --------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred --------------CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence 788888999888877666788888889999998888887777888888888999998888877677
Q ss_pred cccCCCCCCEEEcCCCcCcccCC
Q 001036 1050 QLVDLNTLAIFIVAYNNLSGKIP 1072 (1180)
Q Consensus 1050 ~l~~l~~L~~l~ls~N~l~g~ip 1072 (1180)
.+..++.|+.|++++|++.+..+
T Consensus 200 ~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 200 AFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTCTTCCEEECCSSCBCCSSS
T ss_pred HhccccCCCEEEecCCCeeCCCc
Confidence 78888888888888888877665
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=9.5e-25 Score=268.83 Aligned_cols=324 Identities=17% Similarity=0.189 Sum_probs=174.3
Q ss_pred CCCcccceeEecCCCCceEEEEeccccCCcccccccccccCCCCCCEEEccCcccCC-C--chh-------ccc-ccccC
Q 001036 41 TDCCQWEGVECSNTTGRVIGLYLSETYSGEYWYLNASLFTPFQQLESLDLSWNNIAG-C--AEN-------EGL-EGLSR 109 (1180)
Q Consensus 41 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~-~--~~~-------~~~-~~l~~ 109 (1180)
.-|++|+++.. ...+.+++.+.+.. .+...+.++++|++|+++++.... . .+. ..+ .....
T Consensus 32 ~vck~W~~~~~----~~~~~l~~~~~~~~----~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~ 103 (594)
T 2p1m_B 32 LVCKSWYEIER----WCRRKVFIGNCYAV----SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSS 103 (594)
T ss_dssp TSCHHHHHHHH----HHCCEEEESSTTSS----CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHH
T ss_pred HHHHHHHHhhh----hhceEEeecccccc----CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHh
Confidence 45789999832 23456666554222 234567789999999999875211 1 000 000 11246
Q ss_pred CCCCcEEecCCCcCCCCcccccc-CCCCCcEEEccCc-cccCccChhhccCCCCCCeEEccCCCCCchhhhcccCCccee
Q 001036 110 LNNLKMLDLSGNAFNNNVLSSLA-RLSSLRSLYLSDN-RLEGSIDVKELDSLRDLEELDIGGNKIDKFMVSKGLSKLKSL 187 (1180)
Q Consensus 110 l~~L~~L~Ls~~~i~~~lp~~l~-~l~~L~~L~L~~~-~~~~~~~~~~l~~L~~L~~L~L~~~~l~~~~~~~~~~~L~~L 187 (1180)
+++|++|+|++|.+++..+..+. .+++|++|++++| .+........+.++++|++|++++|.+.+.....
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~-------- 175 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW-------- 175 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG--------
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH--------
Confidence 78999999999998887777776 6899999999999 4443222334457999999999998765432210
Q ss_pred cccCCCcccccccccccCCCCccEEeCCCCcCCCccccccccc-ccCCCCccEEEcCCCcCCchhhHHhhccCCCceeec
Q 001036 188 GLSGTGFKGTFDVREFDSFNNLEVLDMSGNEIDNLVVPQGLER-LSRLSKLKKLDLRGNLCNNSILSSVARLSSLTSLHL 266 (1180)
Q Consensus 188 ~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L 266 (1180)
.......+++|++|++++|. ... ....+.. ...+++|++|++++|......+..+..+++|++|++
T Consensus 176 -----------l~~~~~~~~~L~~L~l~~~~-~~~-~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 176 -----------LSHFPDTYTSLVSLNISCLA-SEV-SFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp -----------GGGSCTTCCCCCEEECTTCC-SCC-CHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred -----------HHHHhhcCCcCcEEEecccC-CcC-CHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence 00112245566666666654 111 1111111 233566666666666333334555556666666665
Q ss_pred CCcccc------CccchhhhcccCCCcEE-eCCCCccccchhhccccCCCCccEEEcCCCccCcchhhhhhcCCCCCCce
Q 001036 267 SHNILQ------GSIDAKEFDSLSNLEEL-DINDNEIDNVEVSRGYRGLRKLKSLDLSGVGIRDGNKLLQSMGSFPSLNT 339 (1180)
Q Consensus 267 ~~~~~~------~~~~~~~l~~l~~L~~L-~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~ 339 (1180)
..+... ..+ ...+.++++|+.| .+.... ...++..+..+++|++|++++|.+.+ ..+...+..+++|++
T Consensus 243 ~~~~~~~~~~~~~~l-~~~l~~~~~L~~Ls~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~l~~-~~l~~~~~~~~~L~~ 318 (594)
T 2p1m_B 243 GGYTAEVRPDVYSGL-SVALSGCKELRCLSGFWDAV--PAYLPAVYSVCSRLTTLNLSYATVQS-YDLVKLLCQCPKLQR 318 (594)
T ss_dssp SBCCCCCCHHHHHHH-HHHHHTCTTCCEEECCBTCC--GGGGGGGHHHHTTCCEEECTTCCCCH-HHHHHHHTTCTTCCE
T ss_pred ccccCccchhhHHHH-HHHHhcCCCcccccCCcccc--hhhHHHHHHhhCCCCEEEccCCCCCH-HHHHHHHhcCCCcCE
Confidence 443210 011 1244556666666 332221 12223333455666666666666332 223334456666666
Q ss_pred ecccCCcccccccchhhhcCCCCccEEEcC---------CCCCchhhHhhHhhhCCCCCEEEcCCCccc
Q 001036 340 LHLESNNFTATLTTTQELHNFTNLEYLTLD---------DSSLHISLLQSIGSIFPSLKNLSMSGCEVN 399 (1180)
Q Consensus 340 L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~---------~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 399 (1180)
|++.+| .. ..........+++|++|++. .+.++......+...+++|+.|.+..+.+.
T Consensus 319 L~l~~~-~~-~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~ 385 (594)
T 2p1m_B 319 LWVLDY-IE-DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT 385 (594)
T ss_dssp EEEEGG-GH-HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCC
T ss_pred EeCcCc-cC-HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcC
Confidence 666665 21 11111122346666666662 233444444444444666666655544443
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.1e-22 Score=223.53 Aligned_cols=205 Identities=26% Similarity=0.315 Sum_probs=146.5
Q ss_pred ccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCC
Q 001036 806 FCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLS 885 (1180)
Q Consensus 806 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 885 (1180)
+.++++++.+++++|.++ .+|..+ +..++.|++++|.+.+..+. .|.++++|+.|++++|.+++..+. +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~-~~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL-PKDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC-CTTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCC-CCCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 556788888999888887 455443 35677777777777654444 677777777777777777754332 6677777
Q ss_pred EEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhh
Q 001036 886 HLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEI 965 (1180)
Q Consensus 886 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 965 (1180)
+|++++|+++ .+|..+..+++|++|++++|++++..|..|.+++
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~----------------------------------- 124 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG----------------------------------- 124 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-----------------------------------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCC-----------------------------------
Confidence 7777777776 5666777777777777777777776666665433
Q ss_pred hhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcc
Q 001036 966 FEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 1045 (1180)
Q Consensus 966 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g 1045 (1180)
.|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|+
T Consensus 125 ------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~- 185 (290)
T 1p9a_G 125 ------------------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY- 185 (290)
T ss_dssp ------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred ------------------CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-
Confidence 6777777777777666666777777777777777777655566677777777777777777
Q ss_pred cCCccccCCCCCCEEEcCCCcCccc
Q 001036 1046 KIPRQLVDLNTLAIFIVAYNNLSGK 1070 (1180)
Q Consensus 1046 ~ip~~l~~l~~L~~l~ls~N~l~g~ 1070 (1180)
.+|..+.....|+.+++++|++.+.
T Consensus 186 ~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 186 TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred ccChhhcccccCCeEEeCCCCccCc
Confidence 6677777777777777777776654
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.3e-22 Score=219.23 Aligned_cols=205 Identities=24% Similarity=0.247 Sum_probs=118.5
Q ss_pred ccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECc
Q 001036 835 IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 914 (1180)
Q Consensus 835 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 914 (1180)
.+.++++++.++ .+|. .+. ++++.|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~-~ip~-~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPS-NIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCS-SCCS-CCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCC-ccCC-CCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 455666666655 2444 222 456666666666665555556666666666666666664444455566666666666
Q ss_pred CCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCc
Q 001036 915 DNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK 994 (1180)
Q Consensus 915 ~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~ 994 (1180)
+|++++..+..|.+++ +|+.|+|++|+
T Consensus 94 ~n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~l~~n~ 120 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLV-----------------------------------------------------NLAELRLDRNQ 120 (270)
T ss_dssp SSCCCCCCTTTTTTCS-----------------------------------------------------SCCEEECCSSC
T ss_pred CCcCCcCCHhHccccc-----------------------------------------------------CCCEEECCCCc
Confidence 6666655444443322 45666666666
Q ss_pred ccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCc
Q 001036 995 LVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEW 1074 (1180)
Q Consensus 995 l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~ 1074 (1180)
+++..|..|+++++|++|+|++|++++..+..|+.+++|+.|+|++|++++..|..|..+++|++|++++|++++..+..
T Consensus 121 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (270)
T 2o6q_A 121 LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200 (270)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence 66555555666666666666666666555555666666666666666666555555666666666666666666544444
Q ss_pred ccccccCCccccCCCCCCCCCC
Q 001036 1075 TAQFATFNKSSYDGNPFLCGLP 1096 (1180)
Q Consensus 1075 ~~~~~~~~~~~~~~N~~lc~~~ 1096 (1180)
+..+..+....+.+||+.|+|+
T Consensus 201 ~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTCTTCCEEECCSSCBCCSSS
T ss_pred hccccCCCEEEecCCCeeCCCc
Confidence 4445555555666666666554
No 77
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=4.5e-26 Score=280.69 Aligned_cols=207 Identities=18% Similarity=0.146 Sum_probs=121.1
Q ss_pred hhcCCcccEEEccCCcccCCCCCCCC-CCCCccEEEccCC-cccccCChhhhhcCCCCcEEEccCCcCCccCCcccc---
Q 001036 612 LENNTKLEFLYLVNDSLAGPFRLPIH-SHKRLRFLDVSNN-NFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFG--- 686 (1180)
Q Consensus 612 ~~~~~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n-~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~--- 686 (1180)
...+++|+.|++++|.+++..+..+. .+++|++|++++| .++......+...+++|++|++++|.+++..+..+.
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 34567777777777766654433333 4667777777777 443222223333477888888888877654443333
Q ss_pred -CcccCcEEEccCcc--cccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCc-------ccccCCC
Q 001036 687 -NVIFLQFLDLSNNK--LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH-------FVGEIPQ 756 (1180)
Q Consensus 687 -~l~~L~~L~l~~n~--l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~p~ 756 (1180)
.+++|+.|++++|. +.......+...+++|++|++++|...+.++..+..+++|++|++..+. +.+ ++.
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~ 259 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSV 259 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHH
Confidence 55678888888776 2211112223356788888888773222366667777778888755442 332 233
Q ss_pred cCCCCCCCcEE-ECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCC-ccccCCCCCCEEEccCC
Q 001036 757 SLSKCSSLKGL-YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIP-VEFCRLDSLQILDISDN 820 (1180)
Q Consensus 757 ~~~~l~~L~~L-~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n 820 (1180)
.+.++++|+.| .+.+... +.+|..+..+++|++|++++|.+++... ..+..+++|+.|++++|
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 56677777777 3333222 2344445566777777777777543221 22446677777777766
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2e-23 Score=227.84 Aligned_cols=165 Identities=26% Similarity=0.276 Sum_probs=120.9
Q ss_pred ccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCccccc
Q 001036 854 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE 933 (1180)
Q Consensus 854 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 933 (1180)
+.++++|++|++++|.+++..|..|+++++|++|++++|++++..+..+..+++|++|++++|++++..|..|+.++
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--- 157 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT--- 157 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc---
Confidence 45556666666666666666666666666777777777777666666667777777777777777766655554433
Q ss_pred ccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEe
Q 001036 934 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLN 1013 (1180)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ 1013 (1180)
.|+.|++++|++++..|..++++++|++|+
T Consensus 158 --------------------------------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 158 --------------------------------------------------NLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp --------------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred --------------------------------------------------cCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence 677777888888777777778888888888
Q ss_pred CccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCccccc
Q 001036 1014 LSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQF 1078 (1180)
Q Consensus 1014 Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~ 1078 (1180)
+++|++++..|..|+.+++|+.|++++|+++|..| .|+.++++.|+++|.+|.+.+.+
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCCcccCccccc
Confidence 88888888888788888888888888888886544 57888888899999888865443
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=6.1e-23 Score=224.03 Aligned_cols=165 Identities=25% Similarity=0.250 Sum_probs=89.3
Q ss_pred ccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCccccc
Q 001036 854 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE 933 (1180)
Q Consensus 854 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 933 (1180)
+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..|++++
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--- 133 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT--- 133 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT---
T ss_pred cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC---
Confidence 34445555555555555532 2455555555555555555555555555555555555555555554444443322
Q ss_pred ccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEe
Q 001036 934 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLN 1013 (1180)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ 1013 (1180)
.|+.|++++|++++..|..++.+++|+.|+
T Consensus 134 --------------------------------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 134 --------------------------------------------------NLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163 (272)
T ss_dssp --------------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred --------------------------------------------------CCCEEECCCCccCccCHHHhccCccCCEEE
Confidence 455555555555554444455555555555
Q ss_pred CccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCC
Q 001036 1014 LSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus 1014 Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
+++|++++..|..|+.+++|+.|++++|++++..|..+..++.|+.|++++|++.|.+|.
T Consensus 164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 555555555555555555555555555555555555555555555555555555555553
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=6.1e-22 Score=217.50 Aligned_cols=205 Identities=27% Similarity=0.239 Sum_probs=177.7
Q ss_pred CCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccE
Q 001036 758 LSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQ 837 (1180)
Q Consensus 758 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~ 837 (1180)
++++++++++++++|.++ .+|..+. +.++.|++++|.+++..+..|..+++|++|++++|.+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------- 69 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK------------- 69 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-------------
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-------------
Confidence 567888999999999987 5666554 688999999999988888888899999999999988863
Q ss_pred EEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCc
Q 001036 838 VHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 917 (1180)
Q Consensus 838 L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 917 (1180)
++. ...+++|+.|++++|+++ .+|..+.++++|++|++++|++++..|..|..+++|++|+|++|+
T Consensus 70 -----------~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 70 -----------LQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp -----------EEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred -----------ccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC
Confidence 222 256789999999999998 678889999999999999999998888999999999999999999
Q ss_pred CcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccC
Q 001036 918 LHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG 997 (1180)
Q Consensus 918 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g 997 (1180)
+++..+..|..++ +|+.|+|++|+|++
T Consensus 136 l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 136 LKTLPPGLLTPTP-----------------------------------------------------KLEKLSLANNNLTE 162 (290)
T ss_dssp CCCCCTTTTTTCT-----------------------------------------------------TCCEEECTTSCCSC
T ss_pred CCccChhhccccc-----------------------------------------------------CCCEEECCCCcCCc
Confidence 9988777776543 79999999999997
Q ss_pred CCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCccc
Q 001036 998 HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 1046 (1180)
Q Consensus 998 ~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ 1046 (1180)
..+..|..+++|+.|+|++|+|+ .+|..+..+.+|+.|+|++|.+.+.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 77777899999999999999999 7888888889999999999998754
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.4e-21 Score=210.42 Aligned_cols=181 Identities=26% Similarity=0.266 Sum_probs=150.5
Q ss_pred cEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcC
Q 001036 836 KQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 915 (1180)
Q Consensus 836 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 915 (1180)
+.++++++.+. .+|. .+. ++++.|++++|.+++..|..|.++++|++|+|++|++++..|..|..+++|++|+|++
T Consensus 17 ~~l~~~~~~l~-~~p~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 17 KEVDCQGKSLD-SVPS-GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp TEEECTTCCCS-SCCS-CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred eEEecCCCCcc-ccCC-CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 34444444443 3444 222 5788899999999888888889999999999999999988888889999999999999
Q ss_pred CcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcc
Q 001036 916 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 995 (1180)
Q Consensus 916 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 995 (1180)
|++++..+..|..++ +|+.|+|++|+|
T Consensus 93 n~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N~l 119 (251)
T 3m19_A 93 NQLASLPLGVFDHLT-----------------------------------------------------QLDKLYLGGNQL 119 (251)
T ss_dssp SCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSSCC
T ss_pred CcccccChhHhcccC-----------------------------------------------------CCCEEEcCCCcC
Confidence 999887777665533 788999999999
Q ss_pred cCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCC
Q 001036 996 VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus 996 ~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
++..+..|..+++|++|+|++|+|++..|..|+.+++|+.|||++|++++..|..+..++.|+.|++++|++++..++
T Consensus 120 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 120 KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred CCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence 977777789999999999999999988888899999999999999999988888899999999999999999987443
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=2.8e-23 Score=237.10 Aligned_cols=108 Identities=18% Similarity=0.085 Sum_probs=58.4
Q ss_pred EEEccCcccccccChhhhhcCCCCCEEEccCCccccccc----ccccCCc-cCceeeccCCcccccCCCcCCCC-----C
Q 001036 693 FLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIF----SRIFSLR-NLRWLLLEGNHFVGEIPQSLSKC-----S 762 (1180)
Q Consensus 693 ~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~ 762 (1180)
.+++++|.++|.+|... ....+|++|++++|.+++..+ ..+..++ +|++|+|++|.+++..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFT-SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHH-hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 35666777766555543 234447777777776665555 4555555 56666666666655544444432 5
Q ss_pred CCcEEECcCCcCCCCCcccccC----C-CCCCeEEccCCcCCCC
Q 001036 763 SLKGLYLNNNNLSGKIPRWLGN----L-KGLQHIVMPKNHLEGP 801 (1180)
Q Consensus 763 ~L~~L~l~~n~l~~~~p~~~~~----l-~~L~~L~l~~n~l~~~ 801 (1180)
+|++|++++|.+++..+..+.. + ++|++|++++|++++.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 5555555555555444432222 2 4455555555554433
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.9e-22 Score=224.99 Aligned_cols=209 Identities=20% Similarity=0.226 Sum_probs=128.6
Q ss_pred CCCCeEEccCCcCCCCCCccc--cCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEE
Q 001036 786 KGLQHIVMPKNHLEGPIPVEF--CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTL 863 (1180)
Q Consensus 786 ~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 863 (1180)
++|++|++++|.+.+..|..+ ..+++|++|++++|++++..|. ++...+..+++|++|
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~--------------------~~~~~~~~~~~L~~L 150 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW--------------------LAELQQWLKPGLKVL 150 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS--------------------HHHHHTTBCSCCCEE
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh--------------------hHHHHhhhccCCCEE
Confidence 446666666666666666655 5666666666666666543331 111133456667777
Q ss_pred ECcCccCccccchhhhcCCCCCEEecCCCccccC--C--CccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCC
Q 001036 864 DLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGE--V--PIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNS 939 (1180)
Q Consensus 864 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~ 939 (1180)
++++|.+++..|..|+++++|++|+|++|++.+. + +..+..+++|++|+|++|+++...+....
