Your job contains 1 sequence.
>001037
MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV
DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFD
NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP
PKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL
RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILE
EYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII
YDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLA
GKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQET
VHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIAN
LSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYP
VQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEAG
SSGSSSNSRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQ
QSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQ
MDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLN
CMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQI
VPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFY
GFSHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFTGPLSTSVSTPSPRQTTVGQS
KRHKIINEMEPGPSPPQKPPQRGSVPVSEDSRIRVQIPQKESRLGSGSGSSREQSQPDDS
PHPGELVICKKKRKDREKSVVKPRSVSGPVSPPSLGRNIKSPGLGLVPKDMRHTQQTTHQ
HGWANQPAQPANGGSGAVGWANPVKRLRTDAGKRRPSQL
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001037
(1179 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2062999 - symbol:BRM "AT2G46020" species:3702 ... 3127 0. 2
UNIPROTKB|K7GT64 - symbol:LOC100622433 "Uncharacterized p... 773 2.2e-96 4
TAIR|locus:2062840 - symbol:SYD "SPLAYED" species:3702 "A... 831 5.2e-93 3
UNIPROTKB|F1S594 - symbol:LOC100622433 "Uncharacterized p... 778 8.3e-86 3
UNIPROTKB|P51532 - symbol:SMARCA4 "Transcription activato... 773 2.0e-85 4
POMBASE|SPAC1250.01 - symbol:snf21 "ATP-dependent DNA hel... 763 1.6e-84 3
UNIPROTKB|Q9HBD4 - symbol:SMARCA4 "SMARCA4 isoform 2" spe... 773 2.2e-84 4
UNIPROTKB|D4AA07 - symbol:Smarca4 "Transcription activato... 773 2.6e-83 3
ASPGD|ASPL0000042729 - symbol:AN2278 species:162425 "Emer... 753 3.8e-83 4
CGD|CAL0003962 - symbol:orf19.239 species:5476 "Candida a... 823 1.4e-82 2
FB|FBgn0000212 - symbol:brm "brahma" species:7227 "Drosop... 815 3.0e-81 2
POMBASE|SPCC1620.14c - symbol:snf22 "ATP-dependent DNA he... 753 5.4e-81 2
DICTYBASE|DDB_G0285205 - symbol:snf2a "SNF2-related prote... 744 5.3e-78 3
UNIPROTKB|A7Z019 - symbol:SMARCA4 "Transcription activato... 778 1.2e-77 3
SGD|S000001388 - symbol:STH1 "ATPase component of the RSC... 787 3.4e-77 2
UNIPROTKB|F1M6Y4 - symbol:Smarca4 "Transcription activato... 783 4.8e-77 2
MGI|MGI:88192 - symbol:Smarca4 "SWI/SNF related, matrix a... 778 8.7e-77 2
RGD|621728 - symbol:Smarca4 "SWI/SNF related, matrix asso... 778 8.7e-77 2
ZFIN|ZDB-GENE-030131-5964 - symbol:smarca2 "SWI/SNF relat... 784 1.1e-76 3
UNIPROTKB|G3V790 - symbol:Smarca4 "SWI/SNF related, matri... 778 2.3e-76 2
UNIPROTKB|E2RJ89 - symbol:SMARCA4 "Uncharacterized protei... 778 3.7e-76 2
UNIPROTKB|P51531 - symbol:SMARCA2 "Probable global transc... 775 8.6e-76 2
ZFIN|ZDB-GENE-030605-1 - symbol:smarca4 "SWI/SNF related,... 773 8.8e-76 2
WB|WBGene00004204 - symbol:swsn-4 species:6239 "Caenorhab... 784 9.5e-76 2
DICTYBASE|DDB_G0271052 - symbol:snf2b "SNF2-related prote... 781 1.4e-75 3
UNIPROTKB|J9P5P2 - symbol:SMARCA2 "Uncharacterized protei... 775 2.1e-75 2
UNIPROTKB|E9PTG1 - symbol:Smarca2 "Protein Smarca2" speci... 775 2.3e-75 2
WB|WBGene00016868 - symbol:C52B9.8 species:6239 "Caenorha... 766 2.9e-75 2
UNIPROTKB|A5PKK5 - symbol:SMARCA2 "SMARCA2 protein" speci... 775 3.2e-75 2
UNIPROTKB|E2RKP4 - symbol:SMARCA2 "Uncharacterized protei... 775 3.2e-75 2
UNIPROTKB|F1SJG5 - symbol:SMARCA2 "Uncharacterized protei... 775 3.2e-75 2
UNIPROTKB|F1MJ46 - symbol:SMARCA4 "Transcription activato... 760 3.7e-75 3
UNIPROTKB|E1C2F7 - symbol:E1C2F7 "Uncharacterized protein... 782 3.9e-75 2
MGI|MGI:99603 - symbol:Smarca2 "SWI/SNF related, matrix a... 775 7.3e-75 2
CGD|CAL0005444 - symbol:SNF2 species:5476 "Candida albica... 781 9.7e-75 1
UNIPROTKB|Q5AM49 - symbol:SNF2 "Putative uncharacterized ... 781 9.7e-75 1
RGD|1302988 - symbol:Smarca2 "SWI/SNF related, matrix ass... 767 2.5e-74 2
UNIPROTKB|D4A4J2 - symbol:Smarca2 "Protein Smarca2" speci... 775 3.6e-74 1
SGD|S000005816 - symbol:SNF2 "Catalytic subunit of the SW... 745 5.3e-71 3
SGD|S000005831 - symbol:ISW2 "ATP-dependent DNA transloca... 459 1.9e-67 2
CGD|CAL0005422 - symbol:ISW2 species:5476 "Candida albica... 691 1.5e-66 2
UNIPROTKB|Q5A310 - symbol:ISW2 "Putative uncharacterized ... 691 1.5e-66 2
GENEDB_PFALCIPARUM|PF11_0053 - symbol:PF11_0053 "PfSNF2L"... 440 8.8e-65 4
UNIPROTKB|Q8IIW0 - symbol:PF11_0053 "PfSNF2L" species:363... 440 8.8e-65 4
UNIPROTKB|E1BCV0 - symbol:HELLS "Uncharacterized protein"... 405 6.5e-63 2
UNIPROTKB|F1SC64 - symbol:HELLS "Uncharacterized protein"... 398 1.1e-62 2
UNIPROTKB|Q9NRZ9 - symbol:HELLS "Lymphoid-specific helica... 395 2.9e-62 2
UNIPROTKB|E2QW28 - symbol:HELLS "Uncharacterized protein"... 400 3.5e-62 2
MGI|MGI:106209 - symbol:Hells "helicase, lymphoid specifi... 398 2.2e-61 2
UNIPROTKB|F6TQG2 - symbol:SMARCA1 "Probable global transc... 662 2.9e-61 3
DICTYBASE|DDB_G0284171 - symbol:DDB_G0284171 "CHR group p... 478 3.2e-61 4
UNIPROTKB|P28370 - symbol:SMARCA1 "Probable global transc... 662 5.5e-61 3
UNIPROTKB|F1P5V4 - symbol:HELLS "Uncharacterized protein"... 376 8.9e-61 2
UNIPROTKB|F1RTI9 - symbol:SMARCA1 "Uncharacterized protei... 659 1.8e-60 3
UNIPROTKB|K7GMM0 - symbol:SMARCA1 "Uncharacterized protei... 658 1.9e-60 3
UNIPROTKB|K7GLQ2 - symbol:SMARCA1 "Uncharacterized protei... 658 2.5e-60 3
RGD|1561046 - symbol:Smarca1 "SWI/SNF related, matrix ass... 651 4.2e-60 2
TAIR|locus:2173644 - symbol:CHR1 "chromatin remodeling 1"... 623 5.4e-60 1
UNIPROTKB|B6ZLK2 - symbol:CHD1 "Chromodomain-helicase-DNA... 467 9.1e-59 3
RGD|1309820 - symbol:Hells "helicase, lymphoid specific" ... 383 6.7e-58 2
UNIPROTKB|Q9ULG1 - symbol:INO80 "DNA helicase INO80" spec... 349 2.2e-57 2
UNIPROTKB|F1PKX5 - symbol:INO80 "Uncharacterized protein"... 348 2.9e-57 2
RGD|1306794 - symbol:Chd1 "chromodomain helicase DNA bind... 457 3.4e-57 2
MGI|MGI:88393 - symbol:Chd1 "chromodomain helicase DNA bi... 467 5.3e-57 3
UNIPROTKB|J9P6Y8 - symbol:CHD1 "Uncharacterized protein" ... 471 7.8e-57 3
UNIPROTKB|D4AD08 - symbol:Chd2 "Chromodomain helicase DNA... 446 1.2e-56 3
UNIPROTKB|F1MGF2 - symbol:CHD1 "Uncharacterized protein" ... 472 1.3e-56 3
RGD|1310969 - symbol:Ino80 "INO80 homolog (S. cerevisiae)... 352 1.6e-56 3
UNIPROTKB|E2QUI5 - symbol:CHD1 "Uncharacterized protein" ... 471 1.7e-56 3
UNIPROTKB|E1C1A9 - symbol:CHD2 "Uncharacterized protein" ... 450 2.3e-56 3
ZFIN|ZDB-GENE-041014-72 - symbol:ino80 "INO80 homolog (S.... 340 2.8e-56 2
UNIPROTKB|O14646 - symbol:CHD1 "Chromodomain-helicase-DNA... 471 4.6e-56 4
UNIPROTKB|E1BAN8 - symbol:INO80 "Uncharacterized protein"... 348 5.7e-56 3
UNIPROTKB|F1SSV0 - symbol:INO80 "Uncharacterized protein"... 348 5.7e-56 3
MGI|MGI:1915392 - symbol:Ino80 "INO80 homolog (S. cerevis... 346 7.3e-56 3
FB|FBgn0086613 - symbol:Ino80 "Ino80" species:7227 "Droso... 355 7.3e-56 2
FB|FBgn0250786 - symbol:Chd1 "Chromodomain-helicase-DNA-b... 467 9.2e-56 3
ASPGD|ASPL0000047400 - symbol:AN2285 species:162425 "Emer... 343 1.2e-55 2
UNIPROTKB|O14647 - symbol:CHD2 "Chromodomain-helicase-DNA... 442 1.4e-55 3
UNIPROTKB|I3LRQ2 - symbol:CHD2 "Uncharacterized protein" ... 441 2.8e-55 2
UNIPROTKB|J9PA90 - symbol:CHD2 "Uncharacterized protein" ... 442 2.9e-55 3
WB|WBGene00010369 - symbol:chd-1 species:6239 "Caenorhabd... 446 4.4e-55 4
UNIPROTKB|F1NYY9 - symbol:INO80 "Uncharacterized protein"... 342 5.3e-55 3
UNIPROTKB|I3LQZ8 - symbol:CHD2 "Uncharacterized protein" ... 442 8.8e-55 3
UNIPROTKB|G3MXX3 - symbol:CHD2 "Uncharacterized protein" ... 443 8.9e-55 3
UNIPROTKB|F1SA77 - symbol:CHD2 "Uncharacterized protein" ... 442 1.2e-54 3
UNIPROTKB|J9NX79 - symbol:CHD2 "Uncharacterized protein" ... 442 1.4e-54 3
UNIPROTKB|J9NSS6 - symbol:CHD2 "Uncharacterized protein" ... 442 1.7e-54 3
UNIPROTKB|E2R5Z7 - symbol:CHD2 "Uncharacterized protein" ... 442 1.9e-54 3
UNIPROTKB|F1RN66 - symbol:CHD1 "Uncharacterized protein" ... 448 5.5e-54 3
UNIPROTKB|I3L6N4 - symbol:CHD1 "Uncharacterized protein" ... 448 5.6e-54 3
UNIPROTKB|I3LIS2 - symbol:CHD1 "Uncharacterized protein" ... 448 5.6e-54 3
ZFIN|ZDB-GENE-030131-9923 - symbol:hells "helicase, lymph... 353 6.9e-54 2
CGD|CAL0000831 - symbol:orf19.1734 species:5476 "Candida ... 331 1.1e-53 2
ASPGD|ASPL0000056677 - symbol:AN1024 species:162425 "Emer... 332 2.5e-53 2
SGD|S000003118 - symbol:INO80 "ATPase and nucleosome spac... 326 2.9e-53 2
ZFIN|ZDB-GENE-050419-256 - symbol:chd2 "chromodomain heli... 438 4.5e-53 3
UNIPROTKB|F1NP27 - symbol:CHD1 "Chromodomain-helicase-DNA... 467 2.7e-52 3
UNIPROTKB|F1N8K8 - symbol:CHD1 "Chromodomain-helicase-DNA... 467 2.7e-52 3
POMBASE|SPAC1783.05 - symbol:hrp1 "ATP-dependent DNA heli... 402 8.8e-52 3
WARNING: Descriptions of 452 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2062999 [details] [associations]
symbol:BRM "AT2G46020" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010199 "organ boundary specification between
lateral organs and the meristem" evidence=IGI] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=NAS;TAS] [GO:0040029
"regulation of gene expression, epigenetic" evidence=RCA;IMP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00951
GO:GO:0005829 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0004386
EMBL:AC005397 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 EMBL:AC004665
EMBL:AJ703891 IPI:IPI00529654 IPI:IPI00541940 PIR:G84897
RefSeq:NP_182126.2 RefSeq:NP_973695.1 UniGene:At.48598
ProteinModelPortal:Q6EVK6 SMR:Q6EVK6 IntAct:Q6EVK6 STRING:Q6EVK6
PaxDb:Q6EVK6 PRIDE:Q6EVK6 EnsemblPlants:AT2G46020.2 GeneID:819210
KEGG:ath:AT2G46020 TAIR:At2g46020 HOGENOM:HOG000029719
InParanoid:Q6EVK6 KO:K11647 OMA:EMNAPKE PhylomeDB:Q6EVK6
ProtClustDB:CLSN2681222 ArrayExpress:Q6EVK6 Genevestigator:Q6EVK6
GO:GO:0010199 GO:GO:0040029 Uniprot:Q6EVK6
Length = 2193
Score = 3127 (1105.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 615/830 (74%), Positives = 685/830 (82%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W+SELH WLPSVSCIYYVG KDQRS+LFSQEV A+KFNVLVTTYEFIMYDRSKLSKVDWK
Sbjct: 1045 WKSELHTWLPSVSCIYYVGTKDQRSKLFSQEVCAMKFNVLVTTYEFIMYDRSKLSKVDWK 1104
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQND P+VFDNRK
Sbjct: 1105 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPDVFDNRK 1164
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
AFHDWF+QPFQKEGP HN +DDWLETEKKVI+IHRLHQILEPFMLRRRVEDVEGSLP KV
Sbjct: 1165 AFHDWFAQPFQKEGPAHNIEDDWLETEKKVIVIHRLHQILEPFMLRRRVEDVEGSLPAKV 1224
Query: 184 SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 243
S+VLRCRMSAIQSA+YDWIKATGTLRVDP+DEK R QKNPIYQAK+Y+TLNNRCMELRK
Sbjct: 1225 SVVLRCRMSAIQSAVYDWIKATGTLRVDPDDEKLRAQKNPIYQAKIYRTLNNRCMELRKA 1284
Query: 244 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL 303
CNHPLLNYPYF+D SKDFLV+SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL
Sbjct: 1285 CNHPLLNYPYFNDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL 1344
Query: 304 QWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP 363
QWR+LVYRRIDGTTSLEDRESAIVDFN D+DCFIFLLSIRAAGRGLNLQ+ADTV+IYDP
Sbjct: 1345 QWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDP 1404
Query: 364 DPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKD 423
DPNPKNEEQAVARAHRIGQ REVKVIYMEAVV+K+SSHQKEDELRSGG+VDLEDD+AGKD
Sbjct: 1405 DPNPKNEEQAVARAHRIGQTREVKVIYMEAVVEKLSSHQKEDELRSGGSVDLEDDMAGKD 1464
Query: 424 RYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHD 483
RYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHD
Sbjct: 1465 RYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHD 1524
Query: 484 VPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSK 543
VPSL EVNRMIARSE+EVELFDQMDEEF W EEMT ++QVPKWLRAST+EVNAT+A+LSK
Sbjct: 1525 VPSLHEVNRMIARSEEEVELFDQMDEEFDWTEEMTNHEQVPKWLRASTREVNATVADLSK 1584
Query: 544 KPSKNILFGSNIGVDSGEIETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERNGYPVQ 602
KPSKN+L SN+ V G ERKRG PK KK NYKE++D+I YSE SS+ERN
Sbjct: 1585 KPSKNMLSSSNLIVQPGGPGGERKRGRPKSKKI-NYKEIEDDIAGYSEESSEERNIDSGN 1643
Query: 603 XXXXXXXXXXXXXYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEAXXX 662
+GA+G +NK + + + PVC GYDY S + + N ++A
Sbjct: 1644 EEEGDIRQFDDDELTGALGDHQTNKGEFDGENPVC--GYDYPPGSGSYKKNPPRDDAGSS 1701
Query: 663 XXXXXXRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQS 722
R ++ SPVS QKFGSLSAL+ RPGS+SKR+ D+LEEGEIA SGDSH+D Q+S
Sbjct: 1702 GSSPESHRSKEMASPVSSQKFGSLSALDTRPGSVSKRLLDDLEEGEIAASGDSHIDLQRS 1761
Query: 723 GSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMD 782
GSW HDRDEG++EQVLQP IKRKRSIR+RPR T ER + ++ P + P Q+D
Sbjct: 1762 GSWAHDRDEGDEEQVLQPTIKRKRSIRLRPRQTAERVDG---SEMPAAQ------PLQVD 1812
Query: 783 NKYPAQLRT--DTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKS 830
Y ++LRT D+ +S+S +S P+ K S+ ++PKS
Sbjct: 1813 RSYRSKLRTVVDSHSSRQDQSDSSSRLRSVPAKKVAST--SKLHVSSPKS 1860
Score = 975 (348.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 217/412 (52%), Positives = 269/412 (65%)
Query: 778 PFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASL-KT 836
P Q+D Y ++LRT + S+S R DQS+ SS+ R ++P++K+A+ K S K+
Sbjct: 1808 PLQVDRSYRSKLRTVVD------SHSSRQDQSDSSSRLR-SVPAKKVASTSKLHVSSPKS 1860
Query: 837 GRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKE 896
GRLN ED A+ +E+WDG + SSN A+MS +IQ+RCK VISKLQRRI+KE
Sbjct: 1861 GRLNATQLTVEDNAEASRETWDG--TSPISSSNAGARMSHIIQKRCKIVISKLQRRIDKE 1918
Query: 897 GHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 956
G QIVP+LT+LWKRI+ +GY +G NN+L+LR+ID RV+RLEY GVMEL SDVQ ML+GA
Sbjct: 1919 GQQIVPMLTNLWKRIQ-NGYAAGGVNNLLELREIDHRVERLEYAGVMELASDVQLMLRGA 1977
Query: 957 MQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFTGPLSTSVSTPSPRQTT 1016
MQFYGFSHEVRSEA+KVH+LFFDLLK++FPDTDFREAR+ALSF+G T VSTP+PR
Sbjct: 1978 MQFYGFSHEVRSEAKKVHNLFFDLLKMSFPDTDFREARNALSFSGSAPTLVSTPTPRGAG 2037
Query: 1017 VGQSKRHKIINEMEXXXXXXXXXXXXXXVPVSEDSRIRVQIPQKXXXXXXXXXXXXXXXX 1076
+ Q KR K++NE E E+SRIRVQIPQK
Sbjct: 2038 ISQGKRQKLVNEPETEPSSPQRSQQR------ENSRIRVQIPQKETKLGGTTSHT----- 2086
Query: 1077 PDDSP---HPGELVICKKKRKDREKXXXXXXXXXXXXXXX----XLGRNIKSPGLGLVPK 1129
D+SP HPGELVICKKKRKDREK +GR ++SP G VP+
Sbjct: 2087 -DESPILAHPGELVICKKKRKDREKSGPKTRTGGSSSPVSPPPAMIGRGLRSPVSGGVPR 2145
Query: 1130 DMRHTQQTTHQHGWANQPAQPANGGSG--AVGWANPVKRLRTDAGKRRPSQL 1179
+ R QQ W NQP P N G+ +VGWANPVKRLRTD+GKRRPS L
Sbjct: 2146 ETRLAQQQR----WPNQPTHPNNSGAAGDSVGWANPVKRLRTDSGKRRPSHL 2193
Score = 50 (22.7 bits), Expect = 1.5e-98, Sum P(2) = 1.5e-98
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 158 RLHQILEPFMLRRRVEDVEGSLPPKV 183
+LH + + RR++ EGSLPP++
Sbjct: 468 QLHVLKAQILAFRRLKKGEGSLPPEL 493
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 773 (277.2 bits), Expect = 2.2e-96, Sum P(4) = 2.2e-96
Identities = 178/418 (42%), Positives = 241/418 (57%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W E KW PSV + Y G+ R R F ++ + KFNVL+TTYE+I+ D+ L+K+
Sbjct: 148 LSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVPQLRSGKFNVLLTTYEYIIKDKHILAKI 206
Query: 61 DWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE RMK+ L + L+ Y RRLLLTGTPLQN P +F
Sbjct: 207 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIF 266
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE L
Sbjct: 267 KSCSTFEQWFNAPFAMTG--EKVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVEAQL 321
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M+
Sbjct: 322 PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGT-------KTLMNTIMQ 374
Query: 240 LRKTCNHPLLNYPYFSDLSKDF-----------LVKSCGKLWILDRILIKLQRTGHRVLL 288
LRK CNHP + S+ L ++ GK +LDRIL KL+ T H+VLL
Sbjct: 375 LRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLL 434
Query: 289 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348
F MT L+ I+E+Y +R Y R+DGTT EDR + FN S+ FIFLLS RA G
Sbjct: 435 FCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGL 494
Query: 349 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK 403
GLNLQSADTVII+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 495 GLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK 552
Score = 89 (36.4 bits), Expect = 2.2e-96, Sum P(4) = 2.2e-96
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 439 QYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVH 482
+YK+++ +VI AG FDQ+++ ERR L+ +L EE+ E+ H
Sbjct: 552 KYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ-DESRH 594
Score = 84 (34.6 bits), Expect = 2.2e-96, Sum P(4) = 2.2e-96
Identities = 34/127 (26%), Positives = 63/127 (49%)
Query: 483 DVPSLQEVNRMIARSEDEVELFDQMD-----EEFGWIEEMTRY---DQVPKWLRASTKEV 534
+VP + VN+MIAR E+E +LF +MD EE + R D++P W+ K+
Sbjct: 628 EVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWI---IKD- 683
Query: 535 NATIANLSKKPSKNILFGSNIG----VDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSE 590
+A + L+ + + +FG VD + TE K+ K + +E+++E+ +
Sbjct: 684 DAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTE-KQWLKAIEEGTLEEIEEEVRQKKS 742
Query: 591 ASSDERN 597
+ +R+
Sbjct: 743 SRKRKRD 749
Score = 62 (26.9 bits), Expect = 2.2e-96, Sum P(4) = 2.2e-96
Identities = 17/83 (20%), Positives = 36/83 (43%)
Query: 878 IQRRCKNVISK-LQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR 936
+ ++ K ++ ++ + G Q+ + L R E Y + D +KI +R+
Sbjct: 791 LTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPV-DFKKIKERIRN 849
Query: 937 LEYNGVMELVSDVQFMLKGAMQF 959
+Y + +L DV + + A F
Sbjct: 850 HKYRSLNDLEKDVMLLCQNAQTF 872
Score = 54 (24.1 bits), Expect = 3.0e-93, Sum P(4) = 3.0e-93
Identities = 20/84 (23%), Positives = 39/84 (46%)
Query: 698 KRMPDELEEGEIAVSGDSH---MDHQQS---GSWTHDRDEGEDEQVLQPKIKRKRSIRVR 751
+R+ E EE ++ G H +D+ S W +EG E++ + ++++K+S R R
Sbjct: 688 ERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEI-EEEVRQKKSSRKR 746
Query: 752 PRHTVERPEERSCTDTPLHRGDSS 775
R + P + + + D S
Sbjct: 747 KRDSDAGPSTPTTSTRSRDKDDES 770
Score = 45 (20.9 bits), Expect = 4.4e-05, Sum P(4) = 4.4e-05
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESV---LARDLDRY 87
D +S+VD ++II + Q + D V LAR L Y
Sbjct: 27 DSDDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSY 64
>TAIR|locus:2062840 [details] [associations]
symbol:SYD "SPLAYED" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009908 "flower development"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=IPI] [GO:0010199 "organ
boundary specification between lateral organs and the meristem"
evidence=IGI] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=NAS] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=RCA;IMP] [GO:0009611 "response to wounding"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000226
"microtubule cytoskeleton organization" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006306
"DNA methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00951 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0009611 GO:GO:0006355
GO:GO:0003677 GO:GO:0003682 GO:GO:0016887 GO:GO:0004386
GO:GO:0009908 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0010199 GO:GO:0040029 InterPro:IPR014012
PROSITE:PS51204 IPI:IPI00516285 RefSeq:NP_850116.1 UniGene:At.22414
PRIDE:F4IHS2 EnsemblPlants:AT2G28290.1 GeneID:817375
KEGG:ath:AT2G28290 OMA:SDLYAIS Uniprot:F4IHS2
Length = 3574
Score = 831 (297.6 bits), Expect = 5.2e-93, Sum P(3) = 5.2e-93
Identities = 186/400 (46%), Positives = 251/400 (62%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM--YDRSKLSKVD 61
WQSE++ W PS+ I Y G D+R +LF +++ KFNVL+TTYE++M +DR KLSK+
Sbjct: 818 WQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQKFNVLLTTYEYLMNKHDRPKLSKIH 877
Query: 62 WKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDN 121
W YIIIDE R+K+ L DL Y RLLLTGTPLQN+ P +F++
Sbjct: 878 WHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNS 937
Query: 122 RKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPP 181
+ F WF++PFQ G + +A++ L E+ ++II+RLHQ+L PF+LRR VE LP
Sbjct: 938 SEDFSQWFNKPFQSNGES-SAEEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPE 996
Query: 182 KVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 241
K+ ++RC SA Q + +K RV ED I AK + ++N MELR
Sbjct: 997 KIERLIRCEASAYQKLL---MK-----RV--EDNL-----GSIGNAKS-RAVHNSVMELR 1040
Query: 242 KTCNHPLLNYPYFSDLS----KDFL---VKSCGKLWILDRILIKLQRTGHRVLLFSTMTK 294
CNHP L+ + +++ K FL V+ CGKL +LDR+L KL+ T HRVL FSTMT+
Sbjct: 1041 NICNHPYLSQLHSEEVNNIIPKHFLPPIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTR 1100
Query: 295 LLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS 354
LLD++E+YL + Y R+DG TS DR + I FN S FIFLLSIRA G G+NLQ+
Sbjct: 1101 LLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQA 1160
Query: 355 ADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAV 394
ADTVI++D D NP+ + QA ARAHRIGQK++V V+ E V
Sbjct: 1161 ADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETV 1200
Score = 130 (50.8 bits), Expect = 5.2e-93, Sum P(3) = 5.2e-93
Identities = 30/97 (30%), Positives = 60/97 (61%)
Query: 416 EDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEE 475
+D L + + S+E +R + + +K+ +A++ I AG FD T+ E+R+ LE+LL + +
Sbjct: 1190 KDVLVLRFETVNSVEEQVRASAE-HKLGVANQSITAGFFDNNTSAEDRKEYLESLLRESK 1248
Query: 476 RYQETVHDVPSLQE--VNRMIARSEDEVELFDQMDEE 510
+ + D P L + +N +IAR E E+++F+ +D++
Sbjct: 1249 KEE----DAPVLDDDALNDLIARRESEIDIFESIDKQ 1281
Score = 51 (23.0 bits), Expect = 5.2e-93, Sum P(3) = 5.2e-93
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 800 ESNSLRHDQSEPSSKSRRNLP 820
E++ L+H EPS+ +R N+P
Sbjct: 1882 ETSLLKHKVGEPSATTRTNVP 1902
Score = 43 (20.2 bits), Expect = 3.6e-92, Sum P(3) = 3.6e-92
Identities = 22/98 (22%), Positives = 42/98 (42%)
Query: 675 VSPVSPQKFGSLSALEARPGSLSKRMP--DELEEGEIAVSGDSHMDHQQ--SGSWTHDRD 730
++P K G+LS +A+ +++K P + +I SG + ++ SG+ R
Sbjct: 1805 LTPQIEVKVGNLSGTKAKFDAVAKEQPHFSQSVAPDIHSSGSLSQEIRRDTSGTGGSARK 1864
Query: 731 EGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTP 768
+ D + +K S +H V P + T+ P
Sbjct: 1865 QTADVTDVARVMKEIFSETSLLKHKVGEPSATTRTNVP 1902
Score = 42 (19.8 bits), Expect = 1.3e-81, Sum P(2) = 1.3e-81
Identities = 43/184 (23%), Positives = 76/184 (41%)
Query: 399 SSHQKEDELRSGGT----VDLEDDLAGKDRY-IGSIEGLIRNNIQQYKIDMAD-EVINAG 452
SS Q EDE R+ + ++ + +D+ IGS+E + + + AD + +
Sbjct: 2732 SSTQPEDENRNSLSHCEPSEVVEQRDSRDQVCIGSVESQVEISSAILENRSADIQPPQSI 2791
Query: 453 RFDQRTTHEERRMTLETL---LH---DEERYQETVHDVPSLQEVNRMIARSEDEVELFDQ 506
DQ+ E + +E+ LH D + + D ++E S D V L
Sbjct: 2792 LVDQKDIEESKEPGIESADVSLHQLADIQAEPSNLVDQMDIEESKEPGTESAD-VSLHQL 2850
Query: 507 MDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETER 566
D + G DQ+ +KE A++S +I G +I VD +++TE+
Sbjct: 2851 ADIQPG---PSILVDQMDT---EKSKEPGTESADVSLHQLADIQPGPSILVD--QMDTEK 2902
Query: 567 KRGP 570
+ P
Sbjct: 2903 SKEP 2906
Score = 41 (19.5 bits), Expect = 5.8e-92, Sum P(3) = 5.8e-92
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 811 PSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGS-SN 869
P+ + RNLPSR PK R + G+ + + + K+ N SG+ +
Sbjct: 1766 PAKRRVRNLPSR--GETPK-RQGKRRGQPLPATDASSARSTGLTPQIEVKVGNLSGTKAK 1822
Query: 870 FSA 872
F A
Sbjct: 1823 FDA 1825
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 778 (278.9 bits), Expect = 8.3e-86, Sum P(3) = 8.3e-86
Identities = 198/535 (37%), Positives = 284/535 (53%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W E KW PSV + Y G+ R R F ++ + KFNVL+TTYE+I+ D+ L+K+
Sbjct: 67 LSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVPQLRSGKFNVLLTTYEYIIKDKHILAKI 125
Query: 61 DWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE RMK+ L + L+ Y RRLLLTGTPLQN P +F
Sbjct: 126 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIF 185
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE L
Sbjct: 186 KSCSTFEQWFNAPFAMTG--EKVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVEAQL 240
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M+
Sbjct: 241 PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGT-------KTLMNTIMQ 293
Query: 240 LRKTCNHPLLNYPYFSDLSKDF-----------LVKSCGKLWILDRILIKLQRTGHRVLL 288
LRK CNHP + S+ L ++ GK +LDRIL KL+ T H+VLL
Sbjct: 294 LRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLL 353
Query: 289 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348
F MT L+ I+E+Y +R Y R+DGTT EDR + FN S+ FIFLLS RA G
Sbjct: 354 FCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGL 413
Query: 349 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK-- 403
GLNLQSADTVII+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 414 GLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 473
Query: 404 ---EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH 460
+ ++ G D + + ++ + ++ + Q + DEV + +Q
Sbjct: 474 LNVDQKVIQAGMFDQKSSSHERRAFL---QAILEHEEQD---EEEDEVPDDETVNQMIAR 527
Query: 461 EERRMTLETLLHDEERYQETVHDV--PSLQEVNRM---IARSEDEVELFDQMDEE 510
E L + + R +E + P L E + + I + + EVE +EE
Sbjct: 528 HEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEE 582
Score = 62 (26.9 bits), Expect = 8.3e-86, Sum P(3) = 8.3e-86
Identities = 17/83 (20%), Positives = 36/83 (43%)
Query: 878 IQRRCKNVISK-LQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR 936
+ ++ K ++ ++ + G Q+ + L R E Y + D +KI +R+
Sbjct: 677 LTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPV-DFKKIKERIRN 735
Query: 937 LEYNGVMELVSDVQFMLKGAMQF 959
+Y + +L DV + + A F
Sbjct: 736 HKYRSLNDLEKDVMLLCQNAQTF 758
Score = 54 (24.1 bits), Expect = 8.3e-86, Sum P(3) = 8.3e-86
Identities = 20/84 (23%), Positives = 39/84 (46%)
Query: 698 KRMPDELEEGEIAVSGDSH---MDHQQS---GSWTHDRDEGEDEQVLQPKIKRKRSIRVR 751
+R+ E EE ++ G H +D+ S W +EG E++ + ++++K+S R R
Sbjct: 574 ERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEI-EEEVRQKKSSRKR 632
Query: 752 PRHTVERPEERSCTDTPLHRGDSS 775
R + P + + + D S
Sbjct: 633 KRDSDAGPSTPTTSTRSRDKDDES 656
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 773 (277.2 bits), Expect = 2.0e-85, Sum P(4) = 2.0e-85
Identities = 178/418 (42%), Positives = 241/418 (57%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W E KW PSV + Y G+ R R F ++ + KFNVL+TTYE+I+ D+ L+K+
Sbjct: 815 LSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVPQLRSGKFNVLLTTYEYIIKDKHILAKI 873
Query: 61 DWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE RMK+ L + L+ Y RRLLLTGTPLQN P +F
Sbjct: 874 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIF 933
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE L
Sbjct: 934 KSCSTFEQWFNAPFAMTG--EKVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVEAQL 988
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M+
Sbjct: 989 PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGT-------KTLMNTIMQ 1041
Query: 240 LRKTCNHPLLNYPYFSDLSKDF-----------LVKSCGKLWILDRILIKLQRTGHRVLL 288
LRK CNHP + S+ L ++ GK +LDRIL KL+ T H+VLL
Sbjct: 1042 LRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLL 1101
Query: 289 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348
F MT L+ I+E+Y +R Y R+DGTT EDR + FN S+ FIFLLS RA G
Sbjct: 1102 FCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGL 1161
Query: 349 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK 403
GLNLQSADTVII+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1162 GLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK 1219
Score = 89 (36.4 bits), Expect = 2.0e-85, Sum P(4) = 2.0e-85
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 439 QYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVH 482
+YK+++ +VI AG FDQ+++ ERR L+ +L EE+ E+ H
Sbjct: 1219 KYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ-DESRH 1261
Score = 84 (34.6 bits), Expect = 2.0e-85, Sum P(4) = 2.0e-85
Identities = 34/127 (26%), Positives = 63/127 (49%)
Query: 483 DVPSLQEVNRMIARSEDEVELFDQMD-----EEFGWIEEMTRY---DQVPKWLRASTKEV 534
+VP + VN+MIAR E+E +LF +MD EE + R D++P W+ K+
Sbjct: 1295 EVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWI---IKD- 1350
Query: 535 NATIANLSKKPSKNILFGSNIG----VDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSE 590
+A + L+ + + +FG VD + TE K+ K + +E+++E+ +
Sbjct: 1351 DAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTE-KQWLKAIEEGTLEEIEEEVRQKKS 1409
Query: 591 ASSDERN 597
+ +R+
Sbjct: 1410 SRKRKRD 1416
Score = 62 (26.9 bits), Expect = 2.0e-85, Sum P(4) = 2.0e-85
Identities = 17/83 (20%), Positives = 36/83 (43%)
Query: 878 IQRRCKNVISK-LQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR 936
+ ++ K ++ ++ + G Q+ + L R E Y + D +KI +R+
Sbjct: 1458 LTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPV-DFKKIKERIRN 1516
Query: 937 LEYNGVMELVSDVQFMLKGAMQF 959
+Y + +L DV + + A F
Sbjct: 1517 HKYRSLNDLEKDVMLLCQNAQTF 1539
Score = 45 (20.9 bits), Expect = 0.00034, Sum P(4) = 0.00034
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESV---LARDLDRY 87
D +S+VD ++II + Q + D V LAR L Y
Sbjct: 694 DSDDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSY 731
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 763 (273.6 bits), Expect = 1.6e-84, Sum P(3) = 1.6e-84
Identities = 173/398 (43%), Positives = 236/398 (59%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
++ W E +W PS+ I Y G R L Q V F VL+TTYE+I+ DR LS++
Sbjct: 478 LTNWTMEFERWAPSIVKIVYKGPPQVRKALHPQ-VRHSNFQVLLTTYEYIIKDRPLLSRI 536
Query: 61 DWKYIIIDEAQRMKDRESVLARDLDRYRCQR-RLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
W Y+IIDE RMK+ +S L L Y R RL+LTGTPLQN+ P +F
Sbjct: 537 KWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWALLNFVLPRIF 596
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
++ K+F +WF+ PF G D L E+ +++I RLH++L PF+LRR +DVE L
Sbjct: 597 NSIKSFDEWFNTPFANTG---GQDKMELTEEESLLVIRRLHKVLRPFLLRRLKKDVEAEL 653
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V+RC+MS +Q +Y +K G L V ED KR K I K L N M+
Sbjct: 654 PDKVEKVIRCQMSGLQQKLYYQMKKHGMLYV--EDAKRG--KTGI------KGLQNTVMQ 703
Query: 240 LRKTCNHPLLNYPYFSDLSK---------DFLVKSCGKLWILDRILIKLQRTGHRVLLFS 290
L+K CNHP + F D+ + D L + GK +LDRIL KL R+GHR+L+F
Sbjct: 704 LKKICNHPFV----FEDVERSIDPTGFNYDMLWRVSGKFELLDRILPKLFRSGHRILMFF 759
Query: 291 TMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGL 350
MT++++I+E+YL +RQ Y R+DG+T +DR + FN ++ +FLLS RA G GL
Sbjct: 760 QMTQIMNIMEDYLHYRQWRYLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGL 819
Query: 351 NLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
NLQ+ADTVII+D D NP + QA RAHRIGQ +EV++
Sbjct: 820 NLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEVRI 857
Score = 140 (54.3 bits), Expect = 1.6e-84, Sum P(3) = 1.6e-84
Identities = 31/74 (41%), Positives = 47/74 (63%)
Query: 439 QYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQ--EVNRMIAR 496
QYK+D+ +VI AG+FD ++T EER L +LL +E +E + L E+N ++AR
Sbjct: 875 QYKLDIDGKVIQAGKFDNKSTPEEREAFLRSLLENENGEEEN-DEKGELDDDELNEILAR 933
Query: 497 SEDEVELFDQMDEE 510
+DE+ LF QM E+
Sbjct: 934 GDDELRLFKQMTED 947
Score = 46 (21.3 bits), Expect = 1.6e-84, Sum P(3) = 1.6e-84
Identities = 18/80 (22%), Positives = 34/80 (42%)
Query: 746 RSIRVRPRHTVERPEER-SCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSL 804
R R RP+ + +E + T + P + +++ + LR ++ + N L
Sbjct: 1022 RPTRGRPKRNIASVDETPALTLNGKPKKKRGPAPDTLTSEHRSLLRRVC-LEIYKAVNEL 1080
Query: 805 RHDQSEPSSKSRRNLPSRKI 824
D P +K LPS+K+
Sbjct: 1081 EDDNGRPLNKLFLELPSKKL 1100
Score = 39 (18.8 bits), Expect = 6.5e-74, Sum P(3) = 6.5e-74
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 381 GQKREVKVIYMEAVVDK--ISSHQKEDELR 408
G +R V+Y EAV D ++ E E R
Sbjct: 993 GARRRTPVVYDEAVRDAQWMAEMDMESEAR 1022
Score = 37 (18.1 bits), Expect = 1.1e-72, Sum P(2) = 1.1e-72
Identities = 35/142 (24%), Positives = 56/142 (39%)
Query: 702 DELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVR--PR-HTVER 758
D+ E EI GD + + T D E E +++R I+V P + E
Sbjct: 923 DDDELNEILARGDDEL--RLFKQMTEDL---ERESPYGKNKEKERLIQVSELPEFYQREE 977
Query: 759 PEERS--CTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSR 816
PE+ + + PL RG P D +R D + A + S ++ P+
Sbjct: 978 PEKTTDLLQEEPLGRGARRRTPVVYDEA----VR-DAQWMAEMDMES----EARPT---- 1024
Query: 817 RNLPSRKIANAPKSRASLKTGR 838
R P R IA+ ++ A G+
Sbjct: 1025 RGRPKRNIASVDETPALTLNGK 1046
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 773 (277.2 bits), Expect = 2.2e-84, Sum P(4) = 2.2e-84
Identities = 178/418 (42%), Positives = 241/418 (57%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W E KW PSV + Y G+ R R F ++ + KFNVL+TTYE+I+ D+ L+K+
Sbjct: 815 LSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVPQLRSGKFNVLLTTYEYIIKDKHILAKI 873
Query: 61 DWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE RMK+ L + L+ Y RRLLLTGTPLQN P +F
Sbjct: 874 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIF 933
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE L
Sbjct: 934 KSCSTFEQWFNAPFAMTG--EKVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVEAQL 988
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M+
Sbjct: 989 PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGT-------KTLMNTIMQ 1041
Query: 240 LRKTCNHPLLNYPYFSDLSKDF-----------LVKSCGKLWILDRILIKLQRTGHRVLL 288
LRK CNHP + S+ L ++ GK +LDRIL KL+ T H+VLL
Sbjct: 1042 LRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLL 1101
Query: 289 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348
F MT L+ I+E+Y +R Y R+DGTT EDR + FN S+ FIFLLS RA G
Sbjct: 1102 FCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGL 1161
Query: 349 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK 403
GLNLQSADTVII+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1162 GLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK 1219
Score = 89 (36.4 bits), Expect = 2.2e-84, Sum P(4) = 2.2e-84
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 439 QYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVH 482
+YK+++ +VI AG FDQ+++ ERR L+ +L EE+ E+ H
Sbjct: 1219 KYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ-DESRH 1261
Score = 75 (31.5 bits), Expect = 2.2e-84, Sum P(4) = 2.2e-84
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 483 DVPSLQEVNRMIARSEDEVELFDQMD-----EEFGWIEEMTRY---DQVPKWLRASTKEV 534
+VP + VN+MIAR E+E +LF +MD EE + R D++P W+ K+
Sbjct: 1295 EVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWI---IKD- 1350
Query: 535 NATIANLSKKPSKNILFG 552
+A + L+ + + +FG
Sbjct: 1351 DAEVERLTCEEEEEKMFG 1368
Score = 62 (26.9 bits), Expect = 2.2e-84, Sum P(4) = 2.2e-84
Identities = 17/83 (20%), Positives = 36/83 (43%)
Query: 878 IQRRCKNVISK-LQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR 936
+ ++ K ++ ++ + G Q+ + L R E Y + D +KI +R+
Sbjct: 1490 LTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPV-DFKKIKERIRN 1548
Query: 937 LEYNGVMELVSDVQFMLKGAMQF 959
+Y + +L DV + + A F
Sbjct: 1549 HKYRSLNDLEKDVMLLCQNAQTF 1571
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 773 (277.2 bits), Expect = 2.6e-83, Sum P(3) = 2.6e-83
Identities = 178/418 (42%), Positives = 241/418 (57%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W E KW PSV + Y G+ R R F ++ + KFNVL+TTYE+I+ D+ L+K+
Sbjct: 614 LSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVPQLRSGKFNVLLTTYEYIIKDKHILAKI 672
Query: 61 DWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE RMK+ L + L+ Y RRLLLTGTPLQN P +F
Sbjct: 673 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIF 732
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE L
Sbjct: 733 KSCSTFEQWFNAPFAMTG--EKVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVEAQL 787
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M+
Sbjct: 788 PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGT-------KTLMNTIMQ 840
Query: 240 LRKTCNHPLLNYPYFSDLSKDF-----------LVKSCGKLWILDRILIKLQRTGHRVLL 288
LRK CNHP + S+ L ++ GK +LDRIL KL+ T H+VLL
Sbjct: 841 LRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLL 900
Query: 289 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348
F MT L+ I+E+Y +R Y R+DGTT EDR + FN S+ FIFLLS RA G
Sbjct: 901 FCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGL 960
Query: 349 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK 403
GLNLQSADTVII+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 961 GLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAK 1018
Score = 89 (36.4 bits), Expect = 2.6e-83, Sum P(3) = 2.6e-83
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 439 QYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVH 482
+YK+++ +VI AG FDQ+++ ERR L+ +L EE+ E+ H
Sbjct: 1018 KYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ-DESRH 1060
Score = 76 (31.8 bits), Expect = 2.6e-83, Sum P(3) = 2.6e-83
Identities = 33/130 (25%), Positives = 63/130 (48%)
Query: 483 DVPSLQEVNRMIARSEDEVELFDQMD-----EEFGWIEEMTRY---DQVPKWLRASTKEV 534
+VP + VN+MIAR E+E +LF +MD EE + R D++P W+ K+
Sbjct: 1094 EVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWI---IKD- 1149
Query: 535 NATIANLSKKPSKNILFGSNIG----VDSGEIETER---KRGPKGKKYPNYKEVDDEIGE 587
+A + L+ + + +FG VD + TE+ K+ + +E+++E+ +
Sbjct: 1150 DAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKQLKAAIEEGTLEEIEEEVRQ 1209
Query: 588 YSEASSDERN 597
+ +R+
Sbjct: 1210 KKSSRKRKRD 1219
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 753 (270.1 bits), Expect = 3.8e-83, Sum P(4) = 3.8e-83
Identities = 175/465 (37%), Positives = 269/465 (57%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
++ W E KW PSVS I Y G + R + Q + F VL+TTYE+I+ DR LSK+
Sbjct: 598 LTNWNLEFEKWAPSVSRIVYKGPPNARKQQ-QQNIRWGNFQVLLTTYEYIIKDRPILSKI 656
Query: 61 DWKYIIIDEAQRMKDRESVLARDLDRYRCQR-RLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
W ++I+DE RMK+ +S L+ L +Y R RL+LTGTPLQN+ P +F
Sbjct: 657 KWTHMIVDEGHRMKNTQSKLSSTLSQYYTSRYRLILTGTPLQNNLPELWALLNFVLPNIF 716
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ K+F +WF+ PF G D L E+++++I RLH++L PF+LRR +DVE L
Sbjct: 717 KSVKSFDEWFNTPFANTGGQDRMD---LTEEEQLLVIRRLHKVLRPFLLRRLKKDVEKDL 773
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P K V++CR SA+Q+ + + AT V + + +V + L+N M+
Sbjct: 774 PDKQERVIKCRFSALQAKLNKQL-ATHNKMVVSDGKGGKVGM---------RGLSNMLMQ 823
Query: 240 LRKTCNHPLLNYPYFSDL------SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMT 293
LRK CNHP + + D + D + ++ GK +LDRIL K + TGHRVL+F MT
Sbjct: 824 LRKLCNHPFV-FEQVEDQVNPGRGTNDLIWRTAGKFELLDRILPKFKATGHRVLMFFQMT 882
Query: 294 KLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ 353
++++I+E++L+ R + Y R+DG+T +DR + FN+ DS+ F FLLS RA G GLNLQ
Sbjct: 883 QIMNIMEDFLRLRGMKYLRLDGSTKSDDRSDLLKLFNAPDSEYFCFLLSTRAGGLGLNLQ 942
Query: 354 SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDEL--RSGG 411
+ADTVII+D D NP + QA RAHRIGQK EV+++ + I+S+ E+++ R+
Sbjct: 943 TADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRILRL------ITSNSVEEKILERAQF 996
Query: 412 TVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQ 456
+D++ + ++ R+ + + ++ A+ AG D+
Sbjct: 997 KLDMDGKVIQAGKFDNKSTNEERDALLRTLLETAEGTDQAGDQDE 1041
Score = 137 (53.3 bits), Expect = 3.8e-83, Sum P(4) = 3.8e-83
Identities = 29/73 (39%), Positives = 46/73 (63%)
Query: 439 QYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETV-HDVPSLQEVNRMIARS 497
Q+K+DM +VI AG+FD ++T+EER L TLL E + D ++N ++ARS
Sbjct: 995 QFKLDMDGKVIQAGKFDNKSTNEERDALLRTLLETAEGTDQAGDQDEMDDDDLNNIMARS 1054
Query: 498 EDEVELFDQMDEE 510
++E+ +F +MD E
Sbjct: 1055 DEELAVFQRMDRE 1067
Score = 54 (24.1 bits), Expect = 3.8e-83, Sum P(4) = 3.8e-83
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 740 PKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTE 794
P+ KRKR + +P T+ P++R+ L+ +L+ M+ + PA +D+E
Sbjct: 1208 PQPKRKRGRQAKPVETLS-PDDRAALQQILNNVYQALM--DMEQELPAD-SSDSE 1258
Score = 42 (19.8 bits), Expect = 3.8e-83, Sum P(4) = 3.8e-83
Identities = 29/106 (27%), Positives = 47/106 (44%)
Query: 923 NILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFY--G---FSHEVRSEARKVHDLF 977
N + + I ++++R EY + + +D+ + + A + G F EAR V +L
Sbjct: 1288 NPIAMDMIKKKINREEYQSLRDFRNDIGLLCQNARTYNEDGSILFQDANDIEARCVAELS 1347
Query: 978 FDLLKIAFPD-TDFREARSALSFTGPLSTSVS-TPSPRQTTVGQSK 1021
++ A P DF A S P+S + TPS T GQ K
Sbjct: 1348 KEVE--AHPQFADFDGP--ANSNDNPVSVAGGDTPSAAATP-GQPK 1388
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 823 (294.8 bits), Expect = 1.4e-82, Sum P(2) = 1.4e-82
Identities = 212/615 (34%), Positives = 333/615 (54%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W E KW PS+ I Y G++ QR R ++ F VL+TTYE+++ +R L+K +
Sbjct: 564 WTLEFEKWAPSIKVIVYKGSQQQR-RSLQPDIRYGNFQVLLTTYEYVIRERPMLAKFHYS 622
Query: 64 YIIIDEAQRMKDRESVLARDLDRY-RCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNR 122
++IIDE RMK+ +S L++ L Y + + RL+LTGTPLQN+ P +F++
Sbjct: 623 HMIIDEGHRMKNAQSKLSQTLRTYYKTKNRLILTGTPLQNNLPELWALLNFVLPGIFNSV 682
Query: 123 KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPK 182
K+F DWF+ PF G + L E+ +++I RLH++L PF+LRR +DVE LP K
Sbjct: 683 KSFDDWFNTPFANTGAQEKIE---LTEEESLLVIRRLHKVLRPFLLRRLKKDVEKDLPDK 739
Query: 183 VSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 242
V VL+C +S +Q +Y + L V + K+ I K LNN+ M+LRK
Sbjct: 740 VEKVLKCNLSGLQYVLYQQMLKHNALFVGADVGGA---KSGI------KGLNNKIMQLRK 790
Query: 243 TCNHPLL-----NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 297
CNHP + + S L+ D + + GK +LDR+L K +++GHRVL+F MT+++D
Sbjct: 791 ICNHPFVFEEVESVLNSSRLTNDLIWRVSGKFELLDRVLPKFKKSGHRVLMFFQMTQIMD 850
Query: 298 ILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT 357
I+E++L+W+ + Y R+DG+T E+R+ + FN+ DSD F FLLS RA G GLNLQ+ADT
Sbjct: 851 IMEDFLRWKDMKYLRLDGSTKAEERQDMLKVFNAPDSDYFCFLLSTRAGGLGLNLQTADT 910
Query: 358 VIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKI--SSHQKED---ELRS 409
VII+D D NP + QA RAHRIGQK EV+++ + ++V + I +HQK D ++
Sbjct: 911 VIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITNDSVEEVILERAHQKLDIDGKVIQ 970
Query: 410 GGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKID-MADEVINAGRFDQRTTHEERRMTLE 468
G D + ++ ++ + N + D + D+ +N + EE ++
Sbjct: 971 AGKFDNKSTAEEQEAFLKRLLEADANGADNEENDSLDDDELN----EILARSEEEKVLFA 1026
Query: 469 TLLHDEERYQETVHDVPSLQEVNRMIAR-SEDEVELFDQMDEEFGWIEEM--TRYDQ--- 522
++ DEER E V L E + + A +ED F++ ++E + + RYD
Sbjct: 1027 SM--DEERKSEKVPYKSRLIEKDELPAVFTEDISHHFEKKEKELSKMRDKKRVRYDDGLS 1084
Query: 523 VPKWLRASTKEVNATIANLSKKPSKNILFGS-NIGVDSGEIETERKRGPKGKKYPNYKEV 581
+WL+A + N T+ K+ + I N + G +E + K G E
Sbjct: 1085 EEQWLKAMDDD-NDTVEEAIKRKEERIAKRKRNKAIREGLLEEDIKDDEVG-------EE 1136
Query: 582 DDEIGEYSEASSDER 596
DDE ++ EA+ +
Sbjct: 1137 DDE--DFEEAAQPRK 1149
Score = 38 (18.4 bits), Expect = 1.4e-82, Sum P(2) = 1.4e-82
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 728 DRDEGEDEQVLQPKIKRKRSIRVRPRH 754
+ D+ + E+ QP+ KR+R R H
Sbjct: 1135 EEDDEDFEEAAQPR-KRQRRARTPLPH 1160
>FB|FBgn0000212 [details] [associations]
symbol:brm "brahma" species:7227 "Drosophila melanogaster"
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISS;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=NAS]
[GO:0003713 "transcription coactivator activity" evidence=ISS;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0035060 "brahma
complex" evidence=IDA;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=IGI] [GO:0035172 "hemocyte proliferation" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0007474 "imaginal disc-derived wing vein specification"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0006911 "phagocytosis,
engulfment" evidence=IMP] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI]
[GO:0008586 "imaginal disc-derived wing vein morphogenesis"
evidence=IMP] [GO:0008587 "imaginal disc-derived wing margin
morphogenesis" evidence=IMP] [GO:0045742 "positive regulation of
epidermal growth factor receptor signaling pathway" evidence=IMP]
[GO:0070983 "dendrite guidance" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] [GO:0043974 "histone H3-K27
acetylation" evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045893 GO:GO:0006911 EMBL:AE014296 GO:GO:0003677
GO:GO:0008586 GO:GO:0007474 GO:GO:0048477 GO:GO:0006351
GO:GO:0016887 GO:GO:0007517 GO:GO:0007409 GO:GO:0004386
GO:GO:0045742 GO:GO:0007480 GO:GO:0045749 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0008587 KO:K11647 EMBL:M85049
EMBL:AY095048 EMBL:BT009972 PIR:A42091 RefSeq:NP_536745.4
RefSeq:NP_536746.1 RefSeq:NP_730088.1 RefSeq:NP_730089.1
UniGene:Dm.5356 ProteinModelPortal:P25439 SMR:P25439 DIP:DIP-36728N
IntAct:P25439 MINT:MINT-6541230 STRING:P25439 PaxDb:P25439
EnsemblMetazoa:FBtr0075525 EnsemblMetazoa:FBtr0075526 GeneID:39744
KEGG:dme:Dmel_CG5942 CTD:39744 FlyBase:FBgn0000212
GeneTree:ENSGT00550000074659 InParanoid:P25439 OMA:QKKYTIS
OrthoDB:EOG4K3JB3 PhylomeDB:P25439 ChiTaRS:SMARCA2 GenomeRNAi:39744
NextBio:815155 Bgee:P25439 GermOnline:CG5942 GO:GO:0035060
GO:GO:0070983 GO:GO:0035172 GO:GO:0043974 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 Uniprot:P25439
Length = 1638
Score = 815 (292.0 bits), Expect = 3.0e-81, Sum P(2) = 3.0e-81
Identities = 222/607 (36%), Positives = 325/607 (53%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W E KW P+V + Y G+ R RL ++ A KFNVL+TTYE+++ D++ L+K+ WK
Sbjct: 837 WVLEFEKWAPAVGVVSYKGSPQGR-RLLQNQMRATKFNVLLTTYEYVIKDKAVLAKIQWK 895
Query: 64 YIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNR 122
Y+IIDE RMK+ L + L+ Y RLLLTGTPLQN P +F +
Sbjct: 896 YMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWALLNFLLPSIFKSC 955
Query: 123 KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPK 182
F WF+ PF G L E+ ++II RLH++L PF+LRR ++VE LP K
Sbjct: 956 STFEQWFNAPFATTGEKVE-----LNEEETILIIRRLHKVLRPFLLRRLKKEVEHQLPDK 1010
Query: 183 VSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 242
V +++C MSA+Q +Y +++ G L D EK + K K L N ++LRK
Sbjct: 1011 VEYIIKCDMSALQRVLYKHMQSKGVLLTDGS-EKGKHGKGGA------KALMNTIVQLRK 1063
Query: 243 TCNHPLLNYPYFSD-----------LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFST 291
CNHP + + + + +S L + GK +LDRIL KL+ T HRVLLF
Sbjct: 1064 LCNHPFM-FQHIEEKYCDHTGGHGVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQ 1122
Query: 292 MTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLN 351
MT+ + I+E+YL WRQ Y R+DGTT EDR + FN+ SD F+FLLS RA G GLN
Sbjct: 1123 MTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLN 1182
Query: 352 LQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKI--SSHQK--- 403
LQ+ADTV+I+D D NP + QA RAHRIGQ+ EV+V+ + +V ++I ++ K
Sbjct: 1183 LQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNM 1242
Query: 404 EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHE-E 462
++++ G D + + + +++ +I N ++ DE+IN R+ E E
Sbjct: 1243 DEKVIQAGMFDQKSTGSERQQFLQTILHQDDNEEEEENEVPDDEMINM--MIARSEEEIE 1300
Query: 463 --RRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMT-R 519
+RM E DEE +H P + R+I DE EL D + ++ +E +
Sbjct: 1301 IFKRMDAERKKEDEE-----IH--PGRE---RLI----DESELPDWLTKDDDEVERFHYQ 1346
Query: 520 YDQVPKWLRAST--KEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPN 577
YD+ R S KEV+ T + K+ K I G+ + E +++RKR +K N
Sbjct: 1347 YDEDTILGRGSRQRKEVDYTDSLTEKEWLKAIDDGAEFDEEEEEDDSKRKR----RKRKN 1402
Query: 578 YKEVDDE 584
KE D+
Sbjct: 1403 RKEESDD 1409
Score = 42 (19.8 bits), Expect = 3.0e-81, Sum P(2) = 3.0e-81
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 533 EVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDE 584
++N ++A+ P+++ SN V SG T +K+ + + Y DD+
Sbjct: 1587 KLNKSLASAPATPTQS---SSN--VSSGAATTSKKQTRRKRSQKKYTISDDD 1633
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 753 (270.1 bits), Expect = 5.4e-81, Sum P(2) = 5.4e-81
Identities = 168/399 (42%), Positives = 236/399 (59%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
++ W E KW PSV I Y G R L SQ + + FNVL+TT+E+I+ DR LS++
Sbjct: 930 LTNWIMEFEKWAPSVKKIAYKGPPQLRKTLQSQ-IRSSNFNVLLTTFEYIIKDRPLLSRI 988
Query: 61 DWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
W ++IIDE R+K+ +S L L Y Q RL+LTGTPLQN+ P++F
Sbjct: 989 KWVHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILTGTPLQNNLPELWALLNFVLPKIF 1048
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
++ K+F +WF+ PF G D L E+ ++II RLH++L PF+ RR +DVE L
Sbjct: 1049 NSIKSFDEWFNTPFANTG---GQDKIGLNEEEALLIIKRLHKVLRPFLFRRLKKDVEKEL 1105
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C +S +Q +Y +K G L VD E K + K L N M+
Sbjct: 1106 PDKVEKVIKCPLSGLQLKLYQQMKKHGMLFVDGEKGKTGI-----------KGLQNTVMQ 1154
Query: 240 LRKTCNHPLLNYPYFSDLSK---------DFLVKSCGKLWILDRILIKLQRTGHRVLLFS 290
L+K CNHP + F D+ + D L ++ GK +LDRIL KL TGH+ L+F
Sbjct: 1155 LKKICNHPFI----FEDVERAIDPSGTNVDLLWRAAGKFELLDRILPKLFLTGHKTLMFF 1210
Query: 291 TMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGL 350
MT+++ I+E+YL+ + Y R+DG+T +DR S + FN SD +IF+LS RA G GL
Sbjct: 1211 QMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLAQFNDPKSDVYIFMLSTRAGGLGL 1270
Query: 351 NLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 389
NLQ+ADTVII+D D NP + QA RAHRIGQ +EV+++
Sbjct: 1271 NLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRIL 1309
Score = 139 (54.0 bits), Expect = 5.4e-81, Sum P(2) = 5.4e-81
Identities = 32/85 (37%), Positives = 52/85 (61%)
Query: 430 EGLIRNNI---QQYKIDMADEVINAGRFDQRTTHEERRMTLETLL-HDEERYQETVHDVP 485
E I NI QYK+D+ +VI AG+FD ++T EER L +LL HD + + +
Sbjct: 1314 EKSIEENILSRAQYKLDLDGKVIQAGKFDNKSTPEEREAFLRSLLEHDGDDDHDLTYGEL 1373
Query: 486 SLQEVNRMIARSEDEVELFDQMDEE 510
E+N +I+R+++E+ LF ++D+E
Sbjct: 1374 QDDELNELISRTDEELVLFKKLDKE 1398
Score = 63 (27.2 bits), Expect = 5.5e-73, Sum P(2) = 5.5e-73
Identities = 51/262 (19%), Positives = 93/262 (35%)
Query: 720 QQSGSWTHDRDEGE-DEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLP 778
+ G HD GE + L I R V + + +ER+ TD ++ L
Sbjct: 1359 EHDGDDDHDLTYGELQDDELNELISRTDEELVLFK---KLDKERAATD--IYGKGKPLER 1413
Query: 779 FQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIA----NAPKSRASL 834
N+ P + + + A S+ L E + R ++ ++ N +S
Sbjct: 1414 LLTVNELPDFYKVEVDSFAVQSSSELEDQYLERKRRRRNSISYTELTLDELNTVDDPSST 1473
Query: 835 KTGRLNCMPGHTEDAADHFKE--SWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRR 892
R P ++ S + +A SG N + ++R C + +L
Sbjct: 1474 LMPRKRGRPRKKTNSGSSLSTPLSQESSLAR-SGRKNTPSYKQKALRRYCMEIFERLYNL 1532
Query: 893 IEKEGHQIVPL-LTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 951
++G + L L +++ Y+ + L KI + + Y V EL++D
Sbjct: 1533 QSEDGRFVNGLFLYPPNRKLYPDYYI--IIKRPIALGKIKRNIKNDRYGDVGELIADFML 1590
Query: 952 MLKGAMQFYGFSHEVRSEARKV 973
M A Y H + E K+
Sbjct: 1591 MFNNAYT-YNEEHSIVYEDAKL 1611
>DICTYBASE|DDB_G0285205 [details] [associations]
symbol:snf2a "SNF2-related protein SNF2a"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 dictyBase:DDB_G0285205 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000075 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K11647 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 RefSeq:XP_638342.2
ProteinModelPortal:Q54NM0 STRING:Q54NM0 PRIDE:Q54NM0
EnsemblProtists:DDB0233441 GeneID:8624967 KEGG:ddi:DDB_G0285205
OMA:HASKHRV Uniprot:Q54NM0
Length = 1604
Score = 744 (267.0 bits), Expect = 5.3e-78, Sum P(3) = 5.3e-78
Identities = 165/418 (39%), Positives = 253/418 (60%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W SE +W P + I Y G +D+R R ++ + F V++T++E+I+ DR L +V
Sbjct: 685 ISNWVSEFARWSPKLHVIVYKGKQDER-RETARTIPRNAFCVVITSFEYIIKDRKTLGRV 743
Query: 61 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFD 120
W YIIIDE R+K++ S L+ L +Y + RLLLTGTPLQND P +F+
Sbjct: 744 HWIYIIIDEGHRIKNKNSKLSVQLRQYHSRNRLLLTGTPLQNDLGELWALLNFLLPTIFN 803
Query: 121 NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP 180
+ F +WF+ PFQ +G N + + E+ +III+RLHQ+L F+LRR DVE LP
Sbjct: 804 SADTFQNWFNAPFQAKGK--NLIN--VNEEESLIIINRLHQVLRFFLLRRLKSDVESQLP 859
Query: 181 PKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 240
K V++C MSA+Q A+Y + G L +DP+ ++ R + K+ K NN +L
Sbjct: 860 DKKEKVIKCNMSALQIAMYRSLVEYGVLPIDPDSKEGRSGR-----LKM-KGFNNIVKQL 913
Query: 241 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILE 300
+K CNHP L + D+++D L+++ GK +D+IL K+ + HRVL+F+ MT++++++E
Sbjct: 914 QKICNHPYLFKDEW-DINED-LIRTSGKFDTMDQILTKMHASKHRVLIFTQMTEVINLME 971
Query: 301 EYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 360
EY ++ + R+DG+T E+R +V++N DS +IF+LS A G G+NLQ+ADTVII
Sbjct: 972 EYFSLKEWTFLRLDGSTKPEERAHLVVEWNRPDSPFWIFVLSTHAGGLGMNLQTADTVII 1031
Query: 361 YDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDD 418
+D D NP+ + QA R HRIGQ V V + IS++ E+++ T LE D
Sbjct: 1032 FDSDWNPQMDLQAQDRCHRIGQTNSVSVFRL------ISANSIEEKILGRATDKLEID 1083
Score = 120 (47.3 bits), Expect = 5.3e-78, Sum P(3) = 5.3e-78
Identities = 26/71 (36%), Positives = 44/71 (61%)
Query: 441 KIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVP-SLQEVNRMIARSED 499
K+++ ++I AG F+ + +ERR LE LH T+ +VP L+E+N++IAR +
Sbjct: 1079 KLEIDAKIIQAGMFNTHSNDQERRAKLEQFLHGFPN--NTLDEVPVDLKEINKLIARDDF 1136
Query: 500 EVELFDQMDEE 510
E + F +MD+E
Sbjct: 1137 EFKQFQEMDKE 1147
Score = 46 (21.3 bits), Expect = 3.0e-70, Sum P(3) = 3.0e-70
Identities = 26/102 (25%), Positives = 47/102 (46%)
Query: 414 DLEDDLAGKDRY--IGSIEGLIRNNI--QQYKIDMADEVINAGRFDQRTTH-EERRMTLE 468
D ++D+AGK R I S + +N+ QY M ++ + F+Q H E +++
Sbjct: 1184 DKDEDIAGKKRSTAIASANSFVHDNLTDNQYA-RMIEKNMT---FEQYKAHLEAKKLKNG 1239
Query: 469 TLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEE 510
D E+ ++ S N+ S+DE D++D+E
Sbjct: 1240 KSKKDGEKSKKKKGK--SRGRKNK----SDDEDSSDDELDDE 1275
Score = 44 (20.5 bits), Expect = 5.3e-70, Sum P(2) = 5.3e-70
Identities = 31/144 (21%), Positives = 58/144 (40%)
Query: 689 LEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDR---DEGEDEQVLQPKIKRK 745
L P + +P +L+E ++ D + +Q +R D+ ++ QP IK +
Sbjct: 1109 LHGFPNNTLDEVPVDLKEINKLIARDD-FEFKQFQEMDKERLKVDQANSKKTRQP-IKPR 1166
Query: 746 RSIRVR-PRHTVERPEERSCTD-------TPLHRGDSSLLPFQMDNKYPAQLR---TDTE 794
I P + P D T + +S + DN+Y + T +
Sbjct: 1167 LMIEKELPEWVLATPVTDKDEDIAGKKRSTAIASANSFVHDNLTDNQYARMIEKNMTFEQ 1226
Query: 795 MKAHGESNSLRHDQSEPSS-KSRR 817
KAH E+ L++ +S+ KS++
Sbjct: 1227 YKAHLEAKKLKNGKSKKDGEKSKK 1250
Score = 43 (20.2 bits), Expect = 5.3e-78, Sum P(3) = 5.3e-78
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 553 SNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERN 597
S + + T KRG K K PN + D+E + E ++ N
Sbjct: 1498 STAATNGTSVHTPGKRGRKKKIRPNPE--DEEKDKDKENENENEN 1540
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 778 (278.9 bits), Expect = 1.2e-77, Sum P(3) = 1.2e-77
Identities = 198/535 (37%), Positives = 284/535 (53%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W E KW PSV + Y G+ R R F ++ + KFNVL+TTYE+I+ D+ L+K+
Sbjct: 807 LSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVPQLRSGKFNVLLTTYEYIIKDKHILAKI 865
Query: 61 DWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE RMK+ L + L+ Y RRLLLTGTPLQN P +F
Sbjct: 866 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIF 925
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE L
Sbjct: 926 KSCSTFEQWFNAPFAMTG--EKVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVEAQL 980
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M+
Sbjct: 981 PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGT-------KTLMNTIMQ 1033
Query: 240 LRKTCNHPLLNYPYFSDLSKDF-----------LVKSCGKLWILDRILIKLQRTGHRVLL 288
LRK CNHP + S+ L ++ GK +LDRIL KL+ T H+VLL
Sbjct: 1034 LRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLL 1093
Query: 289 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348
F MT L+ I+E+Y +R Y R+DGTT EDR + FN S+ FIFLLS RA G
Sbjct: 1094 FCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGL 1153
Query: 349 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK-- 403
GLNLQSADTVII+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1154 GLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1213
Query: 404 ---EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH 460
+ ++ G D + + ++ + ++ + Q + DEV + +Q
Sbjct: 1214 LNVDQKVIQAGMFDQKSSSHERRAFL---QAILEHEEQD---EEEDEVPDDETVNQMIAR 1267
Query: 461 EERRMTLETLLHDEERYQETVHDV--PSLQEVNRM---IARSEDEVELFDQMDEE 510
E L + + R +E + P L E + + I + + EVE +EE
Sbjct: 1268 HEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEE 1322
Score = 62 (26.9 bits), Expect = 1.2e-77, Sum P(3) = 1.2e-77
Identities = 17/83 (20%), Positives = 36/83 (43%)
Query: 878 IQRRCKNVISK-LQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR 936
+ ++ K ++ ++ + G Q+ + L R E Y + D +KI +R+
Sbjct: 1417 LTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPV-DFKKIKERIRN 1475
Query: 937 LEYNGVMELVSDVQFMLKGAMQF 959
+Y + +L DV + + A F
Sbjct: 1476 HKYRSLNDLEKDVMLLCQNAQTF 1498
Score = 54 (24.1 bits), Expect = 1.2e-77, Sum P(3) = 1.2e-77
Identities = 20/84 (23%), Positives = 39/84 (46%)
Query: 698 KRMPDELEEGEIAVSGDSH---MDHQQS---GSWTHDRDEGEDEQVLQPKIKRKRSIRVR 751
+R+ E EE ++ G H +D+ S W +EG E++ + ++++K+S R R
Sbjct: 1314 ERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEI-EEEVRQKKSSRKR 1372
Query: 752 PRHTVERPEERSCTDTPLHRGDSS 775
R + P + + + D S
Sbjct: 1373 KRDSDAGPSTPTTSTRSRDKDDES 1396
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 787 (282.1 bits), Expect = 3.4e-77, Sum P(2) = 3.4e-77
Identities = 198/541 (36%), Positives = 295/541 (54%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W E KW PS++ I Y G +QR L ++ F+VL+TTYE+I+ D+S LSK DW
Sbjct: 534 WTLEFEKWAPSLNTIIYKGTPNQRHSL-QHQIRVGNFDVLLTTYEYIIKDKSLLSKHDWA 592
Query: 64 YIIIDEAQRMKDRESVLARDLDRY-RCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNR 122
++IIDE RMK+ +S L+ + Y R + RL+LTGTPLQN+ P++F++
Sbjct: 593 HMIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTGTPLQNNLPELWALLNFVLPKIFNSA 652
Query: 123 KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPK 182
K F DWF+ PF G + L E+ ++II RLH++L PF+LRR ++VE LP K
Sbjct: 653 KTFEDWFNTPFANTGTQEKLE---LTEEETLLIIRRLHKVLRPFLLRRLKKEVEKDLPDK 709
Query: 183 VSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 242
V V++C++S +Q +Y + L V E K I K LNN+ M+LRK
Sbjct: 710 VEKVIKCKLSGLQQQLYQQMLKHNALFVGAGTEG--ATKGGI------KGLNNKIMQLRK 761
Query: 243 TCNHPLL-----NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 297
CNHP + S + D L + GK +LDR+L K + +GHRVL+F MT+++D
Sbjct: 762 ICNHPFVFDEVEGVVNPSRGNSDLLFRVAGKFELLDRVLPKFKASGHRVLMFFQMTQVMD 821
Query: 298 ILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT 357
I+E++L+ + L Y R+DG+T E+R + FN+ DSD F FLLS RA G GLNLQ+ADT
Sbjct: 822 IMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGLNLQTADT 881
Query: 358 VIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSH--QKED---ELRS 409
VII+D D NP + QA RAHRIGQK EV+++ + ++V + I QK D ++
Sbjct: 882 VIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTDSVEEVILERAMQKLDIDGKVIQ 941
Query: 410 GGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN---AGRFDQRTTHEE---R 463
G D + ++ ++ + N K ++ D+ +N A D++ ++
Sbjct: 942 AGKFDNKSTAEEQEAFLRRLIESETNRDDDDKAELDDDELNDTLARSADEKILFDKIDKE 1001
Query: 464 RMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEE-FGWIEEMTR--Y 520
RM E + + + L E+ ++ ED E F + D E G I + R Y
Sbjct: 1002 RMNQERADAKAQGLRVPPPRLIQLDELPKVFR--EDIEEHFKKEDSEPLGRIRQKKRVYY 1059
Query: 521 D 521
D
Sbjct: 1060 D 1060
Score = 55 (24.4 bits), Expect = 3.4e-77, Sum P(2) = 3.4e-77
Identities = 45/211 (21%), Positives = 88/211 (41%)
Query: 733 EDEQVLQPKIKRKRSIRVRPR---HTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQL 789
+D L+ IK++R R R R + + E + +TP ++SL+ +N + A +
Sbjct: 1074 DDNMSLEDAIKKRREARERRRLRQNGTKENEIETLENTP-EASETSLIE---NNSFTAAV 1129
Query: 790 RTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDA 849
D E A E+ + R + SS+ +R + S A ++ T + N G +
Sbjct: 1130 --DEETNADKETTASRSKRR--SSRKKRTI-SIVTAEDKENTQEESTSQEN---GGAK-V 1180
Query: 850 ADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQ-RRIEKEGHQIVPLLTDLW 908
+ K S +I N S S K++ I+ V+ +R E++ P
Sbjct: 1181 EEEVKSS-SVEIINGSESKKKKPKLTVKIKLNKTTVLENNDGKRAEEKPESKSPAKKTAA 1239
Query: 909 KRIETSGYVSGAGNNILDL-RKIDQRVDRLE 938
K+ +T G + L ++ +++D ++
Sbjct: 1240 KKTKTKSKSLGIFPTVEKLVEEMREQLDEVD 1270
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 783 (280.7 bits), Expect = 4.8e-77, Sum P(2) = 4.8e-77
Identities = 215/616 (34%), Positives = 320/616 (51%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W E KW PSV + Y G+ R R F ++ + KFNVL+TTYE+I+ D+ L+K+
Sbjct: 815 LSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVPQLRSGKFNVLLTTYEYIIKDKHILAKI 873
Query: 61 DWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE RMK+ L + L+ Y RRLLLTGTPLQN P +F
Sbjct: 874 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIF 933
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE L
Sbjct: 934 KSCSTFEQWFNAPFAMTG--EKVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVEAQL 988
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M+
Sbjct: 989 PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGT-------KTLMNTIMQ 1041
Query: 240 LRKTCNHPLLNYPYFSDLSKDF-----------LVKSCGKLWILDRILIKLQRTGHRVLL 288
LRK CNHP + S+ L ++ GK +LDRIL KL+ T H+VLL
Sbjct: 1042 LRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLL 1101
Query: 289 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348
F MT L+ I+E+Y +R Y R+DGTT EDR + FN S+ FIFLLS RA G
Sbjct: 1102 FCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGL 1161
Query: 349 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK-- 403
GLNLQSADTVII+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1162 GLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221
Query: 404 ---EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH 460
+ ++ G D + + ++ + ++ + Q + DEV + +Q
Sbjct: 1222 LNVDQKVIQAGMFDQKSSSHERRAFL---QAILEHEEQD---EEEDEVPDDETVNQMIAR 1275
Query: 461 EERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRY 520
E L + D +R +E + P + R++ EDE+ + D+ +E +T
Sbjct: 1276 HEEEFDLFMRM-DLDRRREEARN-PKRKP--RLM--EEDELPSWIIKDD--AEVERLTCE 1327
Query: 521 DQVPKWL-RAST--KEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPN 577
++ K R S KEV+ + + K+ K + ++ G +E E + + KK
Sbjct: 1328 EEEEKMFGRGSRHRKEVDYSDSLTEKQWLKQL----KAAIEEGTLE-EIEEEVRQKKSSR 1382
Query: 578 YKEVDDEIGEYSEASS 593
++ D E G + +S
Sbjct: 1383 KRKRDSEAGSSTPTTS 1398
Score = 64 (27.6 bits), Expect = 4.8e-77, Sum P(2) = 4.8e-77
Identities = 24/117 (20%), Positives = 47/117 (40%)
Query: 843 PGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVP 902
P + + D +ES K + S ++ ++ K V + ++ + G Q+
Sbjct: 1395 PTTSTRSRDKDEESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSE 1454
Query: 903 LLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQF 959
+ L R E Y + D +KI +R+ +Y + +L DV + + A F
Sbjct: 1455 VFIQLPSRKELPEYYELIRKPV-DFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTF 1510
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 778 (278.9 bits), Expect = 8.7e-77, Sum P(2) = 8.7e-77
Identities = 198/535 (37%), Positives = 284/535 (53%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W E KW PSV + Y G+ R R F ++ + KFNVL+TTYE+I+ D+ L+K+
Sbjct: 815 LSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVPQLRSGKFNVLLTTYEYIIKDKHILAKI 873
Query: 61 DWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE RMK+ L + L+ Y RRLLLTGTPLQN P +F
Sbjct: 874 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIF 933
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE L
Sbjct: 934 KSCSTFEQWFNAPFAMTG--EKVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVEAQL 988
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M+
Sbjct: 989 PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGT-------KTLMNTIMQ 1041
Query: 240 LRKTCNHPLLNYPYFSDLSKDF-----------LVKSCGKLWILDRILIKLQRTGHRVLL 288
LRK CNHP + S+ L ++ GK +LDRIL KL+ T H+VLL
Sbjct: 1042 LRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLL 1101
Query: 289 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348
F MT L+ I+E+Y +R Y R+DGTT EDR + FN S+ FIFLLS RA G
Sbjct: 1102 FCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGL 1161
Query: 349 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK-- 403
GLNLQSADTVII+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1162 GLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221
Query: 404 ---EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH 460
+ ++ G D + + ++ + ++ + Q + DEV + +Q
Sbjct: 1222 LNVDQKVIQAGMFDQKSSSHERRAFL---QAILEHEEQD---EEEDEVPDDETVNQMIAR 1275
Query: 461 EERRMTLETLLHDEERYQETVHDV--PSLQEVNRM---IARSEDEVELFDQMDEE 510
E L + + R +E + P L E + + I + + EVE +EE
Sbjct: 1276 HEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEE 1330
Score = 68 (29.0 bits), Expect = 8.7e-77, Sum P(2) = 8.7e-77
Identities = 17/82 (20%), Positives = 36/82 (43%)
Query: 878 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRL 937
+ ++ K ++ + + + G Q+ + L R E Y + D +KI +R+
Sbjct: 1425 LTKKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPV-DFKKIKERIRNH 1483
Query: 938 EYNGVMELVSDVQFMLKGAMQF 959
+Y + +L DV + + A F
Sbjct: 1484 KYRSLNDLEKDVMLLCQNAQTF 1505
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 778 (278.9 bits), Expect = 8.7e-77, Sum P(2) = 8.7e-77
Identities = 198/535 (37%), Positives = 284/535 (53%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W E KW PSV + Y G+ R R F ++ + KFNVL+TTYE+I+ D+ L+K+
Sbjct: 815 LSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVPQLRSGKFNVLLTTYEYIIKDKHILAKI 873
Query: 61 DWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE RMK+ L + L+ Y RRLLLTGTPLQN P +F
Sbjct: 874 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIF 933
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE L
Sbjct: 934 KSCSTFEQWFNAPFAMTG--EKVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVEAQL 988
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M+
Sbjct: 989 PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGT-------KTLMNTIMQ 1041
Query: 240 LRKTCNHPLLNYPYFSDLSKDF-----------LVKSCGKLWILDRILIKLQRTGHRVLL 288
LRK CNHP + S+ L ++ GK +LDRIL KL+ T H+VLL
Sbjct: 1042 LRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLL 1101
Query: 289 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348
F MT L+ I+E+Y +R Y R+DGTT EDR + FN S+ FIFLLS RA G
Sbjct: 1102 FCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGL 1161
Query: 349 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK-- 403
GLNLQSADTVII+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1162 GLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221
Query: 404 ---EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH 460
+ ++ G D + + ++ + ++ + Q + DEV + +Q
Sbjct: 1222 LNVDQKVIQAGMFDQKSSSHERRAFL---QAILEHEEQD---EEEDEVPDDETVNQMIAR 1275
Query: 461 EERRMTLETLLHDEERYQETVHDV--PSLQEVNRM---IARSEDEVELFDQMDEE 510
E L + + R +E + P L E + + I + + EVE +EE
Sbjct: 1276 HEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEE 1330
Score = 68 (29.0 bits), Expect = 8.7e-77, Sum P(2) = 8.7e-77
Identities = 17/82 (20%), Positives = 36/82 (43%)
Query: 878 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRL 937
+ ++ K ++ + + + G Q+ + L R E Y + D +KI +R+
Sbjct: 1425 LTKKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPV-DFKKIKERIRNH 1483
Query: 938 EYNGVMELVSDVQFMLKGAMQF 959
+Y + +L DV + + A F
Sbjct: 1484 KYRSLNDLEKDVMLLCQNAQTF 1505
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 784 (281.0 bits), Expect = 1.1e-76, Sum P(3) = 1.1e-76
Identities = 202/537 (37%), Positives = 286/537 (53%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W EL KW PS+ I Y G R L Q + + KFNVL+TTYE+I+ D+ L+K+
Sbjct: 787 LSNWVYELDKWAPSIVKIAYKGTPSMRRSLVPQ-LRSGKFNVLITTYEYIIKDKHILAKI 845
Query: 61 DWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE RMK+ L + L+ Y RRLLLTGTPLQN P +F
Sbjct: 846 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIF 905
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE L
Sbjct: 906 KSCSTFEQWFNAPFAMTG--ERVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVESQL 960
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C MSAIQ +Y ++ G L D ++ ++ + KTL N M+
Sbjct: 961 PEKVEYVIKCDMSAIQKVLYRHMQGKGILLTDGSEKDKKGKGGA-------KTLMNTIMQ 1013
Query: 240 LRKTCNHPL------------LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVL 287
L+K CNHP L +P +S L ++ GK +LDRIL KL+ T HRVL
Sbjct: 1014 LKKICNHPYMFQHIEESFAEHLGFPN-GIISGPDLYRASGKFELLDRILPKLKATNHRVL 1072
Query: 288 LFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 347
LF MT L+ ILE+Y +R +Y R+DGTT EDR + FN S FIFLLS RA G
Sbjct: 1073 LFCQMTSLMTILEDYFGYRNFLYLRLDGTTKSEDRAMLLKKFNEEGSQYFIFLLSTRAGG 1132
Query: 348 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK- 403
GLNLQ+ADTV+I+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1133 LGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKY 1192
Query: 404 ----EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTT 459
+ ++ G D + + ++ +I N+++ ++ DE +N Q
Sbjct: 1193 KLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQNMEEDEVP-DDETLN-----QMIA 1246
Query: 460 HEERRMTLETLLHDEERYQETVHDV---PSLQEVNRM---IARSEDEVELFDQMDEE 510
E L + D +R +E + P L E + + I + + EVE +EE
Sbjct: 1247 RNEDEFELFMRM-DLDRRREDARNPKRKPRLMEEDELPSWILKDDAEVERLTCEEEE 1302
Score = 59 (25.8 bits), Expect = 1.1e-76, Sum P(3) = 1.1e-76
Identities = 22/94 (23%), Positives = 39/94 (41%)
Query: 897 GHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 956
G Q+ + L R E Y + D +KI +RV +Y V +L DV + A
Sbjct: 1404 GRQLSEVFVQLPSRKELPEYYELIRKPV-DFKKIKERVRSHKYRSVSDLEKDVMLLCHNA 1462
Query: 957 MQFYGFSHEVRSEARKVHDLFFDLL-KIAFPDTD 989
+ ++ ++ + +F KIA ++D
Sbjct: 1463 QTYNLEGSQIYEDSIVLQSVFKSARQKIAREESD 1496
Score = 38 (18.4 bits), Expect = 1.1e-76, Sum P(3) = 1.1e-76
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 1170 DAGKRRPSQ 1178
D GKRRPS+
Sbjct: 1530 DKGKRRPSR 1538
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 778 (278.9 bits), Expect = 2.3e-76, Sum P(2) = 2.3e-76
Identities = 198/535 (37%), Positives = 284/535 (53%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W E KW PSV + Y G+ R R F ++ + KFNVL+TTYE+I+ D+ L+K+
Sbjct: 815 LSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVPQLRSGKFNVLLTTYEYIIKDKHILAKI 873
Query: 61 DWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE RMK+ L + L+ Y RRLLLTGTPLQN P +F
Sbjct: 874 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIF 933
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE L
Sbjct: 934 KSCSTFEQWFNAPFAMTG--EKVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVEAQL 988
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M+
Sbjct: 989 PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGT-------KTLMNTIMQ 1041
Query: 240 LRKTCNHPLLNYPYFSDLSKDF-----------LVKSCGKLWILDRILIKLQRTGHRVLL 288
LRK CNHP + S+ L ++ GK +LDRIL KL+ T H+VLL
Sbjct: 1042 LRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLL 1101
Query: 289 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348
F MT L+ I+E+Y +R Y R+DGTT EDR + FN S+ FIFLLS RA G
Sbjct: 1102 FCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGL 1161
Query: 349 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK-- 403
GLNLQSADTVII+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1162 GLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221
Query: 404 ---EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH 460
+ ++ G D + + ++ + ++ + Q + DEV + +Q
Sbjct: 1222 LNVDQKVIQAGMFDQKSSSHERRAFL---QAILEHEEQD---EEEDEVPDDETVNQMIAR 1275
Query: 461 EERRMTLETLLHDEERYQETVHDV--PSLQEVNRM---IARSEDEVELFDQMDEE 510
E L + + R +E + P L E + + I + + EVE +EE
Sbjct: 1276 HEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEE 1330
Score = 64 (27.6 bits), Expect = 2.3e-76, Sum P(2) = 2.3e-76
Identities = 24/117 (20%), Positives = 47/117 (40%)
Query: 843 PGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVP 902
P + + D +ES K + S ++ ++ K V + ++ + G Q+
Sbjct: 1391 PTTSTRSRDKDEESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSE 1450
Query: 903 LLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQF 959
+ L R E Y + D +KI +R+ +Y + +L DV + + A F
Sbjct: 1451 VFIQLPSRKELPEYYELIRKPV-DFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTF 1506
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 778 (278.9 bits), Expect = 3.7e-76, Sum P(2) = 3.7e-76
Identities = 198/535 (37%), Positives = 284/535 (53%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W E KW PSV + Y G+ R R F ++ + KFNVL+TTYE+I+ D+ L+K+
Sbjct: 815 LSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVPQLRSGKFNVLLTTYEYIIKDKHILAKI 873
Query: 61 DWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE RMK+ L + L+ Y RRLLLTGTPLQN P +F
Sbjct: 874 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIF 933
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE L
Sbjct: 934 KSCSTFEQWFNAPFAMTG--EKVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVEAQL 988
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M+
Sbjct: 989 PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGT-------KTLMNTIMQ 1041
Query: 240 LRKTCNHPLLNYPYFSDLSKDF-----------LVKSCGKLWILDRILIKLQRTGHRVLL 288
LRK CNHP + S+ L ++ GK +LDRIL KL+ T H+VLL
Sbjct: 1042 LRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLL 1101
Query: 289 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348
F MT L+ I+E+Y +R Y R+DGTT EDR + FN S+ FIFLLS RA G
Sbjct: 1102 FCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGL 1161
Query: 349 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK-- 403
GLNLQSADTVII+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1162 GLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1221
Query: 404 ---EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH 460
+ ++ G D + + ++ + ++ + Q + DEV + +Q
Sbjct: 1222 LNVDQKVIQAGMFDQKSSSHERRAFL---QAILEHEEQD---EEEDEVPDDETVNQMIAR 1275
Query: 461 EERRMTLETLLHDEERYQETVHDV--PSLQEVNRM---IARSEDEVELFDQMDEE 510
E L + + R +E + P L E + + I + + EVE +EE
Sbjct: 1276 HEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEE 1330
Score = 62 (26.9 bits), Expect = 3.7e-76, Sum P(2) = 3.7e-76
Identities = 17/83 (20%), Positives = 36/83 (43%)
Query: 878 IQRRCKNVISK-LQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR 936
+ ++ K ++ ++ + G Q+ + L R E Y + D +KI +R+
Sbjct: 1425 LTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPV-DFKKIKERIRN 1483
Query: 937 LEYNGVMELVSDVQFMLKGAMQF 959
+Y + +L DV + + A F
Sbjct: 1484 HKYRSLNDLEKDVMLLCQNAQTF 1506
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 775 (277.9 bits), Expect = 8.6e-76, Sum P(2) = 8.6e-76
Identities = 207/564 (36%), Positives = 297/564 (52%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W E KW PSV I Y G R L Q + + KFNVL+TTYE+I+ D+ L+K+
Sbjct: 785 LSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIKDKHILAKI 843
Query: 61 DWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE RMK+ L + L+ Y RR+LLTGTPLQN P +F
Sbjct: 844 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF 903
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE L
Sbjct: 904 KSCSTFEQWFNAPFAMTG--ERVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVESQL 958
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M+
Sbjct: 959 PEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGA-------KTLMNTIMQ 1011
Query: 240 LRKTCNHPLL---------NYPYFSD--LSKDFLVKSCGKLWILDRILIKLQRTGHRVLL 288
LRK CNHP + + +S+ ++ L ++ GK +LDRIL KL+ T HRVLL
Sbjct: 1012 LRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLL 1071
Query: 289 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348
F MT L+ I+E+Y +R +Y R+DGTT EDR + + FN S FIFLLS RA G
Sbjct: 1072 FCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGL 1131
Query: 349 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK-- 403
GLNLQ+ADTV+I+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1132 GLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1191
Query: 404 ---EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH 460
+ ++ G D + + ++ +I N ++ ++ DE +N Q
Sbjct: 1192 LNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLN-----QMIAR 1245
Query: 461 EERRMTLETLLHDEERYQETVHDV---PSLQEVNRM---IARSEDEVELFDQMDEE---F 511
E L + D +R +E + P L E + + I + + EVE +EE F
Sbjct: 1246 REEEFDLFMRM-DMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIF 1304
Query: 512 GWIEEMTR---YDQV---PKWLRA 529
G R Y +WLRA
Sbjct: 1305 GRGSRQRRDVDYSDALTEKQWLRA 1328
Score = 62 (26.9 bits), Expect = 8.6e-76, Sum P(2) = 8.6e-76
Identities = 23/83 (27%), Positives = 34/83 (40%)
Query: 881 RC--KNVISKLQRRIE--KEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR 936
RC + V S Q IE G Q+ + L R E Y + D +KI +R+
Sbjct: 1400 RCNVEKVPSNSQLEIEGNSSGRQLSEVFIQLPSRKELPEYYELIRKPV-DFKKIKERIRN 1458
Query: 937 LEYNGVMELVSDVQFMLKGAMQF 959
+Y + +L DV + A F
Sbjct: 1459 HKYRSLGDLEKDVMLLCHNAQTF 1481
>ZFIN|ZDB-GENE-030605-1 [details] [associations]
symbol:smarca4 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 4"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031101 "fin regeneration" evidence=IMP] [GO:0003407 "neural
retina development" evidence=IMP] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0014032 "neural crest cell
development" evidence=IMP] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=IMP] [GO:0010842 "retina
layer formation" evidence=IMP] [GO:0021634 "optic nerve formation"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
[GO:0060973 "cell migration involved in heart development"
evidence=IMP] [GO:0001947 "heart looping" evidence=IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IMP] [GO:0048596
"embryonic camera-type eye morphogenesis" evidence=IMP] [GO:0000185
"activation of MAPKKK activity" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 ZFIN:ZDB-GENE-030605-1 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0030182 GO:GO:0003677 GO:GO:0007417
GO:GO:0004386 GO:GO:0001947 GO:GO:0010842 GO:GO:0014032
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0031101 GO:GO:0060038 GO:GO:0048596
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 GO:GO:0060059 GO:GO:0000185 HOGENOM:HOG000172363
HOVERGEN:HBG056636 CTD:6597 OMA:HKPMESM EMBL:BX322663 EMBL:BC163918
EMBL:BC163920 EMBL:AY205256 EMBL:AY218841 IPI:IPI00493397
RefSeq:NP_853634.1 UniGene:Dr.2414 SMR:Q7ZSY3 STRING:Q7ZSY3
Ensembl:ENSDART00000115110 Ensembl:ENSDART00000134514 GeneID:353295
KEGG:dre:353295 InParanoid:Q7ZSY3 NextBio:20812727 GO:GO:0060973
GO:GO:0021634 Uniprot:Q7ZSY3
Length = 1627
Score = 773 (277.2 bits), Expect = 8.8e-76, Sum P(2) = 8.8e-76
Identities = 198/534 (37%), Positives = 283/534 (52%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W E KW PSV + Y G+ R R F + + KFNVLVTTYE+I+ D+ L+K+
Sbjct: 827 LSNWVYEFDKWAPSVVKVSYKGSPAAR-RAFLPILRSGKFNVLVTTYEYIIKDKQVLAKL 885
Query: 61 DWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE RMK+ L + L+ Y RR+LLTGTPLQN P +F
Sbjct: 886 RWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRRVLLTGTPLQNKLPELWALLNFLLPTIF 945
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE L
Sbjct: 946 KSCSTFEQWFNAPFAMTG--EKVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVEAQL 1000
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M+
Sbjct: 1001 PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGT-------KTLMNTIMQ 1053
Query: 240 LRKTCNHPLLNYPYFSDLSKDF-----------LVKSCGKLWILDRILIKLQRTGHRVLL 288
LRK CNHP + S+ L ++ GK +LDRIL KL+ T H+VLL
Sbjct: 1054 LRKICNHPYMFQHIEESFSEHLGFTGGIVQGSDLYRASGKFELLDRILPKLRATNHKVLL 1113
Query: 289 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348
F MT L+ I+E+Y +R Y R+DGTT EDR + +FN FIFLLS RA G
Sbjct: 1114 FCQMTTLMTIMEDYFAYRNFKYLRLDGTTKAEDRGMLLKNFNDPSHQYFIFLLSTRAGGL 1173
Query: 349 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK-- 403
GLNLQSADTVII+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1174 GLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1233
Query: 404 ---EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMA--DEVINA--GRFDQ 456
+ ++ G D + + ++ + ++ + Q + D DE +N R ++
Sbjct: 1234 LNVDQKVIQAGMFDQKSSSHERRAFL---QAILEHEEQDEEEDEVPDDETVNQMIARSEE 1290
Query: 457 RTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEE 510
H RM L+ +E R + + E+ I + + EVE +EE
Sbjct: 1291 EFDHF-MRMDLDRR-REEARNPKRRPRLMEEDELPTWIMKDDAEVERLTCEEEE 1342
Score = 65 (27.9 bits), Expect = 8.8e-76, Sum P(2) = 8.8e-76
Identities = 18/82 (21%), Positives = 35/82 (42%)
Query: 878 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRL 937
+ ++ K + + + + G Q+ + L R E Y + D RKI +R+
Sbjct: 1440 LTKKMKKTVDAVIKYKDGNGRQLSEVFIQLPSRKELPEYYELIRKPV-DFRKIKERIRSH 1498
Query: 938 EYNGVMELVSDVQFMLKGAMQF 959
+Y + +L DV + + A F
Sbjct: 1499 KYRSLNDLEKDVMLLCQNAQTF 1520
Score = 42 (19.8 bits), Expect = 2.3e-73, Sum P(2) = 2.3e-73
Identities = 22/82 (26%), Positives = 34/82 (41%)
Query: 695 SLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRP-R 753
S+ +++ E EE E GD + + D DEG + + K+K K S + + R
Sbjct: 1540 SVRQKIEKEEEESE----GDDSEEEED------DVDEGSESESRSVKVKIKLSRKDKAER 1589
Query: 754 HTVERPEERSCTDTPLHRGDSS 775
R RS P+ D S
Sbjct: 1590 GKGRRRTGRSSRPKPVVSDDDS 1611
>WB|WBGene00004204 [details] [associations]
symbol:swsn-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006355
GO:GO:0003677 GO:GO:0040035 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 OMA:QKKYTIS InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:Z68751 EMBL:Z68341 EMBL:AF230280 PIR:T20488
RefSeq:NP_502082.1 UniGene:Cel.23435 ProteinModelPortal:G5EF53
SMR:G5EF53 EnsemblMetazoa:F01G4.1 GeneID:178015
KEGG:cel:CELE_F01G4.1 CTD:178015 WormBase:F01G4.1 NextBio:899366
Uniprot:G5EF53
Length = 1474
Score = 784 (281.0 bits), Expect = 9.5e-76, Sum P(2) = 9.5e-76
Identities = 211/613 (34%), Positives = 324/613 (52%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S WQ+E KW PSV+ I Y G KD R R+ Q + FNVL+TTYE+++ +++ L K+
Sbjct: 594 LSNWQNEFAKWAPSVTTIIYKGTKDARRRVEGQ-IRKGAFNVLMTTYEYVIKEKALLGKI 652
Query: 61 DWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+IIDE R+K+ L L+ + Q RLLLTGTPLQN P +F
Sbjct: 653 RWKYMIIDEGHRLKNHNCKLTLMLNGFFHAQHRLLLTGTPLQNKLPELWALLNFLLPSIF 712
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F WF+ PF G L E+ ++II RLH++L PF+LRR ++VE L
Sbjct: 713 SSCGTFEQWFNAPFATTGEKVE-----LNQEETMLIIRRLHKVLRPFLLRRLKKEVESQL 767
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVY---KTLNNR 236
P K V++C SA+Q IY R +QK + AK+ ++L N
Sbjct: 768 PDKTEYVIKCDQSALQKVIY-----------------RHMQKGLLLDAKMSSGARSLMNT 810
Query: 237 CMELRKTCNHPLLNYPYFSDLSKDF----------LVKSCGKLWILDRILIKLQRTGHRV 286
+ LRK CNHP L +P D + + L++ GKL +LDRIL KL+ TGHR+
Sbjct: 811 VVHLRKLCNHPFL-FPNIEDSCRAYWKVNEVNGTDLMRVAGKLELLDRILPKLKATGHRI 869
Query: 287 LLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 346
L+F MT +++I E++L +R+ Y R+DG+T ++R + FN+ +SD F+F+LS RA
Sbjct: 870 LMFFQMTSMMNIFEDFLNFRRYTYLRLDGSTKPDERGDLLTQFNAPNSDLFLFMLSTRAG 929
Query: 347 GRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKI--SSH 401
G GLNLQ+ADTVII+D D NP + QA RAHRIGQK+EV+V+ + +V +KI ++
Sbjct: 930 GLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQKKEVRVLRLITANSVEEKILAAAR 989
Query: 402 QK---EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRT 458
K ++++ G D G +R +E +I+ + ++ + +EV + +Q
Sbjct: 990 YKLNVDEKVIQAGKFDQRS--TGAERK-QMLEQIIQADGEE---EEEEEVPDDETVNQMV 1043
Query: 459 THEERRMTLETLLHDEERYQET--VHDVPSLQEVNRMIARSEDEVEL-FDQMDEEFGWIE 515
E + + + R +E +H P L E + + +D ++L FD + E E
Sbjct: 1044 ARSEEEFNIFQSMDIDRRREEANQLHRKPRLLEEHEI---PDDILKLSFDYEEMERAREE 1100
Query: 516 EMTRYDQVPKWLRASTKEVNATIANLSKKP-SKNILFGSNIGVDSGEIETERKRGPKGKK 574
DQ P R +EV+ + LS + K + + ++ + ERK+ K +K
Sbjct: 1101 GREVVDQTPNQ-RRRRREVDYSSDLLSDEQFMKQV---EEVEDENNQAVAERKKQRK-RK 1155
Query: 575 YPNYKEVDDEIGE 587
E DD + +
Sbjct: 1156 MAGLDENDDSMDD 1168
Score = 48 (22.0 bits), Expect = 9.5e-76, Sum P(2) = 9.5e-76
Identities = 19/87 (21%), Positives = 36/87 (41%)
Query: 743 KRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT--DTE-MKAHG 799
+ + S +V P+ E+ E S T + D P + + D+E
Sbjct: 1380 RAQASTKVTPKKD-EKKETSSSVKTEEAKKDDEPSTSSASAPPPKKKKESEDSEDPMEED 1438
Query: 800 ESNSLRHDQSEPSSKSRRNLPSRKIAN 826
E + + EP+S R++ P+R+ +N
Sbjct: 1439 EEEEIIGQKKEPASSRRKSRPTRRFSN 1465
Score = 39 (18.8 bits), Expect = 8.5e-75, Sum P(2) = 8.5e-75
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 565 ERKRGPKGKKYPNYKEVDDEI-GEYSEASSDERNGYPVQ 602
++K+ + + P ++ ++EI G+ E +S R P +
Sbjct: 1423 KKKKESEDSEDPMEEDEEEEIIGQKKEPASSRRKSRPTR 1461
>DICTYBASE|DDB_G0271052 [details] [associations]
symbol:snf2b "SNF2-related protein Snf2a"
species:44689 "Dictyostelium discoideum" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00951 dictyBase:DDB_G0271052 GO:GO:0005524 GO:GO:0005654
EMBL:AAFI02000005 GO:GO:0003677 GO:GO:0006357 GO:GO:0004386
InterPro:IPR011050 SUPFAM:SSF51126 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF47370
KO:K11647 InterPro:IPR014012 PROSITE:PS51204 RefSeq:XP_646649.1
ProteinModelPortal:Q55C32 EnsemblProtists:DDB0220695 GeneID:8617621
KEGG:ddi:DDB_G0271052 InParanoid:Q55C32 OMA:NINDNPN Uniprot:Q55C32
Length = 3247
Score = 781 (280.0 bits), Expect = 1.4e-75, Sum P(3) = 1.4e-75
Identities = 208/603 (34%), Positives = 320/603 (53%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W E KW P V + Y G K R F + +A +FN +VTTYE+I+ D++ LSK+
Sbjct: 1772 LSNWGQEFSKWAPKVKRVLYYGDKPARKSKFEEFIAPGQFNAVVTTYEYIIKDKNALSKI 1831
Query: 61 DWKYIIIDEAQRMKDRESVLARDLDR-YRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
W Y+I+DE RMK+ S L+ L Y + RLLLTGTPLQN P +F
Sbjct: 1832 KWNYLIVDEGHRMKNYTSKLSIILGTSYSSRYRLLLTGTPLQNSLPELWALLNFLLPTIF 1891
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
D + F WF+ PF + G ++ E++++II RLH++L PF+LRR ++VE L
Sbjct: 1892 DCVEDFEQWFNAPFAQTGEKIEMNE-----EEQLLIIQRLHKVLRPFLLRRLKKEVEAQL 1946
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV VL+C MSA Q+ +YD IK G ++ NP K+ K L N ++
Sbjct: 1947 PDKVEKVLKCDMSAFQAKMYDLIKTKGVSKLASSGG---ADGNP----KLAKGLKNTYVQ 1999
Query: 240 LRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDIL 299
LRK CNHP L Y ++ D L++ GK +LDR+L KL+ GHRVL+FS MT+L++IL
Sbjct: 2000 LRKICNHPYLFYDDEYNID-DNLIRYAGKFDLLDRLLPKLKAAGHRVLIFSQMTQLINIL 2058
Query: 300 EEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 359
E + ++ + R+DG+T ++R + FN+ +S+ FIF+LS RA G GLNLQ+ADTVI
Sbjct: 2059 EVFFAYKDYKFLRLDGSTKSDERGHLLELFNAPNSEYFIFVLSTRAGGLGLNLQTADTVI 2118
Query: 360 IYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDL 419
I+D D NP+ + QA RAHRIGQK+ V+V+ + +++H E+ + + + + +L
Sbjct: 2119 IFDSDWNPQMDLQAQDRAHRIGQKQTVRVLRL------VTAHSVEESILA--RANFKKEL 2170
Query: 420 AGKDRYIGSIEGLIRNNIQQYKIDMADEVIN--AGRFDQRTTHEERRMTLETLLHDEERY 477
K G ++N K + D + +++T + ++ E + E +
Sbjct: 2171 DKKIIQAGQFNN--KSNRSDRKKMLEDLMTQDETAEMEKQTVPTDSQIN-EMIARSPEEF 2227
Query: 478 QETVHDVPSLQEVNRMI---ARSEDEVELFDQMDEEFGWI-EEMTRYDQVPKWLRASTKE 533
+ + E+++ A + E + Q DE WI +E+ D + L S K
Sbjct: 2228 ELYENMDKERMEIDQKKWDEAGKKGEAKRLSQEDEIPSWITKEVELGDDLSFVLNQSIKP 2287
Query: 534 VNATIANLSKKPS--KNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEA 591
+ SKK +N L I ++SG+I+ RK + + DD+ S +
Sbjct: 2288 GS------SKKSLDLENELQIRKI-LESGKIK--RKTANNNAMISEFFDDDDDGSSSSSS 2338
Query: 592 SSD 594
SD
Sbjct: 2339 DSD 2341
Score = 69 (29.3 bits), Expect = 1.4e-75, Sum P(3) = 1.4e-75
Identities = 30/137 (21%), Positives = 56/137 (40%)
Query: 925 LDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFS-HEVRSEARKVHDLFFDLLKI 983
+D++ I +R+ +++ + + V M A Q Y S EV +A + +LF +L
Sbjct: 2591 IDMKTIKERIVGAKFSNPLSFAASVNSMFYNA-QIYNQSGSEVFEDAVYLQNLFTELFNK 2649
Query: 984 AFPDTDFREARSALSFTGPLSTSVSTPSPRQTTVGQSKRHKIINEMEXXXXXXXXXXXXX 1043
FP+ + LS P S ++ + + V K I+E +
Sbjct: 2650 LFPNNQLPKPEPPLS---PTSLAIQQATVKDQIV---KDQLDISEHQDKSNSADQSSTTS 2703
Query: 1044 XVPVSEDSRIRVQIPQK 1060
+ S+ + I Q PQ+
Sbjct: 2704 TIEQSQPT-ITQQSPQQ 2719
Score = 40 (19.1 bits), Expect = 1.4e-75, Sum P(3) = 1.4e-75
Identities = 33/171 (19%), Positives = 55/171 (32%)
Query: 553 SNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPVQXXXXXXXXXX 612
+N+ V + KR Y + ++ DD+ E E D + PV+
Sbjct: 2407 NNVSVVATTPSRTNKRKELESNYSDEEDDDDDADEEDEEDEDFQR--PVRSKKRAKVAAS 2464
Query: 613 XXXYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEAXXXXXXXXXRRLT 672
+ + K S G GG D S N+ + + + +
Sbjct: 2465 KKPSASSKKQEKEKKANSNGGGGGGGGGDD----SSNSNPSTPLTPSSSSSSSITAQ--P 2518
Query: 673 QIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSG 723
+ SP SP K A RP K+ E E+ + + D + G
Sbjct: 2519 PLPSP-SPVK----KAGRGRPAGTMKKKISENEQKYLQIWDAIRADQDEEG 2564
Score = 39 (18.8 bits), Expect = 1.9e-72, Sum P(3) = 1.9e-72
Identities = 16/114 (14%), Positives = 45/114 (39%)
Query: 702 DELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQ--VLQPKIKRKRSIRVRPRHTVERP 759
D++ + ++ +S H D S + E Q + Q +++ + +P+ ++
Sbjct: 2677 DQIVKDQLDIS--EHQDKSNSADQSSTTSTIEQSQPTITQQSPQQQPQQQPQPQQQQQQQ 2734
Query: 760 EERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSS 813
+++ + ++ +D T T++ + + N + S P+S
Sbjct: 2735 QQQQQQQQQKPQQQQAIQSPNVDKNNSTTTTTSTKLLNNSKGNHNNNSLSPPAS 2788
Score = 38 (18.4 bits), Expect = 2.2e-75, Sum P(3) = 2.2e-75
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 714 DSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRS 747
+S+ ++ D ++ EDE +P +KR+
Sbjct: 2426 ESNYSDEEDDDDDADEEDEEDEDFQRPVRSKKRA 2459
Score = 38 (18.4 bits), Expect = 2.5e-72, Sum P(3) = 2.5e-72
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 782 DNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRN 818
+N Y + + + + H + +P+ K R N
Sbjct: 3185 NNNYNSNHNNNNQYQHHSYQQQQHQQRHQPNKKQRFN 3221
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 775 (277.9 bits), Expect = 2.1e-75, Sum P(2) = 2.1e-75
Identities = 207/564 (36%), Positives = 297/564 (52%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W E KW PSV I Y G R L Q + + KFNVL+TTYE+I+ D+ L+K+
Sbjct: 769 LSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIKDKHILAKI 827
Query: 61 DWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE RMK+ L + L+ Y RR+LLTGTPLQN P +F
Sbjct: 828 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF 887
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE L
Sbjct: 888 KSCSTFEQWFNAPFAMTG--ERVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVESQL 942
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M+
Sbjct: 943 PEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGA-------KTLMNTIMQ 995
Query: 240 LRKTCNHPLL---------NYPYFSD--LSKDFLVKSCGKLWILDRILIKLQRTGHRVLL 288
LRK CNHP + + +S+ ++ L ++ GK +LDRIL KL+ T HRVLL
Sbjct: 996 LRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLL 1055
Query: 289 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348
F MT L+ I+E+Y +R +Y R+DGTT EDR + + FN S FIFLLS RA G
Sbjct: 1056 FCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGL 1115
Query: 349 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK-- 403
GLNLQ+ADTV+I+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1116 GLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1175
Query: 404 ---EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH 460
+ ++ G D + + ++ +I N ++ ++ DE +N Q
Sbjct: 1176 LNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLN-----QMIAR 1229
Query: 461 EERRMTLETLLHDEERYQETVHDV---PSLQEVNRM---IARSEDEVELFDQMDEE---F 511
E L + D +R +E + P L E + + I + + EVE +EE F
Sbjct: 1230 REEEFDLFMRM-DMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIF 1288
Query: 512 GWIEEMTR---YDQV---PKWLRA 529
G R Y +WLRA
Sbjct: 1289 GRGSRQRRDVDYSDALTEKQWLRA 1312
Score = 58 (25.5 bits), Expect = 2.1e-75, Sum P(2) = 2.1e-75
Identities = 18/73 (24%), Positives = 30/73 (41%)
Query: 887 SKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELV 946
S+L+ G Q+ + L R E Y + D +KI +R+ +Y + +L
Sbjct: 1394 SQLEIEGNSSGRQLSEVFIQLPSRKELPEYYELIRKPV-DFKKIKERIRNHKYRSLGDLE 1452
Query: 947 SDVQFMLKGAMQF 959
DV + A F
Sbjct: 1453 KDVMLLCHNAQTF 1465
Score = 45 (20.9 bits), Expect = 5.0e-74, Sum P(2) = 5.0e-74
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 563 ETERKRGPKGKKYPNYKEVDDEIGEY-SEASSDE 595
E R +G KGKK PN + + ++ S+ DE
Sbjct: 1530 EKGRDKG-KGKKRPNRGKAKPVVSDFDSDEEQDE 1562
Score = 40 (19.1 bits), Expect = 1.7e-73, Sum P(2) = 1.7e-73
Identities = 19/88 (21%), Positives = 34/88 (38%)
Query: 787 AQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMP--G 844
A+ + E ++ ESN ++ E S+S KI K G+ P G
Sbjct: 1486 ARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPNRG 1545
Query: 845 HTEDAADHF---KESWDGKIANASGSSN 869
+ F +E + + + ASG+ +
Sbjct: 1546 KAKPVVSDFDSDEEQDENEQSEASGTDD 1573
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 775 (277.9 bits), Expect = 2.3e-75, Sum P(2) = 2.3e-75
Identities = 207/564 (36%), Positives = 297/564 (52%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W E KW PSV I Y G R L Q + + KFNVL+TTYE+I+ D+ L+K+
Sbjct: 792 LSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIKDKHILAKI 850
Query: 61 DWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE RMK+ L + L+ Y RR+LLTGTPLQN P +F
Sbjct: 851 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF 910
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE L
Sbjct: 911 KSCSTFEQWFNAPFAMTG--ERVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVESQL 965
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M+
Sbjct: 966 PEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGA-------KTLMNTIMQ 1018
Query: 240 LRKTCNHPLL---------NYPYFSD--LSKDFLVKSCGKLWILDRILIKLQRTGHRVLL 288
LRK CNHP + + +S+ ++ L ++ GK +LDRIL KL+ T HRVLL
Sbjct: 1019 LRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLL 1078
Query: 289 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348
F MT L+ I+E+Y +R +Y R+DGTT EDR + + FN S FIFLLS RA G
Sbjct: 1079 FCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGL 1138
Query: 349 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK-- 403
GLNLQ+ADTV+I+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1139 GLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1198
Query: 404 ---EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH 460
+ ++ G D + + ++ +I N ++ ++ DE +N Q
Sbjct: 1199 LNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLN-----QMIAR 1252
Query: 461 EERRMTLETLLHDEERYQETVHDV---PSLQEVNRM---IARSEDEVELFDQMDEE---F 511
E L + D +R +E + P L E + + I + + EVE +EE F
Sbjct: 1253 REEEFDLFMRM-DMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIF 1311
Query: 512 GWIEEMTR---YDQV---PKWLRA 529
G R Y +WLRA
Sbjct: 1312 GRGSRQRRDVDYSDALTEKQWLRA 1335
Score = 58 (25.5 bits), Expect = 2.3e-75, Sum P(2) = 2.3e-75
Identities = 18/73 (24%), Positives = 30/73 (41%)
Query: 887 SKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELV 946
S+L+ G Q+ + L R E Y + D +KI +R+ +Y + +L
Sbjct: 1417 SQLEIEGNSSGRQLSEVFIQLPSRKELPEYYELIRKPV-DFKKIKERIRNHKYRSLGDLE 1475
Query: 947 SDVQFMLKGAMQF 959
DV + A F
Sbjct: 1476 KDVMLLCHNAQTF 1488
Score = 42 (19.8 bits), Expect = 1.1e-73, Sum P(2) = 1.1e-73
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 563 ETERKRGPKGKKYPNYKEVDDEIGEY-SEASSDE 595
E R G KGKK PN + + ++ S+ DE
Sbjct: 1553 EKGRDTG-KGKKRPNRGKAKPVVSDFDSDEEQDE 1585
Score = 42 (19.8 bits), Expect = 1.1e-73, Sum P(2) = 1.1e-73
Identities = 19/88 (21%), Positives = 35/88 (39%)
Query: 787 AQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMP--G 844
A+ + E ++ ESN ++ E S++ KI K TG+ P G
Sbjct: 1509 ARQKIAKEEESEEESNEEEEEEDEEESEAEAKSVKVKIKLNKKEEKGRDTGKGKKRPNRG 1568
Query: 845 HTEDAADHF---KESWDGKIANASGSSN 869
+ F +E + + + ASG+ +
Sbjct: 1569 KAKPVVSDFDSDEEQDENEQSEASGTDD 1596
>WB|WBGene00016868 [details] [associations]
symbol:C52B9.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:FO080644 PIR:T28937 RefSeq:NP_508736.1
ProteinModelPortal:Q22944 SMR:Q22944 STRING:Q22944 PaxDb:Q22944
EnsemblMetazoa:C52B9.8 GeneID:180705 KEGG:cel:CELE_C52B9.8
UCSC:C52B9.8 CTD:180705 WormBase:C52B9.8 InParanoid:Q22944
NextBio:910548 Uniprot:Q22944
Length = 1336
Score = 766 (274.7 bits), Expect = 2.9e-75, Sum P(2) = 2.9e-75
Identities = 208/591 (35%), Positives = 314/591 (53%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
WQ+E KW +V I Y G K+ R ++F + + KFNVL+TT+E+++ +++ L K+ WK
Sbjct: 430 WQNEFDKWAANVHLIAYKGPKETR-KVFEPIIKSGKFNVLLTTFEYVIREKALLGKLRWK 488
Query: 64 YIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNR 122
Y+IIDE R+K++ L L+ R++CQRRLL+TGTPLQN P +F +
Sbjct: 489 YMIIDEGHRLKNQHCKLTEMLNTRFQCQRRLLITGTPLQNKLPELWALLNFLLPSIFSSC 548
Query: 123 KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPK 182
F WF+ PF G L E+ ++II RLH++L PF+LRR ++VE LP K
Sbjct: 549 STFEQWFNAPFATTGEKVE-----LTQEETMLIIRRLHKVLRPFLLRRLKKEVESELPDK 603
Query: 183 VSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 242
+ V+RC MSA+Q +Y ++ G L D K K+L N + LRK