T Consensus 151 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~------------ 218 (310)
T 4glp_A 151 SIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAA------------ 218 (310)
T ss_dssp EEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHH------------
T ss_pred EeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHH------------
Confidence 7777777666666666777777777777766542 1 22235667777777777766522110000
Q ss_pred CCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCC---CCCCEEeCcc
Q 001036 940 SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNL---TRIQTLNLSH 1016 (1180)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l---~~L~~L~Ls~ 1016 (1180)
....++.|+.|||++|++++.+|..++.+ ++|++|+|++
T Consensus 219 --------------------------------------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~ 260 (310)
T 4glp_A 219 --------------------------------------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF 260 (310)
T ss_dssp --------------------------------------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred --------------------------------------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence 00113467777777777777767666665 4777777777
Q ss_pred ccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcc
Q 001036 1017 NNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG 1069 (1180)
Q Consensus 1017 N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g 1069 (1180)
|+|+ .+|..+. ++|+.|||++|+|++. |. +..++.|+.|++++|+++.
T Consensus 261 N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 261 AGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 7777 5666664 6777888888887753 33 5667777788888887763
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=2.3e-23 Score=240.63 Aligned_cols=167 Identities=19% Similarity=0.222 Sum_probs=109.8
Q ss_pred cccCCCCCcEEECcCccCccccchhhh----cC---------CCCCEEecCCCccc-cCCC---ccccCCCCCCEEECcC
Q 001036 853 TFFNCSSLVTLDLSYNYLNGSIPDWID----GL---------SQLSHLNLAHNNLE-GEVP---IQLCRLNQLQLLDLSD 915 (1180)
Q Consensus 853 ~~~~~~~L~~L~L~~n~l~~~~p~~~~----~l---------~~L~~L~L~~N~l~-~~~p---~~~~~l~~L~~L~Ls~ 915 (1180)
.+..+++|+.|+|++|.+++..+..+. .+ ++|++|++++|+++ +.+| ..+..+++|++|+|++
T Consensus 117 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 196 (386)
T 2ca6_A 117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ 196 (386)
T ss_dssp HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcC
Confidence 445556666666666666543333332 22 66667777766665 3333 3455666777777777
Q ss_pred CcCc--c---cCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEc
Q 001036 916 NNLH--G---LIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDL 990 (1180)
Q Consensus 916 N~l~--~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL 990 (1180)
|+++ | ..|..+.. ++.|+.|+|
T Consensus 197 n~l~~~g~~~l~~~~l~~-----------------------------------------------------~~~L~~L~L 223 (386)
T 2ca6_A 197 NGIRPEGIEHLLLEGLAY-----------------------------------------------------CQELKVLDL 223 (386)
T ss_dssp SCCCHHHHHHHHHTTGGG-----------------------------------------------------CTTCCEEEC
T ss_pred CCCCHhHHHHHHHHHhhc-----------------------------------------------------CCCccEEEC
Confidence 7665 2 11112211 336777777
Q ss_pred cCCccc----CCCCccccCCCCCCEEeCcccccccc----ccccc--cCCCCCCEEECcCCcCcc----cCCccc-cCCC
Q 001036 991 SCNKLV----GHIPPQIGNLTRIQTLNLSHNNLTGT----IPLTF--SNLRHIESLDLSYNKLSG----KIPRQL-VDLN 1055 (1180)
Q Consensus 991 s~N~l~----g~~p~~~~~l~~L~~L~Ls~N~l~g~----~p~~~--~~l~~L~~L~Ls~N~l~g----~ip~~l-~~l~ 1055 (1180)
++|.++ +.+|..+..+++|+.|+|++|++++. +|..+ +.+++|+.|+|++|++++ .+|..+ .+++
T Consensus 224 s~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~ 303 (386)
T 2ca6_A 224 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 303 (386)
T ss_dssp CSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred cCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCC
Confidence 777775 56677778888888888888888876 56666 338888888888888887 477777 5678
Q ss_pred CCCEEEcCCCcCcccCC
Q 001036 1056 TLAIFIVAYNNLSGKIP 1072 (1180)
Q Consensus 1056 ~L~~l~ls~N~l~g~ip 1072 (1180)
.|++|++++|++++..|
T Consensus 304 ~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 304 DLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TCCEEECTTSBSCTTSH
T ss_pred CceEEEccCCcCCcchh
Confidence 88888888888887664
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.5e-21 Score=206.98 Aligned_cols=196 Identities=21% Similarity=0.289 Sum_probs=115.9
Q ss_pred CCCeEEccCCcCCCCCCccccCCCCCCEEEccCCc-ccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEEC
Q 001036 787 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNN-ISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDL 865 (1180)
Q Consensus 787 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L 865 (1180)
+|++|++++|++++..+..|.++++|++|++++|+ ++ .++...|.++++|++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~------------------------~i~~~~f~~l~~L~~L~l 87 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ------------------------QLESHSFYNLSKVTHIEI 87 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC------------------------EECTTTEESCTTCCEEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc------------------------eeCHhHcCCCcCCcEEEC
Confidence 45555555555554444455555555555555554 43 222224556666666666
Q ss_pred cC-ccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCC---EEECcCC-cCcccCCCCccCcccccccCCCCC
Q 001036 866 SY-NYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQ---LLDLSDN-NLHGLIPSCFDNTTLHESYNNNSS 940 (1180)
Q Consensus 866 ~~-n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~~~~~~~~~~~~~ 940 (1180)
++ |++++..+..|.++++|++|++++|++++ +|. +..+++|+ +|++++| ++++..+..|.+++
T Consensus 88 ~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~---------- 155 (239)
T 2xwt_C 88 RNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC---------- 155 (239)
T ss_dssp EEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB----------
T ss_pred CCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh----------
Confidence 66 66665555566666666666666666664 444 56666666 6666666 66655555554432
Q ss_pred CCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccc-eEEccCCcccCCCCccccCCCCCCEEeCcccc-
Q 001036 941 PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLA-GLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNN- 1018 (1180)
Q Consensus 941 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~- 1018 (1180)
.|+ .|++++|+++ .+|......++|+.|+|++|+
T Consensus 156 -------------------------------------------~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~ 191 (239)
T 2xwt_C 156 -------------------------------------------NETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKY 191 (239)
T ss_dssp -------------------------------------------SSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTT
T ss_pred -------------------------------------------cceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCC
Confidence 566 6667777666 344333223667777777773
Q ss_pred ccccccccccCC-CCCCEEECcCCcCcccCCccccCCCCCCEEEcCCC
Q 001036 1019 LTGTIPLTFSNL-RHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 1065 (1180)
Q Consensus 1019 l~g~~p~~~~~l-~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N 1065 (1180)
+++..|..|+++ ++|+.||+++|++++ +|.. .+..|+.|+++++
T Consensus 192 l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 192 LTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred cccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 776656667777 777777777777763 3433 4556666666654
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=2.1e-21 Score=216.51 Aligned_cols=208 Identities=22% Similarity=0.226 Sum_probs=114.0
Q ss_pred ccCceeeccCCcccccCCCcC--CCCCCCcEEECcCCcCCCCCc----ccccCCCCCCeEEccCCcCCCCCCccccCCCC
Q 001036 738 RNLRWLLLEGNHFVGEIPQSL--SKCSSLKGLYLNNNNLSGKIP----RWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDS 811 (1180)
Q Consensus 738 ~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~l~~n~l~~~~p----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 811 (1180)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..| ..+..+++|++|++++|++.+..|..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 445566666666555555555 556666666666666654433 23345666666666666666555666666666
Q ss_pred CCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccch----hhhcCCCCCEE
Q 001036 812 LQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPD----WIDGLSQLSHL 887 (1180)
Q Consensus 812 L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L 887 (1180)
|++|++++|++.+.. +..+...+..+++|++|++++|+++. +|. .++++++|++|
T Consensus 171 L~~L~Ls~N~l~~~~--------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L 229 (310)
T 4glp_A 171 LTSLDLSDNPGLGER--------------------GLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSL 229 (310)
T ss_dssp CCEEECCSCTTCHHH--------------------HHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSE
T ss_pred CCEEECCCCCCccch--------------------hhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEE
Confidence 666666666654210 00001022445556666666665542 121 13444455555
Q ss_pred ecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhh
Q 001036 888 NLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFE 967 (1180)
Q Consensus 888 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 967 (1180)
+|++|+++ +..|..+..+.
T Consensus 230 ~Ls~N~l~------------------------~~~p~~~~~~~------------------------------------- 248 (310)
T 4glp_A 230 DLSHNSLR------------------------ATVNPSAPRCM------------------------------------- 248 (310)
T ss_dssp ECTTSCCC------------------------CCCCSCCSSCC-------------------------------------
T ss_pred ECCCCCCC------------------------ccchhhHHhcc-------------------------------------
Confidence 55555444 44444333221
Q ss_pred hccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcc
Q 001036 968 FTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSG 1045 (1180)
Q Consensus 968 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g 1045 (1180)
.++.|+.|+|++|+|+ .+|..+. ++|++|||++|+|++. |. +..+++|+.|+|++|+++.
T Consensus 249 -------------~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 249 -------------WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -------------CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred -------------CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 0124666666666666 4555553 5777777777777753 33 5666777777777777763
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=7.7e-23 Score=233.52 Aligned_cols=177 Identities=21% Similarity=0.182 Sum_probs=102.7
Q ss_pred eeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCc----ccccCCC-CCCeEEccCCcCCCCCCccccCC-----CC
Q 001036 742 WLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIP----RWLGNLK-GLQHIVMPKNHLEGPIPVEFCRL-----DS 811 (1180)
Q Consensus 742 ~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~ 811 (1180)
+++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45778888888887777767778888888888876666 6677777 78888888888887777666654 78
Q ss_pred CCEEEccCCcccccCCCCcC-----C-CcccEEEcCCcccccccCccc----ccC-CCCCcEEECcCccCcccc----ch
Q 001036 812 LQILDISDNNISGSLPSCFY-----P-LSIKQVHLSKNMLHGQLKEGT----FFN-CSSLVTLDLSYNYLNGSI----PD 876 (1180)
Q Consensus 812 L~~L~l~~n~l~~~~p~~~~-----~-~~L~~L~l~~n~~~~~~~~~~----~~~-~~~L~~L~L~~n~l~~~~----p~ 876 (1180)
|++|++++|++++..+..+. . .+|++|++++|.+++..+. . +.. .++|++|+|++|.+++.. +.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS-EFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH-HHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH-HHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 88888888888765443221 1 3455555555554432221 1 112 234555555555544322 22
Q ss_pred hhhcCC-CCCEEecCCCccccCCCcccc----CC-CCCCEEECcCCcCc
Q 001036 877 WIDGLS-QLSHLNLAHNNLEGEVPIQLC----RL-NQLQLLDLSDNNLH 919 (1180)
Q Consensus 877 ~~~~l~-~L~~L~L~~N~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~ 919 (1180)
.+..++ +|++|+|++|++++..+..++ .+ ++|++|||++|+++
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 223333 455555555555444333222 22 34555555555444
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=1.7e-20 Score=202.06 Aligned_cols=160 Identities=29% Similarity=0.326 Sum_probs=140.1
Q ss_pred cccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEEC
Q 001036 834 SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDL 913 (1180)
Q Consensus 834 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 913 (1180)
.++.|++++|.+.+..+. .|.++++|++|+|++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|+|
T Consensus 36 ~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDA-TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEccCCCcCccCHh-HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 445555555555443333 7889999999999999999999999999999999999999999888889999999999999
Q ss_pred cCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCC
Q 001036 914 SDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCN 993 (1180)
Q Consensus 914 s~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N 993 (1180)
++|++++..+..|..++ .|+.|+|++|
T Consensus 115 ~~N~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~Ls~N 141 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLT-----------------------------------------------------KLKELRLNTN 141 (251)
T ss_dssp CSSCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSS
T ss_pred CCCcCCCcChhHhccCC-----------------------------------------------------cccEEECcCC
Confidence 99999988777666543 7999999999
Q ss_pred cccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccC
Q 001036 994 KLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKI 1047 (1180)
Q Consensus 994 ~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~i 1047 (1180)
+|++..|..|+.+++|++|+|++|++++..|..|..+++|+.|+|++|++++..
T Consensus 142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence 999888878999999999999999999988889999999999999999999763
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=7e-23 Score=236.56 Aligned_cols=193 Identities=18% Similarity=0.222 Sum_probs=123.7
Q ss_pred cCCCCCCeEEccCCcCCC----CCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCC-
Q 001036 783 GNLKGLQHIVMPKNHLEG----PIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNC- 857 (1180)
Q Consensus 783 ~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~- 857 (1180)
..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..+.. ++. .+..+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~-------------------l~~-~l~~l~ 150 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK-------------------IAR-ALQELA 150 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHH-------------------HHH-HHHHHH
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHH-------------------HHH-HHHHHh
Confidence 455566666666665554 24445556666666666666664322111 111 12222
Q ss_pred --------CCCcEEECcCccCc-cccc---hhhhcCCCCCEEecCCCccc--c---CCCccccCCCCCCEEECcCCcCc-
Q 001036 858 --------SSLVTLDLSYNYLN-GSIP---DWIDGLSQLSHLNLAHNNLE--G---EVPIQLCRLNQLQLLDLSDNNLH- 919 (1180)
Q Consensus 858 --------~~L~~L~L~~n~l~-~~~p---~~~~~l~~L~~L~L~~N~l~--~---~~p~~~~~l~~L~~L~Ls~N~l~- 919 (1180)
++|+.|++++|+++ +.+| ..+..+++|++|++++|+++ | ..|..+..+++|++|+|++|.++
T Consensus 151 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~ 230 (386)
T 2ca6_A 151 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230 (386)
T ss_dssp HHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH
T ss_pred hhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc
Confidence 56777777777765 3344 35566777777777777766 2 33446667777777777777765
Q ss_pred ---ccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCccc
Q 001036 920 ---GLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLV 996 (1180)
Q Consensus 920 ---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 996 (1180)
+.+|..+.. ++.|+.|+|++|+++
T Consensus 231 ~g~~~l~~~l~~-----------------------------------------------------~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 231 LGSSALAIALKS-----------------------------------------------------WPNLRELGLNDCLLS 257 (386)
T ss_dssp HHHHHHHHHGGG-----------------------------------------------------CTTCCEEECTTCCCC
T ss_pred HHHHHHHHHHcc-----------------------------------------------------CCCcCEEECCCCCCc
Confidence 333333322 236777777777777
Q ss_pred CC----CCccc--cCCCCCCEEeCccccccc----cccccc-cCCCCCCEEECcCCcCcccCC
Q 001036 997 GH----IPPQI--GNLTRIQTLNLSHNNLTG----TIPLTF-SNLRHIESLDLSYNKLSGKIP 1048 (1180)
Q Consensus 997 g~----~p~~~--~~l~~L~~L~Ls~N~l~g----~~p~~~-~~l~~L~~L~Ls~N~l~g~ip 1048 (1180)
+. +|..+ +.+++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++..|
T Consensus 258 ~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred hhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 55 55666 448899999999999998 588877 678999999999999998775
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=7.3e-21 Score=211.27 Aligned_cols=81 Identities=23% Similarity=0.341 Sum_probs=39.3
Q ss_pred CCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEE
Q 001036 736 SLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQIL 815 (1180)
Q Consensus 736 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 815 (1180)
.+++|++|++++|.+.. +| .+..+++|++|++++|.+.+.. . +..+++|++|++++|++++. ..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 45556666666665553 22 3455555555555555554322 2 44555555555555554432 134444444444
Q ss_pred EccCCcc
Q 001036 816 DISDNNI 822 (1180)
Q Consensus 816 ~l~~n~l 822 (1180)
++++|++
T Consensus 113 ~l~~n~l 119 (308)
T 1h6u_A 113 DLTSTQI 119 (308)
T ss_dssp ECTTSCC
T ss_pred ECCCCCC
Confidence 4444444
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=5.2e-22 Score=224.97 Aligned_cols=87 Identities=18% Similarity=0.150 Sum_probs=43.2
Q ss_pred ccceEEccCCc-ccCCCCccccCCCCCCEEeCcccc-ccccccccccCCCCCCEEECcCCcCcccCCccccCC-CCCCEE
Q 001036 984 LLAGLDLSCNK-LVGHIPPQIGNLTRIQTLNLSHNN-LTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL-NTLAIF 1060 (1180)
Q Consensus 984 ~L~~LdLs~N~-l~g~~p~~~~~l~~L~~L~Ls~N~-l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l-~~L~~l 1060 (1180)
+|+.|++++|. +++..+..++++++|+.|++++|. ++......++++++|+.|++++| ++. ..+..+ ..+..|
T Consensus 223 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L 298 (336)
T 2ast_B 223 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHL 298 (336)
T ss_dssp TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTS
T ss_pred CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcce
Confidence 34444444444 343444455555566666666663 21111124555666666666666 221 122222 225555
Q ss_pred EcCCCcCcccCCCc
Q 001036 1061 IVAYNNLSGKIPEW 1074 (1180)
Q Consensus 1061 ~ls~N~l~g~ip~~ 1074 (1180)
++++|++++..|.+
T Consensus 299 ~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 299 QINCSHFTTIARPT 312 (336)
T ss_dssp EESCCCSCCTTCSS
T ss_pred EEecccCccccCCc
Confidence 56777777766653
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=9.5e-21 Score=202.48 Aligned_cols=199 Identities=17% Similarity=0.220 Sum_probs=158.3
Q ss_pred cccEEEcCCcccccccCcccccCCCCCcEEECcCcc-CccccchhhhcCCCCCEEecCC-CccccCCCccccCCCCCCEE
Q 001036 834 SIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY-LNGSIPDWIDGLSQLSHLNLAH-NNLEGEVPIQLCRLNQLQLL 911 (1180)
Q Consensus 834 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L 911 (1180)
+++.|++++|.+++ +|...|.++++|+.|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|
T Consensus 32 ~l~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSE-ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceE-ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 44444444444443 444478999999999999997 8877778999999999999999 99998888899999999999
Q ss_pred ECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEcc
Q 001036 912 DLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLS 991 (1180)
Q Consensus 912 ~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs 991 (1180)
++++|++++ +|. |..++ .+..|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~--------------------------------------------------~L~~L~~L~l~ 138 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVY--------------------------------------------------STDIFFILEIT 138 (239)
T ss_dssp EEEEECCCS-CCC-CTTCC--------------------------------------------------BCCSEEEEEEE
T ss_pred eCCCCCCcc-ccc-ccccc--------------------------------------------------ccccccEEECC
Confidence 999999997 554 54433 01123499999
Q ss_pred CC-cccCCCCccccCCCCCC-EEeCccccccccccccccCCCCCCEEECcCCc-CcccCCccccCC-CCCCEEEcCCCcC
Q 001036 992 CN-KLVGHIPPQIGNLTRIQ-TLNLSHNNLTGTIPLTFSNLRHIESLDLSYNK-LSGKIPRQLVDL-NTLAIFIVAYNNL 1067 (1180)
Q Consensus 992 ~N-~l~g~~p~~~~~l~~L~-~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~-l~g~ip~~l~~l-~~L~~l~ls~N~l 1067 (1180)
+| ++++..+..|.++++|+ .|++++|+++...+..|.. ++|+.|++++|+ +++..|..|..+ ++|+.|++++|++
T Consensus 139 ~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l 217 (239)
T 2xwt_C 139 DNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217 (239)
T ss_dssp SCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC
T ss_pred CCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc
Confidence 99 99987788899999999 9999999999444445555 899999999995 997778889999 9999999999999
Q ss_pred cccCCCcccccccCCccccCCC
Q 001036 1068 SGKIPEWTAQFATFNKSSYDGN 1089 (1180)
Q Consensus 1068 ~g~ip~~~~~~~~~~~~~~~~N 1089 (1180)
++ +|.. .+..+....+.++
T Consensus 218 ~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 218 TA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CC-CCCT--TCTTCSEEECTTC
T ss_pred cc-CChh--HhccCceeeccCc
Confidence 95 4442 4555555555544
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=5.1e-22 Score=225.05 Aligned_cols=254 Identities=20% Similarity=0.225 Sum_probs=194.0
Q ss_pred CCCCEEEccCCcccccccccccCC--ccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCC-CcccccCCCCCCe
Q 001036 714 VNLEFLSLSNNSLKGHIFSRIFSL--RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGK-IPRWLGNLKGLQH 790 (1180)
Q Consensus 714 ~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~ 790 (1180)
..++.+++++|.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 34788999998876 4556666 7899999999998877665 55788999999999988765 7777888888999
Q ss_pred EEccCCcCCCCCCccccCCCCCCEEEccCC-cccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCc-
Q 001036 791 IVMPKNHLEGPIPVEFCRLDSLQILDISDN-NISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN- 868 (1180)
Q Consensus 791 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n- 868 (1180)
|++++|.+++..+..+..+++|++|++++| .+++. .++. .+.++++|+.|++++|
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~----------------------~l~~-~~~~~~~L~~L~l~~~~ 179 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF----------------------ALQT-LLSSCSRLDELNLSWCF 179 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH----------------------HHHH-HHHHCTTCCEEECCCCT
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH----------------------HHHH-HHhcCCCCCEEcCCCCC
Confidence 999888888777778888888888888888 45421 1232 5677889999999999
Q ss_pred cCccc-cchhhhcCC-CCCEEecCCC--ccc-cCCCccccCCCCCCEEECcCCc-CcccCCCCccCcccccccCCCCCCC
Q 001036 869 YLNGS-IPDWIDGLS-QLSHLNLAHN--NLE-GEVPIQLCRLNQLQLLDLSDNN-LHGLIPSCFDNTTLHESYNNNSSPD 942 (1180)
Q Consensus 869 ~l~~~-~p~~~~~l~-~L~~L~L~~N--~l~-~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~~~~~~~~~ 942 (1180)
.+++. ++..+..++ +|++|++++| .++ +.+|..+..+++|++|++++|. +++..+..+..
T Consensus 180 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-------------- 245 (336)
T 2ast_B 180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-------------- 245 (336)
T ss_dssp TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG--------------
T ss_pred CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC--------------
Confidence 88864 677888899 9999999999 455 4567778888999999999998 66555554443
Q ss_pred CCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCc---cccCCCCCCEEeCccccc
Q 001036 943 KPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPP---QIGNLTRIQTLNLSHNNL 1019 (1180)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~---~~~~l~~L~~L~Ls~N~l 1019 (1180)
++.|+.|++++|. +..|. .++++++|+.|++++| +
T Consensus 246 ---------------------------------------l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 246 ---------------------------------------LNYLQHLSLSRCY--DIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp ---------------------------------------CTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred ---------------------------------------CCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 2378899999996 23333 5788899999999988 3
Q ss_pred cccccccccCC-CCCCEEECcCCcCcccCCccccC
Q 001036 1020 TGTIPLTFSNL-RHIESLDLSYNKLSGKIPRQLVD 1053 (1180)
Q Consensus 1020 ~g~~p~~~~~l-~~L~~L~Ls~N~l~g~ip~~l~~ 1053 (1180)
+ .+.+..+ .+++.|++++|++++..|..++.
T Consensus 284 ~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 284 P---DGTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp C---TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred C---HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence 3 2234444 34777778999999988887765
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=4.8e-20 Score=204.69 Aligned_cols=209 Identities=21% Similarity=0.335 Sum_probs=129.6
Q ss_pred ceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCC
Q 001036 741 RWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN 820 (1180)
Q Consensus 741 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 820 (1180)
..+.+..+.++... ....+++|+.|++++|.+.. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|
T Consensus 22 ~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN 95 (308)
T ss_dssp HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred HHHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC
Confidence 33444555544332 23456778888888887763 44 46777777777777777765433 667777777777777
Q ss_pred cccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCc
Q 001036 821 NISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPI 900 (1180)
Q Consensus 821 ~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 900 (1180)
++++ ++ .+..+++|+.|++++|++++. |. +..+++|++|++++|++++..+
T Consensus 96 ~l~~------------------------~~--~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~- 146 (308)
T 1h6u_A 96 PLKN------------------------VS--AIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP- 146 (308)
T ss_dssp CCSC------------------------CG--GGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred cCCC------------------------ch--hhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc-
Confidence 7652 11 356677777777777777753 32 6777777777777777765433
Q ss_pred cccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccch
Q 001036 901 QLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGR 980 (1180)
Q Consensus 901 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 980 (1180)
+..+++|++|++++|++++..+ +..
T Consensus 147 -l~~l~~L~~L~l~~n~l~~~~~--l~~---------------------------------------------------- 171 (308)
T 1h6u_A 147 -LAGLTNLQYLSIGNAQVSDLTP--LAN---------------------------------------------------- 171 (308)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGG--GTT----------------------------------------------------
T ss_pred -ccCCCCccEEEccCCcCCCChh--hcC----------------------------------------------------
Confidence 6666677777777776664332 222
Q ss_pred hccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCc
Q 001036 981 VLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044 (1180)
Q Consensus 981 ~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 1044 (1180)
++.|+.|++++|++++..| +..+++|+.|+|++|++++..| +..+++|+.|++++|+++
T Consensus 172 -l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 172 -LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp -CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred -CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 2256666666666664332 5666666666666666664443 556666666666666665
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=3.2e-20 Score=220.55 Aligned_cols=115 Identities=26% Similarity=0.381 Sum_probs=57.7
Q ss_pred CCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECc
Q 001036 787 GLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLS 866 (1180)
Q Consensus 787 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~ 866 (1180)
+|+.|++++|.+++ +|..+ .++|++|++++|+++ .+| -...+|+.|++++|.+++ +|. +.+ +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~--l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE--LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC--CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch--hhc--CCCEEECC
Confidence 67777777777775 55544 266777777777776 444 123344444444444443 333 222 44444444
Q ss_pred CccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcc
Q 001036 867 YNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHG 920 (1180)
Q Consensus 867 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 920 (1180)
+|++++ +|. .+++|+.|++++|++++ +|. .+++|++|+|++|++++
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC
Confidence 444443 222 33444444444444443 332 23444444444444443
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.3e-19 Score=188.98 Aligned_cols=161 Identities=25% Similarity=0.260 Sum_probs=137.3
Q ss_pred CCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccC
Q 001036 857 CSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYN 936 (1180)
Q Consensus 857 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~ 936 (1180)
.++|++|++++|++++..+..|+++++|++|++++|++++..+..|..+++|++|++++|++++..+..|.+++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------ 100 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT------ 100 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc------
Confidence 35788999999999887777888999999999999999877777788899999999999999877766665533
Q ss_pred CCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCcc
Q 001036 937 NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSH 1016 (1180)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~ 1016 (1180)
.|+.|+|++|++++..+..|.++++|++|+|++
T Consensus 101 -----------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 101 -----------------------------------------------QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ 133 (208)
T ss_dssp -----------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred -----------------------------------------------CCCEEEcCCCcCcccCHhHhccCCcCCEEECCC
Confidence 789999999999987777789999999999999
Q ss_pred ccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccc
Q 001036 1017 NNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQ 1077 (1180)
Q Consensus 1017 N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~ 1077 (1180)
|++++..+..|..+++|+.|++++|.+++. ++.|++|+++.|+++|.+|.+.+.
T Consensus 134 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 134 NQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred CccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCcc
Confidence 999988777899999999999999988754 457889999999999999985543
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.2e-19 Score=203.59 Aligned_cols=208 Identities=25% Similarity=0.222 Sum_probs=136.3
Q ss_pred cEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCC-CcCCCCCCCcE-EEC
Q 001036 692 QFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIP-QSLSKCSSLKG-LYL 769 (1180)
Q Consensus 692 ~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~l 769 (1180)
++++.++++++ .||..+ .+++++|+|++|+++...+.+|.++++|++|+|++|++.+.+| ..|.+++++.. +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56777777777 777655 2567777888777776666677777777777777777765554 35666766654 455
Q ss_pred cCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCC-cccccCCCCcCCCcccEEEcCCcccccc
Q 001036 770 NNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDN-NISGSLPSCFYPLSIKQVHLSKNMLHGQ 848 (1180)
Q Consensus 770 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~~~L~~L~l~~n~~~~~ 848 (1180)
++|++++..|..|..+++|++|++++|++.+..+..+....++..+++.++ ++. .
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~------------------------~ 143 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH------------------------T 143 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC------------------------E
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc------------------------c
Confidence 566776555666777777777777777776655555555566666666543 332 3
Q ss_pred cCcccccCCC-CCcEEECcCccCccccchhhhcCCCCCEEecCC-CccccCCCccccCCCCCCEEECcCCcCcccCCCCc
Q 001036 849 LKEGTFFNCS-SLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH-NNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 926 (1180)
Q Consensus 849 ~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 926 (1180)
++...|..+. .++.|++++|+|+...+..| ...+|++|++++ |.++...+..|..+++|++|||++|+|+...+..|
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~ 222 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred ccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh
Confidence 4443555553 57778888888875444444 345678888875 55554444567788888888888888876655444
Q ss_pred cC
Q 001036 927 DN 928 (1180)
Q Consensus 927 ~~ 928 (1180)
.+
T Consensus 223 ~~ 224 (350)
T 4ay9_X 223 EN 224 (350)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=3.5e-19 Score=201.98 Aligned_cols=244 Identities=18% Similarity=0.138 Sum_probs=167.8
Q ss_pred cEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCE-EEc
Q 001036 643 RFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEF-LSL 721 (1180)
Q Consensus 643 ~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~-L~L 721 (1180)
++++.++++++ .+|..+ .+++++|++++|+|+.+.+.+|.++++|++|+|++|++.+.+|...|.+++++.+ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 57888888888 788765 3578889999998887666788888888888888888876777776666766654 455
Q ss_pred cCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCC
Q 001036 722 SNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGP 801 (1180)
Q Consensus 722 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 801 (1180)
..|+++...|..|..+++|++|++++|++.+..+..+....++..+++.++ +++...
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~~l 144 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIHTI 144 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCCEE
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccccc
Confidence 556776666666666666666666666666555444444455555555432 223222
Q ss_pred CCccccCC-CCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhc
Q 001036 802 IPVEFCRL-DSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDG 880 (1180)
Q Consensus 802 ~~~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~ 880 (1180)
.+..|..+ ..++.|++++|+++...+..+...+++++++++++..+.+|.++|.++++|+.||+++|+|+...+..|.
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~- 223 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE- 223 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT-
T ss_pred cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc-
Confidence 23334443 2466677777777655555555667777777765555678877899999999999999999966555554
Q ss_pred CCCCCEEecCCCccccCCCccccCCCCCCEEECcCCc
Q 001036 881 LSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNN 917 (1180)
Q Consensus 881 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 917 (1180)
+|+.|.+.++.--..+| .+.++++|+.++++++.
T Consensus 224 --~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 224 --NLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp --TCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred --cchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 55566555544334666 48889999999998653
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=3.3e-19 Score=185.95 Aligned_cols=65 Identities=26% Similarity=0.163 Sum_probs=35.3
Q ss_pred ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCC
Q 001036 984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN 1055 (1180)
Q Consensus 984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~ 1055 (1180)
+|+.|+|++|++++..+..+..+++|++|++++|.+++. +++|+.|+++.|+++|.+|.+++.++
T Consensus 125 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 125 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred cCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccCcccc
Confidence 455555555555544444455555555666665555432 23455566666666666666555544
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=4.1e-19 Score=210.99 Aligned_cols=194 Identities=28% Similarity=0.326 Sum_probs=140.5
Q ss_pred CCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCC
Q 001036 763 SLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSK 842 (1180)
Q Consensus 763 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~ 842 (1180)
+|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+| ..+++|++|++++|++++ +|. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~-~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA-SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT-TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc-CCCEEECCC
Confidence 78899999999886 776553 78999999999988 566 457889999999999987 777 443 899999999
Q ss_pred cccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccC
Q 001036 843 NMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLI 922 (1180)
Q Consensus 843 n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 922 (1180)
|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|+|++|++++ +|. +. ++|++|+|++|+|+ .+
T Consensus 130 N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 130 NQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 98886 665 57889999999999986 555 57889999999999886 666 55 88888888888888 44
Q ss_pred CCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCcc
Q 001036 923 PSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQ 1002 (1180)
Q Consensus 923 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~ 1002 (1180)
|. |.. .+ ......|+.|+|++|+|+ .+|..
T Consensus 196 p~-~~~-~L-----------------------------------------------~~~~~~L~~L~Ls~N~l~-~lp~~ 225 (571)
T 3cvr_A 196 PA-VPV-RN-----------------------------------------------HHSEETEIFFRCRENRIT-HIPEN 225 (571)
T ss_dssp CC-CC--------------------------------------------------------CCEEEECCSSCCC-CCCGG
T ss_pred hh-HHH-hh-----------------------------------------------hcccccceEEecCCCcce-ecCHH
Confidence 43 322 10 000123466666666666 45666
Q ss_pred ccCCCCCCEEeCccccccccccccccCC
Q 001036 1003 IGNLTRIQTLNLSHNNLTGTIPLTFSNL 1030 (1180)
Q Consensus 1003 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~l 1030 (1180)
+..+++|+.|+|++|.|++.+|..++.+
T Consensus 226 l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 226 ILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp GGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred HhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 6666666666666666666666665554
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=9.3e-19 Score=183.55 Aligned_cols=156 Identities=22% Similarity=0.273 Sum_probs=127.9
Q ss_pred cEEECcCccCccccchhhhcCCCCCEEecCCCccccCCC-ccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCC
Q 001036 861 VTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVP-IQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNS 939 (1180)
Q Consensus 861 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~ 939 (1180)
+.+++++|.++. +|..+. +.+++|+|++|++++..| ..|..+++|++|+|++|++++..|..|.+++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~--------- 81 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS--------- 81 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT---------
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC---------
Confidence 467778777774 555443 346788888888887654 4577888888888888888887777776543
Q ss_pred CCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccc
Q 001036 940 SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNL 1019 (1180)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 1019 (1180)
.|+.|+|++|++++..|..|+++++|++|+|++|+|
T Consensus 82 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 117 (220)
T 2v70_A 82 --------------------------------------------GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117 (220)
T ss_dssp --------------------------------------------TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred --------------------------------------------CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcC
Confidence 688888889988888888889999999999999999
Q ss_pred cccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCC
Q 001036 1020 TGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 1072 (1180)
Q Consensus 1020 ~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip 1072 (1180)
++..|..|.++++|+.|+|++|+|++..|..|..+++|+.|++++|++++..+
T Consensus 118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 98889999999999999999999998889999999999999999999988776
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=1.2e-18 Score=182.82 Aligned_cols=156 Identities=22% Similarity=0.264 Sum_probs=138.8
Q ss_pred cEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCC
Q 001036 861 VTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSS 940 (1180)
Q Consensus 861 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~ 940 (1180)
+.++++++.++ .+|..+. ++|+.|++++|++++..+..|..+++|++|+|++|++++..|..|.+++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~---------- 80 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR---------- 80 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS----------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc----------
Confidence 57899999998 4565543 6899999999999988888999999999999999999998888887644
Q ss_pred CCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCcccccc
Q 001036 941 PDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLT 1020 (1180)
Q Consensus 941 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 1020 (1180)
.|+.|+|++|+|++..+..|.++++|++|+|++|+|+
T Consensus 81 -------------------------------------------~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 81 -------------------------------------------SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117 (220)
T ss_dssp -------------------------------------------SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -------------------------------------------CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence 7999999999999776677899999999999999999
Q ss_pred ccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCC
Q 001036 1021 GTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 1072 (1180)
Q Consensus 1021 g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip 1072 (1180)
+..|..|.++++|+.|+|++|+|++..|..|..++.|+.|++++|++.+..+
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 9999999999999999999999998888889999999999999999987544
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=8.8e-19 Score=199.46 Aligned_cols=178 Identities=28% Similarity=0.276 Sum_probs=127.0
Q ss_pred cEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhh-cCCCCCEEecCCCccccCCCccccCCCCCCEEECc
Q 001036 836 KQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWID-GLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 914 (1180)
Q Consensus 836 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 914 (1180)
+.++++++.+. .+|. .+. +.++.|+|++|++++..+..|. ++++|++|+|++|+|++..|..|..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~-~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQ-SLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCS-SCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCc-cCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 56777777776 3565 222 3577788888888877777776 77888888888888877777777788888888888
Q ss_pred CCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCc
Q 001036 915 DNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK 994 (1180)
Q Consensus 915 ~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~ 994 (1180)
+|++++..+..|.+++ .|+.|+|++|+
T Consensus 97 ~N~l~~~~~~~~~~l~-----------------------------------------------------~L~~L~L~~N~ 123 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQ-----------------------------------------------------ALEVLLLYNNH 123 (361)
T ss_dssp SSCCCEECTTTTTTCT-----------------------------------------------------TCCEEECCSSC
T ss_pred CCcCCcCCHHHhCCCc-----------------------------------------------------CCCEEECCCCc
Confidence 8887776666665433 67778888888
Q ss_pred ccCCCCccccCCCCCCEEeCccccccccccccc---cCCCCCCEEECcCCcCcccCCccccCCCC--CCEEEcCCCcCcc
Q 001036 995 LVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTF---SNLRHIESLDLSYNKLSGKIPRQLVDLNT--LAIFIVAYNNLSG 1069 (1180)
Q Consensus 995 l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~---~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~--L~~l~ls~N~l~g 1069 (1180)
|++..|..|.++++|+.|+|++|+|++..+..| ..+++|+.|||++|+|++..+..+..++. ++.|++++|++.+
T Consensus 124 i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 877777777777888888888888776544445 55777778888888777655566666665 3667777777765
Q ss_pred c
Q 001036 1070 K 1070 (1180)
Q Consensus 1070 ~ 1070 (1180)
.