Sbjct: 604 MEFVVRCDMSALQKVLYKHMQK-GLLL----DGKTNTGS---------KSLRNTMIHLRK 649
Query: 243 TCNHPLLNYPYFSDLSKDF----------LVKSCGKLWILDRILIKLQRTGHRVLLFSTM 292
CNHP L + + ++F L + GKL +L RIL KLQ TGHRVL+F M
Sbjct: 650 LCNHPFL-FENVEESCRNFWDARFISAVDLYRVSGKLELLSRILPKLQATGHRVLMFFQM 708
Query: 293 TKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNL 352
T ++ I+E++L + Y R+DG+T ++R + + FN+ +S+ F+F+LS RA G GLNL
Sbjct: 709 TSMMTIVEDFLAGGTIQYLRLDGSTKPDERGALLDKFNAPNSEYFLFMLSTRAGGLGLNL 768
Query: 353 QSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGT 412
Q+ADTVII+D D NP + QA RAHRIGQK EV+V + I+++ E+++ +
Sbjct: 769 QTADTVIIFDSDWNPHQDMQAQDRAHRIGQKAEVRVFRL------ITANSVEEKILAAAR 822
Query: 413 VDLEDD----LAGK--DRYIGSIEGLIRNNI--QQYKIDMADEVINAGRFDQRTTHEERR 464
L D AGK +R G+ I NI + + + +EV N + + E
Sbjct: 823 YKLNVDEKVIQAGKFDNRSTGAERREILENIIKTENESEEDEEVPNDEDINDILSRSEEE 882
Query: 465 MTLETLLHDEERYQ-ETVHDV-PSL---QEVNRMIARSEDEVELFDQMDEEFGWIEEMTR 519
L + D+ER++ E P L E+ R I R+ DE + ++ EE G +
Sbjct: 883 FELFQKM-DQERFENEQAQKAKPRLVGEDEIPRDILRAADETDYIEKAKEE-GRVP---- 936
Query: 520 YDQVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGP 570
Y +V R + +EV+ + +S LF + D+ TE + P
Sbjct: 937 YLEVMPGSRRTRREVDYSADTMSDDKFLEKLFDED---DTTSARTEEEPNP 984
Score = 63 (27.2 bits), Expect = 2.9e-75, Sum P(2) = 2.9e-75
Identities = 33/178 (18%), Positives = 72/178 (40%)
Query: 728 DRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSL-LPFQMDNKYP 786
D DE +++ + K ++++R + +E+S + +G S+ L D +P
Sbjct: 1147 DSDESSEKKKKKHKHDSDSALKLREGSPLSVDKEKSPMKIRIGQGQPSISLAANEDKNHP 1206
Query: 787 A-QLRTDTEMKAHG-ESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTG------R 838
+L+ + + E++ + D+ EP + ++ K + K + K +
Sbjct: 1207 PIKLKLNVKFNMPSQETDGSKKDKKEPHKEKEKDKEKEKEEDKGKEKEKHKDKDKDKEHK 1266
Query: 839 LNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKE 896
TE+ KE+ ++ AK+ + + R+ K Q+R+EKE
Sbjct: 1267 KKSREDETEEERRARKEA--KRLKRQKEEQEDDAKLQEKLARKAAK---KEQKRLEKE 1319
Score = 52 (23.4 bits), Expect = 4.1e-74, Sum P(2) = 4.1e-74
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 729 RDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDT 767
++E ED+ LQ K+ RK + + + R +E+ + S T T
Sbjct: 1291 KEEQEDDAKLQEKLARKAAKKEQKR--LEKEKSESSTGT 1327
Score = 48 (22.0 bits), Expect = 1.1e-73, Sum P(2) = 1.1e-73
Identities = 26/116 (22%), Positives = 50/116 (43%)
Query: 700 MPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERP 759
MP + +G + H + ++ + D+G++++ + K K K + + R E
Sbjct: 1218 MPSQETDGSKKDKKEPHKEKEKDKEKEKEEDKGKEKEKHKDKDKDKEH-KKKSRED-ETE 1275
Query: 760 EERSCTDTPLHRGDSSLLPFQMDNKYP-AQLRTDTEMKA-HGESNSLRHDQSEPSS 813
EER R ++ L Q + + A+L+ KA E L ++SE S+
Sbjct: 1276 EERRA------RKEAKRLKRQKEEQEDDAKLQEKLARKAAKKEQKRLEKEKSESST 1325
Score = 41 (19.5 bits), Expect = 5.9e-73, Sum P(2) = 5.9e-73
Identities = 32/160 (20%), Positives = 66/160 (41%)
Query: 682 KFGSLSALEARPGS-LS---KRMPDELEEGE----IAVSGDSHMDHQQSGSWTHDRDEGE 733
K S SAL+ R GS LS ++ P ++ G+ I+++ + +H + +
Sbjct: 1160 KHDSDSALKLREGSPLSVDKEKSPMKIRIGQGQPSISLAANEDKNHPPIKLKLNVKFNMP 1219
Query: 734 DEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDT 793
++ K +K + + + + EE + H+ + K + T+
Sbjct: 1220 SQETDGSKKDKKEPHKEKEKDKEKEKEEDKGKEKEKHKDKDK---DKEHKKKSREDETEE 1276
Query: 794 EMKAHGESNSLRH--DQSEPSSKSRRNLPSRKIANAPKSR 831
E +A E+ L+ ++ E +K + L +RK A + R
Sbjct: 1277 ERRARKEAKRLKRQKEEQEDDAKLQEKL-ARKAAKKEQKR 1315
Score = 40 (19.1 bits), Expect = 7.6e-73, Sum P(2) = 7.6e-73
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 1082 HPGELVICKKKRKDREK 1098
HP E KKK K++EK
Sbjct: 1059 HPKEKEKEKKKEKEQEK 1075
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 775 (277.9 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
Identities = 207/564 (36%), Positives = 297/564 (52%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W E KW PSV I Y G R L Q + + KFNVL+TTYE+I+ D+ L+K+
Sbjct: 767 LSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIKDKHILAKI 825
Query: 61 DWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE RMK+ L + L+ Y RR+LLTGTPLQN P +F
Sbjct: 826 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF 885
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE L
Sbjct: 886 KSCSTFEQWFNAPFAMTG--ERVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVESQL 940
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M+
Sbjct: 941 PEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGA-------KTLMNTIMQ 993
Query: 240 LRKTCNHPLL---------NYPYFSD--LSKDFLVKSCGKLWILDRILIKLQRTGHRVLL 288
LRK CNHP + + +S+ ++ L ++ GK +LDRIL KL+ T HRVLL
Sbjct: 994 LRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLL 1053
Query: 289 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348
F MT L+ I+E+Y +R +Y R+DGTT EDR + + FN S FIFLLS RA G
Sbjct: 1054 FCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGL 1113
Query: 349 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK-- 403
GLNLQ+ADTV+I+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1114 GLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1173
Query: 404 ---EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH 460
+ ++ G D + + ++ +I N ++ ++ DE +N Q
Sbjct: 1174 LNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLN-----QMIAR 1227
Query: 461 EERRMTLETLLHDEERYQETVHDV---PSLQEVNRM---IARSEDEVELFDQMDEE---F 511
E L + D +R +E + P L E + + I + + EVE +EE F
Sbjct: 1228 REEEFDLFMRM-DMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIF 1286
Query: 512 GWIEEMTR---YDQV---PKWLRA 529
G R Y +WLRA
Sbjct: 1287 GRGSRQRRDVDYSDALTEKQWLRA 1310
Score = 56 (24.8 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
Identities = 16/66 (24%), Positives = 27/66 (40%)
Query: 894 EKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 953
+ G Q+ + L R E Y + D +KI +R+ +Y + +L DV +
Sbjct: 1381 DSSGRQLSEVFIQLPSRKELPEYYELIRKPV-DFKKIKERIRNHKYRSLGDLEKDVMLLC 1439
Query: 954 KGAMQF 959
A F
Sbjct: 1440 HNAQTF 1445
Score = 45 (20.9 bits), Expect = 4.6e-74, Sum P(2) = 4.6e-74
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 563 ETERKRGPKGKKYPNYKEVDDEIGEY-SEASSDE 595
E R +G KGKK PN + + ++ S+ DE
Sbjct: 1510 EKGRDKG-KGKKRPNRGKAKPVVSDFDSDEEQDE 1542
Score = 40 (19.1 bits), Expect = 1.6e-73, Sum P(2) = 1.6e-73
Identities = 19/88 (21%), Positives = 34/88 (38%)
Query: 787 AQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMP--G 844
A+ + E ++ ESN ++ E S+S KI K G+ P G
Sbjct: 1466 ARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPNRG 1525
Query: 845 HTEDAADHF---KESWDGKIANASGSSN 869
+ F +E + + + ASG+ +
Sbjct: 1526 KAKPVVSDFDSDEEQDENEQSEASGTDD 1553
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 775 (277.9 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
Identities = 207/564 (36%), Positives = 297/564 (52%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W E KW PSV I Y G R L Q + + KFNVL+TTYE+I+ D+ L+K+
Sbjct: 769 LSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIKDKHILAKI 827
Query: 61 DWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE RMK+ L + L+ Y RR+LLTGTPLQN P +F
Sbjct: 828 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF 887
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE L
Sbjct: 888 KSCSTFEQWFNAPFAMTG--ERVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVESQL 942
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M+
Sbjct: 943 PEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGA-------KTLMNTIMQ 995
Query: 240 LRKTCNHPLL---------NYPYFSD--LSKDFLVKSCGKLWILDRILIKLQRTGHRVLL 288
LRK CNHP + + +S+ ++ L ++ GK +LDRIL KL+ T HRVLL
Sbjct: 996 LRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLL 1055
Query: 289 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348
F MT L+ I+E+Y +R +Y R+DGTT EDR + + FN S FIFLLS RA G
Sbjct: 1056 FCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGL 1115
Query: 349 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK-- 403
GLNLQ+ADTV+I+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1116 GLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1175
Query: 404 ---EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH 460
+ ++ G D + + ++ +I N ++ ++ DE +N Q
Sbjct: 1176 LNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLN-----QMIAR 1229
Query: 461 EERRMTLETLLHDEERYQETVHDV---PSLQEVNRM---IARSEDEVELFDQMDEE---F 511
E L + D +R +E + P L E + + I + + EVE +EE F
Sbjct: 1230 REEEFDLFMRM-DMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIF 1288
Query: 512 GWIEEMTR---YDQV---PKWLRA 529
G R Y +WLRA
Sbjct: 1289 GRGSRQRRDVDYSDALTEKQWLRA 1312
Score = 56 (24.8 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
Identities = 16/66 (24%), Positives = 27/66 (40%)
Query: 894 EKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 953
+ G Q+ + L R E Y + D +KI +R+ +Y + +L DV +
Sbjct: 1383 DSSGRQLSEVFIQLPSRKELPEYYELIRKPV-DFKKIKERIRNHKYRSLGDLEKDVMLLC 1441
Query: 954 KGAMQF 959
A F
Sbjct: 1442 HNAQTF 1447
Score = 45 (20.9 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 563 ETERKRGPKGKKYPNYKEVDDEIGEY-SEASSDE 595
E R +G KGKK PN + + ++ S+ DE
Sbjct: 1512 EKGRDKG-KGKKRPNRGKAKPVVSDFDSDEEQDE 1544
Score = 40 (19.1 bits), Expect = 1.6e-73, Sum P(2) = 1.6e-73
Identities = 19/88 (21%), Positives = 34/88 (38%)
Query: 787 AQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMP--G 844
A+ + E ++ ESN ++ E S+S KI K G+ P G
Sbjct: 1468 ARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPNRG 1527
Query: 845 HTEDAADHF---KESWDGKIANASGSSN 869
+ F +E + + + ASG+ +
Sbjct: 1528 KAKPVVSDFDSDEEQDENEQSEASGTDD 1555
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 775 (277.9 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
Identities = 207/564 (36%), Positives = 297/564 (52%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W E KW PSV I Y G R L Q + + KFNVL+TTYE+I+ D+ L+K+
Sbjct: 769 LSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIKDKHILAKI 827
Query: 61 DWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE RMK+ L + L+ Y RR+LLTGTPLQN P +F
Sbjct: 828 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF 887
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE L
Sbjct: 888 KSCSTFEQWFNAPFAMTG--ERVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVESQL 942
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M+
Sbjct: 943 PEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGA-------KTLMNTIMQ 995
Query: 240 LRKTCNHPLL---------NYPYFSD--LSKDFLVKSCGKLWILDRILIKLQRTGHRVLL 288
LRK CNHP + + +S+ ++ L ++ GK +LDRIL KL+ T HRVLL
Sbjct: 996 LRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLL 1055
Query: 289 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348
F MT L+ I+E+Y +R +Y R+DGTT EDR + + FN S FIFLLS RA G
Sbjct: 1056 FCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGL 1115
Query: 349 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK-- 403
GLNLQ+ADTV+I+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1116 GLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1175
Query: 404 ---EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH 460
+ ++ G D + + ++ +I N ++ ++ DE +N Q
Sbjct: 1176 LNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLN-----QMIAR 1229
Query: 461 EERRMTLETLLHDEERYQETVHDV---PSLQEVNRM---IARSEDEVELFDQMDEE---F 511
E L + D +R +E + P L E + + I + + EVE +EE F
Sbjct: 1230 REEEFDLFMRM-DMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIF 1288
Query: 512 GWIEEMTR---YDQV---PKWLRA 529
G R Y +WLRA
Sbjct: 1289 GRGSRQRRDVDYSDALTEKQWLRA 1312
Score = 56 (24.8 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
Identities = 16/66 (24%), Positives = 27/66 (40%)
Query: 894 EKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 953
+ G Q+ + L R E Y + D +KI +R+ +Y + +L DV +
Sbjct: 1383 DSSGRQLSEVFIQLPSRKELPEYYELIRKPV-DFKKIKERIRNHKYRSLGDLEKDVMLLC 1441
Query: 954 KGAMQF 959
A F
Sbjct: 1442 HNAQTF 1447
Score = 45 (20.9 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 563 ETERKRGPKGKKYPNYKEVDDEIGEY-SEASSDE 595
E R +G KGKK PN + + ++ S+ DE
Sbjct: 1512 EKGRDKG-KGKKRPNRGKAKPVVSDFDSDEEQDE 1544
Score = 40 (19.1 bits), Expect = 1.6e-73, Sum P(2) = 1.6e-73
Identities = 19/88 (21%), Positives = 34/88 (38%)
Query: 787 AQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMP--G 844
A+ + E ++ ESN ++ E S+S KI K G+ P G
Sbjct: 1468 ARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKVKIKLNKKDEKGRDKGKGKKRPNRG 1527
Query: 845 HTEDAADHF---KESWDGKIANASGSSN 869
+ F +E + + + ASG+ +
Sbjct: 1528 KAKPVVSDFDSDEEQDENEQSEASGTDD 1555
>UNIPROTKB|F1MJ46 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 GO:GO:0035887
IPI:IPI00693529 OMA:HKPMESM EMBL:DAAA02019479 EMBL:DAAA02019480
EMBL:DAAA02019481 Ensembl:ENSBTAT00000025598 ArrayExpress:F1MJ46
Uniprot:F1MJ46
Length = 1604
Score = 760 (272.6 bits), Expect = 3.7e-75, Sum P(3) = 3.7e-75
Identities = 197/535 (36%), Positives = 284/535 (53%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W E KW PSV + Y G+ R R F ++ + KFNVL+TTYE+I+ D+ L+K+
Sbjct: 807 LSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVPQLRSGKFNVLLTTYEYIIKDKHILAKI 865
Query: 61 DWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE RMK+ L + L+ Y RRLLLTGTPLQN P +F
Sbjct: 866 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIF 925
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE L
Sbjct: 926 KSCSTFEQWFNAPFAMTG--EKVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVEAQL 980
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M+
Sbjct: 981 PEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGT-------KTLMNTIMQ 1033
Query: 240 LRKTCNHPLLNYPYFSDLSKDF-----------LVKSCGKLWILDRILIKLQRTGHRVLL 288
LRK CNHP + S+ L ++ GK +LDRIL KL+ T H+VLL
Sbjct: 1034 LRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRATNHKVLL 1093
Query: 289 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348
F MT L+ I+E+Y +R Y R+DGTT EDR ++ FN S+ FI LLS RA G
Sbjct: 1094 FCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDR-GMLLTFNEPGSEYFI-LLSTRAGGL 1151
Query: 349 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK-- 403
GLNLQSADTVII+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1152 GLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1211
Query: 404 ---EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH 460
+ ++ G D + + ++ + ++ + Q + DEV + +Q
Sbjct: 1212 LNVDQKVIQAGMFDQKSSSHERRAFL---QAILEHEEQD---EEEDEVPDDETVNQMIAR 1265
Query: 461 EERRMTLETLLHDEERYQETVHDV--PSLQEVNRM---IARSEDEVELFDQMDEE 510
E L + + R +E + P L E + + I + + EVE +EE
Sbjct: 1266 HEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEE 1320
Score = 62 (26.9 bits), Expect = 3.7e-75, Sum P(3) = 3.7e-75
Identities = 17/83 (20%), Positives = 36/83 (43%)
Query: 878 IQRRCKNVISK-LQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR 936
+ ++ K ++ ++ + G Q+ + L R E Y + D +KI +R+
Sbjct: 1415 LTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPV-DFKKIKERIRN 1473
Query: 937 LEYNGVMELVSDVQFMLKGAMQF 959
+Y + +L DV + + A F
Sbjct: 1474 HKYRSLNDLEKDVMLLCQNAQTF 1496
Score = 54 (24.1 bits), Expect = 3.7e-75, Sum P(3) = 3.7e-75
Identities = 20/84 (23%), Positives = 39/84 (46%)
Query: 698 KRMPDELEEGEIAVSGDSH---MDHQQS---GSWTHDRDEGEDEQVLQPKIKRKRSIRVR 751
+R+ E EE ++ G H +D+ S W +EG E++ + ++++K+S R R
Sbjct: 1312 ERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEI-EEEVRQKKSSRKR 1370
Query: 752 PRHTVERPEERSCTDTPLHRGDSS 775
R + P + + + D S
Sbjct: 1371 KRDSDAGPSTPTTSTRSRDKDDES 1394
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 782 (280.3 bits), Expect = 3.9e-75, Sum P(2) = 3.9e-75
Identities = 215/609 (35%), Positives = 316/609 (51%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W E KW PSV I Y G R L Q + + KFNVL+TTYE+I+ D+ L+K+
Sbjct: 759 LSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIKDKHILAKI 817
Query: 61 DWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE RMK+ L + L+ Y RR+LLTGTPLQN P +F
Sbjct: 818 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF 877
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE L
Sbjct: 878 KSCSTFEQWFNAPFAMTG--ERVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVESQL 932
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M+
Sbjct: 933 PEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGA-------KTLMNTIMQ 985
Query: 240 LRKTCNHPLL---------NYPYFSD--LSKDFLVKSCGKLWILDRILIKLQRTGHRVLL 288
LRK CNHP + + +S+ ++ L ++ GK +LDRIL KL+ T HRVLL
Sbjct: 986 LRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLL 1045
Query: 289 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348
F MT L+ I+E+Y +R +Y R+DGTT EDR + + FN S FIFLLS RA G
Sbjct: 1046 FCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGL 1105
Query: 349 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK-- 403
GLNLQ+ADTVII+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1106 GLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1165
Query: 404 ---EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH 460
+ ++ G D + + ++ +I N ++ ++ DE +N Q
Sbjct: 1166 LNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLN-----QMIAR 1219
Query: 461 EERRMTLETLLHDEERYQETVHDV---PSLQEVNRM---IARSEDEVELFDQMDEE---F 511
E L + D +R +E + P L E + + I + + EVE +EE F
Sbjct: 1220 REEEFDLFMRM-DMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIF 1278
Query: 512 GWIEEMTR---YDQV---PKWLRASTKEVNATIANLSKKPS-KNILFGSNIGVDSGEIET 564
G R Y +WLRA + + + ++ K N+ DSG+ +
Sbjct: 1279 GRGSRQRRDVDYSDALTEKQWLRAIE---DGNLEEMEEEVRLKKRKRRRNVDKDSGKEDG 1335
Query: 565 ERKRGPKGK 573
E+ + +G+
Sbjct: 1336 EKAKKRRGR 1344
Score = 46 (21.3 bits), Expect = 3.9e-75, Sum P(2) = 3.9e-75
Identities = 17/81 (20%), Positives = 38/81 (46%)
Query: 792 DTEMKAHGESNSLRHDQSEPSSKSRR---NLPSRKIANAPKSRASLKTGRLNCMPGHTED 848
++E +++ + + ++SE SKS + L + + K + + R P ++D
Sbjct: 1467 ESEDESNDDEDEDDEEESESESKSVKVKIKLNKKDEKSREKGKGKKRQSRAKAKPVVSDD 1526
Query: 849 AADHFKESWDGKIANASGSSN 869
+D ++ D + ASGS +
Sbjct: 1527 DSDEDQDENDQ--SEASGSDD 1545
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 775 (277.9 bits), Expect = 7.3e-75, Sum P(2) = 7.3e-75
Identities = 207/564 (36%), Positives = 297/564 (52%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W E KW PSV I Y G R L Q + + KFNVL+TTYE+I+ D+ L+K+
Sbjct: 790 LSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIKDKHILAKI 848
Query: 61 DWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE RMK+ L + L+ Y RR+LLTGTPLQN P +F
Sbjct: 849 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF 908
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE L
Sbjct: 909 KSCSTFEQWFNAPFAMTG--ERVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVESQL 963
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M+
Sbjct: 964 PEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGA-------KTLMNTIMQ 1016
Query: 240 LRKTCNHPLL---------NYPYFSD--LSKDFLVKSCGKLWILDRILIKLQRTGHRVLL 288
LRK CNHP + + +S+ ++ L ++ GK +LDRIL KL+ T HRVLL
Sbjct: 1017 LRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLL 1076
Query: 289 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348
F MT L+ I+E+Y +R +Y R+DGTT EDR + + FN S FIFLLS RA G
Sbjct: 1077 FCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGL 1136
Query: 349 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK-- 403
GLNLQ+ADTV+I+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1137 GLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1196
Query: 404 ---EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH 460
+ ++ G D + + ++ +I N ++ ++ DE +N Q
Sbjct: 1197 LNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLN-----QMIAR 1250
Query: 461 EERRMTLETLLHDEERYQETVHDV---PSLQEVNRM---IARSEDEVELFDQMDEE---F 511
E L + D +R +E + P L E + + I + + EVE +EE F
Sbjct: 1251 REEEFDLFMRM-DMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIF 1309
Query: 512 GWIEEMTR---YDQV---PKWLRA 529
G R Y +WLRA
Sbjct: 1310 GRGSRQRRDVDYSDALTEKQWLRA 1333
Score = 53 (23.7 bits), Expect = 7.3e-75, Sum P(2) = 7.3e-75
Identities = 15/66 (22%), Positives = 27/66 (40%)
Query: 894 EKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 953
+ G Q+ + L R + Y + D +KI +R+ +Y + +L DV +
Sbjct: 1404 DSSGRQLSEVFIQLPSRKDLPEYYELIRKPV-DFKKIKERIRNHKYRSLGDLEKDVMLLC 1462
Query: 954 KGAMQF 959
A F
Sbjct: 1463 HNAQTF 1468
Score = 49 (22.3 bits), Expect = 1.9e-74, Sum P(2) = 1.9e-74
Identities = 21/88 (23%), Positives = 34/88 (38%)
Query: 787 AQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMP--G 844
A+ + E ++ ESN + E S+S KI K TG+ P G
Sbjct: 1489 ARQKIAKEEESEEESNEEEEEDDEEESESEAKSVKVKIKLNKKEEKGRDTGKGKKRPNRG 1548
Query: 845 HTEDAADHF---KESWDGKIANASGSSN 869
+ F +E + + + ASG+ N
Sbjct: 1549 KAKPVVSDFDSDEEQEENEQSEASGTDN 1576
Score = 44 (20.5 bits), Expect = 6.5e-74, Sum P(2) = 6.5e-74
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 563 ETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERN 597
E R G KGKK PN + + ++ E N
Sbjct: 1533 EKGRDTG-KGKKRPNRGKAKPVVSDFDSDEEQEEN 1566
>CGD|CAL0005444 [details] [associations]
symbol:SNF2 species:5476 "Candida albicans" [GO:0016514
"SWI/SNF complex" evidence=IPI] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IEA] [GO:0031492 "nucleosomal DNA
binding" evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:1900430 "positive regulation of
filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900442 "positive regulation of filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] [GO:0042766 "nucleosome mobilization" evidence=IEA]
[GO:0005987 "sucrose catabolic process" evidence=IEA] [GO:1900231
"regulation of single-species biofilm formation on inanimate
substrate" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042148 "strand invasion"
evidence=IEA] [GO:0044109 "cellular alcohol catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0031496 "positive regulation of mating type
switching" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IEA] [GO:0036244 "cellular response to
neutral pH" evidence=IMP] [GO:0071216 "cellular response to biotic
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 781 (280.0 bits), Expect = 9.7e-75, P = 9.7e-75
Identities = 207/618 (33%), Positives = 329/618 (53%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W E KW PS+ I Y G +QR ++ ++ F +++TT+E+++ D+ L ++ W
Sbjct: 845 WNLEFEKWAPSIKKITYKGTPNQR-KVMQHDIRTGNFQLVLTTFEYVIKDKGLLGRIKWV 903
Query: 64 YIIIDEAQRMKDRESVLARDLDR-YRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNR 122
++IIDE RMK+ S L+ L + Y RL+LTGTPLQN+ P++F++
Sbjct: 904 HMIIDEGHRMKNANSKLSETLTQNYHSDYRLILTGTPLQNNLPELWALLNFVLPKIFNSV 963
Query: 123 KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPK 182
K+F +WF+ PF G D L E+ +++I RLH++L PF+LRR +DVE LP K
Sbjct: 964 KSFDEWFNTPFANTG---GQDKIELTEEETLLVIRRLHKVLRPFLLRRLKKDVEKDLPNK 1020
Query: 183 VSIVLRCRMSAIQSAIYDWIKATGTLRV-DPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 241
V V++C+ SA+QS +Y + L DP + P+ K NN+ M+L+
Sbjct: 1021 VEKVVKCKSSALQSKLYQQMLRYNMLYAGDPANGSV-----PV----TIKNANNQIMQLK 1071
Query: 242 KTCNHPLLNYPYFSDL------SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKL 295
K CNHP + Y +L + D + + GK +LD++L K + TGH+VL+F MT++
Sbjct: 1072 KICNHPFV-YEEVENLINPNIETNDQIWRVAGKFELLDKVLPKFKATGHKVLIFFQMTQI 1130
Query: 296 LDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA 355
++I+E++L++R + Y R+DG T +DR + FN+ DSD F FLLS RA G GLNLQ+A
Sbjct: 1131 MNIMEDFLRFRGMKYMRLDGGTKADDRTDLLKSFNAPDSDYFCFLLSTRAGGLGLNLQTA 1190
Query: 356 DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM--EAVVDKISSHQKEDELRSGGTV 413
DTVII+D D NP + QA RAHRIGQK EV+++ + E V+++ + +L G V
Sbjct: 1191 DTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITENSVEEMILERAHKKLEIDGKV 1250
Query: 414 DLE---DDLAGKDRYIGSIEGLIRNNIQQYK---IDMADEVINAGRFDQRTTHEERRMTL 467
D+ + + + LI ++ + D +E ++ +Q E + +
Sbjct: 1251 IQAGKFDNKSTAEEQEAMLRALIEKEDERRQKGGTDEEEEDLDDDELNQIIARNENELVV 1310
Query: 468 ETLLHDEERYQETVH-DVPS---LQEVNRMIARSEDEVELFDQMD---EEFGWIEEMTRY 520
+ DEERY T + PS +E I + + E ELF + D EE+G R
Sbjct: 1311 FRKM-DEERYLATKNAPYPSRLYTEEELPEIYKIDPE-ELFKKEDVASEEYG---RGARE 1365
Query: 521 DQVPKWLRASTKE--VNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKK--YP 576
++ ++ T+E + +S N N+ + E+E + K+ PKG++ P
Sbjct: 1366 RKILQYDDNLTEEQWLKKIEGMVSDDDDDNDDDDGNVDMSDSEMEAKPKK-PKGRRGRKP 1424
Query: 577 NYKEVDDEIGEYSEASSD 594
V+DE E S+ SD
Sbjct: 1425 KVARVEDE--E-SQTESD 1439
>UNIPROTKB|Q5AM49 [details] [associations]
symbol:SNF2 "Putative uncharacterized protein SNF2"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009405
"pathogenesis" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=IPI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:1900430 "positive regulation of filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900442
"positive regulation of filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 781 (280.0 bits), Expect = 9.7e-75, P = 9.7e-75
Identities = 207/618 (33%), Positives = 329/618 (53%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W E KW PS+ I Y G +QR ++ ++ F +++TT+E+++ D+ L ++ W
Sbjct: 845 WNLEFEKWAPSIKKITYKGTPNQR-KVMQHDIRTGNFQLVLTTFEYVIKDKGLLGRIKWV 903
Query: 64 YIIIDEAQRMKDRESVLARDLDR-YRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNR 122
++IIDE RMK+ S L+ L + Y RL+LTGTPLQN+ P++F++
Sbjct: 904 HMIIDEGHRMKNANSKLSETLTQNYHSDYRLILTGTPLQNNLPELWALLNFVLPKIFNSV 963
Query: 123 KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPK 182
K+F +WF+ PF G D L E+ +++I RLH++L PF+LRR +DVE LP K
Sbjct: 964 KSFDEWFNTPFANTG---GQDKIELTEEETLLVIRRLHKVLRPFLLRRLKKDVEKDLPNK 1020
Query: 183 VSIVLRCRMSAIQSAIYDWIKATGTLRV-DPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 241
V V++C+ SA+QS +Y + L DP + P+ K NN+ M+L+
Sbjct: 1021 VEKVVKCKSSALQSKLYQQMLRYNMLYAGDPANGSV-----PV----TIKNANNQIMQLK 1071
Query: 242 KTCNHPLLNYPYFSDL------SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKL 295
K CNHP + Y +L + D + + GK +LD++L K + TGH+VL+F MT++
Sbjct: 1072 KICNHPFV-YEEVENLINPNIETNDQIWRVAGKFELLDKVLPKFKATGHKVLIFFQMTQI 1130
Query: 296 LDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA 355
++I+E++L++R + Y R+DG T +DR + FN+ DSD F FLLS RA G GLNLQ+A
Sbjct: 1131 MNIMEDFLRFRGMKYMRLDGGTKADDRTDLLKSFNAPDSDYFCFLLSTRAGGLGLNLQTA 1190
Query: 356 DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM--EAVVDKISSHQKEDELRSGGTV 413
DTVII+D D NP + QA RAHRIGQK EV+++ + E V+++ + +L G V
Sbjct: 1191 DTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITENSVEEMILERAHKKLEIDGKV 1250
Query: 414 DLE---DDLAGKDRYIGSIEGLIRNNIQQYK---IDMADEVINAGRFDQRTTHEERRMTL 467
D+ + + + LI ++ + D +E ++ +Q E + +
Sbjct: 1251 IQAGKFDNKSTAEEQEAMLRALIEKEDERRQKGGTDEEEEDLDDDELNQIIARNENELVV 1310
Query: 468 ETLLHDEERYQETVH-DVPS---LQEVNRMIARSEDEVELFDQMD---EEFGWIEEMTRY 520
+ DEERY T + PS +E I + + E ELF + D EE+G R
Sbjct: 1311 FRKM-DEERYLATKNAPYPSRLYTEEELPEIYKIDPE-ELFKKEDVASEEYG---RGARE 1365
Query: 521 DQVPKWLRASTKE--VNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKK--YP 576
++ ++ T+E + +S N N+ + E+E + K+ PKG++ P
Sbjct: 1366 RKILQYDDNLTEEQWLKKIEGMVSDDDDDNDDDDGNVDMSDSEMEAKPKK-PKGRRGRKP 1424
Query: 577 NYKEVDDEIGEYSEASSD 594
V+DE E S+ SD
Sbjct: 1425 KVARVEDE--E-SQTESD 1439
>RGD|1302988 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016514 "SWI/SNF complex"
evidence=ISO] [GO:0030308 "negative regulation of cell growth"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045111 "intermediate filament cytoskeleton" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565 "nBAF
complex" evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OrthoDB:EOG418BMJ IPI:IPI00464435 EMBL:AY643746
RefSeq:NP_001004446.1 UniGene:Rn.94939 ProteinModelPortal:Q6DUH4
SMR:Q6DUH4 STRING:Q6DUH4 GeneID:361745 KEGG:rno:361745
UCSC:RGD:1302988 InParanoid:Q6DUH4 NextBio:677480
Genevestigator:Q6DUH4 Uniprot:Q6DUH4
Length = 1597
Score = 767 (275.1 bits), Expect = 2.5e-74, Sum P(2) = 2.5e-74
Identities = 205/564 (36%), Positives = 295/564 (52%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W E KW PS I Y G R L Q + + KFN L+TTYE+I+ D+ L+K+
Sbjct: 792 LSNWTYEFDKWAPSAVKISYKGTPAMRRSLVPQ-LRSGKFNALLTTYEYIIKDKHILAKI 850
Query: 61 DWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE RMK+ L + L+ Y RR+LLTGTPLQN P +F
Sbjct: 851 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF 910
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE L
Sbjct: 911 KSCSTFEQWFNAPFAMTG--ERVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVESQL 965
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M+
Sbjct: 966 PEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGA-------KTLMNTIMQ 1018
Query: 240 LRKTCNHPLL---------NYPYFSD--LSKDFLVKSCGKLWILDRILIKLQRTGHRVLL 288
LRK CNHP + + +S+ ++ L ++ GK +LDRIL KL+ T HRVLL
Sbjct: 1019 LRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLL 1078
Query: 289 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348
F MT L+ I+E+Y +R +Y R+DGTT EDR + + FN S FIFLLS RA G
Sbjct: 1079 FCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGL 1138
Query: 349 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK-- 403
GLNLQ+ADTV+I+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1139 GLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1198
Query: 404 ---EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH 460
+ ++ G D + + ++ +I N ++ ++ DE +N Q
Sbjct: 1199 LNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLN-----QMIAR 1252
Query: 461 EERRMTLETLLHDEERYQETVHDV---PSLQEVNRM---IARSEDEVELFDQMDEE---F 511
E L + D +R +E + P L E + + I + + EVE +EE F
Sbjct: 1253 REEEFDLFMRM-DMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIF 1311
Query: 512 GWIEEMTR---YDQV---PKWLRA 529
G R Y +WLRA
Sbjct: 1312 GRGSRQRRDVDYSDALTEKQWLRA 1335
Score = 58 (25.5 bits), Expect = 2.5e-74, Sum P(2) = 2.5e-74
Identities = 18/73 (24%), Positives = 30/73 (41%)
Query: 887 SKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELV 946
S+L+ G Q+ + L R E Y + D +KI +R+ +Y + +L
Sbjct: 1417 SQLEIEGNSSGRQLSEVFIQLPSRKELPEYYELIRKPV-DFKKIKERIRNHKYRSLGDLE 1475
Query: 947 SDVQFMLKGAMQF 959
DV + A F
Sbjct: 1476 KDVMLLCHNAQTF 1488
Score = 42 (19.8 bits), Expect = 1.2e-72, Sum P(2) = 1.2e-72
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 563 ETERKRGPKGKKYPNYKEVDDEIGEY-SEASSDE 595
E R G KGKK PN + + ++ S+ DE
Sbjct: 1553 EKGRDTG-KGKKRPNRGKAKPVVSDFDSDEEQDE 1585
Score = 42 (19.8 bits), Expect = 1.2e-72, Sum P(2) = 1.2e-72
Identities = 19/88 (21%), Positives = 35/88 (39%)
Query: 787 AQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMP--G 844
A+ + E ++ ESN ++ E S++ KI K TG+ P G
Sbjct: 1509 ARQKIAKEEESEEESNEEEEEEDEEESEAEAKSVKVKIKLNKKEEKGRDTGKGKKRPNRG 1568
Query: 845 HTEDAADHF---KESWDGKIANASGSSN 869
+ F +E + + + ASG+ +
Sbjct: 1569 KAKPVVSDFDSDEEQDENEQSEASGTDD 1596
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 775 (277.9 bits), Expect = 3.6e-74, P = 3.6e-74
Identities = 207/564 (36%), Positives = 297/564 (52%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W E KW PSV I Y G R L Q + + KFNVL+TTYE+I+ D+ L+K+
Sbjct: 792 LSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LRSGKFNVLLTTYEYIIKDKHILAKI 850
Query: 61 DWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE RMK+ L + L+ Y RR+LLTGTPLQN P +F
Sbjct: 851 RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIF 910
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F WF+ PF G D L E+ ++II RLH++L PF+LRR ++VE L
Sbjct: 911 KSCSTFEQWFNAPFAMTG--ERVD---LNEEETILIIRRLHKVLRPFLLRRLKKEVESQL 965
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C MSA+Q +Y ++A G L D ++ ++ + KTL N M+
Sbjct: 966 PEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGA-------KTLMNTIMQ 1018
Query: 240 LRKTCNHPLL---------NYPYFSD--LSKDFLVKSCGKLWILDRILIKLQRTGHRVLL 288
LRK CNHP + + +S+ ++ L ++ GK +LDRIL KL+ T HRVLL
Sbjct: 1019 LRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLL 1078
Query: 289 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348
F MT L+ I+E+Y +R +Y R+DGTT EDR + + FN S FIFLLS RA G
Sbjct: 1079 FCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGL 1138
Query: 349 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQK-- 403
GLNLQ+ADTV+I+D D NP + QA RAHRIGQ+ EV+V+ + +V +KI + K
Sbjct: 1139 GLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK 1198
Query: 404 ---EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH 460
+ ++ G D + + ++ +I N ++ ++ DE +N Q
Sbjct: 1199 LNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLN-----QMIAR 1252
Query: 461 EERRMTLETLLHDEERYQETVHDV---PSLQEVNRM---IARSEDEVELFDQMDEE---F 511
E L + D +R +E + P L E + + I + + EVE +EE F
Sbjct: 1253 REEEFDLFMRM-DMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIF 1311
Query: 512 GWIEEMTR---YDQV---PKWLRA 529
G R Y +WLRA
Sbjct: 1312 GRGSRQRRDVDYSDALTEKQWLRA 1335
>SGD|S000005816 [details] [associations]
symbol:SNF2 "Catalytic subunit of the SWI/SNF chromatin
remodeling complex" species:4932 "Saccharomyces cerevisiae"
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA;IMP] [GO:0006338
"chromatin remodeling" evidence=IGI;IMP] [GO:0031496 "positive
regulation of mating type switching" evidence=IMP] [GO:0031492
"nucleosomal DNA binding" evidence=IDA] [GO:0042766 "nucleosome
mobilization" evidence=IMP;IDA] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP;IDA]
[GO:0044109 "cellular alcohol catabolic process" evidence=IMP]
[GO:0005987 "sucrose catabolic process" evidence=IMP] [GO:0070577
"histone acetyl-lysine binding" evidence=IMP;IDA] [GO:0042148
"strand invasion" evidence=IMP] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IMP] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00384 SMART:SM00490
SMART:SM00951 SGD:S000005816 GO:GO:0005524 EMBL:BK006948
GO:GO:0006351 GO:GO:0006261 GO:GO:0016514 GO:GO:0006302
GO:GO:0004386 GO:GO:0005987 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GeneTree:ENSGT00550000074659 InterPro:IPR014012
PROSITE:PS51204 EMBL:X89633 GO:GO:0008094 HOGENOM:HOG000172362
GO:GO:0031492 RefSeq:NP_014933.3 GeneID:854465 KEGG:sce:YOR290C
KO:K11786 GO:GO:0061412 GO:GO:0042148 OrthoDB:EOG4D565R EMBL:M61703
EMBL:X57837 EMBL:D90459 EMBL:Z75198 EMBL:Z75199 PIR:S15047
RefSeq:NP_014935.3 ProteinModelPortal:P22082 SMR:P22082
DIP:DIP-1150N IntAct:P22082 MINT:MINT-600461 STRING:P22082
PaxDb:P22082 PeptideAtlas:P22082 EnsemblFungi:YOR290C GeneID:854467
KEGG:sce:YOR292C CYGD:YOR290c OMA:HPNFLSK NextBio:976750
Genevestigator:P22082 GermOnline:YOR290C GO:GO:0044109
GO:GO:0031496 Uniprot:P22082
Length = 1703
Score = 745 (267.3 bits), Expect = 5.3e-71, Sum P(3) = 5.3e-71
Identities = 195/617 (31%), Positives = 323/617 (52%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W SE KW P++ I + G+ ++R + ++ A +F+V++TT+E+I+ +R+ LSKV
Sbjct: 828 LSNWSSEFAKWAPTLRTISFKGSPNER-KAKQAKIRAGEFDVVLTTFEYIIKERALLSKV 886
Query: 61 DWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
W ++IIDE RMK+ +S L+ L+ Y RL+LTGTPLQN+ P++F
Sbjct: 887 KWVHMIIDEGHRMKNAQSKLSLTLNTHYHADYRLILTGTPLQNNLPELWALLNFVLPKIF 946
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
++ K+F +WF+ PF G D L E+ +++I RLH++L PF+LRR +DVE L
Sbjct: 947 NSVKSFDEWFNTPFANTG---GQDKIELSEEETLLVIRRLHKVLRPFLLRRLKKDVEKEL 1003
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV V++C+MSA+Q +Y + L + ++ K+ V + NN+ M+
Sbjct: 1004 PDKVEKVVKCKMSALQQIMYQQMLKYRRLFIGDQNNKKMVG---------LRGFNNQIMQ 1054
Query: 240 LRKTCNHPLLNYPYFSDLS-----KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTK 294
L+K CNHP + ++ D + + GK +LDRIL KL+ TGHRVL+F MT+
Sbjct: 1055 LKKICNHPFVFEEVEDQINPTRETNDDIWRVAGKFELLDRILPKLKATGHRVLIFFQMTQ 1114
Query: 295 LLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS 354
++DI+E++L++ + Y R+DG T ++R + FN+ DS+ F+LS RA G GLNLQ+
Sbjct: 1115 IMDIMEDFLRYINIKYLRLDGHTKSDERSELLRLFNAPDSEYLCFILSTRAGGLGLNLQT 1174
Query: 355 ADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVD 414
ADTVII+D D NP + QA RAHRIGQK EV+++ + I+++ E+ +
Sbjct: 1175 ADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRL------ITTNSVEEVILERAYKK 1228
Query: 415 LEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDE 474
L D+ GK G + + Q+ + +++A ++R E + E L D
Sbjct: 1229 L--DIDGKVIQAGKFDNKSTSEEQEA---LLRSLLDAE--EERRKKRESGVEEEEELKDS 1281
Query: 475 ERYQETVHDVPSLQEVNRMI---ARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRAST 531
E + + + + RM ++ E+E+ + ++ E+ + +R + L+
Sbjct: 1282 EINEILARNDEEMAVLTRMDEDRSKKEEELGVKSRLLEKSELPDIYSR--DIGAELKREE 1339
Query: 532 KEVNATIANLSKKPSKNILFGSNIGVDSG----EIETERKRGPKGKKYPNYKEVDDEI-- 585
E A + K + N+ + E+ + K + +K KE E
Sbjct: 1340 SESAAVYNGRGARERKTATYNDNMSEEQWLRQFEVSDDEKNDKQARKQRTKKEDKSEAID 1399
Query: 586 --GEYSEASSDERNGYP 600
GE + D N P
Sbjct: 1400 GNGEIKGENIDADNDGP 1416
Score = 58 (25.5 bits), Expect = 5.3e-71, Sum P(3) = 5.3e-71
Identities = 38/156 (24%), Positives = 56/156 (35%)
Query: 683 FGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKI 742
+ A E + + + M +E + VS D D Q T D+ E +I
Sbjct: 1346 YNGRGARERKTATYNDNMSEEQWLRQFEVSDDEKNDKQARKQRTKKEDKSEAIDG-NGEI 1404
Query: 743 KRKR--SIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGE 800
K + + PR E+R+ DT L D L + P ++K G
Sbjct: 1405 KGENIDADNDGPRINNISAEDRA--DTDLAMNDDDFLSKKRKAGRPRG--RPKKVKLEGS 1460
Query: 801 SNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKT 836
NS E S + N PS + PK R + KT
Sbjct: 1461 ENS-EPPALESSPVTGDNSPSEDFMDIPKPRTAGKT 1495
Score = 39 (18.8 bits), Expect = 5.3e-71, Sum P(3) = 5.3e-71
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 930 IDQRVDRLEYNGVMELVSDVQFMLKGA 956
I+ ++ L YN + E + D + A
Sbjct: 1601 INTHIETLAYNSLKETLQDFHLIFSNA 1627
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 459 (166.6 bits), Expect = 1.9e-67, Sum P(2) = 1.9e-67
Identities = 156/486 (32%), Positives = 245/486 (50%)
Query: 144 DDWLET----EKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 199
D+W E + + I+I +LH +L PF+LRR DVE SL PK+ + M+ +Q
Sbjct: 370 DEWFEQNNSEQDQEIVIQQLHSVLNPFLLRRVKADVEKSLLPKIETNVYVGMTDMQ---I 426
Query: 200 DWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL------NYPY 253
W K+ L D + V K + K L N M+LRK CNHP L PY
Sbjct: 427 QWYKSL--LEKDIDAVNGAVGKR---EGKT--RLLNIVMQLRKCCNHPYLFEGAEPGPPY 479
Query: 254 FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRI 313
+D + L+ + GK+ ILD++L +L+ G RVL+FS M++LLDILE+Y +R Y RI
Sbjct: 480 TTD---EHLIFNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRI 536
Query: 314 DGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQA 373
DG+TS E+R AI ++N +S+ F+FLL+ RA G G+NL +ADTVI++D D NP+ + QA
Sbjct: 537 DGSTSHEERIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQA 596
Query: 374 VARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--RSG-G--TVDL---EDD 418
+ RAHRIGQK++V V E V+++ + + D+L + G G T L +DD
Sbjct: 597 MDRAHRIGQKKQVHVYRFVTENAIEEKVIERAAQKLRLDQLVIQQGTGKKTASLGNSKDD 656
Query: 419 LAGKDRYIGSIEGLIRNNIQQYKIDM-ADEVINAGRFDQRTTHEERRMTLETL-LHDEER 476
L ++ G+ + + + +D D+++ G +Q+T +E ++L L D ++
Sbjct: 657 LLDMIQF-GA-KNMFEKKASKVTVDADIDDILKKG--EQKT--QELNAKYQSLGLDDLQK 710
Query: 477 YQETVHDVPSLQEVN--RMIARSEDEV-ELFDQMDEEFGWIEEMTRY---DQVPKWLRAS 530
+ + S E N +S D+V E + E E T Y D + +
Sbjct: 711 FNGIENQ--SAYEWNGKSFQKKSNDKVVEWINPSRRERR--REQTTYSVDDYYKEIIGGG 766
Query: 531 TKEVNATIANLSKKPSKNILFGSNIGVDSGEIET-ERKRGPKGKKYPNYKEVDDEI-GEY 588
+K + + ++ G + E++ + K KK NYK +I G+
Sbjct: 767 SKSASKQTPQPKAPRAPKVIHGQDFQFFPKELDALQEKEQLYFKKKVNYKVTSYDITGDI 826
Query: 589 SEASSD 594
SD
Sbjct: 827 RNEGSD 832
Score = 317 (116.6 bits), Expect = 1.9e-67, Sum P(2) = 1.9e-67
Identities = 66/196 (33%), Positives = 113/196 (57%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W+ E KW P+V+ + G KD R+ + + +F+VL+T+YE ++ +++ L ++ W+
Sbjct: 248 WRREFLKWTPNVNVLVLHGDKDTRADIVRNIILEARFDVLITSYEMVIREKNALKRLAWQ 307
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
YI+IDEA R+K+ +S L++ + + + RLL+TGTPLQN+ P++F + +
Sbjct: 308 YIVIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHELWALLNFLLPDIFGDSE 367
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F +WF Q +N++ D + I+I +LH +L PF+LRR DVE SL PK+
Sbjct: 368 LFDEWFEQ--------NNSEQD------QEIVIQQLHSVLNPFLLRRVKADVEKSLLPKI 413
Query: 184 SIVLRCRMSAIQSAIY 199
+ M+ +Q Y
Sbjct: 414 ETNVYVGMTDMQIQWY 429
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 691 (248.3 bits), Expect = 1.5e-66, Sum P(2) = 1.5e-66
Identities = 171/460 (37%), Positives = 260/460 (56%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W+ E KW P V+ + G K+QR+ + ++ KF+VL+T++E I+ ++S L K W+
Sbjct: 203 WRREFAKWTPDVNVVVLQGDKEQRASIIKDQLYTAKFDVLITSFEMILREKSALQKFRWE 262
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
YI++DEA R+K+ +S L++ + + + RLL+TGTPLQN+ P+VF +
Sbjct: 263 YIVVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDS- 321
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
D F + F + +++ + K + LHQ+L PF+LRR DVE SL PK+
Sbjct: 322 ---DQFDEAFDNQNSEELDEEEKQRRQDKAV--SELHQLLSPFLLRRVKADVEKSLLPKI 376
Query: 184 SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 243
+ M+ +Q +W K L D + V K + K L N M+LRK
Sbjct: 377 ETNVYIGMTDMQ---VEWYKRL--LEKDIDAVNGVVGKR---EGKT--RLLNIVMQLRKC 426
Query: 244 CNHPLL------NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 297
CNHP L PY +D + LV + GK+ ILD++L K + G RVL+FS M+++LD
Sbjct: 427 CNHPYLFDGAEPGPPYTTD---EHLVYNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLD 483
Query: 298 ILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT 357
ILE+Y +R Y RIDG+TS EDR AI ++N+ DS+ FIFLL+ RA G G+NL SAD
Sbjct: 484 ILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPDSEKFIFLLTTRAGGLGINLTSADI 543
Query: 358 VIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--R 408
VI+YD D NP+ + QA+ RAHRIGQK++VKV E V+++ + + D+L +
Sbjct: 544 VILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAIEEKVLERAAQKLRLDQLVIQ 603
Query: 409 SGGTVDLEDDLAG-KDRYIGSIEGLIRNNIQQYKIDMADE 447
G ++ +++ KD IG I+ + + K M D+
Sbjct: 604 QGRQMNSNNNVGNSKDDLIGMIQHGAKEVFENSKGTMLDD 643
Score = 56 (24.8 bits), Expect = 1.5e-66, Sum P(2) = 1.5e-66
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 1118 NIKSPGLGLVPKDMRHTQQTTHQHGWANQP-AQPANGGSGAVGWANPVKRLRTD 1170
N K LGL D+++ + W Q + N S + W NP KR+R +
Sbjct: 660 NNKFNKLGL--DDIQNFTSDASAYEWNGQDFTKKGNNASLGLNWINPSKRVRKE 711
Score = 49 (22.3 bits), Expect = 8.0e-66, Sum P(2) = 8.0e-66
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 488 QEVNRMIARSEDEVELFDQM-DEEF-GWIE-EMTRY-DQVPKWLRASTKEVNATIANLSK 543
+++N +A +E+E+ D++ +E F W + T + K+ R K++ + N K
Sbjct: 811 EKINNAVALTEEEIATRDRLLEESFHNWSRRDFTNFIHATAKYGRNEYKKIAKALGN--K 868
Query: 544 KPSK 547
K S+
Sbjct: 869 KRSE 872
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 691 (248.3 bits), Expect = 1.5e-66, Sum P(2) = 1.5e-66
Identities = 171/460 (37%), Positives = 260/460 (56%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W+ E KW P V+ + G K+QR+ + ++ KF+VL+T++E I+ ++S L K W+
Sbjct: 203 WRREFAKWTPDVNVVVLQGDKEQRASIIKDQLYTAKFDVLITSFEMILREKSALQKFRWE 262
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
YI++DEA R+K+ +S L++ + + + RLL+TGTPLQN+ P+VF +
Sbjct: 263 YIVVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDS- 321
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
D F + F + +++ + K + LHQ+L PF+LRR DVE SL PK+
Sbjct: 322 ---DQFDEAFDNQNSEELDEEEKQRRQDKAV--SELHQLLSPFLLRRVKADVEKSLLPKI 376
Query: 184 SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 243
+ M+ +Q +W K L D + V K + K L N M+LRK
Sbjct: 377 ETNVYIGMTDMQ---VEWYKRL--LEKDIDAVNGVVGKR---EGKT--RLLNIVMQLRKC 426
Query: 244 CNHPLL------NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 297
CNHP L PY +D + LV + GK+ ILD++L K + G RVL+FS M+++LD
Sbjct: 427 CNHPYLFDGAEPGPPYTTD---EHLVYNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLD 483
Query: 298 ILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT 357
ILE+Y +R Y RIDG+TS EDR AI ++N+ DS+ FIFLL+ RA G G+NL SAD
Sbjct: 484 ILEDYCYFRDYEYCRIDGSTSHEDRIEAIDEYNAPDSEKFIFLLTTRAGGLGINLTSADI 543
Query: 358 VIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--R 408
VI+YD D NP+ + QA+ RAHRIGQK++VKV E V+++ + + D+L +
Sbjct: 544 VILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAIEEKVLERAAQKLRLDQLVIQ 603
Query: 409 SGGTVDLEDDLAG-KDRYIGSIEGLIRNNIQQYKIDMADE 447
G ++ +++ KD IG I+ + + K M D+
Sbjct: 604 QGRQMNSNNNVGNSKDDLIGMIQHGAKEVFENSKGTMLDD 643
Score = 56 (24.8 bits), Expect = 1.5e-66, Sum P(2) = 1.5e-66
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 1118 NIKSPGLGLVPKDMRHTQQTTHQHGWANQP-AQPANGGSGAVGWANPVKRLRTD 1170
N K LGL D+++ + W Q + N S + W NP KR+R +
Sbjct: 660 NNKFNKLGL--DDIQNFTSDASAYEWNGQDFTKKGNNASLGLNWINPSKRVRKE 711
Score = 49 (22.3 bits), Expect = 8.0e-66, Sum P(2) = 8.0e-66
Identities = 16/64 (25%), Positives = 33/64 (51%)
Query: 488 QEVNRMIARSEDEVELFDQM-DEEF-GWIE-EMTRY-DQVPKWLRASTKEVNATIANLSK 543
+++N +A +E+E+ D++ +E F W + T + K+ R K++ + N K
Sbjct: 811 EKINNAVALTEEEIATRDRLLEESFHNWSRRDFTNFIHATAKYGRNEYKKIAKALGN--K 868
Query: 544 KPSK 547
K S+
Sbjct: 869 KRSE 872
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 440 (159.9 bits), Expect = 8.8e-65, Sum P(4) = 8.8e-65
Identities = 130/378 (34%), Positives = 209/378 (55%)
Query: 151 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 210
K+ II +LH IL+PFMLRR +VE SLPPK I + MS +Q +Y I + +
Sbjct: 521 KQSEIITQLHTILKPFMLRRLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDILSKN---I 577
Query: 211 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL-----NYPYFSDLSKDFLVKS 265
D N + +K + N M+LRK CNHP L PY + + L+++
Sbjct: 578 DV--------LNAMTGSK--NQMLNILMQLRKCCNHPYLFDGIEEPPY---IEGNHLIET 624
Query: 266 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 325
GK+ +LD++L +L++ RVLLFS MT+LLDI+++Y +W+ Y RIDG+T ++R+
Sbjct: 625 SGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDERQVR 684
Query: 326 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 385
I FN +S FIFLLS RA G G+NL +AD VI++D D NP+ + QA+ RAHRIGQK+
Sbjct: 685 INQFNEPNSKYFIFLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKR 744
Query: 386 VKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMA 445
V ++Y V + S +K E R+ + L+ + K + ++ NN Q+
Sbjct: 745 V-IVYR--FVTQNSVEEKIVE-RAAKKLKLDSLIIQKGKL--NLNSAKENNKQELH---- 794
Query: 446 DEVINAGRFDQRTTHEERRMT---LETLLHD-EERYQETVHDVPSLQEVNRMIARSEDE- 500
+++N G + T + ++ ++ +L D E+R E + +L+ + + S D
Sbjct: 795 -DILNFGAPEVYKTQDISSISDEDIDIILADAEKRTIEIEKKLKNLENIFDLTNISLDGG 853
Query: 501 VELFDQMDEEFGWIEEMT 518
+ +++ +++E EE T
Sbjct: 854 LNMYNDLEKEAS--EEST 869
Score = 328 (120.5 bits), Expect = 8.8e-65, Sum P(4) = 8.8e-65
Identities = 74/196 (37%), Positives = 108/196 (55%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W E+ KW + Y G KDQR L ++ + F+VL+TTYE ++ D+S L +DW
Sbjct: 386 WYEEIKKWCTPMKAFKYYGNKDQRKEL-NRNLLHSDFDVLLTTYEIVIKDKSALYDIDWF 444
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
+++IDEA R+K+ +SVL+ + R + RLL+TGTPL N+ P++FDN +
Sbjct: 445 FLVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNLKELWSLLNFLMPKIFDNSE 504
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F + F+ K N + II +LH IL+PFMLRR +VE SLPPK
Sbjct: 505 EFDNLFN--ISKISTNDNKQSE---------IITQLHTILKPFMLRRLKVEVEQSLPPKR 553
Query: 184 SIVLRCRMSAIQSAIY 199
I + MS +Q +Y
Sbjct: 554 EIYIFVGMSKLQKKLY 569
Score = 44 (20.5 bits), Expect = 8.8e-65, Sum P(4) = 8.8e-65
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 846 TEDAADHFKESWDGK--IANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEK 895
+E++ D S G+ I SG+++ + +++ K I+K++R I+K
Sbjct: 865 SEESTDEEDSSGSGEETILEGSGNNDIVEENGVKKKKKKKKNINKIRRTIKK 916
Score = 42 (19.8 bits), Expect = 3.8e-35, Sum P(4) = 3.8e-35
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG 177
DN H+ + + HN D+++ EK + +L Q+L +R E + G
Sbjct: 218 DNNN--HNEDNNNHNDDNNNHNDDNNYNSEEKPNYLQEKLEQLLA--QTKRYTEKLAG 271
Score = 42 (19.8 bits), Expect = 6.0e-23, Sum P(4) = 6.0e-23
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 479 ETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLR--ASTK--EV 534
ET + L ++ + + V LF QM I++ R+ P +LR ST E
Sbjct: 623 ETSGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYP-YLRIDGSTPGDER 681
Query: 535 NATIANLSKKPSKNILF 551
I ++ SK +F
Sbjct: 682 QVRINQFNEPNSKYFIF 698
Score = 41 (19.5 bits), Expect = 8.8e-65, Sum P(4) = 8.8e-65
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 964 HEVRSEARKVHDL-FFDLLKI 983
H R+EAR HD FF++ K+
Sbjct: 955 HGWRAEARGGHDFQFFNVEKL 975
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 440 (159.9 bits), Expect = 8.8e-65, Sum P(4) = 8.8e-65
Identities = 130/378 (34%), Positives = 209/378 (55%)
Query: 151 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 210
K+ II +LH IL+PFMLRR +VE SLPPK I + MS +Q +Y I + +
Sbjct: 521 KQSEIITQLHTILKPFMLRRLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDILSKN---I 577
Query: 211 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL-----NYPYFSDLSKDFLVKS 265
D N + +K + N M+LRK CNHP L PY + + L+++
Sbjct: 578 DV--------LNAMTGSK--NQMLNILMQLRKCCNHPYLFDGIEEPPY---IEGNHLIET 624
Query: 266 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 325
GK+ +LD++L +L++ RVLLFS MT+LLDI+++Y +W+ Y RIDG+T ++R+
Sbjct: 625 SGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDERQVR 684
Query: 326 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 385
I FN +S FIFLLS RA G G+NL +AD VI++D D NP+ + QA+ RAHRIGQK+
Sbjct: 685 INQFNEPNSKYFIFLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKR 744
Query: 386 VKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMA 445
V ++Y V + S +K E R+ + L+ + K + ++ NN Q+
Sbjct: 745 V-IVYR--FVTQNSVEEKIVE-RAAKKLKLDSLIIQKGKL--NLNSAKENNKQELH---- 794
Query: 446 DEVINAGRFDQRTTHEERRMT---LETLLHD-EERYQETVHDVPSLQEVNRMIARSEDE- 500
+++N G + T + ++ ++ +L D E+R E + +L+ + + S D
Sbjct: 795 -DILNFGAPEVYKTQDISSISDEDIDIILADAEKRTIEIEKKLKNLENIFDLTNISLDGG 853
Query: 501 VELFDQMDEEFGWIEEMT 518
+ +++ +++E EE T
Sbjct: 854 LNMYNDLEKEAS--EEST 869
Score = 328 (120.5 bits), Expect = 8.8e-65, Sum P(4) = 8.8e-65
Identities = 74/196 (37%), Positives = 108/196 (55%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W E+ KW + Y G KDQR L ++ + F+VL+TTYE ++ D+S L +DW
Sbjct: 386 WYEEIKKWCTPMKAFKYYGNKDQRKEL-NRNLLHSDFDVLLTTYEIVIKDKSALYDIDWF 444
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
+++IDEA R+K+ +SVL+ + R + RLL+TGTPL N+ P++FDN +
Sbjct: 445 FLVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNLKELWSLLNFLMPKIFDNSE 504
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F + F+ K N + II +LH IL+PFMLRR +VE SLPPK
Sbjct: 505 EFDNLFN--ISKISTNDNKQSE---------IITQLHTILKPFMLRRLKVEVEQSLPPKR 553
Query: 184 SIVLRCRMSAIQSAIY 199
I + MS +Q +Y
Sbjct: 554 EIYIFVGMSKLQKKLY 569
Score = 44 (20.5 bits), Expect = 8.8e-65, Sum P(4) = 8.8e-65
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 846 TEDAADHFKESWDGK--IANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEK 895
+E++ D S G+ I SG+++ + +++ K I+K++R I+K
Sbjct: 865 SEESTDEEDSSGSGEETILEGSGNNDIVEENGVKKKKKKKKNINKIRRTIKK 916
Score = 42 (19.8 bits), Expect = 3.8e-35, Sum P(4) = 3.8e-35
Identities = 14/58 (24%), Positives = 25/58 (43%)
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG 177
DN H+ + + HN D+++ EK + +L Q+L +R E + G
Sbjct: 218 DNNN--HNEDNNNHNDDNNNHNDDNNYNSEEKPNYLQEKLEQLLA--QTKRYTEKLAG 271
Score = 42 (19.8 bits), Expect = 6.0e-23, Sum P(4) = 6.0e-23
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 479 ETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLR--ASTK--EV 534
ET + L ++ + + V LF QM I++ R+ P +LR ST E
Sbjct: 623 ETSGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYP-YLRIDGSTPGDER 681
Query: 535 NATIANLSKKPSKNILF 551
I ++ SK +F
Sbjct: 682 QVRINQFNEPNSKYFIF 698
Score = 41 (19.5 bits), Expect = 8.8e-65, Sum P(4) = 8.8e-65
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 964 HEVRSEARKVHDL-FFDLLKI 983
H R+EAR HD FF++ K+
Sbjct: 955 HGWRAEARGGHDFQFFNVEKL 975
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 405 (147.6 bits), Expect = 6.5e-63, Sum P(2) = 6.5e-63
Identities = 107/255 (41%), Positives = 148/255 (58%)
Query: 188 RCRMSAIQSAIYDWIKATGTL--RVDPE-DEKRRVQKNPI-YQAKVYKTLNNRCMELRKT 243
R R S S I D+ L ++ PE D +R + + + +++V L N M LRK
Sbjct: 489 RTRKSVDYSKIDDFPNELEKLISQIQPEVDRERTIVETSVPIESEVNLKLQNIMMLLRKC 548
Query: 244 CNHP-LLNYPYFSDLSKDF-----LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 297
CNHP L+ YP ++++F LV + GK ILDR+L +L+ GH+VLLFS MT++LD
Sbjct: 549 CNHPYLIEYP-IDPVTQEFKVDEELVTNSGKFLILDRMLPELKTRGHKVLLFSQMTRMLD 607
Query: 298 ILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT 357
IL +Y +R + R+DG+ S +RE I FN+ D D FIFL+S RA G G+NL +ADT
Sbjct: 608 ILMDYCHFRNFNFSRLDGSMSYSEREKNIHSFNT-DPDVFIFLVSTRAGGLGINLTAADT 666
Query: 358 VIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLED 417
VIIYD D NP+++ QA R HRIGQ R V V+Y + I QK E R+ LE
Sbjct: 667 VIIYDSDWNPQSDLQAQDRCHRIGQTRPV-VVYRLVTANTID--QKIVE-RAAAKRKLEK 722
Query: 418 DLAGKDRYIGSIEGL 432
+ K+ + G GL
Sbjct: 723 LIIHKNHFKGGQSGL 737
Score = 324 (119.1 bits), Expect = 6.5e-63, Sum P(2) = 6.5e-63
Identities = 74/229 (32%), Positives = 116/229 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFS---QEVAALKFN-VLVTTYEFIMYDRSKLSK 59
W +E ++ P + + Y G + +R L + L+ + V++T++E M DR+ L
Sbjct: 264 WMAEFKRFTPEIPTMLYHGTQQERRILVKHIHERKGTLQIHPVVITSFEIAMRDRTTLQN 323
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE R+K+ + L R+L R+ +LLLTGTPLQN+ P+VF
Sbjct: 324 CYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVF 383
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
D+ K+F WF E +D + E++ ++H LHQIL PF+LRR DV +
Sbjct: 384 DDLKSFESWFDITSLSE-----TAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEV 438
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 228
PPK +V+ +S Q Y I + EK V+ +P + K
Sbjct: 439 PPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETVELSPTGRPK 487
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 398 (145.2 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 106/255 (41%), Positives = 148/255 (58%)
Query: 188 RCRMSAIQSAIYDWIKATGTL--RVDPEDEKRR--VQKNPIYQAKVYKTLNNRCMELRKT 243
R R S S I D+ L ++ PE ++ R V+ N +++V L N M LRK
Sbjct: 511 RTRKSIDYSKIDDFPNELEKLISQIQPEVDRERAVVETNIPVESEVNLKLQNIMMLLRKC 570
Query: 244 CNHP-LLNYPYFSDLSKDF-----LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 297
CNHP L+ YP ++++F LV + GK ILDR+L +L+ GH+VLLFS MT++LD
Sbjct: 571 CNHPYLIEYP-IDPVTQEFKIDEELVTNSGKFLILDRMLPELKIRGHKVLLFSQMTRMLD 629
Query: 298 ILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT 357
IL +Y +R + R+DG+ S +RE + FN+ D D FIFL+S RA G G+NL +ADT
Sbjct: 630 ILMDYCHFRNFNFSRLDGSMSYTEREKNMHSFNT-DPDVFIFLVSTRAGGLGINLTAADT 688
Query: 358 VIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLED 417
VIIYD D NP+++ QA R HRIGQ + V V+Y + I QK E R+ LE
Sbjct: 689 VIIYDSDWNPQSDLQAQDRCHRIGQTKPV-VVYRLVTANTID--QKIVE-RAAAKRKLEK 744
Query: 418 DLAGKDRYIGSIEGL 432
+ K+ + G GL
Sbjct: 745 LIIHKNHFKGGQSGL 759
Score = 330 (121.2 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 74/229 (32%), Positives = 119/229 (51%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFS---QEVAALKFN-VLVTTYEFIMYDRSKLSK 59
W +E ++ P + + Y G++ +R +L + + L+ + V++T++E M DR+ L
Sbjct: 286 WMAEFQRFTPEIPTMLYHGSQQERRKLVNHIHKRKGTLQIHPVVITSFEIAMRDRNVLQH 345
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE R+K+ + L R+L R+ +LLLTGTPLQN+ P+VF
Sbjct: 346 CYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVF 405
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
D+ K+F WF E +D + E++ ++H LHQIL PF+LRR DV +
Sbjct: 406 DDLKSFESWFDITSLSE-----TAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEV 460
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 228
PPK +V+ +S Q Y I + EK V+ +P + K
Sbjct: 461 PPKREVVVYAPLSKKQEVFYTAIVNRTITNMFGSSEKETVELSPTGRPK 509
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 395 (144.1 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 116/330 (35%), Positives = 178/330 (53%)
Query: 188 RCRMSAIQSAIYDWIKATGTL--RVDPEDEKRR--VQKNPIYQAKVYKTLNNRCMELRKT 243
R R S S I D+ L ++ PE ++ R V+ N +++V L N M LRK
Sbjct: 511 RTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLKLQNIMMLLRKC 570
Query: 244 CNHP-LLNYPYFSDLSKDF-----LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 297
CNHP L+ YP ++++F LV + GK ILDR+L +L++ GH+VLLFS MT +LD
Sbjct: 571 CNHPYLIEYP-IDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLD 629
Query: 298 ILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT 357
IL +Y R + R+DG+ S +RE + FN+ D + FIFL+S RA G G+NL +ADT
Sbjct: 630 ILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNT-DPEVFIFLVSTRAGGLGINLTAADT 688
Query: 358 VIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLED 417
VIIYD D NP+++ QA R HRIGQ + V V+Y + I QK E R+ LE
Sbjct: 689 VIIYDSDWNPQSDLQAQDRCHRIGQTKPV-VVYRLVTANTID--QKIVE-RAAAKRKLEK 744
Query: 418 DLAGKDRYIGSIEGLIRNNIQQYKIDMAD--EVINAGRFDQRTTHEERRMT----LETLL 471
+ K+ + G GL N+ + +D + E++ + +++ ++ LE LL
Sbjct: 745 LIIHKNHFKGGQSGL---NLSKNFLDPKELMELLKSRDYEREIKGSREKVISDKDLELLL 801
Query: 472 HDEERYQETVHDVPSLQEVN--RMIARSED 499
+ + P +++ +++ SED
Sbjct: 802 DRSDLIDQMNASGPIKEKMGIFKILENSED 831
Score = 329 (120.9 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 75/237 (31%), Positives = 122/237 (51%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFS---QEVAALKFN-VLVTTYEFIMYDRSKLSK 59
W +E ++ P + + Y G +++R +L + L+ + V++T++E M DR+ L
Sbjct: 286 WMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRKGTLQIHPVVITSFEIAMRDRNALQH 345
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE R+K+ + L R+L R+ +LLLTGTPLQN+ P+VF
Sbjct: 346 CYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVF 405
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
D+ K+F WF E +D + E++ ++H LHQIL PF+LRR DV +
Sbjct: 406 DDLKSFESWFDITSLSE-----TAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEV 460
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK--VYKTLN 234
PPK +V+ +S Q Y I + EK ++ +P + K K++N
Sbjct: 461 PPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETIELSPTGRPKRRTRKSIN 517
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 400 (145.9 bits), Expect = 3.5e-62, Sum P(2) = 3.5e-62
Identities = 106/255 (41%), Positives = 148/255 (58%)
Query: 188 RCRMSAIQSAIYDWIKATGTL--RVDPEDEKRR--VQKNPIYQAKVYKTLNNRCMELRKT 243
R R S S I D+ L ++ PE ++ R V+ N +++V L N M LRK
Sbjct: 512 RARKSINYSKIDDFPNELEKLISQMQPEVDRERAVVETNIPVESEVNLKLQNIMMLLRKC 571
Query: 244 CNHP-LLNYPYFSDLSKDF-----LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 297
CNHP L+ YP ++++F LV + GK ILDR+L +L+ GH+VLLFS MT++LD
Sbjct: 572 CNHPYLIEYP-IDPVTQEFKIDEELVTNSGKFLILDRMLPELKARGHKVLLFSQMTRMLD 630
Query: 298 ILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT 357
IL +Y +R + R+DG+ S +RE + FN+ D D FIFL+S RA G G+NL +ADT
Sbjct: 631 ILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNT-DPDVFIFLVSTRAGGLGINLTAADT 689
Query: 358 VIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLED 417
VIIYD D NP+++ QA R HRIGQ + V V+Y + I QK E R+ LE
Sbjct: 690 VIIYDSDWNPQSDLQAQDRCHRIGQTKPV-VVYRLVTANTID--QKIVE-RAAAKRKLEK 745
Query: 418 DLAGKDRYIGSIEGL 432
+ K+ + G GL
Sbjct: 746 LIIHKNHFKGGQSGL 760
Score = 323 (118.8 bits), Expect = 3.5e-62, Sum P(2) = 3.5e-62
Identities = 73/224 (32%), Positives = 115/224 (51%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFS---QEVAALKFN-VLVTTYEFIMYDRSKLSK 59
W +E ++ P + + Y G + +R +L + L+ + V++T++E M DR+ L
Sbjct: 287 WMAEFQRFTPDIPTMLYHGTQQERRKLVKNIHKRKGTLQIHPVVITSFEIAMRDRNALQH 346
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE R+K+ + L R+L R+ +LLLTGTPLQN+ P+VF
Sbjct: 347 CYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVF 406
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
D+ K+F WF E +D + E++ ++H LHQIL PF+LRR DV +
Sbjct: 407 DDLKSFESWFDITSLSE-----TAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEV 461
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNP 223
PPK +V+ +S Q Y I + EK V+ +P
Sbjct: 462 PPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGCSEKETVELSP 505
>MGI|MGI:106209 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0001655 "urogenital system development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006342 "chromatin silencing" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030098 "lymphocyte differentiation"
evidence=TAS] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106209 GO:GO:0005524
GO:GO:0005634 GO:GO:0043066 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 HOGENOM:HOG000172362 OMA:ETFYTAI GO:GO:0006346
GO:GO:0030098 GO:GO:0046651 CTD:3070 HOVERGEN:HBG060049
OrthoDB:EOG4SN1N4 EMBL:U25691 EMBL:AF155210 EMBL:AK013266
EMBL:AK147126 EMBL:BC020056 EMBL:BC100394 IPI:IPI00121431
IPI:IPI00808497 PIR:JC4666 RefSeq:NP_032260.2 UniGene:Mm.392920
UniGene:Mm.486446 UniGene:Mm.57223 ProteinModelPortal:Q60848
SMR:Q60848 DIP:DIP-43735N IntAct:Q60848 MINT:MINT-2521001
STRING:Q60848 PhosphoSite:Q60848 PaxDb:Q60848 PRIDE:Q60848
DNASU:15201 Ensembl:ENSMUST00000025965 GeneID:15201 KEGG:mmu:15201
UCSC:uc008hjt.1 GeneTree:ENSGT00550000075106 InParanoid:Q60848
NextBio:287739 Bgee:Q60848 CleanEx:MM_HELLS Genevestigator:Q60848
GermOnline:ENSMUSG00000025001 Uniprot:Q60848
Length = 821
Score = 398 (145.2 bits), Expect = 2.2e-61, Sum P(2) = 2.2e-61
Identities = 105/275 (38%), Positives = 159/275 (57%)
Query: 209 RVDPEDEKRR--VQKNPIYQAKVYKTLNNRCMELRKTCNHP-LLNYPYFSDLSKDF---- 261
++ PE + R V+ N +++V L N M LRK CNHP ++ YP ++++F
Sbjct: 517 QIQPEVNRERTVVEGNIPIESEVNLKLRNIMMLLRKCCNHPYMIEYP-IDPVTQEFKIDE 575
Query: 262 -LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 320
LV + GK ILDR+L +L++ GH+VL+FS MT +LDIL +Y R ++ R+DG+ S
Sbjct: 576 ELVTNSGKFLILDRMLPELKKRGHKVLVFSQMTSMLDILMDYCHLRNFIFSRLDGSMSYS 635
Query: 321 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 380
+RE I FN+ D D F+FL+S RA G G+NL +ADTVIIYD D NP+++ QA R HRI
Sbjct: 636 EREKNIYSFNT-DPDVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRI 694
Query: 381 GQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQY 440
GQ + V V+Y + I QK E R+ LE + K+ + G GL ++ + +
Sbjct: 695 GQTKPV-VVYRLVTANTID--QKIVE-RAAAKRKLEKLIIHKNHFKGGQSGLSQS--KNF 748
Query: 441 KIDMADEVINAGRFDQRTTHEERRMTLETLLHDEE 475
+D A E++ R E + + E ++ DE+
Sbjct: 749 -LD-AKELMEL--LKSRDYEREVKGSREKVISDED 779
Score = 317 (116.6 bits), Expect = 2.2e-61, Sum P(2) = 2.2e-61
Identities = 73/229 (31%), Positives = 116/229 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFS---QEVAALKFN-VLVTTYEFIMYDRSKLSK 59
W +E ++ P + + Y G ++ R +L + L+ + V+VT++E M D++ L
Sbjct: 269 WMAEFKRFTPEIPTLLYHGTREDRRKLVKNIHKRQGTLQIHPVVVTSFEIAMRDQNALQH 328
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE R+K+ + L R+L R+ +LLLTGTPLQN+ P+VF
Sbjct: 329 CYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVF 388
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
D+ K+F WF E +D + E++ ++H LHQIL PF+LRR DV +
Sbjct: 389 DDLKSFESWFDITSLSE-----TAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEV 443
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 228
PPK +V+ + Q Y I + EK V+ +P + K
Sbjct: 444 PPKREVVVYAPLCNKQEIFYTAIVNRTIANMFGSCEKETVELSPTGRPK 492
Score = 40 (19.1 bits), Expect = 2.9e-32, Sum P(2) = 2.9e-32
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 66 IIDEAQRMKDRESVLARDLDRYRCQRRLL 94
+++EAQ+ DRES ++ RYR + LL
Sbjct: 32 MLEEAQKSWDREST---EI-RYRRLQHLL 56
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 662 (238.1 bits), Expect = 2.9e-61, Sum P(3) = 2.9e-61
Identities = 171/491 (34%), Positives = 259/491 (52%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W +E +W+PS+ I +VG KD R+ E+ +++V VT+YE ++ ++S K W+
Sbjct: 226 WMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWR 285
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+ P+VF++
Sbjct: 286 YLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAD 345
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F WF T N D +K ++ RLH +L+PF+LRR DVE SLPPK
Sbjct: 346 DFDSWFD--------TKNCLGD----QK---LVERLHAVLKPFLLRRIKTDVEKSLPPKK 390
Query: 184 SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 243
I + +S +Q +W +D + ++ K L N M+LRK
Sbjct: 391 EIKIYLGLSKMQR---EWYTKILMKDIDVLNSSGKMDK---------MRLLNILMQLRKC 438
Query: 244 CNHPLL------NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 297
CNHP L PY +D + +V + GK+ +LD++L KL+ G RVL+FS MT+LLD
Sbjct: 439 CNHPYLFDGAEPGPPYTTD---EHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLD 495
Query: 298 ILEEYLQWRQLVYRRIDGTTSLEDRES------------AIVDFNSHDSDCFIFLLSIRA 345
ILE+Y WR Y R+DG T E+RE AI FN+ +S FIF+LS RA
Sbjct: 496 ILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRA 555
Query: 346 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM-------EAVVDKI 398
G G+NL SAD VI+YD D NP+ + QA+ RAHRIGQK+ V+V + E +V++
Sbjct: 556 GGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERA 615
Query: 399 SSHQKEDEL--RSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA--GRF 454
+ D + + G +D + + K+ + I + + ++ DE I R
Sbjct: 616 EIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKESELTDEDITTILERG 675
Query: 455 DQRTTHEERRM 465
+++T R+
Sbjct: 676 EKKTAEMNERL 686
Score = 37 (18.1 bits), Expect = 2.9e-61, Sum P(3) = 2.9e-61
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 879 QRRCKNVISKLQR 891
QRRC +IS +++
Sbjct: 992 QRRCNTLISLIEK 1004
Score = 37 (18.1 bits), Expect = 2.9e-61, Sum P(3) = 2.9e-61
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 756 VERPEERSCT-DTPLHR-GDSSLLPFQMD 782
+ER E+++ + L + G+SSL F+MD
Sbjct: 672 LERGEKKTAEMNERLQKMGESSLRNFRMD 700
>DICTYBASE|DDB_G0284171 [details] [associations]
symbol:DDB_G0284171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 dictyBase:DDB_G0284171
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0004003 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907
KO:K11367 RefSeq:XP_638708.1 ProteinModelPortal:Q54Q16
STRING:Q54Q16 EnsemblProtists:DDB0220640 GeneID:8624452
KEGG:ddi:DDB_G0284171 InParanoid:Q54Q16 OMA:DINATEF
ProtClustDB:CLSZ2732060 Uniprot:Q54Q16
Length = 1917
Score = 478 (173.3 bits), Expect = 3.2e-61, Sum P(4) = 3.2e-61
Identities = 112/239 (46%), Positives = 152/239 (63%)
Query: 156 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 215
I +LH +L+P +LRR +DVE SLPPK +LR +S +Q Y WI T + E
Sbjct: 961 IAQLHSVLKPHLLRRIKKDVEKSLPPKTERILRVDLSNVQKKYYKWI-LTKNFQ---ELN 1016
Query: 216 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL--NYPYFSDL-SKDFL---VKSCGKL 269
K + +K TL N EL+KTCNHP L N +L +KD L +++ GKL
Sbjct: 1017 KGKGEKT---------TLLNIMTELKKTCNHPYLYQNARDECELGAKDLLDSMIRASGKL 1067
Query: 270 WILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 329
+LD++LI+L+ TGHRVL+FS M ++LDIL +YL+ R ++R+DG+ S E R A+ F
Sbjct: 1068 VLLDKLLIRLKETGHRVLIFSQMVRMLDILADYLKGRSFQFQRLDGSMSREKRSQAMDRF 1127
Query: 330 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
N+ DS F FLLS +A G G+NL +ADTVII+D D NP+N+ QA ARAHRIGQK V +
Sbjct: 1128 NAVDSPDFCFLLSTKAGGLGINLSTADTVIIFDSDWNPQNDLQAEARAHRIGQKNHVNI 1186
Score = 236 (88.1 bits), Expect = 3.2e-61, Sum P(4) = 3.2e-61
Identities = 52/135 (38%), Positives = 71/135 (52%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRS--RLFSQEVA------ALKFNVLVTTYEFIMYDRS 55
WQ E KW P+++ I Y G R RL+ L FNVL+TTY+FI+ D++
Sbjct: 819 WQREFAKWAPAMNVIVYTGTGQSRDIIRLYEFYTTNRLGKKKLNFNVLLTTYDFILKDKN 878
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L + W+++ +DEA R+K+ ESVL L Y RLL+TGTPLQN
Sbjct: 879 TLGTIKWEFLAVDEAHRLKNSESVLHEVLKLYNTTNRLLVTGTPLQNSLKELWNLLNFLM 938
Query: 116 PEVFDNRKAFHDWFS 130
P F + K F D +S
Sbjct: 939 PNKFTSLKDFQDQYS 953
Score = 64 (27.6 bits), Expect = 3.2e-61, Sum P(4) = 3.2e-61
Identities = 23/111 (20%), Positives = 48/111 (43%)
Query: 727 HDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHR--GDSSLLPFQMDNK 784
+D+D DE ++ + K++++ R + ++ E + +P G S+ P +M +
Sbjct: 1643 NDKDNDNDEDYMEEEEKKEKTKNTRTKKRIKSEELQKEILSPKKTSFGRLSVPPNKMGER 1702
Query: 785 YPAQLRTDTEMKAHGESNSLRHDQ--SEPSSKSRRNLPSRKIANAPKSRAS 833
P++ T T S S R+ + S+ R+ S + R+S
Sbjct: 1703 SPSKSTTTTTTTTTSSSKSSRNSKHHSDDDDDDYRDKDSNSGRGRGRGRSS 1753
Score = 54 (24.1 bits), Expect = 3.5e-60, Sum P(4) = 3.5e-60
Identities = 38/205 (18%), Positives = 67/205 (32%)
Query: 527 LRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIG 586
L S K+++ T S K +K + GE + +KRG K K+ KEV +
Sbjct: 1552 LLKSAKDISKTTNKKSSKQTKE--------KEEGEFKIPKKRGRKSKEI---KEVSNN-N 1599
Query: 587 EYSEASSDERNGYPVQXXXXXXXXXXXXXYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRP 646
++ + + NG S+ D +++ + DY+
Sbjct: 1600 HNNKETKENNNG---DNNNNNNNNNSSNNRKRTTNNKYSDDDDDDDNDKDNDNDEDYMEE 1656
Query: 647 SENTRNNHVVEEAXXXXXXXXXRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEE 706
E + +I+SP FG LS P + +R P +
Sbjct: 1657 EEKKEKT---KNTRTKKRIKSEELQKEILSP-KKTSFGRLSV---PPNKMGERSPSKSTT 1709
Query: 707 GEIAVSGDSHMDHQQSGSWTHDRDE 731
+ S + S + D D+
Sbjct: 1710 TTTTTTTSSSKSSRNSKHHSDDDDD 1734
Score = 48 (22.0 bits), Expect = 9.3e-60, Sum P(3) = 9.3e-60
Identities = 15/78 (19%), Positives = 36/78 (46%)
Query: 472 HDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRAST 531
H+ + + +D L++ + ++ ++ +E F + + I + + K+L +
Sbjct: 1768 HESDEEDDKYYDKNLLRKCQQYLSPIKELLENFRSLSDSKVQISREEKVSKTKKYLLSLG 1827
Query: 532 KEVNATIANLSKKPSKNI 549
KE++ L +K S NI
Sbjct: 1828 KEISII---LDEKKSANI 1842
Score = 46 (21.3 bits), Expect = 3.2e-61, Sum P(4) = 3.2e-61
Identities = 24/80 (30%), Positives = 39/80 (48%)
Query: 462 ERRMTLETL-LHDEERYQETVHDVPSLQEV-NR----MIARSEDEVELFDQMDEEFGWIE 515
+++M L+ L + E+ Q + P+ V N+ I + E ELF + EE IE
Sbjct: 1204 KQKMVLDHLVIQTMEKSQTAKSNTPNNSNVFNKEELEAILKFGAE-ELFKETGEEANPIE 1262
Query: 516 EMTRYDQVPKWLRASTKEVN 535
EM D++ RA T+E +
Sbjct: 1263 EMD-IDEILS--RAETREAS 1279
Score = 43 (20.2 bits), Expect = 6.7e-14, Sum P(2) = 6.7e-14
Identities = 31/162 (19%), Positives = 68/162 (41%)
Query: 788 QLRTDTEMKAHGESNS-LRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHT 846
+++ D E ++ LR D S K + + ++ K + KT LN M
Sbjct: 975 RIKKDVEKSLPPKTERILRVDLSNVQKKYYKWILTKNFQELNKGKGE-KTTLLNIMT-EL 1032
Query: 847 EDAADHFKESWDGKIANASGSSNFSAK--MSDVIQRRCKNVI-SKLQRRIEKEGHQIVPL 903
+ +H NA AK + +I+ K V+ KL R+++ GH+++ +
Sbjct: 1033 KKTCNH-----PYLYQNARDECELGAKDLLDSMIRASGKLVLLDKLLIRLKETGHRVL-I 1086
Query: 904 LTDLWKRIET-SGYVSGAGNNILDLRKIDQRVDRLEYNGVME 944
+ + + ++ + Y+ G +++D + R + + M+
Sbjct: 1087 FSQMVRMLDILADYLKGRS---FQFQRLDGSMSREKRSQAMD 1125
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 662 (238.1 bits), Expect = 5.5e-61, Sum P(3) = 5.5e-61
Identities = 171/491 (34%), Positives = 259/491 (52%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W +E +W+PS+ I +VG KD R+ E+ +++V VT+YE ++ ++S K W+
Sbjct: 247 WMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWR 306
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+ P+VF++
Sbjct: 307 YLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAD 366
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F WF T N D +K ++ RLH +L+PF+LRR DVE SLPPK
Sbjct: 367 DFDSWFD--------TKNCLGD----QK---LVERLHAVLKPFLLRRIKTDVEKSLPPKK 411
Query: 184 SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 243
I + +S +Q +W +D + ++ K L N M+LRK
Sbjct: 412 EIKIYLGLSKMQR---EWYTKILMKDIDVLNSSGKMDK---------MRLLNILMQLRKC 459
Query: 244 CNHPLL------NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 297
CNHP L PY +D + +V + GK+ +LD++L KL+ G RVL+FS MT+LLD
Sbjct: 460 CNHPYLFDGAEPGPPYTTD---EHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLD 516
Query: 298 ILEEYLQWRQLVYRRIDGTTSLEDRES------------AIVDFNSHDSDCFIFLLSIRA 345
ILE+Y WR Y R+DG T E+RE AI FN+ +S FIF+LS RA
Sbjct: 517 ILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRA 576
Query: 346 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM-------EAVVDKI 398
G G+NL SAD VI+YD D NP+ + QA+ RAHRIGQK+ V+V + E +V++
Sbjct: 577 GGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERA 636
Query: 399 SSHQKEDEL--RSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA--GRF 454
+ D + + G +D + + K+ + I + + ++ DE I R
Sbjct: 637 EIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFASKESELTDEDITTILERG 696
Query: 455 DQRTTHEERRM 465
+++T R+
Sbjct: 697 EKKTAEMNERL 707
Score = 39 (18.8 bits), Expect = 5.5e-61, Sum P(3) = 5.5e-61
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 879 QRRCKNVISKLQRRIEKEGHQI 900
QRRC +IS IEKE +I
Sbjct: 1013 QRRCNTLISL----IEKENMEI 1030
Score = 37 (18.1 bits), Expect = 5.5e-61, Sum P(3) = 5.5e-61
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 756 VERPEERSCT-DTPLHR-GDSSLLPFQMD 782
+ER E+++ + L + G+SSL F+MD
Sbjct: 693 LERGEKKTAEMNERLQKMGESSLRNFRMD 721
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 376 (137.4 bits), Expect = 8.9e-61, Sum P(2) = 8.9e-61
Identities = 97/235 (41%), Positives = 137/235 (58%)
Query: 209 RVDPEDEKRR--VQKNPIYQAKVYKTLNNRCMELRKTCNHP-LLNYPYFSDLSKDF---- 261
R E K R V+ + ++V L N M LRK CNHP L+ YP ++ F
Sbjct: 534 RTQEEVVKERPVVEVSMPMDSEVNLKLQNIMMLLRKCCNHPYLIEYP-LDPATQQFKVDE 592
Query: 262 -LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 320
LVK+ GK +LDR+L +L++ GH+VL+FS MT +LDIL +Y R + R+DG+ S
Sbjct: 593 DLVKNSGKFLLLDRMLPELKKRGHKVLMFSQMTMMLDILMDYCYLRGFKFSRLDGSMSYS 652
Query: 321 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 380
DRE + FN+ D + F+FL+S RA G G+NL +ADTVIIYD D NP+++ QA R HRI
Sbjct: 653 DREENMHQFNN-DPEVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRI 711
Query: 381 GQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRN 435
GQ + V V+Y + I QK E R+ LE + K+++ G GL ++
Sbjct: 712 GQTKPV-VVYRLVTANTID--QKIVE-RAAAKRKLEKLIIHKNQFKGGKSGLAQS 762
Score = 335 (123.0 bits), Expect = 8.9e-61, Sum P(2) = 8.9e-61
Identities = 80/230 (34%), Positives = 123/230 (53%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQ---EVAALKFN-VLVTTYEFIMYDRSKLSK 59
W SE ++ P + + Y GA+ +R +L + +LK + V++T++E M DR+ L
Sbjct: 285 WMSEFKRFTPEIPLMLYHGAQQERRKLVRKIHGRQGSLKIHPVVITSFEIAMRDRNALQS 344
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DE R+K+ L R+L R+ +LLLTGTPLQN+ P+VF
Sbjct: 345 CFWKYLIVDEGHRIKNMNCRLIRELKRFNADNKLLLTGTPLQNNLAELWSLLNFLLPDVF 404
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
D+ K+F WF T A+D + EK+ I+H LHQIL PF+LRR DV +
Sbjct: 405 DDLKSFESWFDIT----SITETAEDI-IAKEKEQNILHMLHQILTPFLLRRLKSDVALEV 459
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLR-VDPEDEKRRVQKNPIYQAK 228
PPK +V+ ++ Q Y I T+R + +E+ V+ +P + K
Sbjct: 460 PPKREVVVYAPLAKKQETFYTAI-VNRTIRNLLGNNEEEVVELSPTGRPK 508
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 659 (237.0 bits), Expect = 1.8e-60, Sum P(3) = 1.8e-60
Identities = 171/491 (34%), Positives = 259/491 (52%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W +E +W+PS+ I +VG KD R+ E+ +++V VT+YE ++ ++S K W+
Sbjct: 250 WMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWR 309
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+ P+VF++
Sbjct: 310 YLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAD 369
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F WF T N D +K ++ RLH +L+PF+LRR DVE SLPPK
Sbjct: 370 DFDSWFD--------TKNCLGD----QK---LVERLHAVLKPFLLRRIKTDVEKSLPPKK 414
Query: 184 SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 243
I + +S +Q +W +D + ++ K L N M+LRK
Sbjct: 415 EIKIYLGLSKMQR---EWYTKILMKDIDVLNSAGKMDK---------MRLLNILMQLRKC 462
Query: 244 CNHPLL------NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 297
CNHP L PY +D + +V + GK+ +LD++L KL+ G RVL+FS MT+LLD
Sbjct: 463 CNHPYLFDGAEPGPPYTTD---EHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLD 519
Query: 298 ILEEYLQWRQLVYRRIDGTTSLEDRES------------AIVDFNSHDSDCFIFLLSIRA 345
ILE+Y WR Y R+DG T E+RE+ AI FN +S FIF+LS RA
Sbjct: 520 ILEDYCMWRGYEYCRLDGQTPHEERENGFLQIYFRRRREAIEAFNVPNSSRFIFMLSTRA 579
Query: 346 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM-------EAVVDKI 398
G G+NL SAD VI+YD D NP+ + QA+ RAHRIGQK+ V+V + E +V++
Sbjct: 580 GGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERA 639
Query: 399 SSHQKEDEL--RSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA--GRF 454
+ D + + G +D + + K+ + I + + ++ DE I R
Sbjct: 640 EIKLRLDSIVIQQGRLIDQQSNKMAKEEMLQMIRHGATHVFASKESELTDEDITTLLERG 699
Query: 455 DQRTTHEERRM 465
+++T R+
Sbjct: 700 ERKTAEMNERL 710
Score = 39 (18.8 bits), Expect = 1.8e-60, Sum P(3) = 1.8e-60
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 879 QRRCKNVISKLQRRIEKEGHQI 900
QRRC +IS IEKE +I
Sbjct: 1016 QRRCNTLISL----IEKENMEI 1033
Score = 37 (18.1 bits), Expect = 1.8e-60, Sum P(3) = 1.8e-60
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 756 VERPEERSCT-DTPLHR-GDSSLLPFQMDNK 784
+ER E ++ + L + G+SSL F+MD +
Sbjct: 696 LERGERKTAEMNERLQKMGESSLRNFRMDTE 726
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 658 (236.7 bits), Expect = 1.9e-60, Sum P(3) = 1.9e-60
Identities = 171/491 (34%), Positives = 258/491 (52%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W +E +W+PS+ I +VG KD R+ E+ +++V VT+YE ++ ++S K W+
Sbjct: 250 WMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWR 309
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+ P+VF++
Sbjct: 310 YLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAD 369
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F WF T N D +K ++ RLH +L+PF+LRR DVE SLPPK
Sbjct: 370 DFDSWFD--------TKNCLGD----QK---LVERLHAVLKPFLLRRIKTDVEKSLPPKK 414
Query: 184 SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 243
I + +S +Q +W +D + ++ K L N M+LRK
Sbjct: 415 EIKIYLGLSKMQR---EWYTKILMKDIDVLNSAGKMDK---------MRLLNILMQLRKC 462
Query: 244 CNHPLL------NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 297
CNHP L PY +D + +V + GK+ +LD++L KL+ G RVL+FS MT+LLD
Sbjct: 463 CNHPYLFDGAEPGPPYTTD---EHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLD 519
Query: 298 ILEEYLQWRQLVYRRIDGTTSLEDRES------------AIVDFNSHDSDCFIFLLSIRA 345
ILE+Y WR Y R+DG T E+RE AI FN +S FIF+LS RA
Sbjct: 520 ILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVELLGQREAIEAFNVPNSSRFIFMLSTRA 579
Query: 346 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM-------EAVVDKI 398
G G+NL SAD VI+YD D NP+ + QA+ RAHRIGQK+ V+V + E +V++
Sbjct: 580 GGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERA 639
Query: 399 SSHQKEDEL--RSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA--GRF 454
+ D + + G +D + + K+ + I + + ++ DE I R
Sbjct: 640 EIKLRLDSIVIQQGRLIDQQSNKMAKEEMLQMIRHGATHVFASKESELTDEDITTLLERG 699
Query: 455 DQRTTHEERRM 465
+++T R+
Sbjct: 700 ERKTAEMNERL 710
Score = 39 (18.8 bits), Expect = 1.9e-60, Sum P(3) = 1.9e-60
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 879 QRRCKNVISKLQRRIEKEGHQI 900
QRRC +IS IEKE +I
Sbjct: 1016 QRRCNTLISL----IEKENMEI 1033
Score = 37 (18.1 bits), Expect = 1.9e-60, Sum P(3) = 1.9e-60
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 756 VERPEERSCT-DTPLHR-GDSSLLPFQMDNK 784
+ER E ++ + L + G+SSL F+MD +
Sbjct: 696 LERGERKTAEMNERLQKMGESSLRNFRMDTE 726
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 658 (236.7 bits), Expect = 2.5e-60, Sum P(3) = 2.5e-60
Identities = 171/491 (34%), Positives = 258/491 (52%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W +E +W+PS+ I +VG KD R+ E+ +++V VT+YE ++ ++S K W+
Sbjct: 250 WMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWR 309
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+ P+VF++
Sbjct: 310 YLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAD 369
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F WF T N D +K ++ RLH +L+PF+LRR DVE SLPPK
Sbjct: 370 DFDSWFD--------TKNCLGD----QK---LVERLHAVLKPFLLRRIKTDVEKSLPPKK 414
Query: 184 SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 243
I + +S +Q +W +D + ++ K L N M+LRK
Sbjct: 415 EIKIYLGLSKMQR---EWYTKILMKDIDVLNSAGKMDK---------MRLLNILMQLRKC 462
Query: 244 CNHPLL------NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 297
CNHP L PY +D + +V + GK+ +LD++L KL+ G RVL+FS MT+LLD
Sbjct: 463 CNHPYLFDGAEPGPPYTTD---EHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLD 519
Query: 298 ILEEYLQWRQLVYRRIDGTTSLEDRES------------AIVDFNSHDSDCFIFLLSIRA 345
ILE+Y WR Y R+DG T E+RE AI FN +S FIF+LS RA
Sbjct: 520 ILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVELLGQREAIEAFNVPNSSRFIFMLSTRA 579
Query: 346 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM-------EAVVDKI 398
G G+NL SAD VI+YD D NP+ + QA+ RAHRIGQK+ V+V + E +V++
Sbjct: 580 GGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERA 639
Query: 399 SSHQKEDEL--RSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA--GRF 454
+ D + + G +D + + K+ + I + + ++ DE I R
Sbjct: 640 EIKLRLDSIVIQQGRLIDQQSNKMAKEEMLQMIRHGATHVFASKESELTDEDITTLLERG 699
Query: 455 DQRTTHEERRM 465
+++T R+
Sbjct: 700 ERKTAEMNERL 710
Score = 39 (18.8 bits), Expect = 2.5e-60, Sum P(3) = 2.5e-60
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 879 QRRCKNVISKLQRRIEKEGHQI 900
QRRC +IS IEKE +I
Sbjct: 1016 QRRCNTLISL----IEKENMEI 1033
Score = 37 (18.1 bits), Expect = 2.5e-60, Sum P(3) = 2.5e-60
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 756 VERPEERSCT-DTPLHR-GDSSLLPFQMDNK 784
+ER E ++ + L + G+SSL F+MD +
Sbjct: 696 LERGERKTAEMNERLQKMGESSLRNFRMDTE 726
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 651 (234.2 bits), Expect = 4.2e-60, Sum P(2) = 4.2e-60
Identities = 170/491 (34%), Positives = 259/491 (52%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W +E +W+PS+ I +VG KD R+ E+ +++V VT+YE ++ ++S K W+
Sbjct: 227 WMNEFKRWVPSLRVICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWR 286
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+ P+VF++
Sbjct: 287 YLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAD 346
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F WF T N D +K ++ RLH +L+PF+LRR DVE SLPPK
Sbjct: 347 DFDSWFD--------TKNCLGD----QK---LVERLHAVLKPFLLRRIKTDVEKSLPPKK 391
Query: 184 SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 243
I + +S +Q +W +D + ++ K L N M+LRK
Sbjct: 392 EIKIYLGLSKMQR---EWYTKILMKDIDVLNSSGKMDK---------MRLLNILMQLRKC 439
Query: 244 CNHPLL------NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 297
CNHP L PY +D + +V + GK+ LD++L +++ G RVL+FS MT+LLD
Sbjct: 440 CNHPYLFDGAEPGPPYTTD---EHIVSNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLD 496
Query: 298 ILEEYLQWRQLVYRRIDGTTSLEDRES------------AIVDFNSHDSDCFIFLLSIRA 345
ILE+Y WR Y R+DG T E+RE+ AI FN+ +S FIF+LS RA
Sbjct: 497 ILEDYCMWRGYEYCRLDGQTPHEERENLFLHKHNLFSTEAIEAFNAPNSSKFIFMLSTRA 556
Query: 346 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM-------EAVVDKI 398
G G+NL SAD VI+YD D NP+ + QA+ RAHRIGQK+ V+V + E +V++
Sbjct: 557 GGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERA 616
Query: 399 SSHQKEDEL--RSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADE--VINAGRF 454
+ D + + G +D + + K+ + I + + ++ DE V R
Sbjct: 617 EIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFACKESELTDEDIVTILERG 676
Query: 455 DQRTTHEERRM 465
+++T RM
Sbjct: 677 EKKTAEMNERM 687
Score = 39 (18.8 bits), Expect = 4.2e-60, Sum P(2) = 4.2e-60
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 879 QRRCKNVISKLQRRIEKEGHQI 900
QRRC +IS IEKE +I
Sbjct: 993 QRRCNTLISL----IEKENMEI 1010
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 623 (224.4 bits), Expect = 5.4e-60, P = 5.4e-60
Identities = 151/434 (34%), Positives = 235/434 (54%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAAL---KFNVLVTTYEFIMYDRSKL 57
+S W +E+ ++ PS++ I Y G K+QR L + + KF +++T+YE M D ++
Sbjct: 262 LSNWFNEIARFTPSINAIIYHGDKNQRDELRRKHMPKTVGPKFPIVITSYEVAMNDAKRI 321
Query: 58 SK-VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXP 116
+ WKY++IDE R+K+ + L R+L + +LLLTGTPLQN+ P
Sbjct: 322 LRHYPWKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFILP 381
Query: 117 EVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVE 176
++F + F WF F ++ ++ E +++ ++ +LH IL PF+LRR DVE
Sbjct: 382 DIFTSHDEFESWFD--FSEKNKNEATKEE--EEKRRAQVVSKLHGILRPFILRRMKCDVE 437
Query: 177 GSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNR 236
SLP K I++ M+ Q + + TL + R Q ++ K LNN
Sbjct: 438 LSLPRKKEIIMYATMTDHQKKFQEHL-VNNTLEAHLGENAIRGQG---WKGK----LNNL 489
Query: 237 CMELRKTCNHP-LL----NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFST 291
++LRK CNHP LL + Y ++ +V CGK +L+R+L++L H+VL+FS
Sbjct: 490 VIQLRKNCNHPDLLQGQIDGSYLYPPVEE-IVGQCGKFRLLERLLVRLFANNHKVLIFSQ 548
Query: 292 MTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLN 351
TKLLDI++ Y + RIDG+ L++R I DF+ S C IFLLS RA G G+N
Sbjct: 549 WTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTRAGGLGIN 608
Query: 352 LQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGG 411
L +ADT I+YD D NP+ + QA+ R HRIGQ + V V Y + I + + R+
Sbjct: 609 LTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHV-YRLSTAQSIETRVLK---RAYS 664
Query: 412 TVDLEDDLAGKDRY 425
+ LE + G+ ++
Sbjct: 665 KLKLEHVVIGQGQF 678
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 467 (169.5 bits), Expect = 9.1e-59, Sum P(3) = 9.1e-59
Identities = 108/236 (45%), Positives = 146/236 (61%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 218
LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI T + + K
Sbjct: 682 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI-LTRNYKALSKGSKGS 740
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------YFSDLSKDFLVKSCGKLWIL 272
N MEL+K CNH L P Y + L++S GKL +L
Sbjct: 741 TSG-----------FLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQHLIRSSGKLILL 789
Query: 273 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332
D++LI+L+ G+RVL+FS M ++LDIL EYL++RQ ++R+DG+ E R+ A+ FN+
Sbjct: 790 DKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE 849
Query: 333 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V +
Sbjct: 850 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNI 905
Score = 226 (84.6 bits), Expect = 9.1e-59, Sum P(3) = 9.1e-59
Identities = 45/132 (34%), Positives = 75/132 (56%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRS 55
++ WQ E+ W P ++ + Y+G R+ + + E LKFN+L+TTYE ++ D+S
Sbjct: 538 LTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKS 597
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L ++W +I +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 598 FLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIM 657
Query: 116 PEVFDNRKAFHD 127
PE F + + F +
Sbjct: 658 PEKFSSWEDFEE 669
Score = 58 (25.5 bits), Expect = 9.1e-59, Sum P(3) = 9.1e-59
Identities = 22/86 (25%), Positives = 38/86 (44%)
Query: 732 GEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT 791
G +E +P+ + + + ++R E R PL GD L F++ N +
Sbjct: 968 GAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKVAN-FSNMDED 1026
Query: 792 DTEMKAHGESNSLRHDQSEPSSKSRR 817
D E++ E NS ++ P S+ RR
Sbjct: 1027 DIELEP--ERNSRNWEEIIPESQRRR 1050
Score = 42 (19.8 bits), Expect = 4.3e-57, Sum P(3) = 4.3e-57
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 671 LTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGE---IAVSGDS 715
LTQ + P P K L+ R L K + +L E +A +G+S
Sbjct: 1280 LTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLARKEAQRLAGAGNS 1327
>RGD|1309820 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10116 "Rattus
norvegicus" [GO:0000775 "chromosome, centromeric region"
evidence=ISO] [GO:0001655 "urogenital system development"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005721 "centromeric heterochromatin"
evidence=ISO] [GO:0006306 "DNA methylation" evidence=ISO]
[GO:0006342 "chromatin silencing" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0007275 "multicellular organismal development" evidence=ISO]
[GO:0010216 "maintenance of DNA methylation" evidence=ISO]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1309820
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 GO:GO:0006346
GO:GO:0046651 IPI:IPI00768565 PRIDE:F1M8B3
Ensembl:ENSRNOT00000017812 OMA:XVERVEL Uniprot:F1M8B3
Length = 494
Score = 383 (139.9 bits), Expect = 6.7e-58, Sum P(2) = 6.7e-58
Identities = 103/275 (37%), Positives = 158/275 (57%)
Query: 209 RVDPEDEKRR--VQKNPIYQAKVYKTLNNRCMELRKTCNHP-LLNYPYFSDLSKDF---- 261
++ PE ++ R V+ N +++V L N M LRK CNHP ++ YP ++++F
Sbjct: 190 QIQPEVKRERTVVEGNIPIESEVNLKLQNIMMLLRKCCNHPYMIEYP-IDPVTQEFKIDE 248
Query: 262 -LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 320
LV + GK ILDR+L +L++ H+VL+FS MT +LDIL +Y R + R+DG+ S
Sbjct: 249 ELVTNSGKFLILDRMLPELKKRCHKVLVFSQMTSMLDILMDYCHLRNFTFSRLDGSMSYS 308
Query: 321 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 380
+RE I FN+ D + F+FL+S RA G G+NL +ADTVIIYD D NP+++ QA R HRI
Sbjct: 309 EREKNIYSFNT-DPEVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRI 367
Query: 381 GQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQY 440
GQ + V V+Y + I QK E R+ LE + K+ + G GL ++ + +
Sbjct: 368 GQTKPV-VVYRLVTANTID--QKIVE-RAAAKRKLEKLIIHKNHFKGGQSGLSQS--KNF 421
Query: 441 KIDMADEVINAGRFDQRTTHEERRMTLETLLHDEE 475
+D A E++ R E + + E ++ DE+
Sbjct: 422 -LD-AKELMEL--LKSRDYEREVKGSREKVISDED 452
Score = 253 (94.1 bits), Expect = 6.7e-58, Sum P(2) = 6.7e-58
Identities = 58/167 (34%), Positives = 85/167 (50%)
Query: 62 WKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDN 121
WKY+I+DE R+K+ + L R+L R+ +LLLTGTPLQN+ P+VFD+
Sbjct: 4 WKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDD 63
Query: 122 RKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPP 181
K+F WF E +D + E++ ++H LHQIL PF+LRR DV +PP
Sbjct: 64 LKSFESWFDITSLSE-----TAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPP 118
Query: 182 KVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 228
K +V+ + Q Y I + EK V+ +P + K
Sbjct: 119 KREVVVYAPLCNKQEIFYTAIVNRTIANMFGSCEKETVELSPTGRPK 165
Score = 42 (19.8 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 13/50 (26%), Positives = 30/50 (60%)
Query: 703 ELEEGEIAVSGDSHMDHQQSGSWTH-DRDEGEDEQVL---QPKIKRKRSI 748
E E E++ +G ++S +++ D+ E E+++ QP++KR+R++
Sbjct: 152 EKETVELSPTGRPKRRSRKSINYSELDQFPSELEKLISQIQPEVKRERTV 201
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 349 (127.9 bits), Expect = 2.2e-57, Sum P(2) = 2.2e-57
Identities = 79/255 (30%), Positives = 134/255 (52%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRS---RLFSQEVAALK---FNVLVTTYEFIMYDR 54
++ W E +++P + Y G R R +SQ+ + F+V++T+Y+ ++ D
Sbjct: 579 LNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDV 638
Query: 55 SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXX 114
+V W+Y+++DEAQ +K SV + L +++C+ RLLLTGTP+QN
Sbjct: 639 KYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFI 698
Query: 115 XPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVED 174
P +FD+ + F++WFS+ + +A D E + + RLH IL+PFMLRR +D
Sbjct: 699 MPTLFDSHEEFNEWFSKDIESHAENKSAID---ENQ-----LSRLHMILKPFMLRRIKKD 750
Query: 175 VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLN 234
VE L K+ I++ C++++ Q +Y +K ++ ED + + +L
Sbjct: 751 VENELSDKIEILMYCQLTSRQKLLYQALKN----KISIEDLLQSSMGSTQQAQNTTSSLM 806
Query: 235 NRCMELRKTCNHPLL 249
N M+ RK CNHP L
Sbjct: 807 NLVMQFRKVCNHPEL 821
Score = 340 (124.7 bits), Expect = 2.2e-57, Sum P(2) = 2.2e-57
Identities = 94/265 (35%), Positives = 149/265 (56%)
Query: 259 KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 318
K+ L+ GKL+ LD +L +L+ GHRVL++S MT+++D+LEEY+ +R+ Y R+DG++
Sbjct: 1093 KESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1152
Query: 319 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 378
+ +R + DF + + D F+FLLS RA G G+NL +ADTVI YD D NP ++QA+ RAH
Sbjct: 1153 ISERRDMVADFQNRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1211
Query: 379 RIGQKREVKV---IYMEAVVDKISSHQKE-DELR----SGGTVDLEDDLAGKDRYIGSIE 430
R+GQ ++V V I + ++I KE E++ SGG D L K+ + S+
Sbjct: 1212 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFK-PDTLKPKE--VVSL- 1267
Query: 431 GLIRNNIQQYKIDMADEVINAGRFDQRTTH-EERRMTLETLLHDEERYQETVHDVPSLQE 489
L+ + + K+ + E R + T +ER+ E + E++ +E D +E
Sbjct: 1268 -LLDDEELEKKLRLRQE---EKRQQEETNRVKERKRKREK--YAEKKKKEDELDGKRRKE 1321
Query: 490 -VNRMI--ARSEDEVELFDQMDEEF 511
VN +I S D L D+ F
Sbjct: 1322 GVNLVIPFVPSADNSNLSADGDDSF 1346
Score = 41 (19.5 bits), Expect = 5.4e-26, Sum P(2) = 5.4e-26
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 565 ERKRGPKGKKYPNYKEVDDEI 585
ERKR K +KY K+ +DE+
Sbjct: 1296 ERKR--KREKYAEKKKKEDEL 1314
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 348 (127.6 bits), Expect = 2.9e-57, Sum P(2) = 2.9e-57
Identities = 79/255 (30%), Positives = 134/255 (52%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRS---RLFSQEVAALK---FNVLVTTYEFIMYDR 54
++ W E +++P + Y G R R +SQ+ + F+V++T+Y+ ++ D
Sbjct: 582 LNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDV 641
Query: 55 SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXX 114
+V W+Y+++DEAQ +K SV + L +++C+ RLLLTGTP+QN
Sbjct: 642 KYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFI 701
Query: 115 XPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVED 174
P +FD+ + F++WFS+ + +A D E + + RLH IL+PFMLRR +D
Sbjct: 702 MPTLFDSHEEFNEWFSKDIESHAENKSAID---ENQ-----LSRLHMILKPFMLRRIKKD 753
Query: 175 VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLN 234
VE L K+ I++ C++++ Q +Y +K ++ ED + + +L
Sbjct: 754 VENELSDKIEILMYCQLTSRQKLLYQALKN----KISIEDLLQSSMGSTQQAQTTTSSLM 809
Query: 235 NRCMELRKTCNHPLL 249
N M+ RK CNHP L
Sbjct: 810 NLVMQFRKVCNHPEL 824
Score = 340 (124.7 bits), Expect = 2.9e-57, Sum P(2) = 2.9e-57
Identities = 94/265 (35%), Positives = 149/265 (56%)
Query: 259 KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 318
K+ L+ GKL+ LD +L +L+ GHRVL++S MT+++D+LEEY+ +R+ Y R+DG++
Sbjct: 1097 KESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1156
Query: 319 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 378
+ +R + DF + + D F+FLLS RA G G+NL +ADTVI YD D NP ++QA+ RAH
Sbjct: 1157 ISERRDMVADFQNRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1215
Query: 379 RIGQKREVKV---IYMEAVVDKISSHQKE-DELR----SGGTVDLEDDLAGKDRYIGSIE 430
R+GQ ++V V I + ++I KE E++ SGG D L K+ + S+
Sbjct: 1216 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFK-PDTLKPKE--VVSL- 1271
Query: 431 GLIRNNIQQYKIDMADEVINAGRFDQRTTH-EERRMTLETLLHDEERYQETVHDVPSLQE 489
L+ + + K+ + E R + T +ER+ E + E++ +E D +E
Sbjct: 1272 -LLDDEELEKKLRLRQE---EKRQQEETNRVKERKRKREK--YAEKKKKEDELDGKRRKE 1325
Query: 490 -VNRMI--ARSEDEVELFDQMDEEF 511
VN +I S D L D+ F
Sbjct: 1326 GVNLVIPFVPSADNSNLSADGDDSF 1350
Score = 41 (19.5 bits), Expect = 7.0e-26, Sum P(2) = 7.0e-26
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 565 ERKRGPKGKKYPNYKEVDDEI 585
ERKR K +KY K+ +DE+
Sbjct: 1300 ERKR--KREKYAEKKKKEDEL 1318
>RGD|1306794 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1306794 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006338 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GeneTree:ENSGT00560000076896 OrthoDB:EOG4PG601
IPI:IPI00767719 Ensembl:ENSRNOT00000019358 UCSC:RGD:1306794
Uniprot:D4AAG9
Length = 904
Score = 457 (165.9 bits), Expect = 3.4e-57, Sum P(2) = 3.4e-57
Identities = 108/234 (46%), Positives = 144/234 (61%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 218
LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI T + + K
Sbjct: 684 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI-LTRNYKALSKGSKGS 742
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------YFSDLSKDFLVKSCGKLWIL 272
N MEL+K CNH L P Y + L++S GKL +L
Sbjct: 743 TSG-----------FLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILL 791
Query: 273 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332
D++LI+L+ G+RVL+FS M ++LDIL EYL++RQ ++R+DG+ E R A+ FN+
Sbjct: 792 DKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIG-ELRRQALDHFNAX 850
Query: 333 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 386
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V
Sbjct: 851 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQV 904
Score = 217 (81.4 bits), Expect = 3.4e-57, Sum P(2) = 3.4e-57
Identities = 43/132 (32%), Positives = 75/132 (56%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRS 55
++ WQ E+ W ++ + Y+G + R+ + + E LKFN+L+TTYE ++ D++
Sbjct: 540 LTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKA 599
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L ++W +I +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 600 FLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIM 659
Query: 116 PEVFDNRKAFHD 127
PE F + + F +
Sbjct: 660 PEKFSSWEDFEE 671
Score = 39 (18.8 bits), Expect = 1.8e-38, Sum P(2) = 1.8e-38
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLA 81
D S+ +KV K +D A+ K S+LA
Sbjct: 67 DTSRENKVQAKPPKVDGAEFWKSNPSILA 95
>MGI|MGI:88393 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=NAS]
[GO:0006338 "chromatin remodeling" evidence=IGI] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 MGI:MGI:88393 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 GO:GO:0006338 GO:GO:0006333