T Consensus 204 ~ 204 (361)
T 2xot_A 204 D 204 (361)
T ss_dssp C
T ss_pred C
Confidence 4
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=3.2e-18 Score=179.46 Aligned_cols=154 Identities=23% Similarity=0.252 Sum_probs=131.5
Q ss_pred cEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcC
Q 001036 836 KQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 915 (1180)
Q Consensus 836 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 915 (1180)
+.++++++.++ .+|. .+. ++++.|++++|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~iP~-~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPT-NLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCS-SCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCC-ccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 57888888876 4666 332 6889999999999988888899999999999999999988899999999999999999
Q ss_pred CcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcc
Q 001036 916 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 995 (1180)
Q Consensus 916 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 995 (1180)
|++++..+..|..++ .|+.|+|++|+|
T Consensus 90 N~l~~l~~~~f~~l~-----------------------------------------------------~L~~L~L~~N~l 116 (220)
T 2v9t_B 90 NKITELPKSLFEGLF-----------------------------------------------------SLQLLLLNANKI 116 (220)
T ss_dssp SCCCCCCTTTTTTCT-----------------------------------------------------TCCEEECCSSCC
T ss_pred CcCCccCHhHccCCC-----------------------------------------------------CCCEEECCCCCC
Confidence 999877666665533 788999999999
Q ss_pred cCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCccc
Q 001036 996 VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 1046 (1180)
Q Consensus 996 ~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ 1046 (1180)
++..|..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|++.+.
T Consensus 117 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 117 NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 988888999999999999999999988888899999999999999998753
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=179.61 Aligned_cols=158 Identities=18% Similarity=0.289 Sum_probs=142.3
Q ss_pred CEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCC-CccCcccccccCCCCCCCCCCccccccCCCCCchhhhhh
Q 001036 885 SHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPS-CFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKIL 963 (1180)
Q Consensus 885 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1180)
+.+++++|.++ .+|..+. ..+++|+|++|++++..|. .|..
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~----------------------------------- 55 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKK----------------------------------- 55 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGG-----------------------------------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhcc-----------------------------------
Confidence 58999999998 4676654 4578999999999988653 4544
Q ss_pred hhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcC
Q 001036 964 EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 1043 (1180)
Q Consensus 964 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 1043 (1180)
++.|+.|+|++|+|++..|..|.++++|++|+|++|++++..|..|+++++|+.|+|++|+|
T Consensus 56 ------------------l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 117 (220)
T 2v70_A 56 ------------------LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117 (220)
T ss_dssp ------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred ------------------CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcC
Confidence 33799999999999988888999999999999999999999999999999999999999999
Q ss_pred cccCCccccCCCCCCEEEcCCCcCcccCCCcccccccCCccccCCCCCCCCCCCC
Q 001036 1044 SGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP 1098 (1180)
Q Consensus 1044 ~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~l~ 1098 (1180)
++..|..|..+++|++|++++|++++.+|..+..+..+....+.+||+.|.|++.
T Consensus 118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence 9999999999999999999999999999988888889999999999999998754
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.1e-17 Score=176.78 Aligned_cols=156 Identities=26% Similarity=0.248 Sum_probs=113.6
Q ss_pred CcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCC
Q 001036 860 LVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNS 939 (1180)
Q Consensus 860 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~ 939 (1180)
-+.++.+++.++ .+|..+. ++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~--------- 88 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT--------- 88 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT---------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC---------
Confidence 345666666665 3444332 5677777777777776677777777777777777777665555554433
Q ss_pred CCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccc
Q 001036 940 SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNL 1019 (1180)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 1019 (1180)
.|+.|||++|+|++..+..|..+++|++|+|++|+|
T Consensus 89 --------------------------------------------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 89 --------------------------------------------QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp --------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred --------------------------------------------CcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence 677777777777766666677888888888888888
Q ss_pred cccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCC
Q 001036 1020 TGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIP 1072 (1180)
Q Consensus 1020 ~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip 1072 (1180)
+ .+|..+..+++|+.|+|++|+|++..+..+..++.|+.|++++|++++..+
T Consensus 125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 8 677788888888888888888887666778888888888888888887665
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=4.5e-18 Score=193.61 Aligned_cols=178 Identities=25% Similarity=0.245 Sum_probs=139.1
Q ss_pred CEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCccccc-CCCCCcEEECcCccCccccchhhhcCCCCCEEecCC
Q 001036 813 QILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFF-NCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAH 891 (1180)
Q Consensus 813 ~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 891 (1180)
+.++++++.++ .+|..+ +..++.|++++|.+++..+. .|. ++++|+.|+|++|+|++..|..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~-~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL-PSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSC-CTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccC-CCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57888888887 466543 44688888888888764443 676 888888888888888887778888888888888888
Q ss_pred CccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccc
Q 001036 892 NNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTK 971 (1180)
Q Consensus 892 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1180)
|++++..+..|..+++|++|+|++|++++..|..|.+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~----------------------------------------- 136 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA----------------------------------------- 136 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-----------------------------------------
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc-----------------------------------------
Confidence 888877777888888888888888888887777776543
Q ss_pred cchhcccchhccccceEEccCCcccCCCCccc---cCCCCCCEEeCccccccccccccccCCCC--CCEEECcCCcCccc
Q 001036 972 NIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQI---GNLTRIQTLNLSHNNLTGTIPLTFSNLRH--IESLDLSYNKLSGK 1046 (1180)
Q Consensus 972 ~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~---~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~--L~~L~Ls~N~l~g~ 1046 (1180)
.|+.|+|++|+|++..+..| ..+++|+.|||++|+|++..+..|..++. ++.|+|++|.+.+.
T Consensus 137 ------------~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 137 ------------QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp ------------TCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred ------------cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 68888888888886444445 56888888888888888766677877776 47888888888754
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=1.9e-17 Score=174.85 Aligned_cols=156 Identities=26% Similarity=0.344 Sum_probs=140.6
Q ss_pred CCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhh
Q 001036 884 LSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKIL 963 (1180)
Q Consensus 884 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1180)
.+.++.+++.++ .+|..+. ++|++|+|++|++++..|..|.+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~--------------------------------- 64 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLI--------------------------------- 64 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCT---------------------------------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCcc---------------------------------
Confidence 567999999987 5666554 8999999999999999888887644
Q ss_pred hhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcC
Q 001036 964 EIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 1043 (1180)
Q Consensus 964 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 1043 (1180)
.|+.|+|++|+|++..+..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|+|
T Consensus 65 --------------------~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 65 --------------------NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp --------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred --------------------CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence 799999999999877777789999999999999999988888899999999999999999
Q ss_pred cccCCccccCCCCCCEEEcCCCcCcccCCCcccccccCCccccCCCCCCCCCC
Q 001036 1044 SGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 1096 (1180)
Q Consensus 1044 ~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~ 1096 (1180)
+ .+|..+..+++|++|++++|++++..+..+..+..+....+.+||+.|.|+
T Consensus 125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 9 899999999999999999999998777767788889999999999999986
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=1e-17 Score=201.67 Aligned_cols=168 Identities=24% Similarity=0.353 Sum_probs=114.6
Q ss_pred CCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccC
Q 001036 716 LEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPK 795 (1180)
Q Consensus 716 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 795 (1180)
+..+.+..+.+....+ +..+++|+.|++++|.+... | .+..+++|+.|+|++|.+.+..| +..+++|+.|++++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 4445566666654433 45677788888888877643 3 46777777777777777775443 67777777777777
Q ss_pred CcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccc
Q 001036 796 NHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP 875 (1180)
Q Consensus 796 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 875 (1180)
|.+.+. | .+..+++|+.|++++|++.+ ++ .+..+++|+.|+|++|.+++.
T Consensus 97 N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~------------------------l~--~l~~l~~L~~L~Ls~N~l~~l-- 146 (605)
T 1m9s_A 97 NKIKDL-S-SLKDLKKLKSLSLEHNGISD------------------------IN--GLVHLPQLESLYLGNNKITDI-- 146 (605)
T ss_dssp SCCCCC-T-TSTTCTTCCEEECTTSCCCC------------------------CG--GGGGCTTCSEEECCSSCCCCC--
T ss_pred CCCCCC-h-hhccCCCCCEEEecCCCCCC------------------------Cc--cccCCCccCEEECCCCccCCc--
Confidence 777642 2 56666777777777776652 11 366677788888888877764
Q ss_pred hhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCccc
Q 001036 876 DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 921 (1180)
Q Consensus 876 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 921 (1180)
..+..+++|+.|+|++|++.+..| +..+++|+.|+|++|++++.
T Consensus 147 ~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 147 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence 567777777777777777776555 77777777777777777653
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=2e-17 Score=181.67 Aligned_cols=173 Identities=24% Similarity=0.374 Sum_probs=136.5
Q ss_pred cCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCE
Q 001036 807 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSH 886 (1180)
Q Consensus 807 ~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 886 (1180)
..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|++++..| +..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~------------------------~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~ 94 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS------------------------VQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGW 94 (291)
T ss_dssp HHHHTCCEEECTTSCCCC------------------------CT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hhcCcccEEEccCCCccc------------------------Ch--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCE
Confidence 346667777777776652 22 36678889999999999887655 888899999
Q ss_pred EecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhh
Q 001036 887 LNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIF 966 (1180)
Q Consensus 887 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 966 (1180)
|++++|++++ +| .+..+++|++|++++|++++. ..+..
T Consensus 95 L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~-------------------------------------- 132 (291)
T 1h6t_A 95 LFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVH-------------------------------------- 132 (291)
T ss_dssp EECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGG--------------------------------------
T ss_pred EECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcC--------------------------------------
Confidence 9999998875 33 488889999999999988763 12222
Q ss_pred hhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCccc
Q 001036 967 EFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGK 1046 (1180)
Q Consensus 967 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ 1046 (1180)
++.|+.|++++|++++. ..++.+++|+.|++++|++++..| ++.+++|+.|++++|++++
T Consensus 133 ---------------l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~- 192 (291)
T 1h6t_A 133 ---------------LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD- 192 (291)
T ss_dssp ---------------CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-
T ss_pred ---------------CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-
Confidence 34788999999999865 578889999999999999997666 8889999999999999985
Q ss_pred CCccccCCCCCCEEEcCCCcCccc
Q 001036 1047 IPRQLVDLNTLAIFIVAYNNLSGK 1070 (1180)
Q Consensus 1047 ip~~l~~l~~L~~l~ls~N~l~g~ 1070 (1180)
+| .+..++.|+.|++++|+++..
T Consensus 193 l~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 193 LR-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CG-GGTTCTTCSEEEEEEEEEECC
T ss_pred Ch-hhccCCCCCEEECcCCcccCC
Confidence 44 488899999999999988863
No 111
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=2.4e-17 Score=168.75 Aligned_cols=112 Identities=29% Similarity=0.433 Sum_probs=76.6
Q ss_pred ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036 984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus 984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
.|+.|||++|+|++.+|..|+++++|++|+|++|+|++..|..|+++++|+.|+|++|+|++.+|..+..+++|++|+++
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 56777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCcCcccCCC-cccccccCCccccCCCCCCCCCCC
Q 001036 1064 YNNLSGKIPE-WTAQFATFNKSSYDGNPFLCGLPL 1097 (1180)
Q Consensus 1064 ~N~l~g~ip~-~~~~~~~~~~~~~~~N~~lc~~~l 1097 (1180)
+|+++|.++. ++.. .+....+.++...|+.|.
T Consensus 135 ~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 135 SNPFNCNCHLAWFAE--WLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp TCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCSST
T ss_pred CCCccCcCcchHHHH--HHHHcCCCCCCCCCCCCh
Confidence 7777776653 1111 112223445555666553
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=6.5e-20 Score=219.60 Aligned_cols=77 Identities=25% Similarity=0.234 Sum_probs=45.0
Q ss_pred ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccc-cccccCCCCCCEEECcCCcCcccCCcc---ccCCCCCCE
Q 001036 984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI-PLTFSNLRHIESLDLSYNKLSGKIPRQ---LVDLNTLAI 1059 (1180)
Q Consensus 984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~-p~~~~~l~~L~~L~Ls~N~l~g~ip~~---l~~l~~L~~ 1059 (1180)
.|+.|+|++|+|++ +| .++++++|++|+|++|+|++.+ |..|+.+++|+.|+|++|++++.+|.. +..+++|+.
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 45555555555554 44 5666666666666666666655 666666666666666666666554422 223566666
Q ss_pred EEc
Q 001036 1060 FIV 1062 (1180)
Q Consensus 1060 l~l 1062 (1180)
||+
T Consensus 565 L~l 567 (567)
T 1dce_A 565 ILT 567 (567)
T ss_dssp EEC
T ss_pred cCC
Confidence 653
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=4.1e-17 Score=167.05 Aligned_cols=176 Identities=23% Similarity=0.266 Sum_probs=119.6
Q ss_pred cEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCc-cccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCC
Q 001036 861 VTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPI-QLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNS 939 (1180)
Q Consensus 861 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~ 939 (1180)
+.+++++|.++ .+|..+.. +|++|++++|++++..+. .+..+++|++|+|++|++++..|..|.+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--------- 78 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS--------- 78 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT---------
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc---------
Confidence 56777777775 45554432 677788888877766554 477788888888888888877777776543
Q ss_pred CCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccc
Q 001036 940 SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNL 1019 (1180)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 1019 (1180)
.|+.|+|++|+|++..|..|.++++|++|+|++|+|
T Consensus 79 --------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 114 (192)
T 1w8a_A 79 --------------------------------------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114 (192)
T ss_dssp --------------------------------------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCC
T ss_pred --------------------------------------------cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence 678888888888888888888888999999999999
Q ss_pred cccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccCCCcccccccCCccccCCCCCCCCCC
Q 001036 1020 TGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 1096 (1180)
Q Consensus 1020 ~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~ 1096 (1180)
++.+|..|+.+++|+.|+|++|++++..+.... ...++...+..+...+..|... ....-.++..+.+.|..+
T Consensus 115 ~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~-~~~l~~~~~~~~~~~C~~P~~l---~~~~l~~l~~~~~~C~~~ 187 (192)
T 1w8a_A 115 SCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFKCSSE 187 (192)
T ss_dssp CEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCCCCCC
T ss_pred CeeCHHHhhcCCCCCEEEeCCCCccCcCcchHH-HHHHHHcCCCCCCCCCCCChHH---cCCChhhCcHhhcCcCCC
Confidence 998899999999999999999999887663210 0011112333444444444422 222233455556666543
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1.1e-16 Score=192.56 Aligned_cols=200 Identities=23% Similarity=0.309 Sum_probs=168.5
Q ss_pred cccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEE
Q 001036 688 VIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGL 767 (1180)
Q Consensus 688 l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 767 (1180)
+..+..+.+..+.+...++. ..+++|+.|++++|.+... +.+..+++|+.|+|++|.+.+..| +..+++|+.|
T Consensus 20 l~~l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 92 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred HHHHHHHhccCCCcccccch---hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence 34456667788877744443 3578999999999999864 358899999999999999997665 8899999999
Q ss_pred ECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCccccc
Q 001036 768 YLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHG 847 (1180)
Q Consensus 768 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~ 847 (1180)
+|++|.+.+ +| .+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|++++.
T Consensus 93 ~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l---------------------- 146 (605)
T 1m9s_A 93 FLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI---------------------- 146 (605)
T ss_dssp ECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC----------------------
T ss_pred ECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc----------------------
Confidence 999999985 44 789999999999999999863 4688899999999999988732
Q ss_pred ccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCcc
Q 001036 848 QLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD 927 (1180)
Q Consensus 848 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 927 (1180)
. .+..+++|+.|+|++|.+++..| +..+++|+.|+|++|++++. ..+..+++|+.|+|++|++++.....+.
T Consensus 147 ---~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~ 218 (605)
T 1m9s_A 147 ---T-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQS 218 (605)
T ss_dssp ---G-GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCS
T ss_pred ---h-hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccc
Confidence 1 57889999999999999998777 99999999999999999864 4689999999999999999876554444
Q ss_pred C
Q 001036 928 N 928 (1180)
Q Consensus 928 ~ 928 (1180)
.
T Consensus 219 ~ 219 (605)
T 1m9s_A 219 N 219 (605)
T ss_dssp S
T ss_pred c
Confidence 4
No 115
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=2.5e-16 Score=172.88 Aligned_cols=153 Identities=26% Similarity=0.404 Sum_probs=90.5
Q ss_pred ccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCC
Q 001036 734 IFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQ 813 (1180)
Q Consensus 734 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 813 (1180)
+..+++|++|++++|++++..+ +..+++|++|++++|.+++ +| .+..+++|++|++++|++++. ..+..+++|+
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~ 137 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE 137 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCC
T ss_pred HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCC
Confidence 3444455555555555444332 4555555555555555543 22 255555666666666655542 3455566666
Q ss_pred EEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCc
Q 001036 814 ILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNN 893 (1180)
Q Consensus 814 ~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 893 (1180)
.|++++|++++. . .+..+++|+.|++++|++++..| +..+++|+.|++++|.
T Consensus 138 ~L~l~~n~l~~~-------------------------~-~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 138 SLYLGNNKITDI-------------------------T-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECCSSCCCCC-------------------------G-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEccCCcCCcc-------------------------h-hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 666666665421 1 45666777777777777776544 7777777777777777
Q ss_pred cccCCCccccCCCCCCEEECcCCcCcccC
Q 001036 894 LEGEVPIQLCRLNQLQLLDLSDNNLHGLI 922 (1180)
Q Consensus 894 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 922 (1180)
+++ +| .+..+++|+.|++++|+++...
T Consensus 190 i~~-l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 190 ISD-LR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CCB-CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred CCC-Ch-hhccCCCCCEEECcCCcccCCc
Confidence 764 33 3677777777777777776543
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=9.6e-17 Score=165.32 Aligned_cols=156 Identities=17% Similarity=0.220 Sum_probs=126.6
Q ss_pred ccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCccccc
Q 001036 854 FFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHE 933 (1180)
Q Consensus 854 ~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 933 (1180)
...+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..|..++.++
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~--- 112 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT--- 112 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT---
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC---
Confidence 355678899999999988 555 6888999999999999665 345788899999999999999887777665533
Q ss_pred ccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEe
Q 001036 934 SYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLN 1013 (1180)
Q Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ 1013 (1180)
.|+.|++++|++++..|..++.+++|++|+
T Consensus 113 --------------------------------------------------~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 113 --------------------------------------------------SLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp --------------------------------------------------TCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred --------------------------------------------------CCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 788999999999988888899999999999
Q ss_pred CccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcc
Q 001036 1014 LSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG 1069 (1180)
Q Consensus 1014 Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g 1069 (1180)
+++|++.+.+| .++.+++|+.|++++|++++ +| .+..++.|+.|++++|++.+
T Consensus 143 L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 143 LSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred ccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 99998444566 68889999999999999985 44 78889999999999998764
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=1.3e-16 Score=172.17 Aligned_cols=168 Identities=20% Similarity=0.247 Sum_probs=137.4
Q ss_pred ccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECc
Q 001036 835 IKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLS 914 (1180)
Q Consensus 835 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls 914 (1180)
+..+++++|.+.+ ++ .+..+++|+.|++++|.++. +| .++.+++|++|++++|++++..+ +..+++|++|+++
T Consensus 21 l~~l~l~~~~i~~-~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 21 AVKQNLGKQSVTD-LV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHTCSCTTS-EE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHhcCCCccc-cc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3344455555442 22 46778899999999999984 45 68899999999999999997555 8999999999999
Q ss_pred CCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCc
Q 001036 915 DNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNK 994 (1180)
Q Consensus 915 ~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~ 994 (1180)
+|++++..+... +.|+.|+|++|+
T Consensus 94 ~N~l~~l~~~~~--------------------------------------------------------~~L~~L~L~~N~ 117 (263)
T 1xeu_A 94 RNRLKNLNGIPS--------------------------------------------------------ACLSRLFLDNNE 117 (263)
T ss_dssp SSCCSCCTTCCC--------------------------------------------------------SSCCEEECCSSC
T ss_pred CCccCCcCcccc--------------------------------------------------------CcccEEEccCCc
Confidence 999986432111 268999999999
Q ss_pred ccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcccC
Q 001036 995 LVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSGKI 1071 (1180)
Q Consensus 995 l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~i 1071 (1180)
+++. | .++.+++|+.|+|++|++++. | .++.+++|+.|+|++|++++. ..+..++.|+.|++++|++++..
T Consensus 118 l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 118 LRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred cCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 9963 4 599999999999999999975 4 689999999999999999976 77899999999999999998764
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=2.5e-18 Score=205.96 Aligned_cols=184 Identities=20% Similarity=0.275 Sum_probs=141.3
Q ss_pred cCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCcc-------------Cccc
Q 001036 807 CRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNY-------------LNGS 873 (1180)
Q Consensus 807 ~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~-------------l~~~ 873 (1180)
...+.|+.|++++|++. . +|. .+.++++|+.|++++|. +.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~-----------------------Lp~-~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~ 400 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-V-----------------------LQS-ELESCKELQELEPENKWCLLTIILLMRALDPLLY 400 (567)
T ss_dssp STTTTSSSCCCCHHHHH-H-----------------------HHH-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG
T ss_pred ccCccceeccCChhhHH-h-----------------------hHH-HHHHHHHHHHhccccchhhhhHHHHHHhcccccC
Confidence 34567777777777775 3 343 45555566666665553 5667
Q ss_pred cchhhhcCCCCCEEe-cCCCccccCCCc-----cccC--CCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCC
Q 001036 874 IPDWIDGLSQLSHLN-LAHNNLEGEVPI-----QLCR--LNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPF 945 (1180)
Q Consensus 874 ~p~~~~~l~~L~~L~-L~~N~l~~~~p~-----~~~~--l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~ 945 (1180)
+|..++++++|+.|+ ++.|.+...... .+.. ...|+.|+|++|++++ +|. |+++
T Consensus 401 ~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l---------------- 462 (567)
T 1dce_A 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQL---------------- 462 (567)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGG----------------
T ss_pred CHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-cccc----------------
Confidence 778888888888887 555543211000 0110 1358999999999997 454 5543
Q ss_pred ccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccc
Q 001036 946 KTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPL 1025 (1180)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~ 1025 (1180)
+.|+.|||++|+|+ .+|..|+++++|+.|+|++|+|++ +|
T Consensus 463 -------------------------------------~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp- 502 (567)
T 1dce_A 463 -------------------------------------LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD- 502 (567)
T ss_dssp -------------------------------------TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-
T ss_pred -------------------------------------ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-
Confidence 37999999999999 889999999999999999999997 67
Q ss_pred cccCCCCCCEEECcCCcCcccC-CccccCCCCCCEEEcCCCcCcccCCC
Q 001036 1026 TFSNLRHIESLDLSYNKLSGKI-PRQLVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus 1026 ~~~~l~~L~~L~Ls~N~l~g~i-p~~l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
.|+++++|+.|+|++|+|++.+ |..+..++.|+.|++++|++++.+|.
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 8999999999999999999887 99999999999999999999998775
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=2.5e-17 Score=203.90 Aligned_cols=216 Identities=19% Similarity=0.160 Sum_probs=100.4
Q ss_pred ccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCC---------CCcccccCCCCCCeEEccCCcCCCCCCccccC
Q 001036 738 RNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSG---------KIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCR 808 (1180)
Q Consensus 738 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~---------~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 808 (1180)
+.++.|+|.+|.+... +.. .|+.++|+.|.+.+ ..|..+..++.|+.|+|++|.+. .+|..+..
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~ 245 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFK 245 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGG
T ss_pred CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcC
Confidence 5677888888877753 332 23444444444432 23444455555555555555554 34444444
Q ss_pred CCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEe
Q 001036 809 LDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLN 888 (1180)
Q Consensus 809 l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 888 (1180)
+++|++|+|++|.++ .+|. .|.++++|+.|+|++|.|+ .+|..|+++++|++|+
T Consensus 246 l~~L~~L~Ls~N~l~------------------------~lp~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLT------------------------ELPA-EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCSCSCCBCTTSCCS------------------------CCCG-GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEE
T ss_pred CCCCCEEEeeCCcCc------------------------ccCh-hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEE
Confidence 555555555555444 4554 6788888999999999988 6788888899999999
Q ss_pred cCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhh
Q 001036 889 LAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEF 968 (1180)
Q Consensus 889 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 968 (1180)
|++|.|+ .+|..|+.+++|++|+|++|+|++.+|..+.....
T Consensus 300 L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~------------------------------------- 341 (727)
T 4b8c_D 300 FFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV------------------------------------- 341 (727)
T ss_dssp CCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH-------------------------------------
T ss_pred CCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcch-------------------------------------
Confidence 9999887 67878888999999999999998887776644220
Q ss_pred ccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccc--------cccccccccccCCCCCCEEECcC
Q 001036 969 TTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHN--------NLTGTIPLTFSNLRHIESLDLSY 1040 (1180)
Q Consensus 969 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N--------~l~g~~p~~~~~l~~L~~L~Ls~ 1040 (1180)
....++|++|.++|.+|.. |+.|++++| .+++.++..+.++..++...+++
T Consensus 342 ---------------~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~ 400 (727)
T 4b8c_D 342 ---------------TGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSY 400 (727)
T ss_dssp ---------------HHHHHHHHHCCCCCCCCCC----------------------------------------------
T ss_pred ---------------hhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeec
Confidence 1223678888888888864 456667776 45555555556666666677777
Q ss_pred CcCcc
Q 001036 1041 NKLSG 1045 (1180)
Q Consensus 1041 N~l~g 1045 (1180)
|.+.+
T Consensus 401 Nil~~ 405 (727)
T 4b8c_D 401 NTLCQ 405 (727)
T ss_dssp -CCCG
T ss_pred ccccc
Confidence 76653
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=3.3e-17 Score=202.79 Aligned_cols=184 Identities=21% Similarity=0.181 Sum_probs=99.3
Q ss_pred CCCCEEEccCCcccccccccccCCccCce-----eeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCC
Q 001036 714 VNLEFLSLSNNSLKGHIFSRIFSLRNLRW-----LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGL 788 (1180)
Q Consensus 714 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-----L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 788 (1180)
+.++.|++.+|.+... +..+.....|.. +++..|.+. ..|..+..++.|+.|+|++|.+. .+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 4566777777776653 222222222222 222223332 34666777777888888877776 666666677778
Q ss_pred CeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCc
Q 001036 789 QHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYN 868 (1180)
Q Consensus 789 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n 868 (1180)
++|+|++|.++ .+|..|..+++|++|+|++|+++ .+|. .|.++++|+.|+|++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~------------------------~~~~l~~L~~L~L~~N 303 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPA------------------------ELGSCFQLKYFYFFDN 303 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCS------------------------SGGGGTTCSEEECCSS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccCh------------------------hhcCCCCCCEEECCCC
Confidence 88888888777 67777777777777777777776 3332 5666777778888887
Q ss_pred cCccccchhhhcCCCCCEEecCCCccccCCCccccCCCC-CCEEECcCCcCcccCCCCcc
Q 001036 869 YLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQ-LQLLDLSDNNLHGLIPSCFD 927 (1180)
Q Consensus 869 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~ 927 (1180)
.|+ .+|..|+.+++|++|+|++|++++.+|..+..+.. +..++|++|.++|.+|..+.
T Consensus 304 ~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~ 362 (727)
T 4b8c_D 304 MVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERR 362 (727)
T ss_dssp CCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred CCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccc
Confidence 776 56666777778888888888877777776654322 22367777777777766543
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=4.1e-16 Score=168.29 Aligned_cols=174 Identities=20% Similarity=0.241 Sum_probs=111.7
Q ss_pred CCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEc
Q 001036 714 VNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVM 793 (1180)
Q Consensus 714 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 793 (1180)
.++..+++++|.+++.. .+..+++|++|++++|.++. +| .+..+++|++|++++|++++..| +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34445555555555332 34555556666666655553 23 45555555555555555553322 555555555555
Q ss_pred cCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccc
Q 001036 794 PKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGS 873 (1180)
Q Consensus 794 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 873 (1180)
++|++++. |.... .+|+.|++++|.+++ ++ .+..+++|+.|++++|++++.
T Consensus 93 ~~N~l~~l-------------------------~~~~~-~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 93 NRNRLKNL-------------------------NGIPS-ACLSRLFLDNNELRD-TD--SLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp CSSCCSCC-------------------------TTCCC-SSCCEEECCSSCCSB-SG--GGTTCTTCCEEECTTSCCCBC
T ss_pred CCCccCCc-------------------------Ccccc-CcccEEEccCCccCC-Ch--hhcCcccccEEECCCCcCCCC
Confidence 55555432 22111 444455555554443 22 588899999999999999975
Q ss_pred cchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCc
Q 001036 874 IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCF 926 (1180)
Q Consensus 874 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 926 (1180)
| .++.+++|++|++++|++++. ..+..+++|+.|++++|++++.....+
T Consensus 144 -~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~~~~ 192 (263)
T 1xeu_A 144 -V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQ 192 (263)
T ss_dssp -G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCEECC
T ss_pred -h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCccccc
Confidence 4 689999999999999999976 678899999999999999987744433
No 122
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=1.3e-15 Score=156.85 Aligned_cols=152 Identities=15% Similarity=0.144 Sum_probs=103.2
Q ss_pred CCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCcee
Q 001036 664 LPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWL 743 (1180)
Q Consensus 664 l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 743 (1180)
+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .++ . +..+++|++|++++|.+++..+..+..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 456666666666666 334 4666667777777777554 333 2 2356777777777777776667777777777777
Q ss_pred eccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCccc
Q 001036 744 LLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNIS 823 (1180)
Q Consensus 744 ~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 823 (1180)
++++|.+++..|..++.+++|++|++++|.+.+.+| .+..+++|++|++++|++++. + .+..+++|+.|++++|++.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 777777777667777777788888888777223455 577778888888888877753 3 6677788888888888765
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=1.5e-15 Score=152.00 Aligned_cols=62 Identities=27% Similarity=0.324 Sum_probs=33.9
Q ss_pred CCCcEEECcCccCc-cccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCccc
Q 001036 858 SSLVTLDLSYNYLN-GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 921 (1180)
Q Consensus 858 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 921 (1180)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~ 86 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG 86 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchH
Confidence 45566666666655 45555555555566665555555543 4445555555555555555443
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.59 E-value=3.5e-15 Score=167.51 Aligned_cols=76 Identities=16% Similarity=0.070 Sum_probs=39.5
Q ss_pred ccceEEccCCcccCCCCccccCCCCCC-EEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEE
Q 001036 984 LLAGLDLSCNKLVGHIPPQIGNLTRIQ-TLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFI 1061 (1180)
Q Consensus 984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~-~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ 1061 (1180)
+|+.|+|++| ++..-+.+|.++++|+ .+++++ +++.+-+.+|.++++|+.+++++|+++...+.+|.++++|+.++
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 3444444444 4433344455555555 555555 45544445555555555555555555544445555555555543
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=4.4e-15 Score=151.67 Aligned_cols=114 Identities=23% Similarity=0.378 Sum_probs=99.9
Q ss_pred ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036 984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus 984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
.++.|+|++|+|+ .+|..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..|..|..+++|++|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 5788999999998 788889999999999999999998888889999999999999999998888889999999999999
Q ss_pred CCcCcccCCCcccccccCCccccCCCCCCCCCCCC
Q 001036 1064 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPLP 1098 (1180)
Q Consensus 1064 ~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~l~ 1098 (1180)
+|++++..+..+..+..+....+.+||+.|+|.+.
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ 145 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence 99999766666677788888889999999988654
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=1.7e-15 Score=170.12 Aligned_cols=283 Identities=16% Similarity=0.124 Sum_probs=139.2
Q ss_pred CCcccEEEccCCcccCCCCCCCCC-CCCccEEEccCCcccc-cCChhhhhcCCCCcEEEccCCcCCccCCccccC-----
Q 001036 615 NTKLEFLYLVNDSLAGPFRLPIHS-HKRLRFLDVSNNNFQG-HIPVEIGDILPSLVYFNISMNALDGSIPSSFGN----- 687 (1180)
Q Consensus 615 ~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~~n~l~~-~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~----- 687 (1180)
..+++.|.++++--... ...+.. +++|+.||+++|++.. ..+... ++.+..+.+..|. +.+.+|.+
T Consensus 24 ~~~l~~L~l~g~i~~~~-~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~---I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAED-FRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANF---VPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEECHHH-HHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTE---ECTTTTEEEETTE
T ss_pred hCceeEEEEeccccHHH-HHHHHHhhccCeEEecCcceeEEecCcccc---ccccccccccccc---cCHHHhccccccc
Confidence 44566777765321100 001111 5667777777777651 001111 1223334444442 23345555
Q ss_pred ---cccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCc----ccccCCCcCCC
Q 001036 688 ---VIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNH----FVGEIPQSLSK 760 (1180)
Q Consensus 688 ---l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~~~p~~~~~ 760 (1180)
+++|+.+++.+ .++ .|++..|.+|++|+.+++++|.+....+.+|.++.++..+.+..+. .....+..|.+
T Consensus 97 ~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred ccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 77777777777 666 6777777777777777777777776666777776666666655532 12223344555
Q ss_pred CCCCc-EEECcCCcCCCCCccccc----CCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCC-Cc
Q 001036 761 CSSLK-GLYLNNNNLSGKIPRWLG----NLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYP-LS 834 (1180)
Q Consensus 761 l~~L~-~L~l~~n~l~~~~p~~~~----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-~~ 834 (1180)
+..|+ .+.+.... .++..+. ...+++.+.+.++-...........+++|+.+++++|+++...+.+|.. .+
T Consensus 175 ~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~ 251 (329)
T 3sb4_A 175 GEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY 251 (329)
T ss_dssp SCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred ccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence 56665 44443221 1222111 2334444544443111000001113567777777777766322222221 23
Q ss_pred ccEEEcCCcccccccCcccccCCCCCc-EEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEE
Q 001036 835 IKQVHLSKNMLHGQLKEGTFFNCSSLV-TLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLD 912 (1180)
Q Consensus 835 L~~L~l~~n~~~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 912 (1180)
|+.+++.+| + ..++..+|.+|++|+ .+++.+ .++.+.+..|.+|++|+.+++++|+++...+.+|.++++|+.++
T Consensus 252 L~~l~l~~n-i-~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 252 LLKIKLPHN-L-KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCEEECCTT-C-CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCEEECCcc-c-ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 333333333 1 134444555555555 555555 44444445555555555555555555544455555555555543
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=2.9e-15 Score=149.94 Aligned_cols=137 Identities=22% Similarity=0.236 Sum_probs=119.7
Q ss_pred CCCCCEEecCCCccc-cCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchh
Q 001036 881 LSQLSHLNLAHNNLE-GEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVE 959 (1180)
Q Consensus 881 l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 959 (1180)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------------- 69 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK------------------------------- 69 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC-------------------------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc-------------------------------
Confidence 478999999999998 78899999999999999999999876 44443
Q ss_pred hhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccc-cccccCCCCCCEEEC
Q 001036 960 KKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTI-PLTFSNLRHIESLDL 1038 (1180)
Q Consensus 960 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~-p~~~~~l~~L~~L~L 1038 (1180)
++.|+.|+|++|++++.+|..+.++++|++|+|++|++++.. +..++.+++|+.|++
T Consensus 70 ----------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l 127 (168)
T 2ell_A 70 ----------------------LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127 (168)
T ss_dssp ----------------------CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred ----------------------CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence 337999999999999889988889999999999999999753 378999999999999
Q ss_pred cCCcCcccCC---ccccCCCCCCEEEcCCCcCcccCCC
Q 001036 1039 SYNKLSGKIP---RQLVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus 1039 s~N~l~g~ip---~~l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
++|++++..+ ..+..++.|++|++++|.+. .+|.