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 HOGENOM:HOG000207917
OMA:AETHENE OrthoDB:EOG4PG601 EMBL:L10410 EMBL:CH466630
EMBL:BC115822 IPI:IPI00107999 PIR:A47392 RefSeq:NP_031716.2
UniGene:Mm.8137 ProteinModelPortal:P40201 SMR:P40201 IntAct:P40201
STRING:P40201 PhosphoSite:P40201 PaxDb:P40201 PRIDE:P40201
Ensembl:ENSMUST00000024627 GeneID:12648 KEGG:mmu:12648
InParanoid:Q14BJ0 NextBio:281852 Bgee:P40201 CleanEx:MM_CHD1
Genevestigator:P40201 GermOnline:ENSMUSG00000023852 Uniprot:P40201
Length = 1711
Score = 467 (169.5 bits), Expect = 5.3e-57, Sum P(3) = 5.3e-57
Identities = 108/236 (45%), Positives = 146/236 (61%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 218
LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI T + + K
Sbjct: 684 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI-LTRNYKALSKGSKGS 742
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------YFSDLSKDFLVKSCGKLWIL 272
N MEL+K CNH L P Y + L++S GKL +L
Sbjct: 743 TSG-----------FLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILL 791
Query: 273 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332
D++LI+L+ G+RVL+FS M ++LDIL EYL++RQ ++R+DG+ E R+ A+ FN+
Sbjct: 792 DKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE 851
Query: 333 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V +
Sbjct: 852 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNI 907
Score = 217 (81.4 bits), Expect = 5.3e-57, Sum P(3) = 5.3e-57
Identities = 43/132 (32%), Positives = 75/132 (56%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRS 55
++ WQ E+ W ++ + Y+G + R+ + + E LKFN+L+TTYE ++ D++
Sbjct: 540 LTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKA 599
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L ++W +I +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 600 FLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIM 659
Query: 116 PEVFDNRKAFHD 127
PE F + + F +
Sbjct: 660 PEKFSSWEDFEE 671
Score = 50 (22.7 bits), Expect = 5.3e-57, Sum P(3) = 5.3e-57
Identities = 20/86 (23%), Positives = 36/86 (41%)
Query: 732 GEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT 791
G +E +P+ + + + ++R E PL GD L F++ N +
Sbjct: 970 GAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLSVGDELLSQFKVAN-FSNMDED 1028
Query: 792 DTEMKAHGESNSLRHDQSEPSSKSRR 817
D E++ E NS ++ P + RR
Sbjct: 1029 DIELEP--ERNSKNWEEIIPEEQRRR 1052
Score = 41 (19.5 bits), Expect = 4.6e-56, Sum P(3) = 4.6e-56
Identities = 18/70 (25%), Positives = 27/70 (38%)
Query: 690 EARPGSLSKRMPDELEEGEIAVSGDS-HMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSI 748
E RP SL + D + S H DH+ S TH + D + L R+
Sbjct: 1615 EHRP-SLEGGLKDRCHSDHRSHSDHRMHSDHRSSSEHTHHKSS-RDYRYLSDWQLDHRAA 1672
Query: 749 RVRPRHTVER 758
PR +++
Sbjct: 1673 SSGPRSPLDQ 1682
Score = 38 (18.4 bits), Expect = 2.5e-38, Sum P(3) = 2.5e-38
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLA 81
D S+ +KV K +D A+ K S+LA
Sbjct: 67 DTSRENKVQAKPPKVDGAEFWKSSPSILA 95
Score = 38 (18.4 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 351 NLQSADTVIIYDPDPNPKNEEQAVARAHRIG-----QKREVKVIYM 391
N+ D I +P+ N KN E+ + R +++E++ IYM
Sbjct: 1024 NMDEDD--IELEPERNSKNWEEIIPEEQRRRLEEEERQKELEEIYM 1067
>UNIPROTKB|J9P6Y8 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AETHENE EMBL:AAEX03002026 Ensembl:ENSCAFT00000043995
Uniprot:J9P6Y8
Length = 1782
Score = 471 (170.9 bits), Expect = 7.8e-57, Sum P(3) = 7.8e-57
Identities = 137/383 (35%), Positives = 205/383 (53%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 218
LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI T + + K
Sbjct: 668 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI-LTRNYKALSKGSKGS 726
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------YFSDLSKDFLVKSCGKLWIL 272
N MEL+K CNH L P Y + L++S GKL +L
Sbjct: 727 TSG-----------FLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILL 775
Query: 273 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332
D++LI+L+ G+RVL+FS M ++LDIL EYL++RQ ++R+DG+ E R+ A+ FN+
Sbjct: 776 DKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE 835
Query: 333 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 390
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 836 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 895
Query: 391 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKD-RYIGSIEGLIRN-NIQQYKIDM---A 445
+ V++ + + ++ V D GK + GS N ++ + A
Sbjct: 896 TKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGA 955
Query: 446 DEVINAGRFDQRTTHEERRMTLETLL-----HDEERYQETVHD-VPSLQEVNRMIARSED 499
+E+ +++ E + M ++ +L H+ E TV D + S +V ED
Sbjct: 956 EELFKEPEGEEQ---EPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVANFSNMDED 1012
Query: 500 EVELFDQMDEEFGWIEEMTRYDQ 522
++EL + + + W EE+ DQ
Sbjct: 1013 DIELEPERNSK-NW-EEIIPEDQ 1033
Score = 217 (81.4 bits), Expect = 7.8e-57, Sum P(3) = 7.8e-57
Identities = 43/132 (32%), Positives = 75/132 (56%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRS 55
++ WQ E+ W ++ + Y+G + R+ + + E LKFN+L+TTYE ++ D++
Sbjct: 524 LTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKA 583
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L ++W +I +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 584 FLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIM 643
Query: 116 PEVFDNRKAFHD 127
PE F + + F +
Sbjct: 644 PEKFSSWEDFEE 655
Score = 49 (22.3 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 20/86 (23%), Positives = 36/86 (41%)
Query: 732 GEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT 791
G +E +P+ + + + ++R E PL GD L F++ N +
Sbjct: 954 GAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVAN-FSNMDED 1012
Query: 792 DTEMKAHGESNSLRHDQSEPSSKSRR 817
D E++ E NS ++ P + RR
Sbjct: 1013 DIELEP--ERNSKNWEEIIPEDQRRR 1036
Score = 45 (20.9 bits), Expect = 7.8e-57, Sum P(3) = 7.8e-57
Identities = 30/134 (22%), Positives = 54/134 (40%)
Query: 709 IAVSGDSHMDHQQSGSWTHDRDEGEDE--QVLQP--KIKRKRSIRVRPRHTV----ERPE 760
I V + D S D D+ +DE V P KIK +R RP V E E
Sbjct: 1329 IKVKEEMKSDSSPLPSEKSDEDDDKDEITSVKHPNKKIKTERDSEERPEPDVFIKKESEE 1388
Query: 761 ERSCTDTPLHRGDSSLLPFQMDNKYPAQL----RTDTEMK-AHGESNSLRHDQ-SEPSSK 814
+R + R + + D K + + + ++K A + ++ ++ +E S+
Sbjct: 1389 KREAKEKENKRELKREIKEKEDKKDIKEKDFKEKRENKVKEAIQKEKDIKEEKLNESKSE 1448
Query: 815 SRRNLPSRKIANAP 828
S+ +++AP
Sbjct: 1449 SKERSKKSSVSDAP 1462
Score = 41 (19.5 bits), Expect = 2.0e-56, Sum P(3) = 2.0e-56
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 716 HMDHQQSGSWTHDR 729
H DH+ S +TH +
Sbjct: 1712 HSDHRASSEYTHHK 1725
Score = 41 (19.5 bits), Expect = 2.0e-56, Sum P(3) = 2.0e-56
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 729 RDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLH 770
R+ E + + K ++ + + ER ++ S +D P+H
Sbjct: 1423 RENKVKEAIQKEKDIKEEKLNESKSESKERSKKSSVSDAPVH 1464
Score = 38 (18.4 bits), Expect = 3.7e-38, Sum P(3) = 3.7e-38
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLA 81
D S+ +KV K +D A+ K S+LA
Sbjct: 50 DTSRENKVQAKPPKVDGAEFWKSSPSILA 78
Score = 38 (18.4 bits), Expect = 5.8e-11, Sum P(3) = 5.8e-11
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 351 NLQSADTVIIYDPDPNPKNEEQAVA--RAHRIGQK---REVKVIYM 391
N+ D I +P+ N KN E+ + + R+ ++ +E++ IYM
Sbjct: 1008 NMDEDD--IELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYM 1051
Score = 38 (18.4 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 31/175 (17%), Positives = 68/175 (38%)
Query: 362 DPDPNPKNEEQAVARAHRIGQKREVKVIYMEA-----VVDKISSHQKEDELRSGGTVDLE 416
+PD K E + A KRE+K E + +K ++E++++ + E
Sbjct: 1377 EPDVFIKKESEEKREAKEKENKRELKREIKEKEDKKDIKEKDFKEKRENKVKEA--IQKE 1434
Query: 417 DDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEER 476
D+ K+ + + + ++ + A I A + E + +T +ER
Sbjct: 1435 KDI--KEEKLNESKSESKERSKKSSVSDAPVHITASGEPVPISEESEELDQKTFSICKER 1492
Query: 477 YQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFG-----WIEEMTRYDQVPKW 526
+ + L + ++ E ++E Q + G ++E T +Q+ +W
Sbjct: 1493 MRPVKAALKQLDRPEKGLSERE-QLEHTRQCLIKIGDHITECLKEYTNPEQIKQW 1546
>UNIPROTKB|D4AD08 [details] [associations]
symbol:Chd2 "Chromodomain helicase DNA binding protein 2
(Predicted)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:CH473980
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 KO:K11367 CTD:1106 OrthoDB:EOG4QRH36
IPI:IPI00778855 RefSeq:NP_001100993.1 UniGene:Rn.225034
Ensembl:ENSRNOT00000055829 GeneID:308738 KEGG:rno:308738
RGD:1310056 NextBio:659434 Uniprot:D4AD08
Length = 1834
Score = 446 (162.1 bits), Expect = 1.2e-56, Sum P(3) = 1.2e-56
Identities = 131/387 (33%), Positives = 203/387 (52%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 218
LH++LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI +
Sbjct: 696 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNY---------KA 746
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHP-LLNYPYFSDLSK-----DFLVKSCGKLWIL 272
+ K + N MEL+K CNH L+ P S+ L++S GKL +L
Sbjct: 747 LAKGTRGSTSGFL---NIVMELKKCCNHCYLIRAPEDSERETGQEVLQSLIRSSGKLILL 803
Query: 273 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332
D++L +L+ G+RVL+FS M ++LDIL EYL + ++R+DG+ E R+ A+ FN+
Sbjct: 804 DKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNAD 863
Query: 333 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 390
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 864 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 923
Query: 391 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 450
+ V++ + + ++ V D G+ + + G R+N + + ++
Sbjct: 924 TKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT-VLENNSG--RSNSNPFNKEELTAILK 980
Query: 451 AGRFDQRTTHEERRMTLETLLHDEE-RYQETVHDVPSLQEVNRMIARSEDEVELFDQMDE 509
G D E + + DE R ET + S + ++ S+ +V F M++
Sbjct: 981 FGAEDLFKEIEGEESEPQEMDIDEILRLAETRENEVSTSATDELL--SQFKVANFATMED 1038
Query: 510 EFGWIEEMTR--YDQV-PKWLRASTKE 533
E +EE +D++ P+ R +E
Sbjct: 1039 EEE-LEERPHKDWDEIIPEEQRKKVEE 1064
Score = 220 (82.5 bits), Expect = 1.2e-56, Sum P(3) = 1.2e-56
Identities = 44/132 (33%), Positives = 72/132 (54%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRS 55
++ WQ E W P V+ + Y+G R+ + E LKFN L+TTYE ++ D++
Sbjct: 552 LTSWQREFEIWAPEVNVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDKT 611
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L ++W ++ +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 612 VLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIM 671
Query: 116 PEVFDNRKAFHD 127
PE F+ + F +
Sbjct: 672 PEKFEFWEDFEE 683
Score = 67 (28.6 bits), Expect = 1.2e-56, Sum P(3) = 1.2e-56
Identities = 36/159 (22%), Positives = 65/159 (40%)
Query: 670 RLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDR 729
+LT + PV K L+ R L K + LE+ SG+ ++ R
Sbjct: 1298 KLTDKILPVETDKKPQGKQLQTRVDYLLKLLRKGLEKKGTVTSGEEAKLKKRK-----PR 1352
Query: 730 DEGEDEQVLQPKIKRKRSIRVR-PRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKY--- 785
+ E++ P++K + + + PRH+ EE D L + + + +NK
Sbjct: 1353 VKKENKA---PRLKDEHGLELSSPRHSDNPSEEGEVKDDGLEKSPTKKKQKKKENKENKE 1409
Query: 786 -PAQLRTDTE-----MKAHGESNSLRHDQSEPSSKSRRN 818
P R D E K+ + ++ ++ SSKS+R+
Sbjct: 1410 KPVSSRKDREGDKEKKKSKDKKEKVKGGDAKSSSKSKRS 1448
Score = 46 (21.3 bits), Expect = 1.9e-54, Sum P(3) = 1.9e-54
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 557 VDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYP 600
V SGE +KR P+ KK + DE G E SS + P
Sbjct: 1338 VTSGEEAKLKKRKPRVKKENKAPRLKDEHG--LELSSPRHSDNP 1379
Score = 42 (19.8 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 34/159 (21%), Positives = 62/159 (38%)
Query: 703 ELEEGEIAVSG-DSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEE 761
E E E++ S D + + ++ DE E E+ +P I R VE EE
Sbjct: 1010 ETRENEVSTSATDELLSQFKVANFATMEDEEELEE--RPHKDWDEIIPEEQRKKVEE-EE 1066
Query: 762 RSCTDTPLHRGDSSLLPFQMDNKYPAQLR---TDTEMKAHGESNSLRHDQSEPSSKSRRN 818
R ++ +LP + AQ +DTE K + +S +++ S ++
Sbjct: 1067 RQKELEEIY-----MLPRIRSSTKKAQTNDSDSDTESKRQAQRSSASESETDDSDDDKK- 1120
Query: 819 LPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESW 857
PK R ++ R + + G T+ F +++
Sbjct: 1121 ---------PKRRGRPRSVRKDLVEGFTDAEIRRFIKAY 1150
>UNIPROTKB|F1MGF2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:DAAA02021391
EMBL:DAAA02021392 IPI:IPI00717393 UniGene:Bt.105262
Ensembl:ENSBTAT00000034967 NextBio:20866990 Uniprot:F1MGF2
Length = 1810
Score = 472 (171.2 bits), Expect = 1.3e-56, Sum P(3) = 1.3e-56
Identities = 137/383 (35%), Positives = 205/383 (53%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 218
LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI T + + K
Sbjct: 698 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI-LTRNYKALSKGSKGS 756
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------YFSDLSKDFLVKSCGKLWIL 272
N MEL+K CNH L P Y + L++S GKL +L
Sbjct: 757 TSG-----------FLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILL 805
Query: 273 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332
D++LI+L+ G+RVL+FS M ++LDIL EYL++RQ ++R+DG+ E R+ A+ FN+
Sbjct: 806 DKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE 865
Query: 333 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 390
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 866 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 925
Query: 391 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKD-RYIGSIEGLIRN-NIQQYKIDM---A 445
+ V++ + + ++ V D GK + GS N ++ + A
Sbjct: 926 TKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGA 985
Query: 446 DEVINAGRFDQRTTHEERRMTLETLL-----HDEERYQETVHD-VPSLQEVNRMIARSED 499
+E+ +++ E + M ++ +L H+ E TV D + S +V ED
Sbjct: 986 EELFKEPEGEEQ---EPQEMDIDEILKRAETHENEAGPLTVGDELLSQFKVANFSNMDED 1042
Query: 500 EVELFDQMDEEFGWIEEMTRYDQ 522
++EL + + + W EE+ DQ
Sbjct: 1043 DIELEPERNSK-NW-EEIIPEDQ 1063
Score = 217 (81.4 bits), Expect = 1.3e-56, Sum P(3) = 1.3e-56
Identities = 43/132 (32%), Positives = 75/132 (56%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRS 55
++ WQ E+ W ++ + Y+G + R+ + + E LKFN+L+TTYE ++ D++
Sbjct: 554 LTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKA 613
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L ++W +I +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 614 FLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIM 673
Query: 116 PEVFDNRKAFHD 127
PE F + + F +
Sbjct: 674 PEKFSSWEDFEE 685
Score = 48 (22.0 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 20/86 (23%), Positives = 36/86 (41%)
Query: 732 GEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT 791
G +E +P+ + + + ++R E PL GD L F++ N +
Sbjct: 984 GAEELFKEPEGEEQEPQEMDIDEILKRAETHENEAGPLTVGDELLSQFKVAN-FSNMDED 1042
Query: 792 DTEMKAHGESNSLRHDQSEPSSKSRR 817
D E++ E NS ++ P + RR
Sbjct: 1043 DIELEP--ERNSKNWEEIIPEDQRRR 1066
Score = 42 (19.8 bits), Expect = 1.3e-56, Sum P(3) = 1.3e-56
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 716 HMDHQQSGSWTHDR 729
H DH+ S +TH +
Sbjct: 1740 HSDHRSSSEYTHHK 1753
Score = 38 (18.4 bits), Expect = 3.5e-56, Sum P(3) = 3.5e-56
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 729 RDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLH 770
R+ E + + K ++ + + ER ++ S D P+H
Sbjct: 1451 RENKVKEAIQKEKDIKEEKLSESKSESKERSKKSSVLDAPVH 1492
Score = 38 (18.4 bits), Expect = 6.3e-38, Sum P(3) = 6.3e-38
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLA 81
D S+ +KV K +D A+ K S+LA
Sbjct: 67 DNSRDNKVQAKPPKVDGAEFWKSSPSILA 95
Score = 38 (18.4 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 351 NLQSADTVIIYDPDPNPKNEEQAVA--RAHRIGQK---REVKVIYM 391
N+ D I +P+ N KN E+ + + R+ ++ +E++ IYM
Sbjct: 1038 NMDEDD--IELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYM 1081
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 352 (129.0 bits), Expect = 1.6e-56, Sum P(3) = 1.6e-56
Identities = 78/252 (30%), Positives = 134/252 (53%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSR---LFSQEVAALKFNVLVTTYEFIMYDRSKL 57
++ W E +++P + Y G R + L++Q+ F+V++T+Y+ ++ D
Sbjct: 581 LNNWHQEFTRFVPKFKVLPYWGNPHDRKKKKTLYTQDAP---FHVVITSYQLVVQDVKYF 637
Query: 58 SKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPE 117
+V W+Y+++DEAQ +K SV + L +++C+ RLLLTGTP+QN P
Sbjct: 638 QRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPT 697
Query: 118 VFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG 177
+FD+ + F++WFS+ + +A D E + + RLH IL+PFMLRR +DVE
Sbjct: 698 LFDSHEEFNEWFSKDIESHAENKSAID---ENQ-----LSRLHMILKPFMLRRIKKDVEN 749
Query: 178 SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 237
L K+ I++ C++++ Q +Y +K ++ ED + + +L N
Sbjct: 750 ELSDKIEILMYCQLTSRQKLLYQALKN----KISIEDLLQSSMGSTQQAQNTTSSLMNLV 805
Query: 238 MELRKTCNHPLL 249
M+ RK CNHP L
Sbjct: 806 MQFRKVCNHPEL 817
Score = 339 (124.4 bits), Expect = 1.6e-56, Sum P(3) = 1.6e-56
Identities = 73/173 (42%), Positives = 111/173 (64%)
Query: 259 KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 318
K+ L+ GKL+ LD +L +L+ GHRVL++S MT+++D+LEEY+ +R+ Y R+DG++
Sbjct: 1090 KESLITDSGKLYALDILLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1149
Query: 319 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 378
+ +R + DF + + D F+FLLS RA G G+NL +ADTVI YD D NP ++QA+ RAH
Sbjct: 1150 ISERRDMVADFQTRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1208
Query: 379 RIGQKREVKV---IYMEAVVDKISSHQKE-DELR----SGGTVDLEDDLAGKD 423
R+GQ ++V V I + ++I KE E++ SGG D L K+
Sbjct: 1209 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFK-PDTLKPKE 1260
Score = 42 (19.8 bits), Expect = 1.6e-56, Sum P(3) = 1.6e-56
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 558 DSGEIETERKRGPKGKKYPNYKEVDDEI 585
+S ++ ERKR K +KY K+ +DE+
Sbjct: 1287 ESNRVK-ERKR--KREKYAEKKKKEDEL 1311
>UNIPROTKB|E2QUI5 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 EMBL:AAEX03002026
RefSeq:XP_848459.1 Ensembl:ENSCAFT00000012332 GeneID:488891
KEGG:cfa:488891 NextBio:20862162 Uniprot:E2QUI5
Length = 1711
Score = 471 (170.9 bits), Expect = 1.7e-56, Sum P(3) = 1.7e-56
Identities = 137/383 (35%), Positives = 205/383 (53%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 218
LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI T + + K
Sbjct: 685 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI-LTRNYKALSKGSKGS 743
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------YFSDLSKDFLVKSCGKLWIL 272
N MEL+K CNH L P Y + L++S GKL +L
Sbjct: 744 TSG-----------FLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILL 792
Query: 273 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332
D++LI+L+ G+RVL+FS M ++LDIL EYL++RQ ++R+DG+ E R+ A+ FN+
Sbjct: 793 DKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE 852
Query: 333 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 390
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 853 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 912
Query: 391 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKD-RYIGSIEGLIRN-NIQQYKIDM---A 445
+ V++ + + ++ V D GK + GS N ++ + A
Sbjct: 913 TKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGA 972
Query: 446 DEVINAGRFDQRTTHEERRMTLETLL-----HDEERYQETVHD-VPSLQEVNRMIARSED 499
+E+ +++ E + M ++ +L H+ E TV D + S +V ED
Sbjct: 973 EELFKEPEGEEQ---EPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVANFSNMDED 1029
Query: 500 EVELFDQMDEEFGWIEEMTRYDQ 522
++EL + + + W EE+ DQ
Sbjct: 1030 DIELEPERNSK-NW-EEIIPEDQ 1050
Score = 217 (81.4 bits), Expect = 1.7e-56, Sum P(3) = 1.7e-56
Identities = 43/132 (32%), Positives = 75/132 (56%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRS 55
++ WQ E+ W ++ + Y+G + R+ + + E LKFN+L+TTYE ++ D++
Sbjct: 541 LTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKA 600
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L ++W +I +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 601 FLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIM 660
Query: 116 PEVFDNRKAFHD 127
PE F + + F +
Sbjct: 661 PEKFSSWEDFEE 672
Score = 49 (22.3 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 20/86 (23%), Positives = 36/86 (41%)
Query: 732 GEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT 791
G +E +P+ + + + ++R E PL GD L F++ N +
Sbjct: 971 GAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVAN-FSNMDED 1029
Query: 792 DTEMKAHGESNSLRHDQSEPSSKSRR 817
D E++ E NS ++ P + RR
Sbjct: 1030 DIELEP--ERNSKNWEEIIPEDQRRR 1053
Score = 41 (19.5 bits), Expect = 1.7e-56, Sum P(3) = 1.7e-56
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 716 HMDHQQSGSWTHDR 729
H DH+ S +TH +
Sbjct: 1641 HSDHRASSEYTHHK 1654
Score = 38 (18.4 bits), Expect = 8.0e-38, Sum P(3) = 8.0e-38
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLA 81
D S+ +KV K +D A+ K S+LA
Sbjct: 67 DTSRENKVQAKPPKVDGAEFWKSSPSILA 95
Score = 38 (18.4 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 351 NLQSADTVIIYDPDPNPKNEEQAVA--RAHRIGQK---REVKVIYM 391
N+ D I +P+ N KN E+ + + R+ ++ +E++ IYM
Sbjct: 1025 NMDEDD--IELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYM 1068
>UNIPROTKB|E1C1A9 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AADN02041467 EMBL:AADN02041468 EMBL:AADN02041469
EMBL:AADN02041470 IPI:IPI00575702 Ensembl:ENSGALT00000011260
Uniprot:E1C1A9
Length = 1727
Score = 450 (163.5 bits), Expect = 2.3e-56, Sum P(3) = 2.3e-56
Identities = 129/387 (33%), Positives = 203/387 (52%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 218
LH++LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI +
Sbjct: 691 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNY---------KA 741
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHP-LLNYPYFSDLSKDF-----LVKSCGKLWIL 272
+ K + N MEL+K CNH L+ P ++ L++S GKL +L
Sbjct: 742 LSKGTRGSTSGFL---NIVMELKKCCNHCYLIKPPEENERENGIETLQSLIRSSGKLILL 798
Query: 273 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332
D++L +L+ G+RVL+FS M ++LDIL EYL + ++R+DG+ E R+ A+ FN+
Sbjct: 799 DKLLTRLRDRGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNAD 858
Query: 333 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 390
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 859 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 918
Query: 391 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 450
+ V++ + + ++ V D G+ + + G R+N + + ++
Sbjct: 919 TKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT-VLDNNSG--RSNSNPFNKEELTAILK 975
Query: 451 AGRFDQRTTHEERRMTLETLLHDEE-RYQETVHDVPSLQEVNRMIARSEDEVELFDQMDE 509
G D E + + DE R ET + S + ++++ + +V F M+E
Sbjct: 976 FGAEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFK-KVANFATMEE 1034
Query: 510 EFGWIEEMTRYDQ---VPKWLRASTKE 533
E ++E + D +P+ R +E
Sbjct: 1035 EETELDERPQKDWDDIIPEEQRKKVEE 1061
Score = 217 (81.4 bits), Expect = 2.3e-56, Sum P(3) = 2.3e-56
Identities = 43/132 (32%), Positives = 71/132 (53%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRS 55
++ WQ E W P ++ + Y+G R+ + E LKFN L+TTYE ++ D++
Sbjct: 547 LTSWQREFEVWAPEINVVVYIGDLMSRNMIREYEWIHSQSKRLKFNALITTYEILLKDKA 606
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L + W ++ +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 607 VLGSISWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIM 666
Query: 116 PEVFDNRKAFHD 127
PE F+ + F +
Sbjct: 667 PEKFEFWEDFEE 678
Score = 62 (26.9 bits), Expect = 2.3e-56, Sum P(3) = 2.3e-56
Identities = 32/162 (19%), Positives = 62/162 (38%)
Query: 670 RLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDR 729
+L+ + PV K L+ R L K + +LE+ E +M + G +
Sbjct: 1295 KLSDKILPVETDKKPQGKQLQTRVDYLLKLLKKDLEKKE-------NMKDGEEGKLKKRK 1347
Query: 730 DEGEDEQVLQPKIKRKRSIRVRP-RHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQ 788
+ E PK+K + + P RH+ + EE D L + + +NK +
Sbjct: 1348 PRVKKENKA-PKVKDEHGNELSPPRHSDNQSEEGEVKDDGLDKSPVKKKQKKKENKENKE 1406
Query: 789 LRTDT--EMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAP 828
+T + E ++ E + + +P ++ K + P
Sbjct: 1407 KQTSSKKEKESDKEKKKTKEKKEKPKGGEAKSGSKGKRSQGP 1448
Score = 42 (19.8 bits), Expect = 1.0e-53, Sum P(4) = 1.0e-53
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 532 KEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIG 586
K++ + L K K++ N+ GE +KR P+ KK +V DE G
Sbjct: 1312 KQLQTRVDYLLKLLKKDLEKKENM--KDGEEGKLKKRKPRVKKENKAPKVKDEHG 1364
Score = 42 (19.8 bits), Expect = 1.0e-53, Sum P(4) = 1.0e-53
Identities = 21/88 (23%), Positives = 32/88 (36%)
Query: 716 HMDHQQSGSWTHDRD---EGEDEQVLQPKIKRKRSIR-VRPRHTVERPEERSCTDTPLHR 771
H + G W DR G Q+ + + + H +R RS D P HR
Sbjct: 1639 HFSNTDRGEWQRDRKFSYSGNSNQMWGGERHHQYEQHWYKDHHYGDR---RSRGD-P-HR 1693
Query: 772 GDSSLLPFQMDNKYP-AQLRTDTEMKAH 798
+ P + K P Q +D + + H
Sbjct: 1694 SSGNYRPNNLSRKRPYEQYSSDRDHRGH 1721
Score = 41 (19.5 bits), Expect = 1.3e-53, Sum P(4) = 1.3e-53
Identities = 28/156 (17%), Positives = 58/156 (37%)
Query: 622 APLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEAXXXXXXXXXRRLTQIVSPVSPQ 681
+P + D E+G V + G D P + + +E + + + +
Sbjct: 1368 SPPRHSDNQSEEGEVKDDGLDK-SPVKKKQKKKENKENKEKQTSSKKEKESDKEKKKTKE 1426
Query: 682 KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPK 741
K EA+ GS KR +G + ++ S + G D D+ D++
Sbjct: 1427 KKEKPKGGEAKSGSKGKR-----SQGPVHITAGS--EPVPIGE---DEDDDLDQETFSIC 1476
Query: 742 IKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLL 777
+R R ++ + +++P++ L + LL
Sbjct: 1477 KERMRPVK-KALKQLDKPDKGLTVQEQLEHTRNCLL 1511
Score = 37 (18.1 bits), Expect = 9.4e-54, Sum P(3) = 9.4e-54
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 876 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGA 920
D+I + + + +R+ E E ++P + K+ +T+ S A
Sbjct: 1049 DIIPEEQRKKVEEEERQKELEEIYMLPRIRSSTKKAQTNDSESDA 1093
Score = 37 (18.1 bits), Expect = 3.4e-53, Sum P(4) = 3.4e-53
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 565 ERKRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPV 601
+ K K KK K+ + GE S +R+ PV
Sbjct: 1413 KEKESDKEKKKTKEKKEKPKGGEAKSGSKGKRSQGPV 1449
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 340 (124.7 bits), Expect = 2.8e-56, Sum P(2) = 2.8e-56
Identities = 77/253 (30%), Positives = 132/253 (52%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRS---RLFSQEVAALK---FNVLVTTYEFIMYDR 54
++ W E +++P + Y G R + +SQ+ + F+V++T+Y+ ++ D
Sbjct: 580 LNNWHQEFSRFVPKFKVLPYWGNPHDRKVIRKFWSQKTLYTQNAPFHVVITSYQLVVQDV 639
Query: 55 SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXX 114
+V W+Y+++DEAQ +K SV + L +++C+ RLLLTGTP+QN
Sbjct: 640 KYFQRVKWQYMVLDEAQALKSSTSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFI 699
Query: 115 XPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVED 174
P +FD+ + F++WFS+ + +A D E + + RLH IL+PFMLRR +D
Sbjct: 700 MPTLFDSHEEFNEWFSKDIESHAENKSAID---ENQ-----LSRLHMILKPFMLRRIKKD 751
Query: 175 VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLN 234
VE L K+ I+ C++++ Q +Y +K ++ ED + + +L
Sbjct: 752 VENELSDKIEILTYCQLTSRQRLLYQALKN----KISIEDLLQSSMGSAQQAHSTTSSLM 807
Query: 235 NRCMELRKTCNHP 247
N M+ RK CNHP
Sbjct: 808 NLVMQFRKVCNHP 820
Score = 339 (124.4 bits), Expect = 2.8e-56, Sum P(2) = 2.8e-56
Identities = 74/173 (42%), Positives = 110/173 (63%)
Query: 259 KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 318
K+ L+ GKL LD +L +L+ GHRVL++S MT+++D+LEEY+ +R+ Y R+DG++
Sbjct: 1124 KESLITDSGKLHTLDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1183
Query: 319 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 378
+ +R + DF S +D F+FLLS RA G G+NL +ADTVI YD D NP ++QA+ RAH
Sbjct: 1184 ISERRDMVADFQSR-TDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1242
Query: 379 RIGQKREVKV---IYMEAVVDKISSHQKE-DELR----SGGTVDLEDDLAGKD 423
R+GQ ++V V I + ++I KE E++ SGG D L K+
Sbjct: 1243 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFK-PDTLKPKE 1294
Score = 43 (20.2 bits), Expect = 3.3e-25, Sum P(2) = 3.3e-25
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 680 PQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSH 716
P G + AL+ R G R+PD+ E I SG H
Sbjct: 1101 PPNPGGVMALQQRHGWSFIRIPDK--ESLITDSGKLH 1135
>UNIPROTKB|O14646 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0035064 "methylated histone residue
binding" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0006351 GO:GO:0006338
GO:GO:0004003 GO:GO:0035064 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOVERGEN:HBG005325 InterPro:IPR025260 Pfam:PF13907 CTD:1105
KO:K11367 EMBL:AF006513 EMBL:AC022121 EMBL:BC117134 IPI:IPI00297851
IPI:IPI00954192 RefSeq:NP_001261.2 UniGene:Hs.643465 PDB:2B2T
PDB:2B2U PDB:2B2V PDB:2B2W PDB:2B2Y PDB:4B4C PDBsum:2B2T
PDBsum:2B2U PDBsum:2B2V PDBsum:2B2W PDBsum:2B2Y PDBsum:4B4C
ProteinModelPortal:O14646 SMR:O14646 IntAct:O14646 STRING:O14646
PhosphoSite:O14646 PaxDb:O14646 PRIDE:O14646
Ensembl:ENST00000284049 GeneID:1105 KEGG:hsa:1105 UCSC:uc003knf.3
GeneCards:GC05M098219 H-InvDB:HIX0005061 HGNC:HGNC:1915
HPA:HPA022236 MIM:602118 neXtProt:NX_O14646 PharmGKB:PA26451
HOGENOM:HOG000207917 InParanoid:O14646 OMA:AETHENE
OrthoDB:EOG4PG601 PhylomeDB:O14646 DrugBank:DB00445
EvolutionaryTrace:O14646 GenomeRNAi:1105 NextBio:4580
ArrayExpress:O14646 Bgee:O14646 CleanEx:HS_CHD1
Genevestigator:O14646 GermOnline:ENSG00000153922 Uniprot:O14646
Length = 1710
Score = 471 (170.9 bits), Expect = 4.6e-56, Sum P(4) = 4.6e-56
Identities = 137/383 (35%), Positives = 205/383 (53%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 218
LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI T + + K
Sbjct: 686 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI-LTRNYKALSKGSKGS 744
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------YFSDLSKDFLVKSCGKLWIL 272
N MEL+K CNH L P Y + L++S GKL +L
Sbjct: 745 TSG-----------FLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILL 793
Query: 273 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332
D++LI+L+ G+RVL+FS M ++LDIL EYL++RQ ++R+DG+ E R+ A+ FN+
Sbjct: 794 DKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE 853
Query: 333 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 390
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 854 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 913
Query: 391 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKD-RYIGSIEGLIRN-NIQQYKIDM---A 445
+ V++ + + ++ V D GK + GS N ++ + A
Sbjct: 914 TKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGA 973
Query: 446 DEVINAGRFDQRTTHEERRMTLETLL-----HDEERYQETVHD-VPSLQEVNRMIARSED 499
+E+ +++ E + M ++ +L H+ E TV D + S +V ED
Sbjct: 974 EELFKEPEGEEQ---EPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVANFSNMDED 1030
Query: 500 EVELFDQMDEEFGWIEEMTRYDQ 522
++EL + + + W EE+ DQ
Sbjct: 1031 DIELEPERNSK-NW-EEIIPEDQ 1051
Score = 217 (81.4 bits), Expect = 4.6e-56, Sum P(4) = 4.6e-56
Identities = 43/132 (32%), Positives = 75/132 (56%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRS 55
++ WQ E+ W ++ + Y+G + R+ + + E LKFN+L+TTYE ++ D++
Sbjct: 542 LTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFNILLTTYEILLKDKA 601
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L ++W +I +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 602 FLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIM 661
Query: 116 PEVFDNRKAFHD 127
PE F + + F +
Sbjct: 662 PEKFSSWEDFEE 673
Score = 49 (22.3 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 20/86 (23%), Positives = 36/86 (41%)
Query: 732 GEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT 791
G +E +P+ + + + ++R E PL GD L F++ N +
Sbjct: 972 GAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVAN-FSNMDED 1030
Query: 792 DTEMKAHGESNSLRHDQSEPSSKSRR 817
D E++ E NS ++ P + RR
Sbjct: 1031 DIELEP--ERNSKNWEEIIPEDQRRR 1054
Score = 42 (19.8 bits), Expect = 4.6e-56, Sum P(4) = 4.6e-56
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 716 HMDHQQSGSWTHDR 729
H DH+ S +TH +
Sbjct: 1640 HSDHRSSSEYTHHK 1653
Score = 42 (19.8 bits), Expect = 4.6e-56, Sum P(4) = 4.6e-56
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 671 LTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSG 713
LT + P P K L+ R L K + +L + E A+SG
Sbjct: 1284 LTHKILPDDPDKKPQAKQLQTRADYLIKLLSRDLAKKE-ALSG 1325
Score = 38 (18.4 bits), Expect = 1.5e-37, Sum P(4) = 1.5e-37
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLA 81
D S+ +KV K +D A+ K S+LA
Sbjct: 67 DTSRENKVQAKPPKVDGAEFWKSSPSILA 95
Score = 38 (18.4 bits), Expect = 2.4e-10, Sum P(4) = 2.4e-10
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 351 NLQSADTVIIYDPDPNPKNEEQAVA--RAHRIGQK---REVKVIYM 391
N+ D I +P+ N KN E+ + + R+ ++ +E++ IYM
Sbjct: 1026 NMDEDD--IELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYM 1069
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 348 (127.6 bits), Expect = 5.7e-56, Sum P(3) = 5.7e-56
Identities = 79/255 (30%), Positives = 134/255 (52%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRS---RLFSQEVAALK---FNVLVTTYEFIMYDR 54
++ W E +++P + Y G R R +SQ+ + F+V++T+Y+ ++ D
Sbjct: 588 LNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDV 647
Query: 55 SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXX 114
+V W+Y+++DEAQ +K SV + L +++C+ RLLLTGTP+QN
Sbjct: 648 KYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFI 707
Query: 115 XPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVED 174
P +FD+ + F++WFS+ + +A D E + + RLH IL+PFMLRR +D
Sbjct: 708 MPTLFDSHEEFNEWFSKDIESHAENKSAID---ENQ-----LSRLHMILKPFMLRRIKKD 759
Query: 175 VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLN 234
VE L K+ I++ C++++ Q +Y +K ++ ED + + +L
Sbjct: 760 VENELSDKIEILMYCQLTSRQKLLYQALKN----KISIEDLLQSSMGSTQQAQTTTSSLM 815
Query: 235 NRCMELRKTCNHPLL 249
N M+ RK CNHP L
Sbjct: 816 NLVMQFRKVCNHPEL 830
Score = 339 (124.4 bits), Expect = 5.7e-56, Sum P(3) = 5.7e-56
Identities = 73/173 (42%), Positives = 111/173 (64%)
Query: 259 KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 318
K+ L+ GKL+ LD +L +L+ GHRVL++S MT+++D+LEEY+ +R+ Y R+DG++
Sbjct: 1103 KESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1162
Query: 319 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 378
+ +R + DF + + D F+FLLS RA G G+NL +ADTVI YD D NP ++QA+ RAH
Sbjct: 1163 ISERRDMVADFQTRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1221
Query: 379 RIGQKREVKV---IYMEAVVDKISSHQKE-DELR----SGGTVDLEDDLAGKD 423
R+GQ ++V V I + ++I KE E++ SGG D L K+
Sbjct: 1222 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFK-PDTLKPKE 1273
Score = 41 (19.5 bits), Expect = 5.7e-56, Sum P(3) = 5.7e-56
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 565 ERKRGPKGKKYPNYKEVDDEI 585
ERKR K +KY K+ +DE+
Sbjct: 1306 ERKR--KREKYAEKKKKEDEL 1324
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 348 (127.6 bits), Expect = 5.7e-56, Sum P(3) = 5.7e-56
Identities = 79/255 (30%), Positives = 134/255 (52%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRS---RLFSQEVAALK---FNVLVTTYEFIMYDR 54
++ W E +++P + Y G R R +SQ+ + F+V++T+Y+ ++ D
Sbjct: 588 LNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDV 647
Query: 55 SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXX 114
+V W+Y+++DEAQ +K SV + L +++C+ RLLLTGTP+QN
Sbjct: 648 KYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFI 707
Query: 115 XPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVED 174
P +FD+ + F++WFS+ + +A D E + + RLH IL+PFMLRR +D
Sbjct: 708 MPTLFDSHEEFNEWFSKDIESHAENKSAID---ENQ-----LSRLHMILKPFMLRRIKKD 759
Query: 175 VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLN 234
VE L K+ I++ C++++ Q +Y +K ++ ED + + +L
Sbjct: 760 VENELSDKIEILMYCQLTSRQKLLYQALKN----KISIEDLLQSSMGSTQQAQTTTSSLM 815
Query: 235 NRCMELRKTCNHPLL 249
N M+ RK CNHP L
Sbjct: 816 NLVMQFRKVCNHPEL 830
Score = 339 (124.4 bits), Expect = 5.7e-56, Sum P(3) = 5.7e-56
Identities = 73/173 (42%), Positives = 111/173 (64%)
Query: 259 KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 318
K+ L+ GKL+ LD +L +L+ GHRVL++S MT+++D+LEEY+ +R+ Y R+DG++
Sbjct: 1103 KESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1162
Query: 319 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 378
+ +R + DF + + D F+FLLS RA G G+NL +ADTVI YD D NP ++QA+ RAH
Sbjct: 1163 ISERRDMVADFQNRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1221
Query: 379 RIGQKREVKV---IYMEAVVDKISSHQKE-DELR----SGGTVDLEDDLAGKD 423
R+GQ ++V V I + ++I KE E++ SGG D L K+
Sbjct: 1222 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFK-PDTLKPKE 1273
Score = 41 (19.5 bits), Expect = 5.7e-56, Sum P(3) = 5.7e-56
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 565 ERKRGPKGKKYPNYKEVDDEI 585
ERKR K +KY K+ +DE+
Sbjct: 1306 ERKR--KREKYAEKKKKEDEL 1324
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 346 (126.9 bits), Expect = 7.3e-56, Sum P(3) = 7.3e-56
Identities = 79/255 (30%), Positives = 133/255 (52%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRS---RLFSQEVAALK---FNVLVTTYEFIMYDR 54
++ W E +++P + Y G R R +SQ+ + F+V++T+Y+ ++ D
Sbjct: 581 LNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDV 640
Query: 55 SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXX 114
+V W+Y+++DEAQ +K SV + L +++C+ RLLLTGTP+QN
Sbjct: 641 KYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFI 700
Query: 115 XPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVED 174
P +FD+ + F++WFS+ + +A D E + + RLH IL+PFMLRR +D
Sbjct: 701 MPTLFDSHEEFNEWFSKDIESHAENKSAID---ENQ-----LSRLHMILKPFMLRRIKKD 752
Query: 175 VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLN 234
VE L K+ I+ C++++ Q +Y +K ++ ED + + +L
Sbjct: 753 VENELSDKIEILTYCQLTSRQKLLYQALKN----KISIEDLLQSSMGSTQQAQNTTSSLM 808
Query: 235 NRCMELRKTCNHPLL 249
N M+ RK CNHP L
Sbjct: 809 NLVMQFRKVCNHPEL 823
Score = 339 (124.4 bits), Expect = 7.3e-56, Sum P(3) = 7.3e-56
Identities = 73/173 (42%), Positives = 111/173 (64%)
Query: 259 KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 318
K+ L+ GKL+ LD +L +L+ GHRVL++S MT+++D+LEEY+ +R+ Y R+DG++
Sbjct: 1096 KESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1155
Query: 319 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 378
+ +R + DF + + D F+FLLS RA G G+NL +ADTVI YD D NP ++QA+ RAH
Sbjct: 1156 ISERRDMVADFQTRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1214
Query: 379 RIGQKREVKV---IYMEAVVDKISSHQKE-DELR----SGGTVDLEDDLAGKD 423
R+GQ ++V V I + ++I KE E++ SGG D L K+
Sbjct: 1215 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFK-PDTLKPKE 1266
Score = 42 (19.8 bits), Expect = 7.3e-56, Sum P(3) = 7.3e-56
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 558 DSGEIETERKRGPKGKKYPNYKEVDDEI 585
+S ++ ERKR K +KY K+ +DE+
Sbjct: 1293 ESNRVK-ERKR--KREKYAEKKKKEDEL 1317
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 355 (130.0 bits), Expect = 7.3e-56, Sum P(2) = 7.3e-56
Identities = 88/258 (34%), Positives = 143/258 (55%)
Query: 259 KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 318
K+ L+ GKL++LD +L +L+ GHRVL++S MTK++D+LEEY+ R+ Y R+DG++
Sbjct: 1148 KETLITDAGKLFVLDNLLTRLKANGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSK 1207
Query: 319 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 378
+ R + DF + +D F+FLLS RA G G+NL +ADTVI YD D NP ++QA+ RAH
Sbjct: 1208 ISARRDMVADFQTR-ADIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1266
Query: 379 RIGQKREVKV---IYMEAVVDKISSHQKE-DELR----SGGTVDLEDDLAGKD--RYIGS 428
R+GQ ++V V I + ++I +E E++ SGG D L K+ +
Sbjct: 1267 RLGQTKQVTVYRLICKGTIEERILQRAREKSEIQRMVISGGNFK-PDTLKPKEVVSLLLD 1325
Query: 429 IEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLE-TLLHDEERYQETVHDVPSL 487
E + Q+ K+ + + A + +++ H ++ + + T + Q DVPS
Sbjct: 1326 DEEIEMKYRQEAKLQSSSPIPAATQSERKRRHPQKDVNMGGTTIAATSATQNPDDDVPSC 1385
Query: 488 QEVNRMIARSEDEVELFD 505
+ I + E E + D
Sbjct: 1386 SSAAKRI-KLETEEDFID 1402
Score = 320 (117.7 bits), Expect = 7.3e-56, Sum P(2) = 7.3e-56
Identities = 78/253 (30%), Positives = 127/253 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRL---FSQE---VAALKFNVLVTTYEFIMYDRSKL 57
WQ E+ +++P + Y G+ +R L + Q+ F+V++T+Y+ ++ D
Sbjct: 599 WQQEMSRFVPDFKVVPYWGSPAERKILRQFWDQKHLHTRDASFHVVITSYQLVVSDYKYF 658
Query: 58 SKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPE 117
+++ W+Y+++DEAQ +K S + L + C+ RLLL+GTP+QN P
Sbjct: 659 NRIKWQYMVLDEAQAIKSAASQRWKLLLGFSCRNRLLLSGTPIQNSMAELWALLHFIMPT 718
Query: 118 VFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG 177
+FD+ F++WFS+ + D EK+ I RLH IL+PFMLRR +DVE
Sbjct: 719 LFDSHDEFNEWFSKDIESHAENKTGID-----EKQ---ISRLHMILKPFMLRRIKKDVEN 770
Query: 178 SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQ-KNPIYQAKVYKTLNNR 236
L K+ I++ C ++ Q +Y +K +R+ ED + L N
Sbjct: 771 ELSDKIEIMVYCPLTIRQKLLYRALKQK--IRI--EDLLHLTSGSTTTSSSSSASNLMNL 826
Query: 237 CMELRKTCNHPLL 249
M+ RK CNHP L
Sbjct: 827 VMQFRKVCNHPEL 839
Score = 40 (19.1 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 22/111 (19%), Positives = 49/111 (44%)
Query: 736 QVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEM 795
Q+L+P ++ K ++ P ++V + + T + +SS+ F Y Q + +
Sbjct: 959 QLLEPMLENKLALDYMPPNSVLK----NFIFTAMTANESSVYAFGDYFTYNMQETIEHRV 1014
Query: 796 ---KAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMP 843
K + SL ++ E SK + + S ++ +++ +K L +P
Sbjct: 1015 IRSKILKKKTSLI-EEMEDVSKQKLEIESVEVQTKSNAKSDVKVTTLLLLP 1064
>FB|FBgn0250786 [details] [associations]
symbol:Chd1 "Chromodomain-helicase-DNA-binding protein 1"
species:7227 "Drosophila melanogaster" [GO:0005705 "polytene
chromosome interband" evidence=IDA] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005703 "polytene chromosome puff" evidence=IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0035042 "fertilization,
exchange of chromosomal proteins" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
EMBL:AE014134 GO:GO:0006355 GO:GO:0003677 GO:GO:0048477
GO:GO:0006351 GO:GO:0003682 GO:GO:0004386 GO:GO:0007476
InterPro:IPR016197 SUPFAM:SSF54160 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598 GO:GO:0005703
InterPro:IPR025260 Pfam:PF13907 EMBL:L77907 PIR:T13944
RefSeq:NP_477197.1 ProteinModelPortal:Q7KU24 SMR:Q7KU24
STRING:Q7KU24 PaxDb:Q7KU24 PRIDE:Q7KU24 EnsemblMetazoa:FBtr0077674
GeneID:33505 KEGG:dme:Dmel_CG3733 UCSC:CG3733-RA CTD:1105
FlyBase:FBgn0250786 GeneTree:ENSGT00560000076896 InParanoid:Q7KU24
KO:K11367 OrthoDB:EOG45MKM5 PhylomeDB:Q7KU24 ChiTaRS:CHD1
GenomeRNAi:33505 NextBio:783939 Bgee:Q7KU24 GO:GO:0005705
GO:GO:0035042 Uniprot:Q7KU24
Length = 1883
Score = 467 (169.5 bits), Expect = 9.2e-56, Sum P(3) = 9.2e-56
Identities = 147/460 (31%), Positives = 228/460 (49%)
Query: 158 RLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKR 217
RLHQ LEP++LRR +DVE SLP KV +LR M+++Q Y WI D R
Sbjct: 732 RLHQQLEPYILRRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNF------DALR 785
Query: 218 RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPY-FS--DLSKD----FLVKSCGKLW 270
+ ++ T N +EL+K CNH L P F L +D L+K GKL
Sbjct: 786 KGKRGST------STFLNIVIELKKCCNHAALIRPSEFELMGLQQDEALQTLLKGSGKLV 839
Query: 271 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 330
+LD++L +L+ TGHRVL+FS M ++LD+L +YLQ R ++R+DG+ E R A+ FN
Sbjct: 840 LLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGEMRRQALDHFN 899
Query: 331 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV-- 388
+ S F FLLS RA G G+NL +ADTVII+D D NP+N+ QA ARAHRIGQK +V +
Sbjct: 900 AEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYR 959
Query: 389 -IYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADE 447
+ +V ++I K+ + + D G+ S G N+ K D++
Sbjct: 960 LVTARSVEEQIVERAKQKMVLDHLVIQ-RMDTTGRTVLDKSGNGHSSNSNPFNKDDLS-A 1017
Query: 448 VINAGR---FDQRTTHEERRMT-LETLLHDEERYQET----VHDVPSLQEVNRMIARSED 499
++ G F H++ + ++ +L E E D+ S +V + A E+
Sbjct: 1018 ILKFGAEELFKDEQEHDDDLVCDIDEILRRAETRNEDPEMPADDLLSAFKVASIAAFEEE 1077
Query: 500 EVELFDQMDEEFGWIEEMTR-YDQV-PKWLRAST--KEVNATIANLSKKPSKNILFGSNI 555
+ + D+ E+ ++ +D + P+ R + +E + +L P + N
Sbjct: 1078 PSDSVSKQDQNAAGEEDDSKDWDDIIPEGFRKAIDDQERAKEMEDLYLPPRRKTAANQNE 1137
Query: 556 GVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDE 595
G + +G KGK+ + D + S+ S D+
Sbjct: 1138 G------KRGAGKGGKGKQQADDSGGDSDYELGSDGSGDD 1171
Score = 210 (79.0 bits), Expect = 9.2e-56, Sum P(3) = 9.2e-56
Identities = 45/132 (34%), Positives = 70/132 (53%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA-------ALKFNVLVTTYEFIMYD 53
M+ WQ E W P ++ + Y+G D +SR Q+ LKFN ++TTYE ++ D
Sbjct: 589 MTAWQREFDLWAPDMNVVTYLG--DIKSRELIQQYEWQFESSKRLKFNCILTTYEIVLKD 646
Query: 54 RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXX 113
+ L + W +++DEA R+K+ +S+L + L + RLL+TGTPLQN
Sbjct: 647 KQFLGTLQWAALLVDEAHRLKNDDSLLYKSLKEFDTNHRLLITGTPLQNSLKELWALLHF 706
Query: 114 XXPEVFDNRKAF 125
P+ FD + F
Sbjct: 707 IMPDKFDTWENF 718
Score = 53 (23.7 bits), Expect = 1.6e-54, Sum P(5) = 1.6e-54
Identities = 20/72 (27%), Positives = 31/72 (43%)
Query: 768 PLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRN--LPSRKIA 825
PLHR ++ ++ K A+L+ EM H H+ E SK+ P K
Sbjct: 1207 PLHRMEAIACDAELQEKPLAELKRLGEM-LHDRCVQFLHEHKEEESKTAATDETPGAKQR 1265
Query: 826 NAPKSRASLKTG 837
A ++ S+K G
Sbjct: 1266 RA-RATFSVKLG 1276
Score = 47 (21.6 bits), Expect = 9.2e-56, Sum P(3) = 9.2e-56
Identities = 21/69 (30%), Positives = 23/69 (33%)
Query: 556 GVDSGEIETERKR-GPKGKKYPNYKEVDDEIGEYSEASSDERNGYPVQXXXXXXXXXXXX 614
GV + E E ER R G K KK KE + Y E Y
Sbjct: 1624 GVTTEEKEKERDRSGGKKKKKDKDKERSGQ-ARYPETGIPTSGRYADPPLKRKRDENDAD 1682
Query: 615 XYSGAVGAP 623
SG GAP
Sbjct: 1683 ASSGLAGAP 1691
Score = 43 (20.2 bits), Expect = 2.4e-55, Sum P(3) = 2.4e-55
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 556 GVDSGEIETERKRGPKGKKYPN 577
G G ER R P+ ++YP+
Sbjct: 1799 GGGQGSYHRERDRRPEKRRYPS 1820
Score = 41 (19.5 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 863 NASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVP 902
NA+G + S D+I + I +R E E + P
Sbjct: 1088 NAAGEEDDSKDWDDIIPEGFRKAIDDQERAKEMEDLYLPP 1127
Score = 39 (18.8 bits), Expect = 8.2e-54, Sum P(4) = 8.2e-54
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 806 HDQSEPSSKSRRNLPSRKIANAPKSRASLKTGR 838
+ Q +PS+ S N P+ + P +A R
Sbjct: 1441 NSQVDPSTASPHNAPATEQHGDPAKKAKKSKAR 1473
Score = 39 (18.8 bits), Expect = 8.2e-54, Sum P(4) = 8.2e-54
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 816 RRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAA 850
R+ P AN K+ + + ++ P EDAA
Sbjct: 1396 RQRRPRASRANDAKAASQSASSTIDAKPHDGEDAA 1430
Score = 38 (18.4 bits), Expect = 1.6e-54, Sum P(5) = 1.6e-54
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 858 DGKIANASGSSNFSAKMSD 876
D K A+ S SS AK D
Sbjct: 1407 DAKAASQSASSTIDAKPHD 1425
Score = 37 (18.1 bits), Expect = 1.6e-54, Sum P(5) = 1.6e-54
Identities = 6/9 (66%), Positives = 9/9 (100%)
Query: 1090 KKKRKDREK 1098
KKK+KD++K
Sbjct: 1640 KKKKKDKDK 1648
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 343 (125.8 bits), Expect = 1.2e-55, Sum P(2) = 1.2e-55
Identities = 87/230 (37%), Positives = 127/230 (55%)
Query: 263 VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDR 322
V GKL LD +L +L+ GHRVLL+ MT+++D++EEYL +R Y R+DG+T LEDR
Sbjct: 1317 VTDSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1376
Query: 323 ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ 382
+ DF D F+FLLS RA G G+NL +ADTVI YD D NP + QA+ RAHR+GQ
Sbjct: 1377 RDTVADFQQRP-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQ 1435
Query: 383 KREVKV---IYMEAVVDKISSH--QKEDELR---SGGTVDLED-DLAGKDRYIGSIEGLI 433
R+V V I + ++I QKE+ R SGG D + +D I +
Sbjct: 1436 TRQVTVYRLITRSTIEERIRKRALQKEEVQRVVISGGAAGGVDFNTRNRDSKTKDIAMWL 1495
Query: 434 RNNIQQYKIDMAD-------EVINAGRFDQRTTHEERR-MTLETLLHDEE 475
++ Q I+ + E A + ++ + +R +TL+ + H+ E
Sbjct: 1496 ADDEQAELIEQKEREALERGETFGASKGGKKNAQKRKRDVTLDDMYHEGE 1545
Score = 330 (121.2 bits), Expect = 1.2e-55, Sum P(2) = 1.2e-55
Identities = 85/251 (33%), Positives = 133/251 (52%)
Query: 4 WQSELHKWLPSVSCIYYVG-AKDQRS-RLF--SQEVAALK---FNVLVTTYEFIMYDRSK 56
WQ E+ K++P++ + Y G AKD++ R F + + K F+VLVT+Y+ ++ D
Sbjct: 862 WQQEITKFVPNIKVLPYWGNAKDRKILRKFWDRKHITYTKESEFHVLVTSYQLVVLDAQY 921
Query: 57 LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXP 116
KV W+Y+I+DEAQ +K +S + L + C+ RLLLTGTP+QN+ P
Sbjct: 922 FQKVKWQYMILDEAQAIKSSQSSRWKSLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMP 981
Query: 117 EVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVE 176
+FD+ F +WFS+ + +H + L ++ + RLH IL+PFMLRR + V+
Sbjct: 982 TLFDSHDEFSEWFSKDIE----SHAQSNTKLNEDQ----LRRLHMILKPFMLRRVKKHVQ 1033
Query: 177 GSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNR 236
L KV + C ++ Q A+Y ++ RV D ++K + TL N
Sbjct: 1034 QELGDKVEKDVFCDLTYRQRALYTNLRN----RVSIMD---LIEKAAVGDETDSTTLMNL 1086
Query: 237 CMELRKTCNHP 247
M+ RK CNHP
Sbjct: 1087 VMQFRKVCNHP 1097
>UNIPROTKB|O14647 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 EMBL:CH471101
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
EMBL:AF006514 EMBL:BT007050 EMBL:FJ515838 EMBL:AC013394
EMBL:BC007347 EMBL:CR978407 IPI:IPI00023109 IPI:IPI00815893
RefSeq:NP_001036037.1 RefSeq:NP_001262.3 UniGene:Hs.220864
ProteinModelPortal:O14647 SMR:O14647 IntAct:O14647 STRING:O14647
PhosphoSite:O14647 PaxDb:O14647 PRIDE:O14647 DNASU:1106
Ensembl:ENST00000394196 Ensembl:ENST00000420239
Ensembl:ENST00000557381 GeneID:1106 KEGG:hsa:1106 UCSC:uc002bso.1
UCSC:uc002bsp.3 CTD:1106 GeneCards:GC15P093533 HGNC:HGNC:1917
MIM:602119 neXtProt:NX_O14647 PharmGKB:PA26453 InParanoid:O14647
OMA:AHSWCKN OrthoDB:EOG4QRH36 ChiTaRS:CHD2 GenomeRNAi:1106
NextBio:4584 ArrayExpress:O14647 Bgee:O14647 CleanEx:HS_CHD2
Genevestigator:O14647 GermOnline:ENSG00000173575 Uniprot:O14647
Length = 1828
Score = 442 (160.7 bits), Expect = 1.4e-55, Sum P(3) = 1.4e-55
Identities = 130/387 (33%), Positives = 203/387 (52%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 218
LH++LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI +
Sbjct: 689 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNY---------KA 739
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKD------FLVKSCGKLWIL 272
+ K + N MEL+K CNH L P + ++ L++S GKL +L
Sbjct: 740 LAKGTRGSTSGFL---NIVMELKKCCNHCYLIKPPEENERENGQEILLSLIRSSGKLILL 796
Query: 273 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332
D++L +L+ G+RVL+FS M ++LDIL EYL + ++R+DG+ E R+ A+ FN+
Sbjct: 797 DKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNAD 856
Query: 333 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 390
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 857 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 916
Query: 391 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 450
+ V++ + + ++ V D G+ + + G R+N + + ++
Sbjct: 917 TKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT-ILENNSG--RSNSNPFNKEELTAILK 973
Query: 451 AGRFDQRTTHEERRMTLETLLHDEE-RYQETVHDVPSLQEVNRMIARSEDEVELFDQMDE 509
G D E + + DE R ET + S + ++ S+ +V F M++
Sbjct: 974 FGAEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELL--SQFKVANFATMED 1031
Query: 510 EFGWIEEMTR--YDQV-PKWLRASTKE 533
E +EE +D++ P+ R +E
Sbjct: 1032 EEE-LEERPHKDWDEIIPEEQRKKVEE 1057
Score = 219 (82.2 bits), Expect = 1.4e-55, Sum P(3) = 1.4e-55
Identities = 43/132 (32%), Positives = 72/132 (54%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRS 55
++ WQ E W P ++ + Y+G R+ + E LKFN L+TTYE ++ D++
Sbjct: 545 LTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDKT 604
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L ++W ++ +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 605 VLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIM 664
Query: 116 PEVFDNRKAFHD 127
PE F+ + F +
Sbjct: 665 PEKFEFWEDFEE 676
Score = 62 (26.9 bits), Expect = 1.4e-55, Sum P(3) = 1.4e-55
Identities = 35/162 (21%), Positives = 64/162 (39%)
Query: 670 RLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDR 729
+LT + PV K L+ R L K + LE+ + AV+G ++ R
Sbjct: 1291 KLTDKILPVETDKKPQGKQLQTRADYLLKLLRKGLEK-KGAVTGGEEAKLKKR----KPR 1345
Query: 730 DEGEDEQVLQPKIKRKRSIRVR-PRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQ 788
+ E++ P++K + I + PRH+ EE D L + + +NK +
Sbjct: 1346 VKKENKV---PRLKEEHGIELSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKENKENKE 1402
Query: 789 LRTDTEMKAHGESNSLRH-DQSE-PSSKSRRNLPSRKIANAP 828
+ + G+ + D+ E P S ++ K + P
Sbjct: 1403 KQMSSRKDKEGDKERKKSKDKKEKPKSGDAKSSSKSKRSQGP 1444
Score = 52 (23.4 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
Identities = 43/176 (24%), Positives = 69/176 (39%)
Query: 671 LTQIVSPVSPQKFGSLSALEARPGSLS----KRMPDELEEGEIAVSG-DSHMDHQQSGSW 725
LT I+ + F L E+ P + R+ E E E++ S D + + ++
Sbjct: 968 LTAILKFGAEDLFKELEGEESEPQEMDIDEILRLA-ETRENEVSTSATDELLSQFKVANF 1026
Query: 726 THDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKY 785
DE E E+ +P I R VE EER ++ +LP +
Sbjct: 1027 ATMEDEEELEE--RPHKDWDEIIPEEQRKKVEE-EERQKELEEIY-----MLPRIRSSTK 1078
Query: 786 PAQLR---TDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKS-RASLKTG 837
AQ +DTE K + +S ++E S ++ P R+ P+S R L G
Sbjct: 1079 KAQTNDSDSDTESKRQAQRSSASESETEDSDDDKK--PKRR--GRPRSVRKDLVEG 1130
Score = 39 (18.8 bits), Expect = 3.5e-53, Sum P(3) = 3.5e-53
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 567 KRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPV 601
K G K +K K+ + G+ +S +R+ PV
Sbjct: 1411 KEGDKERKKSKDKKEKPKSGDAKSSSKSKRSQGPV 1445
Score = 39 (18.8 bits), Expect = 3.5e-53, Sum P(3) = 3.5e-53
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 557 VDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYP 600
V GE +KR P+ KK + +E G E SS + P
Sbjct: 1331 VTGGEEAKLKKRKPRVKKENKVPRLKEEHG--IELSSPRHSDNP 1372
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 441 (160.3 bits), Expect = 2.8e-55, Sum P(2) = 2.8e-55
Identities = 103/236 (43%), Positives = 144/236 (61%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 218
LH++LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI +
Sbjct: 691 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNY---------KA 741
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKD------FLVKSCGKLWIL 272
+ K + N MEL+K CNH L P + ++ L++S GKL +L
Sbjct: 742 LAKGTRGSTSGFL---NIVMELKKCCNHCYLIKPPEENERENGQEILLSLIRSSGKLILL 798
Query: 273 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332
D++L +L+ G+RVL+FS M ++LDIL EYL + ++R+DG+ E R+ A+ FN+
Sbjct: 799 DKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNAD 858
Query: 333 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V +
Sbjct: 859 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNI 914
Score = 219 (82.2 bits), Expect = 2.8e-55, Sum P(2) = 2.8e-55
Identities = 43/132 (32%), Positives = 72/132 (54%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRS 55
++ WQ E W P ++ + Y+G R+ + E LKFN L+TTYE ++ D++
Sbjct: 547 LTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDKT 606
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L ++W ++ +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 607 VLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIM 666
Query: 116 PEVFDNRKAFHD 127
PE F+ + F +
Sbjct: 667 PEKFEFWEDFEE 678
>UNIPROTKB|J9PA90 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000045903 Uniprot:J9PA90
Length = 1840
Score = 442 (160.7 bits), Expect = 2.9e-55, Sum P(3) = 2.9e-55
Identities = 130/387 (33%), Positives = 203/387 (52%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 218
LH++LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI +
Sbjct: 702 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNY---------KA 752
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKD------FLVKSCGKLWIL 272
+ K + N MEL+K CNH L P + ++ L++S GKL +L
Sbjct: 753 LAKGTRGSTSGFL---NIVMELKKCCNHCYLIKPPEENERENGQEVLLSLIRSSGKLILL 809
Query: 273 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332
D++L +L+ G+RVL+FS M ++LDIL EYL + ++R+DG+ E R+ A+ FN+
Sbjct: 810 DKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNAD 869
Query: 333 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 390
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 870 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 929
Query: 391 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 450
+ V++ + + ++ V D G+ + + G R+N + + ++
Sbjct: 930 TKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT-VLENNSG--RSNSNPFNKEELTAILK 986
Query: 451 AGRFDQRTTHEERRMTLETLLHDEE-RYQETVHDVPSLQEVNRMIARSEDEVELFDQMDE 509
G D E + + DE R ET + S + ++ S+ +V F M++
Sbjct: 987 FGAEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELL--SQFKVANFATMED 1044
Query: 510 EFGWIEEMTR--YDQV-PKWLRASTKE 533
E +EE +D++ P+ R +E
Sbjct: 1045 EEE-LEERPHKDWDEIIPEEQRKKVEE 1070
Score = 219 (82.2 bits), Expect = 2.9e-55, Sum P(3) = 2.9e-55
Identities = 43/132 (32%), Positives = 72/132 (54%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRS 55
++ WQ E W P ++ + Y+G R+ + E LKFN L+TTYE ++ D++
Sbjct: 558 LTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDKT 617
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L ++W ++ +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 618 VLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFIM 677
Query: 116 PEVFDNRKAFHD 127
PE F+ + F +
Sbjct: 678 PEKFEFWEDFEE 689
Score = 59 (25.8 bits), Expect = 2.9e-55, Sum P(3) = 2.9e-55
Identities = 33/162 (20%), Positives = 63/162 (38%)
Query: 670 RLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDR 729
+LT + PV K L+ R L K + LE+ + AV+G ++ R
Sbjct: 1304 KLTDKILPVETDKKPQGKQLQTRADYLLKLLRKSLEK-KGAVTGGEEAKLKKR----KPR 1358
Query: 730 DEGEDEQVLQPKIKRKRSIRVR-PRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQ 788
+ E+++ P++K + + PRH+ EE D L + + +NK +
Sbjct: 1359 VKKENKE---PRLKDEHGVEFSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKENKENKE 1415
Query: 789 LRTDTEMKAHGESNSLRH-DQSE-PSSKSRRNLPSRKIANAP 828
+ + G+ + D+ E P ++ K + P
Sbjct: 1416 KQMSSRKDKEGDKERKKSKDKKEKPKGGDAKSSSKSKRSQGP 1457
Score = 44 (20.5 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 42/195 (21%), Positives = 75/195 (38%)
Query: 671 LTQIVSPVSPQKFGSLSALEARPGSLS----KRMPDELEEGEIAVSG-DSHMDHQQSGSW 725
LT I+ + F L E+ P + R+ E E E++ S D + + ++
Sbjct: 981 LTAILKFGAEDLFKELEGEESEPQEMDIDEILRLA-ETRENEVSTSATDELLSQFKVANF 1039
Query: 726 THDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKY 785
DE E E+ +P I R VE EER ++ +LP +
Sbjct: 1040 ATMEDEEELEE--RPHKDWDEIIPEEQRKKVEE-EERQKELEEIY-----MLPRIRSSTK 1091
Query: 786 PAQLR---TDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCM 842
AQ +DTE K + +S +++ S ++ PK R ++ R + +
Sbjct: 1092 KAQTNDSDSDTESKRQAQRSSASESETDDSDDDKK----------PKRRGRPRSVRKDLV 1141
Query: 843 PGHTEDAADHFKESW 857
G T+ F +++
Sbjct: 1142 EGFTDAEIRRFIKAY 1156
Score = 42 (19.8 bits), Expect = 1.7e-53, Sum P(3) = 1.7e-53
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 557 VDSGEIETERKRGPKGKKYPNYKEVDDEIG-EYS 589
V GE +KR P+ KK + DE G E+S
Sbjct: 1344 VTGGEEAKLKKRKPRVKKENKEPRLKDEHGVEFS 1377
Score = 37 (18.1 bits), Expect = 5.8e-53, Sum P(3) = 5.8e-53
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 567 KRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPV 601
K G K +K K+ + G+ +S +R+ PV
Sbjct: 1424 KEGDKERKKSKDKKEKPKGGDAKSSSKSKRSQGPV 1458
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 446 (162.1 bits), Expect = 4.4e-55, Sum P(4) = 4.4e-55
Identities = 108/238 (45%), Positives = 143/238 (60%)
Query: 156 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 215
I LH+ LEPF+LRR +DVE SLPPK +LR M+A Q Y WI T R E
Sbjct: 607 ISALHKKLEPFLLRRVKKDVEKSLPPKTEQILRVDMTAHQKQFYKWI-LTKNYR-----E 660
Query: 216 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPY---FSDLSKDF--LVKSCGKLW 270
+ K I N MEL+K CNH L Y + D L+KS GKL
Sbjct: 661 LSKGVKGSI------NGFVNLVMELKKCCNHASLTRQYDHIYDDAQGRLQQLLKSSGKLI 714
Query: 271 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 330
+LD++L +L+ GHRVL+FS M +LDIL+EYLQ R+ +R+DG+ + R+ A+ +N
Sbjct: 715 LLDKLLCRLKDKGHRVLIFSQMVMMLDILQEYLQLRRFPSQRLDGSMRADLRKQALDHYN 774
Query: 331 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
+ S F FLLS RA G G+NL +ADTVII+D D NP+N+ QA++RAHRIGQ + V +
Sbjct: 775 APGSTDFAFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQTKTVNI 832
Score = 228 (85.3 bits), Expect = 4.4e-55, Sum P(4) = 4.4e-55
Identities = 44/125 (35%), Positives = 70/125 (56%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRS 55
M+ WQ E +W P ++ + Y+G R + E +K N ++TTYE ++ D++
Sbjct: 466 MAAWQKEFAQWAPEMNLVVYMGDVVSRDMIRQYEWFVGGTKKMKINAILTTYEILLKDKA 525
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
LS +DW +++DEA R+K+ ES+L + L ++R +LL+TGTPLQN
Sbjct: 526 FLSSIDWAALLVDEAHRLKNDESLLYKSLTQFRFNHKLLITGTPLQNSLKELWALLHFIM 585
Query: 116 PEVFD 120
PE FD
Sbjct: 586 PEKFD 590
Score = 45 (20.9 bits), Expect = 4.4e-55, Sum P(4) = 4.4e-55
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 690 EARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGED 734
E +P + E+ G+ MDH + S H R+ +D
Sbjct: 1399 EEKPKEAKDHKERDREKDRERNRGERRMDHGEGTSKDHHREHHKD 1443
Score = 45 (20.9 bits), Expect = 4.4e-55, Sum P(4) = 4.4e-55
Identities = 14/61 (22%), Positives = 29/61 (47%)
Query: 699 RMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSI-RVRPRHTVE 757
R P E+ + +++ D H +H H + ++E+ + K ++R + R R+ E
Sbjct: 1369 REPGEMADRYRSITSDKHKNHHH-----HHHHKSKEEKPKEAKDHKERDREKDRERNRGE 1423
Query: 758 R 758
R
Sbjct: 1424 R 1424
Score = 41 (19.5 bits), Expect = 4.4e-55, Sum P(4) = 4.4e-55
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 565 ERKRGPKGKKYPNYKEVDDEIGEYSEASSD 594
E P+ +K P + V+D+ G+ E D
Sbjct: 983 EMNLAPRQRKQPIPQVVEDDDGDDDEEEDD 1012
Score = 40 (19.1 bits), Expect = 5.0e-13, Sum P(2) = 5.0e-13
Identities = 15/64 (23%), Positives = 34/64 (53%)
Query: 889 LQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNIL--DLRKIDQRVDRLEYNGVMELV 946
L RR++K+ + +P T+ R++ + + IL + R++ + V + NG + LV
Sbjct: 618 LLRRVKKDVEKSLPPKTEQILRVDMTAHQKQFYKWILTKNYRELSKGV-KGSINGFVNLV 676
Query: 947 SDVQ 950
+++
Sbjct: 677 MELK 680
Score = 38 (18.4 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 898 HQIVPLLTDLWKRIETS 914
H I+P D W+ ET+
Sbjct: 582 HFIMPEKFDCWEEFETA 598
Score = 37 (18.1 bits), Expect = 6.6e-12, Sum P(4) = 6.6e-12
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 343 IRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHR 379
++A R + TV IY EE+ V RA R
Sbjct: 815 LQAMSRAHRIGQTKTVNIYRLVTKGSVEEEIVERAKR 851
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 342 (125.4 bits), Expect = 5.3e-55, Sum P(3) = 5.3e-55
Identities = 79/256 (30%), Positives = 135/256 (52%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRS---RLFSQEVAALK---FNVLVTTYEFIMYDR 54
++ W E +++P + Y G R + +SQ+ + F+V++T+Y+ ++ D
Sbjct: 584 LNNWHQEFARFVPKFKVLPYWGNPHDRKVIRKFWSQKTLYTQDAPFHVVITSYQLVVQDV 643
Query: 55 SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXX 114
+V W+Y+++DEAQ +K SV + L +++C+ RLLLTGTP+QN
Sbjct: 644 KYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFI 703
Query: 115 XPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVED 174
P +FD+ + F++WFS+ + +A D E + + RLH IL+PFMLRR +D
Sbjct: 704 MPTLFDSHEEFNEWFSKDIESHAENKSAID---ENQ-----LSRLHMILKPFMLRRIKKD 755
Query: 175 VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVY-KTL 233
VE L K+ I++ C+ ++ Q +Y +K ++ D+ + QA+ +L
Sbjct: 756 VENELSDKIEILMYCQQTSRQKLLYQALKNKISI-----DDLLQSSMGTTQQAQTTTSSL 810
Query: 234 NNRCMELRKTCNHPLL 249
N M+ RK CNHP L
Sbjct: 811 MNLVMQFRKVCNHPEL 826
Score = 336 (123.3 bits), Expect = 5.3e-55, Sum P(3) = 5.3e-55
Identities = 73/173 (42%), Positives = 110/173 (63%)
Query: 259 KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 318
K+ L+ GKL LD +L +L+ GHRVL++S MT+++D+LEEY+ +R+ Y R+DG++
Sbjct: 1101 KESLITDSGKLHALDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSK 1160
Query: 319 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 378
+ +R + DF + + D F+FLLS RA G G+NL +ADTVI YD D NP ++QA+ RAH
Sbjct: 1161 ISERRDMVADFQNRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAH 1219
Query: 379 RIGQKREVKV---IYMEAVVDKISSHQKE-DELR----SGGTVDLEDDLAGKD 423
R+GQ ++V V I + ++I KE E++ SGG D L K+
Sbjct: 1220 RLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFK-PDTLKPKE 1271
Score = 41 (19.5 bits), Expect = 5.3e-55, Sum P(3) = 5.3e-55
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 565 ERKRGPKGKKYPNYKEVDDEI 585
ERKR K +KY K+ +DE+
Sbjct: 1304 ERKR--KREKYAEKKKKEDEL 1322
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 442 (160.7 bits), Expect = 8.8e-55, Sum P(3) = 8.8e-55
Identities = 130/387 (33%), Positives = 203/387 (52%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 218
LH++LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI +
Sbjct: 678 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNY---------KA 728
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKD------FLVKSCGKLWIL 272
+ K + N MEL+K CNH L P + ++ L++S GKL +L
Sbjct: 729 LAKGTRGSTSGFL---NIVMELKKCCNHCYLIKPPEENERENGQEILLSLIRSSGKLILL 785
Query: 273 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332
D++L +L+ G+RVL+FS M ++LDIL EYL + ++R+DG+ E R+ A+ FN+
Sbjct: 786 DKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNAD 845
Query: 333 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 390
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 846 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 905
Query: 391 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 450
+ V++ + + ++ V D G+ + + G R+N + + ++
Sbjct: 906 TKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT-VLENNSG--RSNSNPFNKEELTAILK 962
Query: 451 AGRFDQRTTHEERRMTLETLLHDEE-RYQETVHDVPSLQEVNRMIARSEDEVELFDQMDE 509
G D E + + DE R ET + S + ++ S+ +V F M++
Sbjct: 963 FGAEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELL--SQFKVANFATMED 1020
Query: 510 EFGWIEEMTR--YDQV-PKWLRASTKE 533
E +EE +D++ P+ R +E
Sbjct: 1021 EEE-LEERPHKDWDEIIPEEQRKKVEE 1046
Score = 219 (82.2 bits), Expect = 8.8e-55, Sum P(3) = 8.8e-55
Identities = 43/132 (32%), Positives = 72/132 (54%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRS 55
++ WQ E W P ++ + Y+G R+ + E LKFN L+TTYE ++ D++
Sbjct: 534 LTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDKT 593
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L ++W ++ +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 594 VLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIM 653
Query: 116 PEVFDNRKAFHD 127
PE F+ + F +
Sbjct: 654 PEKFEFWEDFEE 665
Score = 53 (23.7 bits), Expect = 8.8e-55, Sum P(3) = 8.8e-55
Identities = 36/177 (20%), Positives = 67/177 (37%)
Query: 675 VSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGED 734
+ PV K L+ R L K + LE+ E AV+G ++ R + E+
Sbjct: 1286 ILPVETDKKPQGKQLQTRADYLLKLLRKSLEK-EGAVTGGEEAKLKKR----KPRVKKEN 1340
Query: 735 EQVLQPKIKRKRSIRVR-PRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDT 793
+ P++K + I PRH+ EE D L + + +NK + + +
Sbjct: 1341 KA---PRLKDEHGIEFSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKENKENKEKQMSS 1397
Query: 794 EMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLK-TGRLNCMP-GHTED 848
G+ R + K + ++ + + +S+ + T +P G ED
Sbjct: 1398 RKDKEGDKE--RKKSKDKKEKKPKGGDAKSSSKSKRSQGPVHITAGSEPVPIGEDED 1452
Score = 51 (23.0 bits), Expect = 1.4e-54, Sum P(3) = 1.4e-54
Identities = 31/135 (22%), Positives = 51/135 (37%)
Query: 765 TDTPLHRGDSSLLPFQMDNKYPA-QLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRK 823
TD L D +LP + D K QL+T + SL + + + + L RK
Sbjct: 1275 TDPELKLTDKKILPVETDKKPQGKQLQTRADYLLKLLRKSLEKEGAVTGGEEAK-LKKRK 1333
Query: 824 IANAPKSRASLKTGRLNCMPGHTEDAADHFKE-SWDGKIANASGSSNFSAKMSDVIQRRC 882
P+ + K RL G + H S +G++ + G K +
Sbjct: 1334 ----PRVKKENKAPRLKDEHGIEFSSPRHSDNPSEEGEVKD-DGLEKSPMKKKQKKKENK 1388
Query: 883 KNVISKLQRRIEKEG 897
+N ++ R +KEG
Sbjct: 1389 ENKEKQMSSRKDKEG 1403
Score = 44 (20.5 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 42/195 (21%), Positives = 75/195 (38%)
Query: 671 LTQIVSPVSPQKFGSLSALEARPGSLS----KRMPDELEEGEIAVSG-DSHMDHQQSGSW 725
LT I+ + F L E+ P + R+ E E E++ S D + + ++
Sbjct: 957 LTAILKFGAEDLFKELEGEESEPQEMDIDEILRLA-ETRENEVSTSATDELLSQFKVANF 1015
Query: 726 THDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKY 785
DE E E+ +P I R VE EER ++ +LP +
Sbjct: 1016 ATMEDEEELEE--RPHKDWDEIIPEEQRKKVEE-EERQKELEEIY-----MLPRIRSSTK 1067
Query: 786 PAQLR---TDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCM 842
AQ +DTE K + +S +++ S ++ PK R ++ R + +
Sbjct: 1068 KAQTNDSDSDTESKRQAQRSSASESETDESDDDKK----------PKRRGRPRSVRKDLV 1117
Query: 843 PGHTEDAADHFKESW 857
G T+ F +++
Sbjct: 1118 EGFTDAEIRRFIKAY 1132
Score = 42 (19.8 bits), Expect = 1.2e-53, Sum P(3) = 1.2e-53
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 557 VDSGEIETERKRGPKGKKYPNYKEVDDEIG-EYS 589
V GE +KR P+ KK + DE G E+S
Sbjct: 1321 VTGGEEAKLKKRKPRVKKENKAPRLKDEHGIEFS 1354
Score = 38 (18.4 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 454 FDQRTTHEERRMTLETLLHDEERYQETVHD 483
FD R H+ +M + +EE+ Q+ D
Sbjct: 1534 FDARKLHKLYKMAHKKRSQEEEKEQKKKDD 1563
>UNIPROTKB|G3MXX3 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:DAAA02051958 Ensembl:ENSBTAT00000065179
Uniprot:G3MXX3
Length = 1810
Score = 443 (161.0 bits), Expect = 8.9e-55, Sum P(3) = 8.9e-55
Identities = 143/459 (31%), Positives = 229/459 (49%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 218
LH++LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI +
Sbjct: 671 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNY---------KA 721
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNH-PLLNYPYFSDLSKD-----FLVKSCGKLWIL 272
+ K + N MEL+K CNH L+ P ++ L++S GKL +L
Sbjct: 722 LAKGTRGSTSGFL---NIVMELKKCCNHCHLIKPPEENERENGQEVLLSLIRSSGKLILL 778
Query: 273 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332
D++L +L+ G+RVL+FS M ++LDIL EYL + ++R+DG+ E R+ A+ FN+
Sbjct: 779 DKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNAD 838
Query: 333 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 390
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 839 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 898
Query: 391 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 450
+ V++ + + ++ V D G+ + + G R+N + + ++
Sbjct: 899 TKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT-VLENNSG--RSNSNPFNKEELTAILK 955
Query: 451 AGRFD-----QRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRM----IARSEDEV 501
G D + E + M ++ +L E + V + + +++ A EDE
Sbjct: 956 FGAEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVANFATMEDEE 1015
Query: 502 ELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGE 561
EL ++ ++ W +E+ +Q K ++ I L + S +N DS +
Sbjct: 1016 ELDERPHKD--W-DEIIPEEQRKKVEEEERQKELEEIYMLPRIRSSTKKAQTN---DS-D 1068
Query: 562 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYP 600
+TE KR + + + E DD + +R G P
Sbjct: 1069 SDTESKRQAQ-RSSASESETDDS----DDDKKPKRRGRP 1102
Score = 219 (82.2 bits), Expect = 8.9e-55, Sum P(3) = 8.9e-55
Identities = 43/132 (32%), Positives = 72/132 (54%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRS 55
++ WQ E W P ++ + Y+G R+ + E LKFN L+TTYE ++ D++
Sbjct: 527 LTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDKT 586
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L ++W ++ +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 587 VLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIM 646
Query: 116 PEVFDNRKAFHD 127
PE F+ + F +
Sbjct: 647 PEKFEFWEDFEE 658
Score = 53 (23.7 bits), Expect = 8.9e-55, Sum P(3) = 8.9e-55
Identities = 30/136 (22%), Positives = 55/136 (40%)
Query: 765 TDTPLHRGDSSLLPFQMDNKYPA-QLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRK 823
TD L D +LP + D K QL+T + SL + + + + L RK
Sbjct: 1268 TDPELKLTDKKILPVETDKKPQGKQLQTRADYLLKLLRKSLEKEGAVTGGEEAK-LTKRK 1326
Query: 824 IANAPKSRASLKT--GRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRR 881
+++A LK G P H+++ ++ +G++ + G K +
Sbjct: 1327 PRVKKENKAPLKDEHGIEFSSPRHSDNPSE------EGEVKD-DGLEKSPTKKKQKKKEN 1379
Query: 882 CKNVISKLQRRIEKEG 897
+N ++ R +KEG
Sbjct: 1380 KENKEKQMSSRKDKEG 1395
Score = 50 (22.7 bits), Expect = 1.8e-54, Sum P(3) = 1.8e-54
Identities = 33/157 (21%), Positives = 57/157 (36%)
Query: 675 VSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGED 734
+ PV K L+ R L K + LE+ E AV+G + T + +
Sbjct: 1279 ILPVETDKKPQGKQLQTRADYLLKLLRKSLEK-EGAVTGG------EEAKLTKRKPRVKK 1331
Query: 735 EQVLQPKIKRKRSIRVR-PRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDT 793
E + +K + I PRH+ EE D L + + + +NK + + +
Sbjct: 1332 EN--KAPLKDEHGIEFSSPRHSDNPSEEGEVKDDGLEKSPTKKKQKKKENKENKEKQMSS 1389
Query: 794 EMKAHGESNSLRH-DQSE-PSSKSRRNLPSRKIANAP 828
G+ R D+ E P ++ K + P
Sbjct: 1390 RKDKEGDKERKRSKDKKEKPKGGDAKSSSKSKRSQGP 1426
Score = 41 (19.5 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 41/195 (21%), Positives = 75/195 (38%)
Query: 671 LTQIVSPVSPQKFGSLSALEARPGSLS----KRMPDELEEGEIAVSG-DSHMDHQQSGSW 725
LT I+ + F L E+ P + R+ E E E++ S D + + ++
Sbjct: 950 LTAILKFGAEDLFKELEGEESEPQEMDIDEILRLA-ETRENEVSTSATDELLSQFKVANF 1008
Query: 726 THDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKY 785
DE E ++ +P I R VE EER ++ +LP +
Sbjct: 1009 ATMEDEEELDE--RPHKDWDEIIPEEQRKKVEE-EERQKELEEIY-----MLPRIRSSTK 1060
Query: 786 PAQLR---TDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCM 842
AQ +DTE K + +S +++ S ++ PK R ++ R + +
Sbjct: 1061 KAQTNDSDSDTESKRQAQRSSASESETDDSDDDKK----------PKRRGRPRSVRKDLV 1110
Query: 843 PGHTEDAADHFKESW 857
G T+ F +++
Sbjct: 1111 EGFTDAEIRRFIKAY 1125
Score = 37 (18.1 bits), Expect = 4.2e-53, Sum P(3) = 4.2e-53
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 567 KRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPV 601
K G K +K K+ + G+ +S +R+ PV
Sbjct: 1393 KEGDKERKRSKDKKEKPKGGDAKSSSKSKRSQGPV 1427
>UNIPROTKB|F1SA77 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000002524
Uniprot:F1SA77
Length = 1831
Score = 442 (160.7 bits), Expect = 1.2e-54, Sum P(3) = 1.2e-54
Identities = 130/387 (33%), Positives = 203/387 (52%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 218
LH++LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI +
Sbjct: 691 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNY---------KA 741
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKD------FLVKSCGKLWIL 272
+ K + N MEL+K CNH L P + ++ L++S GKL +L
Sbjct: 742 LAKGTRGSTSGFL---NIVMELKKCCNHCYLIKPPEENERENGQEILLSLIRSSGKLILL 798
Query: 273 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332
D++L +L+ G+RVL+FS M ++LDIL EYL + ++R+DG+ E R+ A+ FN+
Sbjct: 799 DKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNAD 858
Query: 333 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 390
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 859 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 918
Query: 391 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 450
+ V++ + + ++ V D G+ + + G R+N + + ++
Sbjct: 919 TKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT-VLENNSG--RSNSNPFNKEELTAILK 975
Query: 451 AGRFDQRTTHEERRMTLETLLHDEE-RYQETVHDVPSLQEVNRMIARSEDEVELFDQMDE 509
G D E + + DE R ET + S + ++ S+ +V F M++
Sbjct: 976 FGAEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELL--SQFKVANFATMED 1033
Query: 510 EFGWIEEMTR--YDQV-PKWLRASTKE 533
E +EE +D++ P+ R +E
Sbjct: 1034 EEE-LEERPHKDWDEIIPEEQRKKVEE 1059
Score = 219 (82.2 bits), Expect = 1.2e-54, Sum P(3) = 1.2e-54
Identities = 43/132 (32%), Positives = 72/132 (54%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRS 55
++ WQ E W P ++ + Y+G R+ + E LKFN L+TTYE ++ D++
Sbjct: 547 LTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDKT 606
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L ++W ++ +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 607 VLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIM 666
Query: 116 PEVFDNRKAFHD 127
PE F+ + F +
Sbjct: 667 PEKFEFWEDFEE 678
Score = 53 (23.7 bits), Expect = 1.2e-54, Sum P(3) = 1.2e-54
Identities = 33/157 (21%), Positives = 59/157 (37%)
Query: 675 VSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGED 734
+ PV K L+ R L K + LE+ E AV+G ++ R + E+
Sbjct: 1299 ILPVETDKKPQGKQLQTRADYLLKLLRKSLEK-EGAVTGGEEAKLKKR----KPRVKKEN 1353
Query: 735 EQVLQPKIKRKRSIRVR-PRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDT 793
+ P++K + I PRH+ EE D L + + +NK + + +
Sbjct: 1354 KA---PRLKDEHGIEFSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKENKENKEKQMSS 1410
Query: 794 EMKAHGESNSLRH-DQSE-PSSKSRRNLPSRKIANAP 828
G+ + D+ E P ++ K + P
Sbjct: 1411 RKDKEGDKERKKSKDKKEKPKGGDAKSSSKSKRSQGP 1447
Score = 51 (23.0 bits), Expect = 1.9e-54, Sum P(3) = 1.9e-54
Identities = 31/135 (22%), Positives = 51/135 (37%)
Query: 765 TDTPLHRGDSSLLPFQMDNKYPA-QLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRK 823
TD L D +LP + D K QL+T + SL + + + + L RK
Sbjct: 1288 TDPELKLTDKKILPVETDKKPQGKQLQTRADYLLKLLRKSLEKEGAVTGGEEAK-LKKRK 1346
Query: 824 IANAPKSRASLKTGRLNCMPGHTEDAADHFKE-SWDGKIANASGSSNFSAKMSDVIQRRC 882
P+ + K RL G + H S +G++ + G K +
Sbjct: 1347 ----PRVKKENKAPRLKDEHGIEFSSPRHSDNPSEEGEVKD-DGLEKSPMKKKQKKKENK 1401
Query: 883 KNVISKLQRRIEKEG 897
+N ++ R +KEG
Sbjct: 1402 ENKEKQMSSRKDKEG 1416
Score = 44 (20.5 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 42/195 (21%), Positives = 75/195 (38%)
Query: 671 LTQIVSPVSPQKFGSLSALEARPGSLS----KRMPDELEEGEIAVSG-DSHMDHQQSGSW 725
LT I+ + F L E+ P + R+ E E E++ S D + + ++
Sbjct: 970 LTAILKFGAEDLFKELEGEESEPQEMDIDEILRLA-ETRENEVSTSATDELLSQFKVANF 1028
Query: 726 THDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKY 785
DE E E+ +P I R VE EER ++ +LP +
Sbjct: 1029 ATMEDEEELEE--RPHKDWDEIIPEEQRKKVEE-EERQKELEEIY-----MLPRIRSSTK 1080
Query: 786 PAQLR---TDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCM 842
AQ +DTE K + +S +++ S ++ PK R ++ R + +
Sbjct: 1081 KAQTNDSDSDTESKRQAQRSSASESETDESDDDKK----------PKRRGRPRSVRKDLV 1130
Query: 843 PGHTEDAADHFKESW 857
G T+ F +++
Sbjct: 1131 EGFTDAEIRRFIKAY 1145
Score = 42 (19.8 bits), Expect = 1.7e-53, Sum P(3) = 1.7e-53
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 557 VDSGEIETERKRGPKGKKYPNYKEVDDEIG-EYS 589
V GE +KR P+ KK + DE G E+S
Sbjct: 1334 VTGGEEAKLKKRKPRVKKENKAPRLKDEHGIEFS 1367
Score = 37 (18.1 bits), Expect = 5.6e-53, Sum P(3) = 5.6e-53
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 567 KRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPV 601
K G K +K K+ + G+ +S +R+ PV
Sbjct: 1414 KEGDKERKKSKDKKEKPKGGDAKSSSKSKRSQGPV 1448
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 442 (160.7 bits), Expect = 1.4e-54, Sum P(3) = 1.4e-54
Identities = 130/387 (33%), Positives = 203/387 (52%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 218
LH++LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI +
Sbjct: 658 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNY---------KA 708
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKD------FLVKSCGKLWIL 272
+ K + N MEL+K CNH L P + ++ L++S GKL +L
Sbjct: 709 LAKGTRGSTSGFL---NIVMELKKCCNHCYLIKPPEENERENGQEVLLSLIRSSGKLILL 765
Query: 273 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332
D++L +L+ G+RVL+FS M ++LDIL EYL + ++R+DG+ E R+ A+ FN+
Sbjct: 766 DKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNAD 825
Query: 333 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 390
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 826 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 885
Query: 391 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 450
+ V++ + + ++ V D G+ + + G R+N + + ++
Sbjct: 886 TKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT-VLENNSG--RSNSNPFNKEELTAILK 942
Query: 451 AGRFDQRTTHEERRMTLETLLHDEE-RYQETVHDVPSLQEVNRMIARSEDEVELFDQMDE 509
G D E + + DE R ET + S + ++ S+ +V F M++
Sbjct: 943 FGAEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELL--SQFKVANFATMED 1000
Query: 510 EFGWIEEMTR--YDQV-PKWLRASTKE 533
E +EE +D++ P+ R +E
Sbjct: 1001 EEE-LEERPHKDWDEIIPEEQRKKVEE 1026
Score = 219 (82.2 bits), Expect = 1.4e-54, Sum P(3) = 1.4e-54
Identities = 43/132 (32%), Positives = 72/132 (54%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRS 55
++ WQ E W P ++ + Y+G R+ + E LKFN L+TTYE ++ D++
Sbjct: 514 LTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDKT 573
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L ++W ++ +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 574 VLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFIM 633
Query: 116 PEVFDNRKAFHD 127
PE F+ + F +
Sbjct: 634 PEKFEFWEDFEE 645
Score = 51 (23.0 bits), Expect = 1.4e-54, Sum P(3) = 1.4e-54
Identities = 34/177 (19%), Positives = 68/177 (38%)
Query: 675 VSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGED 734
+ PV K L+ R L K + LE+ + AV+G ++ R + E+
Sbjct: 1266 ILPVETDKKPQGKQLQTRADYLLKLLRKSLEK-KGAVTGGEEAKLKKR----KPRVKKEN 1320
Query: 735 EQVLQPKIKRKRSIRVR-PRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDT 793
++ P++K + + PRH+ EE D L + + +NK + + +
Sbjct: 1321 KE---PRLKDEHGVEFSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKENKENKEKQMSS 1377
Query: 794 EMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLK-TGRLNCMP-GHTED 848
G+ R + K + ++ + + +S+ + T +P G ED
Sbjct: 1378 RKDKEGDKE--RKKSKDKKEKKPKGGDAKSSSKSKRSQGPVHITAGSEPVPIGEDED 1432
Score = 47 (21.6 bits), Expect = 3.5e-54, Sum P(3) = 3.5e-54
Identities = 31/135 (22%), Positives = 50/135 (37%)
Query: 765 TDTPLHRGDSSLLPFQMDNKYPA-QLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRK 823
TD L D +LP + D K QL+T + SL + + + L RK
Sbjct: 1255 TDPELKLTDKKILPVETDKKPQGKQLQTRADYLLKLLRKSLEKKGAVTGGEEAK-LKKRK 1313
Query: 824 IANAPKSRASLKTGRLNCMPGHTEDAADHFKE-SWDGKIANASGSSNFSAKMSDVIQRRC 882
P+ + K RL G + H S +G++ + G K +
Sbjct: 1314 ----PRVKKENKEPRLKDEHGVEFSSPRHSDNPSEEGEVKD-DGLEKSPMKKKQKKKENK 1368
Query: 883 KNVISKLQRRIEKEG 897
+N ++ R +KEG
Sbjct: 1369 ENKEKQMSSRKDKEG 1383
Score = 44 (20.5 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 42/195 (21%), Positives = 75/195 (38%)
Query: 671 LTQIVSPVSPQKFGSLSALEARPGSLS----KRMPDELEEGEIAVSG-DSHMDHQQSGSW 725
LT I+ + F L E+ P + R+ E E E++ S D + + ++
Sbjct: 937 LTAILKFGAEDLFKELEGEESEPQEMDIDEILRLA-ETRENEVSTSATDELLSQFKVANF 995
Query: 726 THDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKY 785
DE E E+ +P I R VE EER ++ +LP +
Sbjct: 996 ATMEDEEELEE--RPHKDWDEIIPEEQRKKVEE-EERQKELEEIY-----MLPRIRSSTK 1047
Query: 786 PAQLR---TDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCM 842
AQ +DTE K + +S +++ S ++ PK R ++ R + +
Sbjct: 1048 KAQTNDSDSDTESKRQAQRSSASESETDDSDDDKK----------PKRRGRPRSVRKDLV 1097
Query: 843 PGHTEDAADHFKESW 857
G T+ F +++
Sbjct: 1098 EGFTDAEIRRFIKAY 1112
Score = 42 (19.8 bits), Expect = 1.2e-53, Sum P(3) = 1.2e-53
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 557 VDSGEIETERKRGPKGKKYPNYKEVDDEIG-EYS 589
V GE +KR P+ KK + DE G E+S
Sbjct: 1301 VTGGEEAKLKKRKPRVKKENKEPRLKDEHGVEFS 1334
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 442 (160.7 bits), Expect = 1.7e-54, Sum P(3) = 1.7e-54
Identities = 130/387 (33%), Positives = 203/387 (52%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 218
LH++LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI +
Sbjct: 689 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNY---------KA 739
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKD------FLVKSCGKLWIL 272
+ K + N MEL+K CNH L P + ++ L++S GKL +L
Sbjct: 740 LAKGTRGSTSGFL---NIVMELKKCCNHCYLIKPPEENERENGQEVLLSLIRSSGKLILL 796
Query: 273 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332
D++L +L+ G+RVL+FS M ++LDIL EYL + ++R+DG+ E R+ A+ FN+
Sbjct: 797 DKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNAD 856
Query: 333 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 390
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 857 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 916
Query: 391 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 450
+ V++ + + ++ V D G+ + + G R+N + + ++
Sbjct: 917 TKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT-VLENNSG--RSNSNPFNKEELTAILK 973
Query: 451 AGRFDQRTTHEERRMTLETLLHDEE-RYQETVHDVPSLQEVNRMIARSEDEVELFDQMDE 509
G D E + + DE R ET + S + ++ S+ +V F M++
Sbjct: 974 FGAEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELL--SQFKVANFATMED 1031
Query: 510 EFGWIEEMTR--YDQV-PKWLRASTKE 533
E +EE +D++ P+ R +E
Sbjct: 1032 EEE-LEERPHKDWDEIIPEEQRKKVEE 1057
Score = 219 (82.2 bits), Expect = 1.7e-54, Sum P(3) = 1.7e-54
Identities = 43/132 (32%), Positives = 72/132 (54%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRS 55
++ WQ E W P ++ + Y+G R+ + E LKFN L+TTYE ++ D++
Sbjct: 545 LTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDKT 604
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L ++W ++ +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 605 VLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFIM 664
Query: 116 PEVFDNRKAFHD 127
PE F+ + F +
Sbjct: 665 PEKFEFWEDFEE 676
Score = 46 (21.3 bits), Expect = 1.7e-54, Sum P(3) = 1.7e-54
Identities = 23/93 (24%), Positives = 42/93 (45%)
Query: 670 RLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDR 729
+LT + PV K L+ R L K + LE+ + AV+G ++ R
Sbjct: 1291 KLTDKILPVETDKKPQGKQLQTRADYLLKLLRKSLEK-KGAVTGGEEAKLKKR----KPR 1345
Query: 730 DEGEDEQVLQPKIKRKRSIRVR-PRHTVERPEE 761
+ E+++ P++K + + PRH+ + P E
Sbjct: 1346 VKKENKE---PRLKDEHGVEFSSPRHS-DNPSE 1374
Score = 44 (20.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 42/195 (21%), Positives = 75/195 (38%)
Query: 671 LTQIVSPVSPQKFGSLSALEARPGSLS----KRMPDELEEGEIAVSG-DSHMDHQQSGSW 725
LT I+ + F L E+ P + R+ E E E++ S D + + ++
Sbjct: 968 LTAILKFGAEDLFKELEGEESEPQEMDIDEILRLA-ETRENEVSTSATDELLSQFKVANF 1026
Query: 726 THDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKY 785
DE E E+ +P I R VE EER ++ +LP +
Sbjct: 1027 ATMEDEEELEE--RPHKDWDEIIPEEQRKKVEE-EERQKELEEIY-----MLPRIRSSTK 1078
Query: 786 PAQLR---TDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCM 842
AQ +DTE K + +S +++ S ++ PK R ++ R + +
Sbjct: 1079 KAQTNDSDSDTESKRQAQRSSASESETDDSDDDKK----------PKRRGRPRSVRKDLV 1128
Query: 843 PGHTEDAADHFKESW 857
G T+ F +++
Sbjct: 1129 EGFTDAEIRRFIKAY 1143
Score = 42 (19.8 bits), Expect = 4.4e-54, Sum P(3) = 4.4e-54
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 557 VDSGEIETERKRGPKGKKYPNYKEVDDEIG-EYS 589
V GE +KR P+ KK + DE G E+S
Sbjct: 1331 VTGGEEAKLKKRKPRVKKENKEPRLKDEHGVEFS 1364
>UNIPROTKB|E2R5Z7 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000017614
NextBio:20854276 Uniprot:E2R5Z7
Length = 1831
Score = 442 (160.7 bits), Expect = 1.9e-54, Sum P(3) = 1.9e-54
Identities = 130/387 (33%), Positives = 203/387 (52%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 218
LH++LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI +
Sbjct: 692 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNY---------KA 742
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKD------FLVKSCGKLWIL 272
+ K + N MEL+K CNH L P + ++ L++S GKL +L
Sbjct: 743 LAKGTRGSTSGFL---NIVMELKKCCNHCYLIKPPEENERENGQEVLLSLIRSSGKLILL 799
Query: 273 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332
D++L +L+ G+RVL+FS M ++LDIL EYL + ++R+DG+ E R+ A+ FN+
Sbjct: 800 DKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNAD 859
Query: 333 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 390
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V + +
Sbjct: 860 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLV 919
Query: 391 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 450
+ V++ + + ++ V D G+ + + G R+N + + ++
Sbjct: 920 TKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRT-VLENNSG--RSNSNPFNKEELTAILK 976
Query: 451 AGRFDQRTTHEERRMTLETLLHDEE-RYQETVHDVPSLQEVNRMIARSEDEVELFDQMDE 509
G D E + + DE R ET + S + ++ S+ +V F M++
Sbjct: 977 FGAEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELL--SQFKVANFATMED 1034
Query: 510 EFGWIEEMTR--YDQV-PKWLRASTKE 533
E +EE +D++ P+ R +E
Sbjct: 1035 EEE-LEERPHKDWDEIIPEEQRKKVEE 1060
Score = 219 (82.2 bits), Expect = 1.9e-54, Sum P(3) = 1.9e-54
Identities = 43/132 (32%), Positives = 72/132 (54%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRS 55
++ WQ E W P ++ + Y+G R+ + E LKFN L+TTYE ++ D++
Sbjct: 548 LTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDKT 607
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L ++W ++ +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 608 VLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFIM 667
Query: 116 PEVFDNRKAFHD 127
PE F+ + F +
Sbjct: 668 PEKFEFWEDFEE 679
Score = 51 (23.0 bits), Expect = 1.9e-54, Sum P(3) = 1.9e-54
Identities = 31/157 (19%), Positives = 60/157 (38%)
Query: 675 VSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGED 734
+ PV K L+ R L K + LE+ + AV+G ++ R + E+
Sbjct: 1300 ILPVETDKKPQGKQLQTRADYLLKLLRKSLEK-KGAVTGGEEAKLKKR----KPRVKKEN 1354
Query: 735 EQVLQPKIKRKRSIRVR-PRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDT 793
++ P++K + + PRH+ EE D L + + +NK + + +
Sbjct: 1355 KE---PRLKDEHGVEFSSPRHSDNPSEEGEVKDDGLEKSPMKKKQKKKENKENKEKQMSS 1411
Query: 794 EMKAHGESNSLRH-DQSE-PSSKSRRNLPSRKIANAP 828
G+ + D+ E P ++ K + P
Sbjct: 1412 RKDKEGDKERKKSKDKKEKPKGGDAKSSSKSKRSQGP 1448
Score = 47 (21.6 bits), Expect = 5.1e-54, Sum P(3) = 5.1e-54
Identities = 31/135 (22%), Positives = 50/135 (37%)
Query: 765 TDTPLHRGDSSLLPFQMDNKYPA-QLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRK 823
TD L D +LP + D K QL+T + SL + + + L RK
Sbjct: 1289 TDPELKLTDKKILPVETDKKPQGKQLQTRADYLLKLLRKSLEKKGAVTGGEEAK-LKKRK 1347
Query: 824 IANAPKSRASLKTGRLNCMPGHTEDAADHFKE-SWDGKIANASGSSNFSAKMSDVIQRRC 882
P+ + K RL G + H S +G++ + G K +
Sbjct: 1348 ----PRVKKENKEPRLKDEHGVEFSSPRHSDNPSEEGEVKD-DGLEKSPMKKKQKKKENK 1402
Query: 883 KNVISKLQRRIEKEG 897
+N ++ R +KEG
Sbjct: 1403 ENKEKQMSSRKDKEG 1417
Score = 44 (20.5 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 42/195 (21%), Positives = 75/195 (38%)
Query: 671 LTQIVSPVSPQKFGSLSALEARPGSLS----KRMPDELEEGEIAVSG-DSHMDHQQSGSW 725
LT I+ + F L E+ P + R+ E E E++ S D + + ++
Sbjct: 971 LTAILKFGAEDLFKELEGEESEPQEMDIDEILRLA-ETRENEVSTSATDELLSQFKVANF 1029
Query: 726 THDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKY 785
DE E E+ +P I R VE EER ++ +LP +
Sbjct: 1030 ATMEDEEELEE--RPHKDWDEIIPEEQRKKVEE-EERQKELEEIY-----MLPRIRSSTK 1081
Query: 786 PAQLR---TDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCM 842
AQ +DTE K + +S +++ S ++ PK R ++ R + +
Sbjct: 1082 KAQTNDSDSDTESKRQAQRSSASESETDDSDDDKK----------PKRRGRPRSVRKDLV 1131
Query: 843 PGHTEDAADHFKESW 857
G T+ F +++
Sbjct: 1132 EGFTDAEIRRFIKAY 1146
Score = 42 (19.8 bits), Expect = 1.7e-53, Sum P(3) = 1.7e-53
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 557 VDSGEIETERKRGPKGKKYPNYKEVDDEIG-EYS 589
V GE +KR P+ KK + DE G E+S
Sbjct: 1335 VTGGEEAKLKKRKPRVKKENKEPRLKDEHGVEFS 1368
Score = 37 (18.1 bits), Expect = 5.6e-53, Sum P(3) = 5.6e-53
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 567 KRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPV 601
K G K +K K+ + G+ +S +R+ PV
Sbjct: 1415 KEGDKERKKSKDKKEKPKGGDAKSSSKSKRSQGPV 1449
>UNIPROTKB|F1RN66 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000015489
Uniprot:F1RN66
Length = 1794
Score = 448 (162.8 bits), Expect = 5.5e-54, Sum P(3) = 5.5e-54
Identities = 134/383 (34%), Positives = 201/383 (52%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 218
LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI T + + K
Sbjct: 680 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI-LTRNYKALSKGSKGS 738
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------YFSDLSKDFLVKSCGKLWIL 272
N MEL+K CNH L P Y + L++S GKL +L
Sbjct: 739 TSG-----------FLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILL 787
Query: 273 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332
D++LI+L+ G+RVL+FS M ++LDIL EYL++RQ ++R+DG+ E R+ A+ FN+
Sbjct: 788 DKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE 847
Query: 333 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 390
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHR G +V + +
Sbjct: 848 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLV 907
Query: 391 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKD-RYIGSIEGLIRN-NIQQYKIDM---A 445
+ V++ + + ++ V D GK + GS N ++ + A
Sbjct: 908 TKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGA 967
Query: 446 DEVINAGRFDQRTTHEERRMTLETLL-----HDEERYQETVHD-VPSLQEVNRMIARSED 499
+E+ +++ E + M ++ +L H+ E TV D + S +V ED
Sbjct: 968 EELFKEPEGEEQ---EPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVANFSNMDED 1024
Query: 500 EVELFDQMDEEFGWIEEMTRYDQ 522
++EL + + + W EE+ DQ
Sbjct: 1025 DIELEPERNSK-NW-EEIIPEDQ 1045
Score = 217 (81.4 bits), Expect = 5.5e-54, Sum P(3) = 5.5e-54
Identities = 43/132 (32%), Positives = 75/132 (56%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRS 55
++ WQ E+ W ++ + Y+G + R+ + + E LKFN+L+TTYE ++ D++
Sbjct: 536 LTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKA 595
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L ++W +I +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 596 FLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIM 655
Query: 116 PEVFDNRKAFHD 127
PE F + + F +
Sbjct: 656 PEKFSSWEDFEE 667
Score = 49 (22.3 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 20/86 (23%), Positives = 36/86 (41%)
Query: 732 GEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT 791
G +E +P+ + + + ++R E PL GD L F++ N +
Sbjct: 966 GAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVAN-FSNMDED 1024
Query: 792 DTEMKAHGESNSLRHDQSEPSSKSRR 817
D E++ E NS ++ P + RR
Sbjct: 1025 DIELEP--ERNSKNWEEIIPEDQRRR 1048
Score = 44 (20.5 bits), Expect = 6.0e-36, Sum P(3) = 6.0e-36
Identities = 24/104 (23%), Positives = 40/104 (38%)
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLA--RD--LDRYRCQRRLLLTGTPLQNDXXXXX 108
D S+ +KV K +D A+ K S+LA R L + + Q+ + + + D
Sbjct: 67 DNSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQHQASSNSGSEEDSSSSE 126
Query: 109 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 152
EV + DW Q P+ + D E E++
Sbjct: 127 DSDDSSS-EVKRKKHKDEDW--QMSGSGSPSQSGSDSESEEERE 167
Score = 42 (19.8 bits), Expect = 5.5e-54, Sum P(3) = 5.5e-54
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 716 HMDHQQSGSWTHDR 729
H DH+ S +TH +
Sbjct: 1724 HSDHRSSSEYTHHK 1737
Score = 41 (19.5 bits), Expect = 7.0e-54, Sum P(3) = 7.0e-54
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 729 RDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLH 770
R+ E + + K ++ + + ER ++ S +D P+H
Sbjct: 1435 RENKVKEAIQKEKDIKEEKLNESKSESKERSKKSSLSDAPVH 1476
Score = 38 (18.4 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 351 NLQSADTVIIYDPDPNPKNEEQAVA--RAHRIGQK---REVKVIYM 391
N+ D I +P+ N KN E+ + + R+ ++ +E++ IYM
Sbjct: 1020 NMDEDD--IELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYM 1063
Score = 37 (18.1 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 1128 PKDMRHTQQTTHQHGWANQ 1146
P++ Q H+HG+ +Q
Sbjct: 882 PQNDLQAQARAHRHGYLSQ 900
>UNIPROTKB|I3L6N4 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000022643
Uniprot:I3L6N4
Length = 1798
Score = 448 (162.8 bits), Expect = 5.6e-54, Sum P(3) = 5.6e-54
Identities = 134/383 (34%), Positives = 201/383 (52%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 218
LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI T + + K
Sbjct: 680 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI-LTRNYKALSKGSKGS 738
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------YFSDLSKDFLVKSCGKLWIL 272
N MEL+K CNH L P Y + L++S GKL +L
Sbjct: 739 TSG-----------FLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILL 787
Query: 273 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332
D++LI+L+ G+RVL+FS M ++LDIL EYL++RQ ++R+DG+ E R+ A+ FN+
Sbjct: 788 DKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE 847
Query: 333 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 390
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHR G +V + +
Sbjct: 848 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLV 907
Query: 391 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKD-RYIGSIEGLIRN-NIQQYKIDM---A 445
+ V++ + + ++ V D GK + GS N ++ + A
Sbjct: 908 TKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGA 967
Query: 446 DEVINAGRFDQRTTHEERRMTLETLL-----HDEERYQETVHD-VPSLQEVNRMIARSED 499
+E+ +++ E + M ++ +L H+ E TV D + S +V ED
Sbjct: 968 EELFKEPEGEEQ---EPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVANFSNMDED 1024
Query: 500 EVELFDQMDEEFGWIEEMTRYDQ 522
++EL + + + W EE+ DQ
Sbjct: 1025 DIELEPERNSK-NW-EEIIPEDQ 1045
Score = 217 (81.4 bits), Expect = 5.6e-54, Sum P(3) = 5.6e-54
Identities = 43/132 (32%), Positives = 75/132 (56%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRS 55
++ WQ E+ W ++ + Y+G + R+ + + E LKFN+L+TTYE ++ D++
Sbjct: 536 LTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKA 595
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L ++W +I +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 596 FLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIM 655