T Consensus 128 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 128 FNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred eCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 9999997665 58999999999999999987 4443
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1e-14 Score=147.36 Aligned_cols=89 Identities=24% Similarity=0.251 Sum_probs=65.9
Q ss_pred ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036 984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus 984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
.|+.|++++|++++..+..|+++++|++|+|++|++++..|..|+++++|+.|++++|++++..+..+..++.|++|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 56667777777766555566777777777777777777766677777788888888888876555556777788888888
Q ss_pred CCcCcccCC
Q 001036 1064 YNNLSGKIP 1072 (1180)
Q Consensus 1064 ~N~l~g~ip 1072 (1180)
+|+++|.+|
T Consensus 133 ~N~~~~~~~ 141 (177)
T 2o6r_A 133 TNPWDCSCP 141 (177)
T ss_dssp SSCBCCCHH
T ss_pred CCCeeccCc
Confidence 888877766
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.1e-14 Score=148.80 Aligned_cols=88 Identities=30% Similarity=0.312 Sum_probs=59.7
Q ss_pred ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036 984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus 984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
.|+.|||++|+|++..|..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..++.|+.|+++
T Consensus 55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 45556666666665555666666777777777777776666677777777777777777775555567777777777777
Q ss_pred CCcCcccC
Q 001036 1064 YNNLSGKI 1071 (1180)
Q Consensus 1064 ~N~l~g~i 1071 (1180)
+|++.+..
T Consensus 135 ~N~~~C~c 142 (193)
T 2wfh_A 135 ANPLYCDC 142 (193)
T ss_dssp SSCEECSG
T ss_pred CCCeecCC
Confidence 77776544
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=2.1e-15 Score=147.45 Aligned_cols=80 Identities=23% Similarity=0.213 Sum_probs=54.0
Q ss_pred ccceEEccCCcccCCCCccccCCCCCCEEeCcccccccc-ccccccCCCCCCEEECcCCcCcccCC---ccccCCCCCCE
Q 001036 984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGT-IPLTFSNLRHIESLDLSYNKLSGKIP---RQLVDLNTLAI 1059 (1180)
Q Consensus 984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~-~p~~~~~l~~L~~L~Ls~N~l~g~ip---~~l~~l~~L~~ 1059 (1180)
.|+.||+++|++++.+|..++.+++|++|++++|++++. .|..++.+++|+.|++++|++++..+ ..+..+++|++
T Consensus 65 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 144 (149)
T 2je0_A 65 KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY 144 (149)
T ss_dssp TCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred CCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence 566666666666665666666667777777777777753 34667777777777777777776555 46677777777
Q ss_pred EEcC
Q 001036 1060 FIVA 1063 (1180)
Q Consensus 1060 l~ls 1063 (1180)
||++
T Consensus 145 L~l~ 148 (149)
T 2je0_A 145 LDGY 148 (149)
T ss_dssp ETTB
T ss_pred ccCC
Confidence 7665
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=1.4e-14 Score=146.18 Aligned_cols=133 Identities=27% Similarity=0.277 Sum_probs=105.6
Q ss_pred CcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCC
Q 001036 860 LVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNS 939 (1180)
Q Consensus 860 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~ 939 (1180)
.+.+++++|+++. +|..+ .++|++|++++|++++..+..+..+++|++|++++|++++..+..|++++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--------- 76 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT--------- 76 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT---------
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC---------
Confidence 3567777777763 44333 35788888888888876667778888888888888888876666665433
Q ss_pred CCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccc
Q 001036 940 SPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNL 1019 (1180)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 1019 (1180)
.|+.|+|++|++++..+..+.++++|++|+|++|++
T Consensus 77 --------------------------------------------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 112 (177)
T 2o6r_A 77 --------------------------------------------KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112 (177)
T ss_dssp --------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred --------------------------------------------ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc
Confidence 688899999999877777788999999999999999
Q ss_pred cccccccccCCCCCCEEECcCCcCcccCC
Q 001036 1020 TGTIPLTFSNLRHIESLDLSYNKLSGKIP 1048 (1180)
Q Consensus 1020 ~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip 1048 (1180)
++..+..|..+++|+.|+|++|++++..|
T Consensus 113 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 113 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred eEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 97777778889999999999999998766
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=9.8e-14 Score=158.56 Aligned_cols=239 Identities=12% Similarity=0.088 Sum_probs=121.1
Q ss_pred CccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEE
Q 001036 641 RLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLS 720 (1180)
Q Consensus 641 ~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~ 720 (1180)
+|+.+++..+ ++ .|+...|.. .+|+.+.+.. .++.+.+.+|.+|.+|+.+++++|+++ .++...|. +.+|+.+.
T Consensus 136 ~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~ 209 (401)
T 4fdw_A 136 QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVL 209 (401)
T ss_dssp CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEE
T ss_pred CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEE
Confidence 4566665544 33 455555543 3566666664 555555666666777777777666666 66666654 46666666
Q ss_pred ccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCC-
Q 001036 721 LSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLE- 799 (1180)
Q Consensus 721 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~- 799 (1180)
+..+ ++.+...+|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.++..-+.+|.++++|+.+++.+|.+.
T Consensus 210 lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~ 285 (401)
T 4fdw_A 210 LPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFND 285 (401)
T ss_dssp CCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCC
T ss_pred eCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccC
Confidence 6533 55555555666666666666553 33334444544 455555552 2333233344444555555554444332
Q ss_pred ----CCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccc
Q 001036 800 ----GPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIP 875 (1180)
Q Consensus 800 ----~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 875 (1180)
...+.+|.++++|+.+++.+ .+. .++..+|.+|++|+.+++..| ++.+-+
T Consensus 286 ~~~~~I~~~aF~~c~~L~~l~l~~-~i~------------------------~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 286 DPEAMIHPYCLEGCPKLARFEIPE-SIR------------------------ILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp CTTCEECTTTTTTCTTCCEECCCT-TCC------------------------EECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred CcccEECHHHhhCCccCCeEEeCC-ceE------------------------EEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 12233344444444444331 121 233335555555555555333 443444
Q ss_pred hhhhcCCCCCEEecCCCccccCCCccccCCC-CCCEEECcCC
Q 001036 876 DWIDGLSQLSHLNLAHNNLEGEVPIQLCRLN-QLQLLDLSDN 916 (1180)
Q Consensus 876 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N 916 (1180)
.+|.++ +|+.+++.+|.+....+..|.+++ .++.|.+..+
T Consensus 340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 455555 555555555555444444444442 4445544443
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=3.3e-15 Score=146.08 Aligned_cols=128 Identities=26% Similarity=0.292 Sum_probs=102.3
Q ss_pred CCCcEEECcCccCc-cccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccC
Q 001036 858 SSLVTLDLSYNYLN-GSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYN 936 (1180)
Q Consensus 858 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~ 936 (1180)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-------- 86 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-------- 86 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH--------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh--------
Confidence 57888888888887 67777788888888888888888765 67788888888888888888766554433
Q ss_pred CCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCC-CCccccCCCCCCEEeCc
Q 001036 937 NNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGH-IPPQIGNLTRIQTLNLS 1015 (1180)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~-~p~~~~~l~~L~~L~Ls 1015 (1180)
++.|+.|++++|++++. .|..++.+++|++|+++
T Consensus 87 ---------------------------------------------l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~ 121 (149)
T 2je0_A 87 ---------------------------------------------CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121 (149)
T ss_dssp ---------------------------------------------CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECT
T ss_pred ---------------------------------------------CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCc
Confidence 33688888888888863 34788899999999999
Q ss_pred ccccccccc---ccccCCCCCCEEECcC
Q 001036 1016 HNNLTGTIP---LTFSNLRHIESLDLSY 1040 (1180)
Q Consensus 1016 ~N~l~g~~p---~~~~~l~~L~~L~Ls~ 1040 (1180)
+|.+++..+ ..++.+++|+.||+++
T Consensus 122 ~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 122 NCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999997766 5788899999999874
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.52 E-value=3.8e-13 Score=153.68 Aligned_cols=265 Identities=13% Similarity=0.153 Sum_probs=167.1
Q ss_pred CCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEE
Q 001036 713 CVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIV 792 (1180)
Q Consensus 713 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 792 (1180)
+..++.+.+.. .++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.+ .+...-+.+|.++++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 45566666653 3444445555553 5666666555 444444555553 466665553 33323334444555555555
Q ss_pred ccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCcc
Q 001036 793 MPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNG 872 (1180)
Q Consensus 793 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 872 (1180)
+.+|.++ ..-..+|...+++.+.+..+ + ..++..+|.+|++|+.+++..| ++.
T Consensus 187 l~~n~l~------------------------~I~~~aF~~~~L~~l~lp~~-l-~~I~~~aF~~~~~L~~l~l~~~-l~~ 239 (401)
T 4fdw_A 187 LSKTKIT------------------------KLPASTFVYAGIEEVLLPVT-L-KEIGSQAFLKTSQLKTIEIPEN-VST 239 (401)
T ss_dssp CTTSCCS------------------------EECTTTTTTCCCSEEECCTT-C-CEECTTTTTTCTTCCCEECCTT-CCE
T ss_pred cCCCcce------------------------EechhhEeecccCEEEeCCc-h-heehhhHhhCCCCCCEEecCCC-ccC
Confidence 5544444 33333333444444444433 2 2566668999999999999875 665
Q ss_pred ccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCc-----ccCCCCccCcccccccCCCCCCCCCCcc
Q 001036 873 SIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLH-----GLIPSCFDNTTLHESYNNNSSPDKPFKT 947 (1180)
Q Consensus 873 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1180)
+....|.+ .+|+.+.+ .+.++...+.+|.++++|+.+++.+|.+. ...+.+|.++
T Consensus 240 I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c------------------ 299 (401)
T 4fdw_A 240 IGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGC------------------ 299 (401)
T ss_dssp ECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTC------------------
T ss_pred cccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCC------------------
Confidence 66777877 78999988 45566666778889999999998888765 2333344433
Q ss_pred ccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccc
Q 001036 948 SFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTF 1027 (1180)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~ 1027 (1180)
++|+.++|. |.++..-..+|.++++|+.++|..| ++..-+.+|
T Consensus 300 -----------------------------------~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF 342 (401)
T 4fdw_A 300 -----------------------------------PKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF 342 (401)
T ss_dssp -----------------------------------TTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred -----------------------------------ccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence 367777777 4466555667888888888888554 666667778
Q ss_pred cCCCCCCEEECcCCcCcccCCccccCCC-CCCEEEcCCCcC
Q 001036 1028 SNLRHIESLDLSYNKLSGKIPRQLVDLN-TLAIFIVAYNNL 1067 (1180)
Q Consensus 1028 ~~l~~L~~L~Ls~N~l~g~ip~~l~~l~-~L~~l~ls~N~l 1067 (1180)
.++ +|+.+++++|.+....+..|.+++ .+..+.+..|.+
T Consensus 343 ~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 343 NNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 888 888888888887766666677664 566776665543
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.51 E-value=5.4e-13 Score=153.66 Aligned_cols=237 Identities=15% Similarity=0.177 Sum_probs=125.8
Q ss_pred CcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcc
Q 001036 756 QSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSI 835 (1180)
Q Consensus 756 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L 835 (1180)
.+|.+|++|+.+.+.++.. ..-...|.++++|+.+.+..+ ++.....+|.++..|+.+.+..+... .-...+....+
T Consensus 156 ~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l 232 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGV 232 (394)
T ss_dssp TTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCC
T ss_pred hhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCC
Confidence 4555555666665544322 123344555566666655544 33233445556666665555444322 11122333445
Q ss_pred cEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcC
Q 001036 836 KQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSD 915 (1180)
Q Consensus 836 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~ 915 (1180)
+.+.+.... ..+....|.++..++.+.+..+... .....|..+..++.+....+.+ ....|..+.+|+.+.+.+
T Consensus 233 ~~i~ip~~~--~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~ 306 (394)
T 4fs7_A 233 KNIIIPDSF--TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLD 306 (394)
T ss_dssp CEEEECTTC--CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECT
T ss_pred ceEEECCCc--eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---cccccccccccccccccc
Confidence 555544321 1344456777777777777766443 5556677777777776665543 234566677777776654
Q ss_pred CcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcc
Q 001036 916 NNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKL 995 (1180)
Q Consensus 916 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 995 (1180)
+ ++..-+.+|.+++ +|+.+++..+ +
T Consensus 307 ~-i~~I~~~aF~~c~-----------------------------------------------------~L~~i~lp~~-v 331 (394)
T 4fs7_A 307 S-VKFIGEEAFESCT-----------------------------------------------------SLVSIDLPYL-V 331 (394)
T ss_dssp T-CCEECTTTTTTCT-----------------------------------------------------TCCEECCCTT-C
T ss_pred c-cceechhhhcCCC-----------------------------------------------------CCCEEEeCCc-c
Confidence 3 4433334444332 4555666433 4
Q ss_pred cCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCE
Q 001036 996 VGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAI 1059 (1180)
Q Consensus 996 ~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~ 1059 (1180)
+..-..+|.++++|+.+++..| ++..-..+|.++.+|+.+++..+ ++ .+..+|.+.+.|+.
T Consensus 332 ~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 332 EEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW 392 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred cEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence 4333455666666666666655 55444556666666666666544 22 23445555555443
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.49 E-value=1.1e-12 Score=151.13 Aligned_cols=333 Identities=14% Similarity=0.157 Sum_probs=186.9
Q ss_pred cCChhhhhcCCcccEEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCCCcEEEccCCcCCccCCccc
Q 001036 606 EFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPSLVYFNISMNALDGSIPSSF 685 (1180)
Q Consensus 606 ~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~L~~L~ls~n~l~~~~p~~~ 685 (1180)
.++...|.+|++|+.+.+.++ ++.....+|..+++|+.+++.++ ++ .++...+..+++|+.+.+..+ +......+|
T Consensus 61 sIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp EECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred EhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceee
Confidence 455556677777777777543 55444566777777777777654 33 566666666677776666543 444555566
Q ss_pred cCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccccCCccCceeeccCCcccccCCCcCCCCCCCc
Q 001036 686 GNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRWLLLEGNHFVGEIPQSLSKCSSLK 765 (1180)
Q Consensus 686 ~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 765 (1180)
.++..++....... . .+....|.++.+|+.+.+..+. .......|.++++|+.+.+..+ +..+...+|.++..|+
T Consensus 137 ~~~~~~~~~~~~~~--~-~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~ 211 (394)
T 4fs7_A 137 KGCDFKEITIPEGV--T-VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLE 211 (394)
T ss_dssp TTCCCSEEECCTTC--C-EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred ecccccccccCccc--c-ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccc
Confidence 66654443332222 2 4555566677777777776543 3345566777777777777665 4445556677777777
Q ss_pred EEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcCCCcccEEEcCCccc
Q 001036 766 GLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNISGSLPSCFYPLSIKQVHLSKNML 845 (1180)
Q Consensus 766 ~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~ 845 (1180)
.+.+..+... +........+|+.+.+... .+......|.++..|+.+.+..+...
T Consensus 212 ~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~---------------------- 266 (394)
T 4fs7_A 212 NMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR---------------------- 266 (394)
T ss_dssp BCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE----------------------
T ss_pred eeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce----------------------
Confidence 7766655432 2233334566777766543 22233445666666776666555332
Q ss_pred ccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCC
Q 001036 846 HGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSC 925 (1180)
Q Consensus 846 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 925 (1180)
+....|.++..++.+....+.+ ....|.++.+|+.+.+..+ ++..-..+|.++++|+.+++.++ ++..-..+
T Consensus 267 ---i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a 338 (394)
T 4fs7_A 267 ---IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRS 338 (394)
T ss_dssp ---ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred ---eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHh
Confidence 2333455555555555544332 1234555556666555543 33333445556666666665433 44333344
Q ss_pred ccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccC
Q 001036 926 FDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGN 1005 (1180)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~ 1005 (1180)
|.+++ +|+.+++..| ++..-..+|.+
T Consensus 339 F~~c~-----------------------------------------------------~L~~i~lp~~-l~~I~~~aF~~ 364 (394)
T 4fs7_A 339 FRGCT-----------------------------------------------------SLSNINFPLS-LRKIGANAFQG 364 (394)
T ss_dssp TTTCT-----------------------------------------------------TCCEECCCTT-CCEECTTTBTT
T ss_pred ccCCC-----------------------------------------------------CCCEEEECcc-ccEehHHHhhC
Confidence 44333 4555555544 44334456777
Q ss_pred CCCCCEEeCccccccccccccccCCCCCCEE
Q 001036 1006 LTRIQTLNLSHNNLTGTIPLTFSNLRHIESL 1036 (1180)
Q Consensus 1006 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L 1036 (1180)
+++|+.+++..+ ++ .+...|.+.++|+.+
T Consensus 365 C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 365 CINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 777777777654 33 344567766666543
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=5e-16 Score=160.07 Aligned_cols=155 Identities=25% Similarity=0.290 Sum_probs=121.9
Q ss_pred ccCCCCCcEEECcCccCccccch------hhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCcc
Q 001036 854 FFNCSSLVTLDLSYNYLNGSIPD------WIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFD 927 (1180)
Q Consensus 854 ~~~~~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 927 (1180)
+.....++.++++.+.+++.+|. .+..+++|++|++++|++++ +| .+..+++|++|++++|+++. +|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhh
Confidence 44456777777888888777776 88999999999999999986 66 88888999999999998873 443332
Q ss_pred CcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCC
Q 001036 928 NTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLT 1007 (1180)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~ 1007 (1180)
. ++.|+.|+|++|++++ +| .++.++
T Consensus 91 ~-----------------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~ 115 (198)
T 1ds9_A 91 V-----------------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLV 115 (198)
T ss_dssp H-----------------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHHH
T ss_pred c-----------------------------------------------------CCcCCEEECcCCcCCc-CC-ccccCC
Confidence 2 3478899999999986 45 688888
Q ss_pred CCCEEeCcccccccccc-ccccCCCCCCEEECcCCcCcccCCcc----------ccCCCCCCEEEcCCCcCc
Q 001036 1008 RIQTLNLSHNNLTGTIP-LTFSNLRHIESLDLSYNKLSGKIPRQ----------LVDLNTLAIFIVAYNNLS 1068 (1180)
Q Consensus 1008 ~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~Ls~N~l~g~ip~~----------l~~l~~L~~l~ls~N~l~ 1068 (1180)
+|++|++++|++++..+ ..+..+++|+.|++++|++++.+|.. +..++.|+.|| +|.++
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 99999999999986443 57888999999999999998887764 77888888887 55554
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=7.9e-14 Score=140.43 Aligned_cols=66 Identities=18% Similarity=0.195 Sum_probs=36.7
Q ss_pred cccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCccc
Q 001036 853 TFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGL 921 (1180)
Q Consensus 853 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 921 (1180)
.+.++++|+.|++++|+++. +|......++|++|++++|.+++. ..+..+++|++|++++|++++.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~ 79 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRI 79 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEE
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccccc
Confidence 35566677777777777663 343222233666666666666543 3455555555555555555443
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=9.4e-14 Score=139.88 Aligned_cols=135 Identities=17% Similarity=0.177 Sum_probs=109.8
Q ss_pred hhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCC
Q 001036 877 WIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQG 956 (1180)
Q Consensus 877 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (1180)
.+.++++|+.|++++|+++. +|......++|++|++++|++++. ..|..
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~---------------------------- 62 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPL---------------------------- 62 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCC----------------------------
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--ccccc----------------------------
Confidence 45678899999999999984 455333344999999999999875 34433
Q ss_pred chhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccc--cccCCCCCC
Q 001036 957 SVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPL--TFSNLRHIE 1034 (1180)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~--~~~~l~~L~ 1034 (1180)
++.|+.|+|++|+|++..|..++.+++|++|+|++|+++ .+|. .++.+++|+
T Consensus 63 -------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~ 116 (176)
T 1a9n_A 63 -------------------------LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLT 116 (176)
T ss_dssp -------------------------CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCC
T ss_pred -------------------------CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCC
Confidence 337999999999999765565699999999999999996 5666 889999999
Q ss_pred EEECcCCcCcccCCcc----ccCCCCCCEEEcCCCcCcc
Q 001036 1035 SLDLSYNKLSGKIPRQ----LVDLNTLAIFIVAYNNLSG 1069 (1180)
Q Consensus 1035 ~L~Ls~N~l~g~ip~~----l~~l~~L~~l~ls~N~l~g 1069 (1180)
.|++++|+++ .+|.. +..++.|++||+++|....
T Consensus 117 ~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 117 YLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999999998 56664 8899999999999997763
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=5e-13 Score=133.32 Aligned_cols=90 Identities=22% Similarity=0.228 Sum_probs=83.7
Q ss_pred ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036 984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus 984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
.++.|+|++|+|++..|..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..|..|..+++|++|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 68899999999999889999999999999999999998888889999999999999999998878889999999999999
Q ss_pred CCcCcccCCC
Q 001036 1064 YNNLSGKIPE 1073 (1180)
Q Consensus 1064 ~N~l~g~ip~ 1073 (1180)
+|++++..+.
T Consensus 111 ~N~~~c~c~~ 120 (170)
T 3g39_A 111 NNPWDCACSD 120 (170)
T ss_dssp SSCBCTTBGG
T ss_pred CCCCCCCchh
Confidence 9999987763
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=4e-13 Score=133.97 Aligned_cols=110 Identities=24% Similarity=0.252 Sum_probs=100.7
Q ss_pred ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036 984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus 984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
..+.+|+++|+++ .+|..+. +.|++|+|++|+|++..|..|+++++|+.|||++|+|++..|..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3578999999999 5787664 789999999999999999999999999999999999998888889999999999999
Q ss_pred CCcCcccCCCcccccccCCccccCCCCCCCCCC
Q 001036 1064 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 1096 (1180)
Q Consensus 1064 ~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~ 1096 (1180)
+|+|++..|..+..+..+...++.+||+.|.|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999998887767888899999999999999985
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=9.3e-13 Score=131.73 Aligned_cols=108 Identities=21% Similarity=0.236 Sum_probs=77.9
Q ss_pred ceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCC
Q 001036 986 AGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYN 1065 (1180)
Q Consensus 986 ~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N 1065 (1180)
+.+|+++|+++ .+|..+. +.|++|+|++|+|++.+|..|+++++|+.|+|++|+|++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777775 5666554 67777777777777777777777777777777777777655556677777777777777
Q ss_pred cCcccCCCcccccccCCccccCCCCCCCCCC
Q 001036 1066 NLSGKIPEWTAQFATFNKSSYDGNPFLCGLP 1096 (1180)
Q Consensus 1066 ~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~ 1096 (1180)
+|++..|..+..+..+....+.+||+.|.|+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 7776555556666677777777777777764
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.38 E-value=5.5e-15 Score=152.25 Aligned_cols=139 Identities=22% Similarity=0.263 Sum_probs=121.7
Q ss_pred hhhcCCCCCEEecCCCccccCCCc------cccCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccc
Q 001036 877 WIDGLSQLSHLNLAHNNLEGEVPI------QLCRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFS 950 (1180)
Q Consensus 877 ~~~~l~~L~~L~L~~N~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 950 (1180)
.+.....++.++++++.+.|.+|. .+..+++|++|++++|++++ +| .+..
T Consensus 13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~---------------------- 68 (198)
T 1ds9_A 13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG---------------------- 68 (198)
T ss_dssp HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH----------------------
T ss_pred HHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc----------------------
Confidence 356778899999999999999887 89999999999999999987 44 4433
Q ss_pred cCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCC
Q 001036 951 ISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNL 1030 (1180)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l 1030 (1180)
++.|+.|++++|+++ .+|..+..+++|++|+|++|++++ +| .++.+
T Consensus 69 -------------------------------l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l 114 (198)
T 1ds9_A 69 -------------------------------MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKL 114 (198)
T ss_dssp -------------------------------HTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHH
T ss_pred -------------------------------CCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccC
Confidence 348999999999999 688888888999999999999997 55 68999
Q ss_pred CCCCEEECcCCcCcccCC-ccccCCCCCCEEEcCCCcCcccCCC
Q 001036 1031 RHIESLDLSYNKLSGKIP-RQLVDLNTLAIFIVAYNNLSGKIPE 1073 (1180)
Q Consensus 1031 ~~L~~L~Ls~N~l~g~ip-~~l~~l~~L~~l~ls~N~l~g~ip~ 1073 (1180)
++|+.|++++|++++..+ ..+..++.|++|++++|++++.+|.
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 999999999999996433 5789999999999999999988775
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=1.6e-12 Score=130.02 Aligned_cols=90 Identities=22% Similarity=0.236 Sum_probs=83.5
Q ss_pred ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036 984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus 984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
.|+.|+|++|+|++.+|..|+++++|++|+|++|+|++..+..|+++++|+.|||++|+|++..|..|..+++|++|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 68999999999999999999999999999999999998877788999999999999999997777779999999999999
Q ss_pred CCcCcccCCC
Q 001036 1064 YNNLSGKIPE 1073 (1180)
Q Consensus 1064 ~N~l~g~ip~ 1073 (1180)
+|++.+..+.
T Consensus 114 ~N~~~c~~~~ 123 (174)
T 2r9u_A 114 NNPWDCECRD 123 (174)
T ss_dssp SSCBCTTBGG
T ss_pred CCCccccccc
Confidence 9999976653
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.25 E-value=3.3e-10 Score=130.33 Aligned_cols=135 Identities=10% Similarity=0.176 Sum_probs=78.4
Q ss_pred cCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccccCCCCCCEEECcCCcCcccCCCCccC
Q 001036 849 LKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDN 928 (1180)
Q Consensus 849 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 928 (1180)
+...+|.++..|+.+.+.++..+ .....|.++++|+.+.+. +.++.....+|.++.+|+.+++..+ ++..-..+|.+
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 33446777777777777654432 445667777777777775 3454445566777777777777654 44444445544
Q ss_pred cccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccCCCCccccCCCC
Q 001036 929 TTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVGHIPPQIGNLTR 1008 (1180)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~ 1008 (1180)
++ +|+.+.+..+ ++..-..+|.++++
T Consensus 333 C~-----------------------------------------------------~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 333 CE-----------------------------------------------------QLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp CT-----------------------------------------------------TCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred CC-----------------------------------------------------CCCEEEECcc-cCEEhHhHhhCCCC
Confidence 33 5667777543 55344566888888
Q ss_pred CCEEeCccccccccccccccCCCCCCEEECcCCcC
Q 001036 1009 IQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKL 1043 (1180)
Q Consensus 1009 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l 1043 (1180)
|+.+++++|.... ..|....+|+.+.+..|.+
T Consensus 359 L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 359 LNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 8888888776542 4566677788887776654
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=1.1e-11 Score=140.38 Aligned_cols=112 Identities=17% Similarity=0.224 Sum_probs=89.0
Q ss_pred ccceEEccC-CcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEc
Q 001036 984 LLAGLDLSC-NKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV 1062 (1180)
Q Consensus 984 ~L~~LdLs~-N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~l 1062 (1180)
+|+.|+|++ |+|++..|..|+++++|+.|+|++|+|++.+|..|+++++|+.|||++|+|++..|..+..++ |+.|++
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence 789999996 999988888999999999999999999999999999999999999999999977666676666 999999
Q ss_pred CCCcCcccCC-CcccccccCCccccCCCCCCCCCC
Q 001036 1063 AYNNLSGKIP-EWTAQFATFNKSSYDGNPFLCGLP 1096 (1180)
Q Consensus 1063 s~N~l~g~ip-~~~~~~~~~~~~~~~~N~~lc~~~ 1096 (1180)
++|++.+..+ .++.++.......+..+...|..|
T Consensus 111 ~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~ 145 (347)
T 2ifg_A 111 SGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ 145 (347)
T ss_dssp CSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred eCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence 9999987554 122333222233344556666543
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.24 E-value=7.2e-10 Score=127.46 Aligned_cols=323 Identities=14% Similarity=0.148 Sum_probs=191.0
Q ss_pred CCcEEEccCCcCCccCCccccCcccCcEEEccCcc---cccccChhhhhcCCCCCEEEccCCcccccccccccCCccCce
Q 001036 666 SLVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNK---LTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRIFSLRNLRW 742 (1180)
Q Consensus 666 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~---l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 742 (1180)
.|+.+.+..+ ++.+...+|.++.+|+.+.+..|. ++ .|+...|.++.+|+.+.+..+ ++.....+|..+.+|+.
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 3555555432 444555566666666666665543 43 555666666666666665543 44444556666667777
Q ss_pred eeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCEEEccCCcc
Q 001036 743 LLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQILDISDNNI 822 (1180)
Q Consensus 743 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 822 (1180)
+.+..+ +..+....|.++.+|+.+.+.++ +...-..+|. ...|+.+.+..+-.. ....+|.++.+++......+..
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~ 217 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESY 217 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSS
T ss_pred ccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccceeccccccc
Confidence 766543 33344556667777777777554 2212223343 356777776554322 3445666777777766655443
Q ss_pred cccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCccccCCCccc
Q 001036 823 SGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNLEGEVPIQL 902 (1180)
Q Consensus 823 ~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 902 (1180)
.. +...+.. .+.. +......+.....+..+.+.. .++..-...|.++..|+.+.+..+... ....+|
T Consensus 218 ~~-~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF 284 (394)
T 4gt6_A 218 PA-IDNVLYE---------KSAN-GDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAF 284 (394)
T ss_dssp CB-SSSCEEE---------ECTT-SCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTT
T ss_pred cc-ccceeec---------cccc-ccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCccc
Confidence 31 1111000 0000 000000122334455555542 344455678999999999999876543 556789
Q ss_pred cCCCCCCEEECcCCcCcccCCCCccCcccccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhc
Q 001036 903 CRLNQLQLLDLSDNNLHGLIPSCFDNTTLHESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVL 982 (1180)
Q Consensus 903 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 982 (1180)
.++++|+.+++. +.++.....+|.++.
T Consensus 285 ~~c~~L~~i~l~-~~i~~I~~~aF~~c~---------------------------------------------------- 311 (394)
T 4gt6_A 285 MNCPALQDIEFS-SRITELPESVFAGCI---------------------------------------------------- 311 (394)
T ss_dssp TTCTTCCEEECC-TTCCEECTTTTTTCT----------------------------------------------------
T ss_pred ccccccccccCC-CcccccCceeecCCC----------------------------------------------------
Confidence 999999999996 456555556666544
Q ss_pred cccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEc
Q 001036 983 SLLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIV 1062 (1180)
Q Consensus 983 ~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~l 1062 (1180)
+|+.+++..+ ++..-..+|.++++|+.+.+..+ ++..-..+|.++++|+.+++.+|.... .++.....|+.+.+
T Consensus 312 -~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 312 -SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPV 385 (394)
T ss_dssp -TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----
T ss_pred -CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEe
Confidence 6888888764 55455678999999999999765 775566789999999999999987542 46777888888888
Q ss_pred CCCcC
Q 001036 1063 AYNNL 1067 (1180)
Q Consensus 1063 s~N~l 1067 (1180)
..|.+
T Consensus 386 ~~~~~ 390 (394)
T 4gt6_A 386 APGSI 390 (394)
T ss_dssp -----
T ss_pred CCCCE
Confidence 76654
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=1.9e-11 Score=138.26 Aligned_cols=109 Identities=16% Similarity=0.219 Sum_probs=97.7
Q ss_pred ceEEccCC-cccCCCCccccCCCCCCEEeCcc-ccccccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcC
Q 001036 986 AGLDLSCN-KLVGHIPPQIGNLTRIQTLNLSH-NNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVA 1063 (1180)
Q Consensus 986 ~~LdLs~N-~l~g~~p~~~~~l~~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls 1063 (1180)
..+|++++ +|+ .+|. +..+++|+.|+|++ |+|++..|..|+++++|+.|||++|+|++..|..|.++++|+.|||+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45799998 898 5888 99999999999996 99999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCcccccccCCccccCCCCCCCCCCC
Q 001036 1064 YNNLSGKIPEWTAQFATFNKSSYDGNPFLCGLPL 1097 (1180)
Q Consensus 1064 ~N~l~g~ip~~~~~~~~~~~~~~~~N~~lc~~~l 1097 (1180)
+|+|++.+|..+..+. +....+.+|++.|.|.+
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCAL 121 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCcc
Confidence 9999987766444443 78888999999999864
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.14 E-value=2.1e-12 Score=146.08 Aligned_cols=164 Identities=21% Similarity=0.228 Sum_probs=104.1
Q ss_pred CCCcEEECcCccCccccchhhhcC-----CCCCEEecCCCccccCCCcccc-CCCCCCEEECcCCcCcccCCCCccCccc
Q 001036 858 SSLVTLDLSYNYLNGSIPDWIDGL-----SQLSHLNLAHNNLEGEVPIQLC-RLNQLQLLDLSDNNLHGLIPSCFDNTTL 931 (1180)
Q Consensus 858 ~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 931 (1180)
++|+.|+|++|.++......+... ++|++|+|++|.++......+. .+++|+.|+|++|+++......+...
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~-- 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL-- 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH--
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH--
Confidence 466777777777765444444332 5677777777776543322222 34567778888777754322111100
Q ss_pred ccccCCCCCCCCCCccccccCCCCCchhhhhhhhhhhccccchhcccchhccccceEEccCCcccC----CCCccccCCC
Q 001036 932 HESYNNNSSPDKPFKTSFSISGPQGSVEKKILEIFEFTTKNIAYAYQGRVLSLLAGLDLSCNKLVG----HIPPQIGNLT 1007 (1180)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g----~~p~~~~~l~ 1007 (1180)
+ ....+.|+.|+|++|.|+. .++..+...+
T Consensus 150 ----------------------------------L------------~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~ 183 (372)
T 3un9_A 150 ----------------------------------L------------LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT 183 (372)
T ss_dssp ----------------------------------H------------HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCS
T ss_pred ----------------------------------H------------HhcCCccceeeCCCCCCChHHHHHHHHHHhcCC
Confidence 0 0012357788888888764 2344456778
Q ss_pred CCCEEeCcccccccc----ccccccCCCCCCEEECcCCcCccc----CCccccCCCCCCEEEcCCCcCcc
Q 001036 1008 RIQTLNLSHNNLTGT----IPLTFSNLRHIESLDLSYNKLSGK----IPRQLVDLNTLAIFIVAYNNLSG 1069 (1180)
Q Consensus 1008 ~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~l~ls~N~l~g 1069 (1180)
+|++|||++|.|+.. ++..+...++|+.|||++|.|+.. ++..+...+.|++||+++|+++.