Query: 116 PEVFDNRKAFHD 127
PE F + + F +
Sbjct: 656 PEKFSSWEDFEE 667
Score = 49 (22.3 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 20/86 (23%), Positives = 36/86 (41%)
Query: 732 GEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT 791
G +E +P+ + + + ++R E PL GD L F++ N +
Sbjct: 966 GAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVAN-FSNMDED 1024
Query: 792 DTEMKAHGESNSLRHDQSEPSSKSRR 817
D E++ E NS ++ P + RR
Sbjct: 1025 DIELEP--ERNSKNWEEIIPEDQRRR 1048
Score = 44 (20.5 bits), Expect = 6.0e-36, Sum P(3) = 6.0e-36
Identities = 24/104 (23%), Positives = 40/104 (38%)
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLA--RD--LDRYRCQRRLLLTGTPLQNDXXXXX 108
D S+ +KV K +D A+ K S+LA R L + + Q+ + + + D
Sbjct: 67 DNSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQHQASSNSGSEEDSSSSE 126
Query: 109 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 152
EV + DW Q P+ + D E E++
Sbjct: 127 DSDDSSS-EVKRKKHKDEDW--QMSGSGSPSQSGSDSESEEERE 167
Score = 42 (19.8 bits), Expect = 5.6e-54, Sum P(3) = 5.6e-54
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 716 HMDHQQSGSWTHDR 729
H DH+ S +TH +
Sbjct: 1728 HSDHRSSSEYTHHK 1741
Score = 41 (19.5 bits), Expect = 7.1e-54, Sum P(3) = 7.1e-54
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 729 RDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLH 770
R+ E + + K ++ + + ER ++ S +D P+H
Sbjct: 1439 RENKVKEAIQKEKDIKEEKLNESKSESKERSKKSSLSDAPVH 1480
Score = 38 (18.4 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 351 NLQSADTVIIYDPDPNPKNEEQAVA--RAHRIGQK---REVKVIYM 391
N+ D I +P+ N KN E+ + + R+ ++ +E++ IYM
Sbjct: 1020 NMDEDD--IELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYM 1063
Score = 37 (18.1 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 1128 PKDMRHTQQTTHQHGWANQ 1146
P++ Q H+HG+ +Q
Sbjct: 882 PQNDLQAQARAHRHGYLSQ 900
>UNIPROTKB|I3LIS2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:CU570924
EMBL:CU928692 Ensembl:ENSSSCT00000032432 Uniprot:I3LIS2
Length = 1799
Score = 448 (162.8 bits), Expect = 5.6e-54, Sum P(3) = 5.6e-54
Identities = 134/383 (34%), Positives = 201/383 (52%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 218
LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI T + + K
Sbjct: 681 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI-LTRNYKALSKGSKGS 739
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------YFSDLSKDFLVKSCGKLWIL 272
N MEL+K CNH L P Y + L++S GKL +L
Sbjct: 740 TSG-----------FLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLIRSSGKLILL 788
Query: 273 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332
D++LI+L+ G+RVL+FS M ++LDIL EYL++RQ ++R+DG+ E R+ A+ FN+
Sbjct: 789 DKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE 848
Query: 333 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IY 390
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHR G +V + +
Sbjct: 849 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLV 908
Query: 391 MEAVVDKISSHQKEDELRSGGTVDLEDDLAGKD-RYIGSIEGLIRN-NIQQYKIDM---A 445
+ V++ + + ++ V D GK + GS N ++ + A
Sbjct: 909 TKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAILKFGA 968
Query: 446 DEVINAGRFDQRTTHEERRMTLETLL-----HDEERYQETVHD-VPSLQEVNRMIARSED 499
+E+ +++ E + M ++ +L H+ E TV D + S +V ED
Sbjct: 969 EELFKEPEGEEQ---EPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVANFSNMDED 1025
Query: 500 EVELFDQMDEEFGWIEEMTRYDQ 522
++EL + + + W EE+ DQ
Sbjct: 1026 DIELEPERNSK-NW-EEIIPEDQ 1046
Score = 217 (81.4 bits), Expect = 5.6e-54, Sum P(3) = 5.6e-54
Identities = 43/132 (32%), Positives = 75/132 (56%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRS 55
++ WQ E+ W ++ + Y+G + R+ + + E LKFN+L+TTYE ++ D++
Sbjct: 537 LTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKA 596
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L ++W +I +DEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 597 FLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIM 656
Query: 116 PEVFDNRKAFHD 127
PE F + + F +
Sbjct: 657 PEKFSSWEDFEE 668
Score = 49 (22.3 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 20/86 (23%), Positives = 36/86 (41%)
Query: 732 GEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT 791
G +E +P+ + + + ++R E PL GD L F++ N +
Sbjct: 967 GAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVAN-FSNMDED 1025
Query: 792 DTEMKAHGESNSLRHDQSEPSSKSRR 817
D E++ E NS ++ P + RR
Sbjct: 1026 DIELEP--ERNSKNWEEIIPEDQRRR 1049
Score = 44 (20.5 bits), Expect = 6.0e-36, Sum P(3) = 6.0e-36
Identities = 24/104 (23%), Positives = 40/104 (38%)
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLA--RD--LDRYRCQRRLLLTGTPLQNDXXXXX 108
D S+ +KV K +D A+ K S+LA R L + + Q+ + + + D
Sbjct: 68 DNSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQHQASSNSGSEEDSSSSE 127
Query: 109 XXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 152
EV + DW Q P+ + D E E++
Sbjct: 128 DSDDSSS-EVKRKKHKDEDW--QMSGSGSPSQSGSDSESEEERE 168
Score = 42 (19.8 bits), Expect = 5.6e-54, Sum P(3) = 5.6e-54
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 716 HMDHQQSGSWTHDR 729
H DH+ S +TH +
Sbjct: 1729 HSDHRSSSEYTHHK 1742
Score = 41 (19.5 bits), Expect = 7.1e-54, Sum P(3) = 7.1e-54
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 729 RDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLH 770
R+ E + + K ++ + + ER ++ S +D P+H
Sbjct: 1440 RENKVKEAIQKEKDIKEEKLNESKSESKERSKKSSLSDAPVH 1481
Score = 38 (18.4 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 351 NLQSADTVIIYDPDPNPKNEEQAVA--RAHRIGQK---REVKVIYM 391
N+ D I +P+ N KN E+ + + R+ ++ +E++ IYM
Sbjct: 1021 NMDEDD--IELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYM 1064
Score = 37 (18.1 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 1128 PKDMRHTQQTTHQHGWANQ 1146
P++ Q H+HG+ +Q
Sbjct: 883 PQNDLQAQARAHRHGYLSQ 901
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 353 (129.3 bits), Expect = 6.9e-54, Sum P(2) = 6.9e-54
Identities = 92/239 (38%), Positives = 137/239 (57%)
Query: 223 PIYQAKVYKTLNNRCMELRKTCNHP-LLNYPYFSDLSKDF-----LVKSCGKLWILDRIL 276
P+ A+V L N M L++ CNH L+ YP + DF LV++ GK ILDR+L
Sbjct: 567 PV-DAQVNLKLQNILMLLKRCCNHAYLIEYP-LDPTTGDFKIDEQLVEASGKFLILDRML 624
Query: 277 IKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDC 336
+L++ GH+VL+FS MT +LDIL +Y R Y R+DG+ S DR+ + F+S D +
Sbjct: 625 PELKKRGHKVLIFSQMTSILDILMDYCYLRGYEYSRLDGSMSYADRDENMKKFSS-DPEV 683
Query: 337 FIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVD 396
F+FLLS RA G G+NL SADTVII+D D NP+ + QA R HRIGQ + V V++ +
Sbjct: 684 FLFLLSTRAGGLGINLTSADTVIIFDSDWNPQADLQAQDRCHRIGQTKPV-VVHRLITAN 742
Query: 397 KISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFD 455
I E R+ LE + K+++ GS + ++ + +D E++ + +D
Sbjct: 743 TIDEKILE---RASAKRKLEKMVIHKNKFKGS-KAELKQSKSCLDVDELVELLKSRDYD 797
Score = 294 (108.6 bits), Expect = 6.9e-54, Sum P(2) = 6.9e-54
Identities = 77/227 (33%), Positives = 113/227 (49%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFS---QEVAALKF-NVLVTTYEFIMYDRSKLSK 59
W SE ++ P VS + Y G + +R L Q +L+ V+VT++E M DR L +
Sbjct: 296 WISEFKRFTPEVSVLLYHGPQKERLDLVKKIRQHQGSLRMCPVVVTSFEIAMRDRKFLQR 355
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
W Y+I+DE R+K+ L ++L +LLLTGTPLQN+ P+VF
Sbjct: 356 FHWNYLIVDEGHRIKNLNCRLVQELKMLPTDNKLLLTGTPLQNNLSELWSLLNFLLPDVF 415
Query: 120 DNRKAFHDWFSQPFQKEGPTHNAD-DDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 178
D+ K+F WF + T +D ++ + E++ I+H LH IL PF+LRR DV
Sbjct: 416 DDLKSFESWF------DISTITSDAENIVANEREQNILHMLHLILTPFLLRRLKSDVTLE 469
Query: 179 LPPKVSIVLRCRMSAIQSAIYDWI--KATGTLRVDPEDEKRRVQKNP 223
+PPK IV+ ++ Q A Y I K L +DE P
Sbjct: 470 VPPKKEIVVYAPLTNKQEAFYMAIVNKTIAKLLGQEKDESAPAPLTP 516
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 331 (121.6 bits), Expect = 1.1e-53, Sum P(2) = 1.1e-53
Identities = 71/163 (43%), Positives = 100/163 (61%)
Query: 247 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR 306
P+ +Y S D + GKL LD +LI L+R GHR+L++ MT+++ I EEYL ++
Sbjct: 1216 PIFDYSNIRMPSMDRFIAESGKLAKLDELLIDLKRGGHRILIYFQMTRMMQIFEEYLAYK 1275
Query: 307 QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPN 366
Y R+DG+T++E R + + ++ + FIF+LS RA G GLNL SADTVI YD D N
Sbjct: 1276 SYKYIRLDGSTTIESRREMVQAWQTNP-EIFIFMLSTRAGGLGLNLTSADTVIFYDSDWN 1334
Query: 367 PKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQKEDE 406
P + QA+ RAHRIGQ ++VKV + + KI KE E
Sbjct: 1335 PTIDSQAMDRAHRIGQTKQVKVFRLVTRNTIEQKILERAKEKE 1377
Score = 322 (118.4 bits), Expect = 1.1e-53, Sum P(2) = 1.1e-53
Identities = 79/251 (31%), Positives = 131/251 (52%)
Query: 4 WQSELHKWLPSVSCIYYVG-AKDQRSRLFSQEVAALK------FNVLVTTYEFIMYDRSK 56
WQ E+ K++P + Y G AKD++ + +L+ F+VLVT+Y+ I+ D +
Sbjct: 736 WQQEITKFVPEFKVLPYWGNAKDRKILRKFWDRKSLRYDKDSPFHVLVTSYQLIVADIAY 795
Query: 57 LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXP 116
K+ W+Y+I+DEAQ +K S + L C+ RLLLTGTP+QN P
Sbjct: 796 FQKMKWQYMILDEAQAIKSSSSSRWKSLLNLTCRNRLLLTGTPIQNSMQELWALLHFIMP 855
Query: 117 EVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVE 176
+FD+ F DWF++ + ++ + D E++ + RLH IL+PFMLRR ++V+
Sbjct: 856 SIFDSHDEFSDWFAKDIESHAQSNTSLD-----EQQ---LRRLHMILKPFMLRRIKKNVQ 907
Query: 177 GSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNR 236
L KV I + C ++ Q +Y +++ ++ + + ++ N +L N
Sbjct: 908 SELGDKVEIDVYCDLTTRQKKLYQQLRSQISMS---DTDLLELESN---STSSDSSLANL 961
Query: 237 CMELRKTCNHP 247
M+ RK CNHP
Sbjct: 962 VMQFRKVCNHP 972
>ASPGD|ASPL0000056677 [details] [associations]
symbol:AN1024 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000172362 EnsemblFungi:CADANIAT00001623 OMA:NNITELW
Uniprot:C8VTY9
Length = 868
Score = 332 (121.9 bits), Expect = 2.5e-53, Sum P(2) = 2.5e-53
Identities = 74/228 (32%), Positives = 122/228 (53%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRL---FS--QEVAALKFNVLVTTYEFIMYDRS 55
+S W E +W P + + Y G +D+R++L F ++ + F V+ T+YE M DR
Sbjct: 262 VSNWVDEFARWTPGIKTVLYHGTRDERAQLRKKFMNLRDQKSPDFPVVCTSYEICMNDRK 321
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L++ W+YII+DE R+K+ L ++L Y RLL+TGTPLQN+
Sbjct: 322 FLAQYQWRYIIVDEGHRLKNMNCRLIKELLSYNSANRLLITGTPLQNNITELWSLLHFLL 381
Query: 116 PEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDV 175
PE+F++ +F +WF F +N D +E K+ ++ +H IL+PF+LRR DV
Sbjct: 382 PEIFNDLNSFQNWFD--FSSV-LDNNGQTDMIERRKRTLV-STMHSILKPFLLRRVKTDV 437
Query: 176 EGSLPPKVSIVLRCRMSAIQSAIY-DWIKATGTLRVDPEDEKRRVQKN 222
E +LP K +L ++ Q +Y + + TG ++ + +R + KN
Sbjct: 438 ESALPKKREYILYAPLTLEQKDLYREILNGTGRQYLEEKATERLMAKN 485
Score = 311 (114.5 bits), Expect = 2.5e-53, Sum P(2) = 2.5e-53
Identities = 87/245 (35%), Positives = 134/245 (54%)
Query: 213 EDEKRRVQK-NPIYQAK---VYKTLNNRCMELRKTCNHPLLNY-PYFSDLSK--DFLVKS 265
E E+ +++ N I AK K + N M+ R CN P Y P+ D S + LV +
Sbjct: 565 ESEQEEIERANTIKLAKREIAQKKMQNPVMQARLACNSPHNFYWPWAEDPSSIDETLVTA 624
Query: 266 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL-QWRQLVYRRIDGTTSLEDRES 324
GK+ +LDR++ L GH++L+FS LDIL+++ R RIDG S DR++
Sbjct: 625 SGKMLLLDRLIPCLLNKGHKILIFSQFKTQLDILQDWATHLRSWNCCRIDGAISQADRQA 684
Query: 325 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 384
I FN+ D D IFLLS RA G+G+NL +ADTVI++D D NP+ + QA RAHRIGQ +
Sbjct: 685 QIKAFNT-DKDYKIFLLSTRAGGQGINLVAADTVILFDSDWNPQQDLQAQDRAHRIGQTK 743
Query: 385 EVKVIYMEAVVDKISSH--QKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKI 442
V ++Y A + +K D R + ++ GK + + S + R+++ + K
Sbjct: 744 PV-IVYRLATKGTVEQTLLEKADSKRRLERLVIQK---GKFKSLLSESTMSRDDVDELKR 799
Query: 443 DMADE 447
+ ++
Sbjct: 800 ALGED 804
>SGD|S000003118 [details] [associations]
symbol:INO80 "ATPase and nucleosome spacing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042766 "nucleosome mobilization" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IMP] [GO:0016584
"nucleosome positioning" evidence=IDA] [GO:0031011 "Ino80 complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 SGD:S000003118
GO:GO:0005524 EMBL:BK006941 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0016887 GO:GO:0006366 GO:GO:0031011
GO:GO:0006348 GO:GO:0004386 GO:GO:0043486 GO:GO:0042766 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:X99960 GO:GO:0016584 GO:GO:0043618 KO:K11665
GeneTree:ENSGT00680000100052 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
EMBL:Z72672 PIR:S60416 RefSeq:NP_011365.1 ProteinModelPortal:P53115
SMR:P53115 DIP:DIP-1386N IntAct:P53115 MINT:MINT-388693
STRING:P53115 PaxDb:P53115 PeptideAtlas:P53115 EnsemblFungi:YGL150C
GeneID:852728 KEGG:sce:YGL150C CYGD:YGL150c OMA:DEFSDWF
NextBio:972117 Genevestigator:P53115 GermOnline:YGL150C
Uniprot:P53115
Length = 1489
Score = 326 (119.8 bits), Expect = 2.9e-53, Sum P(2) = 2.9e-53
Identities = 85/274 (31%), Positives = 142/274 (51%)
Query: 4 WQSELHKWLPSVSCIYYVG-AKDQRS-RLF--SQEVAALK---FNVLVTTYEFIMYDRSK 56
W +E+ K+LP + Y G A D++ R F + + K F+V+VT+Y+ ++ D +
Sbjct: 770 WVNEISKFLPQFKILPYWGNANDRKVLRKFWDRKNLRYNKNAPFHVMVTSYQMVVTDANY 829
Query: 57 LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXP 116
L K+ W+Y+I+DEAQ +K +S ++L + C+ RLLLTGTP+QN P
Sbjct: 830 LQKMKWQYMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHFIMP 889
Query: 117 EVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVE 176
+FD+ F++WFS+ + +H + L ++ + RLH IL+PFMLRR ++V+
Sbjct: 890 SLFDSHDEFNEWFSKDIE----SHAEANTKLNQQQ----LRRLHMILKPFMLRRVKKNVQ 941
Query: 177 GSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK--NPIYQAKVYKTLN 234
L K+ I + C ++ Q+ +Y +K+ + D + N + + L
Sbjct: 942 SELGDKIEIDVLCDLTQRQAKLYQVLKSQISTNYDAIENAATNDSTSNSASNSGSDQNLI 1001
Query: 235 NRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGK 268
N M+ RK CNHP L +D+ F + GK
Sbjct: 1002 NAVMQFRKVCNHPDLFER--ADVDSPFSFTTFGK 1033
Score = 324 (119.1 bits), Expect = 2.9e-53, Sum P(2) = 2.9e-53
Identities = 67/143 (46%), Positives = 97/143 (67%)
Query: 249 LNYPYFSDLSK---DFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW 305
LN + S++S D + KL LD +L+KL+ GHRVL++ MTK++D++EEYL +
Sbjct: 1278 LNKNFSSNISMPSMDRFITESAKLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTY 1337
Query: 306 RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP 365
RQ + R+DG++ LEDR + D+ ++ + F+FLLS RA G G+NL +ADTVI YD D
Sbjct: 1338 RQYNHIRLDGSSKLEDRRDLVHDWQTNP-EIFVFLLSTRAGGLGINLTAADTVIFYDSDW 1396
Query: 366 NPKNEEQAVARAHRIGQKREVKV 388
NP + QA+ RAHR+GQ R+V V
Sbjct: 1397 NPTIDSQAMDRAHRLGQTRQVTV 1419
Score = 43 (20.2 bits), Expect = 8.8e-24, Sum P(2) = 8.8e-24
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 538 IANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDE 595
++ L+ +PS N F + + ER GPK ++K + E+ E + + E
Sbjct: 1128 LSKLTGEPSLNEFFRVSTTPLLKRV-IERTNGPKNTDSLSFKTITQELLEVTRNAPSE 1184
Score = 40 (19.1 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 33 QEVAALKF-NVLVTTYEFIMYDRSKLS-KVDWKYI-------IIDEAQRMKDRESVLARD 83
Q++ +F N +VT Y I D SKL+ K+ K +I++A+R ++RE L +
Sbjct: 349 QKIKKRRFTNCIVTDYNPI--D-SKLNIKITLKQYHVKRLKKLINDAKREREREEALKNN 405
Query: 84 L 84
+
Sbjct: 406 V 406
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 438 (159.2 bits), Expect = 4.5e-53, Sum P(3) = 4.5e-53
Identities = 104/236 (44%), Positives = 147/236 (62%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 218
LH++LEPF+LRR +DVE SLP KV +LR MSA Q Y WI T +
Sbjct: 694 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVDMSAQQKQFYKWI-LTRNFKA-------- 744
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHP-LLNYPYF--SDLSKDFL---VKSCGKLWIL 272
+ K + + N MEL+K CNH L+ P +D ++ L V+ GKL +L
Sbjct: 745 LSKGTRGSSSGFL---NIVMELKKCCNHAFLIKQPEDGENDAPQEHLQSLVRGGGKLVLL 801
Query: 273 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332
D++L +L+ G+RVL+FS M ++LDIL +YL ++ ++R+DG+ E R+ A+ FN+
Sbjct: 802 DKLLTRLKDRGNRVLIFSQMVRMLDILADYLSMKRYQFQRLDGSIKGELRKQALDHFNAE 861
Query: 333 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V +
Sbjct: 862 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNI 917
Score = 213 (80.0 bits), Expect = 4.5e-53, Sum P(3) = 4.5e-53
Identities = 41/132 (31%), Positives = 71/132 (53%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRL-----FSQEVAALKFNVLVTTYEFIMYDRS 55
++ WQ E W P ++ + Y+G R + + + +KFN L+TTYE ++ D+
Sbjct: 550 LTSWQREFDTWAPDMNVVVYLGDVTSRKTIRDYEWINPQTKRIKFNALLTTYEILLKDKG 609
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L ++W ++ +DEA R+K+ +S+L + L +R RLL+TGTPLQN
Sbjct: 610 VLGNINWAFLGVDEAHRLKNDDSLLYKTLIDFRSNHRLLITGTPLQNSLKELWSLLHFLM 669
Query: 116 PEVFDNRKAFHD 127
+ F++ + F D
Sbjct: 670 SDKFESWEDFED 681
Score = 48 (22.0 bits), Expect = 4.5e-53, Sum P(3) = 4.5e-53
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 681 QKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQP 740
QK + + P S S + + + V S + H+ SGS + D+ ED++ +P
Sbjct: 1064 QKQKEMEDIYMLPRSRSSNKKAQANDSDSDVG--SKLKHRSSGS-DSETDDSEDDK--RP 1118
Query: 741 KIKRKRSIRVRPRHTVE 757
K +R R R R ++ VE
Sbjct: 1119 K-RRGRP-RAR-KNNVE 1132
Score = 39 (18.8 bits), Expect = 2.7e-50, Sum P(5) = 2.7e-50
Identities = 8/25 (32%), Positives = 9/25 (36%)
Query: 716 HMDHQQSGSWTHDRDEGEDEQVLQP 740
H + G W DR G QP
Sbjct: 1618 HFPNDDRGDWQRDRKYGYPGNSNQP 1642
Score = 38 (18.4 bits), Expect = 2.7e-50, Sum P(5) = 2.7e-50
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 553 SNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGE--YSEASSDE 595
S + +G+ +KR P+ KK E+ +EI S+ S+E
Sbjct: 1330 SQDAIKAGDEPKIKKRKPRMKKKAPSNELVNEIASPRLSDNPSEE 1374
Score = 37 (18.1 bits), Expect = 2.7e-50, Sum P(5) = 2.7e-50
Identities = 21/79 (26%), Positives = 34/79 (43%)
Query: 412 TVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLL 471
T D EDD K R G +NN++ + I A + + ER LE +
Sbjct: 1109 TDDSEDDKRPKRR--GRPRAR-KNNVEGFTDAEIRRFIKA--YKKFGAPLER---LEAIA 1160
Query: 472 HDEERYQETVHDVPSLQEV 490
D E ++++ D+ L E+
Sbjct: 1161 RDSELVEKSIADLKRLGEL 1179
Score = 37 (18.1 bits), Expect = 3.5e-50, Sum P(5) = 3.5e-50
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 670 RLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGD 714
+L++ + P+K L+ R L K + +LE + +GD
Sbjct: 1294 KLSEKILLDDPEKKPQGKQLQMRTDYLLKMLKKDLESQDAIKAGD 1338
>UNIPROTKB|F1NP27 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02065411 EMBL:AADN02065412
EMBL:AADN02065413 IPI:IPI00591777 Ensembl:ENSGALT00000024661
ArrayExpress:F1NP27 Uniprot:F1NP27
Length = 1803
Score = 467 (169.5 bits), Expect = 2.7e-52, Sum P(3) = 2.7e-52
Identities = 108/236 (45%), Positives = 146/236 (61%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 218
LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI T + + K
Sbjct: 678 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI-LTRNYKALSKGSKGS 736
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------YFSDLSKDFLVKSCGKLWIL 272
N MEL+K CNH L P Y + L++S GKL +L
Sbjct: 737 TSG-----------FLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQHLIRSSGKLILL 785
Query: 273 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332
D++LI+L+ G+RVL+FS M ++LDIL EYL++RQ ++R+DG+ E R+ A+ FN+
Sbjct: 786 DKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE 845
Query: 333 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V +
Sbjct: 846 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNI 901
Score = 165 (63.1 bits), Expect = 2.7e-52, Sum P(3) = 2.7e-52
Identities = 31/89 (34%), Positives = 55/89 (61%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRS 55
++ WQ E+ W P ++ + Y+G R+ + + E LKFN+L+TTYE ++ D+S
Sbjct: 538 LTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKS 597
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDL 84
L ++W +I +DEA R+K+ +S+L + L
Sbjct: 598 FLGGLNWAFIGVDEAHRLKNDDSLLYKTL 626
Score = 58 (25.5 bits), Expect = 2.7e-52, Sum P(3) = 2.7e-52
Identities = 22/86 (25%), Positives = 38/86 (44%)
Query: 732 GEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT 791
G +E +P+ + + + ++R E R PL GD L F++ N +
Sbjct: 964 GAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKVAN-FSNMDED 1022
Query: 792 DTEMKAHGESNSLRHDQSEPSSKSRR 817
D E++ E NS ++ P S+ RR
Sbjct: 1023 DIELEP--ERNSRNWEEIIPESQRRR 1046
Score = 42 (19.8 bits), Expect = 1.3e-50, Sum P(3) = 1.3e-50
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 671 LTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGE---IAVSGDS 715
LTQ + P P K L+ R L K + +L E +A +G+S
Sbjct: 1276 LTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLARKEAQRLAGAGNS 1323
>UNIPROTKB|F1N8K8 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:AADN02065411
EMBL:AADN02065412 EMBL:AADN02065413 IPI:IPI00588290
Ensembl:ENSGALT00000023601 ArrayExpress:F1N8K8 Uniprot:F1N8K8
Length = 1804
Score = 467 (169.5 bits), Expect = 2.7e-52, Sum P(3) = 2.7e-52
Identities = 108/236 (45%), Positives = 146/236 (61%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 218
LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI T + + K
Sbjct: 678 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI-LTRNYKALSKGSKGS 736
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------YFSDLSKDFLVKSCGKLWIL 272
N MEL+K CNH L P Y + L++S GKL +L
Sbjct: 737 TSG-----------FLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQHLIRSSGKLILL 785
Query: 273 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332
D++LI+L+ G+RVL+FS M ++LDIL EYL++RQ ++R+DG+ E R+ A+ FN+
Sbjct: 786 DKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE 845
Query: 333 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
S+ F FLLS RA G G+NL SADTV+I+D D NP+N+ QA ARAHRIGQK++V +
Sbjct: 846 GSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNI 901
Score = 165 (63.1 bits), Expect = 2.7e-52, Sum P(3) = 2.7e-52
Identities = 31/89 (34%), Positives = 55/89 (61%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRS 55
++ WQ E+ W P ++ + Y+G R+ + + E LKFN+L+TTYE ++ D+S
Sbjct: 538 LTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKS 597
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDL 84
L ++W +I +DEA R+K+ +S+L + L
Sbjct: 598 FLGGLNWAFIGVDEAHRLKNDDSLLYKTL 626
Score = 58 (25.5 bits), Expect = 2.7e-52, Sum P(3) = 2.7e-52
Identities = 22/86 (25%), Positives = 38/86 (44%)
Query: 732 GEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT 791
G +E +P+ + + + ++R E R PL GD L F++ N +
Sbjct: 964 GAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKVAN-FSNMDED 1022
Query: 792 DTEMKAHGESNSLRHDQSEPSSKSRR 817
D E++ E NS ++ P S+ RR
Sbjct: 1023 DIELEP--ERNSRNWEEIIPESQRRR 1046
Score = 42 (19.8 bits), Expect = 1.3e-50, Sum P(3) = 1.3e-50
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 671 LTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGE---IAVSGDS 715
LTQ + P P K L+ R L K + +L E +A +G+S
Sbjct: 1277 LTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLARKEAQRLAGAGNS 1324
>POMBASE|SPAC1783.05 [details] [associations]
symbol:hrp1 "ATP-dependent DNA helicase Hrp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0000779 "condensed chromosome, centromeric
region" evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0007076 "mitotic chromosome
condensation" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IPI] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0035067 "negative
regulation of histone acetylation" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0048096 "chromatin-mediated maintenance
of transcription" evidence=TAS] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 PomBase:SPAC1783.05 Pfam:PF00385 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944
GO:GO:0030466 GO:GO:0000122 GO:GO:0000790 GO:GO:0030702
GO:GO:0004003 GO:GO:0007076 GO:GO:0048096 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000779 GO:GO:0035067 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0016592 GO:GO:0006369 KO:K11367
HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB EMBL:X99021 EMBL:AB027852
PIR:T43334 PIR:T50107 RefSeq:NP_593660.1 ProteinModelPortal:Q9US25
MINT:MINT-4979817 STRING:Q9US25 EnsemblFungi:SPAC1783.05.1
GeneID:2542363 KEGG:spo:SPAC1783.05 OMA:VERVIKW NextBio:20803422
GO:GO:0060303 Uniprot:Q9US25
Length = 1373
Score = 402 (146.6 bits), Expect = 8.8e-52, Sum P(3) = 8.8e-52
Identities = 137/416 (32%), Positives = 211/416 (50%)
Query: 141 NADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYD 200
N D E E+ I L + L+PF+LRR +DVE SLP K +LR +S +Q+ +
Sbjct: 582 NFDQPNAEQERD---IRDLQERLQPFILRRLKKDVEKSLPSKSERILRVELSDMQT---E 635
Query: 201 WIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD---- 256
W K T R + + + ++ +L N +EL+K NHP L +P ++
Sbjct: 636 WYKNILTKNY------RALTGHTDGRGQL--SLLNIVVELKKVSNHPYL-FPGAAEKWMM 686
Query: 257 ----LSKDFL---VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 309
+D L + + GK+ +LD++L +L+ GHRVL+FS M ++L+IL EY+ R
Sbjct: 687 GRKMTREDTLRGIIMNSGKMVLLDKLLQRLKHDGHRVLIFSQMVRMLNILGEYMSLRGYN 746
Query: 310 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 369
Y+R+DGT R +I FN+ DS F+FLLS RA G G+NL +ADTVII+D D NP+
Sbjct: 747 YQRLDGTIPASVRRVSIDHFNAPDSPDFVFLLSTRAGGLGINLNTADTVIIFDSDWNPQA 806
Query: 370 EEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDEL-RSGGTVDLEDDLAGKDRYIGS 428
+ QA+ARAHRIGQK V V Y D + +ED L R+ + LE + +G
Sbjct: 807 DLQAMARAHRIGQKNHVNV-YRFLSKDTV----EEDILERARRKMILEYAIIS----LGV 857
Query: 429 IEGLIRNNIQQYKIDMADEVINAGRFDQ-RTTHEERR---MTLETLL-HDEERYQETVHD 483
E + +Y ++ G + + T +++ M L+ +L H E+R ++ +D
Sbjct: 858 TEKSKNSKNDKYDAQELSAILKFGASNMFKATENQKKLENMNLDDILSHAEDR--DSSND 915
Query: 484 VPSLQEVNRMIARSEDEVELFDQMDEEFGWI-----EEMTRYDQVPKWLRAS-TKE 533
V + + E+ D E+ W EEM R ++ + L A KE
Sbjct: 916 VGGASMGGEEFLK---QFEVTDYKAEDLNWDDIIPEEEMERIEEEERMLAAQRAKE 968
Score = 238 (88.8 bits), Expect = 8.8e-52, Sum P(3) = 8.8e-52
Identities = 51/135 (37%), Positives = 73/135 (54%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRL------FSQEVAALKFNVLVTTYEFIMYDRSKL 57
WQ L W P ++ I Y G + R+ + S LKFN+L+TTYE+I+ D+ +L
Sbjct: 454 WQETLANWTPDLNSICYTGNTESRANIREYEFYLSTNSRKLKFNILLTTYEYILKDKQEL 513
Query: 58 SKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPE 117
+ + W+Y+ IDEA R+K+ ES L L ++R RLL+TGTPLQN+ P
Sbjct: 514 NNIRWQYLAIDEAHRLKNSESSLYETLSQFRTANRLLITGTPLQNNLKELASLVNFLMPG 573
Query: 118 VFDNRKAFHDWFSQP 132
F R + F QP
Sbjct: 574 KFYIRDELN--FDQP 586
Score = 46 (21.3 bits), Expect = 8.8e-15, Sum P(2) = 8.8e-15
Identities = 10/40 (25%), Positives = 25/40 (62%)
Query: 885 VISKLQRRIEKEGHQIVPLLTDLWKRIETSG-YVSGAGNN 923
++ KL +R++ +GH+++ + + + + + G Y+S G N
Sbjct: 708 LLDKLLQRLKHDGHRVL-IFSQMVRMLNILGEYMSLRGYN 746
Score = 43 (20.2 bits), Expect = 8.8e-52, Sum P(3) = 8.8e-52
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 808 QSEPSSKSRRNLPSRKIANAPKSRASLKT 836
Q+EP ++ R+ + +N +R S+KT
Sbjct: 1276 QAEPPKRALRSNSGKAASNKRTTRNSMKT 1304
Score = 42 (19.8 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 25/103 (24%), Positives = 50/103 (48%)
Query: 879 QRRCKNVISKLQ----RRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNIL--DLRKIDQ 932
+R +++ +LQ RR++K+ + +P ++ R+E S + NIL + R +
Sbjct: 591 ERDIRDLQERLQPFILRRLKKDVEKSLPSKSERILRVELSDMQTEWYKNILTKNYRALTG 650
Query: 933 RVD---RLEY-NGVMEL--VSDVQFMLKGAMQFYGFSHEVRSE 969
D +L N V+EL VS+ ++ GA + + ++ E
Sbjct: 651 HTDGRGQLSLLNIVVELKKVSNHPYLFPGAAEKWMMGRKMTRE 693
>ASPGD|ASPL0000052010 [details] [associations]
symbol:AN1255 species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000070
"mitotic sister chromatid segregation" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0060303 "regulation of nucleosome density" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 EMBL:AACD01000017
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
KO:K11367 HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB RefSeq:XP_658859.1
ProteinModelPortal:Q5BDX5 STRING:Q5BDX5
EnsemblFungi:CADANIAT00001368 GeneID:2877029 KEGG:ani:AN1255.2
OMA:GPRRMAI Uniprot:Q5BDX5
Length = 1517
Score = 429 (156.1 bits), Expect = 1.8e-51, Sum P(2) = 1.8e-51
Identities = 147/476 (30%), Positives = 232/476 (48%)
Query: 141 NADDDW-LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 199
N D D L +E + L + + PFMLRR VE LPPK ++R +S +Q Y
Sbjct: 632 NVDADMDLNSEAASEKLAELTKAISPFMLRRTKTKVESDLPPKTEKIIRVELSDVQLEYY 691
Query: 200 DWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF----- 254
K T +E + QK ++L N MEL+K NHP + +P
Sbjct: 692 ---KNILTKNYAALNEGTKGQK---------QSLLNIMMELKKASNHPFM-FPSAETKIL 738
Query: 255 --SDLSKDFL---VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 309
S +D L + S GK+ +LD++L KL+R GHRVL+FS M K+LDIL +Y+++R
Sbjct: 739 EGSTRREDVLRALITSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDILGDYMEYRGYT 798
Query: 310 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 369
Y+R+DGT R AI +N+ DS F F+LS RA G G+NL +ADTVI++D D NP+
Sbjct: 799 YQRLDGTIPSASRRLAIEHYNAPDSSDFAFILSTRAGGLGINLMTADTVILFDSDWNPQA 858
Query: 370 EEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAG-KDRYIGS 428
+ QA+ARAHRIGQ + V V Y D + E R+ ++ G D+
Sbjct: 859 DLQAMARAHRIGQTKPVSV-YRLVSKDTVEEEVIE-RARNKLLLEFITIQRGVTDKEASE 916
Query: 429 IEG-LIRNNIQQYKIDMADEVINA-GRFDQRTTHEE-RRMTLETLLHDEERYQETVHDVP 485
I+ + R I + + D++ R QR + + LE L D +H
Sbjct: 917 IQNKMARGGITLGEPNSTDDISRILKRRGQRMFEQTGNQAKLEQLDIDSVLANAELHQTE 976
Query: 486 SLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKW----LRASTKEV--NATIA 539
+ + E+ ++ FD +D + ++++T D +PK ++A K+ +A
Sbjct: 977 QAEGIQA--DGGEEFLKAFDYVDIK---VDDLTWDDIIPKEQLEEIKAEEKKKADEKYLA 1031
Query: 540 NL--SKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASS 593
++ +P K I+ G D + ERK + + + ++D+ G+ SE ++
Sbjct: 1032 DVIEQNRPRKRIVAG-----DERDTRAERKAKRQARVQVS---MNDDDGDDSEPNA 1079
Score = 201 (75.8 bits), Expect = 1.8e-51, Sum P(2) = 1.8e-51
Identities = 41/109 (37%), Positives = 64/109 (58%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAA------LKFNVLVTTYEFIMYDR 54
M W W P ++ + Y G + R+ L E+ KFNVL+TTYE+++ D
Sbjct: 507 MPSWAETFDNWSPDLNYVVYNGNEASRNVLKEYELMVDGNPRRPKFNVLLTTYEYVLVDS 566
Query: 55 SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQND 103
S LS+ +W+++ +DEA R+K+R+S L L + RLL+TGTP+QN+
Sbjct: 567 SFLSQFNWQFMAVDEAHRLKNRDSQLYIKLQEFNSPARLLITGTPIQNN 615
Score = 54 (24.1 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 443 DMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVE 502
D +EVI R +R + E E +E V + +L+ +++ + E +
Sbjct: 1107 DREEEVIREARLTERDRDTVKSALREITDKAAELVREDVARLEALENAGKVLTKKERKAV 1166
Query: 503 LFD 505
LFD
Sbjct: 1167 LFD 1169
Score = 39 (18.8 bits), Expect = 5.0e-10, Sum P(2) = 5.0e-10
Identities = 15/69 (21%), Positives = 28/69 (40%)
Query: 370 EEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDR--YIG 427
EE+ + A + R+ + + DK + +ED R + L K+R +
Sbjct: 1109 EEEVIREARLTERDRDTVKSALREITDKAAELVREDVARLEALENAGKVLTKKERKAVLF 1168
Query: 428 SIEGLIRNN 436
+ G+ R N
Sbjct: 1169 DLHGVKRLN 1177
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 334 (122.6 bits), Expect = 1.9e-50, Sum P(2) = 1.9e-50
Identities = 73/209 (34%), Positives = 110/209 (52%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
M W+ EL +W PS + Y GA+ +R F+V +T+Y+ ++ D +
Sbjct: 679 MLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVLQDHQAFRRK 738
Query: 61 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFD 120
+W+Y+I+DEAQ +K+ +S + L + QRRLLLTGTPLQN P VF
Sbjct: 739 NWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQ 798
Query: 121 NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP 180
+ + F +WFS P G + + + E ++ RLH++L PF+LRR DVE +P
Sbjct: 799 SHREFKEWFSNPLT--GMIEGSQE-YNEG-----LVKRLHKVLRPFLLRRVKVDVEKQMP 850
Query: 181 PKVSIVLRCRMSAIQSAIYDWIKATGTLR 209
K V+RCR+S Q +YD A T +
Sbjct: 851 KKYEHVIRCRLSKRQRCLYDDFMAQTTTK 879
Score = 297 (109.6 bits), Expect = 1.9e-50, Sum P(2) = 1.9e-50
Identities = 67/165 (40%), Positives = 103/165 (62%)
Query: 254 FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRI 313
F DL + CGKL L +L +L+ GHRVL+F+ MT++LD+LE++L + +Y R+
Sbjct: 2032 FPDLR--LIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRL 2089
Query: 314 DGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQA 373
DG+T +E R++ + FN+ D F F+LS R+ G G+NL ADTV+ YD D NP + QA
Sbjct: 2090 DGSTRVEQRQALMERFNA-DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQA 2148
Query: 374 VARAHRIGQKREVKV--IYMEAVVDKISSHQKEDELRSGGTVDLE 416
R HRIGQ R+V + + E V++ + +K ++ R G + +E
Sbjct: 2149 QDRCHRIGQTRDVHIYRLISERTVEE-NILKKANQKRMLGDMAIE 2192
Score = 137 (53.3 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 36/98 (36%), Positives = 50/98 (51%)
Query: 155 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 214
++ RLH++L PF+LRR DVE +P K V+RCR+S Q +YD A T
Sbjct: 825 LVKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTT------ 878
Query: 215 EKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 252
K + + ++ N M+LRK CNHP L P
Sbjct: 879 ------KETLATGH-FMSVINILMQLRKVCNHPNLFDP 909
Score = 43 (20.2 bits), Expect = 4.2e-22, Sum P(3) = 4.2e-22
Identities = 15/68 (22%), Positives = 38/68 (55%)
Query: 877 VIQRRCKNV--ISKLQRRIEKEGHQIVPLLTDLWKRIET-SGYVSGAGNNILDL---RKI 930
+IQ C + ++ L R+++ EGH+++ + T + + ++ +++ G+ L L ++
Sbjct: 2037 LIQYDCGKLQTLAVLLRQLKAEGHRVL-IFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRV 2095
Query: 931 DQRVDRLE 938
+QR +E
Sbjct: 2096 EQRQALME 2103
Score = 37 (18.1 bits), Expect = 4.2e-22, Sum P(3) = 4.2e-22
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 362 DPDPNPKNEEQAVARAHRIGQKREVKVI 389
DP P PK + V R + K+E + +
Sbjct: 982 DPPPRPKPVKMKVNRMLQPVPKQEGRTV 1009
>SGD|S000000966 [details] [associations]
symbol:CHD1 "Chromatin remodeler that regulates various
aspects of transcription" species:4932 "Saccharomyces cerevisiae"
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0042766
"nucleosome mobilization" evidence=IDA] [GO:0000182 "rDNA binding"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IDA] [GO:0000124 "SAGA complex" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IGI;IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IDA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IMP]
[GO:0071441 "negative regulation of histone H3-K14 acetylation"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI;IPI] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0031490 "chromatin DNA binding"
evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IDA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=IGI;IMP] [GO:0071894 "histone H2B conserved C-terminal
lysine ubiquitination" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0035064 "methylated histone residue binding" evidence=IDA]
[GO:2000104 "negative regulation of DNA-dependent DNA replication"
evidence=IGI] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SGD:S000000966 Pfam:PF00385 GO:GO:0005739
GO:GO:0005524 GO:GO:2000104 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:BK006939 GO:GO:0000124 GO:GO:0046695 GO:GO:0004386
GO:GO:0034401 GO:GO:0006368 GO:GO:0035064 GO:GO:0031490
GO:GO:0042766 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
GO:GO:0016584 EMBL:U18917 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GO:GO:0006363 GO:GO:0008094 GO:GO:0006369
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 PIR:S30818 RefSeq:NP_011091.1
PDB:2DY7 PDB:2DY8 PDB:2H1E PDB:2XB0 PDB:3MWY PDB:3TED PDBsum:2DY7
PDBsum:2DY8 PDBsum:2H1E PDBsum:2XB0 PDBsum:3MWY PDBsum:3TED
ProteinModelPortal:P32657 SMR:P32657 DIP:DIP-6362N IntAct:P32657
MINT:MINT-618890 STRING:P32657 PaxDb:P32657 PeptideAtlas:P32657
EnsemblFungi:YER164W GeneID:856911 KEGG:sce:YER164W CYGD:YER164w
OMA:IKWQFMA OrthoDB:EOG4TF3TB SABIO-RK:P32657
EvolutionaryTrace:P32657 NextBio:983353 Genevestigator:P32657
GermOnline:YER164W GO:GO:0030874 GO:GO:0000182 GO:GO:0071441
GO:GO:2000616 GO:GO:0001178 Uniprot:P32657
Length = 1468
Score = 402 (146.6 bits), Expect = 2.2e-50, Sum P(3) = 2.2e-50
Identities = 103/254 (40%), Positives = 149/254 (58%)
Query: 148 ETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGT 207
+ E++ IH LH+ ++PF+LRR +DVE SLP K +LR +S +Q+ Y I T
Sbjct: 575 QDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNI-LTKN 633
Query: 208 LRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL--N-----YPYFSD--LS 258
K + +L N EL+K NHP L N F D ++
Sbjct: 634 YSALTAGAKGG-----------HFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMT 682
Query: 259 KDF----LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRID 314
++ L+ S GK+ +LD++L +L++ GHRVL+FS M ++LDIL +YL + + ++R+D
Sbjct: 683 RENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLD 742
Query: 315 GTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAV 374
GT R +I FNS DS+ F+FLLS RA G G+NL +ADTV+I+D D NP+ + QA+
Sbjct: 743 GTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAM 802
Query: 375 ARAHRIGQKREVKV 388
ARAHRIGQK V V
Sbjct: 803 ARAHRIGQKNHVMV 816
Score = 227 (85.0 bits), Expect = 2.2e-50, Sum P(3) = 2.2e-50
Identities = 43/112 (38%), Positives = 67/112 (59%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV---------AALKFNVLVTTYEFIM 51
M W KW P ++CI Y+G + R + E +KFNVL+TTYE+I+
Sbjct: 437 MPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYIL 496
Query: 52 YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQND 103
DR++L + W+++ +DEA R+K+ ES L L+ ++ R+L+TGTPLQN+
Sbjct: 497 KDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNN 548
Score = 53 (23.7 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 30/146 (20%), Positives = 69/146 (47%)
Query: 788 QLRTDTEMKAHGESNS-LRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGR---LNCMP 843
+L+ D E ++ LR + S+ ++ +N+ ++ N A K G LN M
Sbjct: 597 RLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTK---NYSALTAGAKGGHFSLLNIM- 652
Query: 844 GHTEDAADH--FKESWDGKIANASGSSNFSAK--MSDVIQRRCKNVI-SKLQRRIEKEGH 898
+ A++H ++ + ++ G + + + +I K V+ +L R++K+GH
Sbjct: 653 NELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGH 712
Query: 899 QIVPLLTDLWKRIETSG-YVSGAGNN 923
+++ + + + + ++ G Y+S G N
Sbjct: 713 RVL-IFSQMVRMLDILGDYLSIKGIN 737
Score = 42 (19.8 bits), Expect = 2.2e-50, Sum P(3) = 2.2e-50
Identities = 18/99 (18%), Positives = 44/99 (44%)
Query: 798 HGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASL-KTGRLNCMPGHTEDAADHFKES 856
H +S + SEP++ PS+++ PK A+L RL+ + +++
Sbjct: 1297 HSKSMTPEITSSEPANGP----PSKRMKALPKGPAALINNTRLSPNSPTPPLKSKVSRDN 1352
Query: 857 WDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEK 895
+ +N S S + + + C++ +S ++ +++
Sbjct: 1353 GTRQSSNPSSGSAHEKEYDSMDEEDCRHTMSAIRTSLKR 1391
Score = 40 (19.1 bits), Expect = 6.5e-13, Sum P(2) = 6.5e-13
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 891 RRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNIL 925
RR++K+ + +P T+ R+E S + NIL
Sbjct: 596 RRLKKDVEKSLPSKTERILRVELSDVQTEYYKNIL 630
Score = 39 (18.8 bits), Expect = 4.5e-50, Sum P(3) = 4.5e-50
Identities = 22/120 (18%), Positives = 47/120 (39%)
Query: 722 SGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQM 781
+G T + +D+ + R+R+ R ++ E R+ L G+ + ++
Sbjct: 979 NGDGTAANSDSDDDST--SRSSRRRA-RANDMDSIGESEVRALYKAILKFGNLKEILDEL 1035
Query: 782 --DNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRL 839
D P + + + + E D K+R+ + + +A RA LK+G +
Sbjct: 1036 IADGTLPVK-SFEKYGETYDEMMEAAKDCVHEEEKNRKEILEKLEKHATAYRAKLKSGEI 1094
>POMBASE|SPAC3G6.01 [details] [associations]
symbol:hrp3 "ATP-dependent DNA helicase Hrp3"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0000790 "nuclear
chromatin" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IMP]
[GO:0031934 "mating-type region heterochromatin" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEP] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] [GO:0030702 "chromatin silencing
at centromere" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
PomBase:SPAC3G6.01 Pfam:PF00385 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0006338 GO:GO:0030466 GO:GO:0000790 GO:GO:0000070
GO:GO:0004003 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
OrthoDB:EOG4TF3TB GO:GO:0060303 PIR:T38720 RefSeq:NP_594967.1
ProteinModelPortal:O14139 MINT:MINT-4670837 STRING:O14139
EnsemblFungi:SPAC3G6.01.1 GeneID:2543064 KEGG:spo:SPAC3G6.01
OMA:HINGSST NextBio:20804092 Uniprot:O14139
Length = 1388
Score = 394 (143.8 bits), Expect = 3.7e-50, Sum P(3) = 3.7e-50
Identities = 102/251 (40%), Positives = 146/251 (58%)
Query: 150 EKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLR 209
E++ I L + L+P++LRR +DVE SLP K +LR +S +Q +Y W K T
Sbjct: 572 EEQEAYIRSLQEHLQPYILRRLKKDVEKSLPSKSERILRVELSDLQ--MY-WYKNILT-- 626
Query: 210 VDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL----NYPYFSDLS----KDF 261
RV I LN +EL+K NHP L + ++ +D
Sbjct: 627 -----RNYRVLTQSISSGSQISLLNI-VVELKKASNHPYLFDGVEESWMQKINSQGRRDE 680
Query: 262 LVK----SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 317
++K + GK+ +LD++L +L+R GHRVL+FS M ++LDIL +YL R ++R+DGT
Sbjct: 681 VLKGLIMNSGKMVLLDKLLSRLRRDGHRVLIFSQMVRMLDILGDYLSLRGYPHQRLDGTV 740
Query: 318 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA 377
R ++I FN+ +S F+FLLS RA G G+NL +ADTVII+D D NP+ + QA+ARA
Sbjct: 741 PAAVRRTSIDHFNAPNSPDFVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARA 800
Query: 378 HRIGQKREVKV 388
HRIGQK V V
Sbjct: 801 HRIGQKNHVMV 811
Score = 231 (86.4 bits), Expect = 3.7e-50, Sum P(3) = 3.7e-50
Identities = 48/125 (38%), Positives = 70/125 (56%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRSKLS 58
WQ L W ++CI Y+G R + E +KFN+L+TTYE+++ DRS LS
Sbjct: 439 WQETLALWASDMNCISYLGNTTSRQVIRDYEFYVDGTQKIKFNLLLTTYEYVLKDRSVLS 498
Query: 59 KVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 118
+ W+Y+ IDEA R+K+ ES L L +++ RLL+TGTPLQN+ P
Sbjct: 499 NIKWQYMAIDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGK 558
Query: 119 FDNRK 123
F+ R+
Sbjct: 559 FEIRE 563
Score = 60 (26.2 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 851 DHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVI-SKLQRRIEKEGHQIVPLLTDLWK 909
D +ESW KI N+ G + K +I K V+ KL R+ ++GH+++ + + + +
Sbjct: 662 DGVEESWMQKI-NSQGRRDEVLK--GLIMNSGKMVLLDKLLSRLRRDGHRVL-IFSQMVR 717
Query: 910 RIETSG-YVSGAG 921
++ G Y+S G
Sbjct: 718 MLDILGDYLSLRG 730
Score = 43 (20.2 bits), Expect = 3.7e-50, Sum P(3) = 3.7e-50
Identities = 22/100 (22%), Positives = 41/100 (41%)
Query: 721 QSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPE-ERSCTDTPLHRGDSSLLPF 779
+S S++ + +Q+L+ ++ ++ IR+ R + E D + D +
Sbjct: 973 ESPSYSGTSERKSKKQMLKDEVLLEKEIRLLYRAMIRYGSLEHRYNDIVKY-ADLTTQDA 1031
Query: 780 QMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNL 819
+ K A L T + L +DQS S SR+ L
Sbjct: 1032 HVIKKIAADLVTASRKAVSAAEKDLSNDQSNNKS-SRKAL 1070
>CGD|CAL0000801 [details] [associations]
symbol:orf19.1720 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 320 (117.7 bits), Expect = 5.0e-50, Sum P(2) = 5.0e-50
Identities = 73/210 (34%), Positives = 116/210 (55%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSR--LFSQEVAALKFNVLVTTYEFIMYDRSKLS 58
+S W +E+ K+ P + Y+G K +R+ L Q+ N+++T+YE + D +KL
Sbjct: 235 LSNWYNEIRKFAPKIKVTKYIGTKQERNDIDLLQQQETT---NIILTSYEISIRDFNKLV 291
Query: 59 KVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 118
K++WKY+I+DE R+K+ + +L + L + RLLLTGTPLQN+ P++
Sbjct: 292 KINWKYLIVDEGHRLKNSQCLLIKILKKLNVSNRLLLTGTPLQNNLNELWSLLNFILPDI 351
Query: 119 FDNRKAFHDWFS--QPFQKEGP---THNADDDWLETEKKVII----IHRLHQILEPFMLR 169
F + + F WF+ + + G T+N +D+ + K+ I I LH IL+PFMLR
Sbjct: 352 FHDLELFQQWFNFDELTELAGELEGTNNEEDEETKNLIKLNIQETLIKNLHTILKPFMLR 411
Query: 170 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 199
R DV +LPPK +L M+ +Q IY
Sbjct: 412 RLKRDVIKNLPPKKEYLLHIPMTKLQKKIY 441
Score = 292 (107.8 bits), Expect = 5.0e-50, Sum P(2) = 5.0e-50
Identities = 69/184 (37%), Positives = 113/184 (61%)
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIK 278
+ ++ + +AK K N + ++LR CN P + Y Y L + ++++ K +L+++L
Sbjct: 564 IYQDILKEAKHLKLQNLKMIQLRNICNSPFIYYNY-PILDQAEVIRNSAKFQVLNQLLPP 622
Query: 279 LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYR---RIDGTTSLEDRESAIVDFNSHDSD 335
L +GH+VL+F+ TK+LD+LE++L+ L + R+DG+T+ + R+ I FN++
Sbjct: 623 LLSSGHKVLIFAQFTKVLDLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFNNNPK- 681
Query: 336 CF-IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAV 394
F +FL S RA G G+NL +ADTVI+ D D NP+ + QA+ R HRIGQ VK I+ +
Sbjct: 682 -FKVFLSSTRAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINPVK-IFRFVI 739
Query: 395 VDKI 398
D I
Sbjct: 740 KDSI 743
Score = 38 (18.4 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 24/100 (24%), Positives = 43/100 (43%)
Query: 859 GKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVS 918
GKI GS+N + + Q N K+ + G + L+ +T +
Sbjct: 655 GKICRLDGSTNHQIRDEQISQFN-NNPKFKVFLSSTRAGGLGINLVA-----ADTVILMD 708
Query: 919 GAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 958
N +DL+ ID RV R+ G + V +F++K +++
Sbjct: 709 NDWNPQMDLQAID-RVHRI---GQINPVKIFRFVIKDSIE 744
>UNIPROTKB|Q5AJ72 [details] [associations]
symbol:CaO19.1720 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 320 (117.7 bits), Expect = 5.0e-50, Sum P(2) = 5.0e-50
Identities = 73/210 (34%), Positives = 116/210 (55%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSR--LFSQEVAALKFNVLVTTYEFIMYDRSKLS 58
+S W +E+ K+ P + Y+G K +R+ L Q+ N+++T+YE + D +KL
Sbjct: 235 LSNWYNEIRKFAPKIKVTKYIGTKQERNDIDLLQQQETT---NIILTSYEISIRDFNKLV 291
Query: 59 KVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 118
K++WKY+I+DE R+K+ + +L + L + RLLLTGTPLQN+ P++
Sbjct: 292 KINWKYLIVDEGHRLKNSQCLLIKILKKLNVSNRLLLTGTPLQNNLNELWSLLNFILPDI 351
Query: 119 FDNRKAFHDWFS--QPFQKEGP---THNADDDWLETEKKVII----IHRLHQILEPFMLR 169
F + + F WF+ + + G T+N +D+ + K+ I I LH IL+PFMLR
Sbjct: 352 FHDLELFQQWFNFDELTELAGELEGTNNEEDEETKNLIKLNIQETLIKNLHTILKPFMLR 411
Query: 170 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 199
R DV +LPPK +L M+ +Q IY
Sbjct: 412 RLKRDVIKNLPPKKEYLLHIPMTKLQKKIY 441
Score = 292 (107.8 bits), Expect = 5.0e-50, Sum P(2) = 5.0e-50
Identities = 69/184 (37%), Positives = 113/184 (61%)
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIK 278
+ ++ + +AK K N + ++LR CN P + Y Y L + ++++ K +L+++L
Sbjct: 564 IYQDILKEAKHLKLQNLKMIQLRNICNSPFIYYNY-PILDQAEVIRNSAKFQVLNQLLPP 622
Query: 279 LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYR---RIDGTTSLEDRESAIVDFNSHDSD 335
L +GH+VL+F+ TK+LD+LE++L+ L + R+DG+T+ + R+ I FN++
Sbjct: 623 LLSSGHKVLIFAQFTKVLDLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFNNNPK- 681
Query: 336 CF-IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAV 394
F +FL S RA G G+NL +ADTVI+ D D NP+ + QA+ R HRIGQ VK I+ +
Sbjct: 682 -FKVFLSSTRAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINPVK-IFRFVI 739
Query: 395 VDKI 398
D I
Sbjct: 740 KDSI 743
Score = 38 (18.4 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 24/100 (24%), Positives = 43/100 (43%)
Query: 859 GKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVS 918
GKI GS+N + + Q N K+ + G + L+ +T +
Sbjct: 655 GKICRLDGSTNHQIRDEQISQFN-NNPKFKVFLSSTRAGGLGINLVA-----ADTVILMD 708
Query: 919 GAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 958
N +DL+ ID RV R+ G + V +F++K +++
Sbjct: 709 NDWNPQMDLQAID-RVHRI---GQINPVKIFRFVIKDSIE 744
>CGD|CAL0001390 [details] [associations]
symbol:orf19.3035 species:5476 "Candida albicans" [GO:0000124
"SAGA complex" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0030874 "nucleolar chromatin" evidence=IEA] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IEA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IEA] [GO:0071441 "negative regulation of histone H3-K14
acetylation" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IEA] [GO:0060303 "regulation
of nucleosome density" evidence=IEA] [GO:0006200 "ATP catabolic
process" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:2000104 "negative regulation of
DNA-dependent DNA replication" evidence=IEA] [GO:0042766
"nucleosome mobilization" evidence=IEA] [GO:0001178 "regulation of
transcriptional start site selection at RNA polymerase II promoter"
evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IEA] [GO:0000182 "rDNA
binding" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 CGD:CAL0001390
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907 KO:K11367
RefSeq:XP_721262.1 RefSeq:XP_721533.1 ProteinModelPortal:Q5AI17
STRING:Q5AI17 GeneID:3636889 GeneID:3637077 KEGG:cal:CaO19.10553
KEGG:cal:CaO19.3035 Uniprot:Q5AI17
Length = 1410
Score = 378 (138.1 bits), Expect = 6.4e-50, Sum P(2) = 6.4e-50
Identities = 143/465 (30%), Positives = 224/465 (48%)
Query: 143 DDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 202
D + +++E++ I L + + PF+LRR +DVE SLP K +LR +S IQ+ Y I
Sbjct: 552 DFETIDSEQEQYI-KDLQKKISPFILRRLKKDVEKSLPSKSERILRVELSDIQTEYYKNI 610
Query: 203 KATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL------------N 250
++ + ++ +L N EL+K NHP L
Sbjct: 611 ITKNYAALNAGNRGSQI------------SLLNIMSELKKASNHPYLFDGAEDKVLDKAG 658
Query: 251 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVY 310
P + K +V S GK+ +L+++L +L++ GHRVL+FS M ++LDIL +Y+ + +
Sbjct: 659 SPSRENTLKG-IVMSSGKMVLLEQLLSRLRKEGHRVLIFSQMVRMLDILGDYMFIKGYQF 717
Query: 311 RRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNE 370
+R+DGT R+ AI FN+ S F FLLS RA G G+NL +ADTVII+D D NP+ +
Sbjct: 718 QRLDGTVPSSKRKIAIDHFNAPGSKDFAFLLSTRAGGLGINLMTADTVIIFDSDWNPQAD 777
Query: 371 EQAVARAHRIGQKREVKV---IYMEAVVDKISSHQKEDELRSGGTVDLE-DDLAGKDRYI 426
QA+ARAHRIGQK V V + + V ++I ++ + + L D + K+
Sbjct: 778 LQAMARAHRIGQKNHVSVYRFVSKDTVEEQILERARKKMVLEYAIISLGITDPSAKN--- 834
Query: 427 GSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETL-LHDEERYQETVHDVP 485
GS N + Q AG + ++++ LE L L D + E P
Sbjct: 835 GSKTEPSTNELSQIL------KFGAGTMFKENNNQQK---LENLNLDDVLSHAEDHVTTP 885
Query: 486 SLQEVNRMIARSEDEVELFD-QMDEEFGWI---EEMTRYDQVPKWLRASTKEVNATIANL 541
L E N + E+ D + D E+ I EE+T+ K +A + + IA
Sbjct: 886 ELGESNLGSEEFLKQFEVTDYKADVEWDDIIPQEELTKLKDEEK-RKADEQYLQDQIAMY 944
Query: 542 SKKPSKNILF--GSNIGVD---SGEIETERKRGPKGKKYPNYKEV 581
S++ + F GS++ D SGE +R G + KE+
Sbjct: 945 SRRKAAVRKFENGSSVPSDVEDSGEDSRPLRRRNAGDHQLSEKEI 989
Score = 238 (88.8 bits), Expect = 6.4e-50, Sum P(2) = 6.4e-50
Identities = 44/104 (42%), Positives = 66/104 (63%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV----AALKFNVLVTTYEFIMYDRSKLSK 59
WQ KW P V+C+YY+G + R + E+ KFNVL+TTYE+I+ D+++L
Sbjct: 426 WQETFEKWAPDVNCVYYLGNGEARKTIREYELYNQNRKPKFNVLLTTYEYILKDKNELGA 485
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQND 103
W+++ +DEA R+K+ ES L L ++ RLL+TGTPLQN+
Sbjct: 486 FKWQFLAVDEAHRLKNAESSLYEALKGFKVSNRLLITGTPLQNN 529
Score = 74 (31.1 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 28/133 (21%), Positives = 63/133 (47%)
Query: 788 QLRTDTEMKAHGESNS-LRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHT 846
+L+ D E +S LR + S+ ++ +N+ ++ A + LN M
Sbjct: 578 RLKKDVEKSLPSKSERILRVELSDIQTEYYKNIITKNYAALNAGNRGSQISLLNIM-SEL 636
Query: 847 EDAADHFKESWDG---KIANASGSSNFSAKMSDVIQRRCKNVI-SKLQRRIEKEGHQIVP 902
+ A++H +DG K+ + +GS + + ++ K V+ +L R+ KEGH+++
Sbjct: 637 KKASNH-PYLFDGAEDKVLDKAGSPSRENTLKGIVMSSGKMVLLEQLLSRLRKEGHRVL- 694
Query: 903 LLTDLWKRIETSG 915
+ + + + ++ G
Sbjct: 695 IFSQMVRMLDILG 707
Score = 46 (21.3 bits), Expect = 9.1e-30, Sum P(2) = 9.1e-30
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 1 MSMWQSELH-KWLPSVSCIYYVGAKDQRSRLFSQEV 35
++ +Q L+ K LPS+S Y + + + +LF Q V
Sbjct: 320 VTKYQQRLNSKILPSLSANYPLSQRPRFEKLFKQPV 355
Score = 39 (18.8 bits), Expect = 5.0e-14, Sum P(2) = 5.0e-14
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 808 QSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADH 852
Q + + SRR RK N + ++ + P +A DH
Sbjct: 938 QDQIAMYSRRKAAVRKFENGSSVPSDVEDSGEDSRPLRRRNAGDH 982
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 311 (114.5 bits), Expect = 9.1e-50, Sum P(2) = 9.1e-50
Identities = 71/174 (40%), Positives = 107/174 (61%)
Query: 261 FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 320
F+ S GKL LD++L++L+ HRVL++ MT+++D++EEYL +RQ Y R+DG++ +
Sbjct: 1424 FIADS-GKLSKLDKLLVELKANDHRVLIYFQMTRMIDLMEEYLTFRQYKYLRLDGSSKIS 1482
Query: 321 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 380
R + ++ + + F+FLLS RA G G+NL +ADTVI YD D NP + QA+ RAHRI
Sbjct: 1483 QRRDMVTEWQTRP-ELFVFLLSTRAGGLGINLTAADTVIFYDSDWNPSIDSQAMDRAHRI 1541
Query: 381 GQKREVKV---IYMEAVVDKISSHQKEDE-----LRSGGTV--DLEDDLAGKDR 424
GQ+++V V I + ++I KE E + SGG + DL G R
Sbjct: 1542 GQQKQVTVYRFITRGTIEERIVIRAKEKEEVQKVVISGGETRPTKQMDLKGNSR 1595
Score = 307 (113.1 bits), Expect = 9.1e-50, Sum P(2) = 9.1e-50
Identities = 73/251 (29%), Positives = 129/251 (51%)
Query: 4 WQSELHKWLPSVSCIYYVGA-KDQR--SRLFSQEVAALK----FNVLVTTYEFIMYDRSK 56
WQ E+ +++P + CI Y G+ KD++ + + ++ F+V+VT+Y+ ++ D
Sbjct: 906 WQQEITRFVPKLKCIPYWGSTKDRKILRKFWCRKNMTYDENSPFHVVVTSYQLVVLDAQY 965
Query: 57 LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXP 116
V W+Y+I+DEAQ +K S + L ++C+ RLLLTGTP+QN P
Sbjct: 966 FQSVKWQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGTPIQNTMQELWALLHFIMP 1025
Query: 117 EVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVE 176
+FD+ F +WFS+ + +H + L ++ + RLH IL+PFMLRR ++V+
Sbjct: 1026 SLFDSHNEFSEWFSKDIE----SHAQSNTQLNEQQ----LKRLHMILKPFMLRRVKKNVQ 1077
Query: 177 GSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNR 236
L K+ + C ++ Q +Y ++ ++ ++K + ++ N
Sbjct: 1078 SELGEKIEKEVYCDLTQRQKILYQALRRQISIA-------ELLEKAILGGDDTVASIMNL 1130
Query: 237 CMELRKTCNHP 247
M+ RK CNHP
Sbjct: 1131 VMQFRKVCNHP 1141
Score = 40 (19.1 bits), Expect = 9.0e-22, Sum P(2) = 9.0e-22
Identities = 12/66 (18%), Positives = 31/66 (46%)
Query: 193 AIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 252
A++ AI + + A ++ ++EK++ ++ Q ++ + ++ E+ + N
Sbjct: 385 AVRQAIREEVAAVEAAKIRADEEKKKKEREE--QVRLLQESADKDAEMNEASTATSENED 442
Query: 253 YFSDLS 258
DLS
Sbjct: 443 LKDDLS 448
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 334 (122.6 bits), Expect = 1.0e-49, Sum P(3) = 1.0e-49
Identities = 73/209 (34%), Positives = 110/209 (52%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
M W+ EL +W PS + Y GA+ +R F+V +T+Y+ ++ D +
Sbjct: 687 MLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVLQDHQAFRRK 746
Query: 61 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFD 120
+W+Y+I+DEAQ +K+ +S + L + QRRLLLTGTPLQN P VF
Sbjct: 747 NWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQ 806
Query: 121 NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP 180
+ + F +WFS P G + + + E ++ RLH++L PF+LRR DVE +P
Sbjct: 807 SHREFKEWFSNPLT--GMIEGSQE-YNEG-----LVKRLHKVLRPFLLRRVKVDVEKQMP 858
Query: 181 PKVSIVLRCRMSAIQSAIYDWIKATGTLR 209
K V+RCR+S Q +YD A T +
Sbjct: 859 KKYEHVIRCRLSKRQRCLYDDFMAQTTTK 887
Score = 297 (109.6 bits), Expect = 1.0e-49, Sum P(3) = 1.0e-49
Identities = 67/165 (40%), Positives = 103/165 (62%)
Query: 254 FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRI 313
F DL + CGKL L +L +L+ GHRVL+F+ MT++LD+LE++L + +Y R+
Sbjct: 2043 FPDLR--LIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRL 2100
Query: 314 DGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQA 373
DG+T +E R++ + FN+ D F F+LS R+ G G+NL ADTV+ YD D NP + QA
Sbjct: 2101 DGSTRVEQRQALMERFNA-DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQA 2159
Query: 374 VARAHRIGQKREVKV--IYMEAVVDKISSHQKEDELRSGGTVDLE 416
R HRIGQ R+V + + E V++ + +K ++ R G + +E
Sbjct: 2160 QDRCHRIGQTRDVHIYRLISERTVEE-NILKKANQKRMLGDMAIE 2203
Score = 137 (53.3 bits), Expect = 4.2e-29, Sum P(3) = 4.2e-29
Identities = 36/98 (36%), Positives = 50/98 (51%)
Query: 155 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 214
++ RLH++L PF+LRR DVE +P K V+RCR+S Q +YD A T
Sbjct: 833 LVKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTT------ 886
Query: 215 EKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 252
K + + ++ N M+LRK CNHP L P
Sbjct: 887 ------KETLATGH-FMSVINILMQLRKVCNHPNLFDP 917
Score = 49 (22.3 bits), Expect = 1.0e-49, Sum P(3) = 1.0e-49
Identities = 21/94 (22%), Positives = 33/94 (35%)
Query: 759 PEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQ---SEPSSKS 815
PE T P S LP + A+ R + + G S + + P+ K
Sbjct: 2810 PESSPPTSGPCEVASPSTLPTPTQQPFIARRRIELGLTGGGSSENGEGALLAITPPAVKR 2869
Query: 816 RRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDA 849
RR P +K + + + L+ G T A
Sbjct: 2870 RRGRPPKKNRSPADAGRGVDEAPLSTSKGKTNGA 2903
Score = 43 (20.2 bits), Expect = 4.3e-22, Sum P(3) = 4.3e-22
Identities = 15/68 (22%), Positives = 38/68 (55%)
Query: 877 VIQRRCKNV--ISKLQRRIEKEGHQIVPLLTDLWKRIET-SGYVSGAGNNILDL---RKI 930
+IQ C + ++ L R+++ EGH+++ + T + + ++ +++ G+ L L ++
Sbjct: 2048 LIQYDCGKLQTLAVLLRQLKAEGHRVL-IFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRV 2106
Query: 931 DQRVDRLE 938
+QR +E
Sbjct: 2107 EQRQALME 2114
Score = 39 (18.8 bits), Expect = 1.1e-48, Sum P(3) = 1.1e-48
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 722 SGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEE--RSCTDTPL 769
+G + + EG + P +KR+R RP P + R + PL
Sbjct: 2847 TGGGSSENGEGALLAITPPAVKRRRG---RPPKKNRSPADAGRGVDEAPL 2893
Score = 37 (18.1 bits), Expect = 1.0e-22, Sum P(3) = 1.0e-22
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 362 DPDPNPKNEEQAVARAHRIGQKREVKVI 389
DP P PK + V R + K+E + +
Sbjct: 990 DPPPRPKPVKMKVNRMLQPVPKQEGRTV 1017
Score = 37 (18.1 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 995 SALSFTGPLSTSVSTPSPR 1013
+A SF+GP P PR
Sbjct: 1874 TATSFSGPRPRRQPPPPPR 1892
>TAIR|locus:2054955 [details] [associations]
symbol:ASG3 "ALTERED SEED GERMINATION 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002685
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 IPI:IPI00520375 RefSeq:NP_973689.2 UniGene:At.47803
ProteinModelPortal:F4IV45 SMR:F4IV45 PRIDE:F4IV45
EnsemblPlants:AT2G44980.2 GeneID:819106 KEGG:ath:AT2G44980
OMA:WALMHFC PhylomeDB:F4IV45 ArrayExpress:F4IV45 Uniprot:F4IV45
Length = 877
Score = 547 (197.6 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 189/630 (30%), Positives = 308/630 (48%)
Query: 4 WQSELHKWLPSVSCIYYVGAK----DQRSRLF-----SQEVAALKFNVLVTTYEFIMYDR 54
W SE++++ P++ + YVG K D R ++ S + L F+VL+TTY+ + D+
Sbjct: 116 WVSEINRFTPNLEVLRYVGDKYCRLDMRKSMYDHVKKSSKGHFLPFDVLLTTYDIALVDQ 175
Query: 55 SKLSKVDWKYIIIDEAQRMKDRESVLARDL-DRYRCQRRLLLTGTPLQNDXXXXXXXXXX 113
LS++ W+Y IIDEAQR+K+ SVL L +++ RRLL+TGTP+QN+
Sbjct: 176 DFLSQIPWQYAIIDEAQRLKNPNSVLYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHF 235
Query: 114 XXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR-- 171
P VF D F F++ G + D + +K+ L IL FMLRR
Sbjct: 236 CMPLVFGTL----DQFLSAFKETGDGLSGLD--VSNDKETY--KSLKFILGAFMLRRTKS 287
Query: 172 --VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKV 229
+E LPP + + + ++Q IY T LR ++ ++ +
Sbjct: 288 LLIESGNLVLPPLTELTVMVPLVSLQKKIY-----TSILR---KELPGLLELSS--GGSN 337
Query: 230 YKTLNNRCMELRKTCNHPLLNYPYFSDL---SKDFLVKSCGKLWILDRILIKLQRTGHRV 286
+ +L N ++LRK C+HP L +P + LV++ GKL +LD++L +L +GHRV
Sbjct: 338 HTSLQNIVIQLRKACSHPYL-FPGIEPEPFEEGEHLVQASGKLLVLDQLLKRLHDSGHRV 396
Query: 287 LLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH-----DSD-----C 336
LLFS MT LDIL+++++ R+ Y R+DG+ E+R +AI +F++ DS+
Sbjct: 397 LLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFAAIKNFSAKTERGLDSEVDGSNA 456
Query: 337 FIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM--EAV 394
F+F++S RA G GLNL +ADTVI Y+ D NP+ ++QA+ RAHRIGQ V I + E
Sbjct: 457 FVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQISHVLSINLVTEHS 516
Query: 395 VDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRF 454
V+++ + E +L+ V + D++ K+ G + L V RF
Sbjct: 517 VEEVILRRAERKLQLSHNV-VGDNMEEKEEDGGDLRSL---------------VFGLQRF 560
Query: 455 DQRTTHEERRMTLETLLHDE--ERYQETVHDVPSLQEVNRMIARSEDEV---ELFDQMDE 509
D H E L+ + E+ +V +E R S D + +D
Sbjct: 561 DPEEIHNEESDNLKMVEISSLAEKVVAIRQNVEPDKEERRFEINSSDTLLGNTSSASLDS 620
Query: 510 EFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKR- 568
E ++E + V K A+ + I L + KN+ N+ +++ + E K+
Sbjct: 621 E---LDEASYLSWVEKLKEAARSSKDEKIIELGNR--KNLSEERNLRIEAARKKAEEKKL 675
Query: 569 ---GPKGKKYPNYKE--VDDEIGEYSEASS 593
G G + + +E + D++ S+A S
Sbjct: 676 ATWGAHGYQSLSVEEPILPDDVDSSSDAGS 705
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 552 (199.4 bits), Expect = 1.9e-49, Sum P(2) = 1.9e-49
Identities = 166/481 (34%), Positives = 247/481 (51%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
W+ E + W ++ I Y G+ R + E+ A KF+ L+TT+E I+
Sbjct: 100 WEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILS 158
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
D +L +++W+ +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 159 DCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLH 218
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + F F L+TE++V +L IL+P MLRR
Sbjct: 219 FLEPSQFPSESEFLKDFGD---------------LKTEEQV---QKLQAILKPMMLRRLK 260
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
EDVE +L PK ++ ++ IQ Y R E + K +
Sbjct: 261 EDVEKNLAPKQETIIEVELTNIQKKYY---------RAILEKNFSFLSKGAGHTNM--PN 309
Query: 233 LNNRCMELRKTCNHP-LLN------YPYFSD----LSKDF----LVKSCGKLWILDRILI 277
L N MELRK CNHP L+N F + + DF +V+S GKL ++D++L
Sbjct: 310 LLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLP 369
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
KL+ GH+VL+FS M + LDILE+YL R+ +Y RIDG R++AI F+ DSD F
Sbjct: 370 KLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 429
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y ++ +
Sbjct: 430 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV-YR--LITR 486
Query: 398 ISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGR 453
+S+++E D+ L+ G + ++G+D G+I G IQQ+ ++++ G
Sbjct: 487 -NSYEREMFDKASLKLGLDKAVLQSMSGRD---GNITG-----IQQFSKKEIEDLLRKGA 537
Query: 454 F 454
+
Sbjct: 538 Y 538
Score = 39 (18.8 bits), Expect = 1.9e-49, Sum P(2) = 1.9e-49
Identities = 23/101 (22%), Positives = 45/101 (44%)
Query: 403 KEDELRSGGTVDLEDDLAGK----DRY--IGSIEGL-IRNNIQQYKIDMADEVINAGRFD 455
K+D+L ++ EDD + DR+ G + + ++ Y ++++ GRF
Sbjct: 638 KDDDLVEFSDLESEDDERPRSRRHDRHHAYGRTDCFRVEKHLLVYGWGRWRDILSHGRFK 697
Query: 456 QRTTHEE-----RRMTLETLLH--DEERYQETVHDVPSLQE 489
+R T + R + + LLH +E + + D+ S E
Sbjct: 698 RRMTERDVETICRAILVYCLLHYRGDENIKGFIWDLISPAE 738
Score = 39 (18.8 bits), Expect = 3.6e-49, Sum P(3) = 3.6e-49
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 562 IETERKRGPKGKKYPNYKEVDDEIGEYS--EASSDER 596
I+T R R + + + K DD++ E+S E+ DER
Sbjct: 622 IDTPRVR-KQTRHFSTLK--DDDLVEFSDLESEDDER 655
Score = 38 (18.4 bits), Expect = 3.6e-49, Sum P(3) = 3.6e-49
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 769 LH-RGDSSLLPFQMDNKYPAQLRTDTEMKAH 798
LH RGD ++ F D PA+ E++ H
Sbjct: 718 LHYRGDENIKGFIWDLISPAENGKTKELQNH 748
>TAIR|locus:2116747 [details] [associations]
symbol:PKR2 "PICKLE RELATED 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00523018 RefSeq:NP_194918.2 UniGene:At.54572
ProteinModelPortal:F4JTF6 SMR:F4JTF6 PRIDE:F4JTF6
EnsemblPlants:AT4G31900.1 GeneID:829320 KEGG:ath:AT4G31900
OMA:SYWESES ArrayExpress:F4JTF6 Uniprot:F4JTF6
Length = 1202
Score = 419 (152.6 bits), Expect = 2.4e-49, Sum P(4) = 2.4e-49
Identities = 118/333 (35%), Positives = 186/333 (55%)
Query: 156 IHRLHQILEPFMLRRRVEDV-EGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 214
I RLHQ+L P +LRR +DV + +PPK ++LR MS+ Q +Y KA T
Sbjct: 422 ISRLHQMLAPHLLRRLKKDVLKDKVPPKKELILRVDMSSQQKEVY---KAVITNNYQVLT 478
Query: 215 EKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL--NY-PYFSDLSKDF--LVKSCGKL 269
+KR AK+ +N M+LR+ C+HP L ++ P F D ++ F L+++ GKL
Sbjct: 479 KKR--------DAKI----SNVLMKLRQVCSHPYLLPDFEPRFEDANEAFTKLLEASGKL 526
Query: 270 WILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 329
+LD++++KL+ GHRVL+++ L +LE+Y ++ Y RIDG S +R+ I F
Sbjct: 527 QLLDKMMVKLKEQGHRVLIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQVRIDRF 586
Query: 330 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 389
N+ +S+ F FLLS RA G G+NL +ADTVIIYD D NP + QA+AR HR+GQ +V +I
Sbjct: 587 NAENSNRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQTNKV-MI 645
Query: 390 YMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYI-GSIEGLIRNNIQQYKIDMADEV 448
Y ++ K + ++ E+ + LE + GK ++ +I+ ++ + DE
Sbjct: 646 YR--LIHKGTVEERMMEITKNKML-LEHLVVGKQHLCQDELDDIIKYGSKELFSEENDEA 702
Query: 449 INAGR--FDQRTTHE--ERRMT--LETLLHDEE 475
+G+ +D + +R +E L DEE
Sbjct: 703 GRSGKIHYDDAAIEQLLDRNHVDAVEVSLDDEE 735
Score = 183 (69.5 bits), Expect = 2.4e-49, Sum P(4) = 2.4e-49
Identities = 41/129 (31%), Positives = 65/129 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----AALKFNVLVTTYEFIMYDRSKLS 58
W+ E W P ++ + Y G + R ++ E KF+VL+TTYE + S LS
Sbjct: 287 WEREFATWAPHMNVVMYTGDSEARDVIWEHEFYFSEGRKSKFDVLLTTYEMVHPGISVLS 346
Query: 59 KVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 118
+ W +IIDE R+K+++S L L ++ + +LLTGTPLQN+ +
Sbjct: 347 PIKWTCMIIDEGHRLKNQKSKLYSSLSQFTSKHIVLLTGTPLQNNLNELFALMHFLDADK 406
Query: 119 FDNRKAFHD 127
F + + F D
Sbjct: 407 FGSLEKFQD 415
Score = 51 (23.0 bits), Expect = 2.4e-49, Sum P(4) = 2.4e-49
Identities = 24/104 (23%), Positives = 46/104 (44%)
Query: 500 EVELFDQMDEEFGWIEEMTRYDQVPKWLRAST-KEVNATIANLSKKPSKNILFGSNIGVD 558
EV L D+ + +F ++ ++ V A+ +E A N S + + ++ D
Sbjct: 728 EVSLDDEEETDFLKNFKVASFEYVDDENEAAALEEAQAIENNSSVRNADRTSHWKDLLKD 787
Query: 559 SGEIETERKRGPKGKKYPNYKEV---DDEIGEYSEASSDERNGY 599
E++ + GK+ N K+V +D++ E S DE + Y
Sbjct: 788 KYEVQQAEELSALGKRKRNGKQVMYAEDDLDGLEEIS-DEEDEY 830
Score = 50 (22.7 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 46/238 (19%), Positives = 89/238 (37%)
Query: 222 NPIYQAKVYKTLNNR-CMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWIL-DRILIKL 279
NP+Y K Y +N + L+ +P N F ++ K I D +L+ +
Sbjct: 916 NPLYM-KTYDEINKYGILFLKHIAENPTDNSTNFKVITAMVYADGVPKEGISSDELLVSM 974
Query: 280 QRTGHRVLLFSTMTKLLDILEEYLQWRQLV---YRRIDGTTSLEDRESAIVD-FNSHDSD 335
++L + LD + V Y +G S E+ + ++ + H
Sbjct: 975 TF----MMLVKEKCQFLDNHPTAPVFSNYVISKYNLRNGAFSKEEHDRILIPAVSKHGYG 1030
Query: 336 CFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVV 395
++ ++ G + D I + PD + R+ +K E + Y A
Sbjct: 1031 RWVAIVEDEEIGFQ-EVACKDLNIPFPPDTKSARKRICDHVGKRV-KKMEDAIKYEYA-- 1086
Query: 396 DKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMA---DEVIN 450
+KI + Q + E + VD E ++ D + +Q +++MA D+ +N
Sbjct: 1087 EKILAEQAKAETKGTSFVDAEKEMLKNDPITSKKNSATAVDNKQGRVEMAQSYDQSVN 1144
Score = 48 (22.0 bits), Expect = 2.4e-49, Sum P(4) = 2.4e-49
Identities = 21/74 (28%), Positives = 32/74 (43%)
Query: 733 EDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDT----PLHRGDSSLLPFQMDNKYPAQ 788
E+E+ +P+ R+R +PR TV RP + D PL G+ L N+
Sbjct: 841 EEEEADEPEAARQR----KPR-TVTRPYRKRARDNSEEIPLMEGEGRYLMVLGFNETERD 895
Query: 789 LRTDTEMKAHGESN 802
+ T K +G N
Sbjct: 896 IFLRT-FKRYGAGN 908
Score = 43 (20.2 bits), Expect = 1.6e-09, Sum P(4) = 1.6e-09
Identities = 27/134 (20%), Positives = 59/134 (44%)
Query: 369 NEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGS 428
N+E+ ++R H++ ++ + + + DK+ +KE LR VD+ K+ Y
Sbjct: 417 NKEEQISRLHQMLAPHLLRRLKKDVLKDKVPP-KKELILR----VDMSSQQ--KEVY--- 466
Query: 429 IEGLIRNNIQQYKIDMADEVINA-GRFDQRTTHEERRMTLETLLHD-EERYQETVHDVPS 486
+ +I NN Q ++ N + Q +H E D E + + +
Sbjct: 467 -KAVITNNYQVLTKKRDAKISNVLMKLRQVCSHPYLLPDFEPRFEDANEAFTKLLEASGK 525
Query: 487 LQEVNRMIARSEDE 500
LQ +++M+ + +++
Sbjct: 526 LQLLDKMMVKLKEQ 539
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 322 (118.4 bits), Expect = 2.5e-49, Sum P(3) = 2.5e-49
Identities = 77/209 (36%), Positives = 110/209 (52%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALK-FNVLVTTYEFIMYDRSKLSK 59
M W++E KW P+ + Y G+ +R +L Q L F+V +TTY ++ D +
Sbjct: 597 MLNWETEFLKWCPAFKILTYFGSAKER-KLKRQGWMKLNSFHVCITTYRLVIQDSKMFKR 655
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
WKY+I+DEA +K+ +S + L + +RR+LLTGTPLQND P VF
Sbjct: 656 KKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVF 715
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ + F DWF P G + + K+VI RLH +L PF+LRR DVE L
Sbjct: 716 QSHQEFKDWFCNPIA--GMVEGQE----KINKEVI--DRLHNVLRPFLLRRLKRDVEKQL 767
Query: 180 PPKVSIVLRCRMSAIQSAIY-DWIKATGT 207
P K V+ CR+S Q +Y D+I +T T
Sbjct: 768 PSKHEHVIFCRLSKRQRNLYEDFIASTET 796
Score = 297 (109.6 bits), Expect = 2.5e-49, Sum P(3) = 2.5e-49
Identities = 69/178 (38%), Positives = 104/178 (58%)
Query: 222 NPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR 281
+P Y+ KV L+ +R + YF D + + CGKL L +L KL+
Sbjct: 1035 SPSYKEKVTDLLSPLLSPIRPAI---VRRQVYFPD--RRLIQFDCGKLQELAMLLRKLKF 1089
Query: 282 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLL 341
GHR L+F+ MTK+LD+LE ++ Y R+DG+T E+R++ + FN++ F+F+L
Sbjct: 1090 GGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPK-IFLFIL 1148
Query: 342 SIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV--IYMEAVVDK 397
S R+ G G+NL ADTVI YD D NP ++QA R HRIGQ REV + + E+ +++
Sbjct: 1149 STRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEE 1206
Score = 123 (48.4 bits), Expect = 1.5e-28, Sum P(3) = 1.5e-28
Identities = 36/104 (34%), Positives = 54/104 (51%)
Query: 147 LETEKKVI--IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY-DWIK 203
+E ++K+ +I RLH +L PF+LRR DVE LP K V+ CR+S Q +Y D+I
Sbjct: 733 VEGQEKINKEVIDRLHNVLRPFLLRRLKRDVEKQLPSKHEHVIFCRLSKRQRNLYEDFIA 792
Query: 204 ATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 247
+T T + + + ++ M+LRK CNHP
Sbjct: 793 STET-------------QATLTSGSFFGMISI-IMQLRKVCNHP 822
Score = 51 (23.0 bits), Expect = 2.5e-49, Sum P(3) = 2.5e-49
Identities = 33/172 (19%), Positives = 65/172 (37%)
Query: 435 NNIQQYK------IDMADEVINAGRFDQRTTHEERRMTLETLLHDE--ERYQETVHDVPS 486
++I++YK ID +E + ++D E R +E L + E + + +
Sbjct: 1427 DHIEKYKEEMEAEIDDGEEPLVYEKWDADFATEAYRQQVEVLAQHQLMEDLENEAREREA 1486
Query: 487 LQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKW-LRASTKEVNATIANLSKKP 545
EV M+ + + ++ + +Y + K L A +K V + +
Sbjct: 1487 A-EVAEMVLTQNESAHVLKPKKKKKA---KKAKYKSLKKGSLAAESKHVKSVVKIEDSTD 1542
Query: 546 SKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERN 597
N FG DS + + KGKK + D+E +A +++
Sbjct: 1543 DDNEEFGYVSSSDSDMVTPLSRMHMKGKKRDLIVDTDEEKTSKKKAKKHKKS 1594
Score = 42 (19.8 bits), Expect = 7.0e-23, Sum P(2) = 7.0e-23
Identities = 28/101 (27%), Positives = 42/101 (41%)
Query: 913 TSGYVSGAGNNILDLRKIDQRVDRLEYNGVMEL--VSDVQFMLKGAMQFYGFSHEVRSEA 970
TSG G + I+ LRK+ D E ++ ++ + L + S + S
Sbjct: 801 TSGSFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDMAGIDVQLSSTI----CSLLLESPF 856
Query: 971 RKVHDLFFDLLKIAFPDTDFREARSALSFTGPLSTSVSTPS 1011
KV DL + L F DF S S+ G ++STPS
Sbjct: 857 SKV-DL--EALGFLFTHLDF----SMTSWEGDEIKAISTPS 890
Score = 39 (18.8 bits), Expect = 4.4e-48, Sum P(3) = 4.4e-48
Identities = 28/147 (19%), Positives = 61/147 (41%)
Query: 696 LSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRH- 754
L + + +E E E A + + +S + + + ++ +K K S+ +H
Sbjct: 1473 LMEDLENEAREREAAEVAEMVLTQNESAHVLKPKKKKKAKKAKYKSLK-KGSLAAESKHV 1531
Query: 755 -TVERPEERSCTDTP----LHRGDSSLL-PF-QMDNKYPAQ-LRTDTEMKAHGESNSLRH 806
+V + E+ + D + DS ++ P +M K + L DT+ + + + +H
Sbjct: 1532 KSVVKIEDSTDDDNEEFGYVSSSDSDMVTPLSRMHMKGKKRDLIVDTDEEKTSKKKAKKH 1591
Query: 807 DQSEPSSKSRRNLPSRKIANAPKSRAS 833
+S P+S + S + S+ S
Sbjct: 1592 KKSLPNSDIKYKQTSALLDELEPSKPS 1618
Score = 37 (18.1 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 146 WLETEKKVIIIHRL 159
W++ EK V+ H+L
Sbjct: 117 WMKVEKLVLYKHQL 130
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 334 (122.6 bits), Expect = 2.7e-49, Sum P(3) = 2.7e-49
Identities = 73/209 (34%), Positives = 110/209 (52%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
M W+ EL +W PS + Y GA+ +R F+V +T+Y+ ++ D +
Sbjct: 686 MLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVLQDHQAFRRK 745
Query: 61 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFD 120
+W+Y+I+DEAQ +K+ +S + L + QRRLLLTGTPLQN P VF
Sbjct: 746 NWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQ 805
Query: 121 NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP 180
+ + F +WFS P G + + + E ++ RLH++L PF+LRR DVE +P
Sbjct: 806 SHREFKEWFSNPLT--GMIEGSQE-YNEG-----LVKRLHKVLRPFLLRRVKVDVEKQMP 857
Query: 181 PKVSIVLRCRMSAIQSAIYDWIKATGTLR 209
K V+RCR+S Q +YD A T +
Sbjct: 858 KKYEHVIRCRLSKRQRCLYDDFMAQTTTK 886
Score = 297 (109.6 bits), Expect = 2.7e-49, Sum P(3) = 2.7e-49
Identities = 67/165 (40%), Positives = 103/165 (62%)
Query: 254 FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRI 313
F DL + CGKL L +L +L+ GHRVL+F+ MT++LD+LE++L + +Y R+
Sbjct: 2032 FPDLR--LIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRL 2089
Query: 314 DGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQA 373
DG+T +E R++ + FN+ D F F+LS R+ G G+NL ADTV+ YD D NP + QA
Sbjct: 2090 DGSTRVEQRQALMERFNA-DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQA 2148
Query: 374 VARAHRIGQKREVKV--IYMEAVVDKISSHQKEDELRSGGTVDLE 416
R HRIGQ R+V + + E V++ + +K ++ R G + +E
Sbjct: 2149 QDRCHRIGQTRDVHIYRLISERTVEE-NILKKANQKRMLGDMAIE 2192
Score = 137 (53.3 bits), Expect = 1.1e-28, Sum P(3) = 1.1e-28
Identities = 36/98 (36%), Positives = 50/98 (51%)
Query: 155 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 214
++ RLH++L PF+LRR DVE +P K V+RCR+S Q +YD A T
Sbjct: 832 LVKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTT------ 885
Query: 215 EKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 252
K + + ++ N M+LRK CNHP L P
Sbjct: 886 ------KETLATGH-FMSVINILMQLRKVCNHPNLFDP 916
Score = 45 (20.9 bits), Expect = 2.7e-49, Sum P(3) = 2.7e-49
Identities = 24/103 (23%), Positives = 36/103 (34%)
Query: 755 TVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQ---SEP 811
+V PE T P S LP + A+ R + + G + + P
Sbjct: 2796 SVSGPESSPPTSGPCEAAPPSTLPTPTQQPFIARRRIELGVTGGGSPENGEGALLAITPP 2855
Query: 812 SSKSRRNLPSRK----------IANAPKSRASLKTGRLNCMPG 844
+ K RR P +K + AP S + KT + PG
Sbjct: 2856 AVKRRRGRPPKKNRSPADAGRGVDEAPSSTSKGKTNGADSGPG 2898
Score = 43 (20.2 bits), Expect = 4.2e-22, Sum P(3) = 4.2e-22
Identities = 15/68 (22%), Positives = 38/68 (55%)
Query: 877 VIQRRCKNV--ISKLQRRIEKEGHQIVPLLTDLWKRIET-SGYVSGAGNNILDL---RKI 930
+IQ C + ++ L R+++ EGH+++ + T + + ++ +++ G+ L L ++
Sbjct: 2037 LIQYDCGKLQTLAVLLRQLKAEGHRVL-IFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRV 2095
Query: 931 DQRVDRLE 938
+QR +E
Sbjct: 2096 EQRQALME 2103
Score = 37 (18.1 bits), Expect = 2.6e-22, Sum P(3) = 2.6e-22
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 362 DPDPNPKNEEQAVARAHRIGQKREVKVI 389
DP P PK + V R + K+E + +
Sbjct: 990 DPPPRPKPVKMKVNRMLQPVPKQEGRTV 1017
Score = 37 (18.1 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 995 SALSFTGPLSTSVSTPSPR 1013
+A SF+GP P PR
Sbjct: 1863 TATSFSGPRPRRQPPPPPR 1881
>WB|WBGene00007053 [details] [associations]
symbol:chd-7 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR023780 KO:K14437 GeneTree:ENSGT00560000077077
EMBL:FO080504 EMBL:FO080107 RefSeq:NP_491426.2 PaxDb:O61845
EnsemblMetazoa:T04D1.4 GeneID:172079 KEGG:cel:CELE_T04D1.4
UCSC:T04D1.4 CTD:172079 WormBase:T04D1.4 HOGENOM:HOG000213105
InParanoid:O61845 OMA:LLAFRME NextBio:873933 Uniprot:O61845
Length = 2967
Score = 548 (198.0 bits), Expect = 1.5e-48, P = 1.5e-48
Identities = 182/580 (31%), Positives = 289/580 (49%)
Query: 38 LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLT 96
+K + L+TT+E ++ D L K+ W+ +IDEA R+K+R +L L +R + R+LLT
Sbjct: 1307 VKIDALITTFETVVSDVEFLKKIPWRVCVIDEAHRLKNRNCKLLVNGLLAFRMEHRVLLT 1366
Query: 97 GTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIII 156
GTPLQN+ P+ FDN F + F + DD +
Sbjct: 1367 GTPLQNNIDELFSLLNFLHPQQFDNSATFLEQFG--------SCQTDDQ----------V 1408
Query: 157 HRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEK 216
+L +IL+P MLRR EDVE SL PK ++ ++S +Q Y I +
Sbjct: 1409 QKLQEILKPMMLRRLKEDVEKSLGPKEETIIEVQLSDMQKKFYRAIL------------E 1456
Query: 217 RRVQKNPIYQAKVYKTLNNRCMELRKTCNHP-LLN-------------YPYFSD--LSKD 260
R + + +L N MELRK CNHP L+N +P + + L+
Sbjct: 1457 RNFSH--LCKGTSAPSLMNVMMELRKCCNHPFLINGAEEAIMNDFRLAHPDWDEETLAHK 1514
Query: 261 FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 320
L+++ GK+ +++++L KL++ GH+VL+FS M K+LD+LEE+L + RIDG +
Sbjct: 1515 ALIQASGKVVLIEKLLPKLRKDGHKVLIFSQMVKVLDLLEEFLISMSYPFERIDGNVRGD 1574
Query: 321 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 380
R++AI F+ +SD F+FLL RA G G+NL +ADTVII+D D NP+N+ QA AR HRI
Sbjct: 1575 LRQAAIDRFSKENSDRFVFLLCTRAGGLGINLTAADTVIIFDSDWNPQNDLQAQARCHRI 1634
Query: 381 GQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQY 440
GQK+ VKV + I+S+ E E+ ++ L D A + S L
Sbjct: 1635 GQKKLVKVYRL------ITSNTYEREMFDKASLKLGLDKA----VLQSTTALKAEGTALS 1684
Query: 441 KIDMADEVINAGRF-----DQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIA 495
K D+ +E++ G + ++ + + +ET+L +R +T+ + + Q+ + A
Sbjct: 1685 KKDV-EELLKKGAYGSIMDEENESSKFNEEDIETIL---QRRTQTI-TLEAGQK-GSLFA 1738
Query: 496 R-----SEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNIL 550
+ S ++ + D D EF W + + QV +T + I +K +K
Sbjct: 1739 KATFNSSHNKGDDIDIDDPEF-WTKWAEKA-QVDVEKATATPDGRELIIEEPRKRTKRFE 1796
Query: 551 FGSNIGVDSGEIET-ERKRGPKGKKYPNYKEVDDEIGEYS 589
+ G G E+ RKRG K+ + +DE G+YS
Sbjct: 1797 ENKDEGDSDGSEESGNRKRGAAEKR--KRRRGNDEDGDYS 1834
>TAIR|locus:2040184 [details] [associations]
symbol:PKL "PICKLE" species:3702 "Arabidopsis thaliana"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0016568
"chromatin modification" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=IMP] [GO:0009733 "response to
auxin stimulus" evidence=IMP] [GO:2000023 "regulation of lateral
root development" evidence=IMP] [GO:0009788 "negative regulation of
abscisic acid mediated signaling pathway" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0009739 "response to gibberellin
stimulus" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0008270
GO:GO:0016568 GO:GO:0048364 GO:GO:0009739 GO:GO:0009788
GO:GO:0009736 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOGENOM:HOG000231124 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF185578 EMBL:AF185577 EMBL:AK229409 IPI:IPI00521160
PIR:T52301 RefSeq:NP_565587.1 UniGene:At.11745
ProteinModelPortal:Q9S775 SMR:Q9S775 STRING:Q9S775 PaxDb:Q9S775
PRIDE:Q9S775 EnsemblPlants:AT2G25170.1 GeneID:817055
KEGG:ath:AT2G25170 TAIR:At2g25170 InParanoid:Q9S775 OMA:NVVMYFG
PhylomeDB:Q9S775 ProtClustDB:CLSN2688404 Genevestigator:Q9S775
GermOnline:AT2G25170 GO:GO:2000023 Uniprot:Q9S775
Length = 1384
Score = 429 (156.1 bits), Expect = 3.7e-48, Sum P(3) = 3.7e-48
Identities = 103/240 (42%), Positives = 146/240 (60%)
Query: 156 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 215
I RLH++L P +LRR +DV +PPK ++LR +S++Q Y KA T +
Sbjct: 492 ISRLHKMLAPHLLRRVKKDVMKDMPPKKELILRVDLSSLQKEYY---KAIFTRNYQVLTK 548
Query: 216 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP-LLN--YPYFSDLSKDF--LVKSCGKLW 270
K Q + LNN MELRK C HP +L P D ++ F L++SCGKL
Sbjct: 549 KGGAQIS----------LNNIMMELRKVCCHPYMLEGVEPVIHDANEAFKQLLESCGKLQ 598
Query: 271 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 330
+LD++++KL+ GHRVL+++ +LD+LE+Y ++ Y RIDG +R+ I FN
Sbjct: 599 LLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRFN 658
Query: 331 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 390
+ +S+ F FLLS RA G G+NL +ADTVIIYD D NP + QA+ARAHR+GQ +V +IY
Sbjct: 659 AKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKV-MIY 717
Score = 167 (63.8 bits), Expect = 3.7e-48, Sum P(3) = 3.7e-48
Identities = 39/115 (33%), Positives = 61/115 (53%)
Query: 24 KDQRSRLFSQEVAA--LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLA 81
K ++S S E +KF+VL+T+YE I D + L + W+ +I+DE R+K+++S L
Sbjct: 376 KKKKSGQISSESKQKRIKFDVLLTSYEMINLDSAVLKPIKWECMIVDEGHRLKNKDSKLF 435
Query: 82 RDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKE 136
L +Y R+LLTGTPLQN+ F + + F + F Q+E
Sbjct: 436 SSLTQYSSNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEE 490
Score = 51 (23.0 bits), Expect = 3.7e-48, Sum P(3) = 3.7e-48
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQE 34
W+ E W P ++ + Y G R+ + E
Sbjct: 335 WEREFATWAPQMNVVMYFGTAQARAVIREHE 365
Score = 37 (18.1 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 878 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETS 914
I R K + L RR++K+ + +P +L R++ S
Sbjct: 492 ISRLHKMLAPHLLRRVKKDVMKDMPPKKELILRVDLS 528
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 303 (111.7 bits), Expect = 4.0e-48, Sum P(3) = 4.0e-48
Identities = 81/205 (39%), Positives = 116/205 (56%)
Query: 253 YFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 312
YF D K + CGKL L +L +L++ GHR L+F+ MTK+LDI E +L Y R
Sbjct: 1367 YFPD--KRLIQYDCGKLQQLAILLRRLKQQGHRALIFTQMTKMLDIFETFLNLHAYTYLR 1424
Query: 313 IDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQ 372
+DG+T ++ R+ FN+ D F+F+LS R+ G GLNL ADTVI YD D NP + Q
Sbjct: 1425 LDGSTKIDKRQVLTERFNT-DPKIFLFILSTRSGGLGLNLTGADTVIFYDTDWNPSMDAQ 1483
Query: 373 AVARAHRIGQKREVKV---IYMEAVVDKI--SSHQKE--DEL--RSGG-TVDLEDDLAGK 422
A R HRIGQ REV + I + + I S+QK D++ ++G T D +L
Sbjct: 1484 AQDRCHRIGQTREVNIYRFITQHTIEENILKKSNQKRQLDKMVIKAGEFTTDFFKNLNLS 1543
Query: 423 DRYIGSIEGLIRNNIQQYKIDMADE 447
+ SI+ I++N+ Q + + A E
Sbjct: 1544 TK--SSID-TIKDNVTQQEWENAVE 1565
Score = 303 (111.7 bits), Expect = 4.0e-48, Sum P(3) = 4.0e-48
Identities = 68/205 (33%), Positives = 106/205 (51%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W+ E +W P + Y G R + F+V +T+Y +M D + W
Sbjct: 845 WEMEFKRWCPGLKIFTYHGTSRDRKANRKGWSKSNAFHVCITSYSMVMSDHLIFRRKKWV 904
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y+I+DEA +K+ ++ +++ + +RRLLLTGTPLQN+ P++F + +
Sbjct: 905 YMILDEAHVIKNFKTQRWQNMLHFNTERRLLLTGTPLQNNLMELWSLMHFLMPDIFQSHR 964
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F DWFS P G DD E II+RLH +L PF+LRR +DVE +PPK
Sbjct: 965 EFQDWFSNPVT--GMIEGGDD---VNED---IINRLHAVLRPFLLRRLKKDVEKQMPPKH 1016
Query: 184 SIVLRCRMSAIQSAIYD-WIKATGT 207
+ ++ C MS Q +Y+ +I ++ T
Sbjct: 1017 THIVPCSMSRRQKFLYEEFINSSST 1041
Score = 134 (52.2 bits), Expect = 1.5e-30, Sum P(3) = 1.5e-30
Identities = 33/94 (35%), Positives = 52/94 (55%)
Query: 155 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYD-WIKATGTLRVDPE 213
II+RLH +L PF+LRR +DVE +PPK + ++ C MS Q +Y+ +I ++ T
Sbjct: 988 IINRLHAVLRPFLLRRLKKDVEKQMPPKHTHIVPCSMSRRQKFLYEEFINSSST------ 1041
Query: 214 DEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 247
++ + + +N M+LRK CNHP
Sbjct: 1042 -------QSTLSSGSFFSIINI-LMQLRKVCNHP 1067
Score = 59 (25.8 bits), Expect = 4.0e-48, Sum P(3) = 4.0e-48
Identities = 27/163 (16%), Positives = 66/163 (40%)
Query: 435 NNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMI 494
N IQ++ + + E I++ + T ++++ + +++ Q+ Q+ +
Sbjct: 1640 NPIQKFALKLT-ESISSFTLESYGTVTKQQLKQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 1698
Query: 495 ARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSN 554
+ + + + Q ++ ++ + Q PK L+ K+ N +K ++N N
Sbjct: 1699 QQQQQKQKQQQQQQQQQ---QQQQQQQQQPKILKLDEKDKENLKENEKEKENENENENEN 1755
Query: 555 IGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERN 597
+ E ER++ K + KE +E E ++ N
Sbjct: 1756 ENEKEKDNEKEREKQEKENEIEIEKEKGNEKENEKENEKEKEN 1798
Score = 54 (24.1 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 26/119 (21%), Positives = 54/119 (45%)
Query: 430 EGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQE 489
E +++ + Q+ ++D VI AG F TT + + L T + +T+ D + QE
Sbjct: 1510 ENILKKSNQKRQLDKM--VIKAGEF---TTDFFKNLNLST-----KSSIDTIKDNVTQQE 1559
Query: 490 VNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKN 548
+ ++EDE ++ + E + ++ K ++S + T +N+S + N
Sbjct: 1560 WENAVEQAEDESDVLAYKNALKEADNEYQEFVEI-KDDKSSFTTITTTTSNVSTPTTNN 1617
Score = 46 (21.3 bits), Expect = 9.0e-47, Sum P(3) = 9.0e-47
Identities = 19/82 (23%), Positives = 32/82 (39%)
Query: 484 VPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSK 543
VPS N +R + E +LFD ++ G E ++ +++ + +
Sbjct: 2253 VPSTT-TNSSTSRKKSEYDLFDASSQDEGSTNESGSTTNNNNINNPTSTSSSSSSSGRKR 2311
Query: 544 KPSKNILFGSNIGVDSGEIETE 565
K L SN GV G + E
Sbjct: 2312 DRKKQRLSKSNGGVGGGGSDLE 2333
Score = 42 (19.8 bits), Expect = 1.0e-19, Sum P(3) = 1.0e-19
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 370 EEQAVARAHRIGQKREVKVIY-MEAVVDKISSHQKEDELRS 409
++ ++ H +++E K++ M+ DKI ++E+E R+
Sbjct: 2095 QQYVYSKQHTKEKEKERKLLMKMKKEKDKIEKAKQEEERRA 2135
Score = 41 (19.5 bits), Expect = 5.4e-19, Sum P(3) = 5.4e-19
Identities = 17/58 (29%), Positives = 24/58 (41%)
Query: 540 NLSKKPSKNILFGSNIGVDSGEIETERKRGPKGK-KYPN-YKEVDDEIGEYSEASSDE 595
NLS K S + + N+ E E+ Y N KE D+E E+ E D+
Sbjct: 1541 NLSTKSSIDTI-KDNVTQQEWENAVEQAEDESDVLAYKNALKEADNEYQEFVEIKDDK 1597
Score = 40 (19.1 bits), Expect = 5.4e-19, Sum P(3) = 5.4e-19
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 463 RRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQM 507
+ + L L D Y+ + S Q +N +I + +ELF+Q+
Sbjct: 1102 KNLNLNLLNLDLINYENSFSHYDSNQ-INSLIPKESVLLELFNQL 1145
Score = 39 (18.8 bits), Expect = 4.8e-46, Sum P(3) = 4.8e-46
Identities = 34/244 (13%), Positives = 91/244 (37%)
Query: 580 EVDDEIGEYSEASSDERNGYP--VQXXXXXXXXXXXXXYSGAVGAPLSNKDQSEEDGPVC 637
E + ++ Y A + N Y V+ + V P +N S +D
Sbjct: 1568 EDESDVLAYKNALKEADNEYQEFVEIKDDKSSFTTITTTTSNVSTPTTNN--SSDD---- 1621
Query: 638 EGGYDYLRPSENTRNNHVVEEAXXXXXXXXXRRLTQIVSPVSPQKFGSLSA--LEARPGS 695
D + +NT++ +VE+ + LT+ +S + + +G+++ L+ +
Sbjct: 1622 ---IDMVDVDDNTQD--LVEDYLNPIQKFALK-LTESISSFTLESYGTVTKQQLKQQQQQ 1675
Query: 696 LSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHT 755
++ + ++ + QQ + + + +Q Q + ++ + +++ +
Sbjct: 1676 QQQQQQQQQQQQQQQQQQQQQQQQQQQQKQKQQQQQQQQQQQQQQQQQQPKILKLDEKDK 1735
Query: 756 VERPEERSCTDTPLHRGDSSLLPFQMDN-KYPAQLRTDTEMKAHGESNSLRHDQSEPSSK 814
E + + + + DN K + + E++ E + + ++ E + K
Sbjct: 1736 ENLKENEKEKENENENENENENEKEKDNEKEREKQEKENEIEIEKEKGNEKENEKE-NEK 1794
Query: 815 SRRN 818
+ N
Sbjct: 1795 EKEN 1798
Score = 38 (18.4 bits), Expect = 2.7e-19, Sum P(3) = 2.7e-19
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 364 DPNPKNEEQAVARAHRIGQKREVKV 388
D N N+ + R R+G+ ++V +
Sbjct: 1965 DENEGNDFEGGGRGGRVGEGKKVMI 1989
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 314 (115.6 bits), Expect = 4.2e-48, Sum P(3) = 4.2e-48
Identities = 86/263 (32%), Positives = 144/263 (54%)
Query: 249 LNYPYFSDLSKDF----LVK-SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL 303
L +P S+++ F L++ CGKL +DR+L +L+ GHRVL+F+ MTK+LD+LE +L
Sbjct: 1635 LLHPIISEMTTKFPDPRLIQYDCGKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFL 1694
Query: 304 QWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP 363
+ +Y R+DG+T +E R+ + FN D F F+LS R+ G G+NL ADTVI YD
Sbjct: 1695 NYHGHIYLRLDGSTRVEQRQILMERFNG-DKRIFCFILSTRSGGVGINLTGADTVIFYDS 1753
Query: 364 DPNPKNEEQAVARAHRIGQKREVKV--IYMEAVVDKISSHQKEDELRSGGTVDLEDDLAG 421
D NP + QA R HRIGQ R+V + + E ++ ++ +K ++ R + +E
Sbjct: 1754 DWNPTMDAQAQDRCHRIGQTRDVHIYRLVSERTIE-VNILKKANQKRMLSDMAIEGGNFT 1812
Query: 422 KDRYIGS-IEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQET 480
+ S I+ L ++Q + D + + +++ +++R + TL ET
Sbjct: 1813 TTYFKSSTIKDLF--TMEQSEQDESSQ--------EKSENKDRIVATTTLSDTPSTVVET 1862
Query: 481 VHDVPSLQEVNRMIARSEDEVEL 503
+ SL+ +A +EDE ++
Sbjct: 1863 --EKQSLRAFEHALAAAEDEQDV 1883
Score = 309 (113.8 bits), Expect = 4.2e-48, Sum P(3) = 4.2e-48
Identities = 68/200 (34%), Positives = 107/200 (53%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
M W+ E KW P + Y G++ +R F+V +T+Y+ ++ D+ +
Sbjct: 975 MLNWEMEFKKWCPGFKILTYYGSQKERKLKRVGWTKPNAFHVCITSYKLVVQDQQSFRRK 1034
Query: 61 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFD 120
WKY+I+DEAQ +K+ +S + L + +RRLLLTGTPLQND P VF
Sbjct: 1035 KWKYLILDEAQNIKNFKSQRWQLLLNFSTERRLLLTGTPLQNDLMELWSLMHFLMPYVFS 1094
Query: 121 NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP 180
+ + F +WFS P G + ++ ET +I RLH+++ PF+LRR ++VE +P
Sbjct: 1095 SHREFKEWFSNPMT--GMIEG-NMEYNET-----LITRLHKVIRPFLLRRLKKEVEKQMP 1146
Query: 181 PKVSIVLRCRMSAIQSAIYD 200
K V+ CR+S Q +Y+
Sbjct: 1147 KKYEHVITCRLSNRQRYLYE 1166
Score = 126 (49.4 bits), Expect = 4.5e-29, Sum P(3) = 4.5e-29
Identities = 32/93 (34%), Positives = 47/93 (50%)
Query: 155 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 214
+I RLH+++ PF+LRR ++VE +P K V+ CR+S Q +Y ED
Sbjct: 1121 LITRLHKVIRPFLLRRLKKEVEKQMPKKYEHVITCRLSNRQRYLY-------------ED 1167
Query: 215 EKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 247
R + Q ++ N M+LRK CNHP
Sbjct: 1168 FMSRAKTRETLQTGNLLSVINVLMQLRKVCNHP 1200
Score = 42 (19.8 bits), Expect = 4.2e-48, Sum P(3) = 4.2e-48
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 1165 KRLRTDAG---KRRPSQL 1179
KR RTDAG RRP+++
Sbjct: 2064 KRSRTDAGYDGSRRPNKM 2081
Score = 38 (18.4 bits), Expect = 1.1e-47, Sum P(3) = 1.1e-47
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 677 PVSPQKFGSLSALEARPGSLSKRM 700
PVSPQ ++ A + R ++M
Sbjct: 2304 PVSPQNIAAMKANKIREKQRGQQM 2327
>UNIPROTKB|F1NVT7 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00818616
Ensembl:ENSGALT00000040615 ArrayExpress:F1NVT7 Uniprot:F1NVT7
Length = 1257
Score = 542 (195.9 bits), Expect = 4.6e-48, Sum P(2) = 4.6e-48
Identities = 150/411 (36%), Positives = 209/411 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA-----------ALKFNVLVTTYEFIMY 52
W+ E W ++ I Y G++ R + E+ KF V++TT+E I+
Sbjct: 446 WEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDTQGNPLPGIFKFQVVITTFEMILA 504
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
D +L K+ W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 505 DCPELKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLN 564
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P+ F + AF + F L+TE++V +L IL+P MLRR
Sbjct: 565 FLEPQQFPSETAFLEEFGD---------------LKTEEQV---KKLQSILKPMMLRRLK 606
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
+DVE +L PK ++ ++ IQ Y I + K Q N
Sbjct: 607 DDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS----KGANQHN-------MPN 655
Query: 233 LNNRCMELRKTCNHP-LLN---YPYFSDLSK-------DF----LVKSCGKLWILDRILI 277
L N MELRK CNHP L+N D K DF ++++ GKL ++D++L
Sbjct: 656 LINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPEAPDFQLQAMIQAAGKLVLIDKLLP 715
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
KL GH+VL+FS M + LDILE+YL R+ Y RIDG R++AI F DSD F
Sbjct: 716 KLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRF 775
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV
Sbjct: 776 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV 826
Score = 48 (22.0 bits), Expect = 4.6e-48, Sum P(2) = 4.6e-48
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 565 ERKRGPKGKKYPNYKEVDDEIGEYSE--ASSDER 596
+R R K K+ N E +DE+ E+SE + SDER
Sbjct: 968 DRPRVRKQTKHYNSFE-EDELMEFSELDSDSDER 1000
>ASPGD|ASPL0000048785 [details] [associations]
symbol:AN1956 species:162425 "Emericella nidulans"
[GO:0016581 "NuRD complex" evidence=IEA] [GO:0033553 "rDNA
heterochromatin" evidence=IEA] [GO:0044732 "mitotic spindle pole
body" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0031934 "mating-type region heterochromatin"
evidence=IEA] [GO:0031933 "telomeric heterochromatin" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0030702 "chromatin silencing at centromere" evidence=IEA]
InterPro:IPR000014 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00091 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0004871
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
EMBL:AACD01000029 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OrthoDB:EOG4GQTD1 RefSeq:XP_659560.1 ProteinModelPortal:Q5BBX4
EnsemblFungi:CADANIAT00008616 GeneID:2875239 KEGG:ani:AN1956.2
HOGENOM:HOG000192830 OMA:SFARVWA Uniprot:Q5BBX4
Length = 1443
Score = 426 (155.0 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
Identities = 147/455 (32%), Positives = 230/455 (50%)
Query: 156 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 215
I LH+++ PF LRR V LPP V I++ MS +Q +Y I A T + +
Sbjct: 807 IPELHELIRPFFLRRTKAQVLTFLPPVVQIIVPVTMSVLQKKLYKSILAKNTQLIKAIFQ 866
Query: 216 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKD------FLVKSCGKL 269
R + P+ Q + + LNN M+LRK HP + + + D LV + GKL
Sbjct: 867 -RNEEDQPLKQTERHN-LNNILMQLRKCLCHPFIFSKAIEERTDDPEVAHRNLVDAAGKL 924
Query: 270 WILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT-TSLEDRESAIVD 328
+L+ +L KLQ GHRVL+FS + LD++E++L L +RR+DG TSLE ++ I D
Sbjct: 925 QLLELMLPKLQARGHRVLVFSQFLENLDVMEDFLDGLGLPHRRLDGRMTSLE-KQRMIDD 983
Query: 329 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
+N+ +S F FLLS R+ G G+NL +ADTVII DPD NP + QA++RAHRIGQK KV
Sbjct: 984 YNAENSPYFAFLLSTRSGGVGINLATADTVIIMDPDFNPHQDMQALSRAHRIGQKN--KV 1041
Query: 389 IYMEAVVDKISSHQKEDEL-RSGGTVD--LEDDLAGKDRYIGSIEGLIRNNIQQYKIDMA 445
+ + ++ + S+ +K ++ R +D L D +A +D +E ++R+ + D
Sbjct: 1042 LVFQLMI-RGSAEEKIMQIGRKKMVLDHVLIDRMAAEDDDGEDLESILRHGAKAL-FD-- 1097
Query: 446 DEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVP-SLQEVNRMIARSEDEVELF 504
D+ N+G D T E +++ LL + Q T D S E + + D L
Sbjct: 1098 DD--NSG--DIIYTSE----SVDRLLDRSQAEQATNPDTNVSASEFSFAQVWAADSQGLE 1149
Query: 505 DQMD--EEFGWIEEMTRYDQVPKWLRASTKEVN--ATIANLSKKPSKNILFGSNIGVDSG 560
DQ++ EE I T + + RA+ +E A I K+ + + + VD+
Sbjct: 1150 DQLNVAEEDPTISNQTWEKILQERERAAAEEARKKAEILGRGKRKRATVDYSA---VDAD 1206
Query: 561 EIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDE 595
+ + ++E DE G S+ S ++
Sbjct: 1207 PAPARALASRETESDAEFRE--DEAGVASDYSMED 1239
Score = 171 (65.3 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
Identities = 36/107 (33%), Positives = 63/107 (58%)
Query: 4 WQSELHKWLPSVSCIYYVGAK-----DQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSK 56
W+ EL W+PS+ + Y G+ Q +F + L+ +V++T+YE ++ D R
Sbjct: 669 WRKELKTWVPSLRAVTYYGSSLARKMAQEHEMFIRGDPDLRCHVVITSYETMVDDSCRKV 728
Query: 57 LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQND 103
LS++ W +I+DE QR+K +S + L + + ++L+TGTPLQN+
Sbjct: 729 LSRIPWAGLIVDEGQRLKSDKSQIYEGLSKMKFPFKVLMTGTPLQNN 775
Score = 40 (19.1 bits), Expect = 3.7e-33, Sum P(3) = 3.7e-33
Identities = 11/53 (20%), Positives = 26/53 (49%)
Query: 9 HKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVD 61
++WLP S + Y+ + S++ + V + ++E + S+L K++
Sbjct: 34 YEWLPGHSTVRYI-----IHEVLSEDSYEPSYLVKLESHELEVISSSRLQKLE 81
Score = 38 (18.4 bits), Expect = 3.7e-33, Sum P(3) = 3.7e-33
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 120 DNRKAFHDWFSQPF 133
D + A+ DW +PF
Sbjct: 557 DFKAAYADWAKKPF 570
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 316 (116.3 bits), Expect = 6.7e-48, Sum P(3) = 6.7e-48
Identities = 68/141 (48%), Positives = 93/141 (65%)
Query: 267 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 326
GKL +LD++L L+ GHRVL++S TK+++ILE+++ +R+ Y R+DG++ L+DR +
Sbjct: 1767 GKLQVLDKLLKDLKVGGHRVLIYSQFTKMINILEDFMIFRKYKYLRLDGSSKLDDRRDMV 1826
Query: 327 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 386
DF S D F FLLS RA G G+NL SADTVI YD D NP +EQA RAHR+GQ R V
Sbjct: 1827 DDFQS-DPSIFAFLLSTRACGIGINLTSADTVIFYDSDWNPTVDEQAQDRAHRLGQTRPV 1885
Query: 387 KV---IYMEAVVDKISSHQKE 404
V I + +KI K+
Sbjct: 1886 TVYRLITKNTIEEKILKRAKQ 1906
Score = 303 (111.7 bits), Expect = 6.7e-48, Sum P(3) = 6.7e-48
Identities = 74/250 (29%), Positives = 122/250 (48%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRL---FSQEVAALK---FNVLVTTYEFIMYDRSKL 57
W++E K++P+ I Y G + QR+ + ++ + + F+VL+T+Y I+ D
Sbjct: 1226 WKNEFAKFVPAFKVIPYWGTQQQRTTIRKYWNPKKLYHRNSPFHVLITSYNVIVRDEKYF 1285
Query: 58 SKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPE 117
++ W+Y+++DEA +K S + L + C+ RLLLTGTP+QN P
Sbjct: 1286 HRLRWQYMVLDEAHAIKSSASNRWKTLMSFNCRNRLLLTGTPIQNSMAELWALLHFIMPT 1345
Query: 118 VFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG 177
FD+ F +WFS+ + H L + ++RLH IL+PFMLRR DVE
Sbjct: 1346 FFDSHDEFAEWFSKDIEN----HAMSQGGLNEHQ----LNRLHMILKPFMLRRIKRDVEN 1397
Query: 178 SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 237
+P K + + C ++ Q +Y I++ ++ + + K L N
Sbjct: 1398 EMPSKTEVEVYCNLTHRQKKLYQSIRSNISIT-------ELLGGASFSEQGSMKALMNFV 1450
Query: 238 MELRKTCNHP 247
M+ RK CNHP
Sbjct: 1451 MQFRKVCNHP 1460
Score = 42 (19.8 bits), Expect = 8.0e-21, Sum P(3) = 8.0e-21
Identities = 18/78 (23%), Positives = 33/78 (42%)
Query: 167 MLRRRVEDVEGSLPPKVSI--VLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPI 224
M++R ++ ++ PPK + +R + + Y W K D + KRR +K
Sbjct: 921 MMKRELK-IKNQKPPKATKDNQIRAKKLVKEMGAY-WRK----FDKDEREAKRRAEKEEA 974
Query: 225 YQAKVYKTLNNRCMELRK 242
Q K + + + RK
Sbjct: 975 NQRKREEEVQEAKRQQRK 992
Score = 38 (18.4 bits), Expect = 6.7e-48, Sum P(3) = 6.7e-48
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 1002 PLSTSVSTPSPRQTTV 1017
P +T++STPS T V
Sbjct: 2101 PSNTTLSTPSTSPTMV 2116
>UNIPROTKB|H3BTW3 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00384 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 EMBL:AC007906
EMBL:AC079416 HGNC:HGNC:25701 Ensembl:ENST00000565803 Bgee:H3BTW3
Uniprot:H3BTW3
Length = 1099
Score = 544 (196.6 bits), Expect = 7.3e-48, Sum P(2) = 7.3e-48
Identities = 157/465 (33%), Positives = 234/465 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
W+ E W ++ + Y G+ R + E+ A +F ++TT+E I+
Sbjct: 449 WEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILG 507
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
+L+ ++W+ +IIDEA R+K++ L L + ++LLTGTPLQN
Sbjct: 508 GCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLH 567
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + F F L+TE++V +L IL+P MLRR
Sbjct: 568 FLEPLRFPSESTFMQEFGD---------------LKTEEQV---QKLQAILKPMMLRRLK 609
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
EDVE L PK ++ ++ IQ Y R E + K Q V
Sbjct: 610 EDVEKKLAPKEETIIEVELTNIQKKYY---------RAILEKNFSFLSKGA-GQTNV-PN 658
Query: 233 LNNRCMELRKTCNHPLL--------------NY-PYFSDLSKDFLVKSCGKLWILDRILI 277
L N MELRK CNHP L Y P SD +++S GKL ++D++L
Sbjct: 659 LVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLP 718
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
K++ GH+VL+FS M + LDILE+YL ++ +Y RIDG R++AI F+ DSD F
Sbjct: 719 KMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 778
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y +V +
Sbjct: 779 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKV-YR--LVTR 835
Query: 398 ISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 438
+S+++E D L+ G + ++G++ +G I+ L + I+
Sbjct: 836 -NSYEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIE 879
Score = 41 (19.5 bits), Expect = 7.3e-48, Sum P(2) = 7.3e-48
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 556 GVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 594
G +S I+T R R K+ + DE+ E SEA S+
Sbjct: 965 GRNSLVIDTPRIR----KQTRPFSATKDELAELSEAESE 999
>DICTYBASE|DDB_G0293012 [details] [associations]
symbol:DDB_G0293012 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000626
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00213 SMART:SM00298
SMART:SM00490 dictyBase:DDB_G0293012 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0004003
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
EMBL:AAFI02000199 InterPro:IPR022617 Pfam:PF11976
RefSeq:XP_629261.1 ProteinModelPortal:Q54CF8
EnsemblProtists:DDB0220643 GeneID:8628981 KEGG:ddi:DDB_G0293012
InParanoid:Q54CF8 OMA:IMINEDI Uniprot:Q54CF8
Length = 3071
Score = 414 (150.8 bits), Expect = 8.6e-48, Sum P(3) = 8.6e-48
Identities = 97/244 (39%), Positives = 142/244 (58%)
Query: 156 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 215
+ +LHQ+L P++LRR EDVE S+P K V++ +S+ Q Y I +
Sbjct: 1098 VSKLHQLLSPYLLRRMKEDVELSIPIKEETVIQVELSSTQKTYYRAIL----------ER 1147
Query: 216 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSK-----------DFLVK 264
R I Q L+N +++RK CNHP L + K + LVK
Sbjct: 1148 NREFLSRGIKQKTNLPKLSNIMIQIRKVCNHPFLIPGAEESIVKQEKIAGDEELGELLVK 1207
Query: 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 324
S KL ++D++L +L+ GH+VL+FS M + L+ILE+YLQ+R+ Y R+DG+ E R++
Sbjct: 1208 SSSKLVLVDKLLQRLKAEGHQVLIFSQMVESLNILEDYLQYREYTYERLDGSIKSEVRQA 1267
Query: 325 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 384
+I F ++ F+FLLS RA G G+NL +ADTVI++D D NP+++ QA AR HRIGQ
Sbjct: 1268 SIDRFQDKGANRFVFLLSTRAGGVGINLTTADTVILFDSDWNPQSDLQAQARCHRIGQTN 1327
Query: 385 EVKV 388
VKV
Sbjct: 1328 NVKV 1331
Score = 192 (72.6 bits), Expect = 8.6e-48, Sum P(3) = 8.6e-48
Identities = 44/131 (33%), Positives = 70/131 (53%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA---ALKFNVLVTTYEFIMYDRSKLSKV 60
W E+ KW + ++Y G+++ R + E F VL+TTYE IM D S +V
Sbjct: 962 WHKEILKWTKMKTLVFY-GSQETRGFISKYEFKHKDTYLFEVLLTTYETIMSDHSSFVRV 1020
Query: 61 DWKYIIIDEAQRMK-DRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
W+ +I+DE R+K D+ VL++ L + + ++LTGTPLQND P+ F
Sbjct: 1021 PWRALILDEGHRIKNDKSKVLSK-LKSIKTEHSIILTGTPLQNDMKELWTMLNFLDPDKF 1079
Query: 120 DNRKAFHDWFS 130
++ + F D +S
Sbjct: 1080 NSCQEFLDEYS 1090
Score = 57 (25.1 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 27/97 (27%), Positives = 44/97 (45%)
Query: 461 EERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDE---VELFDQMDEEFGWIEEM 517
EE + E + DEE + V L V++++ R + E V +F QM E +E+
Sbjct: 1186 EESIVKQEKIAGDEELGELLVKSSSKLVLVDKLLQRLKAEGHQVLIFSQMVESLNILEDY 1245
Query: 518 TRYDQVP-KWLRASTK-EVN-ATIANLSKKPSKNILF 551
+Y + + L S K EV A+I K + +F
Sbjct: 1246 LQYREYTYERLDGSIKSEVRQASIDRFQDKGANRFVF 1282
Score = 52 (23.4 bits), Expect = 8.6e-48, Sum P(3) = 8.6e-48
Identities = 23/138 (16%), Positives = 58/138 (42%)
Query: 702 DELEEGEIAVSGDS--HMDHQ-QSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVER 758
D+++E + V + ++D + + ++D ++ +D + + K K + + +
Sbjct: 1912 DKVDENKEKVENNEKVNVDEKSKDNEKSNDSEKSKDNEKSKDDEKSKDDEKSKDDEK-SQ 1970
Query: 759 PEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRN 818
+E+S D + S L D P ++ +++ + E S+ + + S K ++
Sbjct: 1971 DDEKSKDDEKSKDDEKSKLEENQDESTPMEVDKESKSTSSSEKQSIEIKEEKESEKKPQD 2030
Query: 819 LPSRKIANAPKSRASLKT 836
N KS ++ T
Sbjct: 2031 -NDNATENGVKSPSTTNT 2047
Score = 51 (23.0 bits), Expect = 3.4e-47, Sum P(4) = 3.4e-47
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 532 KEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEA 591
KE+++ + +K+ +N + VD + E+ + K N K DDE + E
Sbjct: 1907 KEISSDKVDENKEKVEN---NEKVNVDEKSKDNEKSNDSEKSK-DNEKSKDDEKSKDDEK 1962
Query: 592 SSDE 595
S D+
Sbjct: 1963 SKDD 1966
Score = 47 (21.6 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 885 VISKLQRRIEKEGHQIV 901
++ KL +R++ EGHQ++
Sbjct: 1214 LVDKLLQRLKAEGHQVL 1230
Score = 46 (21.3 bits), Expect = 3.4e-47, Sum P(4) = 3.4e-47
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 786 PAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLP 820
P Q + + + S +H Q +P S R+ +P
Sbjct: 2923 PQQRQPNLPLSPSHHQQSQQHHQQQPLSPQRQQIP 2957
Score = 45 (20.9 bits), Expect = 4.3e-47, Sum P(4) = 4.3e-47
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 782 DNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRR-NLPSRKIANAPKSRAS 833
+NK P+ R M +++S RH S SKS+ N S+ +N+ S ++
Sbjct: 2511 NNKLPSLDR----MINKNDNSSHRHHSSSKHSKSQSSNQSSKPFSNSSSSSSN 2559
Score = 45 (20.9 bits), Expect = 4.3e-47, Sum P(4) = 4.3e-47
Identities = 21/106 (19%), Positives = 48/106 (45%)
Query: 712 SGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHR 771
S ++ D+ S S ++ Q Q +++S ++ ++ R ++ TD L +
Sbjct: 2275 SNQNNTDNIDSDSGNNNNQNSSTNQQQQ----QQQSEKIPSSESLRRRIQK-VTDQILKK 2329
Query: 772 GDSSLLPFQ-MDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSR 816
S ++ Q M + QL+ +MK E + Q++P+ +++
Sbjct: 2330 EHSDMIMKQHMAQQKLHQLQLQQQMKEQKEKE-FQQQQNQPNQQNQ 2374
Score = 44 (20.5 bits), Expect = 1.4e-08, Sum P(4) = 1.4e-08
Identities = 18/91 (19%), Positives = 46/91 (50%)
Query: 370 EEQAVARAHRIGQ---KREVKVIYMEAVVDKISS--HQKEDELRSGGTVD-LEDDLAGKD 423
+++ +A +G+ K K++ ++ ++ ++ + HQ + +++ LED L ++
Sbjct: 1191 KQEKIAGDEELGELLVKSSSKLVLVDKLLQRLKAEGHQVLIFSQMVESLNILEDYLQYRE 1250
Query: 424 RYIGSIEGLIRNNIQQYKIDMADEVINAGRF 454
++G I++ ++Q ID + A RF
Sbjct: 1251 YTYERLDGSIKSEVRQASIDRFQDK-GANRF 1280
Score = 40 (19.1 bits), Expect = 4.6e-46, Sum P(4) = 4.6e-46
Identities = 6/29 (20%), Positives = 17/29 (58%)
Query: 473 DEERYQETVHDVPSLQEVNRMIARSEDEV 501
++++ Q+ +PS + + R I + D++
Sbjct: 2298 NQQQQQQQSEKIPSSESLRRRIQKVTDQI 2326
Score = 39 (18.8 bits), Expect = 1.8e-46, Sum P(4) = 1.8e-46
Identities = 18/103 (17%), Positives = 43/103 (41%)
Query: 794 EMK-AHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADH 852
+MK +H SN+ ++ + +S + N + N S + +G N ++ +++++
Sbjct: 2426 KMKHSHNSSNNNSNNNNNSNSNNNNNNNNSNNNNNSTSNSGYNSGNNN---NYSNNSSNN 2482
Query: 853 FKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEK 895
+ + + S+N + + N + L R I K
Sbjct: 2483 NNNNNNNSFFGNNNSNNNNPFFGN--NNNNNNKLPSLDRMINK 2523
Score = 37 (18.1 bits), Expect = 2.9e-46, Sum P(4) = 2.9e-46
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 791 TDTEMKAHGESNSLRHDQSEPSSKSRRN 818
+D E+ + +S ++H + ++ S N
Sbjct: 2414 SDVEIDDYIKSKKMKHSHNSSNNNSNNN 2441
>UNIPROTKB|E1BS47 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02022009 EMBL:AADN02022010
IPI:IPI00598234 Ensembl:ENSGALT00000005903 ArrayExpress:E1BS47
Uniprot:E1BS47
Length = 1326
Score = 543 (196.2 bits), Expect = 1.9e-47, Sum P(2) = 1.9e-47
Identities = 159/465 (34%), Positives = 238/465 (51%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
W+ E W ++ + Y G++ R + E+ + KF+ ++TT+E I+
Sbjct: 217 WEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILT 275
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
D +L + W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 276 DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLH 335
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + F F L+TE++V +L IL+P MLRR
Sbjct: 336 FLEPGRFPSETTFMQEFGD---------------LKTEEQV---QKLQAILKPMMLRRLK 377
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
EDVE +L PK ++ ++ IQ Y R E + K QA V
Sbjct: 378 EDVEKNLAPKEETIIEVELTNIQKKYY---------RAILEKNFAFLSKGG-GQANVPNL 427
Query: 233 LNNRCMELRKTCNHP-LLN------YPYFSDL----SKDF----LVKSCGKLWILDRILI 277
LN MELRK CNHP L+N F + S DF ++++ GKL ++D++L
Sbjct: 428 LNTM-MELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLIDKLLP 486
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
KL+ GHRVL+FS M + LDILE+YL R+ Y RIDG R++AI F+ DSD F
Sbjct: 487 KLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPDSDRF 546
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VK IY ++ +
Sbjct: 547 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVK-IYR--LITR 603
Query: 398 ISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 438
+S+++E D+ L+ G + ++G++ ++ L + I+
Sbjct: 604 -NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE 647
Score = 42 (19.8 bits), Expect = 1.9e-47, Sum P(2) = 1.9e-47
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 562 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 594
I+T R R + + Y KE DE+ E+S+ SD
Sbjct: 742 IDTPRVR-KQTRLYSAVKE--DELMEFSDLESD 771
Score = 37 (18.1 bits), Expect = 6.5e-47, Sum P(2) = 6.5e-47
Identities = 7/39 (17%), Positives = 19/39 (48%)
Query: 433 IRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLL 471
+ N+ Y ++++ GR+ ++ T ++ T+L
Sbjct: 798 VEKNLLVYGWGRWTDILSHGRYKRQLTEQDVETICRTIL 836
>UNIPROTKB|E1BDZ3 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:DAAA02046444
IPI:IPI00705152 Ensembl:ENSBTAT00000002955 Uniprot:E1BDZ3
Length = 2900
Score = 544 (196.6 bits), Expect = 2.3e-47, Sum P(2) = 2.3e-47
Identities = 157/465 (33%), Positives = 234/465 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
W+ E W ++ + Y G+ R + E+ A +F ++TT+E I+
Sbjct: 924 WEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILG 982
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
+L+ ++W+ +IIDEA R+K++ L L + ++LLTGTPLQN
Sbjct: 983 GCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLH 1042
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + F F L+TE++V +L IL+P MLRR
Sbjct: 1043 FLEPLRFPSESTFMQEFGD---------------LKTEEQV---QKLQAILKPMMLRRLK 1084
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
EDVE L PK ++ ++ IQ Y R E + K Q V
Sbjct: 1085 EDVEKKLAPKEETIIEVELTNIQKKYY---------RAILEKNFSFLSKGA-GQTNV-PN 1133
Query: 233 LNNRCMELRKTCNHPLL--------------NY-PYFSDLSKDFLVKSCGKLWILDRILI 277
L N MELRK CNHP L Y P SD +++S GKL ++D++L
Sbjct: 1134 LVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLP 1193
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
K++ GH+VL+FS M + LDILE+YL ++ +Y RIDG R++AI F+ DSD F
Sbjct: 1194 KMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 1253
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y +V +
Sbjct: 1254 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKV-YR--LVTR 1310
Query: 398 ISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 438
+S+++E D L+ G + ++G++ +G I+ L + I+
Sbjct: 1311 -NSYEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIE 1354
Score = 51 (23.0 bits), Expect = 2.3e-47, Sum P(2) = 2.3e-47
Identities = 21/88 (23%), Positives = 38/88 (43%)
Query: 796 KAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKE 855
K ES+S SE SS S R+ S +++ S + ++G + A+
Sbjct: 2126 KRGSESSSDSDSDSERSSCSSRSSSS---SSSSSSCSHSRSGSSSSSSSSCSSASSSSSS 2182
Query: 856 SWDGKIANASGSSNFSAKMSDVIQRRCK 883
S +++S SS S + +Q+R +
Sbjct: 2183 SSSSSSSSSSSSSEESDSEEEEVQKRAE 2210
Score = 48 (22.0 bits), Expect = 4.3e-46, Sum P(3) = 4.3e-46
Identities = 17/62 (27%), Positives = 25/62 (40%)
Query: 676 SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHM---DHQQSGSWTHDRDEG 732
S S S S+ + S S+ E EE + G HM D + S + +DE
Sbjct: 2174 SSASSSSSSSSSSSSSSSSSSSEESDSEEEEVQKRAEGTPHMKAYDEESVASLSTTQDET 2233
Query: 733 ED 734
+D
Sbjct: 2234 QD 2235
Score = 43 (20.2 bits), Expect = 4.3e-46, Sum P(3) = 4.3e-46
Identities = 17/71 (23%), Positives = 31/71 (43%)
Query: 806 HDQSEPSSKSRRNLPSRKIANAPKSRASLKT-----GRLNCMPGHTEDAADHFKESWDGK 860
HDQS SK ++++ ++ K LK G P +ED A ++ + +
Sbjct: 2330 HDQSTQMSKVKKHVREKEFTVKIKDEGGLKLTFQKQGLTQRRPLDSEDCAPG-QQQYLTR 2388
Query: 861 IANASGSSNFS 871
+ + G+S S
Sbjct: 2389 LRDLQGASESS 2399
Score = 41 (19.5 bits), Expect = 2.5e-46, Sum P(2) = 2.5e-46
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 965 EVRSEARKVHDLFFDLLKIAFPDTD 989
+VR +A + H F+ LK+ P+ D
Sbjct: 1934 KVREQALR-HPQLFERLKLCHPNPD 1957
Score = 38 (18.4 bits), Expect = 5.3e-46, Sum P(2) = 5.3e-46
Identities = 19/90 (21%), Positives = 38/90 (42%)
Query: 809 SEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSS 868
S+ S S R+ S + +++ S +S R + + S +++S SS
Sbjct: 2133 SDSDSDSERSSCSSRSSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSS-SSSSSSSSSSS 2191
Query: 869 NFSAKMSDVIQRRCKNVISKLQRRIEKEGH 898
+ S++ SD + ++Q+R E H
Sbjct: 2192 SSSSEESDSEEE-------EVQKRAEGTPH 2214
>UNIPROTKB|F1MLB2 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:DAAA02028315 EMBL:DAAA02028312 EMBL:DAAA02028313
EMBL:DAAA02028314 IPI:IPI01017729 Ensembl:ENSBTAT00000027215
Uniprot:F1MLB2
Length = 2537
Score = 556 (200.8 bits), Expect = 2.3e-47, Sum P(2) = 2.3e-47
Identities = 164/456 (35%), Positives = 239/456 (52%)
Query: 19 YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES 78
Y + KD R RL A KF+ L+TT+E I+ D +L +++W+ +IIDEA R+K+R
Sbjct: 855 YEMYCKDSRGRLIP---GAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNC 911
Query: 79 VLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGP 138
L L + ++LLTGTPLQN P F + F F
Sbjct: 912 KLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGD------- 964
Query: 139 THNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAI 198
L+TE++V +L IL+P MLRR EDVE +L PK ++ ++ IQ
Sbjct: 965 --------LKTEEQV---QKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKY 1013
Query: 199 YDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP-LLN------- 250
Y R E + K + L N MELRK CNHP L+N
Sbjct: 1014 Y---------RAILEKNFSFLSKGAGHTNM--PNLLNTMMELRKCCNHPYLINAGAEEKI 1062
Query: 251 YPYFSD----LSKDF----LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEY 302
F + + DF +V+S GKL ++D++L KL+ GH+VL+FS M + LDILE+Y
Sbjct: 1063 LTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDY 1122
Query: 303 LQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD 362
L R+ +Y RIDG R++AI F+ DSD F+FLL RA G G+NL +ADT II+D
Sbjct: 1123 LIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFD 1182
Query: 363 PDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKE--DE--LRSGGTVDLEDD 418
D NP+N+ QA AR HRIGQ + VKV Y ++ + +S+++E D+ L+ G +
Sbjct: 1183 SDWNPQNDLQAQARCHRIGQSKAVKV-YR--LITR-NSYEREMFDKASLKLGLDKAVLQS 1238
Query: 419 LAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRF 454
++G+D G+I G IQQ+ ++++ G +
Sbjct: 1239 MSGRD---GNITG-----IQQFSKKEIEDLLRKGAY 1266
Score = 43 (20.2 bits), Expect = 1.0e-46, Sum P(3) = 1.0e-46
Identities = 24/127 (18%), Positives = 51/127 (40%)
Query: 715 SHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRS-IRVRPRHTVERPEERSCTDTPLHRGD 773
++M + Q+G+ + Q R S + +RP VE+P E + P
Sbjct: 1917 NYMQNHQAGAPAPSLSRCSTPLLHQQYTSRTASPLPLRPDAPVEKPPEETAAQVP----S 1972
Query: 774 SSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRAS 833
L +++++ A+ R + +R S+ + R++P K+ + S +
Sbjct: 1973 LESLTLKLEHEVVARSRPTPQ------DYDMRVAPSDTTPLVSRSVPPVKLEDEDDSDSE 2026
Query: 834 LKTGRLN 840
L +L+
Sbjct: 2027 LDLSKLS 2033
Score = 40 (19.1 bits), Expect = 2.1e-46, Sum P(3) = 2.1e-46
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 703 ELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQ 736
EL+ +++ S S S S T DE EDE+
Sbjct: 2026 ELDLSKLSPSSSSSSSSSSSSSST---DESEDEK 2056
Score = 40 (19.1 bits), Expect = 2.0e-45, Sum P(4) = 2.0e-45
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 983 IAFPDTDFREARSALSFTGPLSTSVSTPSPRQTTVGQSKRHK 1024
+ D D ++ LS P S+S S+ S ++ +S+ K
Sbjct: 2015 VKLEDEDDSDSELDLSKLSPSSSSSSSSSSSSSSTDESEDEK 2056
Score = 39 (18.8 bits), Expect = 1.0e-46, Sum P(3) = 1.0e-46
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 562 IETERKRGPKGKKYPNYKEVDDEIGEYS--EASSDER 596
I+T R R + + + K DD++ E+S E+ DER
Sbjct: 1350 IDTPRVR-KQTRHFSTLK--DDDLVEFSDLESEDDER 1383
Score = 38 (18.4 bits), Expect = 2.0e-45, Sum P(4) = 2.0e-45
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 769 LH-RGDSSLLPFQMDNKYPAQLRTDTEMKAH 798
LH RGD ++ F D PA+ E++ H
Sbjct: 1446 LHYRGDENIKGFIWDLISPAENGKTKELQNH 1476
Score = 37 (18.1 bits), Expect = 2.3e-47, Sum P(2) = 2.3e-47
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 483 DVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLR 528
+V ++E N + E + + +++D E+ R ++ WL+
Sbjct: 2252 EVECMEEPNHLDVDLETRIPVINKVDGTLLVGEDAPRRAELEMWLQ 2297
>UNIPROTKB|F1S8J5 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:FP340603 Ensembl:ENSSSCT00000002379
ArrayExpress:F1S8J5 Uniprot:F1S8J5
Length = 2569
Score = 556 (200.8 bits), Expect = 2.4e-47, Sum P(2) = 2.4e-47
Identities = 164/456 (35%), Positives = 239/456 (52%)
Query: 19 YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES 78
Y + KD R RL A KF+ L+TT+E I+ D +L +++W+ +IIDEA R+K+R
Sbjct: 902 YEMYCKDSRGRLIP---GAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNC 958
Query: 79 VLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGP 138
L L + ++LLTGTPLQN P F + F F
Sbjct: 959 KLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGD------- 1011
Query: 139 THNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAI 198
L+TE++V +L IL+P MLRR EDVE +L PK ++ ++ IQ
Sbjct: 1012 --------LKTEEQV---QKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKY 1060
Query: 199 YDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP-LLN------- 250
Y R E + K + L N MELRK CNHP L+N
Sbjct: 1061 Y---------RAILEKNFSFLSKGAGHTNM--PNLLNTMMELRKCCNHPYLINAGAEEKI 1109
Query: 251 YPYFSD----LSKDF----LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEY 302
F + + DF +V+S GKL ++D++L KL+ GH+VL+FS M + LDILE+Y
Sbjct: 1110 LTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDY 1169
Query: 303 LQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD 362
L R+ +Y RIDG R++AI F+ DSD F+FLL RA G G+NL +ADT II+D
Sbjct: 1170 LIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFD 1229
Query: 363 PDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKE--DE--LRSGGTVDLEDD 418
D NP+N+ QA AR HRIGQ + VKV Y ++ + +S+++E D+ L+ G +
Sbjct: 1230 SDWNPQNDLQAQARCHRIGQSKAVKV-YR--LITR-NSYEREMFDKASLKLGLDKAVLQS 1285
Query: 419 LAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRF 454
++G+D G+I G IQQ+ ++++ G +
Sbjct: 1286 MSGRD---GNITG-----IQQFSKKEIEDLLRKGAY 1313
Score = 44 (20.5 bits), Expect = 8.6e-47, Sum P(3) = 8.6e-47
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 703 ELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRS 747
EL+ +++ S S S S T DE EDE+ + R RS
Sbjct: 2073 ELDLSKLSPSSSSSSSSSSSSSST---DESEDEKEEKLTADRSRS 2114
Score = 43 (20.2 bits), Expect = 1.1e-46, Sum P(3) = 1.1e-46
Identities = 24/127 (18%), Positives = 51/127 (40%)
Query: 715 SHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRS-IRVRPRHTVERPEERSCTDTPLHRGD 773
++M + Q+G+ + Q R S + +RP VE+P E + P
Sbjct: 1964 NYMQNHQAGAPAPSLSRCSTPLLHQQYTSRTASPLPLRPDAPVEKPPEETAAQVP----S 2019
Query: 774 SSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRAS 833
L +++++ A+ R + +R S+ + R++P K+ + S +
Sbjct: 2020 LESLTLKLEHEVVARSRPTPQ------DYEMRVAPSDTTPLVSRSVPPVKLEDEDDSDSE 2073
Query: 834 LKTGRLN 840
L +L+
Sbjct: 2074 LDLSKLS 2080
Score = 40 (19.1 bits), Expect = 2.2e-45, Sum P(4) = 2.2e-45
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 983 IAFPDTDFREARSALSFTGPLSTSVSTPSPRQTTVGQSKRHK 1024
+ D D ++ LS P S+S S+ S ++ +S+ K
Sbjct: 2062 VKLEDEDDSDSELDLSKLSPSSSSSSSSSSSSSSTDESEDEK 2103
Score = 39 (18.8 bits), Expect = 8.6e-47, Sum P(3) = 8.6e-47
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 562 IETERKRGPKGKKYPNYKEVDDEIGEYS--EASSDER 596
I+T R R + + + K DD++ E+S E+ DER
Sbjct: 1397 IDTPRVR-KQTRHFSTLK--DDDLVEFSDLESEDDER 1430
Score = 38 (18.4 bits), Expect = 2.2e-45, Sum P(4) = 2.2e-45
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 769 LH-RGDSSLLPFQMDNKYPAQLRTDTEMKAH 798
LH RGD ++ F D PA+ E++ H
Sbjct: 1493 LHYRGDENIKGFIWDLISPAENGKTKELQNH 1523
Score = 37 (18.1 bits), Expect = 2.4e-47, Sum P(2) = 2.4e-47
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 483 DVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLR 528
+V ++E N + E + + +++D E+ R ++ WL+
Sbjct: 2299 EVECMEEPNHLDVDLETRIPVINKVDGTLLVGEDAPRRAELEMWLQ 2344
>UNIPROTKB|B5DE69 [details] [associations]
symbol:chd8 "Chromodomain-helicase-DNA-binding protein 8"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
evidence=ISS] [GO:0071339 "MLL1 complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0016055 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG107676 CTD:57680
KO:K04494 EMBL:BC168549 RefSeq:NP_001131089.2 UniGene:Str.42730
GeneID:100192376 KEGG:xtr:100192376 Xenbase:XB-GENE-966847
Uniprot:B5DE69
Length = 2184
Score = 548 (198.0 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 161/466 (34%), Positives = 238/466 (51%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
W+ E W ++ I Y G+ R + E+ A KF+ L+TT+E ++
Sbjct: 818 WEREFGSWT-QMNTIVYHGSLASRQMIQQYEMYCKDSKGRLIPGAYKFDALITTFEMVLS 876
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
D +L +++W+ +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 877 DCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLH 936
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + F F L+TE++V +L IL+P MLRR
Sbjct: 937 FLEPTQFSSEAEFLKDFGD---------------LKTEEQV---QKLQAILKPMMLRRLK 978
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
EDVE +L PK ++ ++ IQ Y I + K Q N
Sbjct: 979 EDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLT----KGASQSNT-------PN 1027
Query: 233 LNNRCMELRKTCNHPLL----NYPYFSDLSK-------DF----LVKSCGKLWILDRILI 277
L N MELRK CNHP L S+ + DF +V+S GKL ++D++L
Sbjct: 1028 LLNTMMELRKCCNHPYLITGAEEKIISEFREATPVVPPDFHVQAMVRSSGKLVLIDKLLP 1087
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
KL+ GH+VL+FS M + LDILE+YL R+ +Y RIDG R++AI F+ DSD F
Sbjct: 1088 KLRAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNMRQAAIDRFSRPDSDRF 1147
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VK IY ++ +
Sbjct: 1148 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVK-IYR--LITR 1204
Query: 398 ISSHQKE--DE--LRSGGTVDLEDDLAGKDRYI-GSIEGLIRNNIQ 438
+S+++E D+ L+ G + ++G+D ++ G I+ + I+
Sbjct: 1205 -NSYEREMFDKASLKLGLDKAVLQSMSGRDNHLSGPIQQFTKKEIE 1249
Score = 42 (19.8 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 562 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSDE 595
I+T R R K+ ++ DD++ E+S+ SD+
Sbjct: 1341 IDTPRIR----KQTRHFTNKDDDMVEFSDLESDD 1370
Score = 40 (19.1 bits), Expect = 5.4e-47, Sum P(2) = 5.4e-47
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 589 SEASSDERNGYPVQ 602
SE SSDE NG V+
Sbjct: 1960 SEDSSDESNGVKVK 1973
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 334 (122.6 bits), Expect = 4.7e-47, Sum P(4) = 4.7e-47
Identities = 73/209 (34%), Positives = 110/209 (52%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
M W+ EL +W PS + Y GA+ +R F+V +T+Y+ ++ D +
Sbjct: 689 MLNWEMELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVLQDHQAFRRK 748
Query: 61 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFD 120
+W+Y+I+DEAQ +K+ +S + L + QRRLLLTGTPLQN P VF
Sbjct: 749 NWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQ 808
Query: 121 NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP 180
+ + F +WFS P G + + + E ++ RLH++L PF+LRR DVE +P
Sbjct: 809 SHREFKEWFSNPLT--GMIEGSQE-YNEG-----LVKRLHKVLRPFLLRRVKVDVEKQMP 860
Query: 181 PKVSIVLRCRMSAIQSAIYDWIKATGTLR 209
K V+RCR+S Q +YD A T +
Sbjct: 861 KKYEHVIRCRLSKRQRCLYDDFMAQTTTK 889
Score = 288 (106.4 bits), Expect = 4.7e-47, Sum P(4) = 4.7e-47
Identities = 67/166 (40%), Positives = 103/166 (62%)
Query: 254 FSDLSKDFLVKSC-GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 312
F DL + C GKL L +L +L+ GHRVL+F+ MT++LD+LE++L + +Y R
Sbjct: 2019 FPDLR--LIQYDCAGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLR 2076
Query: 313 IDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQ 372
+DG+T +E R++ + FN+ D F F+LS R+ G G+NL ADTV+ YD D NP + Q
Sbjct: 2077 LDGSTRVEQRQALMERFNA-DKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQ 2135
Query: 373 AVARAHRIGQKREVKV--IYMEAVVDKISSHQKEDELRSGGTVDLE 416
A R HRIGQ R+V + + E V++ + +K ++ R G + +E
Sbjct: 2136 AQDRCHRIGQTRDVHIYRLISERTVEE-NILKKANQKRMLGDMAIE 2180
Score = 137 (53.3 bits), Expect = 1.4e-26, Sum P(4) = 1.4e-26
Identities = 36/98 (36%), Positives = 50/98 (51%)
Query: 155 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 214
++ RLH++L PF+LRR DVE +P K V+RCR+S Q +YD A T
Sbjct: 835 LVKRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTT------ 888
Query: 215 EKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 252
K + + ++ N M+LRK CNHP L P
Sbjct: 889 ------KETLATGH-FMSVINILMQLRKVCNHPNLFDP 919
Score = 43 (20.2 bits), Expect = 4.7e-47, Sum P(4) = 4.7e-47
Identities = 17/64 (26%), Positives = 27/64 (42%)
Query: 527 LRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIG 586
+RA+T+ +A L++ F N G +GE E + GP G + + EI
Sbjct: 2242 IRAATQAKAEQVAELAE-------FNENEGFPAGEGEEASRPGP-GAEDEEMSRAEQEIA 2293
Query: 587 EYSE 590
E
Sbjct: 2294 ALVE 2297
Score = 42 (19.8 bits), Expect = 6.0e-47, Sum P(4) = 6.0e-47
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 689 LEARPGSLSKRMPDELEEGEIAVSGDSHMDHQ 720
LE PGS +P+E EE +A S +H+ Q
Sbjct: 2202 LEEPPGSSVSSVPEE-EEETVA-SKQTHILEQ 2231
Score = 41 (19.5 bits), Expect = 4.7e-47, Sum P(4) = 4.7e-47
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 803 SLRHDQSEPSSKSRRNLPS-RKIANAPKSRASLKTGRLNCMPG 844
+++ + P K+R + R + AP S + KT ++ +PG
Sbjct: 2815 AVKRRRGRPPKKNRSPADAGRGVDEAPSSISKGKTNGVDPIPG 2857
Score = 41 (19.5 bits), Expect = 9.2e-21, Sum P(4) = 9.2e-21
Identities = 15/69 (21%), Positives = 37/69 (53%)
Query: 877 VIQRRCKN---VISKLQRRIEKEGHQIVPLLTDLWKRIET-SGYVSGAGNNILDL---RK 929
+IQ C ++ L R+++ EGH+++ + T + + ++ +++ G+ L L +
Sbjct: 2024 LIQYDCAGKLQTLAVLLRQLKAEGHRVL-IFTQMTRMLDVLEQFLTYHGHLYLRLDGSTR 2082
Query: 930 IDQRVDRLE 938
++QR +E
Sbjct: 2083 VEQRQALME 2091
Score = 38 (18.4 bits), Expect = 9.2e-21, Sum P(4) = 9.2e-21
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 811 PSSKSRRNLPSRKIANAPKS 830
P S S LPS + +AP S
Sbjct: 1626 PPSMSGAPLPSSTLVSAPTS 1645
Score = 37 (18.1 bits), Expect = 1.2e-46, Sum P(4) = 1.2e-46
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 722 SGSWTHDRDEGEDEQVLQPKIKRKR 746
+G + + EG + P +KR+R
Sbjct: 2796 TGGGSPENGEGAKLAITPPAVKRRR 2820
Score = 37 (18.1 bits), Expect = 2.9e-21, Sum P(4) = 2.9e-21
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 362 DPDPNPKNEEQAVARAHRIGQKREVKVI 389
DP P PK + V R + K+E + +
Sbjct: 992 DPPPRPKPVKMKVNRMLQPVPKQEGRTV 1019
Score = 37 (18.1 bits), Expect = 2.4e-20, Sum P(4) = 2.4e-20
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 995 SALSFTGPLSTSVSTPSPR 1013
+A SF+GP P PR
Sbjct: 1850 TATSFSGPRPRRQPPPPPR 1868
>ZFIN|ZDB-GENE-030131-6320 [details] [associations]
symbol:chd8 "chromodomain helicase DNA binding
protein 8" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0071339 "MLL1 complex" evidence=ISS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
ZFIN:ZDB-GENE-030131-6320 GO:GO:0005524 GO:GO:0006355 GO:GO:0016055
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 EMBL:AL928674 IPI:IPI00919855
UniGene:Dr.81397 PRIDE:B0R0I6 HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC
Uniprot:B0R0I6
Length = 2511
Score = 553 (199.7 bits), Expect = 4.7e-47, Sum P(2) = 4.7e-47
Identities = 160/478 (33%), Positives = 237/478 (49%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
W+ E W ++ I Y G+ R + E+ A KF+ L+TT+E I+
Sbjct: 910 WEREFSNWT-DMNAIVYHGSLASRQMIQQYEMYCKDDKGHLIPGAYKFDALITTFEMILS 968
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
D +L ++ W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 969 DCPELREISWRCVVIDEAHRLKNRNCKLLDSLKMLEIEHKVLLTGTPLQNTVEELFSLLH 1028
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + F F L+TE++V +L IL+P MLRR
Sbjct: 1029 FLEPAQFPSEIEFLREFGD---------------LKTEEQV---QKLQSILKPMMLRRLK 1070
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
EDVE +L PK ++ ++ +Q Y R E + + V
Sbjct: 1071 EDVEKNLAPKQETIIEVELTDVQKKYY---------RAILERNFSFLSMGATQNSNVPNL 1121
Query: 233 LNNRCMELRKTCNHPLLNY-----------PYFSDLSKDF----LVKSCGKLWILDRILI 277
LN MELRK CNHP L + L+ DF LV+S GKL +LD++L
Sbjct: 1122 LNTM-MELRKCCNHPYLITGAEEKIVSELREVYDPLAPDFHLQALVRSAGKLVLLDKLLP 1180
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
+L+ GH+VL+FS M + LDILE+YL ++ +Y RIDG R++AI F+ DSD F
Sbjct: 1181 RLKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 1240
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397
+FLL RA G G+NL +ADT +I+D D NP+N+ QA AR HRIGQ + VKV +
Sbjct: 1241 VFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRL------ 1294
Query: 398 ISSHQKEDELRSGGTVDLEDDLAGKDRYI-GSIEGLIRNNIQQYKIDMADEVINAGRF 454
I+ + E E+ ++ L G DR + S+ G ++IQQ+ ++++ G +
Sbjct: 1295 ITRNSYEREMLDKASLKL-----GLDRAVLQSMSGNKESSIQQFSKKEIEDLLRKGAY 1347
Score = 37 (18.1 bits), Expect = 4.7e-47, Sum P(2) = 4.7e-47
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 712 SGDSHMDHQQSGSWTHDRDEGEDEQVLQP 740
SGDS ++ +Q+ D DE L P
Sbjct: 2127 SGDSDVEREQAALKMCDGDEENSILSLTP 2155
Score = 37 (18.1 bits), Expect = 4.7e-47, Sum P(2) = 4.7e-47
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 788 QLRTDTEMKAHG-ESNSLRHDQSEPSSKSRRNLPSRK 823
Q R + ++ G + + L D P SR++ SR+
Sbjct: 1439 QTRQFSSLRGEGGDLSDLDSDDDYPPHNSRQSRASRR 1475
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 302 (111.4 bits), Expect = 4.8e-47, Sum P(3) = 4.8e-47
Identities = 64/130 (49%), Positives = 84/130 (64%)
Query: 259 KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 318
K L CGKL +LDR+L L GHRVL+F+ MTK+LDILE++L Y R+DG T
Sbjct: 983 KRLLQYDCGKLQVLDRLLKDLVSNGHRVLIFTQMTKVLDILEQFLNIHGHRYLRLDGATK 1042
Query: 319 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 378
+E R+ FN+ D +F+LS R+ G G+NL ADTVI YD D NP+ + QA R+H
Sbjct: 1043 IEQRQILTERFNNDDK-IPVFILSTRSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSH 1101
Query: 379 RIGQKREVKV 388
RIGQ R+V +
Sbjct: 1102 RIGQTRDVHI 1111
Score = 292 (107.8 bits), Expect = 4.8e-47, Sum P(3) = 4.8e-47
Identities = 78/260 (30%), Positives = 122/260 (46%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
M W+ E K+LP + Y G +R S ++V +T+Y+ ++ D +
Sbjct: 508 MLNWEMEFKKFLPGFKILTYYGNPQERKEKRSGWYKPDTWHVCITSYQLVLQDHQPFRRK 567
Query: 61 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXP---- 116
W+Y+I+DEA +K+ S + L + + RLLLTGTPLQN+ P
Sbjct: 568 KWQYMILDEAHNIKNFRSQRWQSLLNFNAEHRLLLTGTPLQNNLVELWSLLYFLMPAGVT 627
Query: 117 ---EVFDNRKAFHDWFSQPFQK---EGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 170
F N K F DWFS+P + EG N + + T + +LH++L P++LRR
Sbjct: 628 QNNSAFANLKDFQDWFSKPMDRLIEEGQDMNPEA--MNT------VAKLHRVLRPYLLRR 679
Query: 171 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVY 230
+VE +P K V+ C++S Q +YD D R + I + +
Sbjct: 680 LKTEVEKQMPAKYEHVVYCQLSKRQRFLYD-------------DFINRARTREILASGNF 726
Query: 231 KTLNNRCMELRKTCNHPLLN 250
++ N M+LRK CNHP L+
Sbjct: 727 MSIINCLMQLRKVCNHPNLH 746
Score = 47 (21.6 bits), Expect = 4.8e-47, Sum P(3) = 4.8e-47
Identities = 17/81 (20%), Positives = 32/81 (39%)
Query: 436 NIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIA 495
++Q ++ + + F + +T + T L + D S +E +
Sbjct: 1195 DVQAAQVARKESALEQTEFSETSTPQAMLTKDSTPLSSDSATPGFERD--STEEQSNTND 1252
Query: 496 RSEDEVELFDQMDEEFGWIEE 516
ED EL + +DE G I+E
Sbjct: 1253 MDEDRSELEEDLDETVGHIDE 1273
>UNIPROTKB|F1PWD8 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 OMA:TFGVIFD EMBL:AAEX03015818
EMBL:AAEX03015819 EMBL:AAEX03015820 Ensembl:ENSCAFT00000011497
GeneTree:ENSGT00700000105087 Uniprot:F1PWD8
Length = 2994
Score = 552 (199.4 bits), Expect = 6.0e-47, Sum P(2) = 6.0e-47
Identities = 160/465 (34%), Positives = 239/465 (51%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
W+ E W ++ + Y G++ R + S E+ + KF+ ++TT+E I+
Sbjct: 1030 WEREFRTWT-ELNVVVYHGSQASRRTIQSYEMYFKDPQGRVIKGSYKFHAIITTFEMILT 1088
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
D +L + W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 1089 DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLH 1148
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + F F L+TE++V +L IL+P MLRR
Sbjct: 1149 FLEPSRFPSETTFMQEFGD---------------LKTEEQV---QKLQAILKPMMLRRLK 1190
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
EDVE +L PK ++ ++ IQ Y R E + K QA V
Sbjct: 1191 EDVEKNLAPKEETIIEVELTNIQKKYY---------RAILEKNFTFLSKGG-GQANVPNL 1240
Query: 233 LNNRCMELRKTCNHP-LLN------YPYFSDL----SKDF----LVKSCGKLWILDRILI 277
LN MELRK CNHP L+N F + S DF ++++ GKL ++D++L
Sbjct: 1241 LNTM-MELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLIDKLLP 1299
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
KL+ GHRVL+FS M + LDILE+YL R+ Y RIDG R++AI F+ DSD F
Sbjct: 1300 KLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRF 1359
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VK IY ++ +
Sbjct: 1360 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVK-IYR--LITR 1416
Query: 398 ISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 438
+S+++E D+ L+ G + ++G++ ++ L + I+
Sbjct: 1417 -NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE 1460
Score = 49 (22.3 bits), Expect = 6.5e-47, Sum P(3) = 6.5e-47
Identities = 29/118 (24%), Positives = 42/118 (35%)
Query: 617 SGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEAXXXXXXXXXRRLTQIVS 676
SG+V K + +ED +GG E EA +T
Sbjct: 2177 SGSVAT--QEKTEGKEDDEEVDGG-------EKDSKQGCEAEAGSVRSELKGMEVTADTG 2227
Query: 677 PVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGED 734
P S + GS E + K +E + E AVS + D + + S + RDE D
Sbjct: 2228 PKSISEKGSEEDEEEKLEDDDKS--EESSQLEGAVSRGKNFDEESNASMSTARDETRD 2283
Score = 42 (19.8 bits), Expect = 6.5e-47, Sum P(3) = 6.5e-47
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 562 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 594
I+T R R + + Y KE DE+ E+S+ SD
Sbjct: 1552 IDTPRVR-KQTRLYSAVKE--DELMEFSDLESD 1581
Score = 41 (19.5 bits), Expect = 1.4e-44, Sum P(4) = 1.4e-44
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 683 FGSLSALEARPGSLSKRMPDELEEG 707
F +L+ L+ GS ++ PD+ E G
Sbjct: 2918 FPALAGLQNAVGSGEEKAPDKAEGG 2942
Score = 39 (18.8 bits), Expect = 6.0e-47, Sum P(2) = 6.0e-47
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 399 SSHQKEDELRSGGTVDLEDDLAGKD 423
S +K + GG E++L G D
Sbjct: 2930 SGEEKAPDKAEGGAFQEEENLEGSD 2954
Score = 39 (18.8 bits), Expect = 2.0e-45, Sum P(4) = 2.0e-45
Identities = 21/87 (24%), Positives = 35/87 (40%)
Query: 397 KISSHQKEDELRSGGTVDLEDDLAGK---------DRYIGSIEG---LIRNNIQQYKIDM 444
++ S KEDEL DLE D K DR G + N+ Y
Sbjct: 1562 RLYSAVKEDELMEFS--DLESDSEEKPCTKPRRPQDRSQGYARSECFRVEKNLLVYGWGR 1619
Query: 445 ADEVINAGRFDQRTTHEERRMTLETLL 471
++++ GR+ ++ T ++ T+L
Sbjct: 1620 WTDILSHGRYKRQLTEQDVETICRTIL 1646
Score = 37 (18.1 bits), Expect = 2.0e-45, Sum P(4) = 2.0e-45
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 503 LFDQMDEEFGW 513
+FD M ++F W
Sbjct: 1983 IFDPMKQQFDW 1993
>UNIPROTKB|E2QUS7 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:FLAYMED EMBL:AAEX03009852
Ensembl:ENSCAFT00000009065 Uniprot:E2QUS7
Length = 2586
Score = 556 (200.8 bits), Expect = 6.3e-47, Sum P(4) = 6.3e-47
Identities = 164/456 (35%), Positives = 239/456 (52%)
Query: 19 YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES 78
Y + KD R RL A KF+ L+TT+E I+ D +L +++W+ +IIDEA R+K+R
Sbjct: 902 YEMYCKDSRGRLIP---GAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNC 958
Query: 79 VLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGP 138
L L + ++LLTGTPLQN P F + F F
Sbjct: 959 KLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGD------- 1011
Query: 139 THNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAI 198
L+TE++V +L IL+P MLRR EDVE +L PK ++ ++ IQ
Sbjct: 1012 --------LKTEEQV---QKLQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKY 1060
Query: 199 YDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP-LLN------- 250
Y R E + K + L N MELRK CNHP L+N
Sbjct: 1061 Y---------RAILEKNFSFLSKGAGHTNM--PNLLNTMMELRKCCNHPYLINAGAEEKI 1109
Query: 251 YPYFSD----LSKDF----LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEY 302
F + + DF +V+S GKL ++D++L KL+ GH+VL+FS M + LDILE+Y
Sbjct: 1110 LTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDY 1169
Query: 303 LQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD 362
L R+ +Y RIDG R++AI F+ DSD F+FLL RA G G+NL +ADT II+D
Sbjct: 1170 LIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFD 1229
Query: 363 PDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKE--DE--LRSGGTVDLEDD 418
D NP+N+ QA AR HRIGQ + VKV Y ++ + +S+++E D+ L+ G +
Sbjct: 1230 SDWNPQNDLQAQARCHRIGQSKAVKV-YR--LITR-NSYEREMFDKASLKLGLDKAVLQS 1285
Query: 419 LAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRF 454
++G+D G+I G IQQ+ ++++ G +
Sbjct: 1286 MSGRD---GNITG-----IQQFSKKEIEDLLRKGAY 1313
Score = 51 (23.0 bits), Expect = 6.3e-47, Sum P(4) = 6.3e-47
Identities = 40/204 (19%), Positives = 78/204 (38%)
Query: 715 SHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRS-IRVRPRHTVERPEERSCTDTPLHRGD 773
++M + Q+G+ + Q R S + +RP VE+P E + P
Sbjct: 1966 NYMQNHQAGAPAPSLSRCSTPLLHQQYTSRTASPLPLRPDAPVEKPPEETAAQVP----S 2021
Query: 774 SSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRAS 833
L +++++ A+ R + +R S+ + RN+P K+ + S +
Sbjct: 2022 LESLTLKLEHEVVARSRPTPQ------DYEMRVAPSDTTPLVSRNVPPVKLEDEDDSDSE 2075
Query: 834 LKTGRLN---CMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQ 890
L +L+ + ++ ES D K S + S K+ D + ++
Sbjct: 2076 LDLSKLSPSSSSSSSSSSSSSSTDESEDEKEEKLSADRSRS-KLYD--EESLLSLTMSQD 2132
Query: 891 RRIEKEGHQIVPLLTDLWKRIETS 914
++G Q+ P L L +R S
Sbjct: 2133 GFPNEDGEQMTPELLLLQERQRAS 2156
Score = 46 (21.3 bits), Expect = 2.1e-46, Sum P(4) = 2.1e-46
Identities = 34/185 (18%), Positives = 71/185 (38%)
Query: 747 SIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRH 806
S+ ++ H V + D + S P N P +L + + + + + L
Sbjct: 2024 SLTLKLEHEVVARSRPTPQDYEMRVAPSDTTPLVSRNVPPVKLEDEDDSDSELDLSKLSP 2083
Query: 807 DQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASG 866
S SS S + + + + + + S R + E++ S DG N G
Sbjct: 2084 SSSSSSSSSSSSSSTDESEDEKEEKLSADRSRSKL---YDEESLLSLTMSQDG-FPNEDG 2139
Query: 867 SSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLW---KRIE--TSGYVSGAG 921
+ ++ + +R+ + K + I + +L+ W +R + +G + G G
Sbjct: 2140 EQ-MTPELLLLQERQRASEWPKDRVLINRIDFVCQAVLSGKWPSSRRSQEMVTGGILGPG 2198
Query: 922 NNILD 926
N++LD
Sbjct: 2199 NHLLD 2203
Score = 45 (20.9 bits), Expect = 2.6e-46, Sum P(4) = 2.6e-46
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 703 ELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRS 747
EL+ +++ S S S S T DE EDE+ + R RS
Sbjct: 2075 ELDLSKLSPSSSSSSSSSSSSSST---DESEDEKEEKLSADRSRS 2116
Score = 42 (19.8 bits), Expect = 6.3e-47, Sum P(4) = 6.3e-47
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 1146 QPAQPANGGSGAVGW-ANPV-KR-----LRTDAGKRRPSQL 1179
+PAQ AN +G G A V R + TD+GK+R ++
Sbjct: 2386 EPAQTANSRNGKKGHHAETVFNRVLPGPIATDSGKKRARRM 2426
Score = 40 (19.1 bits), Expect = 4.2e-45, Sum P(5) = 4.2e-45
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 983 IAFPDTDFREARSALSFTGPLSTSVSTPSPRQTTVGQSKRHK 1024
+ D D ++ LS P S+S S+ S ++ +S+ K
Sbjct: 2064 VKLEDEDDSDSELDLSKLSPSSSSSSSSSSSSSSTDESEDEK 2105
Score = 39 (18.8 bits), Expect = 6.3e-47, Sum P(4) = 6.3e-47
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 562 IETERKRGPKGKKYPNYKEVDDEIGEYS--EASSDER 596
I+T R R + + + K DD++ E+S E+ DER
Sbjct: 1397 IDTPRVR-KQTRHFSTLK--DDDLVEFSDLESEDDER 1430
Score = 38 (18.4 bits), Expect = 4.2e-45, Sum P(5) = 4.2e-45
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 769 LH-RGDSSLLPFQMDNKYPAQLRTDTEMKAH 798
LH RGD ++ F D PA+ E++ H
Sbjct: 1493 LHYRGDENIKGFIWDLISPAENGKTKELQNH 1523
Score = 37 (18.1 bits), Expect = 2.3e-46, Sum P(3) = 2.3e-46
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 483 DVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLR 528
+V ++E N + E + + +++D E+ R ++ WL+
Sbjct: 2301 EVQCMEEPNHLDVDLETRIPVINKVDGTLLVGEDAPRRAELEMWLQ 2346
>UNIPROTKB|E2QUR1 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AAEX03009852
Ensembl:ENSCAFT00000009072 Uniprot:E2QUR1
Length = 2200
Score = 552 (199.4 bits), Expect = 6.9e-47, Sum P(4) = 6.9e-47
Identities = 166/481 (34%), Positives = 247/481 (51%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
W+ E + W ++ I Y G+ R + E+ A KF+ L+TT+E I+
Sbjct: 491 WEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILS 549
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
D +L +++W+ +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 550 DCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLH 609
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + F F L+TE++V +L IL+P MLRR
Sbjct: 610 FLEPSQFPSESEFLKDFGD---------------LKTEEQV---QKLQAILKPMMLRRLK 651
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
EDVE +L PK ++ ++ IQ Y R E + K +
Sbjct: 652 EDVEKNLAPKQETIIEVELTNIQKKYY---------RAILEKNFSFLSKGAGHTNM--PN 700
Query: 233 LNNRCMELRKTCNHP-LLN------YPYFSD----LSKDF----LVKSCGKLWILDRILI 277
L N MELRK CNHP L+N F + + DF +V+S GKL ++D++L
Sbjct: 701 LLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLP 760
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
KL+ GH+VL+FS M + LDILE+YL R+ +Y RIDG R++AI F+ DSD F
Sbjct: 761 KLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 820
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y ++ +
Sbjct: 821 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV-YR--LITR 877
Query: 398 ISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGR 453
+S+++E D+ L+ G + ++G+D G+I G IQQ+ ++++ G
Sbjct: 878 -NSYEREMFDKASLKLGLDKAVLQSMSGRD---GNITG-----IQQFSKKEIEDLLRKGA 928
Query: 454 F 454
+
Sbjct: 929 Y 929
Score = 51 (23.0 bits), Expect = 6.9e-47, Sum P(4) = 6.9e-47
Identities = 40/204 (19%), Positives = 78/204 (38%)
Query: 715 SHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRS-IRVRPRHTVERPEERSCTDTPLHRGD 773
++M + Q+G+ + Q R S + +RP VE+P E + P
Sbjct: 1580 NYMQNHQAGAPAPSLSRCSTPLLHQQYTSRTASPLPLRPDAPVEKPPEETAAQVP----S 1635
Query: 774 SSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRAS 833
L +++++ A+ R + +R S+ + RN+P K+ + S +
Sbjct: 1636 LESLTLKLEHEVVARSRPTPQ------DYEMRVAPSDTTPLVSRNVPPVKLEDEDDSDSE 1689
Query: 834 LKTGRLN---CMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQ 890
L +L+ + ++ ES D K S + S K+ D + ++
Sbjct: 1690 LDLSKLSPSSSSSSSSSSSSSSTDESEDEKEEKLSADRSRS-KLYD--EESLLSLTMSQD 1746
Query: 891 RRIEKEGHQIVPLLTDLWKRIETS 914
++G Q+ P L L +R S
Sbjct: 1747 GFPNEDGEQMTPELLLLQERQRAS 1770
Score = 46 (21.3 bits), Expect = 2.3e-46, Sum P(4) = 2.3e-46
Identities = 34/185 (18%), Positives = 71/185 (38%)
Query: 747 SIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRH 806
S+ ++ H V + D + S P N P +L + + + + + L
Sbjct: 1638 SLTLKLEHEVVARSRPTPQDYEMRVAPSDTTPLVSRNVPPVKLEDEDDSDSELDLSKLSP 1697
Query: 807 DQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASG 866
S SS S + + + + + + S R + E++ S DG N G
Sbjct: 1698 SSSSSSSSSSSSSSTDESEDEKEEKLSADRSRSKL---YDEESLLSLTMSQDG-FPNEDG 1753
Query: 867 SSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLW---KRIE--TSGYVSGAG 921
+ ++ + +R+ + K + I + +L+ W +R + +G + G G
Sbjct: 1754 EQ-MTPELLLLQERQRASEWPKDRVLINRIDFVCQAVLSGKWPSSRRSQEMVTGGILGPG 1812
Query: 922 NNILD 926
N++LD
Sbjct: 1813 NHLLD 1817
Score = 45 (20.9 bits), Expect = 2.9e-46, Sum P(4) = 2.9e-46
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 703 ELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRS 747
EL+ +++ S S S S T DE EDE+ + R RS
Sbjct: 1689 ELDLSKLSPSSSSSSSSSSSSSST---DESEDEKEEKLSADRSRS 1730
Score = 42 (19.8 bits), Expect = 6.9e-47, Sum P(4) = 6.9e-47
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 1146 QPAQPANGGSGAVGW-ANPV-KR-----LRTDAGKRRPSQL 1179
+PAQ AN +G G A V R + TD+GK+R ++
Sbjct: 2000 EPAQTANSRNGKKGHHAETVFNRVLPGPIATDSGKKRARRM 2040
Score = 40 (19.1 bits), Expect = 3.8e-45, Sum P(5) = 3.8e-45
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 983 IAFPDTDFREARSALSFTGPLSTSVSTPSPRQTTVGQSKRHK 1024
+ D D ++ LS P S+S S+ S ++ +S+ K
Sbjct: 1678 VKLEDEDDSDSELDLSKLSPSSSSSSSSSSSSSSTDESEDEK 1719
Score = 39 (18.8 bits), Expect = 6.9e-47, Sum P(4) = 6.9e-47
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 562 IETERKRGPKGKKYPNYKEVDDEIGEYS--EASSDER 596
I+T R R + + + K DD++ E+S E+ DER
Sbjct: 1013 IDTPRVR-KQTRHFSTLK--DDDLVEFSDLESEDDER 1046
Score = 39 (18.8 bits), Expect = 6.9e-47, Sum P(4) = 6.9e-47
Identities = 23/101 (22%), Positives = 45/101 (44%)
Query: 403 KEDELRSGGTVDLEDDLAGK----DRY--IGSIEGL-IRNNIQQYKIDMADEVINAGRFD 455
K+D+L ++ EDD + DR+ G + + ++ Y ++++ GRF
Sbjct: 1029 KDDDLVEFSDLESEDDERPRSRRHDRHHTYGRTDCFRVEKHLLVYGWGRWRDILSHGRFK 1088
Query: 456 QRTTHEE-----RRMTLETLLH--DEERYQETVHDVPSLQE 489
+R T + R + + LLH +E + + D+ S E
Sbjct: 1089 RRMTERDVETICRAILVYCLLHYRGDENIKGFIWDLISPAE 1129
Score = 38 (18.4 bits), Expect = 3.8e-45, Sum P(5) = 3.8e-45
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 769 LH-RGDSSLLPFQMDNKYPAQLRTDTEMKAH 798
LH RGD ++ F D PA+ E++ H
Sbjct: 1109 LHYRGDENIKGFIWDLISPAENGKTKELQNH 1139
Score = 37 (18.1 bits), Expect = 1.9e-45, Sum P(4) = 1.9e-45
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 483 DVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLR 528
+V ++E N + E + + +++D E+ R ++ WL+
Sbjct: 1915 EVQCMEEPNHLDVDLETRIPVINKVDGTLLVGEDAPRRAELEMWLQ 1960
>WB|WBGene00000482 [details] [associations]
symbol:chd-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=TAS]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0046580 "negative regulation of Ras protein
signal transduction" evidence=IMP] [GO:0001709 "cell fate
determination" evidence=IMP] [GO:0000118 "histone deacetylase
complex" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=TAS] [GO:0003678 "DNA helicase activity" evidence=ISS]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003682 GO:GO:0006338
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0001709 GO:GO:0046580 GO:GO:0008026 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0000118 GeneTree:ENSGT00560000076896
EMBL:AF308444 EMBL:Z67884 EMBL:Z67881 PIR:T20160 RefSeq:NP_510140.1
UniGene:Cel.16950 ProteinModelPortal:Q22516 SMR:Q22516
STRING:Q22516 PaxDb:Q22516 EnsemblMetazoa:T14G8.1 GeneID:181421
KEGG:cel:CELE_T14G8.1 UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1
HOGENOM:HOG000231124 InParanoid:Q22516 OMA:INIIMEL NextBio:913870
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
Uniprot:Q22516
Length = 1787
Score = 400 (145.9 bits), Expect = 1.2e-46, Sum P(5) = 1.2e-46
Identities = 103/263 (39%), Positives = 146/263 (55%)
Query: 156 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 215
I +LH +L P MLRR DV +P K +++R +SA+Q Y K T D +
Sbjct: 833 IEKLHNLLGPHMLRRLKADVLTGMPSKQELIVRVELSAMQKKYY---KNILTRNFDALNV 889
Query: 216 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSK--------DFLVKSCG 267
K +L N MEL+K CNHP L + K L+K+ G
Sbjct: 890 KN---------GGTQMSLINIIMELKKCCNHPYLFMKACLEAPKLKNGMYEGSALIKNAG 940
Query: 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 327
K +L ++L KL+ GHRVL+FS MT +LDILE++ Y RIDG+ + + R+ AI
Sbjct: 941 KFVLLQKMLRKLKDGGHRVLIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQDAID 1000
Query: 328 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 387
+N+ + F+FLLS RA G G+NL +ADTVIIYD D NP N+ QA +RAHR+GQK +V
Sbjct: 1001 RYNAPGAKQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVM 1060
Query: 388 V---IYMEAVVDKISSHQKEDEL 407
+ + +V ++I+S K+ L
Sbjct: 1061 IYRFVTKGSVEERITSVAKKKML 1083
Score = 194 (73.4 bits), Expect = 1.2e-46, Sum P(5) = 1.2e-46
Identities = 40/99 (40%), Positives = 61/99 (61%)
Query: 38 LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTG 97
LKF+VL+T+YE I D++ LS +DW +++DEA R+K+ +S ++L Y Q R+LLTG
Sbjct: 733 LKFHVLLTSYECINMDKAILSSIDWAALVVDEAHRLKNNQSTFFKNLREYNIQYRVLLTG 792
Query: 98 TPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKE 136
TPLQN+ P+ F+ ++F FS+ KE
Sbjct: 793 TPLQNNLEELFHLLNFLAPDRFNQLESFTAEFSE-ISKE 830
Score = 61 (26.5 bits), Expect = 2.4e-11, Sum P(4) = 2.4e-11
Identities = 35/139 (25%), Positives = 59/139 (42%)
Query: 347 GRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG--QKR--EVKVIYMEAVVDKISSHQ 402
G+ ++ D V+ + + K EE V A G K+ E ++++ +A VD +
Sbjct: 1098 GKSMSKTELDDVLRWGTEELFKEEEAPVEGADGEGTSSKKPNEQEIVWDDAAVDFLLDRN 1157
Query: 403 KEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEE 462
KE+E + G E + Y+ S + N + D AD+ + + T E+
Sbjct: 1158 KEEEGQDG-----EKKEHWTNEYLSSFKVATYNTKEA---DDADDDEDETEVIKEGTEEQ 1209
Query: 463 RRMTLETLL-HDEERYQET 480
E LL H E+ QET
Sbjct: 1210 DPNYWEKLLKHHYEQDQET 1228
Score = 55 (24.4 bits), Expect = 1.2e-46, Sum P(5) = 1.2e-46
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQE 34
W+ E W P + YVG D+ SR+ +E
Sbjct: 680 WEREAELWCPDFYVVTYVG--DRESRMVIRE 708
Score = 42 (19.8 bits), Expect = 1.2e-46, Sum P(5) = 1.2e-46
Identities = 19/94 (20%), Positives = 41/94 (43%)
Query: 506 QMDEEFGW-IEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVD---SGE 561
++D+ W EE+ + ++ P + + E + SKKP++ + + VD
Sbjct: 1105 ELDDVLRWGTEELFKEEEAP--VEGADGEGTS-----SKKPNEQEIVWDDAAVDFLLDRN 1157
Query: 562 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSDE 595
E E + G K + + N ++ Y+ +D+
Sbjct: 1158 KEEEGQDGEKKEHWTNEYLSSFKVATYNTKEADD 1191
Score = 41 (19.5 bits), Expect = 1.2e-46, Sum P(5) = 1.2e-46
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 890 QRRIEKEGHQIVPLLTDLWKRIETSGY 916
+RR E+ ++ PLL + +IE G+
Sbjct: 1288 RRRREERSEKLPPLLAKVNGQIEVLGF 1314
>UNIPROTKB|Q22516 [details] [associations]
symbol:chd-3 "Chromodomain-helicase-DNA-binding protein 3
homolog" species:6239 "Caenorhabditis elegans" [GO:0032508 "DNA
duplex unwinding" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003682 GO:GO:0006338 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0001709 GO:GO:0046580
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598 GO:GO:0000118
GeneTree:ENSGT00560000076896 EMBL:AF308444 EMBL:Z67884 EMBL:Z67881
PIR:T20160 RefSeq:NP_510140.1 UniGene:Cel.16950
ProteinModelPortal:Q22516 SMR:Q22516 STRING:Q22516 PaxDb:Q22516
EnsemblMetazoa:T14G8.1 GeneID:181421 KEGG:cel:CELE_T14G8.1
UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1 HOGENOM:HOG000231124
InParanoid:Q22516 OMA:INIIMEL NextBio:913870 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 Uniprot:Q22516
Length = 1787
Score = 400 (145.9 bits), Expect = 1.2e-46, Sum P(5) = 1.2e-46
Identities = 103/263 (39%), Positives = 146/263 (55%)
Query: 156 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 215
I +LH +L P MLRR DV +P K +++R +SA+Q Y K T D +
Sbjct: 833 IEKLHNLLGPHMLRRLKADVLTGMPSKQELIVRVELSAMQKKYY---KNILTRNFDALNV 889
Query: 216 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSK--------DFLVKSCG 267
K +L N MEL+K CNHP L + K L+K+ G
Sbjct: 890 KN---------GGTQMSLINIIMELKKCCNHPYLFMKACLEAPKLKNGMYEGSALIKNAG 940
Query: 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 327
K +L ++L KL+ GHRVL+FS MT +LDILE++ Y RIDG+ + + R+ AI
Sbjct: 941 KFVLLQKMLRKLKDGGHRVLIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQDAID 1000
Query: 328 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 387
+N+ + F+FLLS RA G G+NL +ADTVIIYD D NP N+ QA +RAHR+GQK +V
Sbjct: 1001 RYNAPGAKQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVM 1060
Query: 388 V---IYMEAVVDKISSHQKEDEL 407
+ + +V ++I+S K+ L
Sbjct: 1061 IYRFVTKGSVEERITSVAKKKML 1083
Score = 194 (73.4 bits), Expect = 1.2e-46, Sum P(5) = 1.2e-46
Identities = 40/99 (40%), Positives = 61/99 (61%)
Query: 38 LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTG 97
LKF+VL+T+YE I D++ LS +DW +++DEA R+K+ +S ++L Y Q R+LLTG
Sbjct: 733 LKFHVLLTSYECINMDKAILSSIDWAALVVDEAHRLKNNQSTFFKNLREYNIQYRVLLTG 792
Query: 98 TPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKE 136
TPLQN+ P+ F+ ++F FS+ KE
Sbjct: 793 TPLQNNLEELFHLLNFLAPDRFNQLESFTAEFSE-ISKE 830
Score = 61 (26.5 bits), Expect = 2.4e-11, Sum P(4) = 2.4e-11
Identities = 35/139 (25%), Positives = 59/139 (42%)
Query: 347 GRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG--QKR--EVKVIYMEAVVDKISSHQ 402
G+ ++ D V+ + + K EE V A G K+ E ++++ +A VD +
Sbjct: 1098 GKSMSKTELDDVLRWGTEELFKEEEAPVEGADGEGTSSKKPNEQEIVWDDAAVDFLLDRN 1157
Query: 403 KEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEE 462
KE+E + G E + Y+ S + N + D AD+ + + T E+
Sbjct: 1158 KEEEGQDG-----EKKEHWTNEYLSSFKVATYNTKEA---DDADDDEDETEVIKEGTEEQ 1209
Query: 463 RRMTLETLL-HDEERYQET 480
E LL H E+ QET
Sbjct: 1210 DPNYWEKLLKHHYEQDQET 1228
Score = 55 (24.4 bits), Expect = 1.2e-46, Sum P(5) = 1.2e-46
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQE 34
W+ E W P + YVG D+ SR+ +E
Sbjct: 680 WEREAELWCPDFYVVTYVG--DRESRMVIRE 708
Score = 42 (19.8 bits), Expect = 1.2e-46, Sum P(5) = 1.2e-46
Identities = 19/94 (20%), Positives = 41/94 (43%)
Query: 506 QMDEEFGW-IEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVD---SGE 561
++D+ W EE+ + ++ P + + E + SKKP++ + + VD
Sbjct: 1105 ELDDVLRWGTEELFKEEEAP--VEGADGEGTS-----SKKPNEQEIVWDDAAVDFLLDRN 1157
Query: 562 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSDE 595
E E + G K + + N ++ Y+ +D+
Sbjct: 1158 KEEEGQDGEKKEHWTNEYLSSFKVATYNTKEADD 1191
Score = 41 (19.5 bits), Expect = 1.2e-46, Sum P(5) = 1.2e-46
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 890 QRRIEKEGHQIVPLLTDLWKRIETSGY 916
+RR E+ ++ PLL + +IE G+
Sbjct: 1288 RRRREERSEKLPPLLAKVNGQIEVLGF 1314
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 303 (111.7 bits), Expect = 1.2e-46, Sum P(2) = 1.2e-46
Identities = 77/252 (30%), Positives = 124/252 (49%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W+ E KW P + Y G +++R + + +NVL+T+Y+ ++ D+ L + W
Sbjct: 889 WEMEFKKWCPGFKIMTYYGNQEERRQKRRGWMDDNSWNVLITSYQLVLQDQQVLKRRSWH 948
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXP------- 116
Y+I+DEA +K+ S + L +R + RLLLTGTPLQN+ P
Sbjct: 949 YMILDEAHNIKNFRSQRWQALLTFRTRARLLLTGTPLQNNLTELWSLLFFLMPTDGDEAG 1008
Query: 117 -EVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDV 175
E F + + F +WF +P ++ H + ++ E K ++ +LH +L P++LRR DV
Sbjct: 1009 IEGFADLRNFSEWFRRPVEQI-LEHGRET--MDDEAKQVVT-KLHTVLRPYILRRLKADV 1064
Query: 176 EGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNN 235
E +P K V+ CR+S Q +YD + R Q + Y ++ N
Sbjct: 1065 EKQMPGKYEHVVYCRLSKRQRYLYDGFMS-------------RAQTKETLASGNYLSIIN 1111
Query: 236 RCMELRKTCNHP 247
M+LRK CNHP
Sbjct: 1112 CLMQLRKVCNHP 1123
Score = 286 (105.7 bits), Expect = 1.2e-46, Sum P(2) = 1.2e-46
Identities = 61/130 (46%), Positives = 82/130 (63%)
Query: 259 KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 318
K L CGKL LD++L L+ GHR L+F+ MTK+LD+LE++L Y R+DGTT
Sbjct: 1365 KRLLQYDCGKLQRLDKLLRDLKAGGHRALIFTQMTKMLDVLEQFLNIHGHRYLRLDGTTK 1424
Query: 319 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 378
+E R+ FN+ D+ F+LS R+ G G+NL ADTVI YD D NP ++Q R H
Sbjct: 1425 VEQRQILTDRFNN-DNRILAFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCH 1483
Query: 379 RIGQKREVKV 388
RIGQ R+V +
Sbjct: 1484 RIGQTRDVHI 1493
Score = 40 (19.1 bits), Expect = 7.5e-21, Sum P(2) = 7.5e-21
Identities = 12/59 (20%), Positives = 25/59 (42%)
Query: 843 PGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIV 901
P +T + + +W+ K ++ S A +D +RR + L ++ G + V
Sbjct: 1196 PFNTLRERQYHRTNWEMKFNGSTVQSTLEALENDCRKRRMAELERSLYFESKRHGRRPV 1254
>UNIPROTKB|Q9HCK8 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0070016 "armadillo repeat
domain binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IDA]
[GO:0030178 "negative regulation of Wnt receptor signaling pathway"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003678 "DNA helicase activity" evidence=IMP] [GO:0035064
"methylated histone residue binding" evidence=IDA] [GO:0045945
"positive regulation of transcription from RNA polymerase III
promoter" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IMP] [GO:0043234 "protein complex" evidence=IDA]
[GO:0002039 "p53 binding" evidence=ISS] [GO:0008013 "beta-catenin
binding" evidence=IDA] [GO:0071339 "MLL1 complex" evidence=IDA]
[GO:0042393 "histone binding" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 Pfam:PF00385
GO:GO:0005524 GO:GO:0045892 GO:GO:0043066 GO:GO:0003677
GO:GO:0001701 GO:GO:0045944 GO:GO:0006351 GO:GO:0035064
GO:GO:0008013 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0043044 GO:GO:0071339 GO:GO:0002039 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0008094 HOVERGEN:HBG107676 EMBL:CR749315
EMBL:AL834524 EMBL:AL135744 EMBL:AL161747 EMBL:CB043942
EMBL:AB046784 EMBL:AK131077 EMBL:BC011695 EMBL:BC025964
EMBL:BC036920 EMBL:BC063693 EMBL:BC073903 EMBL:BC098452
IPI:IPI00398992 IPI:IPI00719073 RefSeq:NP_001164100.1
RefSeq:NP_065971.2 UniGene:Hs.530698 PDB:2CKA PDB:2DL6 PDBsum:2CKA
PDBsum:2DL6 ProteinModelPortal:Q9HCK8 SMR:Q9HCK8 IntAct:Q9HCK8
STRING:Q9HCK8 PhosphoSite:Q9HCK8 DMDM:226706293 PaxDb:Q9HCK8
PRIDE:Q9HCK8 Ensembl:ENST00000399982 Ensembl:ENST00000430710
Ensembl:ENST00000557364 GeneID:57680 KEGG:hsa:57680 UCSC:uc001war.2
UCSC:uc001was.2 CTD:57680 GeneCards:GC14M021853 HGNC:HGNC:20153
HPA:HPA000849 MIM:610528 neXtProt:NX_Q9HCK8 PharmGKB:PA134957052
KO:K04494 OMA:FLAYMED EvolutionaryTrace:Q9HCK8 GenomeRNAi:57680
NextBio:64494 ArrayExpress:Q9HCK8 Bgee:Q9HCK8 CleanEx:HS_CHD8
Genevestigator:Q9HCK8 GermOnline:ENSG00000100888 Uniprot:Q9HCK8
Length = 2581
Score = 552 (199.4 bits), Expect = 2.4e-46, Sum P(3) = 2.4e-46
Identities = 166/481 (34%), Positives = 247/481 (51%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
W+ E + W ++ I Y G+ R + E+ A KF+ L+TT+E I+
Sbjct: 874 WEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILS 932
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
D +L +++W+ +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 933 DCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLH 992
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + F F L+TE++V +L IL+P MLRR
Sbjct: 993 FLEPSQFPSESEFLKDFGD---------------LKTEEQV---QKLQAILKPMMLRRLK 1034
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
EDVE +L PK ++ ++ IQ Y R E + K +
Sbjct: 1035 EDVEKNLAPKQETIIEVELTNIQKKYY---------RAILEKNFSFLSKGAGHTNM--PN 1083
Query: 233 LNNRCMELRKTCNHP-LLN------YPYFSD----LSKDF----LVKSCGKLWILDRILI 277
L N MELRK CNHP L+N F + + DF +V+S GKL ++D++L
Sbjct: 1084 LLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLP 1143
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
KL+ GH+VL+FS M + LDILE+YL R+ +Y RIDG R++AI F+ DSD F
Sbjct: 1144 KLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 1203
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y ++ +
Sbjct: 1204 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV-YR--LITR 1260
Query: 398 ISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGR 453
+S+++E D+ L+ G + ++G+D G+I G IQQ+ ++++ G
Sbjct: 1261 -NSYEREMFDKASLKLGLDKAVLQSMSGRD---GNITG-----IQQFSKKEIEDLLRKGA 1311
Query: 454 F 454
+
Sbjct: 1312 Y 1312
Score = 44 (20.5 bits), Expect = 2.4e-46, Sum P(3) = 2.4e-46
Identities = 19/70 (27%), Positives = 27/70 (38%)
Query: 678 VSPQKFGSLSALEARPGSLSKR--MPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDE 735
VSP L + P L EL+ +++ S S S S T D E E E
Sbjct: 2045 VSPSDTTPLVSRSVPPVKLEDEDDSDSELDLSKLSPSSSSSSSSSSSSSST-DESEDEKE 2103
Query: 736 QVLQPKIKRK 745
+ L + + K
Sbjct: 2104 EKLTDQSRSK 2113
Score = 43 (20.2 bits), Expect = 3.1e-46, Sum P(3) = 3.1e-46
Identities = 38/204 (18%), Positives = 78/204 (38%)
Query: 715 SHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRS-IRVRPRHTVERPEERSCTDTPLHRGD 773
++M + Q+G+ + Q R S + +RP VE+ E + T P
Sbjct: 1963 NYMQNHQAGAPAPSLSRCSTPLLHQQYTSRTASPLPLRPDAPVEKSPEETATQVP----S 2018
Query: 774 SSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRAS 833
L +++++ A+ R + +R S+ + R++P K+ + S +
Sbjct: 2019 LESLTLKLEHEVVARSRPTPQ------DYEMRVSPSDTTPLVSRSVPPVKLEDEDDSDSE 2072
Query: 834 LKTGRLN---CMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQ 890
L +L+ + ++ ES D K + S +K+ D + ++
Sbjct: 2073 LDLSKLSPSSSSSSSSSSSSSSTDESEDEKEEKLTDQSR--SKLYD--EESLLSLTMSQD 2128
Query: 891 RRIEKEGHQIVPLLTDLWKRIETS 914
++G Q+ P L L +R S
Sbjct: 2129 GFPNEDGEQMTPELLLLQERQRAS 2152
Score = 40 (19.1 bits), Expect = 6.1e-45, Sum P(4) = 6.1e-45
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 983 IAFPDTDFREARSALSFTGPLSTSVSTPSPRQTTVGQSKRHK 1024
+ D D ++ LS P S+S S+ S ++ +S+ K
Sbjct: 2061 VKLEDEDDSDSELDLSKLSPSSSSSSSSSSSSSSTDESEDEK 2102
Score = 39 (18.8 bits), Expect = 2.4e-46, Sum P(3) = 2.4e-46
Identities = 23/101 (22%), Positives = 45/101 (44%)
Query: 403 KEDELRSGGTVDLEDDLAGK----DRY--IGSIEGL-IRNNIQQYKIDMADEVINAGRFD 455
K+D+L ++ EDD + DR+ G + + ++ Y ++++ GRF
Sbjct: 1412 KDDDLVEFSDLESEDDERPRSRRHDRHHAYGRTDCFRVEKHLLVYGWGRWRDILSHGRFK 1471
Query: 456 QRTTHEE-----RRMTLETLLH--DEERYQETVHDVPSLQE 489
+R T + R + + LLH +E + + D+ S E
Sbjct: 1472 RRMTERDVETICRAILVYCLLHYRGDENIKGFIWDLISPAE 1512
Score = 39 (18.8 bits), Expect = 1.3e-45, Sum P(3) = 1.3e-45
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 562 IETERKRGPKGKKYPNYKEVDDEIGEYS--EASSDER 596
I+T R R + + + K DD++ E+S E+ DER
Sbjct: 1396 IDTPRVR-KQTRHFSTLK--DDDLVEFSDLESEDDER 1429
Score = 39 (18.8 bits), Expect = 7.8e-45, Sum P(4) = 7.8e-45
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 623 PLSNKDQSEEDGPVCEGGYD 642
P + D+ EED GYD
Sbjct: 2536 PEEDDDEDEEDDDDLSQGYD 2555
Score = 38 (18.4 bits), Expect = 6.1e-45, Sum P(4) = 6.1e-45
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 769 LH-RGDSSLLPFQMDNKYPAQLRTDTEMKAH 798
LH RGD ++ F D PA+ E++ H
Sbjct: 1492 LHYRGDENIKGFIWDLISPAENGKTKELQNH 1522
Score = 38 (18.4 bits), Expect = 7.8e-45, Sum P(4) = 7.8e-45
Identities = 26/117 (22%), Positives = 52/117 (44%)
Query: 474 EERYQETVHDVPSLQEV-----NRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLR 528
E+ +ET VPSL+ + + ++ARS + ++ ++R VP ++
Sbjct: 2006 EKSPEETATQVPSLESLTLKLEHEVVARSRPTPQDYEMRVSPSDTTPLVSR--SVPP-VK 2062
Query: 529 ASTKEVNATIANLSK-KPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDE 584
++ + + +LSK PS + S+ S + E+E ++ K K D+E
Sbjct: 2063 LEDEDDSDSELDLSKLSPSSSSSSSSSSSSSSTD-ESEDEKEEKLTDQSRSKLYDEE 2118
Score = 37 (18.1 bits), Expect = 1.3e-45, Sum P(3) = 1.3e-45
Identities = 40/192 (20%), Positives = 80/192 (41%)
Query: 742 IKRKRSIRVRPRHTVERPEER-SCTDT-PLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHG 799
+K + + R R T + E R S +DT PL S+ P +++++ + D +
Sbjct: 2024 LKLEHEVVARSRPTPQDYEMRVSPSDTTPLV--SRSVPPVKLEDEDDSDSELDLSKLSPS 2081
Query: 800 ESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDG 859
S+S S S+ + K+ + +SR+ L + E++ S DG
Sbjct: 2082 SSSSSSSSSSSSSTDESEDEKEEKLTD--QSRSKL----------YDEESLLSLTMSQDG 2129
Query: 860 KIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLW---KRIE--TS 914
N G + ++ + +R+ + K + I + +L+ W +R + +
Sbjct: 2130 -FPNEDGEQ-MTPELLLLQERQRASEWPKDRVLINRIDLVCQAVLSGKWPSSRRSQEMVT 2187
Query: 915 GYVSGAGNNILD 926
G + G GN++LD
Sbjct: 2188 GGILGPGNHLLD 2199
Score = 37 (18.1 bits), Expect = 9.9e-45, Sum P(4) = 9.9e-45
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 483 DVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLR 528
+V ++E N + E + + +++D E+ R ++ WL+
Sbjct: 2297 EVECMEEPNHLDVDLETRIPVINKVDGTLLVGEDAPRRAELEMWLQ 2342
>UNIPROTKB|F1NLW6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02019534 EMBL:AADN02019532
EMBL:AADN02019533 IPI:IPI00572954 Ensembl:ENSGALT00000002030
ArrayExpress:F1NLW6 Uniprot:F1NLW6
Length = 2005
Score = 542 (195.9 bits), Expect = 3.0e-46, Sum P(2) = 3.0e-46
Identities = 150/411 (36%), Positives = 209/411 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA-----------ALKFNVLVTTYEFIMY 52
W+ E W ++ I Y G++ R + E+ KF V++TT+E I+
Sbjct: 321 WEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDTQGNPLPGIFKFQVVITTFEMILA 379
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
D +L K+ W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 380 DCPELKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLN 439
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P+ F + AF + F L+TE++V +L IL+P MLRR
Sbjct: 440 FLEPQQFPSETAFLEEFGD---------------LKTEEQV---KKLQSILKPMMLRRLK 481
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
+DVE +L PK ++ ++ IQ Y I + K Q N
Sbjct: 482 DDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS----KGANQHN-------MPN 530
Query: 233 LNNRCMELRKTCNHP-LLN---YPYFSDLSK-------DF----LVKSCGKLWILDRILI 277
L N MELRK CNHP L+N D K DF ++++ GKL ++D++L
Sbjct: 531 LINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPEAPDFQLQAMIQAAGKLVLIDKLLP 590
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
KL GH+VL+FS M + LDILE+YL R+ Y RIDG R++AI F DSD F
Sbjct: 591 KLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRF 650
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV
Sbjct: 651 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV 701
Score = 48 (22.0 bits), Expect = 4.4e-45, Sum P(4) = 4.4e-45
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 565 ERKRGPKGKKYPNYKEVDDEIGEYSE--ASSDER 596
+R R K K+ N E +DE+ E+SE + SDER
Sbjct: 843 DRPRVRKQTKHYNSFE-EDELMEFSELDSDSDER 875
Score = 38 (18.4 bits), Expect = 3.0e-46, Sum P(2) = 3.0e-46
Identities = 26/99 (26%), Positives = 41/99 (41%)
Query: 391 MEAVVDKISSHQKEDELR-----SGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMA 445
MEA SH +EDE S D+ + L+G + S + L N ++ + +
Sbjct: 1540 MEAKAGPSQSHSEEDEEEEDDDNSEVAADVTEGLSGP-KATASCDELGDVNSERGSLGLG 1598
Query: 446 D-----EVINAGRFDQRTTHEERRMTLETLLHDEERYQE 479
E GR + + HEE TL+ L ++Y E
Sbjct: 1599 TLKAPMEPGPEGR-ENHSLHEEN--TLQHLPDGPDKYLE 1634
Score = 38 (18.4 bits), Expect = 4.4e-45, Sum P(4) = 4.4e-45
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 681 QKFGSLSALEARPGSLSKRM-PDEL 704
QK SL A+ P SL K M P+ +
Sbjct: 1197 QKSRSLVAMSPSPSSLPKVMRPNSI 1221
Score = 37 (18.1 bits), Expect = 4.4e-45, Sum P(4) = 4.4e-45
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 805 RHDQSEPSSKSRRNLPSRKI 824
+++++EPS + + PSR +
Sbjct: 1459 QNEEAEPSPSTPESDPSRSV 1478
>UNIPROTKB|E2RDK8 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:AAEX03001603
EMBL:AAEX03001604 EMBL:AAEX03001605 Ensembl:ENSCAFT00000015413
Uniprot:E2RDK8
Length = 2902
Score = 544 (196.6 bits), Expect = 3.4e-46, Sum P(3) = 3.4e-46
Identities = 157/465 (33%), Positives = 234/465 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
W+ E W ++ + Y G+ R + E+ A +F ++TT+E I+
Sbjct: 925 WEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILG 983
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
+L+ ++W+ +IIDEA R+K++ L L + ++LLTGTPLQN
Sbjct: 984 GCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLH 1043
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + F F L+TE++V +L IL+P MLRR
Sbjct: 1044 FLEPLRFPSESTFMQEFGD---------------LKTEEQV---QKLQAILKPMMLRRLK 1085
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
EDVE L PK ++ ++ IQ Y R E + K Q V
Sbjct: 1086 EDVEKKLAPKEETIIEVELTNIQKKYY---------RAILEKNFSFLSKGA-GQTNV-PN 1134
Query: 233 LNNRCMELRKTCNHPLL--------------NY-PYFSDLSKDFLVKSCGKLWILDRILI 277
L N MELRK CNHP L Y P SD +++S GKL ++D++L
Sbjct: 1135 LVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLP 1194
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
K++ GH+VL+FS M + LDILE+YL ++ +Y RIDG R++AI F+ DSD F
Sbjct: 1195 KMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 1254
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y +V +
Sbjct: 1255 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKV-YR--LVTR 1311
Query: 398 ISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 438
+S+++E D L+ G + ++G++ +G I+ L + I+
Sbjct: 1312 -NSYEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIE 1355
Score = 51 (23.0 bits), Expect = 3.4e-46, Sum P(3) = 3.4e-46
Identities = 21/86 (24%), Positives = 37/86 (43%)
Query: 796 KAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKE 855
K ES+S SE SS S R+ S +++ S + ++G + A+
Sbjct: 2127 KRGSESSSESDSDSERSSCSSRSSSS---SSSSSSCSHSRSGSSSSSSSSCSSASSSSSS 2183
Query: 856 SWDGKIANASGSSNFSAKMSDVIQRR 881
S +++S SS S + +Q+R
Sbjct: 2184 SSSSSSSSSSSSSEESDSEEEEVQKR 2209
Score = 43 (20.2 bits), Expect = 2.3e-45, Sum P(3) = 2.3e-45
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 799 GESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLK 835
G HDQS SK ++++ ++ K LK
Sbjct: 2323 GAGGKEEHDQSTQMSKVKKHVREKEFTVKIKDEGGLK 2359
Score = 41 (19.5 bits), Expect = 3.4e-46, Sum P(3) = 3.4e-46
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 556 GVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 594
G +S I+T R R K+ + DE+ E SEA S+
Sbjct: 1441 GRNSLVIDTPRIR----KQTRPFSATKDELAELSEAESE 1475
Score = 41 (19.5 bits), Expect = 3.8e-45, Sum P(3) = 3.8e-45
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 965 EVRSEARKVHDLFFDLLKIAFPDTD 989
+VR +A + H F+ LK+ P+ D
Sbjct: 1935 KVREQALR-HPQLFERLKLCHPNPD 1958
Score = 38 (18.4 bits), Expect = 4.8e-45, Sum P(3) = 4.8e-45
Identities = 13/54 (24%), Positives = 22/54 (40%)
Query: 542 SKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDE 595
S S + S+ S E ++E + K + P+ K D+E + DE
Sbjct: 2179 SSSSSSSSSSSSSSSSSSEESDSEEEEVQKREGTPHVKAYDEESVASLSTTQDE 2232
>RGD|1311921 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10116 "Rattus norvegicus" [GO:0001501 "skeletal system
development" evidence=IEA;ISO] [GO:0001568 "blood vessel
development" evidence=ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003007 "heart morphogenesis"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0007417 "central
nervous system development" evidence=IEA;ISO] [GO:0007512 "adult
heart development" evidence=IEA;ISO] [GO:0007605 "sensory
perception of sound" evidence=IEA;ISO] [GO:0007626 "locomotory
behavior" evidence=ISO] [GO:0007628 "adult walking behavior"
evidence=IEA;ISO] [GO:0008015 "blood circulation" evidence=IEA;ISO]
[GO:0021545 "cranial nerve development" evidence=IEA;ISO]
[GO:0030217 "T cell differentiation" evidence=IEA;ISO] [GO:0030540
"female genitalia development" evidence=IEA;ISO] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA;ISO] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA;ISO] [GO:0042471 "ear morphogenesis" evidence=ISO]
[GO:0042472 "inner ear morphogenesis" evidence=ISO] [GO:0043010
"camera-type eye development" evidence=ISO] [GO:0043584 "nose
development" evidence=IEA;ISO] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA;ISO] [GO:0048806 "genitalia
development" evidence=ISO] [GO:0048844 "artery morphogenesis"
evidence=IEA;ISO] [GO:0050890 "cognition" evidence=IEA;ISO]
[GO:0060021 "palate development" evidence=IEA;ISO] [GO:0060041
"retina development in camera-type eye" evidence=IEA;ISO]
[GO:0060123 "regulation of growth hormone secretion"
evidence=IEA;ISO] [GO:0060173 "limb development" evidence=ISO]
[GO:0060324 "face development" evidence=IEA;ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 RGD:1311921 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0008015 GO:GO:0003007
GO:GO:0050890 GO:GO:0001701 GO:GO:0040018 GO:GO:0007417
GO:GO:0003682 GO:GO:0001501 GO:GO:0060041 GO:GO:0007605
GO:GO:0007512 GO:GO:0004386 GO:GO:0035116 GO:GO:0060324
GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030540
GO:GO:0007628 GO:GO:0030217 GO:GO:0048752 InterPro:IPR023780
CTD:55636 KO:K14437 OrthoDB:EOG4MCWZD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 IPI:IPI00366595
RefSeq:XP_003749947.1 PRIDE:D3ZAP7 Ensembl:ENSRNOT00000008901
GeneID:312974 KEGG:rno:312974 UCSC:RGD:1311921 Uniprot:D3ZAP7
Length = 2985
Score = 550 (198.7 bits), Expect = 3.5e-46, Sum P(3) = 3.5e-46
Identities = 160/465 (34%), Positives = 238/465 (51%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
W+ E W ++ + Y G++ R + E+ + KF+ ++TT+E I+
Sbjct: 1020 WEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILT 1078
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
D +L + W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 1079 DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLH 1138
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + F F L+TE++V +L IL+P MLRR
Sbjct: 1139 FLEPSRFPSETTFMQEFGD---------------LKTEEQV---QKLQAILKPMMLRRLK 1180
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
EDVE +L PK ++ ++ IQ Y R E + K QA V
Sbjct: 1181 EDVEKNLAPKEETIIEVELTNIQKKYY---------RAILEKNFTFLSKGG-GQANVPNL 1230
Query: 233 LNNRCMELRKTCNHP-LLN------YPYFSDL----SKDF----LVKSCGKLWILDRILI 277
LN MELRK CNHP L+N F D S DF ++++ GKL ++D++L
Sbjct: 1231 LNTM-MELRKCCNHPYLINGAEEKILEEFKDAHNADSPDFQLQAMIQAAGKLVLIDKLLP 1289
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
KL+ GHRVL+FS M + LDILE+YL R+ Y RIDG R++AI F+ DSD F
Sbjct: 1290 KLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRF 1349
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VK IY ++ +
Sbjct: 1350 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVK-IYR--LITR 1406
Query: 398 ISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 438
+S+++E D+ L+ G + ++G++ ++ L + I+
Sbjct: 1407 -NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE 1450
Score = 44 (20.5 bits), Expect = 3.5e-46, Sum P(3) = 3.5e-46
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 807 DQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPG-HTED 848
D+SE SS+ SR +S AS+ T R G + ED
Sbjct: 2237 DKSEESSQPEAGAVSRGKTFDEESNASMSTARDETRDGFYMED 2279
Score = 42 (19.8 bits), Expect = 3.5e-46, Sum P(3) = 3.5e-46
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 562 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 594
I+T R R + + Y KE DE+ E+S+ SD
Sbjct: 1542 IDTPRVR-KQTRLYSAVKE--DELMEFSDLESD 1571
>UNIPROTKB|F1NLV5 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OMA:CKWATME GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00588365
Ensembl:ENSGALT00000002034 ArrayExpress:F1NLV5 Uniprot:F1NLV5
Length = 2007
Score = 542 (195.9 bits), Expect = 3.9e-46, Sum P(2) = 3.9e-46
Identities = 150/411 (36%), Positives = 209/411 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA-----------ALKFNVLVTTYEFIMY 52
W+ E W ++ I Y G++ R + E+ KF V++TT+E I+
Sbjct: 321 WEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDTQGNPLPGIFKFQVVITTFEMILA 379
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
D +L K+ W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 380 DCPELKKIQWRCVVIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLN 439
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P+ F + AF + F L+TE++V +L IL+P MLRR
Sbjct: 440 FLEPQQFPSETAFLEEFGD---------------LKTEEQV---KKLQSILKPMMLRRLK 481
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
+DVE +L PK ++ ++ IQ Y I + K Q N
Sbjct: 482 DDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS----KGANQHN-------MPN 530
Query: 233 LNNRCMELRKTCNHP-LLN---YPYFSDLSK-------DF----LVKSCGKLWILDRILI 277
L N MELRK CNHP L+N D K DF ++++ GKL ++D++L
Sbjct: 531 LINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPEAPDFQLQAMIQAAGKLVLIDKLLP 590
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
KL GH+VL+FS M + LDILE+YL R+ Y RIDG R++AI F DSD F
Sbjct: 591 KLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRF 650
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV
Sbjct: 651 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV 701
Score = 48 (22.0 bits), Expect = 4.5e-45, Sum P(4) = 4.5e-45
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 565 ERKRGPKGKKYPNYKEVDDEIGEYSE--ASSDER 596
+R R K K+ N E +DE+ E+SE + SDER
Sbjct: 843 DRPRVRKQTKHYNSFE-EDELMEFSELDSDSDER 875
Score = 38 (18.4 bits), Expect = 4.5e-45, Sum P(4) = 4.5e-45
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 681 QKFGSLSALEARPGSLSKRM-PDEL 704
QK SL A+ P SL K M P+ +
Sbjct: 1197 QKSRSLVAMSPSPSSLPKVMRPNSI 1221
Score = 37 (18.1 bits), Expect = 3.9e-46, Sum P(2) = 3.9e-46
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 391 MEAVVDKISSHQKEDE 406
MEA SH +EDE
Sbjct: 1540 MEAKAGPSQSHSEEDE 1555
Score = 37 (18.1 bits), Expect = 4.5e-45, Sum P(4) = 4.5e-45
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 805 RHDQSEPSSKSRRNLPSRKI 824
+++++EPS + + PSR +
Sbjct: 1459 QNEEAEPSPSTPESDPSRSV 1478
>RGD|620696 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10116 "Rattus norvegicus" [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0002039 "p53 binding"
evidence=ISO;ISS] [GO:0003677 "DNA binding" evidence=ISO;ISS]
[GO:0003678 "DNA helicase activity" evidence=ISO;ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008013 "beta-catenin binding" evidence=ISO;IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISO;ISS] [GO:0030178
"negative regulation of Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO;ISS]
[GO:0042393 "histone binding" evidence=ISO;ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO;ISS] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO;ISS]
[GO:0043234 "protein complex" evidence=ISO;IDA] [GO:0045892
"negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0045945 "positive regulation of
transcription from RNA polymerase III promoter" evidence=ISO;ISS]
[GO:0060070 "canonical Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0070016 "armadillo repeat domain binding"
evidence=IPI] [GO:0071339 "MLL1 complex" evidence=ISO;ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:620696 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
GO:GO:0002039 EMBL:CH474040 InterPro:IPR023780 PROSITE:PS00598
GO:GO:0008094 HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
EMBL:AF169825 IPI:IPI00201110 IPI:IPI00923717 RefSeq:NP_075222.2
UniGene:Rn.98337 STRING:Q9JIX5 PhosphoSite:Q9JIX5 PRIDE:Q9JIX5
Ensembl:ENSRNOT00000022593 GeneID:65027 KEGG:rno:65027
UCSC:RGD:620696 NextBio:613802 Genevestigator:Q9JIX5 Uniprot:Q9JIX5
Length = 2581
Score = 553 (199.7 bits), Expect = 4.4e-46, Sum P(4) = 4.4e-46
Identities = 166/481 (34%), Positives = 248/481 (51%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
W+ E + W ++ I Y G+ R + E+ A KF+ L+TT+E I+
Sbjct: 874 WEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILS 932
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
D +L +++W+ +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 933 DCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLH 992
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + F F L+TE++V +L IL+P MLRR
Sbjct: 993 FLEPSQFPSESEFLKDFGD---------------LKTEEQV---QKLQAILKPMMLRRLK 1034
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
EDVE +L PK ++ ++ IQ Y R E + K +
Sbjct: 1035 EDVEKNLAPKQETIIEVELTNIQKKYY---------RAILEKNFSFLSKGAGHTNM--PN 1083
Query: 233 LNNRCMELRKTCNHP-LLN------YPYFSD----LSKDF----LVKSCGKLWILDRILI 277
L N MELRK CNHP L+N F + + +DF +V+S GKL ++D++L
Sbjct: 1084 LLNTMMELRKCCNHPYLINGAEEKILMEFREACHIIPQDFHLQAMVRSAGKLVLIDKLLP 1143
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
KL+ GH+VL+FS M + LDILE+YL R+ +Y RIDG R++AI F+ DSD F
Sbjct: 1144 KLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 1203
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y ++ +
Sbjct: 1204 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV-YR--LITR 1260
Query: 398 ISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGR 453
+S+++E D+ L+ G + ++G+D G+I G IQQ+ ++++ G
Sbjct: 1261 -NSYEREMFDKASLKLGLDKAVLQSMSGRD---GNITG-----IQQFSKKEIEDLLRKGA 1311
Query: 454 F 454
+
Sbjct: 1312 Y 1312
Score = 47 (21.6 bits), Expect = 4.4e-46, Sum P(4) = 4.4e-46
Identities = 43/192 (22%), Positives = 80/192 (41%)
Query: 742 IKRKRSIRVRPRHTVERPEER-SCTDT-PLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHG 799
+K + + R R T + E R + +DT PL R S+ P ++++ + D +
Sbjct: 2024 LKLEDEVVARSRLTPQDYEIRVASSDTAPLSR---SVPPVKLEDDDDSDSELDLSKLSPS 2080
Query: 800 ESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDG 859
S+S S SS + K+ A +SR L + E++ S DG
Sbjct: 2081 SSSSSSSSSSSSSSDESEDEKEEKLT-ADRSRPKL----------YDEESLLSLTMSQDG 2129
Query: 860 KIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLW---KRIE--TS 914
N G + ++ + +R+ + K + I + +L+ W +R + T+
Sbjct: 2130 -FPNEDGEQ-MTPELLLLQERQRASEWPKDRVLINRIDLVCQAVLSGKWPSNRRSQEMTT 2187
Query: 915 GYVSGAGNNILD 926
G + G GN++LD
Sbjct: 2188 GGILGPGNHLLD 2199
Score = 45 (20.9 bits), Expect = 7.1e-46, Sum P(4) = 7.1e-46
Identities = 22/86 (25%), Positives = 38/86 (44%)
Query: 676 SPVSPQKFGSLSALEARPGSLSKRMP------DELEEGEIAVS--GDSHMDHQQSGSWTH 727
S ++PQ + + + LS+ +P D+ + E+ +S S S S +
Sbjct: 2034 SRLTPQDY-EIRVASSDTAPLSRSVPPVKLEDDDDSDSELDLSKLSPSSSSSSSSSSSSS 2092
Query: 728 DRDEGEDEQVLQPKIKRKRSIRVRPR 753
DE EDE+ + K+ RS RP+
Sbjct: 2093 SSDESEDEK--EEKLTADRS---RPK 2113
Score = 42 (19.8 bits), Expect = 9.0e-45, Sum P(5) = 9.0e-45
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 964 HEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFTGPLSTSVSTPSPRQTTVGQSKRH 1023
+E+R + L + + D D ++ LS P S+S S+ S ++ +S+
Sbjct: 2041 YEIRVASSDTAPLSRSVPPVKLEDDDDSDSELDLSKLSPSSSSSSSSSSSSSSSDESEDE 2100
Query: 1024 K 1024
K
Sbjct: 2101 K 2101
Score = 41 (19.5 bits), Expect = 4.4e-46, Sum P(4) = 4.4e-46
Identities = 23/101 (22%), Positives = 45/101 (44%)
Query: 403 KEDELRSGGTVDLEDDLAGK----DRY--IGSIEGL-IRNNIQQYKIDMADEVINAGRFD 455
K+D+L ++ EDD + DR+ G + + ++ Y ++++ GRF
Sbjct: 1412 KDDDLVEFSDLESEDDERPRSRRHDRHHTYGRTDCFRVEKHLLVYGWGRWRDILSHGRFK 1471
Query: 456 QRTTHEE-----RRMTLETLLH--DEERYQETVHDVPSLQE 489
+R T + R + + LLH +E + + D+ S E
Sbjct: 1472 RRMTERDVETICRAILVYCLLHYRGDENIKSFIWDLISPAE 1512
Score = 39 (18.8 bits), Expect = 4.4e-46, Sum P(4) = 4.4e-46
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 1146 QPAQPANGGSGAVG 1159
+P QPAN +G G
Sbjct: 2382 EPVQPANSRNGKKG 2395
Score = 39 (18.8 bits), Expect = 9.0e-45, Sum P(5) = 9.0e-45
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 769 LH-RGDSSLLPFQMDNKYPAQLRTDTEMKAH 798
LH RGD ++ F D PA+ E++ H
Sbjct: 1492 LHYRGDENIKSFIWDLISPAENGKTKELQNH 1522
Score = 39 (18.8 bits), Expect = 9.0e-45, Sum P(5) = 9.0e-45
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 562 IETERKRGPKGKKYPNYKEVDDEIGEYS--EASSDER 596
I+T R R + + + K DD++ E+S E+ DER
Sbjct: 1396 IDTPRVR-KQTRHFSTLK--DDDLVEFSDLESEDDER 1429
Score = 37 (18.1 bits), Expect = 4.8e-45, Sum P(4) = 4.8e-45
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 483 DVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLR 528
+V ++E N + E + + +++D +E R ++ WL+
Sbjct: 2297 EVECMEEPNHLDVDLETRIPVINKVDGTLLVGDEAPRRAELDMWLQ 2342
>MGI|MGI:1915022 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0002039 "p53 binding" evidence=IPI] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=ISO;IDA] [GO:0003678 "DNA helicase activity" evidence=ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=ISO] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISO] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0030178 "negative regulation of Wnt receptor
signaling pathway" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0035064 "methylated histone residue binding"
evidence=ISO] [GO:0042393 "histone binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP;IDA] [GO:0043234 "protein complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0045945 "positive regulation of transcription
from RNA polymerase III promoter" evidence=ISO] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=ISO]
[GO:0070016 "armadillo repeat domain binding" evidence=ISO]
[GO:0071339 "MLL1 complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 MGI:MGI:1915022 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 GO:GO:0008094
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
OMA:FLAYMED EMBL:DQ190419 EMBL:AY863219 EMBL:AK129393 EMBL:AK160299
IPI:IPI00858099 IPI:IPI00923681 RefSeq:NP_963999.2
UniGene:Mm.289934 ProteinModelPortal:Q09XV5 SMR:Q09XV5
IntAct:Q09XV5 STRING:Q09XV5 PhosphoSite:Q09XV5 PaxDb:Q09XV5
PRIDE:Q09XV5 Ensembl:ENSMUST00000089752 GeneID:67772 KEGG:mmu:67772
UCSC:uc007tot.1 UCSC:uc007tov.1 InParanoid:Q09XV5 ChiTaRS:CHD8
NextBio:325525 Bgee:Q09XV5 Genevestigator:Q09XV5 Uniprot:Q09XV5
Length = 2582
Score = 553 (199.7 bits), Expect = 5.6e-46, Sum P(4) = 5.6e-46
Identities = 166/481 (34%), Positives = 248/481 (51%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
W+ E + W ++ I Y G+ R + E+ A KF+ L+TT+E I+
Sbjct: 876 WEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEMILS 934
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
D +L +++W+ +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 935 DCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLH 994
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + F F L+TE++V +L IL+P MLRR
Sbjct: 995 FLEPSQFPSESEFLKDFGD---------------LKTEEQV---QKLQAILKPMMLRRLK 1036
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
EDVE +L PK ++ ++ IQ Y R E + K +
Sbjct: 1037 EDVEKNLAPKQETIIEVELTNIQKKYY---------RAILEKNFSFLSKGAGHTNM--PN 1085
Query: 233 LNNRCMELRKTCNHP-LLN------YPYFSD----LSKDF----LVKSCGKLWILDRILI 277
L N MELRK CNHP L+N F + + +DF +V+S GKL ++D++L
Sbjct: 1086 LLNTMMELRKCCNHPYLINGAEEKILMEFREACHIIPQDFHLQAMVRSAGKLVLIDKLLP 1145
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
KL+ GH+VL+FS M + LDILE+YL R+ +Y RIDG R++AI F+ DSD F
Sbjct: 1146 KLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 1205
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y ++ +
Sbjct: 1206 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV-YR--LITR 1262
Query: 398 ISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGR 453
+S+++E D+ L+ G + ++G+D G+I G IQQ+ ++++ G
Sbjct: 1263 -NSYEREMFDKASLKLGLDKAVLQSMSGRD---GNITG-----IQQFSKKEIEDLLRKGA 1313
Query: 454 F 454
+
Sbjct: 1314 Y 1314
Score = 46 (21.3 bits), Expect = 5.6e-46, Sum P(4) = 5.6e-46
Identities = 42/192 (21%), Positives = 80/192 (41%)
Query: 742 IKRKRSIRVRPRHTVERPEER-SCTDT-PLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHG 799
+K + + R R T + E R +DT PL R S+ P +++++ + D +
Sbjct: 2026 LKLEDEVVARSRLTSQDYEVRVGSSDTAPLSR---SVPPVKLEDEDDSDSELDLSKLSPS 2082
Query: 800 ESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDG 859
S+S S S+ + K+ A +SR L + E++ S DG
Sbjct: 2083 SSSSSSSSSSSSSTDESEDEKEEKLT-ADRSRPKL----------YDEESLLSLTMSQDG 2131
Query: 860 KIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLW---KRIE--TS 914
N G + ++ + +R+ + K + I + +L+ W +R + T+
Sbjct: 2132 -FPNEDGEQ-MTPELLLLQERQRASEWPKDRVLINRIDLVCQAVLSGKWPSNRRSQEVTA 2189
Query: 915 GYVSGAGNNILD 926
G + G GN++LD
Sbjct: 2190 GGILGPGNHLLD 2201
Score = 44 (20.5 bits), Expect = 9.0e-46, Sum P(4) = 9.0e-46
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 703 ELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPR 753
EL+ +++ S S S S T DE EDE+ + K+ RS RP+
Sbjct: 2073 ELDLSKLSPSSSSSSSSSSSSSST---DESEDEK--EEKLTADRS---RPK 2115
Score = 44 (20.5 bits), Expect = 5.6e-45, Sum P(5) = 5.6e-45
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 964 HEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFTGPLSTSVSTPSPRQTTVGQSKRH 1023
+EVR + L + + D D ++ LS P S+S S+ S ++ +S+
Sbjct: 2043 YEVRVGSSDTAPLSRSVPPVKLEDEDDSDSELDLSKLSPSSSSSSSSSSSSSSTDESEDE 2102
Query: 1024 K 1024
K
Sbjct: 2103 K 2103
Score = 41 (19.5 bits), Expect = 5.6e-46, Sum P(4) = 5.6e-46
Identities = 23/101 (22%), Positives = 45/101 (44%)
Query: 403 KEDELRSGGTVDLEDDLAGK----DRY--IGSIEGL-IRNNIQQYKIDMADEVINAGRFD 455
K+D+L ++ EDD + DR+ G + + ++ Y ++++ GRF
Sbjct: 1414 KDDDLVEFSDLESEDDERPRSRRHDRHHTYGRTDCFRVEKHLLVYGWGRWRDILSHGRFK 1473
Query: 456 QRTTHEE-----RRMTLETLLH--DEERYQETVHDVPSLQE 489
+R T + R + + LLH +E + + D+ S E
Sbjct: 1474 RRMTERDVETICRAILVYCLLHYRGDENIKSFIWDLISPAE 1514
Score = 39 (18.8 bits), Expect = 5.6e-46, Sum P(4) = 5.6e-46
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 1146 QPAQPANGGSGAVG 1159
+P QPAN +G G
Sbjct: 2384 EPVQPANSRNGKKG 2397
Score = 39 (18.8 bits), Expect = 5.6e-45, Sum P(5) = 5.6e-45
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 769 LH-RGDSSLLPFQMDNKYPAQLRTDTEMKAH 798
LH RGD ++ F D PA+ E++ H
Sbjct: 1494 LHYRGDENIKSFIWDLISPAENGKTKELQNH 1524
Score = 39 (18.8 bits), Expect = 5.6e-45, Sum P(5) = 5.6e-45
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 562 IETERKRGPKGKKYPNYKEVDDEIGEYS--EASSDER 596
I+T R R + + + K DD++ E+S E+ DER
Sbjct: 1398 IDTPRVR-KQTRHFSTLK--DDDLVEFSDLESEDDER 1431
>MGI|MGI:2444748 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=ISO] [GO:0001568 "blood vessel development" evidence=IMP]
[GO:0001701 "in utero embryonic development" evidence=ISO;IMP]
[GO:0003007 "heart morphogenesis" evidence=ISO;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007417 "central
nervous system development" evidence=ISO] [GO:0007512 "adult heart
development" evidence=IMP] [GO:0007605 "sensory perception of
sound" evidence=IMP] [GO:0007626 "locomotory behavior"
evidence=IMP] [GO:0007628 "adult walking behavior" evidence=IMP]
[GO:0008015 "blood circulation" evidence=IMP] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0021545 "cranial nerve
development" evidence=ISO] [GO:0030217 "T cell differentiation"
evidence=ISO] [GO:0030540 "female genitalia development"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0042471 "ear morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis"
evidence=ISO;IMP] [GO:0043010 "camera-type eye development"
evidence=IMP] [GO:0043584 "nose development" evidence=ISO;IMP]
[GO:0048752 "semicircular canal morphogenesis" evidence=IGI]
[GO:0048806 "genitalia development" evidence=ISO] [GO:0048844
"artery morphogenesis" evidence=IGI] [GO:0050890 "cognition"
evidence=ISO] [GO:0060021 "palate development" evidence=ISO;IMP]
[GO:0060041 "retina development in camera-type eye" evidence=ISO]
[GO:0060123 "regulation of growth hormone secretion" evidence=ISO]
[GO:0060173 "limb development" evidence=ISO] [GO:0060324 "face
development" evidence=ISO] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 MGI:MGI:2444748 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008015 GO:GO:0003007 GO:GO:0050890 GO:GO:0001701
GO:GO:0040018 GO:GO:0007417 GO:GO:0006351 GO:GO:0003682
GO:GO:0016568 GO:GO:0043010 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0030540 GO:GO:0007628 GO:GO:0030217
GO:GO:0048752 InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
CTD:55636 HOGENOM:HOG000246942 KO:K14437 OrthoDB:EOG4MCWZD
OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584 GO:GO:0060123 EMBL:AK042727
EMBL:AK171051 EMBL:AK171857 EMBL:AK172025 EMBL:AL732627
EMBL:AL805903 EMBL:BC034239 IPI:IPI00345676 IPI:IPI00666779
IPI:IPI00849588 RefSeq:NP_001074886.1 UniGene:Mm.138792
ProteinModelPortal:A2AJK6 SMR:A2AJK6 IntAct:A2AJK6 STRING:A2AJK6
PhosphoSite:A2AJK6 PaxDb:A2AJK6 PRIDE:A2AJK6
Ensembl:ENSMUST00000039267 Ensembl:ENSMUST00000051558
Ensembl:ENSMUST00000127476 GeneID:320790 KEGG:mmu:320790
UCSC:uc008rxy.1 UCSC:uc008rya.1 GeneTree:ENSGT00560000077077
InParanoid:A2AJK6 NextBio:397435 Bgee:A2AJK6 CleanEx:MM_CHD7
Genevestigator:A2AJK6 Uniprot:A2AJK6
Length = 2986
Score = 546 (197.3 bits), Expect = 6.0e-46, Sum P(3) = 6.0e-46
Identities = 159/465 (34%), Positives = 238/465 (51%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
W+ E W ++ + Y G++ R + E+ + KF+ ++TT+E I+
Sbjct: 1021 WEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILT 1079
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
D +L + W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 1080 DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLH 1139
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + F F L+TE++V +L IL+P MLRR
Sbjct: 1140 FLEPSRFPSETTFMQEFGD---------------LKTEEQV---QKLQAILKPMMLRRLK 1181
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
EDVE +L PK ++ ++ IQ Y R E + K QA V
Sbjct: 1182 EDVEKNLAPKEETIIEVELTNIQKKYY---------RAILEKNFTFLSKGG-GQANVPNL 1231
Query: 233 LNNRCMELRKTCNHP-LLN------YPYFSDL----SKDF----LVKSCGKLWILDRILI 277
LN MELRK CNHP L+N F + S DF ++++ GKL ++D++L
Sbjct: 1232 LNTM-MELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLP 1290
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
KL+ GHRVL+FS M + LDILE+YL R+ Y RIDG R++AI F+ DSD F
Sbjct: 1291 KLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRF 1350
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VK IY ++ +
Sbjct: 1351 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVK-IYR--LITR 1407
Query: 398 ISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 438
+S+++E D+ L+ G + ++G++ ++ L + I+
Sbjct: 1408 -NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE 1451
Score = 46 (21.3 bits), Expect = 6.0e-46, Sum P(3) = 6.0e-46
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 807 DQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPG-HTED 848
D+SE SS+ SR +S ASL T R G + ED
Sbjct: 2238 DKSEESSQPEAGAVSRGKTFDEESNASLSTARDETRDGFYMED 2280
Score = 42 (19.8 bits), Expect = 6.0e-46, Sum P(3) = 6.0e-46
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 562 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 594
I+T R R + + Y KE DE+ E+S+ SD
Sbjct: 1543 IDTPRVR-KQTRLYSAVKE--DELMEFSDLESD 1572
>UNIPROTKB|F1NSG3 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008015 "blood circulation" evidence=IEA] [GO:0021545 "cranial
nerve development" evidence=IEA] [GO:0030217 "T cell
differentiation" evidence=IEA] [GO:0030540 "female genitalia
development" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] [GO:0043584 "nose
development" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0050890 "cognition" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0060041 "retina development
in camera-type eye" evidence=IEA] [GO:0060123 "regulation of growth
hormone secretion" evidence=IEA] [GO:0060324 "face development"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003007 "heart morphogenesis" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0040018 GO:GO:0003682
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 IPI:IPI00590082
OMA:TFGVIFD GO:GO:0060123 GeneTree:ENSGT00560000077077
EMBL:AADN02022009 EMBL:AADN02022010 Ensembl:ENSGALT00000024950
ArrayExpress:F1NSG3 Uniprot:F1NSG3
Length = 2248
Score = 543 (196.2 bits), Expect = 6.4e-46, Sum P(3) = 6.4e-46
Identities = 159/465 (34%), Positives = 238/465 (51%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
W+ E W ++ + Y G++ R + E+ + KF+ ++TT+E I+
Sbjct: 269 WEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILT 327
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
D +L + W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 328 DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLH 387
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + F F L+TE++V +L IL+P MLRR
Sbjct: 388 FLEPGRFPSETTFMQEFGD---------------LKTEEQV---QKLQAILKPMMLRRLK 429
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
EDVE +L PK ++ ++ IQ Y R E + K QA V
Sbjct: 430 EDVEKNLAPKEETIIEVELTNIQKKYY---------RAILEKNFAFLSKGG-GQANVPNL 479
Query: 233 LNNRCMELRKTCNHP-LLN------YPYFSDL----SKDF----LVKSCGKLWILDRILI 277
LN MELRK CNHP L+N F + S DF ++++ GKL ++D++L
Sbjct: 480 LNTM-MELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLIDKLLP 538
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
KL+ GHRVL+FS M + LDILE+YL R+ Y RIDG R++AI F+ DSD F
Sbjct: 539 KLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPDSDRF 598
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VK IY ++ +
Sbjct: 599 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVK-IYR--LITR 655
Query: 398 ISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 438
+S+++E D+ L+ G + ++G++ ++ L + I+
Sbjct: 656 -NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE 699