T Consensus 184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 888888888888753 355667778888999999988753 44455567888999999998874
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.03 E-value=1.2e-11 Score=139.94 Aligned_cols=159 Identities=18% Similarity=0.144 Sum_probs=78.1
Q ss_pred CCCcEEEccCCcCCccCCccccC-----cccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccccccc-----
Q 001036 665 PSLVYFNISMNALDGSIPSSFGN-----VIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHIFSRI----- 734 (1180)
Q Consensus 665 ~~L~~L~ls~n~l~~~~p~~~~~-----l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~~~~~----- 734 (1180)
+.|+.|++++|.++......+.. ...|+.|+|++|.++..-...+...+.+|+.|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 34555555555554332222221 14555555555555432222333334455555555555543332222
Q ss_pred cCCccCceeeccCCccccc----CCCcCCCCCCCcEEECcCCcCCCC----CcccccCCCCCCeEEccCCcCCCC----C
Q 001036 735 FSLRNLRWLLLEGNHFVGE----IPQSLSKCSSLKGLYLNNNNLSGK----IPRWLGNLKGLQHIVMPKNHLEGP----I 802 (1180)
Q Consensus 735 ~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~ 802 (1180)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.+.+. ++..+...++|++|++++|.++.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 1234566666666655432 222334555666666666665432 233445555666666666666532 2
Q ss_pred CccccCCCCCCEEEccCCccc
Q 001036 803 PVEFCRLDSLQILDISDNNIS 823 (1180)
Q Consensus 803 ~~~~~~l~~L~~L~l~~n~l~ 823 (1180)
+..+...++|++|++++|.++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhCCCCCEEeccCCCCC
Confidence 223334566777777777665
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.97 E-value=4.6e-08 Score=111.83 Aligned_cols=303 Identities=12% Similarity=0.081 Sum_probs=163.2
Q ss_pred hhccCcccEEEcCCCcccccCChhhhhcCCcccEEEccCCcccCCCCCCCCCCCCccEEEccCCcccccCChhhhhcCCC
Q 001036 587 LYHQHELKEAELSHIKMIGEFPNWLLENNTKLEFLYLVNDSLAGPFRLPIHSHKRLRFLDVSNNNFQGHIPVEIGDILPS 666 (1180)
Q Consensus 587 l~~~~~L~~l~l~~~~~~~~~p~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~l~~ 666 (1180)
.....+++.+.+... ...+++..|.+|++|+.+.+.++ ++......|..+ +|+.+.+..+ ++ .++...+.. .+
T Consensus 42 ~~~~~~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~~ 114 (379)
T 4h09_A 42 YKDRDRISEVRVNSG--ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-TD 114 (379)
T ss_dssp GGGGGGCSEEEECTT--EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-CC
T ss_pred cccccCCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceecc-CC
Confidence 334444555555432 34566666777777777777543 444444555554 5666665543 33 455555553 46
Q ss_pred CcEEEccCCcCCccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEccCCcccccc------------cccc
Q 001036 667 LVYFNISMNALDGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLSNNSLKGHI------------FSRI 734 (1180)
Q Consensus 667 L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~~n~l~~~~------------~~~~ 734 (1180)
|+.+.+..+ ++.....+|.++ +++...+..+ ++ .+....+..+..++...+..+...... ...+
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY 190 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred cccccCCCc-cccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceeccc
Confidence 777777654 333344455444 4555544433 22 444445556666666666554322111 1112
Q ss_pred cCCccCceeeccCCcccccCCCcCCCCCCCcEEECcCCcCCCCCcccccCCCCCCeEEccCCcCCCCCCccccCCCCCCE
Q 001036 735 FSLRNLRWLLLEGNHFVGEIPQSLSKCSSLKGLYLNNNNLSGKIPRWLGNLKGLQHIVMPKNHLEGPIPVEFCRLDSLQI 814 (1180)
Q Consensus 735 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 814 (1180)
.....+....+.... .......+..+.+|+.+.+..+ +.......+.++..|+.+.+..+ ++..-..+|.++.+|+.
T Consensus 191 ~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~ 267 (379)
T 4h09_A 191 PAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT 267 (379)
T ss_dssp CTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred cccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence 222233333332221 1122233444444444444332 11122233444444444444433 22222333444444444
Q ss_pred EEccCCcccccCCCCcCCCcccEEEcCCcccccccCcccccCCCCCcEEECcCccCccccchhhhcCCCCCEEecCCCcc
Q 001036 815 LDISDNNISGSLPSCFYPLSIKQVHLSKNMLHGQLKEGTFFNCSSLVTLDLSYNYLNGSIPDWIDGLSQLSHLNLAHNNL 894 (1180)
Q Consensus 815 L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 894 (1180)
+ .+..+ + ..++..+|.+|++|+.+++.++.++.+.+..|.++.+|+.+.+..+ +
T Consensus 268 i-----------------------~l~~~-i-~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l 321 (379)
T 4h09_A 268 L-----------------------NFYAK-V-KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-L 321 (379)
T ss_dssp E-----------------------EECCC-C-SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-C
T ss_pred c-----------------------ccccc-c-eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-c
Confidence 4 44332 1 2455668889999999999888888777788999999999998755 6
Q ss_pred ccCCCccccCCCCCCEEECcCCcCcccCCCCccCcc
Q 001036 895 EGEVPIQLCRLNQLQLLDLSDNNLHGLIPSCFDNTT 930 (1180)
Q Consensus 895 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 930 (1180)
+..-..+|.++++|+.+.+..+ ++..-..+|.++.
T Consensus 322 ~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 322 KTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 6555678889999998888755 6655566777665
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.94 E-value=8.1e-08 Score=109.78 Aligned_cols=69 Identities=9% Similarity=0.115 Sum_probs=36.6
Q ss_pred ccceEEccCCcccCCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCcccCCccccCC
Q 001036 984 LLAGLDLSCNKLVGHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDL 1054 (1180)
Q Consensus 984 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l 1054 (1180)
+|+.+++.++.++..-+.+|.++.+|+.++|..+ ++.+-..+|.++++|+.+.+..+ ++-.-..+|.+.
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 4455555555554333445666666666666543 54344456666666666666544 443334445444
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.51 E-value=4.8e-08 Score=109.10 Aligned_cols=65 Identities=18% Similarity=0.314 Sum_probs=42.8
Q ss_pred CCCCCCEEeCcccccccccccccc---CCCCCCEEECcCCcCccc----CCccccCCCCCCEEEcCCCcCcc
Q 001036 1005 NLTRIQTLNLSHNNLTGTIPLTFS---NLRHIESLDLSYNKLSGK----IPRQLVDLNTLAIFIVAYNNLSG 1069 (1180)
Q Consensus 1005 ~l~~L~~L~Ls~N~l~g~~p~~~~---~l~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~l~ls~N~l~g 1069 (1180)
.+++|++|+|++|.++...+..+. .+++|+.|||+.|.|++. ++..+..++.|+.|++++|.++.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 466777777777777654443332 466778888888877764 33444456777888887777653
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.46 E-value=4.5e-08 Score=109.32 Aligned_cols=59 Identities=29% Similarity=0.429 Sum_probs=30.5
Q ss_pred CCCCcEEECcCccCccc----cchhhhcCCCCCEEecCCCccccCCCccccC-CCCCCEEECcCCc
Q 001036 857 CSSLVTLDLSYNYLNGS----IPDWIDGLSQLSHLNLAHNNLEGEVPIQLCR-LNQLQLLDLSDNN 917 (1180)
Q Consensus 857 ~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~Ls~N~ 917 (1180)
+++|+.|+|+.|.+++. ++..+..+++|+.|++++|.++...-..+.. + ...+++++++
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 45666666666666543 2233344566666666666655332222222 1 2445666554
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.22 E-value=5.8e-07 Score=94.72 Aligned_cols=78 Identities=23% Similarity=0.285 Sum_probs=45.8
Q ss_pred ccccceEEccCCcccC--CCCccccCCCCCCEEeCccccccccccccccCCC--CCCEEECcCCcCcccCCc-------c
Q 001036 982 LSLLAGLDLSCNKLVG--HIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLR--HIESLDLSYNKLSGKIPR-------Q 1050 (1180)
Q Consensus 982 l~~L~~LdLs~N~l~g--~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~--~L~~L~Ls~N~l~g~ip~-------~ 1050 (1180)
++.|+.|+||+|+|++ .+|..+..+++|+.||||+|+|++. +.+..++ +|+.|+|++|.+++.+|. .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4566666777776665 3445556666666666666666654 2233333 666666666666665552 2
Q ss_pred ccCCCCCCEEE
Q 001036 1051 LVDLNTLAIFI 1061 (1180)
Q Consensus 1051 l~~l~~L~~l~ 1061 (1180)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 44556665554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.22 E-value=2.6e-07 Score=92.90 Aligned_cols=69 Identities=13% Similarity=0.152 Sum_probs=31.4
Q ss_pred cccCCCCCcEEecCCC-cCCCC----ccccccCCCCCcEEEccCccccCccC---hhhccCCCCCCeEEccCCCCCc
Q 001036 106 GLSRLNNLKMLDLSGN-AFNNN----VLSSLARLSSLRSLYLSDNRLEGSID---VKELDSLRDLEELDIGGNKIDK 174 (1180)
Q Consensus 106 ~l~~l~~L~~L~Ls~~-~i~~~----lp~~l~~l~~L~~L~L~~~~~~~~~~---~~~l~~L~~L~~L~L~~~~l~~ 174 (1180)
.+...++|++|+|++| .+... +...+...++|++|+|++|.+..... ...+...+.|++|+|++|.+.+
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3445555666666655 55432 22333344555555555555432100 1123334455555555555443
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.22 E-value=1e-06 Score=88.50 Aligned_cols=71 Identities=18% Similarity=0.234 Sum_probs=43.2
Q ss_pred cccCCCCccEEeCCCC-cCCCcccccccccccCCCCccEEEcCCCcCCchhhHHh----hccCCCceeecCCcccc
Q 001036 202 EFDSFNNLEVLDMSGN-EIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSV----ARLSSLTSLHLSHNILQ 272 (1180)
Q Consensus 202 ~l~~l~~L~~L~Ls~~-~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~l----~~l~~L~~L~L~~~~~~ 272 (1180)
.+...++|++|+|++| .+.........+.+...++|++|+|++|.+.+.....+ ...+.|++|+|++|.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 3555677777777777 66654444444456666777777777777766443333 33355666666666554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.12 E-value=5.3e-07 Score=95.03 Aligned_cols=84 Identities=23% Similarity=0.313 Sum_probs=66.6
Q ss_pred EEccCCccc---CCCCccccCCCCCCEEeCccccccc--cccccccCCCCCCEEECcCCcCcccCCccccCCC--CCCEE
Q 001036 988 LDLSCNKLV---GHIPPQIGNLTRIQTLNLSHNNLTG--TIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLN--TLAIF 1060 (1180)
Q Consensus 988 LdLs~N~l~---g~~p~~~~~l~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~--~L~~l 1060 (1180)
++++.|+.. +.++....+++.|+.|+||+|+|++ .+|..++.+++|+.|||++|+|++. ..+..+. .|+.|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 677778433 2223333568899999999999998 5678888999999999999999975 3444444 89999
Q ss_pred EcCCCcCcccCCC
Q 001036 1061 IVAYNNLSGKIPE 1073 (1180)
Q Consensus 1061 ~ls~N~l~g~ip~ 1073 (1180)
++++|++++.+|.
T Consensus 226 ~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 226 WLDGNSLCDTFRD 238 (267)
T ss_dssp ECTTSTTGGGCSS
T ss_pred EccCCcCccccCc
Confidence 9999999998874
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.97 E-value=3.2e-06 Score=82.20 Aligned_cols=87 Identities=15% Similarity=0.274 Sum_probs=68.1
Q ss_pred CCCCEEEccCcccCCCchhcccccccCCCCCcEEecCCCc-CCCCccccccCC----CCCcEEEccCcc-ccCccChhhc
Q 001036 83 QQLESLDLSWNNIAGCAENEGLEGLSRLNNLKMLDLSGNA-FNNNVLSSLARL----SSLRSLYLSDNR-LEGSIDVKEL 156 (1180)
Q Consensus 83 ~~L~~L~Ls~~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~-i~~~lp~~l~~l----~~L~~L~L~~~~-~~~~~~~~~l 156 (1180)
..|++||+++|.++.. ++..+..+++|++|+|++|. +++.....++.+ ++|++|+|++|. ++ ......+
T Consensus 61 ~~L~~LDLs~~~Itd~----GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT-D~Gl~~L 135 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSI----GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT-DKGIIAL 135 (176)
T ss_dssp CCEEEEEEESCCCCGG----GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC-HHHHHHG
T ss_pred ceEeEEeCcCCCccHH----HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC-HHHHHHH
Confidence 4689999999986543 44678899999999999995 887777777775 479999999996 54 3344567
Q ss_pred cCCCCCCeEEccCCC-CCc
Q 001036 157 DSLRDLEELDIGGNK-IDK 174 (1180)
Q Consensus 157 ~~L~~L~~L~L~~~~-l~~ 174 (1180)
.++++|++|++++|. +++
T Consensus 136 ~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCEEECCCCCCCCc
Confidence 889999999999985 444
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.74 E-value=1.7e-05 Score=77.04 Aligned_cols=35 Identities=11% Similarity=0.146 Sum_probs=15.7
Q ss_pred CccEEEcCCCcCCchhhHHhhccCCCceeecCCcc
Q 001036 236 KLKKLDLRGNLCNNSILSSVARLSSLTSLHLSHNI 270 (1180)
Q Consensus 236 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 270 (1180)
+|++|++++|.+++.....+..+++|++|+|++|.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 34444444444444444444444444444444443
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.27 E-value=0.00027 Score=69.98 Aligned_cols=48 Identities=10% Similarity=0.157 Sum_probs=25.0
Q ss_pred CCCCccEEeCCCC-cCCCcccccccccccCCCCccEEEcCCCcCCchhh
Q 001036 205 SFNNLEVLDMSGN-EIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSIL 252 (1180)
Q Consensus 205 ~l~~L~~L~Ls~~-~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~ 252 (1180)
+-+.|++|+|+++ .+.........+.+...+.|++|+|++|.+.+...
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga 87 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEA 87 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHH
Confidence 3455666666653 44443333334445555566666666665554433
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.85 E-value=0.0014 Score=64.87 Aligned_cols=67 Identities=13% Similarity=0.234 Sum_probs=45.3
Q ss_pred cccCCCCccEEeCCCCcCCCcccccccccccCCCCccEEEcCCCcCCchhhHHhhc----cCCCceeecCC
Q 001036 202 EFDSFNNLEVLDMSGNEIDNLVVPQGLERLSRLSKLKKLDLRGNLCNNSILSSVAR----LSSLTSLHLSH 268 (1180)
Q Consensus 202 ~l~~l~~L~~L~Ls~~~l~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~l~~----l~~L~~L~L~~ 268 (1180)
.+..-+.|+.|+|++|.+.+.......+.|...+.|++|+|++|.+.+.....+.. -+.|++|+|++
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 34455678888888888776655555666777888888888888887765555443 34566666554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.53 E-value=0.0034 Score=58.11 Aligned_cols=56 Identities=23% Similarity=0.254 Sum_probs=34.9
Q ss_pred eEEccCCccc-CCCCccccCCCCCCEEeCccccccccccccccCCCCCCEEECcCCcCc
Q 001036 987 GLDLSCNKLV-GHIPPQIGNLTRIQTLNLSHNNLTGTIPLTFSNLRHIESLDLSYNKLS 1044 (1180)
Q Consensus 987 ~LdLs~N~l~-g~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~ 1044 (1180)
.+|.+++.++ ..+|..+. .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5677777775 34554332 24666777777777555556666666666666666654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.36 E-value=0.0054 Score=56.72 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=44.5
Q ss_pred CEEeCcccccc-ccccccccCCCCCCEEECcCCcCcccCCccccCCCCCCEEEcCCCcCcc
Q 001036 1010 QTLNLSHNNLT-GTIPLTFSNLRHIESLDLSYNKLSGKIPRQLVDLNTLAIFIVAYNNLSG 1069 (1180)
Q Consensus 1010 ~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g 1069 (1180)
..+|.+++.++ ..+|..+. .+|+.|||++|+|+..-+..|..++.|+.|+|++|.+..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 47889999997 46776554 468899999999997666777888888888777776654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=32.61 E-value=53 Score=27.92 Aligned_cols=14 Identities=36% Similarity=0.624 Sum_probs=6.0
Q ss_pred CcCCCCCCCcEEEC
Q 001036 756 QSLSKCSSLKGLYL 769 (1180)
Q Consensus 756 ~~~~~l~~L~~L~l 769 (1180)
.+|.+|.+|+.+.+
T Consensus 37 ~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 37 GMFSGCTALEKLIL 50 (100)
T ss_dssp TSSTTCTTCCCEEE
T ss_pred HHHhccCCccEEEE
Confidence 34444444444444
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.51 E-value=75 Score=26.96 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=19.7
Q ss_pred CccCCccccCcccCcEEEccCcccccccChhhhhcCCCCCEEEcc
Q 001036 678 DGSIPSSFGNVIFLQFLDLSNNKLTGEIPDHLAMCCVNLEFLSLS 722 (1180)
Q Consensus 678 ~~~~p~~~~~l~~L~~L~l~~n~l~~~ip~~~~~~~~~L~~L~L~ 722 (1180)
+.+...+|.+|++|+.+.+-.+ ++ .|.+..|.+|.+|+.+.+.
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEEC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEc
Confidence 3334445555555555555443 22 3444444444444444443
No 167
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=20.17 E-value=48 Score=22.42 Aligned_cols=7 Identities=0% Similarity=0.263 Sum_probs=2.6
Q ss_pred hhHHHHH
Q 001036 1129 FTISYVI 1135 (1180)
Q Consensus 1129 ~~~~~~~ 1135 (1180)
.+++.++
T Consensus 16 iVvG~v~ 22 (38)
T 2k1k_A 16 VIFGLLL 22 (38)
T ss_dssp HHHHHHH
T ss_pred eehHHHH
Confidence 3333333
Done!