Score = 44 (20.5 bits), Expect = 6.4e-46, Sum P(3) = 6.4e-46
Identities = 27/126 (21%), Positives = 46/126 (36%)
Query: 726 THDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGD--SSLLPFQMDN 783
T ++ E + E P K K I+ ++ ++ C D G L +M
Sbjct: 1407 TTEQTESKVEGSENPAAKEKSDIK-EETDIADKDTKQDC-DAEAETGSVKCELKDIEMST 1464
Query: 784 KYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMP 843
+ ++ + E D+SE SS+ S+ +S AS+ T R
Sbjct: 1465 DVDPKSISEKGSEEDEEEKLDDDDKSEESSQPEAGAVSQGKNFDEESNASMSTARDETRD 1524
Query: 844 G-HTED 848
G + ED
Sbjct: 1525 GFYMED 1530
Score = 42 (19.8 bits), Expect = 6.4e-46, Sum P(3) = 6.4e-46
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 562 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 594
I+T R R + + Y KE DE+ E+S+ SD
Sbjct: 791 IDTPRVR-KQTRLYSAVKE--DELMEFSDLESD 820
Score = 40 (19.1 bits), Expect = 1.7e-45, Sum P(3) = 1.7e-45
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 675 VSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEI-AVSGDSHMDHQQSGSWTHDRDEGE 733
V P S + GS E + K +E + E AVS + D + + S + RDE
Sbjct: 1466 VDPKSISEKGSEEDEEEKLDDDDKS--EESSQPEAGAVSQGKNFDEESNASMSTARDETR 1523
Query: 734 D 734
D
Sbjct: 1524 D 1524
Score = 37 (18.1 bits), Expect = 2.1e-45, Sum P(3) = 2.1e-45
Identities = 7/39 (17%), Positives = 19/39 (48%)
Query: 433 IRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLL 471
+ N+ Y ++++ GR+ ++ T ++ T+L
Sbjct: 847 VEKNLLVYGWGRWTDILSHGRYKRQLTEQDVETICRTIL 885
>DICTYBASE|DDB_G0280705 [details] [associations]
symbol:DDB_G0280705 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
dictyBase:DDB_G0280705 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0003682 EMBL:AAFI02000037
GO:GO:0004003 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
KO:K14437 RefSeq:XP_641133.1 ProteinModelPortal:Q54UZ8
EnsemblProtists:DDB0220644 GeneID:8622691 KEGG:ddi:DDB_G0280705
InParanoid:Q54UZ8 OMA:YPHERID ProtClustDB:CLSZ2846801
Uniprot:Q54UZ8
Length = 2373
Score = 400 (145.9 bits), Expect = 7.4e-46, Sum P(3) = 7.4e-46
Identities = 103/244 (42%), Positives = 144/244 (59%)
Query: 156 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI--KATGTLRVDPE 213
+ L IL+P++LRR E VE S+ PK ++ ++ +Q Y I K LR
Sbjct: 724 VESLQAILKPYLLRRMKERVEKSIAPKEETIVEVELTTVQKKYYRAIYEKNFSFLR---- 779
Query: 214 DEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF-SDLS--KD----F--LVK 264
+ + + P +L N MELRK CNHP L S+ S KD F L++
Sbjct: 780 -KGGKSNQGP--------SLLNIMMELRKCCNHPYLTKGVEQSETSSIKDKDQIFQKLIQ 830
Query: 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 324
+ GKL ++D++L KL+ H+VL+FS M +LDIL++YL +R + RIDG+ DR++
Sbjct: 831 ASGKLVLIDKLLPKLKLGNHKVLIFSQMVSVLDILDDYLTYRGYPHERIDGSIKGNDRQA 890
Query: 325 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 384
AI F+ DSD F+FLL RA G G+NL +ADTVII+D D NP+N+ QA AR HRIGQ +
Sbjct: 891 AIDRFSKPDSDRFVFLLCTRAGGIGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQDK 950
Query: 385 EVKV 388
VKV
Sbjct: 951 MVKV 954
Score = 196 (74.1 bits), Expect = 7.4e-46, Sum P(3) = 7.4e-46
Identities = 39/87 (44%), Positives = 52/87 (59%)
Query: 39 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGT 98
KFNVL+TTYE + DR+ LS++ WKY++IDEA R+K++ L +L Y LLLTGT
Sbjct: 625 KFNVLITTYEMAITDRTHLSRIPWKYLVIDEAHRLKNKSCKLTIELRSYSFDHLLLLTGT 684
Query: 99 PLQNDXXXXXXXXXXXXPEVFDNRKAF 125
PLQN+ P+ F N F
Sbjct: 685 PLQNNTQELWSLLNFLDPKQFSNLDQF 711
Score = 45 (20.9 bits), Expect = 2.1e-45, Sum P(4) = 2.1e-45
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 681 QKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDS-HMDHQQSGSWTHDRDEGEDEQ 736
+KF S + + K D+L++G ++ S S + QQ S D D ED++
Sbjct: 1644 KKFRSNVLFNTKENQM-KLKQDKLQKGGLSSSTSSTDLQQQQQQSTGDDDDLLEDDE 1699
Score = 45 (20.9 bits), Expect = 1.3e-44, Sum P(5) = 1.3e-44
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 403 KEDELRSGGTVDLEDDLAGKDR 424
KE E SGG ++DD + K R
Sbjct: 1803 KEKEKGSGGDSGVDDDASDKKR 1824
Score = 40 (19.1 bits), Expect = 7.4e-46, Sum P(3) = 7.4e-46
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 793 TEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANA 827
T+M + +SN+ + S SS ++ LP ++ N+
Sbjct: 983 TKMNSLADSNN--GNNSSSSSTTKDELPDKETINS 1015
Score = 40 (19.1 bits), Expect = 2.1e-45, Sum P(4) = 2.1e-45
Identities = 6/31 (19%), Positives = 18/31 (58%)
Query: 790 RTDTEMKAHGESNSLRHDQSEPSSKSRRNLP 820
RT+ ++ +N + ++ ++ ++ + NLP
Sbjct: 2195 RTNKNNYSNNNNNDINNNNNDNNNNNNNNLP 2225
Score = 39 (18.8 bits), Expect = 9.5e-46, Sum P(3) = 9.5e-46
Identities = 20/91 (21%), Positives = 38/91 (41%)
Query: 800 ESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDG 859
E R + + +++ L K+ S ++ T T D D ++ D
Sbjct: 1642 EEKKFRSNVLFNTKENQMKLKQDKLQKGGLSSSTSSTDLQQQQQQSTGDDDDLLED--DE 1699
Query: 860 KIANASGSSNFSAKMSDVIQRRCKNVISKLQ 890
K N + S ++S ++Q CK V+S++Q
Sbjct: 1700 KGGNIDKKPSGSDELS-LVQ--CKRVLSRIQ 1727
Score = 39 (18.8 bits), Expect = 1.3e-44, Sum P(5) = 1.3e-44
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 462 ERRMTLETLLHDEERYQE 479
E++ +L +LH EE + +
Sbjct: 2013 EKKASLINILHSEEEFSD 2030
Score = 37 (18.1 bits), Expect = 1.4e-44, Sum P(4) = 1.4e-44
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 730 DEGEDEQVLQPKIKRKRSI 748
D G D+ K KRK +I
Sbjct: 1812 DSGVDDDASDKKRKRKENI 1830
>UNIPROTKB|E1BPM4 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:DAAA02038386
EMBL:DAAA02038387 EMBL:DAAA02038388 IPI:IPI00697020
Ensembl:ENSBTAT00000026607 Uniprot:E1BPM4
Length = 2940
Score = 543 (196.2 bits), Expect = 8.2e-46, Sum P(4) = 8.2e-46
Identities = 159/465 (34%), Positives = 238/465 (51%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
W+ E W ++ + Y G++ R + E+ + KF+ ++TT+E I+
Sbjct: 981 WEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILT 1039
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
D +L + W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 1040 DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLH 1099
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + F F L+TE++V +L IL+P MLRR
Sbjct: 1100 FLEPTRFPSETTFMQEFGD---------------LKTEEQV---QKLQAILKPMMLRRLK 1141
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
EDVE +L PK ++ ++ IQ Y R E + K QA V
Sbjct: 1142 EDVEKNLAPKEETIIEVELTNIQKKYY---------RAILEKNFAFLSKGG-GQANVPNL 1191
Query: 233 LNNRCMELRKTCNHP-LLN------YPYFSDL----SKDF----LVKSCGKLWILDRILI 277
LN MELRK CNHP L+N F + S DF ++++ GKL ++D++L
Sbjct: 1192 LNTM-MELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLIDKLLP 1250
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
KL+ GHRVL+FS M + LDILE+YL R+ Y RIDG R++AI F+ DSD F
Sbjct: 1251 KLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRF 1310
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VK IY ++ +
Sbjct: 1311 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVK-IYR--LITR 1367
Query: 398 ISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 438
+S+++E D+ L+ G + ++G++ ++ L + I+
Sbjct: 1368 -NSYEREMFDKASLKLGLDKAVLQSMSGRENAPNGVQQLSKKEIE 1411
Score = 49 (22.3 bits), Expect = 8.2e-46, Sum P(4) = 8.2e-46
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 672 TQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSG-DSHMDHQ 720
T +P +P + A EA+ S++ P+ EE E SG D D +
Sbjct: 2103 TPAATPAAPGQEDKAGAAEAKAREASEK-PEGKEEEEAEGSGKDQRQDRE 2151
Score = 47 (21.6 bits), Expect = 8.2e-46, Sum P(4) = 8.2e-46
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 555 IGVDSGEIETE--RKRGPKGKKYPNYKEVDDEI--GEYSEASSDERNG 598
+G+D +++ R+ P G + + KE++D + G Y +E G
Sbjct: 1382 LGLDKAVLQSMSGRENAPNGVQQLSKKEIEDLLRKGAYGALMDEEDEG 1429
Score = 42 (19.8 bits), Expect = 8.2e-46, Sum P(4) = 8.2e-46
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 807 DQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPG-HTED 848
D+SE SS+ SR +S AS+ T R G + ED
Sbjct: 2192 DKSEESSQPEAGAVSRGKNFDEESNASMSTARDETRDGFYMED 2234
Score = 42 (19.8 bits), Expect = 2.7e-45, Sum P(4) = 2.7e-45
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 562 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 594
I+T R R + + Y KE DE+ E+S+ SD
Sbjct: 1503 IDTPRVR-KQTRLYSAVKE--DELMEFSDLESD 1532
Score = 40 (19.1 bits), Expect = 7.0e-45, Sum P(4) = 7.0e-45
Identities = 14/54 (25%), Positives = 21/54 (38%)
Query: 683 FGSL-SALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDE 735
FG +A A PG K E + E + + + + GS R + E E
Sbjct: 2100 FGQTPAATPAAPGQEDKAGAAEAKAREASEKPEGKEEEEAEGSGKDQRQDREAE 2153
Score = 39 (18.8 bits), Expect = 1.9e-45, Sum P(3) = 1.9e-45
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 710 AVSGDSHMDHQQSGSWTHDRDEGED 734
AVS + D + + S + RDE D
Sbjct: 2204 AVSRGKNFDEESNASMSTARDETRD 2228
>RGD|1594200 [details] [associations]
symbol:LOC680231 "similar to chromodomain helicase DNA binding
protein 9" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:1594200 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 OrthoDB:EOG4548XQ IPI:IPI00957597
Ensembl:ENSRNOT00000018201 Uniprot:D3ZVE2
Length = 2881
Score = 541 (195.5 bits), Expect = 9.0e-46, Sum P(3) = 9.0e-46
Identities = 157/465 (33%), Positives = 233/465 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
W+ E W ++ + Y G+ R + E+ A +F ++TT+E I+
Sbjct: 922 WEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILG 980
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
+L+ ++W+ +IIDEA R+K++ L L + ++LLTGTPLQN
Sbjct: 981 GCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLH 1040
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + F F L+TE++V +L IL+P MLRR
Sbjct: 1041 FLEPLRFPSESTFMQEFGD---------------LKTEEQV---QKLQAILKPMMLRRLK 1082
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
EDVE L PK ++ ++ IQ Y R E + K Q V
Sbjct: 1083 EDVEKRLAPKEETIIEVELTNIQKKYY---------RAILEKNFSFLSKGA-GQTNV-PN 1131
Query: 233 LNNRCMELRKTCNHPLL--------------NY-PYFSDLSKDFLVKSCGKLWILDRILI 277
L N MELRK CNHP L Y P SD +++S GKL ++D++L
Sbjct: 1132 LVNTMMELRKCCNHPYLIKGAEEKIIGEFRDTYNPSASDFHLQAMIQSAGKLVLIDKLLP 1191
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
K++ GH+VL+FS M + LDILE+YL ++ +Y RIDG R++AI F+ DSD F
Sbjct: 1192 KMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 1251
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y +V +
Sbjct: 1252 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKV-YR--LVTR 1308
Query: 398 ISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 438
+S+++E D L+ G + ++G+D + I+ L + I+
Sbjct: 1309 -NSYEREMFDRASLKLGLDKAVLQSMSGRDSNVSGIQQLSKKEIE 1352
Score = 50 (22.7 bits), Expect = 9.0e-46, Sum P(3) = 9.0e-46
Identities = 35/166 (21%), Positives = 67/166 (40%)
Query: 721 QSGSWTHDRDEGEDEQVLQPKIK-RKRSIRVRPRHTV--ERPEERSCTDTPLHRGDSSLL 777
+S S + E+E + + + R +S V P++ V + P E+ D ++
Sbjct: 2049 KSESLAEEPQSSEEESMSSMETRTRVKSEPVSPKNGVLSQAPGEQKSGGKS--ETDRRMV 2106
Query: 778 PFQMDNKYPAQLRTDTEMKAHG-ESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRA-SLK 835
+ + P + G ES+S SE SS S R+ S ++ SR+ S
Sbjct: 2107 AARTEPLTPNPASKKQRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSS 2166
Query: 836 TGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRR 881
+ +C +A S +++S SS+ + + +Q+R
Sbjct: 2167 SSSSSC------SSASSSSSSSSSSSSSSSSSSSEESDSEEEVQKR 2206
Score = 41 (19.5 bits), Expect = 9.0e-46, Sum P(3) = 9.0e-46
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 556 GVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 594
G +S I+T R R K+ + DE+ E SEA S+
Sbjct: 1438 GRNSLVIDTPRIR----KQTRPFSATKDELAELSEAESE 1472
Score = 41 (19.5 bits), Expect = 7.8e-45, Sum P(3) = 7.8e-45
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 965 EVRSEARKVHDLFFDLLKIAFPDTD 989
+VR +A + H F+ LK+ P+ D
Sbjct: 1934 KVREQALR-HPQLFERLKLCHPNPD 1957
Score = 39 (18.8 bits), Expect = 3.3e-44, Sum P(3) = 3.3e-44
Identities = 14/66 (21%), Positives = 27/66 (40%)
Query: 530 STKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYS 589
S+ +++ ++ S S + S+ S E + K + P+ K D+E
Sbjct: 2164 SSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSEEEVQKREGTPHAKAYDEESVASL 2223
Query: 590 EASSDE 595
A+ DE
Sbjct: 2224 SATQDE 2229
Score = 37 (18.1 bits), Expect = 2.0e-44, Sum P(3) = 2.0e-44
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 806 HDQSEPSSKSRRNLPSRKIANAPKSRASLK 835
H+QS SK ++++ ++ K LK
Sbjct: 2327 HEQSPQMSKVKKHVREKEFTVKIKDEGGLK 2356
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 514 (186.0 bits), Expect = 1.1e-45, P = 1.1e-45
Identities = 153/481 (31%), Positives = 256/481 (53%)
Query: 147 LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATG 206
L E++++II+RLH ++ PF+LRR+ +VE LP K ++L+C MSA Q Y + G
Sbjct: 587 LTDEEELLIINRLHHVIRPFLLRRKKSEVEKFLPGKTQVILKCDMSAWQKLYYKQVTDVG 646
Query: 207 TLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPY-FSDLSKDFLVKS 265
+ + + K K+L N M+LRK CNHP L ++ K +V++
Sbjct: 647 RVGLHSGNGKS-------------KSLQNLTMQLRKCCNHPYLFVGADYNMCKKPEIVRA 693
Query: 266 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 325
GK +LDR+L KL++ GHR+LLFS MT+L+D+LE YL +Y R+DG+T + R
Sbjct: 694 SGKFELLDRLLPKLKKAGHRILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGIL 753
Query: 326 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 385
+ FN DS F+FLLS RA G GLNLQ+ADT+II+D D NP+ ++QA RAHRIGQK+E
Sbjct: 754 LKQFNEPDSPYFMFLLSTRAGGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRIGQKKE 813
Query: 386 VKVIYMEAV--VDKISSHQKEDELRSGGTVDLEDDL-----AGKDRYIGSIEGLIRNNIQ 438
V+V + ++ ++++ + + ++ V ++ L +DR +E ++
Sbjct: 814 VRVFVLVSIGSIEEVILERAKQKMGIDAKV-IQAGLFNTTSTAQDRR-EMLEEIMSKGTS 871
Query: 439 QYKIDMADE-VINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQE--VNRMIA 495
D+ E IN R RT EE E + DEER ++ + ++E V
Sbjct: 872 SLGEDVPSEREIN--RLAART--EEEFWMFEQM--DEERRKKENYKTRLMEEKEVPEWAY 925
Query: 496 RSEDEVELFDQMDEEFGWI------EEMTRYDQVP--KWLRA-STKEVNATIANLSKK-- 544
SE + + + + FG + +E D + +W++A +++ +A+ + +K
Sbjct: 926 TSETQEDKTNAKNH-FGSLTGKRKRKEAVYSDSLSDLQWMKAMESEDEDASKVSQKRKRT 984
Query: 545 PSKNILF-GSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGE--YS-EASSDERNGYP 600
+K + GS E + E++ + +K + KE ++E + +S + + +R+ YP
Sbjct: 985 DTKTRMSNGSKAEAVLSESDEEKEEEEEERKEESGKESEEENEKPLHSWKTNKKKRSRYP 1044
Query: 601 V 601
V
Sbjct: 1045 V 1045
Score = 418 (152.2 bits), Expect = 6.4e-34, Sum P(2) = 6.4e-34
Identities = 84/226 (37%), Positives = 133/226 (58%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W++E W PS+S Y G+K++R+ + ++ +A KFNVL+T Y+ IM D++ L K+DW
Sbjct: 450 WENEFALWAPSISAFLYDGSKEKRTEIRAR-IAGGKFNVLITHYDLIMRDKAFLKKIDWN 508
Query: 64 YIIIDEAQRMKDRESVLARDLDR-YRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNR 122
Y+I+DE R+K+ E LA+ L YR +RRLLLTGTP+QN P +F++
Sbjct: 509 YMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSI 568
Query: 123 KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPK 182
F +WF+ PF + G D E++++II+RLH ++ PF+LRR+ +VE LP K
Sbjct: 569 HNFEEWFNTPFAECGSASLTD------EEELLIINRLHHVIRPFLLRRKKSEVEKFLPGK 622
Query: 183 VSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 228
++L+C MSA Q Y + G + + + K + +N Q +
Sbjct: 623 TQVILKCDMSAWQKLYYKQVTDVGRVGLHSGNGKSKSLQNLTMQLR 668
Score = 40 (19.1 bits), Expect = 6.4e-34, Sum P(2) = 6.4e-34
Identities = 10/48 (20%), Positives = 27/48 (56%)
Query: 866 GSSNFSAKMSDVIQRRCK-NVISKLQRRIEKEGHQIVPLLTDLWKRIE 912
G+ K ++++ K ++ +L +++K GH+I+ L + + + I+
Sbjct: 679 GADYNMCKKPEIVRASGKFELLDRLLPKLKKAGHRIL-LFSQMTRLID 725
Score = 38 (18.4 bits), Expect = 1.0e-33, Sum P(2) = 1.0e-33
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 710 AVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRS 747
AV DS D Q W E EDE + KRKR+
Sbjct: 952 AVYSDSLSDLQ----WMKAM-ESEDEDASKVSQKRKRT 984
>UNIPROTKB|F1PTH3 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 Ensembl:ENSCAFT00000014716
Uniprot:F1PTH3
Length = 2715
Score = 539 (194.8 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
Identities = 151/411 (36%), Positives = 208/411 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA-----------ALKFNVLVTTYEFIMY 52
W+ E W ++ I Y G++ R + E+ KF+V++TT+E I+
Sbjct: 524 WEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILA 582
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
D +L K+ W +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 583 DCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLN 642
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + AF + F L+TE++V +L IL+P MLRR
Sbjct: 643 FLEPSQFPSETAFLEEFGD---------------LKTEEQV---KKLQSILKPMMLRRLK 684
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
+DVE +L PK ++ ++ IQ Y I + K Q N
Sbjct: 685 DDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLT----KGANQHN-------MPN 733
Query: 233 LNNRCMELRKTCNHP-LLN---YPYFSDLSK-------DF----LVKSCGKLWILDRILI 277
L N MELRK CNHP L+N D K DF ++++ GKL ++D++L
Sbjct: 734 LINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLP 793
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
KL GH+VL+FS M + LDILE+YL R+ Y RIDG R++AI F DSD F
Sbjct: 794 KLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRF 853
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV
Sbjct: 854 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV 904
Score = 48 (22.0 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 565 ERKRGPKGKKYPNYKEVDDEIGEYSE--ASSDER 596
+R R K K+ N E +DE+ E+SE + SDER
Sbjct: 1046 DRPRVRKQTKHYNSFE-EDELMEFSELDSDSDER 1078
Score = 42 (19.8 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 714 DSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPR--HTVE 757
D ++ + + S TH DE E+E+ + + +R RP H E
Sbjct: 1852 DKSLESKLALSQTHS-DEEEEEENEEENVGVATGLRERPEVLHLAE 1896
Score = 38 (18.4 bits), Expect = 1.5e-45, Sum P(2) = 1.5e-45
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 362 DPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKE---DELRSGG 411
D + +NEE+ V A + ++ EV + E D + + +E + GG
Sbjct: 1867 DEEEEEENEEENVGVATGLRERPEVLHL-AEPTADTLREKSRSFHVEEAKRGG 1918
>UNIPROTKB|J9P0F6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 CTD:84181 KO:K14436 GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 RefSeq:XP_534421.3
Ensembl:ENSCAFT00000048852 GeneID:477230 KEGG:cfa:477230
Uniprot:J9P0F6
Length = 2715
Score = 539 (194.8 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
Identities = 151/411 (36%), Positives = 208/411 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA-----------ALKFNVLVTTYEFIMY 52
W+ E W ++ I Y G++ R + E+ KF+V++TT+E I+
Sbjct: 524 WEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILA 582
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
D +L K+ W +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 583 DCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLN 642
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + AF + F L+TE++V +L IL+P MLRR
Sbjct: 643 FLEPSQFPSETAFLEEFGD---------------LKTEEQV---KKLQSILKPMMLRRLK 684
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
+DVE +L PK ++ ++ IQ Y I + K Q N
Sbjct: 685 DDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLT----KGANQHN-------MPN 733
Query: 233 LNNRCMELRKTCNHP-LLN---YPYFSDLSK-------DF----LVKSCGKLWILDRILI 277
L N MELRK CNHP L+N D K DF ++++ GKL ++D++L
Sbjct: 734 LINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLP 793
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
KL GH+VL+FS M + LDILE+YL R+ Y RIDG R++AI F DSD F
Sbjct: 794 KLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRF 853
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV
Sbjct: 854 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV 904
Score = 48 (22.0 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 565 ERKRGPKGKKYPNYKEVDDEIGEYSE--ASSDER 596
+R R K K+ N E +DE+ E+SE + SDER
Sbjct: 1046 DRPRVRKQTKHYNSFE-EDELMEFSELDSDSDER 1078
Score = 42 (19.8 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 714 DSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPR--HTVE 757
D ++ + + S TH DE E+E+ + + +R RP H E
Sbjct: 1852 DKSLESKLALSQTHS-DEEEEEENEEENVGVATGLRERPEVLHLAE 1896
Score = 38 (18.4 bits), Expect = 1.5e-45, Sum P(2) = 1.5e-45
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 362 DPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKE---DELRSGG 411
D + +NEE+ V A + ++ EV + E D + + +E + GG
Sbjct: 1867 DEEEEEENEEENVGVATGLRERPEVLHL-AEPTADTLREKSRSFHVEEAKRGG 1918
>UNIPROTKB|Q9P2D1 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] [GO:0008015 "blood circulation"
evidence=IEA] [GO:0030540 "female genitalia development"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0043584 "nose development" evidence=IMP] [GO:0048806 "genitalia
development" evidence=IMP] [GO:0060021 "palate development"
evidence=IMP] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0001501 "skeletal system development"
evidence=IMP] [GO:0050890 "cognition" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP] [GO:0021545
"cranial nerve development" evidence=IMP] [GO:0060123 "regulation
of growth hormone secretion" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=TAS] [GO:0030217 "T cell differentiation"
evidence=IMP] [GO:0060173 "limb development" evidence=IMP]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0060324 "face development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0008015 GO:GO:0003007 GO:GO:0050890
GO:GO:0001701 GO:GO:0040018 GO:GO:0007417 GO:GO:0006351
GO:GO:0003682 GO:GO:0016568 GO:GO:0048806 GO:GO:0042472
GO:GO:0001501 GO:GO:0060041 GO:GO:0007605 GO:GO:0007512
GO:GO:0004386 GO:GO:0035116 GO:GO:0060324 GO:GO:0060021
GO:GO:0060173 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150 CTD:55636
KO:K14437 OrthoDB:EOG4MCWZD EMBL:AC023102 EMBL:AC113143
EMBL:AB037837 EMBL:AK000364 EMBL:AK000368 EMBL:BC014681
EMBL:BC051264 EMBL:BC053890 EMBL:BC068000 EMBL:BC080627
EMBL:BC110818 IPI:IPI00472901 IPI:IPI00794880 RefSeq:NP_060250.2
UniGene:Hs.20395 UniGene:Hs.733236 PDB:2CKC PDB:2V0E PDB:2V0F
PDBsum:2CKC PDBsum:2V0E PDBsum:2V0F ProteinModelPortal:Q9P2D1
SMR:Q9P2D1 DIP:DIP-48685N IntAct:Q9P2D1 STRING:Q9P2D1
PhosphoSite:Q9P2D1 DMDM:148877246 PaxDb:Q9P2D1 PRIDE:Q9P2D1
Ensembl:ENST00000307121 Ensembl:ENST00000423902
Ensembl:ENST00000525508 GeneID:55636 KEGG:hsa:55636 UCSC:uc003xue.3
GeneCards:GC08P061642 H-InvDB:HIX0007533 HGNC:HGNC:20626 MIM:214800
MIM:608765 MIM:608892 MIM:612370 neXtProt:NX_Q9P2D1 Orphanet:138
Orphanet:478 Orphanet:432 PharmGKB:PA134948695 InParanoid:Q9P2D1
OMA:TFGVIFD EvolutionaryTrace:Q9P2D1 GenomeRNAi:55636 NextBio:60291
ArrayExpress:Q9P2D1 Bgee:Q9P2D1 CleanEx:HS_CHD7
Genevestigator:Q9P2D1 GermOnline:ENSG00000171316 GO:GO:0021545
GO:GO:0043584 GO:GO:0060123 Uniprot:Q9P2D1
Length = 2997
Score = 546 (197.3 bits), Expect = 1.6e-45, Sum P(3) = 1.6e-45
Identities = 159/465 (34%), Positives = 238/465 (51%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
W+ E W ++ + Y G++ R + E+ + KF+ ++TT+E I+
Sbjct: 1031 WEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILT 1089
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
D +L + W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 1090 DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLH 1149
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + F F L+TE++V +L IL+P MLRR
Sbjct: 1150 FLEPSRFPSETTFMQEFGD---------------LKTEEQV---QKLQAILKPMMLRRLK 1191
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
EDVE +L PK ++ ++ IQ Y R E + K QA V
Sbjct: 1192 EDVEKNLAPKEETIIEVELTNIQKKYY---------RAILEKNFTFLSKGG-GQANVPNL 1241
Query: 233 LNNRCMELRKTCNHP-LLN------YPYFSDL----SKDF----LVKSCGKLWILDRILI 277
LN MELRK CNHP L+N F + S DF ++++ GKL ++D++L
Sbjct: 1242 LNTM-MELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLP 1300
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
KL+ GHRVL+FS M + LDILE+YL R+ Y RIDG R++AI F+ DSD F
Sbjct: 1301 KLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRF 1360
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VK IY ++ +
Sbjct: 1361 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVK-IYR--LITR 1417
Query: 398 ISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 438
+S+++E D+ L+ G + ++G++ ++ L + I+
Sbjct: 1418 -NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE 1461
Score = 48 (22.0 bits), Expect = 4.6e-45, Sum P(4) = 4.6e-45
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 556 GVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDER 596
G D GE + E + P+ K P DEI E++ + S+++
Sbjct: 1842 GGDGGEFDREDE-DPEYK--PTRTPFKDEIDEFANSPSEDK 1879
Score = 46 (21.3 bits), Expect = 1.5e-44, Sum P(4) = 1.5e-44
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 547 KNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERNG 598
KN L G +G D+G + KG + ++++D+ + SE SS G
Sbjct: 2215 KNELKGVEVGADTGS----KSISEKGSEEDEEEKLEDD--DKSEESSQPEAG 2260
Score = 42 (19.8 bits), Expect = 1.6e-45, Sum P(3) = 1.6e-45
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 562 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 594
I+T R R + + Y KE DE+ E+S+ SD
Sbjct: 1553 IDTPRVR-KQTRLYSAVKE--DELMEFSDLESD 1582
Score = 42 (19.8 bits), Expect = 1.6e-45, Sum P(3) = 1.6e-45
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 807 DQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPG-HTED 848
D+SE SS+ SR +S AS+ T R G + ED
Sbjct: 2249 DKSEESSQPEAGAVSRGKNFDEESNASMSTARDETRDGFYMED 2291
Score = 39 (18.8 bits), Expect = 9.4e-45, Sum P(4) = 9.4e-45
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 710 AVSGDSHMDHQQSGSWTHDRDEGED 734
AVS + D + + S + RDE D
Sbjct: 2261 AVSRGKNFDEESNASMSTARDETRD 2285
Score = 38 (18.4 bits), Expect = 4.6e-45, Sum P(4) = 4.6e-45
Identities = 19/85 (22%), Positives = 35/85 (41%)
Query: 397 KISSHQKEDELRSGGTV--DLEDDLAGKDR--------YIGSIEGLIRNNIQQYKIDMAD 446
++ S KEDEL + D E+ K R Y S + N+ Y
Sbjct: 1563 RLYSAVKEDELMEFSDLESDSEEKPCAKPRRPQDKSQGYARSECFRVEKNLLVYGWGRWT 1622
Query: 447 EVINAGRFDQRTTHEERRMTLETLL 471
++++ GR+ ++ T ++ T+L
Sbjct: 1623 DILSHGRYKRQLTEQDVETICRTIL 1647
>UNIPROTKB|Q3L8U1 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid metabolic
process" evidence=TAS] [GO:0044281 "small molecule metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_111217 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0044281
GO:GO:0003677 GO:GO:0044255 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:AY243500 EMBL:DQ333316
EMBL:AY647157 EMBL:AC007906 EMBL:AC079416 EMBL:BC140815
EMBL:AB002306 EMBL:AF150735 EMBL:AK022582 IPI:IPI00383105
IPI:IPI00746795 IPI:IPI00914955 RefSeq:NP_079410.4 UniGene:Hs.59159
UniGene:Hs.622347 ProteinModelPortal:Q3L8U1 SMR:Q3L8U1
IntAct:Q3L8U1 STRING:Q3L8U1 PhosphoSite:Q3L8U1 DMDM:215273951
PaxDb:Q3L8U1 PRIDE:Q3L8U1 Ensembl:ENST00000398510
Ensembl:ENST00000447540 Ensembl:ENST00000564845
Ensembl:ENST00000566029 GeneID:80205 KEGG:hsa:80205 UCSC:uc002egy.3
UCSC:uc002ehb.3 UCSC:uc002ehc.3 CTD:80205 GeneCards:GC16P053041
HGNC:HGNC:25701 neXtProt:NX_Q3L8U1 PharmGKB:PA128394727
InParanoid:Q3L8U1 KO:K14438 OMA:MWGHQTA GenomeRNAi:80205
NextBio:70576 ArrayExpress:Q3L8U1 Bgee:Q3L8U1 CleanEx:HS_CHD9
Genevestigator:Q3L8U1 GermOnline:ENSG00000177200 Uniprot:Q3L8U1
Length = 2897
Score = 544 (196.6 bits), Expect = 1.8e-45, Sum P(3) = 1.8e-45
Identities = 157/465 (33%), Positives = 234/465 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
W+ E W ++ + Y G+ R + E+ A +F ++TT+E I+
Sbjct: 923 WEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILG 981
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
+L+ ++W+ +IIDEA R+K++ L L + ++LLTGTPLQN
Sbjct: 982 GCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLH 1041
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + F F L+TE++V +L IL+P MLRR
Sbjct: 1042 FLEPLRFPSESTFMQEFGD---------------LKTEEQV---QKLQAILKPMMLRRLK 1083
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
EDVE L PK ++ ++ IQ Y R E + K Q V
Sbjct: 1084 EDVEKKLAPKEETIIEVELTNIQKKYY---------RAILEKNFSFLSKGA-GQTNV-PN 1132
Query: 233 LNNRCMELRKTCNHPLL--------------NY-PYFSDLSKDFLVKSCGKLWILDRILI 277
L N MELRK CNHP L Y P SD +++S GKL ++D++L
Sbjct: 1133 LVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLP 1192
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
K++ GH+VL+FS M + LDILE+YL ++ +Y RIDG R++AI F+ DSD F
Sbjct: 1193 KMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 1252
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y +V +
Sbjct: 1253 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKV-YR--LVTR 1309
Query: 398 ISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 438
+S+++E D L+ G + ++G++ +G I+ L + I+
Sbjct: 1310 -NSYEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKEIE 1353
Score = 44 (20.5 bits), Expect = 1.8e-45, Sum P(3) = 1.8e-45
Identities = 21/99 (21%), Positives = 39/99 (39%)
Query: 806 HDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANAS 865
HDQS SK ++++ ++ K LK + + A K +DG+ A
Sbjct: 2327 HDQSTQMSKVKKHVREKEFTVKIKDEGGLK------LTFQKQGLAQ--KRPFDGE-DGAL 2377
Query: 866 GSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLL 904
G + ++ + +Q + + + I G I P L
Sbjct: 2378 GQQQYLTRLRE-LQSASETSLVNFPKSIPVSGTSIQPTL 2415
Score = 41 (19.5 bits), Expect = 1.8e-45, Sum P(3) = 1.8e-45
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 556 GVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 594
G +S I+T R R K+ + DE+ E SEA S+
Sbjct: 1439 GRNSLVIDTPRIR----KQTRPFSATKDELAELSEAESE 1473
Score = 41 (19.5 bits), Expect = 2.1e-44, Sum P(4) = 2.1e-44
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 965 EVRSEARKVHDLFFDLLKIAFPDTD 989
+VR +A + H F+ LK+ P+ D
Sbjct: 1933 KVREQALR-HPQLFERLKLCHPNPD 1956
Score = 41 (19.5 bits), Expect = 2.1e-44, Sum P(4) = 2.1e-44
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 1129 KDMRHTQQTTHQHGWANQPAQPANGGSGAVGWANPVKRLR 1168
KD + T + G A + +P +G GA+G + RLR
Sbjct: 2350 KDEGGLKLTFQKQGLAQK--RPFDGEDGALGQQQYLTRLR 2387
>ZFIN|ZDB-GENE-070912-179 [details] [associations]
symbol:chd7 "chromodomain helicase DNA binding
protein 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007368 "determination of left/right symmetry"
evidence=IMP] [GO:0001756 "somitogenesis" evidence=IMP] [GO:0060041
"retina development in camera-type eye" evidence=IMP] [GO:0021602
"cranial nerve morphogenesis" evidence=IMP] [GO:0001947 "heart
looping" evidence=IMP] [GO:0030282 "bone mineralization"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0014029 "neural crest formation" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-070912-179 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0001756 GO:GO:0042472
GO:GO:0060041 GO:GO:0004386 GO:GO:0001947 GO:GO:0030282
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
GO:GO:0021602 EMBL:CR450710 GO:GO:0014029 IPI:IPI00493585
Ensembl:ENSDART00000016208 Ensembl:ENSDART00000135230
Uniprot:F1QGL1
Length = 3140
Score = 401 (146.2 bits), Expect = 2.0e-45, Sum P(4) = 2.0e-45
Identities = 112/311 (36%), Positives = 169/311 (54%)
Query: 147 LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATG 206
L+TE++V +L IL+P MLRR EDVE +L PK ++ ++ +Q Y I
Sbjct: 1213 LKTEEQV---QKLQGILKPMMLRRLKEDVEKNLAPKEETIIEVELTNVQKKYYRAILEKN 1269
Query: 207 TLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----- 261
+ + V LN MELRK CNHP L + ++F
Sbjct: 1270 FAFLSKSGAGGGSGGGG--GSNVPNLLNTM-MELRKCCNHPYLINGAEEKIMEEFRETHP 1326
Query: 262 ----------LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYR 311
++++ GKL ++D++L KL+ GHRVL+FS M + LDILE+YL R+ Y
Sbjct: 1327 LDQPEFHLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYE 1386
Query: 312 RIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEE 371
RIDG R++AI F+ DSD F+FLL RA G G+NL +ADT II+D D NP+N+
Sbjct: 1387 RIDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDL 1446
Query: 372 QAVARAHRIGQKREVKVIYMEAVVDKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIG 427
QA AR HRIGQ + VK IY ++ + +S+++E D+ L+ G + ++G++
Sbjct: 1447 QAQARCHRIGQSKSVK-IYR--LITR-NSYEREMFDKASLKLGLDKAVLQSMSGRENAAN 1502
Query: 428 SIEGLIRNNIQ 438
++ L + I+
Sbjct: 1503 GVQQLSKKEIE 1513
Score = 170 (64.9 bits), Expect = 2.0e-45, Sum P(4) = 2.0e-45
Identities = 41/137 (29%), Positives = 65/137 (47%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
W+ E W ++ + Y G++ R + + E+ A KF+ ++TT+E I+
Sbjct: 1075 WEREFRTWT-ELNVVVYHGSQASRKTIQAYEMYYRDTQGRIIKGAYKFHAVITTFEMILT 1133
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
D +L V W+ +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 1134 DCPELRNVPWRCVIIDEAHRLKNRNCKLLEGLKMMDMEHKVLLTGTPLQNTVEELFSLLN 1193
Query: 113 XXXPEVFDNRKAFHDWF 129
P+ F + F F
Sbjct: 1194 FLEPDRFPSESTFMQEF 1210
Score = 61 (26.5 bits), Expect = 2.0e-45, Sum P(4) = 2.0e-45
Identities = 35/144 (24%), Positives = 65/144 (45%)
Query: 702 DELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQV-LQPK--IKRKRSI-RVRPRH-TV 756
D EE A+S + +++ + + E ++E++ ++ K + K + +V P V
Sbjct: 2261 DVKEEKSEALSPKKEVKNEEDENGLGPKQEPKEEKMEVEEKDVTEFKTDVEQVCPVDGMV 2320
Query: 757 ER-PEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSL-RHDQSEPSSK 814
E+ P ++ TDT D + Q + + P + TE + E + D+SE SS+
Sbjct: 2321 EKKPMDQEPTDTLPSSEDKNA---QDEKELPTGNKLSTEKASEDEEEKMDEDDKSEKSSQ 2377
Query: 815 SRRNLPSRKIANAPKSRASLKTGR 838
+ S + +S ASL T R
Sbjct: 2378 AEVGALSERKNFDEESNASLSTAR 2401
Score = 55 (24.4 bits), Expect = 2.0e-45, Sum P(4) = 2.0e-45
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 562 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPVQ 602
I+T R R + + Y + KE D++ EYSE SD + P+Q
Sbjct: 1605 IDTPRVR-KQTRHYSSMKE--DDLMEYSELESDSEDK-PIQ 1641
Score = 54 (24.1 bits), Expect = 4.0e-07, Sum P(3) = 4.0e-07
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 370 EEQAVARAHRIGQKREVKVIYMEAVVDKIS-SHQKEDELRSGGTVDLEDDLAGKDRYIGS 428
E++ + R Q V +E + + S +E + ++ + L+DDLAG + S
Sbjct: 3054 EDKESDKGPRTNQDPNASVADVETADNTLEDSDSEESQNKTADSSVLDDDLAGPAEEMDS 3113
Query: 429 IEG 431
+EG
Sbjct: 3114 MEG 3116
Score = 49 (22.3 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 26/115 (22%), Positives = 50/115 (43%)
Query: 413 VDLEDDLAGKDRY-IGSIEGLIRNNIQQYKIDM-----ADEVI-----NAGRFDQRTTHE 461
+D+ +D + RY I+G +R N++Q ID +D + AG T
Sbjct: 1371 LDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAA 1430
Query: 462 ERRMTLETLLHDEE--RYQETVHDVPSLQEVN--RMIARSEDEVELFDQMDEEFG 512
+ + ++ + + + Q H + + V R+I R+ E E+FD+ + G
Sbjct: 1431 DTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLG 1485
Score = 47 (21.6 bits), Expect = 8.0e-08, Sum P(3) = 8.0e-08
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 128 WFSQPFQKEGPTHNADDDW--LETEKKVII 155
W QPF + PT DW L+ +K ++I
Sbjct: 1824 WIPQPFHADVPT-----DWWDLDADKSLLI 1848
Score = 43 (20.2 bits), Expect = 4.1e-43, Sum P(3) = 4.1e-43
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 559 SGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 594
+GE + E +GP+ + PN D E + + SD
Sbjct: 3052 TGE-DKESDKGPRTNQDPNASVADVETADNTLEDSD 3086
Score = 43 (20.2 bits), Expect = 1.2e-42, Sum P(5) = 1.2e-42
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 780 QMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIA---NAPKSRAS--L 834
Q +++ ++ +TD E K GE + Q+E SS++ + + A NA + A+ +
Sbjct: 2938 QAESEENSKPKTDEETK--GEGDEKEEKQAEKSSETVESADATGDAAALNAAAAAAAAGM 2995
Query: 835 KTGRLNCMP 843
TG L P
Sbjct: 2996 STGTLAFNP 3004
Score = 39 (18.8 bits), Expect = 1.2e-42, Sum P(5) = 1.2e-42
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 726 THDRDEGEDEQVLQPKIKRKR 746
TH R++ E + +P +R+R
Sbjct: 1971 THKREQLRQEAMAKPDRRRRR 1991
Score = 37 (18.1 bits), Expect = 1.0e-41, Sum P(4) = 1.0e-41
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 565 ERKRGPKGKKYPNYKEVDDEIGEYSEASSDERN 597
+ K P G K K +DE + E E++
Sbjct: 2343 DEKELPTGNKLSTEKASEDEEEKMDEDDKSEKS 2375
Score = 37 (18.1 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 1151 ANGGSGAVGWANPVKRLRT 1169
A GGSG G +N L T
Sbjct: 1278 AGGGSGGGGGSNVPNLLNT 1296
>UNIPROTKB|Q06A37 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:DQ978381 IPI:IPI00590082
RefSeq:NP_001071054.1 UniGene:Gga.20865 ProteinModelPortal:Q06A37
SMR:Q06A37 GeneID:421140 KEGG:gga:421140 CTD:55636
HOGENOM:HOG000246942 InParanoid:Q06A37 KO:K14437 OrthoDB:EOG4MCWZD
NextBio:20823957 Uniprot:Q06A37
Length = 3011
Score = 543 (196.2 bits), Expect = 2.1e-45, Sum P(3) = 2.1e-45
Identities = 159/465 (34%), Positives = 238/465 (51%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
W+ E W ++ + Y G++ R + E+ + KF+ ++TT+E I+
Sbjct: 1032 WEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILT 1090
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
D +L + W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 1091 DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLH 1150
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + F F L+TE++V +L IL+P MLRR
Sbjct: 1151 FLEPGRFPSETTFMQEFGD---------------LKTEEQV---QKLQAILKPMMLRRLK 1192
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
EDVE +L PK ++ ++ IQ Y R E + K QA V
Sbjct: 1193 EDVEKNLAPKEETIIEVELTNIQKKYY---------RAILEKNFAFLSKGG-GQANVPNL 1242
Query: 233 LNNRCMELRKTCNHP-LLN------YPYFSDL----SKDF----LVKSCGKLWILDRILI 277
LN MELRK CNHP L+N F + S DF ++++ GKL ++D++L
Sbjct: 1243 LNTM-MELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLIDKLLP 1301
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
KL+ GHRVL+FS M + LDILE+YL R+ Y RIDG R++AI F+ DSD F
Sbjct: 1302 KLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPDSDRF 1361
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VK IY ++ +
Sbjct: 1362 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVK-IYR--LITR 1418
Query: 398 ISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 438
+S+++E D+ L+ G + ++G++ ++ L + I+
Sbjct: 1419 -NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIE 1462
Score = 44 (20.5 bits), Expect = 2.1e-45, Sum P(3) = 2.1e-45
Identities = 28/135 (20%), Positives = 49/135 (36%)
Query: 717 MDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGD--S 774
+ ++S T + EG + P K K I+ ++ ++ C D G
Sbjct: 2165 VQEEKSTEQTESKVEGSEN----PAAKEKSDIK-EETDIADKDTKQDC-DAEAETGSVKC 2218
Query: 775 SLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASL 834
L +M + ++ + E D+SE SS+ S+ +S AS+
Sbjct: 2219 ELKDIEMSTDVDPKSISEKGSEEDEEEKLDDDDKSEESSQPEAGAVSQGKNFDEESNASM 2278
Query: 835 KTGRLNCMPG-HTED 848
T R G + ED
Sbjct: 2279 STARDETRDGFYMED 2293
Score = 42 (19.8 bits), Expect = 2.1e-45, Sum P(3) = 2.1e-45
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 562 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 594
I+T R R + + Y KE DE+ E+S+ SD
Sbjct: 1554 IDTPRVR-KQTRLYSAVKE--DELMEFSDLESD 1583
Score = 40 (19.1 bits), Expect = 5.6e-45, Sum P(3) = 5.6e-45
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 675 VSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEI-AVSGDSHMDHQQSGSWTHDRDEGE 733
V P S + GS E + K +E + E AVS + D + + S + RDE
Sbjct: 2229 VDPKSISEKGSEEDEEEKLDDDDKS--EESSQPEAGAVSQGKNFDEESNASMSTARDETR 2286
Query: 734 D 734
D
Sbjct: 2287 D 2287
Score = 37 (18.1 bits), Expect = 7.1e-45, Sum P(3) = 7.1e-45
Identities = 7/39 (17%), Positives = 19/39 (48%)
Query: 433 IRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLL 471
+ N+ Y ++++ GR+ ++ T ++ T+L
Sbjct: 1610 VEKNLLVYGWGRWTDILSHGRYKRQLTEQDVETICRTIL 1648
>FB|FBgn0032157 [details] [associations]
symbol:Etl1 "Etl1 homologue" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:AE014134 GO:GO:0003677
GO:GO:0006281 GO:GO:0016568 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 OMA:KEERYMA EMBL:AY060597
RefSeq:NP_001033889.1 RefSeq:NP_001033890.1 RefSeq:NP_609320.2
UniGene:Dm.3953 ProteinModelPortal:Q9VL72 SMR:Q9VL72 IntAct:Q9VL72
STRING:Q9VL72 PRIDE:Q9VL72 EnsemblMetazoa:FBtr0079901 GeneID:34311
KEGG:dme:Dmel_CG5899 UCSC:CG5899-RA FlyBase:FBgn0032157
InParanoid:Q9VL72 PhylomeDB:Q9VL72 GenomeRNAi:34311 NextBio:787873
Bgee:Q9VL72 Uniprot:Q9VL72
Length = 844
Score = 324 (119.1 bits), Expect = 2.3e-45, Sum P(2) = 2.3e-45
Identities = 74/182 (40%), Positives = 112/182 (61%)
Query: 246 HPLLNYPYFSDLS-KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ 304
+ ++N F D+ D L+ GK LD +L KL+ GHRVLLFS T +LDI+EEYL+
Sbjct: 630 YQMMNKHEFYDVKIPDNLICDSGKFLYLDTLLPKLKAEGHRVLLFSQFTMMLDIVEEYLR 689
Query: 305 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD 364
R+ + R+DG T++ R+ I DFN DS F+FLLS +A G G+NL +ADT +I+D D
Sbjct: 690 IRKFGFCRLDGATAVNVRQDLITDFNGDDS-IFVFLLSTKAGGVGINLTAADTCVIHDID 748
Query: 365 PNPKNEEQAVARAHRIGQKREVKV--IYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGK 422
NP N++QA R HR+GQ+R V + + E+ +++ E++L+ LE D+
Sbjct: 749 FNPYNDKQAEDRCHRMGQQRPVTIYRLISESTIEEGILMAAEEKLK------LEKDITSN 802
Query: 423 DR 424
++
Sbjct: 803 EK 804
Score = 243 (90.6 bits), Expect = 2.3e-45, Sum P(2) = 2.3e-45
Identities = 76/259 (29%), Positives = 128/259 (49%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRL---FSQEVAALKFNVLVTTYEFI--MYDRSKLS 58
W++E+ +W P + Y G++D+R R+ F+++ F+VL+TTY + + K+
Sbjct: 353 WEAEISRWCPELVVEKYHGSQDERRRMRGRFAKD-GFTGFDVLLTTYHIVGSTPEERKMF 411
Query: 59 KV-DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPE 117
+V Y+I DEA +K+ + +L + R+LLTGTPLQN+ P+
Sbjct: 412 RVCKLDYVIFDEAHMLKNMTTQRYANLITINARMRILLTGTPLQNNLLELISLLCFVMPK 471
Query: 118 VFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG 177
F K+ D F K+G + D+ + ++ I R +I++PF+LRR +DV
Sbjct: 472 FF--AKSIED-IKSLFAKKGKSDGDQDEVSQFQETQI--QRAKRIMKPFVLRRLKKDVLK 526
Query: 178 SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 237
+LP K+S+V + MS+ Q Y + VD + + +A +
Sbjct: 527 NLPKKLSLVEKVPMSSQQKIYYHEL-------VDYYSNNKGEVCSSSERAGIAIM----- 574
Query: 238 MELRKTCNHPLLNYPYFSD 256
ME+R+ NHPLL YF+D
Sbjct: 575 MEMRRIANHPLLMRHYFTD 593
>UNIPROTKB|F1N734 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:DAAA02036652 EMBL:DAAA02036653 EMBL:DAAA02036654
EMBL:DAAA02036655 IPI:IPI00924240 Ensembl:ENSBTAT00000061177
ArrayExpress:F1N734 Uniprot:F1N734
Length = 2720
Score = 538 (194.4 bits), Expect = 2.5e-45, Sum P(3) = 2.5e-45
Identities = 150/411 (36%), Positives = 206/411 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA-----------ALKFNVLVTTYEFIMY 52
W+ E W ++ I Y G++ R + E+ KF+V++TT+E I+
Sbjct: 523 WEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILA 581
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
D +L K+ W +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 582 DCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLN 641
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + AF + F L+TE++V +L IL+P MLRR
Sbjct: 642 FLEPSQFPSETAFLEEFGD---------------LKTEEQV---KKLQSILKPMMLRRLK 683
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
+DVE +L PK ++ ++ IQ Y I + K Q N
Sbjct: 684 DDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLS----KGANQHN-------MPN 732
Query: 233 LNNRCMELRKTCNHPLL----NYPYFSDLSK-------DF----LVKSCGKLWILDRILI 277
L N MELRK CNHP L D K DF ++++ GKL ++D++L
Sbjct: 733 LINTMMELRKCCNHPYLISGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLP 792
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
KL GH+VL+FS M + LDILE+YL R+ Y RIDG R++AI F DSD F
Sbjct: 793 KLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRF 852
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV
Sbjct: 853 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV 903
Score = 48 (22.0 bits), Expect = 2.5e-45, Sum P(3) = 2.5e-45
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 565 ERKRGPKGKKYPNYKEVDDEIGEYSE--ASSDER 596
+R R K K+ N E +DE+ E+SE + SDER
Sbjct: 1045 DRPRVRKQTKHYNSFE-EDELMEFSELDSDSDER 1077
Score = 41 (19.5 bits), Expect = 2.5e-45, Sum P(3) = 2.5e-45
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 778 PFQMDNKYPAQLRTDTEMKAHGESN 802
P D ++ AQ R +HG++N
Sbjct: 2696 PAPPDREHAAQAREGGPQDSHGDTN 2720
>UNIPROTKB|Q8TD26 [details] [associations]
symbol:CHD6 "Chromodomain-helicase-DNA-binding protein 6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0003682
"chromatin binding" evidence=NAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0007399 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 CleanEx:HS_CHD5 EMBL:AY034072
EMBL:AL121674 EMBL:AL031669 EMBL:AL031667 EMBL:BC021907
EMBL:BC039860 EMBL:BC040016 EMBL:AF525085 EMBL:AB037756
EMBL:AK026022 IPI:IPI00220289 IPI:IPI00395823 IPI:IPI00513717
RefSeq:NP_115597.3 UniGene:Hs.740645 UniGene:Hs.741381 PDB:2EPB
PDBsum:2EPB ProteinModelPortal:Q8TD26 SMR:Q8TD26 IntAct:Q8TD26
MINT:MINT-1197235 STRING:Q8TD26 PhosphoSite:Q8TD26 DMDM:296439466
PaxDb:Q8TD26 PRIDE:Q8TD26 Ensembl:ENST00000373222
Ensembl:ENST00000373233 Ensembl:ENST00000440647 GeneID:84181
KEGG:hsa:84181 UCSC:uc002xka.1 UCSC:uc002xkc.3 CTD:84181
GeneCards:GC20M040030 H-InvDB:HIX0015824 H-InvDB:HIX0027712
HGNC:HGNC:19057 neXtProt:NX_Q8TD26 PharmGKB:PA134974700
HOVERGEN:HBG081150 InParanoid:Q8TD26 KO:K14436 OMA:CKWATME
OrthoDB:EOG4NP72J PhylomeDB:Q8TD26 ChiTaRS:CHD6
EvolutionaryTrace:Q8TD26 GenomeRNAi:84181 NextBio:73559
ArrayExpress:Q8TD26 Bgee:Q8TD26 CleanEx:HS_CHD6
Genevestigator:Q8TD26 GermOnline:ENSG00000124177 Uniprot:Q8TD26
Length = 2715
Score = 539 (194.8 bits), Expect = 3.1e-45, Sum P(3) = 3.1e-45
Identities = 151/411 (36%), Positives = 208/411 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA-----------ALKFNVLVTTYEFIMY 52
W+ E W ++ I Y G++ R + E+ KF+V++TT+E I+
Sbjct: 524 WEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFHVVITTFEMILA 582
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
D +L K+ W +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 583 DCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLN 642
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + AF + F L+TE++V +L IL+P MLRR
Sbjct: 643 FLEPSQFPSETAFLEEFGD---------------LKTEEQV---KKLQSILKPMMLRRLK 684
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
+DVE +L PK ++ ++ IQ Y I + K Q N
Sbjct: 685 DDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLT----KGANQHN-------MPN 733
Query: 233 LNNRCMELRKTCNHP-LLN---YPYFSDLSK-------DF----LVKSCGKLWILDRILI 277
L N MELRK CNHP L+N D K DF ++++ GKL ++D++L
Sbjct: 734 LINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLP 793
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
KL GH+VL+FS M + LDILE+YL R+ Y RIDG R++AI F DSD F
Sbjct: 794 KLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRF 853
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV
Sbjct: 854 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKV 904
Score = 48 (22.0 bits), Expect = 3.1e-45, Sum P(3) = 3.1e-45
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 565 ERKRGPKGKKYPNYKEVDDEIGEYSE--ASSDER 596
+R R K K+ N E +DE+ E+SE + SDER
Sbjct: 1046 DRPRVRKQTKHYNSFE-EDELMEFSELDSDSDER 1078
Score = 47 (21.6 bits), Expect = 3.9e-45, Sum P(3) = 3.9e-45
Identities = 15/66 (22%), Positives = 34/66 (51%)
Query: 362 DPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKE---DELRSGGTVDLEDD 418
+ + +NEE+ +A A +G++ EV +++ IS + + DE + G ++++ +
Sbjct: 1866 EEEEEEENEEENLAMAVGMGERPEV--LHLTEPTTNISREKNQGFQDETKKG-SLEVANQ 1922
Query: 419 LAGKDR 424
G R
Sbjct: 1923 TPGLQR 1928
Score = 39 (18.8 bits), Expect = 3.1e-45, Sum P(3) = 3.1e-45
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 787 AQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRA 832
A L T T + G + S + SS++ +++PS+ + + + +A
Sbjct: 2322 ATLST-THPEGPGPATSAPEPATAASSQAEKSIPSKSLLDWLRQQA 2366
>SGD|S000001934 [details] [associations]
symbol:IRC5 "Putative ATPase containing the DEAD/H
helicase-related sequence motif" species:4932 "Saccharomyces
cerevisiae" [GO:0006312 "mitotic recombination" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000001934 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:D50617 EMBL:BK006940 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006312 GeneTree:ENSGT00550000075106 PIR:S56293
RefSeq:NP_116696.2 ProteinModelPortal:P43610 SMR:P43610
DIP:DIP-5300N MINT:MINT-543614 STRING:P43610 PaxDb:P43610
PRIDE:P43610 EnsemblFungi:YFR038W GeneID:850599 KEGG:sce:YFR038W
CYGD:YFR038w OMA:FEIFNKW OrthoDB:EOG40S3Q6 NextBio:966463
Genevestigator:P43610 GermOnline:YFR038W Uniprot:P43610
Length = 853
Score = 300 (110.7 bits), Expect = 4.0e-45, Sum P(2) = 4.0e-45
Identities = 76/206 (36%), Positives = 117/206 (56%)
Query: 197 AIYDWI--KATG--TLRVDPEDEKRRVQKNPIYQAKVY-----KTLNNRCMELRKTCNHP 247
+I D+I K +G T D + +Q + +Y+ + K L N M+LR+ +
Sbjct: 521 SIRDFINYKLSGNETSNTDNKINPTLLQMDKLYKKNLQMEISNKKLQNMMMQLRQIIDST 580
Query: 248 LLNY-PYF--SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ 304
L Y PY DL+ + L+K+ GKL IL +++ L GH+VL++S +LD++E++
Sbjct: 581 FLFYFPYLHPEDLTLETLLKTSGKLQILQKLIPPLISEGHKVLIYSQFVNMLDLIEDWCD 640
Query: 305 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD 364
RIDG+ + E R+ + FNS IFLLS RAAG G+NL ADTV+++D D
Sbjct: 641 LNSFATFRIDGSVNNETRKDQLEKFNSSKDKHNIFLLSTRAAGLGINLVGADTVVLFDSD 700
Query: 365 PNPKNEEQAVARAHRIGQKREVKVIY 390
NP+ + QA+ R HRIGQ+ V ++Y
Sbjct: 701 WNPQVDLQAMDRCHRIGQESPV-IVY 725
Score = 266 (98.7 bits), Expect = 4.0e-45, Sum P(2) = 4.0e-45
Identities = 62/205 (30%), Positives = 105/205 (51%)
Query: 4 WQSELHKWLPSVSCIYYVGA---KDQRSRL---FSQEVAALKFNVLVTTYEFIMYDRSKL 57
W +E K+ P + + Y G K++ ++L F Q +++T+YE I+ D +
Sbjct: 285 WMNEFAKFAPDLPVLKYYGTNGYKERSAKLKNFFKQHGGT---GIVITSYEIILRDTDLI 341
Query: 58 SKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPE 117
+WK++I+DE R+K+ L ++L + RLLLTGTPLQN+ P+
Sbjct: 342 MSQNWKFLIVDEGHRLKNINCRLIKELKKINTSNRLLLTGTPLQNNLAELWSLLNFIMPD 401
Query: 118 VFDNRKAFHDWFSQPFQKEGPTHNAD--DDWLETEKKVIIIHRLHQILEPFMLRRRVEDV 175
+F + + F+ WF G N++ + + E + +I LH IL+PF+LRR + V
Sbjct: 402 IFADFEIFNKWFDFDSLNLGSGSNSEALNKLINDELQKNLISNLHTILKPFLLRRLKKVV 461
Query: 176 EGS-LPPKVSIVLRCRMSAIQSAIY 199
+ LPPK ++ C M++ Q Y
Sbjct: 462 LANILPPKREYIINCPMTSAQEKFY 486
Score = 39 (18.8 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 460 HEERRMTLETLLHDEERYQETVHDVPSL-QEVNRMIARSEDEVELFDQMDE 509
H E +TLETLL + Q +P L E ++++ S+ V + D +++
Sbjct: 589 HPED-LTLETLLKTSGKLQILQKLIPPLISEGHKVLIYSQF-VNMLDLIED 637
>FB|FBgn0086902 [details] [associations]
symbol:kis "kismet" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0007379 "segment
specification" evidence=IMP] [GO:0007350 "blastoderm segmentation"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0019730 "antimicrobial humoral
response" evidence=IMP] [GO:0007298 "border follicle cell
migration" evidence=IMP] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0016322 "neuron remodeling" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0007614 "short-term memory"
evidence=IMP] [GO:0046622 "positive regulation of organ growth"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0007476 "imaginal disc-derived
wing morphogenesis" evidence=IMP] [GO:0007031 "peroxisome
organization" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0007411 GO:GO:0045892 GO:GO:0005875
EMBL:AE014134 GO:GO:0003677 GO:GO:0006200 GO:GO:0016322
GO:GO:0007031 GO:GO:0016887 GO:GO:0007298 GO:GO:0007614
GO:GO:0004386 GO:GO:0007379 GO:GO:0046622 GO:GO:0007476
GO:GO:0019730 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007350 InterPro:IPR023780
KO:K14437 GeneTree:ENSGT00560000077077 RefSeq:NP_001137761.1
UniGene:Dm.3182 ProteinModelPortal:B7Z002 SMR:B7Z002 STRING:B7Z002
EnsemblMetazoa:FBtr0299837 GeneID:33185 KEGG:dme:Dmel_CG3696
CTD:33185 FlyBase:FBgn0086902 OMA:TTFEMIV OrthoDB:EOG4BZKHC
PhylomeDB:B7Z002 GenomeRNAi:33185 NextBio:782323 Bgee:B7Z002
Uniprot:B7Z002
Length = 5517
Score = 546 (197.3 bits), Expect = 4.4e-45, Sum P(3) = 4.4e-45
Identities = 166/485 (34%), Positives = 240/485 (49%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
WQ E W ++ + Y G+ + + E +KFNVL+TT+E I+
Sbjct: 2092 WQREFEGWT-DMNVVVYHGSVTSKQMIQDYEYYYKTESGKVLKEPIKFNVLITTFEMIVT 2150
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
D L +W+ +IDEA R+K+R L L + + R+LL+GTPLQN+
Sbjct: 2151 DYMDLKAFNWRLCVIDEAHRLKNRNCKLLEGLRQLNLEHRVLLSGTPLQNNISELFSLLN 2210
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F +++ F F L TE++V ++L +L+P MLRR
Sbjct: 2211 FLEPSQFSSQEEFMSEFGS---------------LRTEEEV---NKLQALLKPMMLRRLK 2252
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
+DVE SL PK ++ ++ IQ Y G L ++ K A +
Sbjct: 2253 DDVEKSLAPKEETIIEVELTNIQKKYY-----RGIL-----EQNFSFLKKGTTSANI-PN 2301
Query: 233 LNNRCMELRKTCNHP-LLN-------YPYFSDLSKD------FLVKSCGKLWILDRILIK 278
L N MELRK C HP LLN Y + S +D L+ S GK+ ++D++L K
Sbjct: 2302 LMNTMMELRKCCIHPYLLNGAEEQIQYDFKSQHGEDPESYYKNLILSAGKMVLIDKLLPK 2361
Query: 279 LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFI 338
L+ GHRVL+FS M + LDILE+YL +R+ + RIDG R+ AI ++ SD F+
Sbjct: 2362 LKANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRGNLRQEAIDRYSKPGSDRFV 2421
Query: 339 FLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI-------YM 391
FLL +A G G+NL +ADTVIIYD D NP+N+ QA AR HRIGQ++ VK+ Y
Sbjct: 2422 FLLCTKAGGLGINLTAADTVIIYDSDWNPQNDLQAQARCHRIGQRKMVKIYRLLCRNTYE 2481
Query: 392 EAVVDKISSHQKEDE--LRSGGTVDLEDDLAGKDRYIGS--IEGLIRNNIQQYKIDMADE 447
+ DK S D+ L+S T +D G ++ + IE L++ Y M D+
Sbjct: 2482 REMFDKASMKLGLDKAVLQSMNTQGSKD---GNNKQLSKKEIEDLLKKGA--YGAVMDDD 2536
Query: 448 VINAG 452
NAG
Sbjct: 2537 --NAG 2539
Score = 49 (22.3 bits), Expect = 4.4e-45, Sum P(3) = 4.4e-45
Identities = 29/145 (20%), Positives = 58/145 (40%)
Query: 756 VERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTD-TEMKAHGESNSLRHDQSEPS-- 812
+E ++ + +T GD+ + + D+ A+ D TE + + ++ + +
Sbjct: 3134 IESEKKDNEKETKESTGDAPAVEAKKDSAAIARAEGDKTESCTNNATTNISTTTTTTTIT 3193
Query: 813 -SKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFS 871
+ + N PS K AN+ + T N D + S+ +A ++
Sbjct: 3194 NTTTTTNNPSSKAANSNNT-----TDHANSNSHLGLDEEESVAGSYPPTVAAVEDATTMW 3248
Query: 872 AKMSDVIQRRCKNVISKLQRRIEKE 896
M D + R + VI+ QR +KE
Sbjct: 3249 PSMQD-LNTRLRRVITAYQRNYKKE 3272
Score = 46 (21.3 bits), Expect = 5.6e-45, Sum P(3) = 5.6e-45
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 506 QMDEEFGWIEEMTRYDQVPKWL 527
Q+ W+ E Y+ PKWL
Sbjct: 4592 QLKRLMQWLTENPNYEVDPKWL 4613
Score = 42 (19.8 bits), Expect = 5.6e-45, Sum P(3) = 5.6e-45
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 811 PSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSS 868
PS+ S + + K+ A+ +L +PG + D F + A+G S
Sbjct: 5099 PSTSGSNTGTSTSSSKSSKAAATAAAAQLPQIPGMSSDFPQAFLAEMAAQAMAAAGGS 5156
Score = 40 (19.1 bits), Expect = 4.4e-45, Sum P(3) = 4.4e-45
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 1129 KDMRHTQQTTHQHGWANQPAQPANGGSGAVGWAN 1162
K + QQ ++ + GGSGA G N
Sbjct: 4824 KQQQQQQQAQNEAAQLAAAISASTGGSGASGGKN 4857
Score = 40 (19.1 bits), Expect = 9.0e-45, Sum P(3) = 9.0e-45
Identities = 29/130 (22%), Positives = 49/130 (37%)
Query: 731 EGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLR 790
E DE ++QP +K+ + H + DT + ++L + A
Sbjct: 5395 EEADELIIQPILKKPTAANPGSSHGGSVDD----LDTAENTSAANLSGSSSSSAAAAAAA 5450
Query: 791 TDTEMKAHGESNSLRHDQS--EPSSKSRRNLPS---RKIANAPKSRASLKTGRLNCMPGH 845
E + SN L+ +S E S S P R++ + +R+S LN G
Sbjct: 5451 AAEENRR--SSNRLKRPRSGNEQGSGSVEGQPPEKRRELRSTRHTRSSADASTLNLSTG- 5507
Query: 846 TEDAADHFKE 855
+E A+ E
Sbjct: 5508 SESGAEERNE 5517
Score = 39 (18.8 bits), Expect = 4.8e-44, Sum P(3) = 4.8e-44
Identities = 20/81 (24%), Positives = 34/81 (41%)
Query: 733 EDEQVLQPKIKRKRSIRVRP-RHTV---ERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQ 788
+DE + + +K S V P + + E PE+ D + + ++ K
Sbjct: 3669 DDELMTNESVIKKES-PVTPIKEEIKSEESPEKHDTADNLEDKNSDAEESTKIKGKEDFN 3727
Query: 789 LRTDTEMKAHGESNSLRHDQS 809
T TE +A ES +L D+S
Sbjct: 3728 PET-TEKEALDESTNLNKDKS 3747
Score = 37 (18.1 bits), Expect = 1.8e-44, Sum P(3) = 1.8e-44
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 843 PGHTEDAA-DHFKESWDGKIANASGSSNFSA 872
PG + + D + + AN SGSS+ SA
Sbjct: 5414 PGSSHGGSVDDLDTAENTSAANLSGSSSSSA 5444
Score = 37 (18.1 bits), Expect = 7.8e-44, Sum P(3) = 7.8e-44
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 1004 STSVSTPSP 1012
ST VSTP+P
Sbjct: 2796 STGVSTPAP 2804
>MGI|MGI:1924001 [details] [associations]
symbol:Chd9 "chromodomain helicase DNA binding protein 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
MGI:MGI:1924001 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077 CTD:80205
KO:K14438 OMA:MWGHQTA EMBL:DQ127229 EMBL:AK034446 EMBL:AK039562
EMBL:AK084000 EMBL:AB093226 EMBL:BC052896 IPI:IPI00229650
IPI:IPI00758139 RefSeq:NP_796198.1 UniGene:Mm.100615
ProteinModelPortal:Q8BYH8 SMR:Q8BYH8 STRING:Q8BYH8
PhosphoSite:Q8BYH8 PaxDb:Q8BYH8 PRIDE:Q8BYH8
Ensembl:ENSMUST00000048665 Ensembl:ENSMUST00000109614 GeneID:109151
KEGG:mmu:109151 UCSC:uc009msf.2 UCSC:uc009msi.2 InParanoid:Q8BYH8
OrthoDB:EOG4548XQ ChiTaRS:CHD9 NextBio:361700 Bgee:Q8BYH8
CleanEx:MM_CHD9 Genevestigator:Q8BYH8 Uniprot:Q8BYH8
Length = 2885
Score = 546 (197.3 bits), Expect = 6.1e-45, Sum P(4) = 6.1e-45
Identities = 158/465 (33%), Positives = 233/465 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
W+ E W ++ + Y G+ R + E+ A +F ++TT+E I+
Sbjct: 922 WEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYRFQAIITTFEMILG 980
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
+L+ +DW+ +IIDEA R+K++ L L + ++LLTGTPLQN
Sbjct: 981 GCGELNAIDWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLH 1040
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + F F L+TE++V +L IL+P MLRR
Sbjct: 1041 FLEPLRFPSESTFMQEFGD---------------LKTEEQV---QKLQAILKPMMLRRLK 1082
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
EDVE L PK ++ ++ IQ Y R E + K Q V
Sbjct: 1083 EDVEKKLAPKEETIIEVELTNIQKKYY---------RAILEKNFSFLSKGA-GQTNV-PN 1131
Query: 233 LNNRCMELRKTCNHPLL--------------NY-PYFSDLSKDFLVKSCGKLWILDRILI 277
L N MELRK CNHP L Y P SD +++S GKL ++D++L
Sbjct: 1132 LVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPSASDFHLQAMIQSAGKLVLIDKLLP 1191
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
K++ GH+VL+FS M + LDILE+YL ++ +Y RIDG R++AI F+ DSD F
Sbjct: 1192 KMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 1251
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y +V +
Sbjct: 1252 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKV-YR--LVTR 1308
Query: 398 ISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 438
+S+++E D L+ G + ++G+D + I+ L + I+
Sbjct: 1309 -NSYEREMFDRASLKLGLDKAVLQSMSGRDSNVSGIQQLSKKEIE 1352
Score = 44 (20.5 bits), Expect = 6.1e-45, Sum P(4) = 6.1e-45
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 791 TDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKT 836
+ + + S+S SE + R P RK A +S ASL T
Sbjct: 2180 SSSSSSSSSSSSSSEESDSEEDVQKREGTPHRK-AYDEESVASLST 2224
Score = 44 (20.5 bits), Expect = 6.1e-45, Sum P(4) = 6.1e-45
Identities = 20/99 (20%), Positives = 40/99 (40%)
Query: 806 HDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANAS 865
H+QS SK ++++ ++ K LK + + A K +DG+ A
Sbjct: 2326 HEQSAQMSKVKKHVREKEFTVKIKDEGGLK------LTFQKQGLAQ--KRPFDGE-DGAL 2376
Query: 866 GSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLL 904
G + ++ + +Q + + L + + G I P L
Sbjct: 2377 GQQQYLTRLRE-LQSTSETSLVNLPKAVPASGTSIQPTL 2414
Score = 41 (19.5 bits), Expect = 6.1e-45, Sum P(4) = 6.1e-45
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 1149 QPANGGSGAVGWANPVKRLRTDAGKRR 1175
QP G +GA+ + P+ + R G+RR
Sbjct: 2411 QPTLGANGAILDSQPIVKKRR--GRRR 2435
Score = 41 (19.5 bits), Expect = 6.1e-45, Sum P(4) = 6.1e-45
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 556 GVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 594
G +S I+T R R K+ + DE+ E SEA S+
Sbjct: 1438 GRNSLVIDTPRIR----KQTRPFSATKDELAELSEAESE 1472
Score = 41 (19.5 bits), Expect = 6.1e-45, Sum P(4) = 6.1e-45
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 1129 KDMRHTQQTTHQHGWANQPAQPANGGSGAVGWANPVKRLR 1168
KD + T + G A + +P +G GA+G + RLR
Sbjct: 2349 KDEGGLKLTFQKQGLAQK--RPFDGEDGALGQQQYLTRLR 2386
Score = 41 (19.5 bits), Expect = 1.2e-44, Sum P(4) = 1.2e-44
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 965 EVRSEARKVHDLFFDLLKIAFPDTD 989
+VR +A + H F+ LK+ P+ D
Sbjct: 1932 KVREQALR-HPQLFERLKLCHPNPD 1955
>UNIPROTKB|F1RT88 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:CU179734
Ensembl:ENSSSCT00000006828 Uniprot:F1RT88
Length = 2991
Score = 530 (191.6 bits), Expect = 1.0e-44, Sum P(3) = 1.0e-44
Identities = 159/467 (34%), Positives = 237/467 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
W+ E W ++ + Y G++ R + E+ + KF+ ++TT+E I+
Sbjct: 1024 WEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIITTFEMILT 1082
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
D +L + W+ ++IDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 1083 DCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLH 1142
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + F F L+TE++V +L IL+P MLRR
Sbjct: 1143 FLEPSRFPSETTFMQEFGD---------------LKTEEQV---QKLQAILKPMMLRRLK 1184
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
EDVE +L PK ++ ++ IQ Y R E + K QA V
Sbjct: 1185 EDVEKNLAPKEETIIEVELTNIQKKYY---------RAILEKNFTFLSKGG-GQANVPNL 1234
Query: 233 LNNRCMELRKTCNHP-LLN------YPYFSDL----SKDF----LVKSCGKLWILDRILI 277
LN MELRK CNHP L+N F + S DF ++++ GKL ++D++L
Sbjct: 1235 LNTM-MELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLIDKLLP 1293
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
KL+ GHRVL+FS M + LDILE+YL R+ Y RIDG R++AI F+ DSD F
Sbjct: 1294 KLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRF 1353
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPK--NEEQAVARAHRIGQKREVKVIYMEAVV 395
+FLL RA G G+NL +ADT II+D D NPK + QA AR HRIGQ + VK IY ++
Sbjct: 1354 VFLLCTRAGGLGINLTAADTCIIFDSDWNPKMISSFQAQARCHRIGQSKSVK-IYR--LI 1410
Query: 396 DKISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 438
+ +S+++E D+ L+ G + ++G++ ++ L + I+
Sbjct: 1411 TR-NSYEREMFDKASLKLGLDKAVLQSMSGRENAPNGVQQLSKKEIE 1456
Score = 51 (23.0 bits), Expect = 4.0e-44, Sum P(4) = 4.0e-44
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 539 ANLSKKPSKNILFGSNIGVDSGEIETERKRG 569
A LS+ PS+++L GS VDS E +R+RG
Sbjct: 2481 AGLSRTPSRHLLNGSL--VDS-EPPVKRRRG 2508
Score = 47 (21.6 bits), Expect = 1.0e-44, Sum P(3) = 1.0e-44
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 555 IGVDSGEIETE--RKRGPKGKKYPNYKEVDDEI--GEYSEASSDERNG 598
+G+D +++ R+ P G + + KE++D + G Y +E G
Sbjct: 1427 LGLDKAVLQSMSGRENAPNGVQQLSKKEIEDLLRKGAYGALMDEEDEG 1474
Score = 46 (21.3 bits), Expect = 1.0e-44, Sum P(3) = 1.0e-44
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 683 FGSLSALEARPGSLSKRMPDELEEGEIAVSGDSH-MDHQQSGSWTHDRDEGEDE 735
F +L+ L+ GS ++ PD+ E G ++ D ++S T + EDE
Sbjct: 2915 FPALAGLQNAVGSGEEKAPDKAEGGAFQEEENAEGSDAEESLDKTAESSVLEDE 2968
Score = 42 (19.8 bits), Expect = 2.7e-44, Sum P(3) = 2.7e-44
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 807 DQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPG-HTED 848
D+SE SS+ SR +S AS+ T R G + ED
Sbjct: 2243 DKSEESSQPEAGAVSRGKNFDEESNASMSTARDETRDGFYMED 2285
Score = 42 (19.8 bits), Expect = 3.4e-44, Sum P(3) = 3.4e-44
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 562 IETERKRGPKGKKYPNYKEVDDEIGEYSEASSD 594
I+T R R + + Y KE DE+ E+S+ SD
Sbjct: 1555 IDTPRVR-KQTRLYSAVKE--DELMEFSDLESD 1584
Score = 39 (18.8 bits), Expect = 4.0e-44, Sum P(4) = 4.0e-44
Identities = 21/87 (24%), Positives = 35/87 (40%)
Query: 397 KISSHQKEDELRSGGTVDLEDDLAGK---------DRYIGSIEG---LIRNNIQQYKIDM 444
++ S KEDEL DLE D K DR G + N+ Y
Sbjct: 1565 RLYSAVKEDELMEFS--DLESDSEEKPCAKPRRPQDRSQGYARSECFRVEKNLLVYGWGR 1622
Query: 445 ADEVINAGRFDQRTTHEERRMTLETLL 471
++++ GR+ ++ T ++ T+L
Sbjct: 1623 WTDILSHGRYKRQLTEQDVETICRTIL 1649
Score = 39 (18.8 bits), Expect = 5.6e-44, Sum P(3) = 5.6e-44
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 710 AVSGDSHMDHQQSGSWTHDRDEGED 734
AVS + D + + S + RDE D
Sbjct: 2255 AVSRGKNFDEESNASMSTARDETRD 2279
>ZFIN|ZDB-GENE-030131-497 [details] [associations]
symbol:chd9 "chromodomain helicase DNA binding
protein 9" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-030131-497
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
EMBL:CR318585 EMBL:CU464124 EMBL:FP015866 IPI:IPI00972236
Ensembl:ENSDART00000027807 Bgee:E7F7W5 Uniprot:E7F7W5
Length = 2948
Score = 532 (192.3 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 158/470 (33%), Positives = 238/470 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
W+ E W ++ I Y G+ R L E+ A +F ++TT+E I+
Sbjct: 976 WEREFRTWT-HLNVIVYHGSVVSRQMLQQYEMYCRDSQGRVIRGAYRFQAVITTFEMILG 1034
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
+L+ +DW+ +IIDEA R+K++ L + ++LLTGTPLQN
Sbjct: 1035 GCPELNAIDWRCVIIDEAHRLKNKNCKLLEGFKLMSLEHKVLLTGTPLQNTVEELFSLLH 1094
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F + F F L+TE++V +L IL+P MLRR
Sbjct: 1095 FLEPTRFPSENTFMQEFGD---------------LKTEEQV---QKLQAILKPMMLRRLK 1136
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
EDVE L PK ++ ++ IQ Y R E + K QA V
Sbjct: 1137 EDVEKKLAPKEETIIEVELTNIQKKYY---------RAILEKNFSFLAKGA-GQANVPNL 1186
Query: 233 LNNRCMELRKTCNHPLL----------NYP-YFSDLSKDF----LVKSCGKLWILDRILI 277
LN MELRK CNHP L ++ +S + DF +++S GKL ++D++L
Sbjct: 1187 LNTM-MELRKCCNHPYLIKGAEEKIMEDFKEVYSPAAVDFHLQAMIQSAGKLVLIDKLLP 1245
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
K++ GH+VL+FS M + LDILE+YL R+ +Y RIDG R++AI F+ DSD F
Sbjct: 1246 KMKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 1305
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397
+FLL RA G G+NL +ADT II+D D NP+N+ QA AR HRIGQ + VKV Y ++ +
Sbjct: 1306 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKV-YR--LITR 1362
Query: 398 ISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKID 443
+S+++E D L+ G + ++G+D + G ++ + + +I+
Sbjct: 1363 -NSYEREMFDRASLKLGLDKAVLQSMSGRDNSLAG-GGQMQQQLSKKEIE 1410
Score = 39 (18.8 bits), Expect = 2.2e-43, Sum P(3) = 2.2e-43
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 991 REARSALSFTGPLSTSVSTPSPRQTTVGQS 1020
RE+RS G S+S S+ S R ++ S
Sbjct: 2200 RESRSDSDSDGSSSSSSSSSSSRSSSSSSS 2229
Score = 39 (18.8 bits), Expect = 2.2e-43, Sum P(3) = 2.2e-43
Identities = 18/77 (23%), Positives = 27/77 (35%)
Query: 857 WDGKIANASGSSNFSAKMS-DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIET 913
W G +A SG S S + + L+ G P +L W + E
Sbjct: 2510 WSGGVAGMSGPSGLSTPQGPSTFDTESRVPVISLKDGTRLAGED-APKRKELDQWLK-EH 2567
Query: 914 SGYVSGAGNNILDLRKI 930
G+V+ G I K+
Sbjct: 2568 PGFVADVGAFIPTANKL 2584
Score = 39 (18.8 bits), Expect = 2.2e-43, Sum P(3) = 2.2e-43
Identities = 31/121 (25%), Positives = 45/121 (37%)
Query: 690 EARPGSLSKRMPDELEEGEIAVSGDS----HMDHQQSGSWTHDRDEGEDEQVLQPKIKRK 745
+ RP S +K EL EGE SGD H + S+ ++ +L R
Sbjct: 1510 QTRPFSSTKDELAELSEGES--SGDDKPKLRRPHDRLNSYGRTECFRVEKNLLVYGWGRW 1567
Query: 746 RSIRVR---PRHTVERPEERSC----TDTPLH-RGDSSLLPFQMDNKYPAQLRTDTEMKA 797
+ I R ER E C + +H RGD + F D P + E++
Sbjct: 1568 KDILAHGRFKRQLSERDVEWICRALLSYCLVHYRGDDKIKSFMWDLIAPTEDGRTKELQN 1627
Query: 798 H 798
H
Sbjct: 1628 H 1628
Score = 38 (18.4 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 471 LHDEERYQETVHDVPSLQEVNRMIARSEDEVE 502
L DEE +++ D+P +N + + E
Sbjct: 2792 LGDEEEKKKSAGDIPKSSALNLSLDGKAERTE 2823
Score = 38 (18.4 bits), Expect = 2.7e-43, Sum P(3) = 2.7e-43
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 1078 DDSPHPGELVI 1088
DD+ PG+LVI
Sbjct: 1807 DDASSPGDLVI 1817
>POMBASE|SPCC1235.05c [details] [associations]
symbol:fft2 "fun thirty related protein Fft2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM;ISS] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0051276 "chromosome organization" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCC1235.05c GO:GO:0005829
GO:GO:0005524 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 OrthoDB:EOG4BCHW4 PIR:T40879 RefSeq:NP_587731.1
ProteinModelPortal:O74842 STRING:O74842 EnsemblFungi:SPCC1235.05c.1
GeneID:2539045 KEGG:spo:SPCC1235.05c KO:K14439 NextBio:20800219
Uniprot:O74842
Length = 1284
Score = 306 (112.8 bits), Expect = 3.9e-44, Sum P(2) = 3.9e-44
Identities = 120/375 (32%), Positives = 180/375 (48%)
Query: 213 EDEKRRVQKNPIYQAKVYKTLNNRC----MELRKTCN-HPLL-NYPYFSDLS-KDFLVKS 265
+DEK + I Q + YK N + ME+ H L ++P + KD
Sbjct: 863 DDEKLKQMAKDIMQEEQYKNANEQYIYEDMEVMSDFELHRLCRSFPTLQSYTLKDDPWMD 922
Query: 266 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 325
GK+ +L +L K++ G R+LLFS T++LDILE+ L ++ Y R+DG+T +E R+
Sbjct: 923 SGKIRVLKELLPKMKEEGSRILLFSQFTQMLDILEQVLDTLKISYVRLDGSTQVEVRQDI 982
Query: 326 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 385
I F+ + D +FLLS +A G G+NL A+ VI+YD NP ++ QA RAHR+GQ RE
Sbjct: 983 IDQFHKEE-DVTVFLLSTKAGGFGINLACANVVILYDCSYNPFDDLQAEDRAHRVGQVRE 1041
Query: 386 VKVIYMEAVVDK-ISSH-QKEDELRSGGTVDLEDDLAGKDRY-IGSIEGLIRNNIQQYKI 442
V VI + + D I + QK + + L D GKDR IG E L++
Sbjct: 1042 VTVIRL--ITDNTIEEYIQKLANTKLALDMSLSSD--GKDREEIG--ERLVQ-------- 1087
Query: 443 DMADEVINAGRFDQRTTHEERRMTLETLLHDEERY---QETVHDVPSLQEVNRMIARSED 499
DM DE N T E + + + +ET VP E ++ S +
Sbjct: 1088 DMLDEENNGNNTKPEITGNESDGEFKVSSSNNSKQTDAEETNTGVPL--EGSQ--PNSVE 1143
Query: 500 EVELFDQMDEEFGWIEEMTRYDQVP---KWLRASTKEVNA-TIANLSKKPSKNILFGSNI 555
+ +L D DE+ EM + + V K LR + K N T +N + SK+ N
Sbjct: 1144 KTDLADG-DEKANIKTEM-KSETVEGDNKELRETMKGENVQTDSNAAVPSSKSSTEEPNE 1201
Query: 556 GVDSGEIETERKRGP 570
V SG ++ + + P
Sbjct: 1202 SVLSGHLDLDTEASP 1216
Score = 256 (95.2 bits), Expect = 3.9e-44, Sum P(2) = 3.9e-44
Identities = 80/258 (31%), Positives = 120/258 (46%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQ-EVAALKFNVLVTTYEFIMY---DRSKLSK 59
W EL ++ PS+ Y G++ +R+ + E +K+++LVTTY+ DRS L
Sbjct: 613 WLRELARFCPSLRVEPYYGSQQERANIREAIEENEIKYDILVTTYQLATNNKEDRSFLKH 672
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
++ + DE +K+R S + L RLLLTGTPLQN+ P +F
Sbjct: 673 QNFDVCVYDEGHYLKNRMSERYKHLMNLNANFRLLLTGTPLQNNLKELVSLLAFILPNMF 732
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
D+ D F K PT +AD + K+ I R ++ PF+LRRR V L
Sbjct: 733 DSDM---DDLDVIF-KAKPTADADIEQALLSKQRI--SRAKTMMTPFVLRRRKNQVLNDL 786
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQ-KNPIYQAKVYKTLNNRCM 238
P K I+ C++S Q IY+ A + D+KR + KN + + M
Sbjct: 787 PKKTQIIEHCKLSENQLEIYNRYAALQKNQQLRRDDKRNKRSKNDEESDGKSLSAGHVLM 846
Query: 239 ELRKTCNHPLLNYPYFSD 256
+LRK NH LL ++ D
Sbjct: 847 QLRKAANHALLFRKFYDD 864
Score = 42 (19.8 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 29/136 (21%), Positives = 50/136 (36%)
Query: 695 SLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTH-----DRDEGEDEQVLQPKIKRKRSIR 749
SLS D E GE V +D + +G+ T + +GE + K+ +
Sbjct: 1070 SLSSDGKDREEIGERLVQ--DMLDEENNGNNTKPEITGNESDGEFKVSSSNNSKQTDAEE 1127
Query: 750 VRPRHTVERPEERSCTDTPLHRGDSSL-LPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQ 808
+E + S T L GD + +M ++ + GE+ +
Sbjct: 1128 TNTGVPLEGSQPNSVEKTDLADGDEKANIKTEMKSETVEGDNKELRETMKGENVQTDSNA 1187
Query: 809 SEPSSKSRRNLPSRKI 824
+ PSSKS P+ +
Sbjct: 1188 AVPSSKSSTEEPNESV 1203
>UNIPROTKB|E1BS48 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:AADN02038292
EMBL:AADN02038293 EMBL:AADN02038294 EMBL:AADN02038295
EMBL:AADN02038296 EMBL:AADN02038297 EMBL:AADN02038298
IPI:IPI00579055 Ensembl:ENSGALT00000005902 Uniprot:E1BS48
Length = 2614
Score = 529 (191.3 bits), Expect = 4.2e-44, Sum P(3) = 4.2e-44
Identities = 155/466 (33%), Positives = 233/466 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-----------AALKFNVLVTTYEFIMY 52
W+ E W ++ + Y G+ R + E+ +F ++TT+E I+
Sbjct: 920 WEREFRTWT-DLNVVVYHGSMISRQMIQQYEMYFRDSQGRIVRGTYRFQAIITTFEMILG 978
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXX 112
+L+ ++W+ +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 979 GCPELNAIEWRCVIIDEAHRLKNRNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLH 1038
Query: 113 XXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 172
P F F F L+TE++V +L IL+P MLRR
Sbjct: 1039 FLEPLRFPAESTFMQEFGD---------------LKTEEQV---QKLQAILKPMMLRRLK 1080
Query: 173 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 232
EDVE L PK ++ ++ IQ Y R E + K QA V
Sbjct: 1081 EDVEKKLAPKEETIIEVELTNIQKKYY---------RAILEKNFAFLSKGA-GQANV-PN 1129
Query: 233 LNNRCMELRKTCNHPLL--------------NY-PYFSDLSKDFLVKSCGKLWILDRILI 277
L N MELRK CNHP L Y P D +++S GKL ++D++L
Sbjct: 1130 LVNTMMELRKCCNHPYLIKGAEEKILGEFKETYNPTAPDFHLQAMIQSAGKLVLIDKLLP 1189
Query: 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337
K++ GH+VL+FS M + LDILE+YL ++ +Y RIDG R++AI F+ DSD F
Sbjct: 1190 KMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 1249
Query: 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNE-EQAVARAHRIGQKREVKVIYMEAVVD 396
+FLL RA G G+NL +ADT II+D D NP+N+ ++A AR HRIGQ + VKV Y ++
Sbjct: 1250 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQKAQARCHRIGQNKAVKV-YR--LIT 1306
Query: 397 KISSHQKE--DE--LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQ 438
+ +S+++E D L+ G + ++G++ +G I+ L + I+
Sbjct: 1307 R-NSYEREMFDRASLKLGLDKAVLQSMSGRENSVGGIQQLSKKEIE 1351
Score = 48 (22.0 bits), Expect = 4.2e-44, Sum P(3) = 4.2e-44
Identities = 41/200 (20%), Positives = 80/200 (40%)
Query: 688 ALEARPGSLSKRMPD-ELEEGE-IAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPK-IKR 744
AL A P + R+PD ++ E V ++ + QS S E + V++ + +
Sbjct: 2020 ALSASPLTPQSRLPDAKVNTPEDTKVKSENRKEDAQS-SEEESMSTEETQTVMKSEPLSP 2078
Query: 745 KRSIRVRPRHTVERPEERSCTDTPLHRGDSS-LLPFQMDNKYPAQLRTDTEMKAHGESNS 803
K V+ +T +P + D + + L P K R ++ + +S+S
Sbjct: 2079 KNGAPVQ--NTEHKPSVKIEADRRMVAARTEPLTPNPASKKQRVSKR-GSDSSSDSDSDS 2135
Query: 804 LRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIAN 863
D+S SS+S S +++ S + ++G + A+ S ++
Sbjct: 2136 ---DRSSCSSRS-----SSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSSS 2187
Query: 864 ASGSSNFSAKMSDVIQRRCK 883
+S SS S + Q+R +
Sbjct: 2188 SSSSSEESDSDEEEAQKRAE 2207
Score = 38 (18.4 bits), Expect = 4.2e-44, Sum P(3) = 4.2e-44
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 481 VHDVPSLQEVNRMIARSEDEVELFDQMDEE 510
V D P +++ R + ++DE+ +++ E
Sbjct: 1442 VIDTPRIRKQTRPFSATKDELAELSEVESE 1471
>UNIPROTKB|F1NAD2 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0000729 "DNA double-strand
break processing" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0051304 "chromosome
separation" evidence=IEA] [GO:0070932 "histone H3 deacetylation"
evidence=IEA] [GO:0070933 "histone H4 deacetylation" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000018 GeneTree:ENSGT00630000089890
GO:GO:0051304 OMA:KNQRGIQ EMBL:AADN02016061 EMBL:AADN02016062
EMBL:AADN02016063 EMBL:AADN02016064 EMBL:AADN02016065
EMBL:AADN02016066 EMBL:AADN02016067 IPI:IPI00583150
Ensembl:ENSGALT00000016936 Uniprot:F1NAD2
Length = 963
Score = 315 (115.9 bits), Expect = 4.8e-44, Sum P(2) = 4.8e-44
Identities = 78/190 (41%), Positives = 112/190 (58%)
Query: 251 YPYFSDLSKDF-LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 309
Y + SD D + GK +L+R+L L+ G RV+LFS T +LDILE +L+ Q
Sbjct: 774 YSHVSDFKLDMDQILDSGKFRVLERLLSDLKEKGDRVVLFSQFTMVLDILEVFLKHWQHR 833
Query: 310 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 369
Y R+DG T + DR I +FN+ D D F+FLLS +A G G+NL SA+ VI++D D NP N
Sbjct: 834 YIRLDGKTQISDRIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 892
Query: 370 EEQAVARAHRIGQKREVKVIYM--EAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIG 427
++QA R HR+GQ REVKVI + + +++ + +L+ LE D+ D +G
Sbjct: 893 DKQAEDRCHRVGQTREVKVIKLISKGTIEESMLKMNQQKLK------LEQDMTAAD--LG 944
Query: 428 SIEGLIRNNI 437
EG I +I
Sbjct: 945 E-EGAIPADI 953
Score = 242 (90.2 bits), Expect = 4.8e-44, Sum P(2) = 4.8e-44
Identities = 67/201 (33%), Positives = 100/201 (49%)
Query: 4 WQSELHKWLPSVSCI-YYVGAKDQRSRLFSQ-EVAALKFNVLVTTYEFIMY---DRSKLS 58
W E++ W P ++ + YYVG+++ R L + + FNV+VTTY + DRS
Sbjct: 496 WIREVNLWCPELNVLFYYVGSQEDRKHLRADISNRVVDFNVIVTTYNCAISSSDDRSLFR 555
Query: 59 KVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 118
KV Y I DE +K+ SV + L R + RLLLTGTP+QN+ P +
Sbjct: 556 KVKLNYAIFDEGHMLKNMSSVRYQQLMRINAKHRLLLTGTPVQNNLLELMSLLNFVMPHM 615
Query: 119 FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 178
F + + + F + T A++ T +K I H QI++PF+LRR ++V
Sbjct: 616 FSSSTSE---IRRMFSSKAKT--AEEQ--STYEKERIAHA-KQIIKPFILRRVKDEVLKQ 667
Query: 179 LPPKVSIVLRCRMSAIQSAIY 199
LPPK + C MS Q +Y
Sbjct: 668 LPPKKDHIELCAMSEKQEQLY 688
Score = 41 (19.5 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 894 EKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKI 930
EK+ LL L K ++ + S GN ++ LRK+
Sbjct: 682 EKQEQLYCDLLNKLKKTMKGNEKNSDMGNAMMQLRKM 718
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 292 (107.8 bits), Expect = 4.2e-42, Sum P(3) = 4.2e-42
Identities = 66/197 (33%), Positives = 99/197 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W+ E KW P++ + Y G +R+ + F+V +T+Y+ + D + W+
Sbjct: 622 WEMEFKKWCPALKILTYFGTAKERAEKRKGWMKPNCFHVCITSYKTVTQDIRAFKQRAWQ 681
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y+I+DEAQ +K+ +S + L R +RRLLLTGTPLQN P +F +
Sbjct: 682 YLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPLQNSLMELWSLMHFLMPTIFSSHD 741
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F DWFS P G E +I RLH++L PF+LRR ++VE LP K
Sbjct: 742 DFKDWFSNPLT--GMMEG------NMEFNAPLIGRLHKVLRPFILRRLKKEVEKQLPEKT 793
Query: 184 SIVLRCRMSAIQSAIYD 200
++ C +S Q +YD
Sbjct: 794 EHIVNCSLSKRQRYLYD 810
Score = 269 (99.8 bits), Expect = 4.2e-42, Sum P(3) = 4.2e-42
Identities = 64/158 (40%), Positives = 91/158 (57%)
Query: 266 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 325
CGKL L +L +L HR L+F+ M+K+LD+L+ +L Y R+DGTT +E R++
Sbjct: 1187 CGKLQTLAVLLRQLYLYKHRCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGVEQRQAM 1246
Query: 326 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 385
+ FN+ D F F+LS R+ G G+NL ADTVI YD D NP + QA R HRIGQ R
Sbjct: 1247 MERFNA-DPKVFCFILSTRSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRN 1305
Query: 386 VKV--IYMEAVVDKISSHQKEDELRSGGTVDLEDDLAG 421
V + + E +++ + + R G +L D AG
Sbjct: 1306 VSIYRLISERTIEENILRKATQKRRLG---ELAIDEAG 1340
Score = 132 (51.5 bits), Expect = 2.0e-25, Sum P(3) = 2.0e-25
Identities = 35/98 (35%), Positives = 49/98 (50%)
Query: 155 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 214
+I RLH++L PF+LRR ++VE LP K ++ C +S Q +YD +
Sbjct: 765 LIGRLHKVLRPFILRRLKKEVEKQLPEKTEHIVNCSLSKRQRYLYD------------DF 812
Query: 215 EKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 252
RR K + + LN M+LRK CNHP L P
Sbjct: 813 MSRRSTKENLKSGNMMSVLNI-VMQLRKCCNHPNLFEP 849
Score = 61 (26.5 bits), Expect = 3.0e-20, Sum P(3) = 3.0e-20
Identities = 22/85 (25%), Positives = 43/85 (50%)
Query: 876 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWK-RIETSGYVSGAGNNILDLRKIDQRV 934
+V+Q R ++ + +++ G + P+LTD W+ R +SG S NN+ ++ +++ R
Sbjct: 1101 EVVQER---LLEYCELLVQRFGMYVEPVLTDAWQCRPSSSGLPSYIRNNLSNI-ELNSR- 1155
Query: 935 DRLEYNGVMELVSDVQFMLKGAMQF 959
L N D + + A+QF
Sbjct: 1156 -SLLLNTSTNF--DTRMSISRALQF 1177
Score = 60 (26.2 bits), Expect = 1.9e-20, Sum P(3) = 1.9e-20
Identities = 32/146 (21%), Positives = 59/146 (40%)
Query: 368 KNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKD--RY 425
K E A+A+ K+ EA VD +K S D E D + +
Sbjct: 1376 KEMEVAMAKCEDEADVNAAKIAVAEANVDNAEFDEKSLPPMSNLQGDEEADEKYMELIQQ 1435
Query: 426 IGSIEGLIRNNIQ-QYKIDMADEVINA-GRFDQRTTHEERRMTLETLLHDEERYQETVHD 483
+ IE N ++ QYK + +E A DQ+ ++ + +T + D + + +
Sbjct: 1436 LKPIERYAINFLETQYKPEFEEECKEAEALIDQKREEWDKNLN-DTAVIDLDDSDSLLLN 1494
Query: 484 VPSLQEVNRMIARSEDEVELFDQMDE 509
PS + DE++ +D++D+
Sbjct: 1495 DPSTSADFYQSSSLLDEIKFYDELDD 1520
Score = 43 (20.2 bits), Expect = 4.2e-42, Sum P(3) = 4.2e-42
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 692 RPGSLSKRMP-DELEEGEIAVS-GDSHMDHQQSGSWTHDRDEGEDEQVLQPK--IKRKRS 747
RP L + + D + + + V + + H + G T + D +L K + R +S
Sbjct: 1775 RPKELGQLVASDPISKKTMKVDLSHTELSHLRKGRMTTESQYAHDYGILTDKKHVNRFKS 1834
Query: 748 IRV 750
+RV
Sbjct: 1835 VRV 1837
Score = 40 (19.1 bits), Expect = 3.0e-20, Sum P(3) = 3.0e-20
Identities = 28/132 (21%), Positives = 46/132 (34%)
Query: 639 GGYDYLRPSENTRNNHVVEEAXXXXXXXXXRRLTQIVSPVSPQKFGSLSALEA--RPGSL 696
GG+ + R + +N H EE+ I P + G+ A RP +
Sbjct: 925 GGFRFNRTAFVAKNPHT-EESEDEGVMRSRVLPKPINGTAQPLQNGNSIPQNAPNRPQTS 983
Query: 697 SKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVR----- 751
R + + +S D H + +D + P +KR++
Sbjct: 984 CIRSKTVVNTVPLTISTDRSGFHFNMANVGRGVVRLDDSARMSPPLKRQKLTGTATNWSD 1043
Query: 752 --PRHTVERPEE 761
PRH VE+ EE
Sbjct: 1044 YVPRHVVEKMEE 1055
Score = 37 (18.1 bits), Expect = 4.3e-18, Sum P(3) = 4.3e-18
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 204 ATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
AT T V + ++++ QK+ + +T NR E
Sbjct: 1653 ATTTTTVPQQQQQQQQQKSSKKKRNDNRTAQNRTAE 1688
Score = 37 (18.1 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRC 189
+ + ++P ++ +ED EGS + S++ C
Sbjct: 164 IQKTMQPIEVK--IEDSEGSNTAQPSVLPSC 192
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 471 (170.9 bits), Expect = 1.1e-41, Sum P(2) = 1.1e-41
Identities = 126/401 (31%), Positives = 205/401 (51%)
Query: 1 MSMWQSELHKWLPS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLS 58
M W E H W P V+ ++ G+ Q+ +++A +L+T+Y +I + +S
Sbjct: 574 MHQWVKEFHTWWPPFRVAILHETGSYTQKKEKLIRDIAHCH-GILITSYSYIRLMQDDIS 632
Query: 59 KVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 118
+ DW Y+I+DE ++++ + + ++R R++L+G+P+QN+ P
Sbjct: 633 RHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGK 692
Query: 119 FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 178
F + FS P G + NA ++T K + L + P++LRR DV+ S
Sbjct: 693 LGTLPVFMEQFSVPITMGGYS-NASPVQVKTAYKCACV--LRDTINPYLLRRMKSDVKMS 749
Query: 179 L--PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNR 236
L P K VL CR++ Q +Y +D + E R+ + +++ L
Sbjct: 750 LSLPDKNEQVLFCRLTEEQHKVYQNF-------IDSK-EVYRILNGDM---QIFSGL--- 795
Query: 237 CMELRKTCNHPLL------NYPYFSDLSKD--F-LVKSCGKLWILDRILIKLQRTGHRVL 287
+ LRK CNHP L N D ++ F K GK+ +++ +L + G RVL
Sbjct: 796 -VALRKICNHPDLFSGGPKNLKTIPDDDEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVL 854
Query: 288 LFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 347
LFS ++LDILE +L+ ++ Y ++DGTT++ R+ I +N D+ F+FLL+ R G
Sbjct: 855 LFSQSRQMLDILEVFLRAQKYSYLKMDGTTAIASRQPLITRYNE-DTSIFVFLLTTRVGG 913
Query: 348 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
G+NL A+ VIIYDPD NP + QA RA RIGQK++V V
Sbjct: 914 IGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTV 954
Score = 64 (27.6 bits), Expect = 1.1e-41, Sum P(2) = 1.1e-41
Identities = 20/72 (27%), Positives = 33/72 (45%)
Query: 833 SLKTGRLNCMPG-HTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQR 891
S + + C G +D D+ E + GK+ +A S S + + R +N + L +
Sbjct: 1338 SSASSKEKCQDGVPRKDGKDNASEHFSGKVEDAESSPGALPSSSLLAKMRARNHLI-LPQ 1396
Query: 892 RIEKEG-HQIVP 902
R+E E HQ P
Sbjct: 1397 RLESENAHQEAP 1408
Score = 49 (22.3 bits), Expect = 4.3e-40, Sum P(2) = 4.3e-40
Identities = 21/86 (24%), Positives = 35/86 (40%)
Query: 379 RIGQKREVKVIYMEAVVDKISSHQK-EDEL-RSGGTVDLEDDLAGKDRYIGSIEGLIRNN 436
R GQKR K SS +K +D + R G + + +GK S G + ++
Sbjct: 1323 RFGQKRNSKFSVQHP--SSASSKEKCQDGVPRKDGKDNASEHFSGKVEDAESSPGALPSS 1380
Query: 437 IQQYKIDMADEVINAGRFDQRTTHEE 462
K+ + +I R + H+E
Sbjct: 1381 SLLAKMRARNHLILPQRLESENAHQE 1406
>UNIPROTKB|Q03468 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0007256 "activation of JNKK activity" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEA] [GO:0010332 "response
to gamma radiation" evidence=IEA] [GO:0045494 "photoreceptor cell
maintenance" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0008023 "transcription
elongation factor complex" evidence=IDA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0009411 "response to UV"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006979
"response to oxidative stress" evidence=IDA] [GO:0006284
"base-excision repair" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0005730 GO:GO:0032403 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 Orphanet:279 GO:GO:0045494
GO:GO:0010332 GO:GO:0006366 GO:GO:0004386 GO:GO:0010165
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 EMBL:CH471187 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 Orphanet:1466 EMBL:L04791 EMBL:AY204752 EMBL:AL138760
IPI:IPI00414779 PIR:A44224 RefSeq:NP_000115.1 UniGene:Hs.654449
ProteinModelPortal:Q03468 SMR:Q03468 DIP:DIP-193N IntAct:Q03468
MINT:MINT-1193928 STRING:Q03468 PhosphoSite:Q03468 DMDM:416959
PaxDb:Q03468 PRIDE:Q03468 Ensembl:ENST00000355832 GeneID:2074
KEGG:hsa:2074 UCSC:uc001jhr.4 CTD:2074 GeneCards:GC10M050663
HGNC:HGNC:3438 MIM:133540 MIM:214150 MIM:278800 MIM:600630
MIM:609413 MIM:613761 neXtProt:NX_Q03468 Orphanet:90321
Orphanet:90322 Orphanet:90324 Orphanet:1569 Orphanet:178338
PharmGKB:PA27852 HOGENOM:HOG000170952 HOVERGEN:HBG051502
InParanoid:Q03468 KO:K10841 OMA:NGEMQIF OrthoDB:EOG476JZF
PhylomeDB:Q03468 ChiTaRS:ERCC6 GenomeRNAi:2074 NextBio:8437
ArrayExpress:Q03468 Bgee:Q03468 CleanEx:HS_ERCC6
Genevestigator:Q03468 GermOnline:ENSG00000032514 GO:GO:0000303
Uniprot:Q03468
Length = 1493
Score = 474 (171.9 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 128/402 (31%), Positives = 205/402 (50%)
Query: 1 MSMWQSELHKWLPS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLS 58
M W E H W P V+ ++ G+ + ++VA +L+T+Y +I + +S
Sbjct: 578 MHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLIRDVAHCH-GILITSYSYIRLMQDDIS 636
Query: 59 KVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 118
+ DW Y+I+DE ++++ + + ++R R++L+G+P+QN+ P
Sbjct: 637 RYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGK 696
Query: 119 FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 178
F + FS P G + NA ++T K + L + P++LRR DV+ S
Sbjct: 697 LGTLPVFMEQFSVPITMGGYS-NASPVQVKTAYKCACV--LRDTINPYLLRRMKSDVKMS 753
Query: 179 L--PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNR 236
L P K VL CR++ Q +Y VD + E R+ + +++ L
Sbjct: 754 LSLPDKNEQVLFCRLTDEQHKVYQNF-------VDSK-EVYRILNG---EMQIFSGL--- 799
Query: 237 CMELRKTCNHPLL------NYPYFSD--LSKD-F-LVKSCGKLWILDRILIKLQRTGHRV 286
+ LRK CNHP L N D L +D F K GK+ +++ +L + G RV
Sbjct: 800 -IALRKICNHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRV 858
Query: 287 LLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 346
LLFS ++LDILE +L+ ++ Y ++DGTT++ R+ I +N D+ F+FLL+ R
Sbjct: 859 LLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNE-DTSIFVFLLTTRVG 917
Query: 347 GRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
G G+NL A+ V+IYDPD NP + QA RA RIGQK++V V
Sbjct: 918 GLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTV 959
Score = 60 (26.2 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 23/90 (25%), Positives = 39/90 (43%)
Query: 811 PSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPG-HTEDAADHFKESWDGKIANASGSSN 869
P+ K R ++ +N S + C G ++ D+ E + G+ +A SS
Sbjct: 1324 PAGKKSR-FGKKRNSNFSVQHPSSTSPTEKCQDGIMKKEGKDNVPEHFSGRAEDADSSSG 1382
Query: 870 FSAKMSDVIQRRCKNVISKLQRRIEKE-GH 898
A S + + R +N + L R+E E GH
Sbjct: 1383 PLASSSLLAKMRARNHLI-LPERLESESGH 1411
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 478 (173.3 bits), Expect = 3.4e-41, Sum P(2) = 3.4e-41
Identities = 126/348 (36%), Positives = 188/348 (54%)
Query: 140 HNADD--DWLETEKKV---IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAI 194
++ADD W +T+ + ++ RLH +L+PF+LRR DVE SLPPK I + +S +
Sbjct: 366 NSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKM 425
Query: 195 QSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL----- 249
Q +W +D + ++ K L N M+LRK CNHP L
Sbjct: 426 QR---EWYTKILMKDIDVLNSAGKMDK---------MRLLNILMQLRKCCNHPYLFDGAE 473
Query: 250 -NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 308
PY +D + +V + GK+ +LD++L KL+ G RVL+FS MT+LLDILE+Y WR
Sbjct: 474 PGPPYTTD---EHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGY 530
Query: 309 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPK 368
Y R+DG T E+RE AI FN +S FIF+LS RA G G+NL SAD VI+YD D NP+
Sbjct: 531 EYCRLDGQTPHEEREEAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQ 590
Query: 369 NEEQAVARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--RSGGTVDLEDDL 419
+ QA+ RAHRIGQK+ V+V + E +V++ + D + + G +D + +
Sbjct: 591 VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNK 650
Query: 420 AGKDRYIGSIEGLIRNNIQQYKIDMADEVINA--GRFDQRTTHEERRM 465
K+ + I + + ++ DE I R +++T R+
Sbjct: 651 MAKEEMLQMIRHGATHVFASKESELTDEDITTLLERGERKTAEMNERL 698
Score = 321 (118.1 bits), Expect = 2.8e-23, Sum P(3) = 2.8e-23
Identities = 71/196 (36%), Positives = 109/196 (55%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W +E +W+PS+ I +VG KD R+ E+ +++V VT+YE ++ ++S K W+
Sbjct: 250 WMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWR 309
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+ P+VF++
Sbjct: 310 YLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAD 369
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F WF T N D +K ++ RLH +L+PF+LRR DVE SLPPK
Sbjct: 370 DFDSWFD--------TKNCLGD----QK---LVERLHAVLKPFLLRRIKTDVEKSLPPKK 414
Query: 184 SIVLRCRMSAIQSAIY 199
I + +S +Q Y
Sbjct: 415 EIKIYLGLSKMQREWY 430
Score = 42 (19.8 bits), Expect = 2.8e-23, Sum P(3) = 2.8e-23
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 453 RFDQRTTHEERRMTLE 468
R D +T HEER +E
Sbjct: 534 RLDGQTPHEEREEAIE 549
Score = 37 (18.1 bits), Expect = 3.4e-41, Sum P(2) = 3.4e-41
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 756 VERPEERSCT-DTPLHR-GDSSLLPFQMDNK 784
+ER E ++ + L + G+SSL F+MD +
Sbjct: 684 LERGERKTAEMNERLQKMGESSLRNFRMDTE 714
>UNIPROTKB|E1BFL2 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:DAAA02062232 EMBL:DAAA02062233 EMBL:DAAA02062234
EMBL:DAAA02062235 IPI:IPI00733931 Ensembl:ENSBTAT00000046144
Uniprot:E1BFL2
Length = 1482
Score = 473 (171.6 bits), Expect = 5.9e-41, Sum P(3) = 5.9e-41
Identities = 130/408 (31%), Positives = 206/408 (50%)
Query: 1 MSMWQSELHKWLPS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLS 58
M W E H W P+ V+ ++ G+ + +++A +L+T+Y +I + +S
Sbjct: 569 MHQWVKEFHTWWPAFRVAVLHETGSFTHKKEKLVRDIARCH-GILITSYSYIRLMQDDIS 627
Query: 59 KVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 118
+ DW Y+I+DE ++++ + + ++R R++L+G+P+QN+ P
Sbjct: 628 RHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGK 687
Query: 119 FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 178
F + FS P G + NA ++T K + L + P++LRR DV+ S
Sbjct: 688 LGTLPVFMEQFSVPITMGGYS-NASPVQVKTAYKCACV--LRDTINPYLLRRMKSDVKMS 744
Query: 179 L--PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNR 236
L P K VL CR++ DE+ +V +N I +VY+ LN
Sbjct: 745 LSLPDKNEQVLFCRLT---------------------DEQHKVYQNFIDSKEVYRILNGE 783
Query: 237 C------MELRKTCNHPLL------NYPYFSD--LSKD-F-LVKSCGKLWILDRILIKLQ 280
+ LRK CNHP L N D L +D F K GK+ +++ +L
Sbjct: 784 MQIFSGLVALRKICNHPDLFSGGPKNLKGIPDEELGEDQFGYWKRSGKMIVVESLLKIWH 843
Query: 281 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 340
+ G RVLLFS ++LDILE +L+ ++ Y ++DGTT++ R+ I +N D+ F+FL
Sbjct: 844 KQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTAIASRQPLITRYNE-DTSIFVFL 902
Query: 341 LSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
L+ R G G+NL A+ VIIYDPD NP + QA RA RIGQK++V V
Sbjct: 903 LTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTV 950
Score = 59 (25.8 bits), Expect = 5.9e-41, Sum P(3) = 5.9e-41
Identities = 20/91 (21%), Positives = 38/91 (41%)
Query: 811 PSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTE-DAADHFKESWDGKIANASGSSN 869
P+ K R ++ ++ R S + + C + + DH E + GK + SS
Sbjct: 1312 PAGKKSR-FGQKRNSSFSVQRPSSTSPKEKCQDSTVKKEGKDHVSEHFSGKAEDTESSSG 1370
Query: 870 FSAKMSDVIQRRCKNVISKLQRRIEKEGHQI 900
S + + R +N + L R+E E ++
Sbjct: 1371 ALTSSSLLAKMRARNHLI-LPERLESESGRL 1400
Score = 45 (20.9 bits), Expect = 5.9e-41, Sum P(3) = 5.9e-41
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 714 DSHM-DHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHR 771
+ H+ +Q+ S H RD + E P + +KR R R +ERS D L +
Sbjct: 1185 EKHLRPNQKPKSSKHRRD-AKFEGTRIPHLVKKRQYRRRDPAAESEAKERSHDDYVLEK 1242
Score = 38 (18.4 bits), Expect = 9.0e-39, Sum P(3) = 9.0e-39
Identities = 19/85 (22%), Positives = 28/85 (32%)
Query: 822 RKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASG----SSNFSAKMSDV 877
R +A AP + S + N ++ KE G S +FS K D
Sbjct: 1306 RVLAGAPAGKKSRFGQKRNSSFSVQRPSSTSPKEKCQDSTVKKEGKDHVSEHFSGKAEDT 1365
Query: 878 IQRRCKNVISKLQRRIEKEGHQIVP 902
S L ++ H I+P
Sbjct: 1366 ESSSGALTSSSLLAKMRARNHLILP 1390
>UNIPROTKB|Q5FWR0 [details] [associations]
symbol:smarcad1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439
HOVERGEN:HBG055804 OrthoDB:EOG4RV2QW EMBL:AAMC01061573
EMBL:AAMC01061574 EMBL:AAMC01061575 EMBL:BC089242
RefSeq:NP_001015697.1 UniGene:Str.34312 ProteinModelPortal:Q5FWR0
GeneID:548414 KEGG:xtr:548414 Xenbase:XB-GENE-492700
InParanoid:Q5FWR0 Uniprot:Q5FWR0
Length = 1003
Score = 309 (113.8 bits), Expect = 6.5e-41, Sum P(2) = 6.5e-41
Identities = 75/187 (40%), Positives = 112/187 (59%)
Query: 239 ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDI 298
EL + CN Y L K+ ++ S GK IL+++L +++ G RV+LFS T +LDI
Sbjct: 806 ELHRLCNEFTTLSQY--KLEKELILDS-GKFNILEKLLSDIKKKGDRVVLFSQFTMMLDI 862
Query: 299 LEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 358
+E +L+ Q Y R+DG T + +R I +FN+ D D FIFLLS +A G G+NL SA+ V
Sbjct: 863 IEVFLRHHQHRYVRLDGKTQISERIHLIDEFNT-DMDIFIFLLSTKAGGLGINLTSANIV 921
Query: 359 IIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM--EAVVDKISSHQKEDELRSGGTVDLE 416
I++D D NP N++QA R HR+GQ +EVKVI + + +++ + +LR LE
Sbjct: 922 ILHDIDCNPYNDKQAEDRCHRVGQTKEVKVIKLIGKGTIEESMLKISQQKLR------LE 975
Query: 417 DDLAGKD 423
D+ D
Sbjct: 976 QDMTTND 982
Score = 219 (82.2 bits), Expect = 6.5e-41, Sum P(2) = 6.5e-41
Identities = 58/203 (28%), Positives = 100/203 (49%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRL-FSQEVAALKFNVLVTTYEFIMY---DRSK 56
M W E ++W PS++ + Y G++++R L + ++FNV+VTTY + DRS
Sbjct: 534 MDNWIREFNQWCPSMNILLYYGSQEERKHLRYDILNKVVEFNVIVTTYNCAISSAEDRSL 593
Query: 57 LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXP 116
++ + + DE +K+ ++ + L + RLLLTGTP+QN+ P
Sbjct: 594 FRRLKLNFAVFDEGHMLKNMSAIRYQHLMTLNARSRLLLTGTPVQNNLLELMSLLNFVMP 653
Query: 117 EVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVE 176
+F + + + F + + + + E E+ I H QI++PF+LRR +V
Sbjct: 654 HMFSSSTSE---IKRLFSSKAKSTD-EQTIFEKER---IAHA-KQIMKPFILRRVKSEVL 705
Query: 177 GSLPPKVSIVLRCRMSAIQSAIY 199
LPPK + C+MS Q +Y
Sbjct: 706 KQLPPKQDKIKFCQMSKKQEQLY 728
Score = 105 (42.0 bits), Expect = 5.8e-29, Sum P(2) = 5.8e-29
Identities = 35/105 (33%), Positives = 51/105 (48%)
Query: 151 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 210
+K I H QI++PF+LRR +V LPPK + C+MS Q +Y
Sbjct: 681 EKERIAHA-KQIMKPFILRRVKSEVLKQLPPKQDKIKFCQMSKKQEQLYS---------- 729
Query: 211 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS 255
D +++K+ I + L N M LRK NHPLL+ Y++
Sbjct: 730 ---DLLNKLKKS-IDATEKNSELCNVMMHLRKMANHPLLHRQYYT 770
Score = 39 (18.8 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 884 NVISKLQRRIEKEGHQIV 901
N++ KL I+K+G ++V
Sbjct: 834 NILEKLLSDIKKKGDRVV 851
Score = 37 (18.1 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 19/79 (24%), Positives = 33/79 (41%)
Query: 458 TTHEERRMTLE-TLLHDEERYQETVHDVPSLQEVNRMIA---RSEDEVELFDQMDEEFGW 513
T E R+ E T L + +E + D + ++++ + D V LF Q
Sbjct: 803 TDFELHRLCNEFTTLSQYKLEKELILDSGKFNILEKLLSDIKKKGDRVVLFSQFTMMLDI 862
Query: 514 IEEMTRYDQVPKWLRASTK 532
IE R+ Q +++R K
Sbjct: 863 IEVFLRHHQ-HRYVRLDGK 880
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 468 (169.8 bits), Expect = 1.3e-40, P = 1.3e-40
Identities = 120/269 (44%), Positives = 162/269 (60%)
Query: 144 DDWLETEK----KVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 199
DDW +E + I+ +LH +L+PF+LRR DVE SL PK + L MS++Q
Sbjct: 382 DDWFSSESTEEDQDKIVKQLHTVLQPFLLRRIKSDVETSLLPKKELNLYVGMSSMQKK-- 439
Query: 200 DWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT-LNNRCMELRKTCNHPLL------NYP 252
W K L D + N +K KT L N M+LRK CNHP L P
Sbjct: 440 -WYKKI--LEKDLD------AVNGSNGSKESKTRLLNIMMQLRKCCNHPYLFDGAEPGPP 490
Query: 253 YFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 312
Y +D + LV + KL +LD++L KL+ G RVL+FS M++LLDILE+Y +R Y R
Sbjct: 491 YTTD---EHLVYNAAKLQVLDKLLKKLKEEGSRVLIFSQMSRLLDILEDYCYFRNYEYCR 547
Query: 313 IDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQ 372
IDG+T+ EDR AI D+N+ DS F+FLL+ RA G G+NL SAD V++YD D NP+ + Q
Sbjct: 548 IDGSTAHEDRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQ 607
Query: 373 AVARAHRIGQKREVKVIYM---EAVVDKI 398
A+ RAHRIGQK++VKV + +V +KI
Sbjct: 608 AMDRAHRIGQKKQVKVFRLVTDNSVEEKI 636
Score = 343 (125.8 bits), Expect = 4.2e-27, P = 4.2e-27
Identities = 73/199 (36%), Positives = 117/199 (58%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
++ W E+++W P V+ G K++R+ L +++ F+V++ +YE I+ ++S L K+
Sbjct: 257 LNNWLREINRWTPDVNAFILQGDKEERAELIQKKLLGCDFDVVIASYEIIIREKSPLKKI 316
Query: 61 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFD 120
+W+YIIIDEA R+K+ ES+L++ L + + RLL+TGTPLQN+ P++F
Sbjct: 317 NWEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPLQNNLHELWALLNFLLPDIFS 376
Query: 121 NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP 180
+ + F DWFS +E D D K I+ +LH +L+PF+LRR DVE SL
Sbjct: 377 DAQDFDDWFSSESTEE------DQD------K--IVKQLHTVLQPFLLRRIKSDVETSLL 422
Query: 181 PKVSIVLRCRMSAIQSAIY 199
PK + L MS++Q Y
Sbjct: 423 PKKELNLYVGMSSMQKKWY 441
>UNIPROTKB|F1SDX0 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 KO:K10841 OMA:NGEMQIF GO:GO:0000303
EMBL:CT990602 EMBL:CT990615 RefSeq:XP_003483566.1
Ensembl:ENSSSCT00000011375 GeneID:100738583 KEGG:ssc:100738583
Uniprot:F1SDX0
Length = 1481
Score = 472 (171.2 bits), Expect = 1.6e-40, Sum P(3) = 1.6e-40
Identities = 129/408 (31%), Positives = 206/408 (50%)
Query: 1 MSMWQSELHKWLPS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLS 58
M W E H W P V+ ++ G+ + +++A +L+T+Y +I + +S
Sbjct: 567 MHQWVKEFHTWWPPFRVAILHETGSFTHKKEKLVRDIAHCH-GILITSYSYIRLMQDDIS 625
Query: 59 KVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 118
+ DW Y+I+DE ++++ + + ++R R++L+G+P+QN+ P
Sbjct: 626 RHDWHYVILDEGHKIRNPNAAITLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGK 685
Query: 119 FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 178
F + FS P G + NA ++T K + L + P++LRR DV+ S
Sbjct: 686 LGTLPVFMEQFSVPITMGGYS-NASPVQVKTAYKCACV--LRDTINPYLLRRMKSDVKMS 742
Query: 179 L--PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNR 236
L P K VL CR++ DE+ +V +N I +VY+ LN
Sbjct: 743 LSLPDKNEQVLFCRLT---------------------DEQHKVYQNFIDSKEVYRILNGE 781
Query: 237 C------MELRKTCNHPLL------NYPYF--SDLSKD-F-LVKSCGKLWILDRILIKLQ 280
+ LRK CNHP L N+ +L +D F K GK+ +++ +L
Sbjct: 782 MQIFSGLVALRKICNHPDLFSGGPKNFKGIPGEELEEDQFGYWKRSGKMIVVESLLKIWH 841
Query: 281 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 340
+ G RVLLFS ++LDILE +L+ ++ Y ++DGTT++ R+ I +N D+ F+FL
Sbjct: 842 KQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTTIASRQPLITRYNE-DASIFVFL 900
Query: 341 LSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
L+ R G G+NL A+ VIIYDPD NP + QA RA RIGQK++V V
Sbjct: 901 LTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTV 948
Score = 57 (25.1 bits), Expect = 1.6e-40, Sum P(3) = 1.6e-40
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 847 EDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKE-GH 898
+D D E + GK+ +A SS S + + R +N + L R+E E GH
Sbjct: 1347 KDGKDSVSEHFSGKVEDAELSSGALTSSSLLAKMRARNHLI-LPARLESESGH 1398
Score = 44 (20.5 bits), Expect = 1.6e-40, Sum P(3) = 1.6e-40
Identities = 14/61 (22%), Positives = 26/61 (42%)
Query: 533 EVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEAS 592
++NA+ + + K+I G+ I + E K P+ P D +G ++A
Sbjct: 1047 DLNASANDATPSEEKSIAMGAEINAATSNQEDPLKDAPQT---PRSLTSSDRLGGETDAE 1103
Query: 593 S 593
S
Sbjct: 1104 S 1104
Score = 44 (20.5 bits), Expect = 3.5e-39, Sum P(3) = 3.5e-39
Identities = 40/182 (21%), Positives = 67/182 (36%)
Query: 714 DSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGD 773
+ H+ +Q + R + + E P + +KR + + +ERS D L +
Sbjct: 1184 EKHLRPKQKPKNSKHRRDAKFEGTRIPHLVKKRQYQRQDNENESEVKERSNDDYVLEKLF 1243
Query: 774 SSLLPFQMDNKYPAQL--RTDTEMKAHGESNSLRHDQSEPSSKSRRN-------LPS--- 821
+ K+ A + + M E+N + D + SR+ +P+
Sbjct: 1244 KKSVGVHSVMKHDAIMDGASPDYMLVEAEANRVAQDALKALRLSRQRCLGAASGVPTWTG 1303
Query: 822 -RKIANAP---KSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDV 877
R +A AP KSR K N H A+ K S DG I G + S S
Sbjct: 1304 HRGLAGAPAGRKSRFGQKRNS-NFAVQHPSSASPKEK-SQDG-ILKKDGKDSVSEHFSGK 1360
Query: 878 IQ 879
++
Sbjct: 1361 VE 1362
Score = 40 (19.1 bits), Expect = 2.9e-39, Sum P(2) = 2.9e-39
Identities = 20/101 (19%), Positives = 35/101 (34%)
Query: 376 RAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRN 435
R R GQKR ++ L+ G + + +GK G + +
Sbjct: 1314 RKSRFGQKRNSNFAVQHPSSASPKEKSQDGILKKDGKDSVSEHFSGKVEDAELSSGALTS 1373
Query: 436 NIQQYKIDMADEVINAGRFDQRTTH-EERRMTLETLL-HDE 474
+ K+ + +I R + + H E L + HDE
Sbjct: 1374 SSLLAKMRARNHLILPARLESESGHVPEASAPLPSSTEHDE 1414
>UNIPROTKB|I3LDG1 [details] [associations]
symbol:LOC100738357 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00560000077077 EMBL:FP236283
Ensembl:ENSSSCT00000031310 OMA:ENWRTEL Uniprot:I3LDG1
Length = 323
Score = 442 (160.7 bits), Expect = 1.6e-40, P = 1.6e-40
Identities = 127/342 (37%), Positives = 172/342 (50%)
Query: 50 IMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXX 109
I+ D +L K+ W +IIDEA R+K+R L L + ++LLTGTPLQN
Sbjct: 2 ILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELFS 61
Query: 110 XXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 169
P F + AF + F L+TE++V +L IL+P MLR
Sbjct: 62 LLNFLEPSQFPSETAFLEEFGD---------------LKTEEQV---KKLQSILKPMMLR 103
Query: 170 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKV 229
R +DVE +L PK ++ ++ IQ Y I + K Q N
Sbjct: 104 RLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLT----KGANQHN------- 152
Query: 230 YKTLNNRCMELRKTCNHP-LLN---YPYFSDLSK-------DF----LVKSCGKLWILDR 274
L N MELRK CNHP L+N D K DF ++++ GKL ++D+
Sbjct: 153 MPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDK 212
Query: 275 ILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDS 334
+L KL GH+VL+FS M + LDILE+YL R+ Y RIDG R++AI F DS
Sbjct: 213 LLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDS 272
Query: 335 DCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVAR 376
D F+FLL RA G G+NL +ADT II+D D NP+N+ Q R
Sbjct: 273 DRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQVTIR 314
>UNIPROTKB|E1BYA8 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000303 "response to superoxide" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006290 "pyrimidine dimer
repair" evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:AADN02027759 EMBL:AADN02027760 IPI:IPI00592927
Ensembl:ENSGALT00000010107 Uniprot:E1BYA8
Length = 1498
Score = 471 (170.9 bits), Expect = 2.7e-40, Sum P(2) = 2.7e-40
Identities = 131/409 (32%), Positives = 203/409 (49%)
Query: 1 MSMWQSELHKWLPS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLS 58
M W E H W P V+ ++ G+ + +E+A+ +L+T+Y +I + +
Sbjct: 573 MHQWVKEFHTWWPPFRVAILHETGSYTNKKVKLIREIASCH-GILITSYSYIRLMQDNIH 631
Query: 59 KVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 118
DW Y+I+DE ++++ + + ++R R++L+G+P+QN+ P
Sbjct: 632 SYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLKELWSLFDFVFPGK 691
Query: 119 FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 178
F + FS P G + NA ++T K + L + P++LRR DV+ S
Sbjct: 692 LGTLPVFMEQFSVPITMGGYS-NASPVQVKTAYKCACV--LRDAINPYLLRRMKADVKMS 748
Query: 179 L--PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLN-- 234
L P K VL CR++ DE+R+V +N I +VY+ LN
Sbjct: 749 LSLPDKNEQVLFCRLT---------------------DEQRQVYQNFIDSKEVYQILNGD 787
Query: 235 ----NRCMELRKTCNHP--------LLNYPYFSDLSK--DF-LVKSCGKLWILDRILIKL 279
+ + LRK CNHP +L +DL + F K GK+ +++ +L
Sbjct: 788 MQVFSGLVALRKICNHPDLFSGGPKILKCVPDADLEEADQFGYWKRSGKMIVVESLLKIW 847
Query: 280 QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 339
+ GHRVL F+ ++L ILE +L+ R Y R+DGTT++ R+ I +N D FIF
Sbjct: 848 HKQGHRVLFFTQSRQMLQILEVFLRDRNYSYLRMDGTTTIASRQPLITRYNE-DKSIFIF 906
Query: 340 LLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
LL+ R G G+NL AD VIIYDPD NP + QA RA RIGQK++V V
Sbjct: 907 LLTTRVGGIGVNLTGADRVIIYDPDWNPSTDTQARERAWRIGQKKQVTV 955
Score = 51 (23.0 bits), Expect = 2.7e-40, Sum P(2) = 2.7e-40
Identities = 27/125 (21%), Positives = 53/125 (42%)
Query: 752 PRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEP 811
P+H ++R ER D L G L KY + + + H ++S + E
Sbjct: 1028 PKHQLKRKLERPADDDTLKGGLH--LKKSSSPKYSKS--SSSHLTRHRANSS---EAIET 1080
Query: 812 SSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFS 871
S +++ NL + + K A T +N + +++ + S + +GSS +
Sbjct: 1081 SEEAKGNLETFDQNSYAKDNAETATD-INSVNKSKQESLERADISLSQSLPGGAGSSE-N 1138
Query: 872 AKMSD 876
AK+++
Sbjct: 1139 AKVTE 1143
Score = 40 (19.1 bits), Expect = 6.7e-38, Sum P(3) = 6.7e-38
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 715 SHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKR 746
SH H++ H +D + + + +K+KR
Sbjct: 1198 SHDSHKEKSKKKHHKDAKFEGERIPHLVKQKR 1229
Score = 37 (18.1 bits), Expect = 6.7e-38, Sum P(3) = 6.7e-38
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 857 WDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEG 897
+DGK SS+ S + + R +N + L +R EG
Sbjct: 1373 FDGKSETGESSSSILDSSSLLAKMRARNHLI-LPQRTGNEG 1412
>UNIPROTKB|D3ZZZ1 [details] [associations]
symbol:Ercc6 "Protein Ercc6" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311509
GO:GO:0005524 GO:GO:0008630 GO:GO:0005730 GO:GO:0006284
GO:GO:0003677 GO:GO:0009636 GO:GO:0003682 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257
GO:GO:0006283 GO:GO:0008094 GO:GO:0008023 GO:GO:0032786
GO:GO:0006290 GO:GO:0007256 GO:GO:0000303 IPI:IPI00358023
Ensembl:ENSRNOT00000038493 ArrayExpress:D3ZZZ1 Uniprot:D3ZZZ1
Length = 1475
Score = 460 (167.0 bits), Expect = 2.9e-40, Sum P(3) = 2.9e-40
Identities = 128/403 (31%), Positives = 201/403 (49%)
Query: 1 MSMWQSELHKWLPS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLS 58
M W E H W P V+ ++ G+ R +++ VL+T+Y +I + +S
Sbjct: 572 MHQWVKEFHTWWPPFRVAILHETGSCAHRKERLVRDIVHCH-GVLITSYSYIRLMQDDIS 630
Query: 59 KVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 118
+ DW Y+I+DE ++++ + + ++R R++L+G+P+QN+ P
Sbjct: 631 RHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFTFPGK 690
Query: 119 FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 178
F + FS P G + NA ++T K + L + P++LRR DV+ S
Sbjct: 691 LGTLPVFMEQFSVPITMGGYS-NASPVQVKTAYKCACV--LRDTINPYLLRRMKSDVKMS 747
Query: 179 L--PPKVSIVLRCRMSAIQSAIY-DWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNN 235
L P K VL CR++ Q +Y ++I + R+ + N I+ V
Sbjct: 748 LSLPDKNEQVLFCRLTDEQHKVYQNFIDSKAVYRILNGE-------NQIFSGLV------ 794
Query: 236 RCMELRKTCNHPLL--NYPY-FSDLSKDFLV-------KSCGKLWILDRILIKLQRTGHR 285
LRK CNHP L P S L +D L K GK+ +++ +L + G R
Sbjct: 795 ---ALRKICNHPDLFSGGPKNTSALPEDGLEEEQFGYWKRSGKMIVVESLLKIWHKQGQR 851
Query: 286 VLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 345
VLLFS ++L ILE +L+ + Y ++DGTT++ R+ I +N D+ F+FLL+ R
Sbjct: 852 VLLFSQSRQMLHILEVFLRAHKYSYLKMDGTTTIASRQPLITKYNE-DTSIFVFLLTTRV 910
Query: 346 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
G G+NL A+ VIIYDPD NP + QA RA RIGQK++V V
Sbjct: 911 GGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTV 953
Score = 63 (27.2 bits), Expect = 2.9e-40, Sum P(3) = 2.9e-40
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 816 RRNLPSRKIANAPKSRASLKTGRL-NCMPGHTE-DAADHFKESWDGKIANASGSSNFSAK 873
++ ++ ++ P R S T R N M E A+HF DG A++SG+ + S+
Sbjct: 1311 KKRFGQKRNSSLPVQRPSSLTERTQNNMKKEGEAHTAEHFSGKEDG--ASSSGAPSSSSL 1368
Query: 874 MSDVIQRRCKNVISKLQRRIEKEGHQI 900
++ + R +N + L R+E +G Q+
Sbjct: 1369 LA---RMRARNHMI-LPERLESDGEQL 1391
Score = 51 (23.0 bits), Expect = 5.1e-39, Sum P(3) = 5.1e-39
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 774 SSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPS 821
+S LP Q + RT MK GE+++ H + S PS
Sbjct: 1319 NSSLPVQRPSSLTE--RTQNNMKKEGEAHTAEHFSGKEDGASSSGAPS 1364
Score = 48 (22.0 bits), Expect = 2.9e-40, Sum P(3) = 2.9e-40
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 706 EGEI--AVSGDSHMDHQQSGSWT-------HDRDEGED-EQVLQPKIKRKRS 747
EGE A +G H+ Q G ++ HD E E E+ QPK K K S
Sbjct: 1141 EGECCQAQTGPVHLSEQTEGHFSKHKSKRKHDAAEEETTEKCPQPKQKAKNS 1192
Score = 44 (20.5 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 890 QRRIEKEG--HQIVPLLT-DLWKRIETSGYVSGAGNNILDLR 928
QRR K +++ L + D + ETS +G G+NI L+
Sbjct: 986 QRRFFKSNDLYELFTLTSPDASQGTETSAIFAGTGSNIQTLK 1027
Score = 43 (20.2 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 786 PAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSR 831
P L TE + +HD +E + + P +K N+ R
Sbjct: 1151 PVHLSEQTEGHFSKHKSKRKHDAAEEETTEKCPQPKQKAKNSRHHR 1196
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 465 (168.7 bits), Expect = 5.4e-40, Sum P(2) = 5.4e-40
Identities = 130/347 (37%), Positives = 185/347 (53%)
Query: 144 DDWLETEKKV---IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYD 200
D+W T + +I RLH +L+PF+LRR +VE L PK + + +S +Q D
Sbjct: 314 DEWFNTNTCLGDDALITRLHAVLKPFLLRRLKAEVEKRLKPKKEMKIFVGLSKMQR---D 370
Query: 201 WIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL------NYPYF 254
W +D + +V+K L N M+LRK NHP L PY
Sbjct: 371 WYTKVLLKDIDVVNGAGKVEK---------MRLQNILMQLRKCTNHPYLFDGAEPGPPYT 421
Query: 255 SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRID 314
+D LV + GK+ ILD++L KLQ G RVL+FS MT++LDILE+Y WR Y R+D
Sbjct: 422 TDTH---LVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLD 478
Query: 315 GTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAV 374
G T EDR I +FN +S F+F+LS RA G G+NL +AD VIIYD D NP+ + QA+
Sbjct: 479 GQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAM 538
Query: 375 ARAHRIGQKREVKVIYM--EAVVDKISSHQKEDELR------SGGT-VDLEDDLAGKDRY 425
RAHRIGQK++V+V + E+ V++ + E +LR GG VD + KD
Sbjct: 539 DRAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGRLVDNRSNQLNKDEM 598
Query: 426 IGSIEGLIRNNIQQYKIDMADEVINA--GRFDQRTTHEERRMTLETL 470
+ I + D+ DE I+ R + +T E++ L++L
Sbjct: 599 LNIIRFGANQVFSSKETDITDEDIDVILERGEAKTA--EQKAALDSL 643
Score = 284 (105.0 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 71/227 (31%), Positives = 118/227 (51%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W +E KW PS+ + +G +D R+ + +++V VT+YE + ++S K +W+
Sbjct: 192 WVNEFKKWCPSLRAVCLIGDQDTRNTFIRDVLMPGEWDVCVTSYEMCIREKSVFKKFNWR 251
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y++IDEA R+K+ +S L+ L ++ RLL+TGTPLQN+ P+VF++ +
Sbjct: 252 YLVIDEAHRIKNEKSKLSEILREFKTANRLLITGTPLQNNLHELWALLNFLLPDVFNSSE 311
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F +WF+ T DD +I RLH +L+PF+LRR +VE L PK
Sbjct: 312 DFDEWFNTN------TCLGDD---------ALITRLHAVLKPFLLRRLKAEVEKRLKPKK 356
Query: 184 SIVLRCRMSAIQSAIYDWI--KATGTLRVDPEDEKRRVQKNPIYQAK 228
+ + +S +Q Y + K + + EK R+Q N + Q +
Sbjct: 357 EMKIFVGLSKMQRDWYTKVLLKDIDVVNGAGKVEKMRLQ-NILMQLR 402
Score = 48 (22.0 bits), Expect = 5.4e-40, Sum P(2) = 5.4e-40
Identities = 28/132 (21%), Positives = 61/132 (46%)
Query: 452 GRFDQRTTHEERRMTLETLLHDE-ERYQETVHDVPSLQEVNRMIARSEDEVE--LFDQMD 508
G+ ++ +RR++++ L + RY+ H + LQ N ++ E+E M
Sbjct: 857 GQIERGEGKIQRRLSIKKALDQKMSRYRAPFHQL-RLQYGNNK-GKNYTEIEDRFLVCML 914
Query: 509 EEFGWIEEMTRYDQVPKWLRASTKE------VNATIANLSKKPSK--NILFGSNIGVDSG 560
+ G+ +E Y+++ +RAS + + T L ++ + ++ NI ++
Sbjct: 915 HKLGFDKENV-YEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIERENIELEEK 973
Query: 561 EIETERKRGPKG 572
E ++K+ PKG
Sbjct: 974 ERAEKKKKAPKG 985
Score = 42 (19.8 bits), Expect = 2.3e-39, Sum P(2) = 2.3e-39
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 878 IQRRCKNVISKLQRR-IEKE 896
+QRRC +I+ ++R IE E
Sbjct: 952 LQRRCNTLITLIERENIELE 971
>ZFIN|ZDB-GENE-091113-61 [details] [associations]
symbol:si:dkey-76p7.6 "si:dkey-76p7.6" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-091113-61 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 GO:GO:0035861 GeneTree:ENSGT00630000089890
EMBL:BX927385 IPI:IPI00901431 Ensembl:ENSDART00000113101
Bgee:E7F1C4 Uniprot:E7F1C4
Length = 954
Score = 316 (116.3 bits), Expect = 5.7e-40, Sum P(2) = 5.7e-40
Identities = 78/191 (40%), Positives = 112/191 (58%)
Query: 239 ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDI 298
EL + C + Y L+ D L+ S GKL +L ++L L+ G RV+LFS T +LDI
Sbjct: 757 ELHRLCQQYSALHEY--QLNTDVLLDS-GKLSLLTQLLNSLKEKGDRVVLFSQFTMMLDI 813
Query: 299 LEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 358
LE +L+ + Y R+DG+T + DR I FN+ D D F+FLLS RA G G+NL SA+ V
Sbjct: 814 LEVFLRHHKHRYNRLDGSTPMSDRIGLIDQFNT-DQDIFVFLLSTRAGGLGINLTSANVV 872
Query: 359 IIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVD---KISSHQKEDELRSGGT 412
I++D D NP N++QA R HR+GQ + VKVI + +++ D +I + + E T
Sbjct: 873 ILHDIDCNPYNDKQAEGRCHRVGQTKTVKVIKLISKDSIEDTMLRIGERKLKLEQEMTAT 932
Query: 413 VDLEDDLAGKD 423
D E+D D
Sbjct: 933 QDGEEDTLPDD 943
Score = 202 (76.2 bits), Expect = 5.7e-40, Sum P(2) = 5.7e-40
Identities = 65/222 (29%), Positives = 99/222 (44%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA--ALKFNVLVTTYEFIM---YDRSKLS 58
W EL+ W PS + Y G+ D R + E+ +++N++V+TY + DRS
Sbjct: 492 WVRELNLWCPSFKVLVYYGSADDR-KYMRYEILNQIVEYNIIVSTYNLAIGNSSDRSLFC 550
Query: 59 KVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 118
K+ +Y + DE +K+ S+ R L + RLLLTGTPLQN+ P +
Sbjct: 551 KLKLEYAVFDEGHLLKNMNSLRYRHLMAINAKYRLLLTGTPLQNNLLELMSLLNFIMPNM 610
Query: 119 FDNRKA-FHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG 177
F + + FS +E + D T K+I ++PF+LRR +V
Sbjct: 611 FSSSTSQIAKMFSMKSSEEQSSFERDRI---THAKLI--------MKPFILRRVKSEVLK 659
Query: 178 SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRV 219
LP K V C MS Q +Y + L+ EKR +
Sbjct: 660 QLPAKEEQVEFCAMSERQQELYSAL--LHKLKHSSNGEKREL 699
Score = 89 (36.4 bits), Expect = 1.8e-27, Sum P(3) = 1.8e-27
Identities = 31/94 (32%), Positives = 43/94 (45%)
Query: 162 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK 221
I++PF+LRR +V LP K V C MS Q +Y + L+ EKR
Sbjct: 644 IMKPFILRRVKSEVLKQLPAKEEQVEFCAMSERQQELYSAL--LHKLKHSSNGEKRE--- 698
Query: 222 NPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS 255
L N M+LRK NHPLL+ +++
Sbjct: 699 -----------LTNVMMQLRKMSNHPLLHRQFYT 721
Score = 46 (21.3 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 36/185 (19%), Positives = 69/185 (37%)
Query: 85 DRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADD 144
D + +RR + G+ ++D E R + + Q++ P N ++
Sbjct: 136 DSVQQRRRQQMCGSSQESDSRKGGRVSAADDSEEEGQRSKDQERMLRKLQRKFPHLNKNE 195
Query: 145 --DWLETEKKVIIIHRLH--QILEPFMLRRRVEDVEGSLPPK-VSIVLRCRMSAIQSAIY 199
D L+ E +I L ++ ++ + + S P K V R A + +
Sbjct: 196 LRDVLQ-EHDWLIDDALETLRMFSDLVVESEDDSSQTSTPAKHTRRVAETRPQAQVTKLS 254
Query: 200 DWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSK 259
K + +D +R+ K PI Y + C + + + LL+ SD S+
Sbjct: 255 SPPKPKPSRPLDGTRTSQRIAKQPILAKYTYVSSEEECSDSEASVVNGLLDSD--SDQSE 312
Query: 260 DFLVK 264
+ L K
Sbjct: 313 ETLSK 317
Score = 41 (19.5 bits), Expect = 1.8e-27, Sum P(3) = 1.8e-27
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 68 DEAQRMKDRESVLARDLDR 86
+E QR KD+E +L R L R
Sbjct: 169 EEGQRSKDQERML-RKLQR 186
>ZFIN|ZDB-GENE-050522-499 [details] [associations]
symbol:smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-499 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000729 HOGENOM:HOG000172362
GO:GO:0035861 GeneTree:ENSGT00630000089890 OMA:KEERYMA
HOVERGEN:HBG055804 EMBL:AL807792 IPI:IPI00492619 UniGene:Dr.3950
ProteinModelPortal:B0R061 Ensembl:ENSDART00000091409
ArrayExpress:B0R061 Bgee:B0R061 Uniprot:B0R061
Length = 972
Score = 277 (102.6 bits), Expect = 8.6e-40, Sum P(2) = 8.6e-40
Identities = 71/170 (41%), Positives = 102/170 (60%)
Query: 262 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 321
L+ GK +L + L KL+ G RV+LFS T +LDI+E L+ Y R+DG+T + +
Sbjct: 796 LILDSGKFALLTKTLAKLKEKGDRVVLFSQFTMMLDIVEILLKHLDHQYVRLDGSTPMAE 855
Query: 322 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 381
R I +N++ + F+FLLS RA G+G+NL SA+TVI++D D NP N++QA R HR+G
Sbjct: 856 RIGLIDKYNTNP-EIFVFLLSTRAGGQGINLASANTVILHDIDCNPFNDKQAEDRCHRMG 914
Query: 382 QKREVKVIYMEAVVDKISSHQKED-ELRSGGT-VDLEDDLAGKDRYIGSI 429
Q R V+VI + IS ED LR G + LE D+ + G+I
Sbjct: 915 QTRTVQVIKL------ISKDSIEDCMLRVGQEKLKLEQDMTTDEGEDGAI 958
Score = 241 (89.9 bits), Expect = 8.6e-40, Sum P(2) = 8.6e-40
Identities = 69/220 (31%), Positives = 106/220 (48%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAAL-KFNVLVTTYEFIM---YDRSKLSK 59
W EL W PS+ + Y G+ + R L + L FN++V+TY + +DRS K
Sbjct: 511 WVRELGLWCPSLKVLIYYGSVEDRKYLRQDILTGLIDFNIIVSTYNLTIGNDHDRSLFRK 570
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
+ KY + DE +K+ S+ R L + RLLLTGTPLQN+ P +F
Sbjct: 571 LKLKYAVFDEGHMLKNMNSLRYRHLMTINAEHRLLLTGTPLQNNLLELMSLLNFIMPSMF 630
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ + S+ F T +++++ K I RL I++PF+LRR +V L
Sbjct: 631 SSSTS---QISKMFS----TRSSEEE-SSFHKDRIAQARL--IMKPFILRRVKSEVLKEL 680
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRV 219
PPK+ + C MS Q +YD + L+ P +KR +
Sbjct: 681 PPKMEKIEMCPMSDAQHKLYDILFKR--LKKTPNGDKREL 718
Score = 112 (44.5 bits), Expect = 2.8e-26, Sum P(2) = 2.8e-26
Identities = 33/94 (35%), Positives = 47/94 (50%)
Query: 162 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK 221
I++PF+LRR +V LPPK+ + C MS Q +YD + L+ P +KR
Sbjct: 663 IMKPFILRRVKSEVLKELPPKMEKIEMCPMSDAQHKLYDILFKR--LKKTPNGDKRE--- 717
Query: 222 NPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS 255
L N M+LRK NHPLL+ Y++
Sbjct: 718 -----------LCNVMMQLRKMANHPLLHRQYYT 740
Score = 39 (18.8 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 130 SQPFQKEGPTH-NADDDWLETEKKVIIIHRLHQILEPF 166
S+ KE PTH +AD ++ + +V+ LH + +
Sbjct: 748 SKAMLKE-PTHYDADPALIQEDMEVMSDFELHNLCREY 784
>CGD|CAL0002614 [details] [associations]
symbol:orf19.4502 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045898 "regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0002614 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 InterPro:IPR022707 Pfam:PF12054 EMBL:AACQ01000142
EMBL:AACQ01000141 RefSeq:XP_712896.1 RefSeq:XP_712928.1
ProteinModelPortal:Q59TC9 STRING:Q59TC9 GeneID:3645462
GeneID:3645500 KEGG:cal:CaO19.11978 KEGG:cal:CaO19.4502
Uniprot:Q59TC9
Length = 1915
Score = 309 (113.8 bits), Expect = 8.6e-40, Sum P(2) = 8.6e-40
Identities = 78/266 (29%), Positives = 135/266 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W+ E++++ P + + Y G+ R L Q A +V+VT+Y+ D L+K D+
Sbjct: 1377 WEQEINQYAPFMKVLVYAGSPSIRIPLRGQIPDA---DVVVTSYDVCRNDVESLTKHDYN 1433
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y ++DE +K+ S L++ + R + + RL+L+GTP+QN+ P K
Sbjct: 1434 YCVLDEGHIIKNASSKLSKSVKRVKAEHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEK 1493
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
FH+ F++P + N+ E E + + LH+ + PFMLRR EDV LPPK+
Sbjct: 1494 VFHEKFAKPI---AASRNSKTSSKEQEAGALAMESLHKQVLPFMLRRLKEDVLSDLPPKI 1550
Query: 184 SIVLRCRMSAIQSAIY-DWIKATG-TLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 241
C +S +Q +Y D+ K T++ D + ++ K ++QA Y +R
Sbjct: 1551 IQDYYCELSDLQKKLYKDFAKTQKETIKTDVQGSEKE-GKTHVFQALQY---------MR 1600
Query: 242 KTCNHPLL----NYPYFSDLSKDFLV 263
K CNHP L +P ++++++ FL+
Sbjct: 1601 KLCNHPALVMSEQHPKYAEINQ-FLI 1625
Score = 216 (81.1 bits), Expect = 8.6e-40, Sum P(2) = 8.6e-40
Identities = 52/126 (41%), Positives = 73/126 (57%)
Query: 284 HRVLLFSTMTKLLDILEEYLQWRQL---VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 340
HR L+F + +LDI+E L + L + R+DG+T DR+S + FN D + L
Sbjct: 1687 HRALIFCQLKDMLDIVENELLRKYLPSVTFMRLDGSTDPRDRQSIVRKFNE-DPSIDVLL 1745
Query: 341 LSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYMEAVVDK 397
L+ + G GLNL ADTVI + D NP N+ QA+ RAHR+GQK+ V V I + + +K
Sbjct: 1746 LTTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRLITKDTLEEK 1805
Query: 398 ISSHQK 403
I QK
Sbjct: 1806 IMGLQK 1811
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 470 (170.5 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
Identities = 119/310 (38%), Positives = 174/310 (56%)
Query: 140 HNADD--DWLETEKKV---IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAI 194
++ADD W +T+ + ++ RLH +L+PF+LRR +VE SLPPK + + +S +
Sbjct: 287 NSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKAEVEKSLPPKKEVKIYLGLSKM 346
Query: 195 QSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL----- 249
Q +W +D + ++ K L N M+LRK CNHP L
Sbjct: 347 QR---EWYTRILMKDIDILNSAGKMDK---------MRLLNILMQLRKCCNHPYLFDGAE 394
Query: 250 -NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 308
PY +D L+ + GK+ +LD++L KL+ G RVLLFS MT+LLDILE+Y WR
Sbjct: 395 PGPPYTTDTH---LITNSGKMLVLDKLLAKLREQGSRVLLFSQMTRLLDILEDYCMWRGY 451
Query: 309 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPK 368
Y R+DG T E+RE AI FN+ +S FIF+LS RA G G+NL +AD VI+YD D NP+
Sbjct: 452 EYCRLDGQTPHEEREEAIDTFNAPNSSKFIFMLSTRAGGLGINLATADVVILYDSDWNPQ 511
Query: 369 NEEQAVARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--RSGGTVDLEDDL 419
+ QA+ RAHRIGQK+ V+V + E +V++ + D + + G +D + +
Sbjct: 512 VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNK 571
Query: 420 AGKDRYIGSI 429
KD + I
Sbjct: 572 LAKDEMLQMI 581
Score = 306 (112.8 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 66/196 (33%), Positives = 108/196 (55%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W +E +W+PS+ + +G KD R+ + +++V VT+YE ++ ++S K +W+
Sbjct: 171 WMNEFKRWVPSLRAVCLIGDKDARAAFIRDVMMPGEWDVCVTSYEMVIKEKSVFKKFNWR 230
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+ P+VF++
Sbjct: 231 YLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAD 290
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F WF T N D +K ++ RLH +L+PF+LRR +VE SLPPK
Sbjct: 291 DFDSWFD--------TKNCLGD----QK---LVERLHAVLKPFLLRRIKAEVEKSLPPKK 335
Query: 184 SIVLRCRMSAIQSAIY 199
+ + +S +Q Y
Sbjct: 336 EVKIYLGLSKMQREWY 351
Score = 44 (20.5 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 453 RFDQRTTHEERRMTLET 469
R D +T HEER ++T
Sbjct: 455 RLDGQTPHEEREEAIDT 471
Score = 41 (19.5 bits), Expect = 3.7e-21, Sum P(3) = 3.7e-21
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 266 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 297
C +L ++RI+ +++R R+ ++ K LD
Sbjct: 818 CNELQDIERIMAQIERGEARIQRRISIKKALD 849
Score = 39 (18.8 bits), Expect = 1.0e-39, Sum P(2) = 1.0e-39
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 879 QRRCKNVISKLQRRIEKEGHQI 900
QRRC +IS IEKE +I
Sbjct: 925 QRRCNTLISL----IEKENMEI 942
>RGD|2323132 [details] [associations]
symbol:LOC100359912 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin a5-like" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:2323132 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00390811
Ensembl:ENSRNOT00000031851 Uniprot:F1M7H3
Length = 760
Score = 453 (164.5 bits), Expect = 1.1e-39, Sum P(2) = 1.1e-39
Identities = 120/333 (36%), Positives = 180/333 (54%)
Query: 140 HNADD--DWLET-----EKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMS 192
++ADD W +T +KK ++ RLH +L PF+LRR DVE SLPPK + + +S
Sbjct: 81 NSADDFDSWFDTNNCLGDKK--LVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLS 138
Query: 193 AIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL--- 249
+Q +W +D + ++ K L N M+LRK CNHP L
Sbjct: 139 KMQR---EWYTRILMKDIDILNSAGKMDK---------MRLLNILMQLRKCCNHPYLFDG 186
Query: 250 ---NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR 306
PY +D+ LV + GK+ +LD++L KL+ G RVL+FS MT++LDILE+Y WR
Sbjct: 187 AEPGPPYTTDMH---LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWR 243
Query: 307 QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPN 366
Y R+DG T ++R+ +I +N +S F+F+LS RA G G+NL +AD VI+YD D N
Sbjct: 244 NYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWN 303
Query: 367 PKNEEQAVARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--RSGGTVDLED 417
P+ + QA+ RAHRIGQ + V+V E +V++ + D + + G VD
Sbjct: 304 PQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNL 363
Query: 418 DLAGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 450
+ GKD + I + + ++ DE I+
Sbjct: 364 NKIGKDEMLQMIRHGATHVFASKESEITDEDID 396
Score = 258 (95.9 bits), Expect = 5.3e-18, Sum P(2) = 5.3e-18
Identities = 59/160 (36%), Positives = 90/160 (56%)
Query: 40 FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTP 99
++V VT+YE ++ ++S K +W+Y++IDEA R+K+ +S L+ + ++ RLLLTGTP
Sbjct: 1 WDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTP 60
Query: 100 LQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 159
LQN+ P+VF++ F WF T+N D KK ++ RL
Sbjct: 61 LQNNLHELWSLLNFLLPDVFNSADDFDSWFD--------TNNCLGD-----KK--LVERL 105
Query: 160 HQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 199
H +L PF+LRR DVE SLPPK + + +S +Q Y
Sbjct: 106 HMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWY 145
Score = 49 (22.3 bits), Expect = 1.1e-39, Sum P(2) = 1.1e-39
Identities = 25/119 (21%), Positives = 55/119 (46%)
Query: 462 ERRMTLETLLHDE-ERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRY 520
+RR++++ L + RY+ H + N+ +E+E M + G+ +E Y
Sbjct: 633 QRRISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEENRFLICMLHKLGFDKENV-Y 691
Query: 521 DQVPKWLRASTKE------VNATIANLSKKPSK--NILFGSNIGVDSGEIETERKRGPK 571
D++ + +R S + + T L ++ + ++ N+ ++ E ++KRGPK
Sbjct: 692 DELRQCIRNSPQFRFDWFLKSRTAMALQRRCNTLITLIERENMELEEKEKAEKKKRGPK 750
Score = 40 (19.1 bits), Expect = 2.0e-16, Sum P(3) = 2.0e-16
Identities = 26/116 (22%), Positives = 48/116 (41%)
Query: 368 KNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIG 427
+N+ + +AR G+ E + Y ++ + Q +++ + +E A R I
Sbjct: 583 RNDIENIAREVE-GKTPEEVIEYSAVFWERCNELQDIEKIMA----QIERGEARIQRRI- 636
Query: 428 SIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHD 483
SI+ + I +YK I+ G + EE L +LH +E V+D
Sbjct: 637 SIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEENRFLICMLHKLGFDKENVYD 692
Score = 39 (18.8 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 878 IQRRCKNVISKLQR 891
+QRRC +I+ ++R
Sbjct: 718 LQRRCNTLITLIER 731
>WB|WBGene00010845 [details] [associations]
symbol:M03C11.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0003677 GO:GO:0006281 GO:GO:0016568 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 EMBL:Z49128 EMBL:AL021171 PIR:T23046
RefSeq:NP_499301.2 ProteinModelPortal:G5EDG2 SMR:G5EDG2
EnsemblMetazoa:M03C11.8 GeneID:176462 KEGG:cel:CELE_M03C11.8
WormBase:M03C11.8 OMA:KEERYMA NextBio:892680 Uniprot:G5EDG2
Length = 989
Score = 285 (105.4 bits), Expect = 1.4e-39, Sum P(2) = 1.4e-39
Identities = 63/132 (47%), Positives = 88/132 (66%)
Query: 257 LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT 316
L++ +KS GK LD +L ++Q+ G +VL+FS T +LDILE YL R Y+R+DG
Sbjct: 744 LNEQLALKS-GKCEQLDVMLPEIQKKGDKVLIFSQFTSMLDILEVYLNIRGYSYKRLDGQ 802
Query: 317 TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVAR 376
T + DR+ I +FN D F+FLLS RA G G+NL SA+ +II+D D NP N++QA R
Sbjct: 803 TPVLDRQEMINEFNL-SKDLFVFLLSTRAGGLGINLTSANHIIIHDIDFNPYNDKQAEDR 861
Query: 377 AHRIGQKREVKV 388
HR+GQ++ V V
Sbjct: 862 CHRMGQEKPVHV 873
Score = 231 (86.4 bits), Expect = 1.4e-39, Sum P(2) = 1.4e-39
Identities = 62/202 (30%), Positives = 96/202 (47%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALK--FNVLVTTYEFIMY--DRSKLSK 59
W E HKW PS+ + Y G++D+R L V K +V++TTY + D K K
Sbjct: 457 WIGEFHKWCPSIQLLTYYGSQDERKHL-RHRVKKQKDHIDVILTTYNMVTSKSDDKKFFK 515
Query: 60 -VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 118
Y+I DE +K+ +S R L + + ++++LLTGTPLQN+ +V
Sbjct: 516 NFSLNYVIYDEGHMLKNCDSERYRGLMKVKGKKKILLTGTPLQNNLIELISLMYFVLSKV 575
Query: 119 FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 178
F+ Q F++ GP + + L + + I IL+P++LRR V GS
Sbjct: 576 FNKYCEDITHLLQHFKQLGPALDTKNKALYQQDR---IEEAKAILQPYILRRLKNQVLGS 632
Query: 179 LPPKVSIVLRCRMSAIQSAIYD 200
LP K ++ M Q +YD
Sbjct: 633 LPSKSEQIIEVEMKKPQKQLYD 654
Score = 58 (25.5 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 21/97 (21%), Positives = 44/97 (45%)
Query: 171 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKN---PIYQA 227
R+E+ + L P +LR + + ++ K+ + V+ + ++++ N + Q+
Sbjct: 609 RIEEAKAILQP---YILRRLKNQVLGSLPS--KSEQIIEVEMKKPQKQLYDNIVEALQQS 663
Query: 228 KVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVK 264
+ M LR+ NHPLL ++D D + K
Sbjct: 664 EESGDSYGSLMRLRQAANHPLLRRSEYTDQKLDKIAK 700
Score = 52 (23.4 bits), Expect = 7.6e-21, Sum P(2) = 7.6e-21
Identities = 24/95 (25%), Positives = 47/95 (49%)
Query: 135 KEGPTHNADD--DWLETEKKVIIIH--RLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCR 190
K G T N + ++ KK ++ R++ + F+L R ++ G++ K+ V R
Sbjct: 282 KRGETKNQKECREFFNKAKKEDLLQQARINDKIADFVLANRPFEIYGAMVAKMKGVTR-G 340
Query: 191 MSAIQSAIYDWIKATGTL-RV--DPEDEKRRVQKN 222
+AI+ A ++++ G L R+ D +D V K+
Sbjct: 341 TNAIE-AYMEFLEKRGILSRILDDCKDHAHTVTKD 374
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 470 (170.5 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 125/348 (35%), Positives = 188/348 (54%)
Query: 140 HNADD--DWLETEKKV---IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAI 194
++ADD W +T+ + ++ RLH +L+PF+LRR DVE SLPPK I + +S +
Sbjct: 367 NSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKM 426
Query: 195 QSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL----- 249
Q +W +D + ++ K L N M+LRK CNHP L
Sbjct: 427 QR---EWYTKILMKDIDVLNSSGKMDK---------MRLLNILMQLRKCCNHPYLFDGAE 474
Query: 250 -NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 308
PY +D + +V + GK+ LD++L +++ G RVL+FS MT+LLDILE+Y WR
Sbjct: 475 PGPPYTTD---EHIVGNSGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGY 531
Query: 309 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPK 368
Y R+DG T E+RE AI FN+ +S FIF+LS RA G G+NL SAD VI+YD D NP+
Sbjct: 532 EYSRLDGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQ 591
Query: 369 NEEQAVARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--RSGGTVDLEDDL 419
+ QA+ RAHRIGQK+ V+V + E +V++ + D + + G +D + +
Sbjct: 592 VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNK 651
Query: 420 AGKDRYIGSIEGLIRNNIQQYKIDMADE--VINAGRFDQRTTHEERRM 465
K+ + I + + ++ DE V R +++T RM
Sbjct: 652 LAKEEMLQMIRHGATHVFACKESELTDEDIVTILERGEKKTAEMNERM 699
Score = 320 (117.7 bits), Expect = 2.5e-22, Sum P(3) = 2.5e-22
Identities = 71/196 (36%), Positives = 109/196 (55%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W +E +W+PS+ I +VG KD R+ E+ +++V VT+YE ++ ++S K W+
Sbjct: 251 WMNEFKRWVPSLRVICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWR 310
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+ P+VF++
Sbjct: 311 YLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAD 370
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F WF T N D +K ++ RLH +L+PF+LRR DVE SLPPK
Sbjct: 371 DFDSWFD--------TKNCLGD----QK---LVERLHAVLKPFLLRRIKTDVEKSLPPKK 415
Query: 184 SIVLRCRMSAIQSAIY 199
I + +S +Q Y
Sbjct: 416 EIKIYLGLSKMQREWY 431
Score = 39 (18.8 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 879 QRRCKNVISKLQRRIEKEGHQI 900
QRRC +IS IEKE +I
Sbjct: 1005 QRRCNTLISL----IEKENMEI 1022
Score = 39 (18.8 bits), Expect = 2.5e-22, Sum P(3) = 2.5e-22
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 453 RFDQRTTHEERRMTLE 468
R D +T HEER ++
Sbjct: 535 RLDGQTPHEEREEAID 550
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 459 (166.6 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 124/342 (36%), Positives = 182/342 (53%)
Query: 144 DDWLETEK---KVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYD 200
D W +T ++ RLH +L PF+LRR DVE SL PK I + +S +Q +
Sbjct: 349 DAWFDTNNCLGDTKLVERLHTVLRPFLLRRIKADVEKSLLPKKEIKIYVGLSKMQR---E 405
Query: 201 WIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL------NYPYF 254
W +D + ++ K L N M+LRK CNHP L PY
Sbjct: 406 WYTKILMKDIDILNSAGKMDK---------MRLLNVLMQLRKCCNHPYLFDGAEPGPPYT 456
Query: 255 SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRID 314
+DL LV + GK+ +LD++L KL+ G RVL+FS MT++LDILE+Y WR Y R+D
Sbjct: 457 TDLH---LVVNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYGYCRLD 513
Query: 315 GTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAV 374
G T E+R+ +I FN +S F+F+LS RA G G+NL +AD VIIYD D NP+ + QA+
Sbjct: 514 GQTPHEERQISINAFNEPNSSKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQVDLQAM 573
Query: 375 ARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--RSGGTVDLEDDLAGKDRY 425
RAHRIGQK++V+V E +V++ + D + + G VD + GKD
Sbjct: 574 DRAHRIGQKKQVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDPSMNKLGKDEM 633
Query: 426 IGSIEGLIRNNIQQYKIDMADEVINA--GRFDQRTTHEERRM 465
+ I + + ++ DE I+ R +++T + +M
Sbjct: 634 LSIIRHGATHVFASKESEITDEDIDGILERGERKTMEMKEKM 675
Score = 299 (110.3 bits), Expect = 1.6e-21, Sum P(3) = 1.6e-21
Identities = 65/196 (33%), Positives = 109/196 (55%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W +E +W+PS+ + +G +++R+ + +++V VT+YE ++ +R+ K +W+
Sbjct: 227 WMNEFKRWVPSLKAVCLIGDREERTAFIRDTLLPGEWDVCVTSYEMLIIERAVFKKFNWR 286
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+ P+VF++ +
Sbjct: 287 YLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSE 346
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F WF T+N D T+ ++ RLH +L PF+LRR DVE SL PK
Sbjct: 347 DFDAWFD--------TNNCLGD---TK----LVERLHTVLRPFLLRRIKADVEKSLLPKK 391
Query: 184 SIVLRCRMSAIQSAIY 199
I + +S +Q Y
Sbjct: 392 EIKIYVGLSKMQREWY 407
Score = 50 (22.7 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 24/119 (20%), Positives = 55/119 (46%)
Query: 462 ERRMTLETLLHDE-ERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRY 520
+RR++++ L + RY+ H + N+ +E+E M + G+ +E Y
Sbjct: 894 QRRISIKKALDSKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESV-Y 952
Query: 521 DQVPKWLRASTKE------VNATIANLSKKPSK--NILFGSNIGVDSGEIETERKRGPK 571
D++ + +R S + + T L ++ + ++ N+ ++ E ++KRGP+
Sbjct: 953 DELRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEREKAEKKKRGPR 1011
Score = 42 (19.8 bits), Expect = 1.6e-21, Sum P(3) = 1.6e-21
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 453 RFDQRTTHEERRMTL 467
R D +T HEER++++
Sbjct: 511 RLDGQTPHEERQISI 525
Score = 39 (18.8 bits), Expect = 2.3e-38, Sum P(2) = 2.3e-38
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 878 IQRRCKNVISKLQR 891
+QRRC +I+ ++R
Sbjct: 979 LQRRCNTLITLIER 992
Score = 38 (18.4 bits), Expect = 5.6e-20, Sum P(3) = 5.6e-20
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 428 SIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHD 483
SI+ + + I +YK I+ G + EE L +LH +E+V+D
Sbjct: 898 SIKKALDSKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKESVYD 953
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 478 (173.3 bits), Expect = 1.7e-39, Sum P(3) = 1.7e-39
Identities = 126/348 (36%), Positives = 188/348 (54%)
Query: 140 HNADD--DWLETEKKV---IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAI 194
++ADD W +T+ + ++ RLH +L+PF+LRR DVE SLPPK I + +S +
Sbjct: 366 NSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKM 425
Query: 195 QSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL----- 249
Q +W +D + ++ K L N M+LRK CNHP L
Sbjct: 426 QR---EWYTKILMKDIDVLNSAGKMDK---------MRLLNILMQLRKCCNHPYLFDGAE 473
Query: 250 -NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 308
PY +D + +V + GK+ +LD++L KL+ G RVL+FS MT+LLDILE+Y WR
Sbjct: 474 PGPPYTTD---EHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGY 530
Query: 309 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPK 368
Y R+DG T E+RE AI FN +S FIF+LS RA G G+NL SAD VI+YD D NP+
Sbjct: 531 EYCRLDGQTPHEEREEAIEAFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQ 590
Query: 369 NEEQAVARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--RSGGTVDLEDDL 419
+ QA+ RAHRIGQK+ V+V + E +V++ + D + + G +D + +
Sbjct: 591 VDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNK 650
Query: 420 AGKDRYIGSIEGLIRNNIQQYKIDMADEVINA--GRFDQRTTHEERRM 465
K+ + I + + ++ DE I R +++T R+
Sbjct: 651 MAKEEMLQMIRHGATHVFASKESELTDEDITTLLERGERKTAEMNERL 698
Score = 321 (118.1 bits), Expect = 4.7e-22, Sum P(4) = 4.7e-22
Identities = 71/196 (36%), Positives = 109/196 (55%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W +E +W+PS+ I +VG KD R+ E+ +++V VT+YE ++ ++S K W+
Sbjct: 250 WMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWR 309
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+ P+VF++
Sbjct: 310 YLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAD 369
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F WF T N D +K ++ RLH +L+PF+LRR DVE SLPPK
Sbjct: 370 DFDSWFD--------TKNCLGD----QK---LVERLHAVLKPFLLRRIKTDVEKSLPPKK 414
Query: 184 SIVLRCRMSAIQSAIY 199
I + +S +Q Y
Sbjct: 415 EIKIYLGLSKMQREWY 430
Score = 42 (19.8 bits), Expect = 4.7e-22, Sum P(4) = 4.7e-22
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 453 RFDQRTTHEERRMTLE 468
R D +T HEER +E
Sbjct: 534 RLDGQTPHEEREEAIE 549
Score = 39 (18.8 bits), Expect = 1.7e-39, Sum P(3) = 1.7e-39
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 879 QRRCKNVISKLQRRIEKEGHQI 900
QRRC +IS IEKE +I
Sbjct: 1004 QRRCNTLISL----IEKENMEI 1021
Score = 37 (18.1 bits), Expect = 1.7e-39, Sum P(3) = 1.7e-39
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 756 VERPEERSCT-DTPLHR-GDSSLLPFQMDNK 784
+ER E ++ + L + G+SSL F+MD +
Sbjct: 684 LERGERKTAEMNERLQKMGESSLRNFRMDTE 714
>FB|FBgn0023395 [details] [associations]
symbol:Chd3 "Chd3" species:7227 "Drosophila melanogaster"
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS;NAS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:AE014296 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0006333
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 GeneTree:ENSGT00560000076896
InterPro:IPR009463 Pfam:PF06465 EMBL:AY071503 EMBL:AF007780
RefSeq:NP_649111.1 ProteinModelPortal:O16102 SMR:O16102
DIP:DIP-21327N MINT:MINT-1651376 STRING:O16102 PaxDb:O16102
EnsemblMetazoa:FBtr0074998 GeneID:40111 KEGG:dme:Dmel_CG9594
UCSC:CG9594-RA CTD:1107 FlyBase:FBgn0023395 InParanoid:O16102
OMA:IKWRDLA OrthoDB:EOG4JH9WN PhylomeDB:O16102 GenomeRNAi:40111
NextBio:817050 Bgee:O16102 GermOnline:CG9594 Uniprot:O16102
Length = 892
Score = 454 (164.9 bits), Expect = 2.3e-39, P = 2.3e-39
Identities = 133/402 (33%), Positives = 205/402 (50%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
++ W+ EL W P + C+ YVG K R+ + E++ + Y + +
Sbjct: 328 LTNWERELELWAPELYCVTYVGGKTARAVIRKHEISFEEVTTKTMRENQTQY-KFNVMLT 386
Query: 61 DWKYIIIDEA-QRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
+++I +D A D +++ + R R + + + P
Sbjct: 387 SYEFISVDAAFLGCIDWAALVVDEAHRLRSNQSKFFR---ILSKYRIGYKLLLTGTPLQN 443
Query: 120 DNRKAFH--DWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG 177
+ + FH ++ S + T A+ + E++V RLH+ILEP MLRR DV
Sbjct: 444 NLEELFHLLNFLSSGKFNDLQTFQAEFTDVSKEEQV---KRLHEILEPHMLRRLKADVLK 500
Query: 178 SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 237
S+PPK ++R +S++Q Y I ++ K QK +V LN
Sbjct: 501 SMPPKSEFIVRVELSSMQKKFYKHILT--------KNFKALNQKGG---GRVCSLLNIM- 548
Query: 238 MELRKTCNHPLLNYPYFSD---LSKD------FLVKSCGKLWILDRILIKLQRTGHRVLL 288
M+LRK CNHP L +P ++ +S L K+ GKL +L ++L +L+ HRVLL
Sbjct: 549 MDLRKCCNHPYL-FPSAAEEATISPSGLYEMSSLTKASGKLDLLSKMLKQLKADNHRVLL 607
Query: 289 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348
FS MTK+L++LE +L+ Y RIDG+ + R+ AI FN S+ F+FLLS RA G
Sbjct: 608 FSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGL 667
Query: 349 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 390
G+NL +ADTVII+D D NP N+ QA +RAHR+GQK++V +IY
Sbjct: 668 GINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKV-MIY 708
>UNIPROTKB|Q9H4L7 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9606 "Homo sapiens" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0009117 "nucleotide metabolic process" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0016363
"nuclear matrix" evidence=NAS] [GO:0051260 "protein
homooligomerization" evidence=NAS] [GO:0000018 "regulation of DNA
recombination" evidence=IEP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0016568 "chromatin
modification" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0000729
"DNA double-strand break processing" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0051304 "chromosome separation" evidence=IMP]
[GO:0070932 "histone H3 deacetylation" evidence=IMP] [GO:0070933
"histone H4 deacetylation" evidence=IMP] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR003892 InterPro:IPR009060
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0045893 GO:GO:0003677
GO:GO:0009117 GO:GO:0051260 GO:GO:0043596 GO:GO:0004386
GO:GO:0016363 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000729 GO:GO:0000018
HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439 GO:GO:0051304
OMA:KNQRGIQ EMBL:AY008271 EMBL:AB032948 EMBL:AK023990 EMBL:AK027490
EMBL:AK301668 EMBL:AC096746 EMBL:BC017953 EMBL:BC045534
EMBL:AL359929 EMBL:AL512768 IPI:IPI00008422 IPI:IPI00220119
RefSeq:NP_001121901.1 RefSeq:NP_001121902.1 RefSeq:NP_001241878.1
RefSeq:NP_064544.2 UniGene:Hs.410406 ProteinModelPortal:Q9H4L7
SMR:Q9H4L7 STRING:Q9H4L7 PhosphoSite:Q9H4L7 DMDM:306526240
PaxDb:Q9H4L7 PRIDE:Q9H4L7 DNASU:56916 Ensembl:ENST00000354268
Ensembl:ENST00000359052 Ensembl:ENST00000457823
Ensembl:ENST00000509418 GeneID:56916 KEGG:hsa:56916 UCSC:uc003htb.4
UCSC:uc003htc.4 CTD:56916 GeneCards:GC04P095128 H-InvDB:HIX0004380
HGNC:HGNC:18398 HPA:HPA016737 MIM:136000 MIM:612761
neXtProt:NX_Q9H4L7 Orphanet:289465 PharmGKB:PA134954731
HOVERGEN:HBG055804 ChiTaRS:SMARCAD1 GenomeRNAi:56916 NextBio:62407
ArrayExpress:Q9H4L7 Bgee:Q9H4L7 CleanEx:HS_SMARCAD1
Genevestigator:Q9H4L7 GermOnline:ENSG00000163104 Uniprot:Q9H4L7
Length = 1026
Score = 290 (107.1 bits), Expect = 2.4e-39, Sum P(2) = 2.4e-39
Identities = 70/174 (40%), Positives = 107/174 (61%)
Query: 251 YPYFSDLSKDF-LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 309
Y + ++ D L+ GK +L IL +L++ G RV+LFS T +LDILE L+ Q
Sbjct: 837 YRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHR 896
Query: 310 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 369
Y R+DG T + +R I +FN+ D D F+FLLS +A G G+NL SA+ VI++D D NP N
Sbjct: 897 YLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 955
Query: 370 EEQAVARAHRIGQKREVKVIYM--EAVVDK--ISSHQKEDELRSG-GTVDLEDD 418
++QA R HR+GQ +EV VI + + +++ + +Q++ +L TVD D+
Sbjct: 956 DKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDE 1009
Score = 224 (83.9 bits), Expect = 2.4e-39, Sum P(2) = 2.4e-39
Identities = 60/200 (30%), Positives = 100/200 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRL-FSQEVAALKFNVLVTTYEFIMY---DRSKLSK 59
W E++ W P++ + Y G++++R ++ F+ +NV+VTTY + DRS +
Sbjct: 560 WLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNCAISSSDDRSLFRR 619
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
+ Y I DE +K+ S+ + L RLLLTGTP+QN+ P +F
Sbjct: 620 LKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMF 679
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ + + F + T +AD+ + +++ I H QI++PF+LRR E+V L
Sbjct: 680 SSSTSE---IRRMFSSK--TKSADEQSIYEKER--IAHA-KQIIKPFILRRVKEEVLKQL 731
Query: 180 PPKVSIVLRCRMSAIQSAIY 199
PPK + C MS Q +Y
Sbjct: 732 PPKKDRIELCAMSEKQEQLY 751
Score = 107 (42.7 bits), Expect = 4.4e-27, Sum P(2) = 4.4e-27
Identities = 36/105 (34%), Positives = 52/105 (49%)
Query: 151 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 210
+K I H QI++PF+LRR E+V LPPK + C MS Q +Y G
Sbjct: 704 EKERIAHA-KQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLY-----LGLFN- 756
Query: 211 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS 255
R++K+ I + + N M+LRK NHPLL+ Y++
Sbjct: 757 -------RLKKS-INNLEKNTEMCNVMMQLRKMANHPLLHRQYYT 793
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 460 (167.0 bits), Expect = 2.6e-39, Sum P(2) = 2.6e-39
Identities = 126/343 (36%), Positives = 183/343 (53%)
Query: 144 DDWLET----EKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 199
D W +T ++K ++ RLH +L PF+LRR +VE SLPPK + + +S +Q
Sbjct: 329 DSWFDTNCLGDQK--LVERLHAVLRPFLLRRIKAEVEKSLPPKKEVKIYLGLSKMQR--- 383
Query: 200 DWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL------NYPY 253
+W +D + ++ K L N M+LRK CNHP L PY
Sbjct: 384 EWYTRILMKDIDILNSAGKMDK---------MRLLNILMQLRKCCNHPYLFDGAEPGPPY 434
Query: 254 FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRI 313
+D LV + GK+ LD++L K+Q G RVL+FS MT++LDILE+Y WR Y R+
Sbjct: 435 TTDTH---LVINSGKMVALDKLLPKVQEQGSRVLIFSQMTRVLDILEDYCMWRGFEYCRL 491
Query: 314 DGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQA 373
DG T E RE AI FN+ +S FIF+LS RA G G+NL +AD VI+YD D NP+ + QA
Sbjct: 492 DGNTPHEAREQAIDAFNAPNSSKFIFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQA 551
Query: 374 VARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--RSGGTVDLEDDLAGKDR 424
+ RAHRIGQ++ VKV + E +V++ + D + + G +D ++ L GKD
Sbjct: 552 MDRAHRIGQRKPVKVFRLITDNTVEERIVERAEMKLRLDSIVIQQGRLIDQQNKL-GKDE 610
Query: 425 YIGSIEGLIRNNIQQYKIDMADEVINA--GRFDQRTTHEERRM 465
+ I + ++ DE I+ R ++T RM
Sbjct: 611 MLQMIRHGATHVFASKDSELTDEDIDTILERGAKKTAEMNERM 653
Score = 304 (112.1 bits), Expect = 1.2e-21, Sum P(3) = 1.2e-21
Identities = 64/196 (32%), Positives = 107/196 (54%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W +E +W+P++ + +G KD+R+ + +++V VT+YE ++ ++S K +W+
Sbjct: 207 WMNEFKRWVPTLKAVCLIGNKDERAAFIRDVMMPGEWDVCVTSYEMVIREKSVFKKFNWR 266
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y++IDEA R+K+ +S L+ ++ RLLLTGTPLQN+ P+VF++
Sbjct: 267 YLVIDEAHRIKNEKSKLSEIAREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSAS 326
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F WF D + L +K ++ RLH +L PF+LRR +VE SLPPK
Sbjct: 327 DFDSWF-------------DTNCLGDQK---LVERLHAVLRPFLLRRIKAEVEKSLPPKK 370
Query: 184 SIVLRCRMSAIQSAIY 199
+ + +S +Q Y
Sbjct: 371 EVKIYLGLSKMQREWY 386
Score = 47 (21.6 bits), Expect = 2.6e-39, Sum P(2) = 2.6e-39
Identities = 26/133 (19%), Positives = 61/133 (45%)
Query: 462 ERRMTLETLLHDE-ERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRY 520
+RR++++ L + RY+ H + N+ +E+E M + G+ +E Y
Sbjct: 897 QRRISIKKALDVKIARYKAPFHQLRIQYGTNKGKNYTEEEDRFLICMLHKMGFDKEYV-Y 955
Query: 521 DQVPKWLRASTKE------VNATIANLSKKPSK--NILFGSNIGVDSGEIETERKRGPKG 572
+++ + +R + + + T L ++ + +++ N+ ++ E +++R PKG
Sbjct: 956 EELRQCVRNAPQFRFDWFIKSRTAMELQRRCNTLISLIEKENMEIEEKERAEKKRRTPKG 1015
Query: 573 KKYPNYK-EVDDE 584
+ K EV E
Sbjct: 1016 QSAQKRKAEVSSE 1028
Score = 41 (19.5 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 878 IQRRCKNVISKLQRRIEKEGHQI 900
+QRRC +IS IEKE +I
Sbjct: 982 LQRRCNTLISL----IEKENMEI 1000
Score = 41 (19.5 bits), Expect = 1.2e-21, Sum P(3) = 1.2e-21
Identities = 8/33 (24%), Positives = 20/33 (60%)
Query: 266 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDI 298
C +L +++I+ +++R R+ ++ K LD+
Sbjct: 876 CNELQDIEKIMAQIERGEARIQRRISIKKALDV 908
>UNIPROTKB|E2RG62 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070933 "histone H4 deacetylation"
evidence=IEA] [GO:0070932 "histone H3 deacetylation" evidence=IEA]
[GO:0051304 "chromosome separation" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 EMBL:AAEX03016768
EMBL:AAEX03016769 Ensembl:ENSCAFT00000015951 Uniprot:E2RG62
Length = 1026
Score = 290 (107.1 bits), Expect = 3.1e-39, Sum P(2) = 3.1e-39
Identities = 70/174 (40%), Positives = 107/174 (61%)
Query: 251 YPYFSDLSKDF-LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 309
Y + ++ D L+ GK +L IL +L++ G RV+LFS T +LDILE L+ Q
Sbjct: 837 YRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHR 896
Query: 310 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 369
Y R+DG T + +R I +FN+ D D F+FLLS +A G G+NL SA+ VI++D D NP N
Sbjct: 897 YLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 955
Query: 370 EEQAVARAHRIGQKREVKVIYM--EAVVDK--ISSHQKEDELRSG-GTVDLEDD 418
++QA R HR+GQ +EV VI + + +++ + +Q++ +L TVD D+
Sbjct: 956 DKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDE 1009
Score = 223 (83.6 bits), Expect = 3.1e-39, Sum P(2) = 3.1e-39
Identities = 59/200 (29%), Positives = 101/200 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRL-FSQEVAALKFNVLVTTYEFIMY---DRSKLSK 59
W E++ W P++ + Y G++++R ++ ++ ++NV+VTTY + DRS +
Sbjct: 560 WLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYNCAISSSDDRSLFRR 619
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
+ Y I DE +K+ S+ + L RLLLTGTP+QN+ P +F
Sbjct: 620 LKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMF 679
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ + + F + T +AD+ + +++ I H QI++PF+LRR E+V L
Sbjct: 680 SSSTSE---IRRMFSSK--TKSADEQSIYEKER--IAHA-KQIIKPFILRRVKEEVLKQL 731
Query: 180 PPKVSIVLRCRMSAIQSAIY 199
PPK + C MS Q +Y
Sbjct: 732 PPKKDQIELCAMSEKQEQLY 751
Score = 107 (42.7 bits), Expect = 4.4e-27, Sum P(2) = 4.4e-27
Identities = 36/105 (34%), Positives = 52/105 (49%)
Query: 151 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 210
+K I H QI++PF+LRR E+V LPPK + C MS Q +Y G
Sbjct: 704 EKERIAHA-KQIIKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLY-----LGLFN- 756
Query: 211 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS 255
R++K+ I + + N M+LRK NHPLL+ Y++
Sbjct: 757 -------RLKKS-INNIEKSTEMCNVMMQLRKMANHPLLHRQYYT 793
>UNIPROTKB|J9NX47 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
EMBL:AAEX03016768 EMBL:AAEX03016769 Ensembl:ENSCAFT00000044961
Uniprot:J9NX47
Length = 1026
Score = 290 (107.1 bits), Expect = 3.1e-39, Sum P(2) = 3.1e-39
Identities = 70/174 (40%), Positives = 107/174 (61%)
Query: 251 YPYFSDLSKDF-LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 309
Y + ++ D L+ GK +L IL +L++ G RV+LFS T +LDILE L+ Q
Sbjct: 837 YRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHR 896
Query: 310 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 369
Y R+DG T + +R I +FN+ D D F+FLLS +A G G+NL SA+ VI++D D NP N
Sbjct: 897 YLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 955
Query: 370 EEQAVARAHRIGQKREVKVIYM--EAVVDK--ISSHQKEDELRSG-GTVDLEDD 418
++QA R HR+GQ +EV VI + + +++ + +Q++ +L TVD D+
Sbjct: 956 DKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDE 1009
Score = 223 (83.6 bits), Expect = 3.1e-39, Sum P(2) = 3.1e-39
Identities = 59/200 (29%), Positives = 101/200 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRL-FSQEVAALKFNVLVTTYEFIMY---DRSKLSK 59
W E++ W P++ + Y G++++R ++ ++ ++NV+VTTY + DRS +
Sbjct: 560 WLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYNCAISSSDDRSLFRR 619
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
+ Y I DE +K+ S+ + L RLLLTGTP+QN+ P +F
Sbjct: 620 LKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMF 679
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ + + F + T +AD+ + +++ I H QI++PF+LRR E+V L
Sbjct: 680 SSSTSE---IRRMFSSK--TKSADEQSIYEKER--IAHA-KQIIKPFILRRVKEEVLKQL 731
Query: 180 PPKVSIVLRCRMSAIQSAIY 199
PPK + C MS Q +Y
Sbjct: 732 PPKKDQIELCAMSEKQEQLY 751
Score = 107 (42.7 bits), Expect = 4.4e-27, Sum P(2) = 4.4e-27
Identities = 36/105 (34%), Positives = 52/105 (49%)
Query: 151 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 210
+K I H QI++PF+LRR E+V LPPK + C MS Q +Y G
Sbjct: 704 EKERIAHA-KQIIKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLY-----LGLFN- 756
Query: 211 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS 255
R++K+ I + + N M+LRK NHPLL+ Y++
Sbjct: 757 -------RLKKS-INNIEKSTEMCNVMMQLRKMANHPLLHRQYYT 793
>UNIPROTKB|J9PA79 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
OMA:KNQRGIQ EMBL:AAEX03016768 EMBL:AAEX03016769
Ensembl:ENSCAFT00000043847 Uniprot:J9PA79
Length = 1026
Score = 290 (107.1 bits), Expect = 3.1e-39, Sum P(2) = 3.1e-39
Identities = 70/174 (40%), Positives = 107/174 (61%)
Query: 251 YPYFSDLSKDF-LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 309
Y + ++ D L+ GK +L IL +L++ G RV+LFS T +LDILE L+ Q
Sbjct: 837 YRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHR 896
Query: 310 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 369
Y R+DG T + +R I +FN+ D D F+FLLS +A G G+NL SA+ VI++D D NP N
Sbjct: 897 YLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 955
Query: 370 EEQAVARAHRIGQKREVKVIYM--EAVVDK--ISSHQKEDELRSG-GTVDLEDD 418
++QA R HR+GQ +EV VI + + +++ + +Q++ +L TVD D+
Sbjct: 956 DKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEGDE 1009
Score = 223 (83.6 bits), Expect = 3.1e-39, Sum P(2) = 3.1e-39
Identities = 59/200 (29%), Positives = 101/200 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRL-FSQEVAALKFNVLVTTYEFIMY---DRSKLSK 59
W E++ W P++ + Y G++++R ++ ++ ++NV+VTTY + DRS +
Sbjct: 560 WLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYNCAISSSDDRSLFRR 619
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
+ Y I DE +K+ S+ + L RLLLTGTP+QN+ P +F
Sbjct: 620 LKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMF 679
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ + + F + T +AD+ + +++ I H QI++PF+LRR E+V L
Sbjct: 680 SSSTSE---IRRMFSSK--TKSADEQSIYEKER--IAHA-KQIIKPFILRRVKEEVLKQL 731
Query: 180 PPKVSIVLRCRMSAIQSAIY 199
PPK + C MS Q +Y
Sbjct: 732 PPKKDQIELCAMSEKQEQLY 751
Score = 107 (42.7 bits), Expect = 4.4e-27, Sum P(2) = 4.4e-27
Identities = 36/105 (34%), Positives = 52/105 (49%)
Query: 151 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 210
+K I H QI++PF+LRR E+V LPPK + C MS Q +Y G
Sbjct: 704 EKERIAHA-KQIIKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLY-----LGLFN- 756
Query: 211 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS 255
R++K+ I + + N M+LRK NHPLL+ Y++
Sbjct: 757 -------RLKKS-INNIEKSTEMCNVMMQLRKMANHPLLHRQYYT 793
>UNIPROTKB|F1RWW3 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070933 "histone H4 deacetylation" evidence=IEA]
[GO:0070932 "histone H3 deacetylation" evidence=IEA] [GO:0051304
"chromosome separation" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
EMBL:CU951443 Ensembl:ENSSSCT00000010066 Uniprot:F1RWW3
Length = 1029
Score = 289 (106.8 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 64/140 (45%), Positives = 90/140 (64%)
Query: 251 YPYFSDLSKDF-LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 309
Y + ++ D L+ GK +L IL +L++ G RV+LFS T +LDILE L+ Q
Sbjct: 840 YRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHR 899
Query: 310 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 369
Y R+DG T + +R I +FN+ D D F+FLLS +A G G+NL SA+ VI++D D NP N
Sbjct: 900 YLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 958
Query: 370 EEQAVARAHRIGQKREVKVI 389
++QA R HR+GQ +EV VI
Sbjct: 959 DKQAEDRCHRVGQTKEVLVI 978
Score = 223 (83.6 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
Identities = 59/200 (29%), Positives = 101/200 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRL-FSQEVAALKFNVLVTTYEFIMY---DRSKLSK 59
W E++ W P++ + Y G++++R ++ ++ ++NV+VTTY + DRS +
Sbjct: 563 WLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYNVIVTTYNCAISSSDDRSLFRR 622
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
+ Y I DE +K+ S+ + L RLLLTGTP+QN+ P +F
Sbjct: 623 LKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMF 682
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ + + F + T +AD+ + +++ I H QI++PF+LRR E+V L
Sbjct: 683 SSSTSE---IRRMFSSK--TKSADEQSIYEKER--IAHA-KQIIKPFILRRVKEEVLKQL 734
Query: 180 PPKVSIVLRCRMSAIQSAIY 199
PPK + C MS Q +Y
Sbjct: 735 PPKKDQIELCAMSEKQEQLY 754
Score = 107 (42.7 bits), Expect = 5.7e-27, Sum P(2) = 5.7e-27
Identities = 36/105 (34%), Positives = 52/105 (49%)
Query: 151 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 210
+K I H QI++PF+LRR E+V LPPK + C MS Q +Y G
Sbjct: 707 EKERIAHA-KQIIKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLY-----LGLFN- 759
Query: 211 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS 255
R++K+ I + + N M+LRK NHPLL+ Y++
Sbjct: 760 -------RLKKS-INNMEKNTEMCNVMMQLRKMANHPLLHRQYYT 796
>UNIPROTKB|E1B7X9 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9913 "Bos taurus" [GO:0035861 "site of
double-strand break" evidence=ISS] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISS] [GO:0000729 "DNA double-strand
break processing" evidence=ISS] [GO:0070933 "histone H4
deacetylation" evidence=ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0051304 "chromosome separation"
evidence=ISS] [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000792 GO:GO:0070932 GO:GO:0070933 GO:GO:0000729
GO:GO:0000018 GO:GO:0035861 GeneTree:ENSGT00630000089890
GO:GO:0051304 EMBL:DAAA02016925 EMBL:DAAA02016926 IPI:IPI00826348
UniGene:Bt.77636 Ensembl:ENSBTAT00000047936 OMA:KNQRGIQ
Uniprot:E1B7X9
Length = 1028
Score = 290 (107.1 bits), Expect = 5.0e-39, Sum P(2) = 5.0e-39
Identities = 70/174 (40%), Positives = 107/174 (61%)
Query: 251 YPYFSDLSKDF-LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 309
Y + ++ D L+ GK +L IL +L++ G RV+LFS T +LDILE L+ Q
Sbjct: 839 YRHINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHR 898
Query: 310 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 369
Y R+DG T + +R I +FN+ D D F+FLLS +A G G+NL SA+ VI++D D NP N
Sbjct: 899 YLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 957
Query: 370 EEQAVARAHRIGQKREVKVIYM--EAVVDK--ISSHQKEDELRSG-GTVDLEDD 418
++QA R HR+GQ +EV VI + + +++ + +Q++ +L TVD D+
Sbjct: 958 DKQAEDRCHRVGQTKEVLVIKLIGQGTIEESMLKINQQKLKLEQDMTTVDEGDE 1011
Score = 221 (82.9 bits), Expect = 5.0e-39, Sum P(2) = 5.0e-39
Identities = 61/201 (30%), Positives = 100/201 (49%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRL-FSQEVAALKFNVLVTTYEFIMY---DRSKLSK 59
W E++ W P++ + Y G++++R ++ ++ ++NV+VTTY + DRS +
Sbjct: 562 WLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSRYEEYNVIVTTYNCAISSSDDRSLFRR 621
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
+ Y I DE +K+ S+ + L RLLLTGTP+QN+ P +F
Sbjct: 622 LKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMF 681
Query: 120 DNRKA-FHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 178
+ + FS K P AD+ + +++ I H QI++PF+LRR E+V
Sbjct: 682 SSSTSEIRRMFSS---KTKP---ADEQSIYEKER--IAHA-KQIIKPFILRRVKEEVLKQ 732
Query: 179 LPPKVSIVLRCRMSAIQSAIY 199
LPPK + C MS Q +Y
Sbjct: 733 LPPKKDRIELCAMSEKQEQLY 753
Score = 105 (42.0 bits), Expect = 7.2e-27, Sum P(2) = 7.2e-27
Identities = 35/105 (33%), Positives = 52/105 (49%)
Query: 151 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 210
+K I H QI++PF+LRR E+V LPPK + C MS Q +Y + L+
Sbjct: 706 EKERIAHA-KQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLY--MNLFNRLKK 762
Query: 211 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS 255
+ ++KN + N M+LRK NHPLL+ Y++
Sbjct: 763 SINN----MEKNT--------EMCNVMMQLRKMANHPLLHRQYYT 795
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 483 (175.1 bits), Expect = 5.1e-39, Sum P(3) = 5.1e-39
Identities = 131/371 (35%), Positives = 201/371 (54%)
Query: 128 WFSQPFQKEGPTHNADDDWLETEKKVIIIHR-----LHQILEPFMLRRRVEDVEGSLPPK 182
W F G N D+ ++E K + + LH L P +LRR ++DVE SLPPK
Sbjct: 800 WALLHFLDPGKFKNKDE-FVENYKNLSSFNESELANLHLELRPHILRRVIKDVEKSLPPK 858
Query: 183 VSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 242
+ +LR MS +Q Y WI L + D + V+ N + +L N +EL+K
Sbjct: 859 IERILRVEMSPLQKQYYKWI-----LERNFHDLNKGVRGNQV-------SLLNIVVELKK 906
Query: 243 TCNHPLL----NYPYFSDL---SK-DFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTK 294
CNHP L ++ Y D+ SK D ++ S GKL ILD++L++L+ T HRVL+FS M +
Sbjct: 907 CCNHPFLFESADHGYGGDINDNSKLDKIILSSGKLVILDKLLVRLRETKHRVLIFSQMVR 966
Query: 295 LLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS 354
+LDIL EYL R ++R+DG+T E R+ A+ FN+ SD F FLLS RA G G+NL +
Sbjct: 967 MLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFNAPASDDFCFLLSTRAGGLGINLAT 1026
Query: 355 ADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYMEAVVDKISSHQKEDELRSGG 411
ADTV+I+D D NP+N+ QA++RAHRIGQ+ V + + ++V ++I K +
Sbjct: 1027 ADTVVIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEEILERAKRKMVLDHL 1086
Query: 412 TV---DLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLE 468
+ + E L ++ GS +N + A+E+ + D+ + M ++
Sbjct: 1087 VIQKLNAEGRLEKRETKKGS--NFDKNELSAILRFGAEELFKEDKNDEESKKRLLSMDID 1144
Query: 469 TLLHDEERYQE 479
+L E+ +E
Sbjct: 1145 EILERAEQVEE 1155
Score = 308 (113.5 bits), Expect = 7.2e-20, Sum P(4) = 7.2e-20
Identities = 74/209 (35%), Positives = 112/209 (53%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRS-----RLFSQEVAA--LKFNVLVTTYEFIMYD 53
++ W E KWLP ++ I YVG + R ++++ +KFN L+TTYE ++ D
Sbjct: 686 LANWAKEFRKWLPGMNIIVYVGTRASREVCQQYEFYNEKKVGRPIKFNALLTTYEVVLKD 745
Query: 54 RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXX 113
++ LSK+ W Y+++DEA R+K+ E+ L L + + +LL+TGTPLQN
Sbjct: 746 KAVLSKIKWIYLMVDEAHRLKNSEAQLYTALLEFSTKNKLLITGTPLQNSVEELWALLHF 805
Query: 114 XXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVE 173
P F N+ D F + + K + N E+E + LH L P +LRR ++
Sbjct: 806 LDPGKFKNK----DEFVENY-KNLSSFN------ESE-----LANLHLELRPHILRRVIK 849
Query: 174 DVEGSLPPKVSIVLRCRMSAIQSAIYDWI 202
DVE SLPPK+ +LR MS +Q Y WI
Sbjct: 850 DVEKSLPPKIERILRVEMSPLQKQYYKWI 878
Score = 44 (20.5 bits), Expect = 7.2e-20, Sum P(4) = 7.2e-20
Identities = 27/140 (19%), Positives = 56/140 (40%)
Query: 447 EVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSED-EVELFD 505
E FD+ R E L +++ +E+ + S+ +++ ++ R+E E + D
Sbjct: 1101 ETKKGSNFDKNELSAILRFGAEELFKEDKNDEESKKRLLSM-DIDEILERAEQVEEKHTD 1159
Query: 506 QMDEEFGWIEEMTRY----DQVPKWLRASTKEVNATIAN-LSKKPSKNILFGSNIGVDSG 560
+ + E ++ + D W R + T L+ + ++N + VD
Sbjct: 1160 ETEHELLGAFKVANFCNAEDDGSFWSRWIKPDSVVTAEEALAPRAARN----TKSYVDPS 1215
Query: 561 EIETERKRGPKGKKYPNYKE 580
+ KR KG + P + E
Sbjct: 1216 HPDRTSKRKKKGSEPPEHTE 1235
Score = 40 (19.1 bits), Expect = 5.1e-39, Sum P(3) = 5.1e-39
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 685 SLSALEARPGSLSKRMPDELEEGEIAVSGDSH--MDHQQSGSWTHD 728
SL + + P K P EEGE++ G+ + Q+ W D
Sbjct: 1498 SLLSTKDGPRKTQKAEPLVKEEGEMSDDGEVYEQFKEQKWMEWCED 1543
Score = 38 (18.4 bits), Expect = 5.1e-39, Sum P(3) = 5.1e-39
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 869 NFSAKMSDVIQRRCKNVISKL-QRRIEKEG 897
N+ + S++ R + SKL Q + E+EG
Sbjct: 1608 NYVSTFSNLSGDRLNQIYSKLKQEKEEEEG 1637
>MGI|MGI:95453 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:10090 "Mus musculus" [GO:0000018 "regulation
of DNA recombination" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0051304 "chromosome separation" evidence=ISO] [GO:0070932
"histone H3 deacetylation" evidence=ISO] [GO:0070933 "histone H4
deacetylation" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95453 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0043596 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0000792 GO:GO:0070932 GO:GO:0070933
GO:GO:0000729 GO:GO:0000018 HOGENOM:HOG000172362 GO:GO:0035861
KO:K14439 GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
CTD:56916 HOVERGEN:HBG055804 EMBL:X69942 EMBL:AK122454
EMBL:BC042442 EMBL:AK134442 EMBL:AK147884 IPI:IPI00223926
IPI:IPI00556837 PIR:A56559 RefSeq:NP_001240321.1 RefSeq:NP_031984.1
UniGene:Mm.99113 ProteinModelPortal:Q04692 SMR:Q04692 STRING:Q04692
PhosphoSite:Q04692 PaxDb:Q04692 PRIDE:Q04692
Ensembl:ENSMUST00000031984 GeneID:13990 KEGG:mmu:13990
UCSC:uc009ced.1 UCSC:uc012emw.1 InParanoid:Q04692 OrthoDB:EOG4RV2QW
NextBio:284868 Bgee:Q04692 Genevestigator:Q04692
GermOnline:ENSMUSG00000029920 Uniprot:Q04692
Length = 1021
Score = 286 (105.7 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
Identities = 70/174 (40%), Positives = 105/174 (60%)
Query: 251 YPYFSDLSKDF-LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 309
Y + + D L+ GK L IL +L++ G RV+LFS T +LDILE L+ Q
Sbjct: 832 YQHINSYQLDMDLILDSGKFRALGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHR 891
Query: 310 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 369
Y R+DG T + +R I +FN+ D D F+FLLS +A G G+NL SA+ VI++D D NP N
Sbjct: 892 YLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 950
Query: 370 EEQAVARAHRIGQKREVKVIYM--EAVVDK--ISSHQKEDELRSG-GTVDLEDD 418
++QA R HR+GQ +EV VI + + +++ + +Q++ +L TVD D+
Sbjct: 951 DKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEADE 1004
Score = 224 (83.9 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
Identities = 63/201 (31%), Positives = 101/201 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRL-FSQEVAALKFNVLVTTYEFIMY---DRSKLSK 59
W E++ W PS++ + Y G++++R ++ F+ +NV+VTTY + DRS +
Sbjct: 555 WLREVNLWCPSLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYNCAISSSDDRSLFRR 614
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
+ Y I DE +K+ S+ + L + RLLLTGTP+QN+ P +F
Sbjct: 615 LKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNLLELMSLLNFVMPHMF 674
Query: 120 DNRKA-FHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 178
+ + FS K P AD+ + +++ I H QI++PF+LRR E+V
Sbjct: 675 SSSTSEIRRMFSS---KTKP---ADEQSIYEKER--IAHA-KQIIKPFILRRVKEEVLKL 725
Query: 179 LPPKVSIVLRCRMSAIQSAIY 199
LPPK + C MS Q +Y
Sbjct: 726 LPPKKDRIELCAMSEKQEQLY 746
Score = 107 (42.7 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 36/105 (34%), Positives = 53/105 (50%)
Query: 151 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 210
+K I H QI++PF+LRR E+V LPPK + C MS Q +Y +G
Sbjct: 699 EKERIAHA-KQIIKPFILRRVKEEVLKLLPPKKDRIELCAMSEKQEQLY-----SGLFN- 751
Query: 211 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS 255
R++K+ I + + N M+LRK NHPLL+ Y++
Sbjct: 752 -------RLKKS-INNLEKNTEMCNVMMQLRKMANHPLLHRQYYT 788
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 451 (163.8 bits), Expect = 1.0e-38, Sum P(2) = 1.0e-38
Identities = 118/331 (35%), Positives = 178/331 (53%)
Query: 140 HNADD--DWLETEKKV---IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAI 194
++ADD W +T + ++ RLH +L PF+LRR DVE SLPPK + + +S +
Sbjct: 359 NSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKM 418
Query: 195 QSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL----- 249
Q +W +D + ++ K L N M+LRK CNHP L
Sbjct: 419 QR---EWYTRILMKDIDILNSAGKMDK---------MRLLNILMQLRKCCNHPYLFDGAE 466
Query: 250 -NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 308
PY +D+ LV + GK+ +LD++L KL+ G RVL+FS MT++LDILE+Y WR
Sbjct: 467 PGPPYTTDMH---LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNY 523
Query: 309 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPK 368
Y R+DG T ++R+ +I +N +S F+F+LS RA G G+NL +AD VI+YD D NP+
Sbjct: 524 EYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQ 583
Query: 369 NEEQAVARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--RSGGTVDLEDDL 419
+ QA+ RAHRIGQ + V+V E +V++ + D + + G VD +
Sbjct: 584 VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNK 643
Query: 420 AGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 450
GKD + I + + ++ DE I+
Sbjct: 644 IGKDEMLQMIRHGATHVFASKESEITDEDID 674
Score = 314 (115.6 bits), Expect = 8.7e-24, Sum P(2) = 8.7e-24
Identities = 68/196 (34%), Positives = 109/196 (55%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W SE KW+P++ + +G K+QR+ + +++V VT+YE ++ ++S K +W+
Sbjct: 243 WMSEFKKWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWR 302
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+ P+VF++
Sbjct: 303 YLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSAD 362
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F WF T+N D +K ++ RLH +L PF+LRR DVE SLPPK
Sbjct: 363 DFDSWFD--------TNNCLGD----QK---LVERLHMVLRPFLLRRIKADVEKSLPPKK 407
Query: 184 SIVLRCRMSAIQSAIY 199
+ + +S +Q Y
Sbjct: 408 EVKIYVGLSKMQREWY 423
Score = 51 (23.0 bits), Expect = 1.0e-38, Sum P(2) = 1.0e-38
Identities = 25/119 (21%), Positives = 55/119 (46%)
Query: 462 ERRMTLETLLHDE-ERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRY 520
+RR++++ L + RY+ H + N+ +E+E M + G+ +E Y
Sbjct: 911 QRRISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENV-Y 969
Query: 521 DQVPKWLRASTKE------VNATIANLSKKPSK--NILFGSNIGVDSGEIETERKRGPK 571
D++ + +R S + + T L ++ + ++ N+ ++ E ++KRGPK
Sbjct: 970 DELRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPK 1028
Score = 39 (18.8 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 878 IQRRCKNVISKLQR 891
+QRRC +I+ ++R
Sbjct: 996 LQRRCNTLITLIER 1009
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 451 (163.8 bits), Expect = 1.0e-38, Sum P(2) = 1.0e-38
Identities = 118/331 (35%), Positives = 178/331 (53%)
Query: 140 HNADD--DWLETEKKV---IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAI 194
++ADD W +T + ++ RLH +L PF+LRR DVE SLPPK + + +S +
Sbjct: 359 NSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKM 418
Query: 195 QSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL----- 249
Q +W +D + ++ K L N M+LRK CNHP L
Sbjct: 419 QR---EWYTRILMKDIDILNSAGKMDK---------MRLLNILMQLRKCCNHPYLFDGAE 466
Query: 250 -NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 308
PY +D+ LV + GK+ +LD++L KL+ G RVL+FS MT++LDILE+Y WR
Sbjct: 467 PGPPYTTDMH---LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNY 523
Query: 309 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPK 368
Y R+DG T ++R+ +I +N +S F+F+LS RA G G+NL +AD VI+YD D NP+
Sbjct: 524 EYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQ 583
Query: 369 NEEQAVARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--RSGGTVDLEDDL 419
+ QA+ RAHRIGQ + V+V E +V++ + D + + G VD +
Sbjct: 584 VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNK 643
Query: 420 AGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 450
GKD + I + + ++ DE I+
Sbjct: 644 IGKDEMLQMIRHGATHVFASKESEITDEDID 674
Score = 311 (114.5 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 67/196 (34%), Positives = 109/196 (55%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W SE +W+P++ + +G K+QR+ + +++V VT+YE ++ ++S K +W+
Sbjct: 243 WMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWR 302
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+ P+VF++
Sbjct: 303 YLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSAD 362
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F WF T+N D +K ++ RLH +L PF+LRR DVE SLPPK
Sbjct: 363 DFDSWFD--------TNNCLGD----QK---LVERLHMVLRPFLLRRIKADVEKSLPPKK 407
Query: 184 SIVLRCRMSAIQSAIY 199
+ + +S +Q Y
Sbjct: 408 EVKIYVGLSKMQREWY 423
Score = 51 (23.0 bits), Expect = 1.0e-38, Sum P(2) = 1.0e-38
Identities = 25/119 (21%), Positives = 55/119 (46%)
Query: 462 ERRMTLETLLHDE-ERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRY 520
+RR++++ L + RY+ H + N+ +E+E M + G+ +E Y
Sbjct: 911 QRRISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENV-Y 969
Query: 521 DQVPKWLRASTKE------VNATIANLSKKPSK--NILFGSNIGVDSGEIETERKRGPK 571
D++ + +R S + + T L ++ + ++ N+ ++ E ++KRGPK
Sbjct: 970 DELRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPK 1028
Score = 39 (18.8 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 878 IQRRCKNVISKLQR 891
+QRRC +I+ ++R
Sbjct: 996 LQRRCNTLITLIER 1009
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 451 (163.8 bits), Expect = 1.0e-38, Sum P(2) = 1.0e-38
Identities = 118/331 (35%), Positives = 178/331 (53%)
Query: 140 HNADD--DWLETEKKV---IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAI 194
++ADD W +T + ++ RLH +L PF+LRR DVE SLPPK + + +S +
Sbjct: 360 NSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKM 419
Query: 195 QSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL----- 249
Q +W +D + ++ K L N M+LRK CNHP L
Sbjct: 420 QR---EWYTRILMKDIDILNSAGKMDK---------MRLLNILMQLRKCCNHPYLFDGAE 467
Query: 250 -NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 308
PY +D+ LV + GK+ +LD++L KL+ G RVL+FS MT++LDILE+Y WR
Sbjct: 468 PGPPYTTDMH---LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNY 524
Query: 309 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPK 368
Y R+DG T ++R+ +I +N +S F+F+LS RA G G+NL +AD VI+YD D NP+
Sbjct: 525 EYCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQ 584
Query: 369 NEEQAVARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--RSGGTVDLEDDL 419
+ QA+ RAHRIGQ + V+V E +V++ + D + + G VD +
Sbjct: 585 VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNK 644
Query: 420 AGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 450
GKD + I + + ++ DE I+
Sbjct: 645 IGKDEMLQMIRHGATHVFASKESEITDEDID 675
Score = 311 (114.5 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 67/196 (34%), Positives = 109/196 (55%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W SE +W+P++ + +G K+QR+ + +++V VT+YE ++ ++S K +W+
Sbjct: 244 WMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWR 303
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+ P+VF++
Sbjct: 304 YLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSAD 363
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F WF T+N D +K ++ RLH +L PF+LRR DVE SLPPK
Sbjct: 364 DFDSWFD--------TNNCLGD----QK---LVERLHMVLRPFLLRRIKADVEKSLPPKK 408
Query: 184 SIVLRCRMSAIQSAIY 199
+ + +S +Q Y
Sbjct: 409 EVKIYVGLSKMQREWY 424
Score = 51 (23.0 bits), Expect = 1.0e-38, Sum P(2) = 1.0e-38
Identities = 25/119 (21%), Positives = 55/119 (46%)
Query: 462 ERRMTLETLLHDE-ERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRY 520
+RR++++ L + RY+ H + N+ +E+E M + G+ +E Y
Sbjct: 912 QRRISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENV-Y 970
Query: 521 DQVPKWLRASTKE------VNATIANLSKKPSK--NILFGSNIGVDSGEIETERKRGPK 571
D++ + +R S + + T L ++ + ++ N+ ++ E ++KRGPK
Sbjct: 971 DELRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPK 1029
Score = 39 (18.8 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 878 IQRRCKNVISKLQR 891
+QRRC +I+ ++R
Sbjct: 997 LQRRCNTLITLIER 1010
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 451 (163.8 bits), Expect = 1.0e-38, Sum P(2) = 1.0e-38
Identities = 118/331 (35%), Positives = 178/331 (53%)
Query: 140 HNADD--DWLETEKKV---IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAI 194
++ADD W +T + ++ RLH +L PF+LRR DVE SLPPK + + +S +
Sbjct: 360 NSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKM 419
Query: 195 QSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL----- 249
Q +W +D + ++ K L N M+LRK CNHP L
Sbjct: 420 QR---EWYTRILMKDIDILNSAGKMDK---------MRLLNILMQLRKCCNHPYLFDGAE 467
Query: 250 -NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 308
PY +D+ LV + GK+ +LD++L KL+ G RVL+FS MT++LDILE+Y WR
Sbjct: 468 PGPPYTTDMH---LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNY 524
Query: 309 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPK 368
Y R+DG T ++R+ +I +N +S F+F+LS RA G G+NL +AD VI+YD D NP+
Sbjct: 525 EYCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQ 584
Query: 369 NEEQAVARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--RSGGTVDLEDDL 419
+ QA+ RAHRIGQ + V+V E +V++ + D + + G VD +
Sbjct: 585 VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNK 644
Query: 420 AGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 450
GKD + I + + ++ DE I+
Sbjct: 645 IGKDEMLQMIRHGATHVFASKESEITDEDID 675
Score = 311 (114.5 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 67/196 (34%), Positives = 109/196 (55%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W SE +W+P++ + +G K+QR+ + +++V VT+YE ++ ++S K +W+
Sbjct: 244 WMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWR 303
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+ P+VF++
Sbjct: 304 YLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSAD 363
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F WF T+N D +K ++ RLH +L PF+LRR DVE SLPPK
Sbjct: 364 DFDSWFD--------TNNCLGD----QK---LVERLHMVLRPFLLRRIKADVEKSLPPKK 408
Query: 184 SIVLRCRMSAIQSAIY 199
+ + +S +Q Y
Sbjct: 409 EVKIYVGLSKMQREWY 424
Score = 51 (23.0 bits), Expect = 1.0e-38, Sum P(2) = 1.0e-38
Identities = 25/119 (21%), Positives = 55/119 (46%)
Query: 462 ERRMTLETLLHDE-ERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRY 520
+RR++++ L + RY+ H + N+ +E+E M + G+ +E Y
Sbjct: 912 QRRISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENV-Y 970
Query: 521 DQVPKWLRASTKE------VNATIANLSKKPSK--NILFGSNIGVDSGEIETERKRGPK 571
D++ + +R S + + T L ++ + ++ N+ ++ E ++KRGPK
Sbjct: 971 DELRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPK 1029
Score = 39 (18.8 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 878 IQRRCKNVISKLQR 891
+QRRC +I+ ++R
Sbjct: 997 LQRRCNTLITLIER 1010
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 451 (163.8 bits), Expect = 1.0e-38, Sum P(2) = 1.0e-38
Identities = 118/331 (35%), Positives = 178/331 (53%)
Query: 140 HNADD--DWLETEKKV---IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAI 194
++ADD W +T + ++ RLH +L PF+LRR DVE SLPPK + + +S +
Sbjct: 360 NSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKM 419
Query: 195 QSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL----- 249
Q +W +D + ++ K L N M+LRK CNHP L
Sbjct: 420 QR---EWYTRILMKDIDILNSAGKMDK---------MRLLNILMQLRKCCNHPYLFDGAE 467
Query: 250 -NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 308
PY +D+ LV + GK+ +LD++L KL+ G RVL+FS MT++LDILE+Y WR
Sbjct: 468 PGPPYTTDMH---LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNY 524
Query: 309 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPK 368
Y R+DG T ++R+ +I +N +S F+F+LS RA G G+NL +AD VI+YD D NP+
Sbjct: 525 EYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQ 584
Query: 369 NEEQAVARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--RSGGTVDLEDDL 419
+ QA+ RAHRIGQ + V+V E +V++ + D + + G VD +
Sbjct: 585 VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNK 644
Query: 420 AGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 450
GKD + I + + ++ DE I+
Sbjct: 645 IGKDEMLQMIRHGATHVFASKESEITDEDID 675
Score = 311 (114.5 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 67/196 (34%), Positives = 109/196 (55%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W SE +W+P++ + +G K+QR+ + +++V VT+YE ++ ++S K +W+
Sbjct: 244 WMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWR 303
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+ P+VF++
Sbjct: 304 YLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSAD 363
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F WF T+N D +K ++ RLH +L PF+LRR DVE SLPPK
Sbjct: 364 DFDSWFD--------TNNCLGD----QK---LVERLHMVLRPFLLRRIKADVEKSLPPKK 408
Query: 184 SIVLRCRMSAIQSAIY 199
+ + +S +Q Y
Sbjct: 409 EVKIYVGLSKMQREWY 424
Score = 51 (23.0 bits), Expect = 1.0e-38, Sum P(2) = 1.0e-38
Identities = 25/119 (21%), Positives = 55/119 (46%)
Query: 462 ERRMTLETLLHDE-ERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRY 520
+RR++++ L + RY+ H + N+ +E+E M + G+ +E Y
Sbjct: 912 QRRISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENV-Y 970
Query: 521 DQVPKWLRASTKE------VNATIANLSKKPSK--NILFGSNIGVDSGEIETERKRGPK 571
D++ + +R S + + T L ++ + ++ N+ ++ E ++KRGPK
Sbjct: 971 DELRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPK 1029
Score = 39 (18.8 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 878 IQRRCKNVISKLQR 891
+QRRC +I+ ++R
Sbjct: 997 LQRRCNTLITLIER 1010
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 451 (163.8 bits), Expect = 1.0e-38, Sum P(2) = 1.0e-38
Identities = 118/331 (35%), Positives = 178/331 (53%)
Query: 140 HNADD--DWLETEKKV---IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAI 194
++ADD W +T + ++ RLH +L PF+LRR DVE SLPPK + + +S +
Sbjct: 360 NSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKM 419
Query: 195 QSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL----- 249
Q +W +D + ++ K L N M+LRK CNHP L
Sbjct: 420 QR---EWYTRILMKDIDILNSAGKMDK---------MRLLNILMQLRKCCNHPYLFDGAE 467
Query: 250 -NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 308
PY +D+ LV + GK+ +LD++L KL+ G RVL+FS MT++LDILE+Y WR
Sbjct: 468 PGPPYTTDMH---LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNY 524
Query: 309 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPK 368
Y R+DG T ++R+ +I +N +S F+F+LS RA G G+NL +AD VI+YD D NP+
Sbjct: 525 EYCRLDGQTPHDERQESINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQ 584
Query: 369 NEEQAVARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--RSGGTVDLEDDL 419
+ QA+ RAHRIGQ + V+V E +V++ + D + + G VD +
Sbjct: 585 VDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNK 644
Query: 420 AGKDRYIGSIEGLIRNNIQQYKIDMADEVIN 450
GKD + I + + ++ DE I+
Sbjct: 645 IGKDEMLQMIRHGATHVFASKESEITDEDID 675
Score = 311 (114.5 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 67/196 (34%), Positives = 109/196 (55%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W SE +W+P++ + +G K+QR+ + +++V VT+YE ++ ++S K +W+
Sbjct: 244 WMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWR 303
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+ P+VF++
Sbjct: 304 YLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSAD 363
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F WF T+N D +K ++ RLH +L PF+LRR DVE SLPPK
Sbjct: 364 DFDSWFD--------TNNCLGD----QK---LVERLHMVLRPFLLRRIKADVEKSLPPKK 408
Query: 184 SIVLRCRMSAIQSAIY 199
+ + +S +Q Y
Sbjct: 409 EVKIYVGLSKMQREWY 424
Score = 51 (23.0 bits), Expect = 1.0e-38, Sum P(2) = 1.0e-38
Identities = 25/119 (21%), Positives = 55/119 (46%)
Query: 462 ERRMTLETLLHDE-ERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRY 520
+RR++++ L + RY+ H + N+ +E+E M + G+ +E Y
Sbjct: 912 QRRISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENV-Y 970
Query: 521 DQVPKWLRASTKE------VNATIANLSKKPSK--NILFGSNIGVDSGEIETERKRGPK 571
D++ + +R S + + T L ++ + ++ N+ ++ E ++KRGPK
Sbjct: 971 DELRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPK 1029
Score = 39 (18.8 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 878 IQRRCKNVISKLQR 891
+QRRC +I+ ++R
Sbjct: 997 LQRRCNTLITLIER 1010
>UNIPROTKB|H9L0N0 [details] [associations]
symbol:H9L0N0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02032856 EMBL:AADN02032857
EMBL:AADN02032858 EMBL:AADN02032859 EMBL:AADN02032860
EMBL:AADN02032861 EMBL:AADN02032862 EMBL:AADN02032863
EMBL:AADN02032864 EMBL:AADN02032865 Ensembl:ENSGALT00000023599
Uniprot:H9L0N0
Length = 1444
Score = 300 (110.7 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 77/202 (38%), Positives = 110/202 (54%)
Query: 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRR 218
LH+ LEPF+LRR +DVE SLP KV +LR MSA+Q Y WI T + + K
Sbjct: 361 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWI-LTRNYKALSKGSKGS 419
Query: 219 VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------YFSDLSKDFLVKSCGKLWIL 272
N MEL+K CNH L P Y + L++S GKL +L
Sbjct: 420 TSG-----------FLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQHLIRSSGKLILL 468
Query: 273 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332
D++LI+L+ G+RVL+FS M ++LDIL EYL++RQ ++R+DG+ E R+ A+ FN+
Sbjct: 469 DKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAE 528
Query: 333 DSDCFIFLLSIRAAGRGLNLQS 354
S+ L + L L++
Sbjct: 529 GSENLTSLFCYHLTRKSLTLKT 550
Score = 226 (84.6 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 46/132 (34%), Positives = 75/132 (56%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-----VAALKFNVLVTTYEFIMYDRS 55
++ WQ E+ W P ++ + Y+G R+ + + E LKFN+L+TTYE ++ D+S
Sbjct: 217 LTSWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKS 276
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L ++W +I IDEA R+K+ +S+L + L ++ RLL+TGTPLQN
Sbjct: 277 FLGGLNWVFIGIDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIM 336
Query: 116 PEVFDNRKAFHD 127
PE F + + F +
Sbjct: 337 PEKFSSWEDFEE 348
Score = 37 (18.1 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 714 DSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHT 755
D MDH+ SGS + + + + + P HT
Sbjct: 1397 DWQMDHRASGSGSRSPLDQRSPYGSRSPFEHSSDHKSTPEHT 1438
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 450 (163.5 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
Identities = 116/325 (35%), Positives = 174/325 (53%)
Query: 144 DDWLETEKKV---IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYD 200
D W +T + ++ RLH +L PF+LRR DVE SLPPK + + +S +Q +
Sbjct: 351 DSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQR---E 407
Query: 201 WIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL------NYPYF 254
W +D + ++ K L N M+LRK CNHP L PY
Sbjct: 408 WYTRILMKDIDILNSAGKLDK---------MRLLNILMQLRKCCNHPYLFDGAEPGPPYT 458
Query: 255 SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRID 314
+D+ LV + GK+ +LD++L KL+ G RVL+FS MT++LDILE+Y WR Y R+D
Sbjct: 459 TDMH---LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLD 515
Query: 315 GTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAV 374
G T ++R+++I +N S F+F+LS RA G G+NL +AD VI+YD D NP+ + QA+
Sbjct: 516 GQTPHDERQASINAYNEPGSSKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAM 575
Query: 375 ARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--RSGGTVDLEDDLAGKDRY 425
RAHRIGQ + V+V E +V++ + D + + G VD + GKD
Sbjct: 576 DRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKLGKDEM 635
Query: 426 IGSIEGLIRNNIQQYKIDMADEVIN 450
+ I + + ++ DE I+
Sbjct: 636 LQMIRHGATHVFASKESEITDEDID 660
Score = 315 (115.9 bits), Expect = 7.8e-23, Sum P(3) = 7.8e-23
Identities = 67/196 (34%), Positives = 110/196 (56%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W +E +W+P++ + +G KDQR+ + +++V VT+YE ++ ++S K +W+
Sbjct: 229 WMNEFKRWVPTLRAVCLIGDKDQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWR 288
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+ P+VF++ +
Sbjct: 289 YLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSSE 348
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F WF T+N D +K ++ RLH +L PF+LRR DVE SLPPK
Sbjct: 349 DFDSWFD--------TNNCLGD----QK---LVERLHMVLRPFLLRRIKADVEKSLPPKK 393
Query: 184 SIVLRCRMSAIQSAIY 199
+ + +S +Q Y
Sbjct: 394 EVKIYVGLSKMQREWY 409
Score = 51 (23.0 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
Identities = 25/119 (21%), Positives = 55/119 (46%)
Query: 462 ERRMTLETLLHDE-ERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRY 520
+RR++++ L + RY+ H + N+ +E+E M + G+ +E Y
Sbjct: 897 QRRISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENV-Y 955
Query: 521 DQVPKWLRASTKE------VNATIANLSKKPSK--NILFGSNIGVDSGEIETERKRGPK 571
D++ + +R S + + T L ++ + ++ N+ ++ E ++KRGPK
Sbjct: 956 DELRQCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPK 1014
Score = 39 (18.8 bits), Expect = 2.3e-37, Sum P(2) = 2.3e-37
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 878 IQRRCKNVISKLQR 891
+QRRC +I+ ++R
Sbjct: 982 LQRRCNTLITLIER 995
Score = 37 (18.1 bits), Expect = 7.8e-23, Sum P(3) = 7.8e-23
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 453 RFDQRTTHEERRMTL 467
R D +T H+ER+ ++
Sbjct: 513 RLDGQTPHDERQASI 527
>RGD|1309640 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1`" species:10116 "Rattus norvegicus" [GO:0000018
"regulation of DNA recombination" evidence=IEA;ISO] [GO:0000729
"DNA double-strand break processing" evidence=ISO;ISS] [GO:0000792
"heterochromatin" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0035861 "site of double-strand break"
evidence=ISO;ISS] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO;ISS] [GO:0043596 "nuclear replication fork"
evidence=IEA;ISO] [GO:0051304 "chromosome separation"
evidence=ISO;ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISO;ISS] [GO:0070933 "histone H4 deacetylation"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 RGD:1309640 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000729 GO:GO:0000018 GO:GO:0035861 KO:K14439
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ CTD:56916
OrthoDB:EOG4RV2QW EMBL:AABR03032021 IPI:IPI00765483
RefSeq:NP_001101334.2 UniGene:Rn.7758 ProteinModelPortal:D3Z9Z9
Ensembl:ENSRNOT00000008585 GeneID:312398 KEGG:rno:312398
UCSC:RGD:1309640 Uniprot:D3Z9Z9
Length = 1024
Score = 286 (105.7 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 70/174 (40%), Positives = 105/174 (60%)
Query: 251 YPYFSDLSKDF-LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 309
Y + + D L+ GK L IL +L++ G RV+LFS T +LDILE L+ Q
Sbjct: 835 YQHINSYQLDMDLILDSGKFRTLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHR 894
Query: 310 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 369
Y R+DG T + +R I +FN+ D D F+FLLS +A G G+NL SA+ VI++D D NP N
Sbjct: 895 YLRLDGKTQISERIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYN 953
Query: 370 EEQAVARAHRIGQKREVKVIYM--EAVVDK--ISSHQKEDELRSG-GTVDLEDD 418
++QA R HR+GQ +EV VI + + +++ + +Q++ +L TVD D+
Sbjct: 954 DKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQDMTTVDEADE 1007
Score = 221 (82.9 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 62/201 (30%), Positives = 101/201 (50%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRL-FSQEVAALKFNVLVTTYEFIMY---DRSKLSK 59
W E++ W P+++ + Y G++++R ++ F+ +NV+VTTY + DRS +
Sbjct: 558 WLREVNLWCPTLNVLCYYGSQEERKQIRFNIHNKYEDYNVIVTTYNCAISSSDDRSLFRR 617
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
+ Y I DE +K+ S+ + L + RLLLTGTP+QN+ P +F
Sbjct: 618 LKLNYAIFDEGHMLKNMGSIRYQHLMTINARNRLLLTGTPVQNNLLELMSLLNFVMPHMF 677
Query: 120 DNRKA-FHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 178
+ + FS K P AD+ + +++ I H QI++PF+LRR E+V
Sbjct: 678 SSSTSEIRRMFSS---KTKP---ADEQSIYEKER--IAHA-KQIIKPFILRRVKEEVLKL 728
Query: 179 LPPKVSIVLRCRMSAIQSAIY 199
LPPK + C MS Q +Y
Sbjct: 729 LPPKKDQIELCAMSEKQEQLY 749
Score = 107 (42.7 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 36/105 (34%), Positives = 53/105 (50%)
Query: 151 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 210
+K I H QI++PF+LRR E+V LPPK + C MS Q +Y +G
Sbjct: 702 EKERIAHA-KQIIKPFILRRVKEEVLKLLPPKKDQIELCAMSEKQEQLY-----SGLFN- 754
Query: 211 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS 255
R++K+ I + + N M+LRK NHPLL+ Y++
Sbjct: 755 -------RLKKS-INNLEKNTEMCNVMMQLRKMANHPLLHRQYYT 791
>GENEDB_PFALCIPARUM|PFB0730w [details] [associations]
symbol:PFB0730w "DNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0006338 GO:GO:0016514 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS
PIR:F71607 RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 354 (129.7 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 82/254 (32%), Positives = 135/254 (53%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W SE ++W PS++ I Y G K +R + ++++ F++ +TT++ ++ ++S L K+ W
Sbjct: 949 WISEFNRWCPSLNVITYRGNKLERKHI-AKKLLEQTFDICITTFDLVIKEKSFLMKISWN 1007
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
YI++DE RMK+ +S L ++ + R+LLTGTPLQN+ P++F +
Sbjct: 1008 YIVVDEGHRMKNNKSRFHVFLSEFKSKYRILLTGTPLQNNLSELWSLLNFLLPKIFSSCV 1067
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F WF + E + + + E++++II+RLH +L PFMLRR +DV SLP K
Sbjct: 1068 DFEKWFVKSLHNEKDVY----EHITEEEQLLIINRLHSVLLPFMLRRVKKDVLKSLPKKY 1123
Query: 184 SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 243
+ +S Q +Y I+ G ++V N K+++ N M+LRK
Sbjct: 1124 EYNIHIELSLYQKILYKQIQTKGF---------KQVNHNGSITTKIFQ---NIVMQLRKI 1171
Query: 244 CNHP-LLNYPYFSD 256
NHP L Y Y D
Sbjct: 1172 VNHPYLFLYDYNID 1185
Score = 296 (109.3 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 72/195 (36%), Positives = 114/195 (58%)
Query: 140 HNADD--DWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSA 197
HN D + + E++++II+RLH +L PFMLRR +DV SLP K + +S Q
Sbjct: 1078 HNEKDVYEHITEEEQLLIINRLHSVLLPFMLRRVKKDVLKSLPKKYEYNIHIELSLYQKI 1137
Query: 198 IYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL 257
+Y I+ G ++V N K+++ N M+LRK NHP L + Y ++
Sbjct: 1138 LYKQIQTKGF---------KQVNHNGSITTKIFQ---NIVMQLRKIVNHPYL-FLYDYNI 1184
Query: 258 SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 317
++ ++K GK +LDR+L KL + H+VL+FS MTKL++IL +YL++R Y R+DG
Sbjct: 1185 DEN-IIKCSGKFEVLDRMLPKLLKFKHKVLIFSQMTKLMNILCDYLEFRGYKYHRLDGNI 1243
Query: 318 SLEDRESAIVDFNSH 332
L++R+ I FN++
Sbjct: 1244 GLQERKKIIDQFNNN 1258
Score = 170 (64.9 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 55/157 (35%), Positives = 79/157 (50%)
Query: 330 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 389
N + D IF+LS R+ GLNLQ+ADTVII+D D NP + QA+ R HRIGQK VKV
Sbjct: 1397 NGGNQDAMIFILSTRSGSLGLNLQTADTVIIFDSDFNPHQDIQAMCRCHRIGQKNVVKVF 1456
Query: 390 Y------MEAVVDKISSHQKE--DELRSGGTVD-LEDDLAGKDRYIGSIEGLIRNNIQQY 440
+E +V K + H+ D++ G + + +D +DR ++ +I+ N
Sbjct: 1457 RFITLSGVEELVFKKAQHKLSINDKVIQAGLFNKIYND---EDRQ-NKLKDIIQRN---Q 1509
Query: 441 KIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERY 477
K DM N + E LE L ++RY
Sbjct: 1510 KNDMTTHPTNPLLLNYYMKRNEEE--LEYFLDFDKRY 1544
Score = 100 (40.3 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
Identities = 40/180 (22%), Positives = 82/180 (45%)
Query: 426 IGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVP 485
+ +E L+ Q +K+ + D+VI AG F++ E+R+ L+ ++ ++ T H
Sbjct: 1461 LSGVEELVFKKAQ-HKLSINDKVIQAGLFNKIYNDEDRQNKLKDIIQRNQKNDMTTHPTN 1519
Query: 486 SLQEVNRMIARSEDEVELFDQMD-----EEFGWIEEMTRYDQVPK----WLRASTKEVNA 536
L +N + R+E+E+E F D E++ + + V ++ KE N
Sbjct: 1520 PLL-LNYYMKRNEEELEYFLDFDKRYFGEQYFSLLNTLNVENVDSGQFTYMSEDEKEENE 1578
Query: 537 T-IANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDE 595
T ++++ KK K + GE + E +R + K+ ++ DD+ + + +E
Sbjct: 1579 TYLSSIIKKEKKE---------EEGEDDEENQRD-RNKEEDQDEDKDDDKDKDKDKDKEE 1628
Score = 41 (19.5 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 695 SLSKRMPDELEEGEIAVSG--DSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSI 748
S+ K+ E EEGE D + + Q D+D+ +D+ + + K+++ I
Sbjct: 1583 SIIKKEKKE-EEGEDDEENQRDRNKEEDQDEDKDDDKDKDKDKDKEEEEEKKRKHI 1637
Score = 41 (19.5 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 696 LSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPR 753
LS + E +E E G+ ++Q+ + D+DE +D+ + K K K + R
Sbjct: 1581 LSSIIKKEKKEEE----GEDDEENQRDRNKEEDQDEDKDDDKDKDKDKDKEEEEEKKR 1634
Score = 40 (19.1 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 860 KIANASGSSNFSAKMSDVIQRRCKN 884
KI N N K+ D+IQR KN
Sbjct: 1490 KIYNDEDRQN---KLKDIIQRNQKN 1511
Score = 37 (18.1 bits), Expect = 3.8e-38, Sum P(3) = 3.8e-38
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 557 VDSGEI----ETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERN 597
VDSG+ E E++ KE +E GE E + +RN
Sbjct: 1561 VDSGQFTYMSEDEKEENETYLSSIIKKEKKEEEGEDDEENQRDRN 1605
>UNIPROTKB|O96239 [details] [associations]
symbol:PFB0730w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0032508 "DNA duplex unwinding" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006338
GO:GO:0016514 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS PIR:F71607
RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 354 (129.7 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 82/254 (32%), Positives = 135/254 (53%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W SE ++W PS++ I Y G K +R + ++++ F++ +TT++ ++ ++S L K+ W
Sbjct: 949 WISEFNRWCPSLNVITYRGNKLERKHI-AKKLLEQTFDICITTFDLVIKEKSFLMKISWN 1007
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
YI++DE RMK+ +S L ++ + R+LLTGTPLQN+ P++F +
Sbjct: 1008 YIVVDEGHRMKNNKSRFHVFLSEFKSKYRILLTGTPLQNNLSELWSLLNFLLPKIFSSCV 1067
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F WF + E + + + E++++II+RLH +L PFMLRR +DV SLP K
Sbjct: 1068 DFEKWFVKSLHNEKDVY----EHITEEEQLLIINRLHSVLLPFMLRRVKKDVLKSLPKKY 1123
Query: 184 SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 243
+ +S Q +Y I+ G ++V N K+++ N M+LRK
Sbjct: 1124 EYNIHIELSLYQKILYKQIQTKGF---------KQVNHNGSITTKIFQ---NIVMQLRKI 1171
Query: 244 CNHP-LLNYPYFSD 256
NHP L Y Y D
Sbjct: 1172 VNHPYLFLYDYNID 1185
Score = 296 (109.3 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 72/195 (36%), Positives = 114/195 (58%)
Query: 140 HNADD--DWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSA 197
HN D + + E++++II+RLH +L PFMLRR +DV SLP K + +S Q
Sbjct: 1078 HNEKDVYEHITEEEQLLIINRLHSVLLPFMLRRVKKDVLKSLPKKYEYNIHIELSLYQKI 1137
Query: 198 IYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL 257
+Y I+ G ++V N K+++ N M+LRK NHP L + Y ++
Sbjct: 1138 LYKQIQTKGF---------KQVNHNGSITTKIFQ---NIVMQLRKIVNHPYL-FLYDYNI 1184
Query: 258 SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 317
++ ++K GK +LDR+L KL + H+VL+FS MTKL++IL +YL++R Y R+DG
Sbjct: 1185 DEN-IIKCSGKFEVLDRMLPKLLKFKHKVLIFSQMTKLMNILCDYLEFRGYKYHRLDGNI 1243
Query: 318 SLEDRESAIVDFNSH 332
L++R+ I FN++
Sbjct: 1244 GLQERKKIIDQFNNN 1258
Score = 170 (64.9 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 55/157 (35%), Positives = 79/157 (50%)
Query: 330 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 389
N + D IF+LS R+ GLNLQ+ADTVII+D D NP + QA+ R HRIGQK VKV
Sbjct: 1397 NGGNQDAMIFILSTRSGSLGLNLQTADTVIIFDSDFNPHQDIQAMCRCHRIGQKNVVKVF 1456
Query: 390 Y------MEAVVDKISSHQKE--DELRSGGTVD-LEDDLAGKDRYIGSIEGLIRNNIQQY 440
+E +V K + H+ D++ G + + +D +DR ++ +I+ N
Sbjct: 1457 RFITLSGVEELVFKKAQHKLSINDKVIQAGLFNKIYND---EDRQ-NKLKDIIQRN---Q 1509
Query: 441 KIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERY 477
K DM N + E LE L ++RY
Sbjct: 1510 KNDMTTHPTNPLLLNYYMKRNEEE--LEYFLDFDKRY 1544
Score = 100 (40.3 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
Identities = 40/180 (22%), Positives = 82/180 (45%)
Query: 426 IGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVP 485
+ +E L+ Q +K+ + D+VI AG F++ E+R+ L+ ++ ++ T H
Sbjct: 1461 LSGVEELVFKKAQ-HKLSINDKVIQAGLFNKIYNDEDRQNKLKDIIQRNQKNDMTTHPTN 1519
Query: 486 SLQEVNRMIARSEDEVELFDQMD-----EEFGWIEEMTRYDQVPK----WLRASTKEVNA 536
L +N + R+E+E+E F D E++ + + V ++ KE N
Sbjct: 1520 PLL-LNYYMKRNEEELEYFLDFDKRYFGEQYFSLLNTLNVENVDSGQFTYMSEDEKEENE 1578
Query: 537 T-IANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDE 595
T ++++ KK K + GE + E +R + K+ ++ DD+ + + +E
Sbjct: 1579 TYLSSIIKKEKKE---------EEGEDDEENQRD-RNKEEDQDEDKDDDKDKDKDKDKEE 1628
Score = 41 (19.5 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 695 SLSKRMPDELEEGEIAVSG--DSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSI 748
S+ K+ E EEGE D + + Q D+D+ +D+ + + K+++ I
Sbjct: 1583 SIIKKEKKE-EEGEDDEENQRDRNKEEDQDEDKDDDKDKDKDKDKEEEEEKKRKHI 1637
Score = 41 (19.5 bits), Expect = 1.5e-38, Sum P(3) = 1.5e-38
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 696 LSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPR 753
LS + E +E E G+ ++Q+ + D+DE +D+ + K K K + R
Sbjct: 1581 LSSIIKKEKKEEE----GEDDEENQRDRNKEEDQDEDKDDDKDKDKDKDKEEEEEKKR 1634
Score = 40 (19.1 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 860 KIANASGSSNFSAKMSDVIQRRCKN 884
KI N N K+ D+IQR KN
Sbjct: 1490 KIYNDEDRQN---KLKDIIQRNQKN 1511
Score = 37 (18.1 bits), Expect = 3.8e-38, Sum P(3) = 3.8e-38
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 557 VDSGEI----ETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERN 597
VDSG+ E E++ KE +E GE E + +RN
Sbjct: 1561 VDSGQFTYMSEDEKEENETYLSSIIKKEKKEEEGEDDEENQRDRN 1605
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 466 (169.1 bits), Expect = 3.3e-38, Sum P(3) = 3.3e-38
Identities = 126/351 (35%), Positives = 191/351 (54%)
Query: 140 HNADD--DWLETEKKV---IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAI 194
++ADD W +T+ + ++ RLH +L+PF+LRR DVE SLPPK I + +S +
Sbjct: 375 NSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKVYLGLSKM 434
Query: 195 QSAIYDWIKATGTLR-VDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL---- 249
Q +W ++ +D + ++ K L N M+LRK CNHP L
Sbjct: 435 QR---EWWYTKILMKDIDVLNSAGKMDK---------MRLLNILMQLRKCCNHPYLFDGA 482
Query: 250 --NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ 307
PY +D + +V + GK+ +LD++L KL+ G RVL+FS MT+LLDILE+Y WR
Sbjct: 483 EPGPPYTTD---EHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRG 539
Query: 308 LVYRRIDGTTSLEDRES--AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP 365
Y R+DG T E+RE AI FN+ +S FIF+LS RA G G+NL SAD VI+YD D
Sbjct: 540 YEYCRLDGQTPHEEREKKEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDW 599
Query: 366 NPKNEEQAVARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--RSGGTVDLE 416
NP+ + QA+ RAHRIGQK+ V+V + E +V++ + D + + G +D +
Sbjct: 600 NPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQ 659
Query: 417 DDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA--GRFDQRTTHEERRM 465
+ K+ + I + + ++ DE I R +++T R+
Sbjct: 660 SNKLAKEEMLQMIRHGATHVFASKESELTDEDITTLLERGEKKTAEMNERL 710
Score = 318 (117.0 bits), Expect = 5.8e-22, Sum P(3) = 5.8e-22
Identities = 70/192 (36%), Positives = 108/192 (56%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W +E +W+PS+ I +VG KD R+ E+ +++V VT+YE ++ ++S K W+
Sbjct: 259 WMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWR 318
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+ P+VF++
Sbjct: 319 YLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAD 378
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F WF T N D +K ++ RLH +L+PF+LRR DVE SLPPK
Sbjct: 379 DFDSWFD--------TKNCLGD----QK---LVERLHAVLKPFLLRRIKTDVEKSLPPKK 423
Query: 184 SIVLRCRMSAIQ 195
I + +S +Q
Sbjct: 424 EIKVYLGLSKMQ 435
Score = 39 (18.8 bits), Expect = 3.3e-38, Sum P(3) = 3.3e-38
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 879 QRRCKNVISKLQRRIEKEGHQI 900
QRRC +IS IEKE +I
Sbjct: 1016 QRRCNTLISL----IEKENMEI 1033
Score = 38 (18.4 bits), Expect = 3.3e-38, Sum P(3) = 3.3e-38
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 756 VERPEERSCT-DTPLHR-GDSSLLPFQMDNK 784
+ER E+++ + L + G+SSL F+MD +
Sbjct: 696 LERGEKKTAEMNERLQKMGESSLRNFRMDTE 726
>ZFIN|ZDB-GENE-070228-1 [details] [associations]
symbol:ercc6 "excision repair cross-complementing
rodent repair deficiency, complementation group 6" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-070228-1 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
EMBL:CR762493 IPI:IPI00933448 RefSeq:XP_688972.2
Ensembl:ENSDART00000112380 GeneID:560477 KEGG:dre:560477
NextBio:20883461 Bgee:F1RDN1 Uniprot:F1RDN1
Length = 1390
Score = 455 (165.2 bits), Expect = 1.0e-37, Sum P(2) = 1.0e-37
Identities = 122/404 (30%), Positives = 201/404 (49%)
Query: 1 MSMWQSELHKWLPS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLS 58
M W E H W P V+ ++ G+ + E+ A +L+T+Y +I + +
Sbjct: 555 MHQWVKEFHTWWPPFRVAVLHDTGSFTSKKEKLIPEIVA-SHGILITSYSYIRIMQDYIQ 613
Query: 59 KVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 118
+ DW Y+I+DE ++++ + + ++R R +L+G+P+QN+ P
Sbjct: 614 RYDWHYVILDEGHKIRNPNAGVTTACKQFRTPHRFILSGSPMQNNLKELWSLFDFVFPGK 673
Query: 119 FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG- 177
F + FS P G NA ++T K + L + P++LRR DV+
Sbjct: 674 LGTLPVFMEQFSVPITMGGYA-NASPVQVQTAYKCACV--LRDTINPYLLRRMKADVKAN 730
Query: 178 -SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNR 236
SLP K VL CR++ Q +Y +D + E ++ + +V+ L
Sbjct: 731 LSLPDKNEQVLFCRLTEDQRQVYQTF-------LDSK-EVYQILNGDM---QVFSGL--- 776
Query: 237 CMELRKTCNHP---------LLNYPYFSDLSKD--F-LVKSCGKLWILDRILIKLQRTGH 284
+ LRK CNHP L P+ L+++ F K GK+ +++ +L + GH
Sbjct: 777 -IALRKICNHPDLFTGGPRLLRGIPH-DQLTEEEHFGYWKRSGKMIVVESLLRLWHKQGH 834
Query: 285 RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 344
RVLLF+ ++L+ILE +++ Y ++DGTT++ R+ I FN + D F+F+L+ R
Sbjct: 835 RVLLFTQSRQMLEILEVFVKENGFSYLKMDGTTTIASRQPLIAQFNQN-KDIFVFILTTR 893
Query: 345 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
G G+NL A+ V+IYDPD NP + QA RA RIGQK++V V
Sbjct: 894 VGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKQQVTV 937
Score = 42 (19.8 bits), Expect = 1.0e-37, Sum P(2) = 1.0e-37
Identities = 33/124 (26%), Positives = 52/124 (41%)
Query: 736 QVLQ-PKIKRK-RSIRVRPRHTVERPEERSCTDTP-LHRGDSS--LLPFQMDNKYPAQLR 790
+VL+ PK +R +S + T+ P+ T+T + G S +P + P+Q
Sbjct: 963 RVLKDPKQRRFFKSNDIYELFTLSSPDGSQGTETSAIFAGTGSDVQVPKRHKTSSPSQGT 1022
Query: 791 TDTEMKAHGESNSLRHDQSE---PS---SKSRRN-LPSRKIANAPKSRASLKTGRLNCMP 843
T + +H + R+ S P+ S+S N L SR AN S S +N
Sbjct: 1023 TRPSL-SHSTDSGNRNTTSVNGLPNNNTSESPNNKLESRSNANGLTSSTSKALSSMNSPQ 1081
Query: 844 GHTE 847
H E
Sbjct: 1082 KHRE 1085
Score = 38 (18.4 bits), Expect = 2.7e-37, Sum P(2) = 2.7e-37
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 720 QQSGSWTHDRDEGEDEQVLQPKIKRK 745
Q SG+ T ++ +D ++++ + +K
Sbjct: 1236 QSSGTMTKSAEKCKDAEIVKKSVVKK 1261
>MGI|MGI:1923501 [details] [associations]
symbol:Ercc6l2 "excision repair cross-complementing rodent
repair deficiency, complementation group 6 like 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1923501
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006281 GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 CTD:375748 HOGENOM:HOG000074171
HOVERGEN:HBG108393 OMA:HGNRKDN EMBL:AK002307 EMBL:AK082850
EMBL:AC154248 EMBL:AF217319 EMBL:BC032964 IPI:IPI00403243
IPI:IPI00754737 IPI:IPI00857027 RefSeq:NP_075996.2
UniGene:Mm.186610 ProteinModelPortal:Q9JIM3 SMR:Q9JIM3 PRIDE:Q9JIM3
Ensembl:ENSMUST00000021926 Ensembl:ENSMUST00000067821 GeneID:76251
KEGG:mmu:76251 UCSC:uc007qyb.2 UCSC:uc007qyc.2 NextBio:344851
Bgee:Q9JIM3 CleanEx:MM_0610007P08RIK Genevestigator:Q9JIM3
Uniprot:Q9JIM3
Length = 699
Score = 280 (103.6 bits), Expect = 1.0e-37, Sum P(2) = 1.0e-37
Identities = 65/156 (41%), Positives = 93/156 (59%)
Query: 240 LRKTCNHPLLNYPYFSDLSKDFLV------KSCGKLWILDRILIKLQRTGHRVLLFSTMT 293
+++ C+ +P F SKD K GK+ +L ++L ++ +VLLFS T
Sbjct: 473 IKRICDRVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHFRKQRDKVLLFSFST 532
Query: 294 KLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ 353
KLLD+L++Y L YRR+DG+T E+R + +FNS D I L+S A G GLN
Sbjct: 533 KLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNS-SQDVNICLVSTMAGGLGLNFV 591
Query: 354 SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 389
A+ VI++DP NP N+ QAV RA+RIGQ R+VKV+
Sbjct: 592 GANVVILFDPTWNPANDLQAVDRAYRIGQCRDVKVL 627
Score = 213 (80.0 bits), Expect = 1.0e-37, Sum P(2) = 1.0e-37
Identities = 57/202 (28%), Positives = 94/202 (46%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W+ EL W + + KD Q K + +TTYE + +L+ ++W
Sbjct: 210 WKDELDTWGYFRVTVLHGSKKDNELLRLKQR----KCEIALTTYETLRLCLEELNSLEWS 265
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
II+DEA R+K+ ++ + + +C+ R+ LTGT LQN+ P + +R
Sbjct: 266 AIIVDEAHRIKNPKARVTEVMKAVKCKVRIGLTGTVLQNNMKELWCVMDWAVPGLLGSRI 325
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F FS P + G H A L T +K + HRL + + + LRR ++G LP K
Sbjct: 326 HFKKQFSDPVE-HGQRHTATKRELATGRKAM--HRLAKKMSGWFLRRTKTLIKGQLPKKE 382
Query: 184 SIVLRCRMSAIQSAIYDWIKAT 205
++ C ++ Q A+Y + T
Sbjct: 383 DRMVYCSLTDFQKAVYQTVLET 404
Score = 43 (20.2 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 851 DHFKESWDGKIANASGSSNFSAKMSDVIQRRC 882
+HF++ D K+ S FS K+ DV+Q+ C
Sbjct: 516 NHFRKQRD-KVLLFS----FSTKLLDVLQQYC 542
Score = 39 (18.8 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 860 KIANASG---SSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTD 906
K+AN +++ S VI+R C V S+ ++K L+D
Sbjct: 452 KVANHVALLQAASTSKHQETVIKRICDRVFSRFPDFVQKSKDAAFETLSD 501
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 268 (99.4 bits), Expect = 1.5e-37, Sum P(3) = 1.5e-37
Identities = 57/132 (43%), Positives = 85/132 (64%)
Query: 257 LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT 316
L+KD + S GKL L+++L K +R G++ LLF+ K+LDILE +L + R+DG+
Sbjct: 1759 LNKDISLGS-GKLCALEKLLSKCKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGS 1817
Query: 317 TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVAR 376
T +E R+ + FN+ D FIF+ S R+ G+NL +A+ VI YD D NP ++QA+ R
Sbjct: 1818 TKVEQRQKIVTKFNN-DKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDR 1876
Query: 377 AHRIGQKREVKV 388
HRIGQ ++V V
Sbjct: 1877 CHRIGQTKDVHV 1888
Score = 239 (89.2 bits), Expect = 1.5e-37, Sum P(3) = 1.5e-37
Identities = 56/201 (27%), Positives = 100/201 (49%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W+ EL ++ P + Y G +++R + F++ +++Y ++ D + WK
Sbjct: 726 WEIELKRFCPCFKILSYYGNQNERYKKRVGWFNKDSFHICISSYSTVVKDHLVFKRKRWK 785
Query: 64 YIIIDEAQRMKD----RESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
YII+DEA +K+ R +++ L R C LL+TGTPLQN P +F
Sbjct: 786 YIILDEAHNIKNFNTKRWNIIL-SLKRDNC---LLITGTPLQNSLEELWSLLHFLMPNIF 841
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F +WFS P + + K+ +I RLH ++ P++LRR ++VE +
Sbjct: 842 TSHLDFKEWFSDPLNLA-----IEKSKIHHSKE--LIDRLHTVIRPYILRRLKKNVEKEM 894
Query: 180 PPKVSIVLRCRMSAIQSAIYD 200
P K +++C+++ Q +YD
Sbjct: 895 PNKYEHIIKCKLTRRQQILYD 915
Score = 109 (43.4 bits), Expect = 7.4e-24, Sum P(4) = 7.4e-24
Identities = 33/115 (28%), Positives = 55/115 (47%)
Query: 155 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 214
+I RLH ++ P++LRR ++VE +P K +++C+++ Q +YD
Sbjct: 870 LIDRLHTVIRPYILRRLKKNVEKEMPNKYEHIIKCKLTRRQQILYDEFI----------- 918
Query: 215 EKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH------PLLNYPYFSDLSKDFLV 263
+ VQ N + Y L N ++LRK CNH + PY+ LS + V
Sbjct: 919 NNKNVQ-NTLNTGN-YIGLMNILIQLRKVCNHCDLFTNKYIQTPYYYMLSIRYFV 971
Score = 52 (23.4 bits), Expect = 1.5e-37, Sum P(3) = 1.5e-37
Identities = 26/121 (21%), Positives = 59/121 (48%)
Query: 430 EGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQE 489
E + + +Q+ K+D + IN G F+ TH + T T H+++ + +V +++E
Sbjct: 1899 ENIWKKQLQKRKLD--NICINMGNFNNSNTHSKITDTDPT--HNKDWFT----NVDTIKE 1950
Query: 490 VNRMIARSEDEVELF-DQMDEEFGWIEEMTRYD-QVPKWLRASTKEVNATIANLSKKPSK 547
V ++D+ +++ D++ E +E + + + K L + + N +KK ++
Sbjct: 1951 VFINKKNNDDDDDMYKDRLLHE--QVENKDKMNVRFEKTLEHVEDKDDIRALNETKKETQ 2008
Query: 548 N 548
N
Sbjct: 2009 N 2009
Score = 46 (21.3 bits), Expect = 7.4e-24, Sum P(4) = 7.4e-24
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 47 YEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV-LARDLDRYRCQRR 92
YE YD+ K++K ++ ++ + D S + RD R CQ++
Sbjct: 506 YESDNYDKEKINKKKELILLKNDIENDSDETSEHIKRD-SRSSCQKQ 551
Score = 44 (20.5 bits), Expect = 1.0e-36, Sum P(3) = 1.0e-36
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 728 DRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEER 762
D D+ +++L +++ K + VR T+E E++
Sbjct: 1960 DDDDMYKDRLLHEQVENKDKMNVRFEKTLEHVEDK 1994
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 268 (99.4 bits), Expect = 1.5e-37, Sum P(3) = 1.5e-37
Identities = 57/132 (43%), Positives = 85/132 (64%)
Query: 257 LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT 316
L+KD + S GKL L+++L K +R G++ LLF+ K+LDILE +L + R+DG+
Sbjct: 1759 LNKDISLGS-GKLCALEKLLSKCKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGS 1817
Query: 317 TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVAR 376
T +E R+ + FN+ D FIF+ S R+ G+NL +A+ VI YD D NP ++QA+ R
Sbjct: 1818 TKVEQRQKIVTKFNN-DKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDR 1876
Query: 377 AHRIGQKREVKV 388
HRIGQ ++V V
Sbjct: 1877 CHRIGQTKDVHV 1888
Score = 239 (89.2 bits), Expect = 1.5e-37, Sum P(3) = 1.5e-37
Identities = 56/201 (27%), Positives = 100/201 (49%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W+ EL ++ P + Y G +++R + F++ +++Y ++ D + WK
Sbjct: 726 WEIELKRFCPCFKILSYYGNQNERYKKRVGWFNKDSFHICISSYSTVVKDHLVFKRKRWK 785
Query: 64 YIIIDEAQRMKD----RESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
YII+DEA +K+ R +++ L R C LL+TGTPLQN P +F
Sbjct: 786 YIILDEAHNIKNFNTKRWNIIL-SLKRDNC---LLITGTPLQNSLEELWSLLHFLMPNIF 841
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
+ F +WFS P + + K+ +I RLH ++ P++LRR ++VE +
Sbjct: 842 TSHLDFKEWFSDPLNLA-----IEKSKIHHSKE--LIDRLHTVIRPYILRRLKKNVEKEM 894
Query: 180 PPKVSIVLRCRMSAIQSAIYD 200
P K +++C+++ Q +YD
Sbjct: 895 PNKYEHIIKCKLTRRQQILYD 915
Score = 109 (43.4 bits), Expect = 7.4e-24, Sum P(4) = 7.4e-24
Identities = 33/115 (28%), Positives = 55/115 (47%)
Query: 155 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 214
+I RLH ++ P++LRR ++VE +P K +++C+++ Q +YD
Sbjct: 870 LIDRLHTVIRPYILRRLKKNVEKEMPNKYEHIIKCKLTRRQQILYDEFI----------- 918
Query: 215 EKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH------PLLNYPYFSDLSKDFLV 263
+ VQ N + Y L N ++LRK CNH + PY+ LS + V
Sbjct: 919 NNKNVQ-NTLNTGN-YIGLMNILIQLRKVCNHCDLFTNKYIQTPYYYMLSIRYFV 971
Score = 52 (23.4 bits), Expect = 1.5e-37, Sum P(3) = 1.5e-37
Identities = 26/121 (21%), Positives = 59/121 (48%)
Query: 430 EGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQE 489
E + + +Q+ K+D + IN G F+ TH + T T H+++ + +V +++E
Sbjct: 1899 ENIWKKQLQKRKLD--NICINMGNFNNSNTHSKITDTDPT--HNKDWFT----NVDTIKE 1950
Query: 490 VNRMIARSEDEVELF-DQMDEEFGWIEEMTRYD-QVPKWLRASTKEVNATIANLSKKPSK 547
V ++D+ +++ D++ E +E + + + K L + + N +KK ++
Sbjct: 1951 VFINKKNNDDDDDMYKDRLLHE--QVENKDKMNVRFEKTLEHVEDKDDIRALNETKKETQ 2008
Query: 548 N 548
N
Sbjct: 2009 N 2009
Score = 46 (21.3 bits), Expect = 7.4e-24, Sum P(4) = 7.4e-24
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 47 YEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV-LARDLDRYRCQRR 92
YE YD+ K++K ++ ++ + D S + RD R CQ++
Sbjct: 506 YESDNYDKEKINKKKELILLKNDIENDSDETSEHIKRD-SRSSCQKQ 551
Score = 44 (20.5 bits), Expect = 1.0e-36, Sum P(3) = 1.0e-36
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 728 DRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEER 762
D D+ +++L +++ K + VR T+E E++
Sbjct: 1960 DDDDMYKDRLLHEQVENKDKMNVRFEKTLEHVEDK 1994
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 448 (162.8 bits), Expect = 2.0e-37, Sum P(2) = 2.0e-37
Identities = 113/309 (36%), Positives = 175/309 (56%)
Query: 144 DDWLETEK---KVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYD 200
D W + ++ RLH++L+PF+LRR DVE SL PK + + +S +Q +
Sbjct: 318 DSWFSNDAMSGNTDLVQRLHKVLQPFLLRRIKSDVEKSLLPKKEVKVYVGLSKMQR---E 374
Query: 201 WIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL------NYPYF 254
W +D + +V+K A+ L N M LRK NHP L P+
Sbjct: 375 WYTKVLMKDIDIINGAGKVEK-----AR----LMNILMHLRKCVNHPYLFDGAEPGPPFT 425
Query: 255 SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRID 314
+D LV + GK+ +LD++L+K + G RVL+FS +++LD+LE++ WR Y R+D
Sbjct: 426 TD---QHLVDNSGKMVVLDKLLMKFKEQGSRVLIFSQFSRMLDLLEDFCWWRHYEYCRLD 482
Query: 315 GTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAV 374
G+T EDR +AI +N+ DS FIF+L+ RA G G+NL +AD VIIYD D NP+++ QA+
Sbjct: 483 GSTPHEDRSNAIEAYNAPDSKKFIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAM 542
Query: 375 ARAHRIGQKREVKVIYM--EAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIE-- 430
RAHRIGQK++V+V + E VD+ + E +LR V + ++ + +G +
Sbjct: 543 DRAHRIGQKKQVRVFRLITENTVDERIIEKAEAKLRLDNIVIQQGRMSEAQKTLGKGDMI 602
Query: 431 GLIRNNIQQ 439
+IR+ +Q
Sbjct: 603 SMIRHGAEQ 611
Score = 312 (114.9 bits), Expect = 1.5e-21, Sum P(3) = 1.5e-21
Identities = 66/196 (33%), Positives = 108/196 (55%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W +E KW PS++ + +G + R+++ + KF+V TTYE ++ +++L K++W+
Sbjct: 196 WANEFKKWCPSINAVVLIGDEAARNQVLRDVILPQKFDVCCTTYEMMLKVKTQLKKLNWR 255
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
YIIIDEA R+K+ +S L+ + + RLL+TGTPLQN+ P++F +
Sbjct: 256 YIIIDEAHRIKNEKSKLSETVRELNSENRLLITGTPLQNNLHELWALLNFLLPDIFTSSD 315
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F WFS + + N D ++ RLH++L+PF+LRR DVE SL PK
Sbjct: 316 DFDSWFSN----DAMSGNTD-----------LVQRLHKVLQPFLLRRIKSDVEKSLLPKK 360
Query: 184 SIVLRCRMSAIQSAIY 199
+ + +S +Q Y
Sbjct: 361 EVKVYVGLSKMQREWY 376
Score = 41 (19.5 bits), Expect = 2.0e-37, Sum P(2) = 2.0e-37
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 878 IQRRCKNVISKLQRRIEK--EGHQIVPLLTDLWKRI 911
+QRRC +I+ ++R + + E ++ D K +
Sbjct: 953 LQRRCNTLITLIEREMGEVVESKPVIVTAADKKKSV 988
Score = 37 (18.1 bits), Expect = 1.5e-21, Sum P(3) = 1.5e-21
Identities = 22/121 (18%), Positives = 48/121 (39%)
Query: 435 NNIQQYKIDMADEVINAGRFDQRTTHE-ERRMTLETLLHDEERYQETVHDVPSLQEVNRM 493
+ I Q K +I D+R + E ++ L+ ++ + R E + ++ M
Sbjct: 546 HRIGQKKQVRVFRLITENTVDERIIEKAEAKLRLDNIVIQQGRMSEAQKTLGKGDMIS-M 604
Query: 494 IARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGS 553
I ++V F D +++ D + + T E+N + + + +N+ F
Sbjct: 605 IRHGAEQV--FAAKDSTIS-DDDI---DTILEKAEVKTAELNEKMGKIDENNLRNMTFED 658
Query: 554 N 554
N
Sbjct: 659 N 659
>UNIPROTKB|F6XTU7 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AAEX03026896
Ensembl:ENSCAFT00000029649 Uniprot:F6XTU7
Length = 1075
Score = 318 (117.0 bits), Expect = 2.3e-37, Sum P(4) = 2.3e-37
Identities = 70/192 (36%), Positives = 108/192 (56%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W +E +W+PS+ I +VG KD R+ E+ +++V VT+YE ++ ++S K W+
Sbjct: 247 WMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWR 306
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+ P+VF++
Sbjct: 307 YLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAD 366
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F WF T N D +K ++ RLH +L+PF+LRR DVE SLPPK
Sbjct: 367 DFDSWFD--------TKNCLGD----QK---LVERLHAVLKPFLLRRIKTDVEKSLPPKK 411
Query: 184 SIVLRCRMSAIQ 195
I + +S +Q
Sbjct: 412 EIKVYLGLSKMQ 423
Score = 194 (73.4 bits), Expect = 2.3e-37, Sum P(4) = 2.3e-37
Identities = 51/155 (32%), Positives = 83/155 (53%)
Query: 322 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 381
++ AI FN+ +S FIF+LS RA G G+NL SAD VI+YD D NP+ + QA+ RAHRIG
Sbjct: 558 KKEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIG 617
Query: 382 QKREVKVIYM-------EAVVDKISSHQKEDEL--RSGGTVDLEDDLAGKDRYIGSIEGL 432
QK+ V+V + E +V++ + D + + G +D + + K+ + I
Sbjct: 618 QKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHG 677
Query: 433 IRNNIQQYKIDMADEVINA--GRFDQRTTHEERRM 465
+ + ++ DE I R +++T R+
Sbjct: 678 ATHVFASKESELTDEDITTLLERGEKKTAEMNERL 712
Score = 39 (18.8 bits), Expect = 2.3e-37, Sum P(4) = 2.3e-37
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 879 QRRCKNVISKLQRRIEKEGHQI 900
QRRC +IS IEKE +I
Sbjct: 1018 QRRCNTLISL----IEKENMEI 1035
Score = 38 (18.4 bits), Expect = 2.3e-37, Sum P(4) = 2.3e-37
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 756 VERPEERSCT-DTPLHR-GDSSLLPFQMDNK 784
+ER E+++ + L + G+SSL F+MD +
Sbjct: 698 LERGEKKTAEMNERLQKMGESSLRNFRMDTE 728
>UNIPROTKB|F1N166 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:DAAA02067438 EMBL:DAAA02067437 IPI:IPI01018574
Ensembl:ENSBTAT00000002973 Uniprot:F1N166
Length = 1078
Score = 321 (118.1 bits), Expect = 2.9e-37, Sum P(4) = 2.9e-37
Identities = 71/196 (36%), Positives = 110/196 (56%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W +E +W+PS+ I +VG KD R+ E+ +++V VT+YE ++ ++S K W+
Sbjct: 250 WMNEFKRWVPSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWR 309
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y++IDEA R+K+ +S L+ + ++ RLLLTGTPLQN+ P+VF++ +
Sbjct: 310 YLVIDEAHRIKNEKSKLSEIVRDFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAE 369
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F WF T N D +K ++ RLH +L+PF+LRR DVE SLPPK
Sbjct: 370 DFDSWFD--------TKNCLGD----QK---LVERLHTVLKPFLLRRIKTDVEKSLPPKK 414
Query: 184 SIVLRCRMSAIQSAIY 199
I + +S +Q Y
Sbjct: 415 EIKIYLGLSKMQREWY 430
Score = 300 (110.7 bits), Expect = 5.9e-35, Sum P(4) = 5.9e-35
Identities = 75/195 (38%), Positives = 107/195 (54%)
Query: 144 DDWLETEKKV---IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYD 200
D W +T+ + ++ RLH +L+PF+LRR DVE SLPPK I + +S +Q +
Sbjct: 372 DSWFDTKNCLGDQKLVERLHTVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQR---E 428
Query: 201 WIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL------NYPYF 254
W +D + ++ K L N M+LRK CNHP L PY
Sbjct: 429 WYTKILMKDIDVLNSAGKMDK---------MRLLNILMQLRKCCNHPYLFDGAEPGPPYT 479
Query: 255 SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRID 314
+D + +V + GK+ +LD++L KL+ G RVL+FS MT+LLDILE+Y WR Y R+D
Sbjct: 480 TD---EHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLD 536
Query: 315 GTTSLEDRESAIVDF 329
G T E+RE + DF
Sbjct: 537 GQTPHEEREEILKDF 551
Score = 191 (72.3 bits), Expect = 2.9e-37, Sum P(4) = 2.9e-37
Identities = 55/177 (31%), Positives = 90/177 (50%)
Query: 300 EEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 359
EE L+ ++++ G+ AI FN +S FIF+LS RA G G+NL SAD VI
Sbjct: 545 EEILKDFKIIFHEYQGSNE------AIEAFNIPNSSKFIFMLSTRAGGLGINLASADVVI 598
Query: 360 IYDPDPNPKNEEQAVARAHRIGQKREVKVIYM-------EAVVDKISSHQKEDEL--RSG 410
+YD D NP+ + QA+ RAHRIGQK+ V+V + E +V++ + D + + G
Sbjct: 599 LYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQG 658
Query: 411 GTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA--GRFDQRTTHEERRM 465
+D + + K+ + I + + ++ DE I R +++T R+
Sbjct: 659 RLIDQQSNKMAKEEMLQMIRHGATHVFASKESELTDEDITTLLERGEKKTAEMNERL 715
Score = 42 (19.8 bits), Expect = 5.2e-22, Sum P(4) = 5.2e-22
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 453 RFDQRTTHEERRMTLET---LLHDEERYQETVH--DVPS 486
R D +T HEER L+ + H+ + E + ++P+
Sbjct: 534 RLDGQTPHEEREEILKDFKIIFHEYQGSNEAIEAFNIPN 572
Score = 39 (18.8 bits), Expect = 2.9e-37, Sum P(4) = 2.9e-37
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 879 QRRCKNVISKLQRRIEKEGHQI 900
QRRC +IS IEKE +I
Sbjct: 1021 QRRCNTLISL----IEKENMEI 1038
Score = 37 (18.1 bits), Expect = 2.9e-37, Sum P(4) = 2.9e-37
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 756 VERPEERSCT-DTPLHR-GDSSLLPFQMD 782
+ER E+++ + L + G+SSL F+MD
Sbjct: 701 LERGEKKTAEMNERLQKMGESSLRNFRMD 729
>ZFIN|ZDB-GENE-030131-4532 [details] [associations]
symbol:chd4b "chromodomain helicase DNA binding
protein 4b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-030131-4532
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX511250
IPI:IPI00931161 RefSeq:XP_685699.4 UniGene:Dr.75373
Ensembl:ENSDART00000092902 Ensembl:ENSDART00000148389 GeneID:560622
KEGG:dre:560622 CTD:560622 NextBio:20883532 Uniprot:F1RBT2
Length = 1953
Score = 443 (161.0 bits), Expect = 3.3e-37, Sum P(2) = 3.3e-37
Identities = 171/623 (27%), Positives = 285/623 (45%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLVTTYEFIMYDRSKLSK 59
W+ E W P + + YVG KD R+ + F+ E A++ + + + +
Sbjct: 800 WEREFEMWAPDMYVVTYVGDKDSRAVIRENEFTFEDNAIRGGKKASKMKKEAAVKFHVLL 859
Query: 60 VDWKYIIIDEAQRMK-DRESVLARDLDRYRC-QRRL--LLTGTPLQNDXXXXXXXXXXXX 115
++ I ID+A D ++ + R + Q + +L PLQ+
Sbjct: 860 TSYELITIDQAILGSIDWACLVVDEAHRLKNNQSKFFRVLNNYPLQHKLLLTGTPLQNNL 919
Query: 116 PEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDV 175
E+F F P ++ +++ + K+ I +LH +L P MLRR DV
Sbjct: 920 EELFHLLN-----FLTP-ERFNNLEGFLEEFADIAKEDQI-KKLHDMLGPHMLRRLKADV 972
Query: 176 EGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNN 235
+P K +++R +S +Q Y +I L + E R N + +L N
Sbjct: 973 FKHMPSKTELIVRVELSPMQKKYYKYI-----LTRNFEALNTRGGGNQV-------SLLN 1020
Query: 236 RCMELRKTCNHPLLNYPYFSDLSK--------DFLVKSCGKLWILDRILIKLQRTGHRVL 287
M+L+K CNHP L ++ K L K+ GKL +L ++L KL+ GHRVL
Sbjct: 1021 VVMDLKKCCNHPYLFPTAATEAPKMPNGMYDGSALTKASGKLMLLFKMLKKLKEGGHRVL 1080
Query: 288 LFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 347
+FS MTK+LD+LE++L+ Y RIDG + R+ AI FN+ + F+FLLS RA G
Sbjct: 1081 IFSQMTKMLDLLEDFLENEGYKYERIDGGVTGGMRQEAIDRFNAPGAPQFVFLLSTRAGG 1140
Query: 348 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYMEAVVDKISSHQKE 404
G+NL +ADTVIIYD D NP N+ QA +RAHRIGQ ++V + + +V ++I+ K+
Sbjct: 1141 LGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTKASVEERITQVAKK 1200
Query: 405 DELRSGGTVDLEDDLAGKDRYIGS--IEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEE 462
+ + V L K + ++ +++ +Q D E N D H +
Sbjct: 1201 KMMLTHLVV--RPGLGSKAGSMSKQELDDILKFGTEQLFKDELGEGDNKEE-DSSVIHYD 1257
Query: 463 RRMTLETLLHDEERYQET----VHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMT 518
+ L +++ ++T +++ S +V + + + EDE E + +D E EE
Sbjct: 1258 DKAIDRLLDRNQDATEDTELQSMNEYLSSFKVAQYVVKDEDEEE--EDVDREIIKQEESV 1315
Query: 519 RYDQVPKWLRASTKEVNATIAN---LSKKPSKNILFGSNIGVDSGEI-ETERKRGPKGKK 574
D K LR ++ +A K+P K + + D G + + +
Sbjct: 1316 DPDYWEKLLRHHYEQQQEDLARHLGKGKRPRKPVNYNDCSQEDRGSRRDWQDDQSDNQSD 1375
Query: 575 YP-NYKEVDDEIGEYSEASSDER 596
Y +E D++ E SEA++ R
Sbjct: 1376 YSVASEEGDEDFDERSEAANSRR 1398
Score = 54 (24.1 bits), Expect = 3.3e-37, Sum P(2) = 3.3e-37
Identities = 38/154 (24%), Positives = 58/154 (37%)
Query: 693 PGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDR-----DEGEDEQVLQPKIKR--K 745
P LSK ++++E E GD + + GS D DEGE K ++ K
Sbjct: 1569 PEDLSKT--EDIKELEEKTEGDG--EKEVKGSRQEDEIIEIPDEGEKSPSSAKKEEKTDK 1624
Query: 746 RSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDT--EMKAHGESNS 803
S + R E+ D + S D K T++ K ES+
Sbjct: 1625 ESEASSEKDGGSRENEK---DGEKEKSAESKENMSSDVKADGSDATNSGDSTKTKEESSE 1681
Query: 804 LRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTG 837
+ D S P+S ++ L K P+ A L+ G
Sbjct: 1682 EKMDTS-PASDEKKELKDEKDGVKPEDSAKLQNG 1714
Score = 45 (20.9 bits), Expect = 2.9e-36, Sum P(2) = 2.9e-36
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 571 KGKKYPNYKEVDDEIGEYSEASSDERNG 598
+G+K P+ + +++ + SEASS++ G
Sbjct: 1608 EGEKSPSSAKKEEKTDKESEASSEKDGG 1635
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 299 (110.3 bits), Expect = 4.2e-37, Sum P(2) = 4.2e-37
Identities = 92/280 (32%), Positives = 136/280 (48%)
Query: 259 KDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 318
K L CGKL L +L +L GHR L+F+ MTK+LDILE++L Y R+DG T
Sbjct: 1358 KTLLQYDCGKLQKLATLLQELTSQGHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGATK 1417
Query: 319 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 378
+EDR+ FN D +F+LS R+ G G+NL ADTVI YD D NP ++Q R H
Sbjct: 1418 IEDRQLLTEKFN-RDPKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCH 1476
Query: 379 RIGQKREVKVIYMEAVVDKISSH--QKEDELRSGGTVDLEDDLAGKDRYIG--SIEGLIR 434
RIGQ R+V IY I S+ +K ++ R V +++ D Y G S+ L+
Sbjct: 1477 RIGQVRDVH-IYRFVSEYTIESNIIKKANQKRQLDNVVIQEGEFTTD-YFGKFSVRDLVS 1534
Query: 435 NN-----IQQYKIDMADEVINAGRFDQRTTHEER---RMTLETLLHDEERYQE-----TV 481
++ I ID + + Q E+R L+ + D++ ++E T
Sbjct: 1535 DSNIGKEITDRTIDFSGDAKMGNVLAQAEDEEDRVAAGAALKEVAIDDDDFKEETRSATT 1594
Query: 482 HDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEE-MTRY 520
P+ E N + D + ++ G I+E M R+
Sbjct: 1595 GATPAPTETNALSTTDGDAAFIDVDYEDGIGHIDEYMLRF 1634
Score = 199 (75.1 bits), Expect = 4.2e-37, Sum P(2) = 4.2e-37
Identities = 67/259 (25%), Positives = 109/259 (42%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
M W+ E K+ P + Y G+ QR++ F+V +T+Y+ ++ D+ +
Sbjct: 884 MLNWEMEFKKFAPGFKVLTYYGSPQQRAQKRKGWNKPDAFHVCITSYQLVVQDQQSFKRR 943
Query: 61 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXX---------XXXX 111
W Y+I+DEA +K+ S R L + + RLLLTGTPLQN+
Sbjct: 944 RWTYMILDEAHNIKNFRSTRWRALLNFNTENRLLLTGTPLQNNLMELWSLLYFLMPSSKV 1003
Query: 112 XXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 171
PE F N F WF +P + +A + L E + R Q ++ R
Sbjct: 1004 NQAMPEGFANLDDFQQWFGKPVNRILEQTSAGNSDLIDENE-----RTTQKMDE-ETRNT 1057
Query: 172 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI---KATGTLRVDPEDEKRRVQKNPIYQAK 228
V + L P + L+ + Y+ I + + R +D R + +
Sbjct: 1058 VARLHQVLRPYLLRRLKKDVEKQMPGKYEHIVYCRLSKRQRFLYDDFMSRAKTKETLASG 1117
Query: 229 VYKTLNNRCMELRKTCNHP 247
+ ++ N M+LRK CNHP
Sbjct: 1118 NFLSIINCLMQLRKVCNHP 1136
>ZFIN|ZDB-GENE-040426-892 [details] [associations]
symbol:chd1l "chromodomain helicase DNA binding
protein 1-like" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR001357
ZFIN:ZDB-GENE-040426-892 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 GO:GO:0004386 SUPFAM:SSF52113 PROSITE:PS50172
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154 CTD:9557
HOGENOM:HOG000030789 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV
EMBL:BC050498 IPI:IPI00482841 RefSeq:NP_956607.1 UniGene:Dr.84280
ProteinModelPortal:Q7ZU90 PRIDE:Q7ZU90 GeneID:393283
KEGG:dre:393283 InParanoid:Q7ZU90 NextBio:20814340
ArrayExpress:Q7ZU90 Uniprot:Q7ZU90
Length = 1026
Score = 434 (157.8 bits), Expect = 5.0e-37, P = 5.0e-37
Identities = 120/310 (38%), Positives = 173/310 (55%)
Query: 141 NADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYD 200
NA D ++TE ++ LHQ+L+PF+LRR +V LP K +V+ +SA+Q Y
Sbjct: 224 NAYAD-IQTEPA--LVDELHQVLQPFLLRRVKAEVAAELPKKTELVVFHGLSALQKRYYK 280
Query: 201 WI--KATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN---YPYFS 255
I + R D + R L N M+LRK +HP L P
Sbjct: 281 AILMRDLDAFRTDQSTKTR---------------LLNVLMQLRKCVDHPYLFDGVEPEPF 325
Query: 256 DLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDG 315
++ + LV++ GKL +LD +L LQ GH VLLFS MT++LDIL++YL++R Y R+DG
Sbjct: 326 EMG-EHLVEASGKLSLLDSMLAYLQEGGHHVLLFSQMTRMLDILQDYLEYRGYSYERLDG 384
Query: 316 TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVA 375
+ E+R AI +F++ D FIFLLS +A G G+NL +ADTVI D D NP+N+ QA A
Sbjct: 385 SVRGEERNLAIKNFST--KDVFIFLLSTKAGGVGMNLTAADTVIFVDGDFNPQNDLQAAA 442
Query: 376 RAHRIGQKREVKVIYM--EAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLI 433
RAHRIGQ R VKVI + +++I + +LR TV E + D+ + GL
Sbjct: 443 RAHRIGQTRPVKVIRLLGRDTIEEIIYSRAVSKLRLTDTVIEEGRFSLLDQAQSAASGLQ 502
Query: 434 RNNIQQYKID 443
+ I ++ +D
Sbjct: 503 LSEILKFGVD 512
Score = 284 (105.0 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 73/216 (33%), Positives = 113/216 (52%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W+ EL ++ PS+S I Y G K++R+ L + +F+VL+TTYE + D L WK
Sbjct: 99 WRQELERFCPSLSVICYTGDKEKRAELQQNLKSDPRFHVLLTTYEMCLKDARYLKSWKWK 158
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
+++DEA R+K++ES+L + L + R+LLTGTP+QN+ P VF +
Sbjct: 159 ILVVDEAHRLKNQESLLHQTLKEFTVGFRVLLTGTPIQNNLQEVYSLLTFIQPSVF-LPE 217
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
A D+ NA D ++TE ++ LHQ+L+PF+LRR +V LP K
Sbjct: 218 AVEDFV-----------NAYAD-IQTEPA--LVDELHQVLQPFLLRRVKAEVAAELPKKT 263
Query: 184 SIVLRCRMSAIQSAIYDWI--KATGTLRVDPEDEKR 217
+V+ +SA+Q Y I + R D + R
Sbjct: 264 ELVVFHGLSALQKRYYKAILMRDLDAFRTDQSTKTR 299
Score = 39 (18.8 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 419 LAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRF 454
L G+D +IE +I + K+ + D VI GRF
Sbjct: 458 LLGRD----TIEEIIYSRAVS-KLRLTDTVIEEGRF 488
>UNIPROTKB|G5E5P9 [details] [associations]
symbol:LOC789977 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 OMA:HGNRKDN EMBL:DAAA02024017
EMBL:DAAA02024018 EMBL:DAAA02024019 EMBL:DAAA02024020
EMBL:DAAA02024021 EMBL:DAAA02024022 Ensembl:ENSBTAT00000027486
Uniprot:G5E5P9
Length = 908
Score = 277 (102.6 bits), Expect = 5.3e-37, Sum P(3) = 5.3e-37
Identities = 63/156 (40%), Positives = 93/156 (59%)
Query: 240 LRKTCNHPLLNYPYFSDLSKDFLV------KSCGKLWILDRILIKLQRTGHRVLLFSTMT 293
+++ C+ +P F SKD K GK+ +L ++L ++ +VLLFS T
Sbjct: 412 IKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNKDKVLLFSFST 471
Query: 294 KLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ 353
KLLD+L++Y L YRR+DG+T E+R + +FNS D I L+S A G GLN
Sbjct: 472 KLLDVLQQYCMASGLDYRRLDGSTKSEERIKIVKEFNS-TQDVNICLVSTMAGGLGLNFV 530
Query: 354 SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 389
A+ V+++DP NP N+ QA+ RA+RIGQ R+VKV+
Sbjct: 531 GANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVL 566
Score = 205 (77.2 bits), Expect = 5.3e-37, Sum P(3) = 5.3e-37
Identities = 76/282 (26%), Positives = 125/282 (44%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W+ EL W I + KD S L V K + +TTYE + +L+ ++W
Sbjct: 149 WKDELDTWGYFRVTILHGNKKD--SELI--RVKQRKCEIALTTYETLRLCLDELNSLEWS 204
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
+I+DEA R+K+ ++ + + RC R+ LTGT LQN+ P + +R
Sbjct: 205 AVIVDEAHRIKNPKARVTEIMKALRCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSRI 264
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F FS P + G H A L T +K + RL + + + LRR ++ LP K
Sbjct: 265 HFKKQFSDPVE-HGQRHTATKRELATGRKAM--QRLARKMSGWFLRRTKTLIKDQLPKKE 321
Query: 184 SIVLRCRMSAIQSAIYDWIKATGTLRV-----DP----EDEKRRVQKNPIY----QAKVY 230
++ C ++ Q A+Y + T + + +P +KRR N Y Q +
Sbjct: 322 DRMVYCSLTDFQKAVYQTVLETEDVSLILQSSEPCTCNSGQKRR---NCCYKTNSQGETV 378
Query: 231 KTLNNRCME-LRKTCNHPLLNYPYFSDLSKDFLVKS-CGKLW 270
KTL + L+K NH L + ++ L+K C +++
Sbjct: 379 KTLYFSYLAVLQKVANHVALLQTASTSRQQETLIKRICDQVF 420
Score = 57 (25.1 bits), Expect = 5.3e-37, Sum P(3) = 5.3e-37
Identities = 17/78 (21%), Positives = 32/78 (41%)
Query: 392 EAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYK-IDMADEVIN 450
+ + DKIS K + T + D+YIG++ ++N +Q+ I VI
Sbjct: 821 KTIKDKISVSSKLTNHKRNSTFIPRKPINRDDKYIGTLFNFLKNGVQEVAYIHSNQNVIG 880
Query: 451 AGRFDQRTTHEERRMTLE 468
+ + + + R E
Sbjct: 881 SSKAENHMSRWAARDVFE 898
Score = 41 (19.5 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 869 NFSAKMSDVIQRRC 882
+FS K+ DV+Q+ C
Sbjct: 468 SFSTKLLDVLQQYC 481
Score = 40 (19.1 bits), Expect = 3.1e-35, Sum P(3) = 3.1e-35
Identities = 23/118 (19%), Positives = 50/118 (42%)
Query: 429 IEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQ 488
IE L N ++ D++DE + F + ++R + +E +E +++
Sbjct: 720 IETLKSNTKRKGGSDISDESDDIEVFCKSRVRKQRATSSLRFKRKKENKRELYTFPKTMK 779
Query: 489 EVNRMIARSED----EVELFDQMDEEF--GWIEEMTRYDQVPKWLRASTKEVNATIAN 540
+ N+ A ED ++ F D+ G I ++ + PK ++ V++ + N
Sbjct: 780 KANQQCATDEDCNSQTIDDFSSSDDNLSVGHIS-FSKQNHRPKTIKDKIS-VSSKLTN 835
Score = 38 (18.4 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 860 KIANASG---SSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTD 906
K+AN +++ S + +I+R C V S+ ++K L+D
Sbjct: 391 KVANHVALLQTASTSRQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSD 440
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 447 (162.4 bits), Expect = 5.6e-37, Sum P(2) = 5.6e-37
Identities = 109/251 (43%), Positives = 151/251 (60%)
Query: 144 DDWLETE---KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYD 200
D+W + + ++ +LH++L PF+LRR DVE LPPK +L+ MS +Q Y
Sbjct: 380 DEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYY- 438
Query: 201 WIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY---PYFSDL 257
KA L+ D E ++ K L N M+LRK CNHP L P
Sbjct: 439 --KAL--LQKDLEVVNGGGER---------KRLLNIAMQLRKCCNHPYLFQGAEPGPPYT 485
Query: 258 SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 317
+ D LV + GK+ +LD++L KL+ RVL+FS MT+LLDILE+YL +R Y RIDG T
Sbjct: 486 TGDHLVTNAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNT 545
Query: 318 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA 377
++R+++I +N S+ F+FLLS RA G G+NL +AD VI+YD D NP+ + QA RA
Sbjct: 546 GGDERDASIEAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRA 605
Query: 378 HRIGQKREVKV 388
HRIGQK+EV+V
Sbjct: 606 HRIGQKKEVQV 616
Score = 313 (115.2 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 68/216 (31%), Positives = 119/216 (55%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W +E+ ++ P + + ++G ++R + + + A KF++ VT++E + +++ L + W+
Sbjct: 258 WMNEIRRFCPVLRAVKFLGNPEERRHIREELLVAGKFDICVTSFEMAIKEKTTLRRFSWR 317
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
YIIIDEA R+K+ S+L++ + + RLL+TGTPLQN+ PEVF + +
Sbjct: 318 YIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAE 377
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F +WF Q G ++D E ++ +LH++L PF+LRR DVE LPPK
Sbjct: 378 TFDEWF----QISG-----ENDQQE------VVQQLHKVLRPFLLRRLKSDVEKGLPPKK 422
Query: 184 SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRV 219
+L+ MS +Q Y + V+ E++R+
Sbjct: 423 ETILKVGMSQMQKQYYKALLQKDLEVVNGGGERKRL 458
Score = 39 (18.8 bits), Expect = 5.6e-37, Sum P(2) = 5.6e-37
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 949 VQFMLKGAMQFYGFSHEVRSEAR 971
+QF + + FY F + + E++
Sbjct: 710 IQFKMDDSADFYDFDDDNKDESK 732
>DICTYBASE|DDB_G0267556 [details] [associations]
symbol:DDB_G0267556 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0267556
GO:GO:0005524 GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_647125.1 ProteinModelPortal:Q55GQ9
EnsemblProtists:DDB0233433 GeneID:8615929 KEGG:ddi:DDB_G0267556
InParanoid:Q55GQ9 OMA:CANVVIF ProtClustDB:CLSZ2501118
Uniprot:Q55GQ9
Length = 1159
Score = 244 (91.0 bits), Expect = 1.1e-36, Sum P(3) = 1.1e-36
Identities = 74/252 (29%), Positives = 121/252 (48%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRL---FSQEVAALKFNVLVTTYE--FIMYDRS 55
++ W+ E W PS+S + Y G +R L ++ FNV++TTY F DR
Sbjct: 603 LANWEREFQTWCPSLSIVRYYGNLREREELRYELKKKRPGKDFNVILTTYNLLFANNDRG 662
Query: 56 KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXX 115
L + D+ ++I+DEAQ +K+ +S +++ + RLLLTGTPLQN+
Sbjct: 663 FLKRFDYSFLILDEAQNIKNSDSKRYKNIFKIGAHHRLLLTGTPLQNNLYELWSLLNFLM 722
Query: 116 PEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDV 175
P +F + K + +Q + +N DD ++ I R+ +IL PF+LRR V
Sbjct: 723 PHIFGSVKKDNYLLNQLLE-----YNGDD--CDSA-----ITRMKKILSPFILRRLKSTV 770
Query: 176 EGSLPPKVSIVLRCRMSAIQSAIYDWI----KATGTLRVDPEDEKRRVQKNPIYQAKVYK 231
L PK+ V C++ Q Y I K+ LR + +K + +K Q+ +
Sbjct: 771 SKELKPKIEHVEICKLPKFQDETYKNIIERSKSQWKLRNELLLKKEKEEKEKEKQSLINS 830
Query: 232 TLNNRCMELRKT 243
+ N+ + RKT
Sbjct: 831 S-NSSIKKKRKT 841
Score = 236 (88.1 bits), Expect = 1.1e-36, Sum P(3) = 1.1e-36
Identities = 65/170 (38%), Positives = 99/170 (58%)
Query: 242 KT-CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIK-LQRTGHRVLLFSTMTKLLDIL 299
KT C H L Y+ + + +++ K L IL K + +VL+FS MT++LDIL
Sbjct: 960 KTVCEHEDLGDKYW--IPDEQFIETSTKCLKLKEILAKEIGVNKSKVLIFSQMTRVLDIL 1017
Query: 300 EEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 359
E+ L + R+DG+T + +R+S I F+S ++ +FLLS + G G+NL A+ VI
Sbjct: 1018 EDVLDIFGYNFTRLDGSTPVNERQSIIDHFSSKET-IPVFLLSTNSGGLGINLTCANVVI 1076
Query: 360 IYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQKEDE 406
YD NP+ + QA RAHR+GQ+REV +IY E VD I+ H+ ++
Sbjct: 1077 FYDLSFNPQVDRQAEDRAHRLGQEREV-IIYKLLAENTVD-INIHESANQ 1124
Score = 62 (26.9 bits), Expect = 1.1e-36, Sum P(3) = 1.1e-36
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 233 LNNRCMELRKTCNHPLL 249
LNN M+LRK NHPLL
Sbjct: 895 LNNILMQLRKAANHPLL 911
Score = 52 (23.4 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 190 RMSAIQSA-IYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 248
RM I S I +K+T + + P+ E + K P +Q + YK + R K N L
Sbjct: 753 RMKKILSPFILRRLKSTVSKELKPKIEHVEICKLPKFQDETYKNIIERSKSQWKLRNELL 812
Query: 249 L 249
L
Sbjct: 813 L 813
Score = 47 (21.6 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 44/198 (22%), Positives = 86/198 (43%)
Query: 368 KNEEQAVARAHR--IGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDL-----EDD-- 418
+ E+Q++ + I +KR+ IY ++K + +D G +DL E D
Sbjct: 821 EKEKQSLINSSNSSIKKKRKTSSIYKNNKIEKDEIIEIDDGGDDDGLIDLTKTNDEKDME 880
Query: 419 LAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQ 478
L+ K + GS + ++ N + Q + ++ F ++ L T D Y+
Sbjct: 881 LSIKLKSNGSGQFVLNNILMQLRKAANHPLLCKNIFYNDNQIQDIVNHLATKDKDWSDYR 940
Query: 479 ETVHDVPSLQEVNRMIARSEDEVELFDQM--DEEFG---WIEEMTRYDQVPKWLRASTKE 533
+D+PSL+E + + + ++F + E+ G WI + + K L+ KE
Sbjct: 941 ---NDIPSLKE----LFDTYSDYDVFKTVCEHEDLGDKYWIPDEQFIETSTKCLKL--KE 991
Query: 534 VNATIANLSKKPSKNILF 551
+ A ++K SK ++F
Sbjct: 992 ILAKEIGVNK--SKVLIF 1007
Score = 38 (18.4 bits), Expect = 8.7e-15, Sum P(2) = 8.7e-15
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 557 VDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDE 595
++S ++KR Y N K DEI E + D+
Sbjct: 828 INSSNSSIKKKR-KTSSIYKNNKIEKDEIIEIDDGGDDD 865
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 429 (156.1 bits), Expect = 1.2e-36, P = 1.2e-36
Identities = 152/492 (30%), Positives = 242/492 (49%)
Query: 129 FSQP--FQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIV 186
F +P F KE + + + EK+ L+++L+PF+LRR +V LP K +V
Sbjct: 221 FVEPDLFSKE-QVEDFVQRYQDIEKESESASELYKLLQPFLLRRVKAEVATELPRKTEVV 279
Query: 187 LRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 246
+ MSA+Q Y KA +D + + AK K L N +LRK +H
Sbjct: 280 IYHGMSALQKKYY---KAILMKDLDAFENET---------AKKVK-LQNVLSQLRKCVDH 326
Query: 247 PLLN---YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL 303
P L P ++ D L+++ GKL +LD++L L GHRVLLFS MT++LDIL++YL
Sbjct: 327 PYLFDGVEPEPFEIG-DHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYL 385
Query: 304 QWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP 363
+R Y R+DG+ E+R AI +F F FLLS RA G G+NL +ADTVI +D
Sbjct: 386 DYRGYSYERVDGSVRGEERHLAIKNFGQQP--IFTFLLSTRAGGVGMNLTAADTVIFFDS 443
Query: 364 DPNPKNEEQAVARAHRIGQKREVKVIYM--EAVVDKISSHQKEDELRSGGTVDLEDDLAG 421
D NP+N+ QA ARAHRIGQ + VKVI + V++I + +L+ T+ + G
Sbjct: 444 DFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNTI-----IEG 498
Query: 422 KDRYIGSIEGLIRNNIQQYKIDM--ADEVINAGRFDQRTTHEERRMTLETLLHDEERYQE 479
+G+ + ++Q +I D+++++ + T HE + L+++L + E
Sbjct: 499 GHFTLGAQKPAADADLQLSEILKFGLDKLLSS---EGSTMHE---IDLKSILGETEDGHW 552
Query: 480 TVHDVPSLQEVNRMIARSEDEVELFDQMD-EEFGWIEEMTRYDQV---PKWLRASTKEVN 535
+P+ +E +R ++ + LF+ D + E+ ++Q+ K L T +
Sbjct: 553 VSDALPTAEEGSREPEEGKNHMYLFEGKDYSKEPSKEDRESFEQLVNLQKTLLEKTSQEG 612
Query: 536 ATIANLSKKPSKNILFGSNIG---VDSGEIETERKR----GPKGKKYPNYKEVDDEIGEY 588
+ N P ++ GS + E+E RKR K K+ K E E+
Sbjct: 613 RLLRNKGSVPIPGLVEGSTKRKRILSPEELEDRRKRRQEAAAKRKRLLEEKRKKKEEAEH 672
Query: 589 SEASSD-ERNGY 599
+ + E N Y
Sbjct: 673 KKKMAWWESNNY 684
Score = 279 (103.3 bits), Expect = 2.2e-20, P = 2.2e-20
Identities = 70/228 (30%), Positives = 115/228 (50%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W+ E+ ++ P +SC+ Y G KD+R+ L +F+VL+TTYE + D S L
Sbjct: 109 LSNWKEEMERFAPGLSCVTYAGDKDKRACLQQDLKQESRFHVLLTTYEICLKDASFLKSF 168
Query: 61 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFD 120
W +++DEA R+K++ S+L + L + LLLTGTP+QN P++F
Sbjct: 169 PWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLF- 227
Query: 121 NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP 180
+++ D F Q +Q + EK+ L+++L+PF+LRR +V LP
Sbjct: 228 SKEQVED-FVQRYQ-------------DIEKESESASELYKLLQPFLLRRVKAEVATELP 273
Query: 181 PKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 228
K +V+ MSA+Q Y I + E K+ +N + Q +
Sbjct: 274 RKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAKKVKLQNVLSQLR 321
>TAIR|locus:2051678 [details] [associations]
symbol:ETL1 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC005936 HOGENOM:HOG000172362
KO:K14439 EMBL:AY059857 EMBL:BT002576 IPI:IPI00520453 PIR:H84432
RefSeq:NP_178318.1 UniGene:At.13358 ProteinModelPortal:Q9ZUL5
SMR:Q9ZUL5 IntAct:Q9ZUL5 PaxDb:Q9ZUL5 PRIDE:Q9ZUL5
EnsemblPlants:AT2G02090.1 GeneID:814740 KEGG:ath:AT2G02090
TAIR:At2g02090 InParanoid:Q9ZUL5 OMA:CAKISAD PhylomeDB:Q9ZUL5
ProtClustDB:CLSN2683669 ArrayExpress:Q9ZUL5 Genevestigator:Q9ZUL5
Uniprot:Q9ZUL5
Length = 763
Score = 271 (100.5 bits), Expect = 1.6e-36, Sum P(3) = 1.6e-36
Identities = 59/128 (46%), Positives = 84/128 (65%)
Query: 272 LDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 331
L +L ++++GHRVL+FS T +LDILE L + YRR+DG+T + DR++ + FN+
Sbjct: 593 LAELLPSMKKSGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTIVDTFNN 652
Query: 332 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 391
D F LLS RA G+GLNL ADTVII+D D NP+ + QA R HRIGQ + V + +
Sbjct: 653 -DKSIFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQIDRQAEDRCHRIGQTKPVTIFRL 711
Query: 392 --EAVVDK 397
++ VD+
Sbjct: 712 VTKSTVDE 719
Score = 154 (59.3 bits), Expect = 1.6e-36, Sum P(3) = 1.6e-36
Identities = 44/129 (34%), Positives = 63/129 (48%)
Query: 4 WQSELHKWLPSVSCIYYVGA-KDQRSRLFSQEVAALK---FNVLVTTYE-FIMY------ 52
W+ EL KW PS + + Y GA + SR + A K FNVL+ Y F +
Sbjct: 278 WERELRKWCPSFTVLQYHGAARAAYSRELNSLSKAGKPPPFNVLLVCYSLFERHSEQQKD 337
Query: 53 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY--RCQRRLLLTGTPLQNDXXXXXXX 110
DR L + W +++DEA +KD+ S ++L +RL+LTGTPLQND
Sbjct: 338 DRKVLKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSL 397
Query: 111 XXXXXPEVF 119
P++F
Sbjct: 398 LEFMLPDIF 406
Score = 106 (42.4 bits), Expect = 1.6e-36, Sum P(3) = 1.6e-36
Identities = 40/123 (32%), Positives = 57/123 (46%)
Query: 139 THNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPK---VSIVL--RCRMSA 193
T N D L + +I R+ IL PF+LRR DV L PK V VL R + A
Sbjct: 408 TENVDLKKLLNAEDTELITRMKSILGPFILRRLKSDVMQQLVPKIQRVEYVLMERKQEDA 467
Query: 194 IQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPY 253
+ AI ++ +A R+ K N + +A + ++N + RK NHPLL
Sbjct: 468 YKEAIEEY-RAASQARLVKLSSK---SLNSLAKALPKRQISNYFTQFRKIANHPLLIRRI 523
Query: 254 FSD 256
+SD
Sbjct: 524 YSD 526
>UNIPROTKB|Q12873 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0008270
"zinc ion binding" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007051 "spindle organization" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0051297 "centrosome organization" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0016581 "NuRD complex" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR001841
InterPro:IPR009071 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
EMBL:CH471108 GO:GO:0005730 GO:GO:0051297 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 Gene3D:1.10.30.10 GO:GO:0045111 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003
InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007051 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 EMBL:U91543 EMBL:AF006515 EMBL:U08379 IPI:IPI00373870
IPI:IPI00411592 RefSeq:NP_001005271.2 RefSeq:NP_001005273.1
RefSeq:NP_005843.2 UniGene:Hs.25601 ProteinModelPortal:Q12873
SMR:Q12873 DIP:DIP-32496N IntAct:Q12873 MINT:MINT-1185641
STRING:Q12873 PhosphoSite:Q12873 DMDM:88911273 PaxDb:Q12873
PRIDE:Q12873 Ensembl:ENST00000330494 Ensembl:ENST00000358181
GeneID:1107 KEGG:hsa:1107 UCSC:uc002gje.2 UCSC:uc002gjf.2
GeneCards:GC17P007788 H-InvDB:HIX0013516 HGNC:HGNC:1918
HPA:HPA043368 MIM:602120 neXtProt:NX_Q12873 PharmGKB:PA26454
HOVERGEN:HBG005326 KO:K11642 PhylomeDB:Q12873 ChiTaRS:CHD3
GenomeRNAi:1107 NextBio:4590 ArrayExpress:Q12873 Bgee:Q12873
CleanEx:HS_CHD3 Genevestigator:Q12873 GermOnline:ENSG00000170004
Uniprot:Q12873
Length = 2000
Score = 434 (157.8 bits), Expect = 1.6e-36, P = 1.6e-36
Identities = 165/567 (29%), Positives = 260/567 (45%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLVTTYEFIMYDRSKLSK 59
W+ E W P + Y G KD R+ + FS E A+K + + +
Sbjct: 800 WEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLL 859
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
++ I ID+A R + L D + +R + L N P
Sbjct: 860 TSYELITIDQAALGSIRWACLVVD-EAHRLKNNQSKFFRVL-NGYKIDHKLLLTGTPLQN 917
Query: 120 DNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 178
+ + FH F P ++ +++ + K+ I +LH +L P MLRR DV +
Sbjct: 918 NLEELFHLLNFLTP-ERFNNLEGFLEEFADISKEDQI-KKLHDLLGPHMLRRLKADVFKN 975
Query: 179 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 238
+P K +++R +S +Q Y +I L + E R N + +L N M
Sbjct: 976 MPAKTELIVRVELSPMQKKYYKYI-----LTRNFEALNSRGGGNQV-------SLLNIMM 1023
Query: 239 ELRKTCNHPLLNYPYFSDLSKDF---------LVKSCGKLWILDRILIKLQRTGHRVLLF 289
+L+K CNHP L +P + S L+KS GKL +L ++L KL+ GHRVL+F
Sbjct: 1024 DLKKCCNHPYL-FPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIF 1082
Query: 290 STMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRG 349
S MTK+LD+LE++L + Y RIDG + R+ AI FN+ + F FLLS RA G G
Sbjct: 1083 SQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLG 1142
Query: 350 LNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYMEAVVDKISSHQKEDE 406
+NL +ADTVII+D D NP N+ QA +RAHRIGQ +V + + +V ++I+ K
Sbjct: 1143 INLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKM 1202
Query: 407 LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRF---DQRTTHEER 463
+ + V L K GS+ ++I ++ + + N G D H +
Sbjct: 1203 MLTHLVV--RPGLGSK---AGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDN 1257
Query: 464 RMTLETLLHDEERYQETVHDVPSLQE------VNRMIARSEDEVELFDQMDEEFGWIEEM 517
L +++ ++T DV ++ E V + + R ED++E +++ E EE
Sbjct: 1258 EAIARLLDRNQDATEDT--DVQNMNEYLSSFKVAQYVVREEDKIE---EIEREIIKQEEN 1312
Query: 518 TRYDQVPKWLRASTKEVNATIA-NLSK 543
D K LR ++ +A NL K
Sbjct: 1313 VDPDYWEKLLRHHYEQQQEDLARNLGK 1339
>UNIPROTKB|E9PG89 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006333 "chromatin assembly or
disassembly" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IDA] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 GO:GO:0045111
GO:GO:0006333 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 RefSeq:NP_001005271.2 UniGene:Hs.25601 GeneID:1107
KEGG:hsa:1107 HGNC:HGNC:1918 KO:K11642 ChiTaRS:CHD3 GenomeRNAi:1107
NextBio:4590 EMBL:AC104581 IPI:IPI00465222
ProteinModelPortal:E9PG89 SMR:E9PG89 PRIDE:E9PG89
Ensembl:ENST00000380358 UCSC:uc002gjd.2 OMA:EPEPGYR
ArrayExpress:E9PG89 Bgee:E9PG89 Uniprot:E9PG89
Length = 2059
Score = 434 (157.8 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 165/567 (29%), Positives = 260/567 (45%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLVTTYEFIMYDRSKLSK 59
W+ E W P + Y G KD R+ + FS E A+K + + +
Sbjct: 859 WEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLL 918
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
++ I ID+A R + L D + +R + L N P
Sbjct: 919 TSYELITIDQAALGSIRWACLVVD-EAHRLKNNQSKFFRVL-NGYKIDHKLLLTGTPLQN 976
Query: 120 DNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 178
+ + FH F P ++ +++ + K+ I +LH +L P MLRR DV +
Sbjct: 977 NLEELFHLLNFLTP-ERFNNLEGFLEEFADISKEDQI-KKLHDLLGPHMLRRLKADVFKN 1034
Query: 179 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 238
+P K +++R +S +Q Y +I L + E R N + +L N M
Sbjct: 1035 MPAKTELIVRVELSPMQKKYYKYI-----LTRNFEALNSRGGGNQV-------SLLNIMM 1082
Query: 239 ELRKTCNHPLLNYPYFSDLSKDF---------LVKSCGKLWILDRILIKLQRTGHRVLLF 289
+L+K CNHP L +P + S L+KS GKL +L ++L KL+ GHRVL+F
Sbjct: 1083 DLKKCCNHPYL-FPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIF 1141
Query: 290 STMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRG 349
S MTK+LD+LE++L + Y RIDG + R+ AI FN+ + F FLLS RA G G
Sbjct: 1142 SQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLG 1201
Query: 350 LNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYMEAVVDKISSHQKEDE 406
+NL +ADTVII+D D NP N+ QA +RAHRIGQ +V + + +V ++I+ K
Sbjct: 1202 INLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKM 1261
Query: 407 LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRF---DQRTTHEER 463
+ + V L K GS+ ++I ++ + + N G D H +
Sbjct: 1262 MLTHLVV--RPGLGSK---AGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDN 1316
Query: 464 RMTLETLLHDEERYQETVHDVPSLQE------VNRMIARSEDEVELFDQMDEEFGWIEEM 517
L +++ ++T DV ++ E V + + R ED++E +++ E EE
Sbjct: 1317 EAIARLLDRNQDATEDT--DVQNMNEYLSSFKVAQYVVREEDKIE---EIEREIIKQEEN 1371
Query: 518 TRYDQVPKWLRASTKEVNATIA-NLSK 543
D K LR ++ +A NL K
Sbjct: 1372 VDPDYWEKLLRHHYEQQQEDLARNLGK 1398
>ZFIN|ZDB-GENE-041111-187 [details] [associations]
symbol:chd4a "chromodomain helicase DNA binding
protein 4a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-041111-187
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX004850
IPI:IPI00962864 Ensembl:ENSDART00000005453 ArrayExpress:F1QWV5
Bgee:F1QWV5 Uniprot:F1QWV5
Length = 1930
Score = 444 (161.4 bits), Expect = 2.8e-36, Sum P(2) = 2.8e-36
Identities = 176/628 (28%), Positives = 288/628 (45%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLVTTYEFIMYDRSKLSK 59
W+ E W P + + YVG KD R+ + FS E A++ + + + +
Sbjct: 774 WEREFEMWAPDMYVVTYVGDKDSRAVIRENEFSFENNAIRGGKKPSKMKKEASVKFHVLL 833
Query: 60 VDWKYIIIDEAQRMK-DRESVLARDLDRYRC-QRRL--LLTGTPLQNDXXXXXXXXXXXX 115
++ I ID A D ++ + R + Q + +L PLQ+
Sbjct: 834 TSYELITIDTAVLGSIDWACLVVDEAHRLKNNQSKFFRILNNYPLQHKLLLTGTPLQNNL 893
Query: 116 PEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDV 175
E+F F P ++ +++ + K+ I +LH +L P MLRR DV
Sbjct: 894 EELFHLLN-----FLTP-ERFSNLEGFLEEFADIAKEDQI-KKLHDMLGPHMLRRLKADV 946
Query: 176 EGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNN 235
+P K +++R +S +Q Y +I L + E R N + +L N
Sbjct: 947 FKHMPSKTELIVRVELSPMQKKYYKFI-----LTRNFEALNTRGGGNQV-------SLLN 994
Query: 236 RCMELRKTCNHPLLNYPYFS-DLSK--------DFLVKSCGKLWILDRILIKLQRTGHRV 286
M+L+K CNHP L +P + + +K L KS GKL +L ++L KL+ GHRV
Sbjct: 995 VVMDLKKCCNHPYL-FPAAAMEAAKMPNGMYEGGGLTKSSGKLLLLQKMLRKLKEGGHRV 1053
Query: 287 LLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 346
L+FS MTK+LD+LE++L+ Y RIDG + R+ AI FN+ + F+FLLS RA
Sbjct: 1054 LIFSQMTKMLDLLEDFLENEGYKYERIDGGITGGMRQEAIDRFNAPGAPQFVFLLSTRAG 1113
Query: 347 GRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYMEAVVDKISSHQK 403
G G+NL +ADTV+IYD D NP N+ QA +RAHRIGQ ++V + + +V ++I+ K
Sbjct: 1114 GLGINLATADTVVIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTKASVEERITQVAK 1173
Query: 404 EDELRSGGTVDLEDDLAGKDRYIGS--IEGLIRNNIQQYKIDMADEVINAGRFDQRTTHE 461
+ + + V L K + ++ +++ ++ D + G+ D H
Sbjct: 1174 KKMMLTHLVV--RPGLGSKTGSMSKQELDDILKFGTEELFKDEGEGENKEGQEDSSVIHY 1231
Query: 462 ERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSE-------DEVELFDQMDEEFGWI 514
+ + ++ LL +R Q+ D LQ +N ++ + DE E +++ E
Sbjct: 1232 DDK-AIDRLL---DRNQDATDDT-ELQSMNEYLSSFKVAQYVVKDEEEAEEEVQREIIKQ 1286
Query: 515 EEMTRYDQVPKWLRASTKEVNATIA-NLSKKPSKNILFGSNIGVDSGEIETERKRGPKGK 573
EE D K LR ++ +A NL K K I + + G E + +
Sbjct: 1287 EESVDPDYWEKLLRHHYEQQQEDLARNLGK--GKRIR--KQVNYNDGSQEDRDWQDDQSD 1342
Query: 574 KYPNY----KEVDDEIGEYSEASSDERN 597
+Y +E D++ E SEA+S N
Sbjct: 1343 GQSDYSVASEEGDEDFDERSEANSRRPN 1370
Score = 44 (20.5 bits), Expect = 2.8e-36, Sum P(2) = 2.8e-36
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 568 RGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPV 601
+G + +K NY + E ++ + SD ++ Y V
Sbjct: 1316 KGKRIRKQVNYNDGSQEDRDWQDDQSDGQSDYSV 1349
Score = 40 (19.1 bits), Expect = 7.4e-36, Sum P(2) = 7.4e-36
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 558 DSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPV 601
DS E +T+ PKG + KE D GE + ++ + PV
Sbjct: 1629 DSEE-KTDDTDKPKGSEAD--KETSDAKGEKKDDEPEKMDTTPV 1669
>UNIPROTKB|E2RTI2 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:AAEX03003635
EMBL:AAEX03003636 Ensembl:ENSCAFT00000026729 Uniprot:E2RTI2
Length = 1998
Score = 431 (156.8 bits), Expect = 3.4e-36, Sum P(2) = 3.4e-36
Identities = 164/567 (28%), Positives = 260/567 (45%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLVTTYEFIMYDRSKLSK 59
W+ E W P + Y G KD R+ + FS E A+K + + +
Sbjct: 798 WEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLL 857
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
++ I ID+A R + L D + +R + L N P
Sbjct: 858 TSYELITIDQAALGSIRWACLVVD-EAHRLKNNQSKFFRVL-NGYKIDHKLLLTGTPLQN 915
Query: 120 DNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 178
+ + FH F P ++ +++ + K+ I +LH +L P MLRR DV +
Sbjct: 916 NLEELFHLLNFLTP-ERFNNLEGFLEEFADISKEDQI-KKLHDLLGPHMLRRLKADVFKN 973
Query: 179 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 238
+P K +++R +S +Q Y +I L + E R N + +L N M
Sbjct: 974 MPAKTELIVRVELSPMQKKYYKYI-----LTRNFEALNSRGGGNQV-------SLLNIMM 1021
Query: 239 ELRKTCNHPLLNYPYFSDLSKDF---------LVKSCGKLWILDRILIKLQRTGHRVLLF 289
+L+K CNHP L +P + S L+K+ GKL +L ++L KL+ GHRVL+F
Sbjct: 1022 DLKKCCNHPYL-FPVAAMESPKLPSGAYEGGALIKASGKLMLLQKMLRKLKEQGHRVLIF 1080
Query: 290 STMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRG 349
S MTK+LD+LE++L + Y RIDG + R+ AI FN+ + F FLLS RA G G
Sbjct: 1081 SQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLG 1140
Query: 350 LNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYMEAVVDKISSHQKEDE 406
+NL +ADTVII+D D NP N+ QA +RAHRIGQ +V + + +V ++I+ K
Sbjct: 1141 INLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKM 1200
Query: 407 LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRF---DQRTTHEER 463
+ + V L K GS+ ++I ++ + + N G D H +
Sbjct: 1201 MLTHLVV--RPGLGSK---AGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDN 1255
Query: 464 RMTLETLLHDEERYQETVHDVPSLQE------VNRMIARSEDEVELFDQMDEEFGWIEEM 517
L +++ ++T DV ++ E V + + R ED++E +++ E EE
Sbjct: 1256 EAIARLLDRNQDATEDT--DVQNMNEYLSSFKVAQYVVREEDKIE---EIEREIIKQEEN 1310
Query: 518 TRYDQVPKWLRASTKEVNATIA-NLSK 543
D K LR ++ +A NL K
Sbjct: 1311 VDPDYWEKLLRHHYEQQQEDLARNLGK 1337
Score = 57 (25.1 bits), Expect = 3.4e-36, Sum P(2) = 3.4e-36
Identities = 23/99 (23%), Positives = 34/99 (34%)
Query: 762 RSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPS 821
+ T P +GD S P + D + + E GE D P+ L
Sbjct: 1552 KPATPAPSEKGDGSRTPLEKDEVENQEEKP--EKNRTGEKIETEADAPSPAPSLGERLEP 1609
Query: 822 RKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGK 860
RKI+ + G + PG+ D ES G+
Sbjct: 1610 RKISL--EEEVPGVPGEMEPEPGYRGDREKSATESTPGE 1646
>UNIPROTKB|F5H493 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0007256 "activation of JNKK
activity" evidence=IEA] [GO:0007257 "activation of JUN kinase
activity" evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IEA] [GO:0009636
"response to toxic substance" evidence=IEA] [GO:0010165 "response
to X-ray" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0003677 GO:GO:0009636 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
EMBL:AC073366 GO:GO:0006290 GO:GO:0007256 EMBL:AL138760
HGNC:HGNC:3438 ChiTaRS:ERCC6 GO:GO:0000303 IPI:IPI01012579
ProteinModelPortal:F5H493 SMR:F5H493 Ensembl:ENST00000542458
UCSC:uc009xod.3 ArrayExpress:F5H493 Bgee:F5H493 Uniprot:F5H493
Length = 863
Score = 414 (150.8 bits), Expect = 5.1e-36, Sum P(2) = 5.1e-36
Identities = 114/344 (33%), Positives = 179/344 (52%)
Query: 57 LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXP 116
+S+ DW Y+I+DE ++++ + + ++R R++L+G+P+QN+ P
Sbjct: 5 ISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFP 64
Query: 117 EVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVE 176
F + FS P G + NA ++T K + L + P++LRR DV+
Sbjct: 65 GKLGTLPVFMEQFSVPITMGGYS-NASPVQVKTAYKCACV--LRDTINPYLLRRMKSDVK 121
Query: 177 GSL--PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLN 234
SL P K VL CR++ Q +Y VD + E R+ + +++ L
Sbjct: 122 MSLSLPDKNEQVLFCRLTDEQHKVYQNF-------VDSK-EVYRILNG---EMQIFSGL- 169
Query: 235 NRCMELRKTCNHPLL------NYPYFSD--LSKD-F-LVKSCGKLWILDRILIKLQRTGH 284
+ LRK CNHP L N D L +D F K GK+ +++ +L + G
Sbjct: 170 ---IALRKICNHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQ 226
Query: 285 RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 344
RVLLFS ++LDILE +L+ ++ Y ++DGTT++ R+ I +N D+ F+FLL+ R
Sbjct: 227 RVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNE-DTSIFVFLLTTR 285
Query: 345 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
G G+NL A+ V+IYDPD NP + QA RA RIGQK++V V
Sbjct: 286 VGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTV 329
Score = 60 (26.2 bits), Expect = 5.1e-36, Sum P(2) = 5.1e-36
Identities = 23/90 (25%), Positives = 39/90 (43%)
Query: 811 PSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPG-HTEDAADHFKESWDGKIANASGSSN 869
P+ K R ++ +N S + C G ++ D+ E + G+ +A SS
Sbjct: 694 PAGKKSR-FGKKRNSNFSVQHPSSTSPTEKCQDGIMKKEGKDNVPEHFSGRAEDADSSSG 752
Query: 870 FSAKMSDVIQRRCKNVISKLQRRIEKE-GH 898
A S + + R +N + L R+E E GH
Sbjct: 753 PLASSSLLAKMRARNHLI-LPERLESESGH 781
>ASPGD|ASPL0000037473 [details] [associations]
symbol:AN2973 species:162425 "Emericella nidulans"
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0070870 "heterochromatin maintenance involved in chromatin
silencing" evidence=IEA] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0070869 "heterochromatin
assembly involved in chromatin silencing" evidence=IEA] [GO:0006348
"chromatin silencing at telomere" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031934 "mating-type region heterochromatin" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775 "chromosome,
centromeric region" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 EMBL:BN001306 EMBL:AACD01000051
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
RefSeq:XP_660577.1 ProteinModelPortal:Q5B907
EnsemblFungi:CADANIAT00010107 GeneID:2874181 KEGG:ani:AN2973.2
OMA:QQVGINW Uniprot:Q5B907
Length = 1107
Score = 261 (96.9 bits), Expect = 5.3e-36, Sum P(2) = 5.3e-36
Identities = 67/159 (42%), Positives = 98/159 (61%)
Query: 267 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 326
GK+ L +L + + G RVL+FS +DILE L+ + L + R+DGTTS+EDR+S I
Sbjct: 926 GKVDKLCELLRRFKENGDRVLVFSQFRLAMDILEVVLENQHLKFVRLDGTTSVEDRQS-I 984
Query: 327 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 386
+D ++D +FLLS +A G G+NL A+ VII+D NP+ + QA RAHR+GQ REV
Sbjct: 985 MDTFHENTDIPVFLLSTKAGGAGINLACANKVIIFDSSFNPQEDVQAENRAHRVGQTREV 1044
Query: 387 KVIYMEAVVDKISSHQKEDELRSGGTVDLEDD--LAGKD 423
+VI + D I E+++ + G L D +AG+D
Sbjct: 1045 EVIRL-VTKDTI-----EEQIYALGQTKLALDQAVAGED 1077
Score = 223 (83.6 bits), Expect = 5.3e-36, Sum P(2) = 5.3e-36
Identities = 67/201 (33%), Positives = 98/201 (48%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQ-EVAALKFNVLVTTYEFIM--YDRSKLSKV 60
W E K+ P++S + Y ++ R+++ Q E NV++TTY D L +
Sbjct: 627 WLREFQKFCPTLSVMPYYADQNVRAQIREQIEGNRDDINVVITTYTIAKGKVDAHFLRNM 686
Query: 61 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFD 120
D+ + DE +K SVL L R R + RLLLTGTPLQN+ P+VF
Sbjct: 687 DFCACVYDEGHMLKSSTSVLYEKLIRIRARFRLLLTGTPLQNNLQELASLLGFILPKVFQ 746
Query: 121 NRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
RK + FS + +H+A L ++ I R +L+PF+LRR+ V L
Sbjct: 747 ERKDDLQYIFSNKAKTVDESHSA---LLSAQR----IERAKSMLKPFVLRRKKHQVI-DL 798
Query: 180 PPKVSIVLRCRMSAIQSAIYD 200
P K+S V C M+A Q IY+
Sbjct: 799 PAKISRVEYCEMNAAQREIYE 819
Score = 112 (44.5 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 40/114 (35%), Positives = 56/114 (49%)
Query: 156 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 215
I R +L+PF+LRR+ V LP K+S V C M+A Q IY E E
Sbjct: 776 IERAKSMLKPFVLRRKKHQVI-DLPAKISRVEYCEMNAAQREIY-------------EHE 821
Query: 216 KRRVQKNPIYQAKVYKTLN---NRCMELRKTCNHPLLNYPYFSDLSKDFLVKSC 266
K V+K +A KT N N M+LR+ HPLL+ +++D + K+C
Sbjct: 822 KNEVKKLLEDRAAGKKTGNKSANILMKLRQAAIHPLLHRRHYNDKILTKMSKAC 875
>UNIPROTKB|F1N544 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:DAAA02048806
IPI:IPI00716282 Ensembl:ENSBTAT00000019119 ArrayExpress:F1N544
Uniprot:F1N544
Length = 1998
Score = 441 (160.3 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 165/567 (29%), Positives = 261/567 (46%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLVTTYEFIMYDRSKLSK 59
W+ E W P + Y G KD R+ + FS E A+K + + +
Sbjct: 796 WEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLL 855
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
++ I ID+A R + L D + +R + L N P
Sbjct: 856 TSYELITIDQAALGSIRWACLVVD-EAHRLKNNQSKFFRVL-NGYKIDHKLLLTGTPLQN 913
Query: 120 DNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 178
+ + FH F P ++ +++ + K+ I +LH +L P MLRR DV +
Sbjct: 914 NLEELFHLLNFLTP-ERFNNLEGFLEEFADISKEDQI-KKLHDLLGPHMLRRLKADVFKN 971
Query: 179 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 238
+P K +++R +S +Q Y +I L + E R N + +L N M
Sbjct: 972 MPAKTELIVRVELSPMQKKYYKYI-----LTRNFEALNSRGGGNQV-------SLLNIMM 1019
Query: 239 ELRKTCNHPLLNYPYFSDLSKDF---------LVKSCGKLWILDRILIKLQRTGHRVLLF 289
+L+K CNHP L +P + S L+K+ GKL +L ++L KL+ GHRVL+F
Sbjct: 1020 DLKKCCNHPYL-FPVAAMESPKLPSGAYEGGALIKASGKLMLLQKMLRKLKEQGHRVLIF 1078
Query: 290 STMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRG 349
S MTK+LD+LE++L + Y RIDG + R+ AI FN+H + F FLLS RA G G
Sbjct: 1079 SQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAHGAQQFCFLLSTRAGGLG 1138
Query: 350 LNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYMEAVVDKISSHQKEDE 406
+NL +ADTVII+D D NP N+ QA +RAHRIGQ +V + + +V ++I+ K
Sbjct: 1139 INLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKM 1198
Query: 407 LRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRF---DQRTTHEER 463
+ + V L K GS+ ++I ++ + + N G D H +
Sbjct: 1199 MLTHLVV--RPGLGSK---AGSMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDN 1253
Query: 464 RMTLETLLHDEERYQETVHDVPSLQE------VNRMIARSEDEVELFDQMDEEFGWIEEM 517
L +++ ++T DV ++ E V + + R ED++E +++ E EE
Sbjct: 1254 EAIARLLDRNQDATEDT--DVQNMNEYLSSFKVAQYVVREEDKIE---EIEREIIKQEEN 1308
Query: 518 TRYDQVPKWLRASTKEVNATIA-NLSK 543
D K LR ++ +A NL K
Sbjct: 1309 VDPDYWEKLLRHHYEQQQEDLARNLGK 1335
Score = 42 (19.8 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 19/68 (27%), Positives = 27/68 (39%)
Query: 761 ERSCTD-TPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNS--LRHD--QSEPSSKS 815
E+S T+ TP RG+ + Q + P D +A LR + EP S
Sbjct: 1635 EKSATESTPGERGEEKPMDGQEHRERPEGETGDLGKRAEDVKGDRELRSGPPRDEPRSNG 1694
Query: 816 RRNLPSRK 823
RR + K
Sbjct: 1695 RREEKAEK 1702
>UNIPROTKB|F1NH78 [details] [associations]
symbol:F1NH78 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02040929 EMBL:AADN02040930 IPI:IPI00571784
Ensembl:ENSGALT00000023340 ArrayExpress:F1NH78 Uniprot:F1NH78
Length = 1781
Score = 437 (158.9 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 174/617 (28%), Positives = 281/617 (45%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLVTTYEFIMYDRSKLSK 59
W+ E W P + Y G K+ RS + FS E A++ V + + +
Sbjct: 696 WEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEAQIKFHVLL 755
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
++ I ID+A + L D + +R + L N P
Sbjct: 756 TSYELITIDQAVLGSIEWACLVVD-EAHRLKNNQSKFFRVL-NSYKIDYKLLLTGTPLQN 813
Query: 120 DNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 178
+ + FH F P ++ +++ + K+ I +LH +L P MLRR DV +
Sbjct: 814 NLEELFHLLNFLTP-ERFNNLEGFLEEFADISKEDQI-KKLHDLLGPHMLRRLKADVFKN 871
Query: 179 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 238
+P K +++R +S +Q Y +I ++ + +V +L N M
Sbjct: 872 MPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQV------------SLLNIMM 919
Query: 239 ELRKTCNHPLL------NYPYFSDLSKD--FLVKSCGKLWILDRILIKLQRTGHRVLLFS 290
+L+K CNHP L P + S D LVKS GKL +L ++L KL+ GHRVL+FS
Sbjct: 920 DLKKCCNHPYLFPVAAVEAPVLPNGSYDGNSLVKSSGKLMLLQKMLKKLRDGGHRVLIFS 979
Query: 291 TMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGL 350
MTK+LD+LE++L++ Y RIDG + R+ AI FN+ + F FLLS RA G G+
Sbjct: 980 QMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGI 1039
Query: 351 NLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYMEAVVDKISSHQKEDEL 407
NL +ADTVIIYD D NP N+ QA +RAHRIGQ ++V + + +V ++I+ K +
Sbjct: 1040 NLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMM 1099
Query: 408 RSGGTVDLEDDLAGKDRYIGS--IEGLIRNNIQQ-YKIDMADEVI-NAGRFDQRTTHEER 463
+ V L K + ++ +++ ++ +K D+ V N D H +
Sbjct: 1100 LTHLVV--RPGLGSKSGSMTKQELDDILKFGTEELFKDDVEGGVSDNKDVDDSSVIHYDD 1157
Query: 464 RMTLETLLHDEERYQET----VHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTR 519
+ L +++ +T +++ S +V + + R ED V+ ++++ E EE
Sbjct: 1158 AAISKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVQ--EEVEREIIKQEENVD 1215
Query: 520 YDQVPKWLRASTKEVNATIA-NLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNY 578
D K LR ++ +A NL K K I N D+ + + E +
Sbjct: 1216 PDYWEKLLRHHYEQQQEDLARNLGK--GKRIRKQVNYN-DASQEDQEWQ----------- 1261
Query: 579 KEVDDEIGEYSEASSDE 595
E+ D EYS S DE
Sbjct: 1262 DELSDNQSEYSIGSEDE 1278
Score = 49 (22.3 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 568 RGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPV 601
+G + +K NY + E E+ + SD ++ Y +
Sbjct: 1240 KGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSI 1273
Score = 46 (21.3 bits), Expect = 1.1e-35, Sum P(3) = 1.1e-35
Identities = 25/109 (22%), Positives = 45/109 (41%)
Query: 725 WT-HDRDEGEDEQV----LQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPF 779
W H + G E+V Q + K ++ + E +E+ + L + +S+ P
Sbjct: 1522 WVLHIKVPGSTEKVESEEYQENCESKEKLKEEKQEENEGIQEK---EKALEKPESNSSPG 1578
Query: 780 QMDNKY--PAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIAN 826
+ ++K PA+ T E K E+ + E K RN+ R + N
Sbjct: 1579 KGEDKEVKPAE-DTKVEEKEQSETQQNGDKEEEDGKKDDRNVNFRFMFN 1626
>UNIPROTKB|F1SDB8 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:CU462855
Ensembl:ENSSSCT00000007340 Uniprot:F1SDB8
Length = 905
Score = 431 (156.8 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 156/492 (31%), Positives = 247/492 (50%)
Query: 129 FSQP--FQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIV 186
F +P F KE + + + EK+ L+++L+PF+LRR +V LP K +V
Sbjct: 221 FVEPDLFSKE-EVEDFVQRYEDIEKESESASELYKLLQPFLLRRVKAEVAAELPKKTEVV 279
Query: 187 LRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 246
+ MSA+Q Y KA L D E +N + AK K L N +LRK +H
Sbjct: 280 IYHGMSALQKKYY---KAI--LMKDLEISD--AFENEM--AKKVK-LQNVLSQLRKCVDH 329
Query: 247 PLLN---YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL 303
P L P ++ D L+++ GKL +LD++L L GHRVLLFS MT++LDIL++Y+
Sbjct: 330 PYLFDGVEPEPFEIG-DHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYM 388
Query: 304 QWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP 363
+R Y R+DG+ E+R AI +F FIFLLS RA G G+NL +ADTVI D
Sbjct: 389 DYRGYSYERVDGSVRGEERHLAIKNFGQQP--IFIFLLSTRAGGVGMNLTAADTVIFVDS 446
Query: 364 DPNPKNEEQAVARAHRIGQKREVKVIYM--EAVVDKISSHQKEDELRSGGTVDLEDD--L 419
D NP+N+ QA ARAHRIGQ + VKVI + V++I + +L+ T+ +E
Sbjct: 447 DFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIICRKAASKLKLTNTI-IEGGRFT 505
Query: 420 AGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQE 479
G R + L + I ++ +D +++++ + +T +E + LE++L + + Q
Sbjct: 506 LGAQRPAAEAD-LQLSEILKFGLD---KLLSS----EGSTMDE--IDLESILGETKDGQW 555
Query: 480 TVHDVPSLQEVNRMIARSEDEVELFDQMD-EEFGWIEEMTRYDQV---PKWLRASTKEVN 535
+PS +E +R ++ + LF+ D + E+ ++Q+ K L T +
Sbjct: 556 ISDALPSTEEGSREQEEGKNHMYLFEGKDYSKEPSKEDRKSFEQLVNLQKTLLEKTGQEG 615
Query: 536 ATIANLSKKPSKNILFGSNIG---VDSGEIETERKR----GPKGKKYPNYKEVDDEIGEY 588
+ N ++ GS + E+E RK+ K K+ K+ E E+
Sbjct: 616 RLLRNKGSVLIPGLVEGSTQRKRILSPEELEDRRKKRQEAAAKRKRLIEEKKRKKEEAEH 675
Query: 589 SEASSD-ERNGY 599
+ + E NGY
Sbjct: 676 KKKMAWWESNGY 687
Score = 273 (101.2 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 63/199 (31%), Positives = 103/199 (51%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W+ E+ + P + C+ Y G K++R+ L F+VL+TTYE + D S L
Sbjct: 109 LSNWKEEMERCAPGLCCVTYAGDKEERAHLQQDLKQESGFHVLLTTYEICLKDASFLKSF 168
Query: 61 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFD 120
W +++DEA R+K++ S+L + L + RLLLTGTP+QN P++F
Sbjct: 169 PWSVLVVDEAHRLKNQNSLLHKSLSEFSVAFRLLLTGTPIQNSLQELYSLLSFVEPDLF- 227
Query: 121 NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP 180
+++ D F Q ++ + EK+ L+++L+PF+LRR +V LP
Sbjct: 228 SKEEVED-FVQRYE-------------DIEKESESASELYKLLQPFLLRRVKAEVAAELP 273
Query: 181 PKVSIVLRCRMSAIQSAIY 199
K +V+ MSA+Q Y
Sbjct: 274 KKTEVVIYHGMSALQKKYY 292
Score = 40 (19.1 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 803 SLRHDQSEPSSKSRRNLP 820
S+ H Q+ SS SR+ +P
Sbjct: 888 SILHSQASSSSSSRQLVP 905
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 429 (156.1 bits), Expect = 1.3e-35, Sum P(2) = 1.3e-35
Identities = 106/254 (41%), Positives = 150/254 (59%)
Query: 144 DDWLE----TEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 199
D W + TE + +I +LH++L PF+LRR +VE SLPPK I L +S +Q
Sbjct: 462 DKWFDLANNTENQQEVIDKLHKVLRPFLLRRIKTEVEKSLPPKKEIKLFVGLSTMQK--- 518
Query: 200 DWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL-----NYPYF 254
+W K L D + + N +V L N CM+LRK CNHP L PY
Sbjct: 519 EWYKRL--LSKDLDAVVVGAKGNT---GRV--RLLNICMQLRKACNHPYLFDGAEEEPYT 571
Query: 255 SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRID 314
+ + L+ + GK+ +LD++L KL+ G RVL+FS M+++LDILE+Y+ +R Y RID
Sbjct: 572 TG---EHLIDNSGKMALLDKLLKKLKERGSRVLIFSQMSRMLDILEDYMLYRGYKYARID 628
Query: 315 GTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAV 374
G+T RE++I ++N SD F FLL+ RA G G+ L +AD VI++D D NP+ + QA
Sbjct: 629 GSTESIVRENSIENYNKPGSDLFAFLLTTRAGGLGITLNTADIVILFDSDWNPQMDLQAQ 688
Query: 375 ARAHRIGQKREVKV 388
RAHRIGQ + V V
Sbjct: 689 DRAHRIGQTKPVTV 702
Score = 320 (117.7 bits), Expect = 8.3e-24, Sum P(2) = 8.3e-24
Identities = 71/199 (35%), Positives = 108/199 (54%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W E +W P + + + G+K++R + ++ KF+V +TTYE + ++S K
Sbjct: 337 LSGWAKEFTRWCPFLRVVRFHGSKEEREDIKKNQLIFKKFDVCITTYEVAIREKSTFKKF 396
Query: 61 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFD 120
W+YIIIDEA R+K+ SVL++ + + Q RLL+TGTPLQN+ P+VF
Sbjct: 397 SWRYIIIDEAHRIKNENSVLSKGVRMFNSQFRLLITGTPLQNNLHELWSLLNFLLPDVFS 456
Query: 121 NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP 180
+ F WF +N TE + +I +LH++L PF+LRR +VE SLP
Sbjct: 457 SSDDFDKWFDL-------ANN-------TENQQEVIDKLHKVLRPFLLRRIKTEVEKSLP 502
Query: 181 PKVSIVLRCRMSAIQSAIY 199
PK I L +S +Q Y
Sbjct: 503 PKKEIKLFVGLSTMQKEWY 521
Score = 47 (21.6 bits), Expect = 1.3e-35, Sum P(2) = 1.3e-35
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 515 EEMTRYDQVPKWL-RASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGK 573
E R DQ+ K++ + +EV A +K K L + GV + + +TE GK
Sbjct: 1081 ELKARVDQLLKYIIKEHQEEVEAAKEAEKRKKEKEKLKLAASGVTASKAKTESPNKTLGK 1140
Query: 574 K 574
+
Sbjct: 1141 R 1141
Score = 41 (19.5 bits), Expect = 5.5e-35, Sum P(2) = 5.5e-35
Identities = 19/73 (26%), Positives = 31/73 (42%)
Query: 791 TDTEMKAHGESNSLRHDQSEPSSK--SRRNLPSRKIANAPKSRASLKT------GRLNCM 842
T ++ K + +L + P SK ++ + S K APKS+ S T GR
Sbjct: 1125 TASKAKTESPNKTLGKRKDAPPSKPPAKPSKASAKSKPAPKSKTSTTTKPTTTNGRGKKK 1184
Query: 843 PGHTEDAADHFKE 855
P E+ + +E
Sbjct: 1185 PVEEEEPMEEEEE 1197
>POMBASE|SPBC1826.01c [details] [associations]
symbol:mot1 "TATA-binding protein associated factor
Mot1 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0017025 "TBP-class
protein binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC1826.01c GO:GO:0005524 GO:GO:0005634
GO:GO:0043234 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0006355 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0016887 GO:GO:0006366 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0017025 EMBL:AB027981 PIR:T39739
RefSeq:NP_596080.2 ProteinModelPortal:O43065 STRING:O43065
EnsemblFungi:SPBC1826.01c.1 GeneID:2539633 KEGG:spo:SPBC1826.01c
OrthoDB:EOG44XNQZ NextBio:20800788 Uniprot:O43065
Length = 1953
Score = 296 (109.3 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 74/250 (29%), Positives = 120/250 (48%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
WQ EL + P + YVG +R+++ S+ K +V+VT+Y+ D +L K+DW
Sbjct: 1433 WQQELSTYAPFLKVSAYVGPPAERAKIRSK---MKKSDVVVTSYDICRNDVDELVKIDWN 1489
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y ++DE +K+ + L + + R RL+L+GTP+QN+ P K
Sbjct: 1490 YCVLDEGHVIKNARAKLTKAVKSLRSYHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEK 1549
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F + F +P + +A E E+ + + +H+ + PFMLRR EDV LPPK+
Sbjct: 1550 TFQERFVRPI---AASRDAKSSSKERERGTLALEAIHKQVLPFMLRRLKEDVLADLPPKI 1606
Query: 184 SIVLRCRMSAIQSAIY-DWIKATGTLRVDPEDEKRRVQ---KNPIYQAKVYKTLNNRCME 239
C MS +Q + D++ +DE + Q K +A +++ L
Sbjct: 1607 IQDYYCDMSDLQRKLLNDFVSQLNINEELEDDETEKTQGTRKKKSQKAHIFQALQY---- 1662
Query: 240 LRKTCNHPLL 249
+RK CNHP L
Sbjct: 1663 MRKLCNHPAL 1672
Score = 200 (75.5 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 46/108 (42%), Positives = 64/108 (59%)
Query: 284 HRVLLFSTMTKLLDILE-EYLQ--WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 340
HRVL+F + +LD++E + LQ + Y R+DG+ R+ A+ FN+ D + L
Sbjct: 1737 HRVLIFCQLKDMLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNN-DPSIDVLL 1795
Query: 341 LSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
L+ G GLNL ADTVI + D NP + QA+ RAHRIGQK+ V V
Sbjct: 1796 LTTHVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNV 1843
Score = 42 (19.8 bits), Expect = 1.4e-35, Sum P(3) = 1.4e-35
Identities = 17/85 (20%), Positives = 39/85 (45%)
Query: 427 GSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPS 486
G +E I +Q++K+++A V+N + ++ + L DE++ + + S
Sbjct: 1850 GCLEEKIMG-LQRFKMNVASTVVNQQNAGLSSIGTDQILDLFNTTADEQQTVQNIDKEES 1908
Query: 487 LQEVNRMIA-RSEDEVELFDQMDEE 510
R ++ S+ +E +M +E
Sbjct: 1909 EDAAGRGLSGTSKKALEGLPEMWDE 1933
>SGD|S000006003 [details] [associations]
symbol:MOT1 "Essential protein involved in regulation of
transcription" species:4932 "Saccharomyces cerevisiae" [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045898 "regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000006003 GO:GO:0005739 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0016887 EMBL:BK006949
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:U41849 GO:GO:0000228 GO:GO:0006364
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0042790 GO:GO:0045898 OrthoDB:EOG44XNQZ
EMBL:M83224 PIR:S22775 RefSeq:NP_015243.1 ProteinModelPortal:P32333
SMR:P32333 DIP:DIP-2418N IntAct:P32333 MINT:MINT-623118
STRING:P32333 PaxDb:P32333 PeptideAtlas:P32333 PRIDE:P32333
EnsemblFungi:YPL082C GeneID:856023 KEGG:sce:YPL082C CYGD:YPL082c
GeneTree:ENSGT00630000089754 NextBio:980935 Genevestigator:P32333
GermOnline:YPL082C Uniprot:P32333
Length = 1867
Score = 293 (108.2 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 87/292 (29%), Positives = 140/292 (47%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W++E ++ P + + Y G R L Q A +++VT+Y+ D + L+K ++
Sbjct: 1347 WENEFDQYAPFLKVVVYAGGPTVRLTLRPQLSDA---DIIVTSYDVARNDLAVLNKTEYN 1403
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
Y ++DE +K+ +S LA+ + RL+LTGTP+QN+ P K
Sbjct: 1404 YCVLDEGHIIKNSQSKLAKAVKEITANHRLILTGTPIQNNVLELWSLFDFLMPGFLGTEK 1463
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F + F++P + N+ E E V+ + LH+ + PFMLRR EDV LPPK+
Sbjct: 1464 MFQERFAKPI---AASRNSKTSSKEQEAGVLALEALHKQVLPFMLRRLKEDVLSDLPPKI 1520
Query: 184 SIVLRCRMSAIQSAIY-DWIKAT-GTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 241
C + +Q +Y D+ K + D E+ + K I+QA Y +R
Sbjct: 1521 IQDYYCELGDLQKQLYMDFTKKQKNVVEKDIENSEIADGKQHIFQALQY---------MR 1571
Query: 242 KTCNHPLL----NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLF 289
K CNHP L N+P + + +D+L K G L + D I+ + + R LLF
Sbjct: 1572 KLCNHPALVLSPNHPQLAQV-QDYL-KQTG-LDLHD-IINAPKLSALRTLLF 1619
Score = 205 (77.2 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 51/127 (40%), Positives = 72/127 (56%)
Query: 284 HRVLLFSTMTKLLDILEEYLQWRQL---VYRRIDGTTSLEDRESAIVDFNSHDS-DCFIF 339
HR L+F + +LD++E L + + Y R+DG+ DR+ + FN S DC
Sbjct: 1647 HRALIFCQLKDMLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCL-- 1704
Query: 340 LLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV---KVIYMEAVVD 396
LL+ + G GLNL ADTVI + D NP N+ QA+ RAHRIGQK+ V ++I + +
Sbjct: 1705 LLTTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLEE 1764
Query: 397 KISSHQK 403
KI QK
Sbjct: 1765 KIMGLQK 1771
Score = 39 (18.8 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 427 GSIEGLIRNNIQQYKIDMADEVIN 450
G++E I +Q++K+++A V+N
Sbjct: 1760 GTLEEKIMG-LQKFKMNIASTVVN 1782
Score = 37 (18.1 bits), Expect = 6.1e-09, Sum P(3) = 6.1e-09
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 178 SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVD 211
SL PK+ LR +S+++ A+ + + A +++ D
Sbjct: 545 SLVPKLYPFLRHSISSVRRAVLNLLIAFLSIKDD 578
>UNIPROTKB|F1NYG8 [details] [associations]
symbol:F1NYG8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 EMBL:AADN02067869 EMBL:AADN02067866
EMBL:AADN02067867 EMBL:AADN02067868 IPI:IPI00682975
Ensembl:ENSGALT00000020603 OMA:PEINICL Uniprot:F1NYG8
Length = 879
Score = 275 (101.9 bits), Expect = 1.7e-35, Sum P(3) = 1.7e-35
Identities = 64/155 (41%), Positives = 93/155 (60%)
Query: 240 LRKTCNHPLLNYPYFSDLSKDFLV------KSCGKLWILDRILIKLQRTGHRVLLFSTMT 293
+++ CN ++P F LSKD K GK+ +L ++L ++ +VLLFS T
Sbjct: 385 IKRVCNEVFSSFPDFMQLSKDAAFETISDPKYSGKMRVLQQLLNHFRKNKDKVLLFSFST 444
Query: 294 KLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ 353
KLLD+LE+Y L +RR+DG+T EDR + +FN + I L+S A G GLN
Sbjct: 445 KLLDVLEQYCIASGLDFRRLDGSTKSEDRIRIVREFN-RVPEINICLVSTMAGGLGLNFV 503
Query: 354 SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388
A+ VI++DP NP N+ QA+ RA+RIGQ ++VKV
Sbjct: 504 GANVVILFDPTWNPANDLQAIDRAYRIGQCKDVKV 538
Score = 208 (78.3 bits), Expect = 1.7e-35, Sum P(3) = 1.7e-35
Identities = 72/280 (25%), Positives = 126/280 (45%)
Query: 4 WQSELHKW-LPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDW 62
W+ EL W VS ++ G+K + + K V +TTYE + +L+ + W
Sbjct: 122 WKDELDTWGYFKVSVLH--GSKKEGDL---NRIKQGKCEVALTTYETLRLYLDELNNIGW 176
Query: 63 KYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNR 122
+I+DE R+K+ +S + + + +C R+ LTGT LQN+ P + +R
Sbjct: 177 SAVIVDEVHRIKNPKSQITQTMKSLKCNVRIGLTGTILQNNMNELWCVMDWAVPGLLGSR 236
Query: 123 KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPK 182
F FS P ++ G H A L T +K ++ +L + + + LRR + LP K
Sbjct: 237 VHFKKKFSDPLER-GQRHTATKRELATGRKAMV--KLARKMSSWFLRRTKVLISDQLPKK 293
Query: 183 VSIVLRCRMSAIQSAIYDWIKATG----TLRV-DP-EDEKRRVQKNPIYQ----AKVYKT 232
++ C ++ Q A+Y + T LR +P R++KN Y+ + K+
Sbjct: 294 EDRMVYCSLTEFQKAVYRAVLKTEDVSLVLRAREPCSCNSGRIRKNCCYKINSHGETVKS 353
Query: 233 LNNRCME-LRKTCNH-PLLNYPYFSDLSKDFLVKSCGKLW 270
L + L+K NH LL S + + + C +++
Sbjct: 354 LQLSYLTILQKVANHVALLQTDNTSKQQETHIKRVCNEVF 393
Score = 44 (20.5 bits), Expect = 6.7e-12, Sum P(2) = 6.7e-12
Identities = 22/86 (25%), Positives = 40/86 (46%)
Query: 477 YQETVHDVPSLQEVNRM--IARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEV 534
+ T + LQ ++R I + +D V++F + G +EEM +LR K++
Sbjct: 511 FDPTWNPANDLQAIDRAYRIGQCKD-VKVFRLIS--LGTVEEMM-------YLRQVYKQL 560
Query: 535 NATIANLSKKPSKNILFGSNIGVDSG 560
A I KK KN++ + + +G
Sbjct: 561 LAYIIQGQKKKKKNLVLSTAMSGRAG 586
Score = 43 (20.2 bits), Expect = 8.5e-12, Sum P(2) = 8.5e-12
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 851 DHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQ-RRIE 894
+HF+++ D K+ S FS K+ DV+++ C + S L RR++
Sbjct: 428 NHFRKNKD-KVLLFS----FSTKLLDVLEQYC--IASGLDFRRLD 465
Score = 41 (19.5 bits), Expect = 1.7e-35, Sum P(3) = 1.7e-35
Identities = 23/66 (34%), Positives = 26/66 (39%)
Query: 532 KEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEA 591
KE+ AT KK N S G DS I T KK P KE + + E
Sbjct: 704 KEIEAT-----KKSGNNDSHHS--GSDSQTIRTCLN----SKKKPRSKEKECDSHNIDEF 752
Query: 592 SSDERN 597
SS E N
Sbjct: 753 SSSEDN 758
>WB|WBGene00002637 [details] [associations]
symbol:let-418 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0048557 "embryonic digestive tract
morphogenesis" evidence=IGI] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0008134 "transcription
factor binding" evidence=IPI] [GO:0016581 "NuRD complex"
evidence=ISS] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 424 (154.3 bits), Expect = 1.7e-35, P = 1.7e-35
Identities = 131/421 (31%), Positives = 204/421 (48%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLVTTYEFIMYDRSKLSK 59
W+ E +W P + YVG +D R L FS A++ + + + +
Sbjct: 666 WEREAEQWCPDFYVVTYVGLRDARVVLREHEFSFVEGAVRSGPKASKMKTTENMKFHVLL 725
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
++ I +D+ L D + +R + L L N+ P
Sbjct: 726 TSYETINMDKTILSSIEWGALVVD-EAHRLKNNQSLFFKNL-NEYTIHYRVLLTGTPLQN 783
Query: 120 DNRKAFH--DWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG 177
+ + FH ++ S+ + A+ + + E + I +LH +L P MLRR DV
Sbjct: 784 NLEELFHLLNFLSKERFNQLEAFTAEFNEISKEDQ---IEKLHNLLGPHMLRRLKADVLT 840
Query: 178 SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 237
+P K +++R +SA+Q W K T D + K +L N
Sbjct: 841 GMPSKSELIVRVELSAMQKK---WYKNILTRNFDALNVKN---------GGTQMSLMNVL 888
Query: 238 MELRKTCNHPLLNYPYFSDLSKD--------FLVKSCGKLWILDRILIKLQRTGHRVLLF 289
MEL+K CNHP L + K+ L+K+ GK +L ++L KL+ GHRVL+F
Sbjct: 889 MELKKCCNHPYLFVKAELEAPKEKNGMYEGTALIKNSGKFVLLQKMLRKLKDGGHRVLIF 948
Query: 290 STMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRG 349
S MT++LDI+E+ ++ Y RIDG+ + R+ AI +N+ + FIFLLS RA G G
Sbjct: 949 SQMTRMLDIMEDLCEYEGYRYERIDGSIMGQMRQDAIDRYNAPGAQQFIFLLSTRAGGLG 1008
Query: 350 LNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYMEAVVDKISSHQKEDE 406
+NL +ADTVIIYD D NP N+ QA +RAHR+GQK +V + + ++V +KI+S K+
Sbjct: 1009 INLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKKSVEEKITSVAKKKM 1068
Query: 407 L 407
L
Sbjct: 1069 L 1069
>UNIPROTKB|G5EBZ4 [details] [associations]
symbol:let-418 "Protein let-418" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 424 (154.3 bits), Expect = 1.7e-35, P = 1.7e-35
Identities = 131/421 (31%), Positives = 204/421 (48%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLVTTYEFIMYDRSKLSK 59
W+ E +W P + YVG +D R L FS A++ + + + +
Sbjct: 666 WEREAEQWCPDFYVVTYVGLRDARVVLREHEFSFVEGAVRSGPKASKMKTTENMKFHVLL 725
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
++ I +D+ L D + +R + L L N+ P
Sbjct: 726 TSYETINMDKTILSSIEWGALVVD-EAHRLKNNQSLFFKNL-NEYTIHYRVLLTGTPLQN 783
Query: 120 DNRKAFH--DWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG 177
+ + FH ++ S+ + A+ + + E + I +LH +L P MLRR DV
Sbjct: 784 NLEELFHLLNFLSKERFNQLEAFTAEFNEISKEDQ---IEKLHNLLGPHMLRRLKADVLT 840
Query: 178 SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 237
+P K +++R +SA+Q W K T D + K +L N
Sbjct: 841 GMPSKSELIVRVELSAMQKK---WYKNILTRNFDALNVKN---------GGTQMSLMNVL 888
Query: 238 MELRKTCNHPLLNYPYFSDLSKD--------FLVKSCGKLWILDRILIKLQRTGHRVLLF 289
MEL+K CNHP L + K+ L+K+ GK +L ++L KL+ GHRVL+F
Sbjct: 889 MELKKCCNHPYLFVKAELEAPKEKNGMYEGTALIKNSGKFVLLQKMLRKLKDGGHRVLIF 948
Query: 290 STMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRG 349
S MT++LDI+E+ ++ Y RIDG+ + R+ AI +N+ + FIFLLS RA G G
Sbjct: 949 SQMTRMLDIMEDLCEYEGYRYERIDGSIMGQMRQDAIDRYNAPGAQQFIFLLSTRAGGLG 1008
Query: 350 LNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYMEAVVDKISSHQKEDE 406
+NL +ADTVIIYD D NP N+ QA +RAHR+GQK +V + + ++V +KI+S K+
Sbjct: 1009 INLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKKSVEEKITSVAKKKM 1068
Query: 407 L 407
L
Sbjct: 1069 L 1069
>UNIPROTKB|K7EMY3 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL031847 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AL035406
HGNC:HGNC:16816 Ensembl:ENST00000462991 Uniprot:K7EMY3
Length = 1060
Score = 427 (155.4 bits), Expect = 2.3e-35, Sum P(3) = 2.3e-35
Identities = 132/400 (33%), Positives = 198/400 (49%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLVTTYEFIMYDRSKLSK 59
W+ E W P + Y G K+ RS + FS E A++ V + + + +
Sbjct: 147 WEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLL 206
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
++ I ID+A + L D + +R + L N P
Sbjct: 207 TSYELITIDQAILGSIEWACLVVD-EAHRLKNNQSKFFRVL-NSYKIDYKLLLTGTPLQN 264
Query: 120 DNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 178
+ + FH F P ++ +++ + K+ I +LH +L P MLRR DV +
Sbjct: 265 NLEELFHLLNFLTP-ERFNNLEGFLEEFADISKEDQI-KKLHDLLGPHMLRRLKADVFKN 322
Query: 179 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 238
+P K +++R +S +Q Y +I ++ + +V +L N M
Sbjct: 323 MPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQV------------SLLNIMM 370
Query: 239 ELRKTCNHPLL------NYPYFSDLSKD--FLVKSCGKLWILDRILIKLQRTGHRVLLFS 290
+L+K CNHP L P + S D LVKS GKL +L ++L KL+ GHRVL+FS
Sbjct: 371 DLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFS 430
Query: 291 TMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGL 350
MTK+LD+LE++L++ Y RIDG + R+ AI FN+ + F FLLS RA G G+
Sbjct: 431 QMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGI 490
Query: 351 NLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 390
NL +ADTVIIYD D NP N+ QA +RAHRIGQ ++V +IY
Sbjct: 491 NLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKV-MIY 529
Score = 49 (22.3 bits), Expect = 2.3e-35, Sum P(3) = 2.3e-35
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 568 RGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPV 601
+G + +K NY + E E+ + SD ++ Y +
Sbjct: 724 KGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSI 757
Score = 42 (19.8 bits), Expect = 2.3e-35, Sum P(3) = 2.3e-35
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 455 DQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVE 502
+Q T + + L + Q V + ++EV R I + E+ V+
Sbjct: 652 NQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVD 699
Score = 41 (19.5 bits), Expect = 5.1e-35, Sum P(2) = 5.1e-35
Identities = 31/118 (26%), Positives = 49/118 (41%)
Query: 479 ETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATI 538
+ +++ S +V + + R ED VE +++ E EE D K LR ++ +
Sbjct: 662 QNMNEYLSSFKVAQYVVREEDGVE---EVEREIIKQEENVDPDYWEKLLRHHYEQQQEDL 718
Query: 539 A-NLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDE 595
A NL K K I N D+ + + E + E+ D EYS S DE
Sbjct: 719 ARNLGK--GKRIRKQVNYN-DASQEDQEWQ-----------DELSDNQSEYSIGSEDE 762
>POMBASE|SPBP35G2.10 [details] [associations]
symbol:mit1 "SHREC complex subunit Mit1" species:4896
"Schizosaccharomyces pombe" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000183 "chromatin silencing at rDNA" evidence=IMP] [GO:0000790
"nuclear chromatin" evidence=IC] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005721 "centromeric
heterochromatin" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006342 "chromatin silencing" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0019787 "small conjugating protein
ligase activity" evidence=ISM] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0031933 "telomeric
heterochromatin" evidence=IDA] [GO:0031934 "mating-type region
heterochromatin" evidence=IDA] [GO:0033553 "rDNA heterochromatin"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0070824 "SHREC complex" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00490 PomBase:SPBP35G2.10 Prosite:PS00518 GO:GO:0005524
GO:GO:0044732 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006338 GO:GO:0030466
GO:GO:0000122 GO:GO:0000790 GO:GO:0030702 GO:GO:0000183
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
GO:GO:0005721 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016584 GO:GO:0019787 GO:GO:0033553
GO:GO:0016581 GO:GO:0031933 RefSeq:NP_595385.1
ProteinModelPortal:Q9P793 STRING:Q9P793 EnsemblFungi:SPBP35G2.10.1
GeneID:2541336 KEGG:spo:SPBP35G2.10 OrthoDB:EOG4GQTD1
NextBio:20802445 Uniprot:Q9P793
Length = 1418
Score = 421 (153.3 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 159/610 (26%), Positives = 277/610 (45%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W+ EL KW P + VG++ RS + + K V+T+ ++ S V+ +
Sbjct: 619 WERELKKWAPFLQINVLVGSEKNRSLVRDYRLINQKDPKHVSTHVLVI----SASNVERE 674
Query: 64 YIIIDEAQ---RMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFD 120
++ + Q + D L D Q L + +++D P +
Sbjct: 675 ISLLRKFQWKVLIVDEGQRLKND------QSSLFYYLSSVKSDFKLLLTGT----PLQNN 724
Query: 121 NRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
R+ F+ F P + ++TEK + LHQIL+PF LRR +V +
Sbjct: 725 VRELFNLLQFLNPMKINAAELEKRYSIIDTEK----VTELHQILKPFFLRRVKSEVLDNF 780
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239
P KV +++ M+ +Q +Y I + + + + +LNN M+
Sbjct: 781 PTKVEVIIPLSMTPVQKGLYKSILSKNLSLLRNITGYANTSSSGGQRTT---SLNNILMQ 837
Query: 240 LRKTCNHPLLNYPYFSD--LSKDFLVKSCGKL---WILDRILI-KLQRTGHRVLLFSTMT 293
LRKT HP + P D L + ++S + +++ R+L+ KL GHR+LLFS
Sbjct: 838 LRKTLAHPYIYSPDIEDRNLPYELAMRSLEEASCKFLILRLLVPKLITRGHRILLFSQFI 897
Query: 294 KLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ 353
+ LDILE++ +++ + Y R DG +S +R+SAI FN+ +S+ FLLS RA G G+NL
Sbjct: 898 QQLDILEDWFEYKNIAYARFDGASSEMERQSAIDSFNAPNSELSCFLLSTRAGGVGINLA 957
Query: 354 SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM---EAVVDKISSHQKEDELRSG 410
SADTVII DPD NP + QA+ARAHR GQK++V V + ++V +KI + ++ +
Sbjct: 958 SADTVIILDPDFNPHQDMQAIARAHRYGQKKKVLVFVLTTRDSVEEKIIQNAQKKLVLDH 1017
Query: 411 GTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEV-INAGRFDQRTTHEERRMTLET 469
V+ D ++ +E ++R+ + + DE I + E +T
Sbjct: 1018 LIVESLDQNHNSEK---DLESILRHGARALFEEAGDEPSIKYNEYSVELLISEAEKQEDT 1074
Query: 470 LLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRA 529
DE + + + N+ I+ + EV+ +DEE W + + ++ A
Sbjct: 1075 ST-DESDIKSNKFGFFRVWD-NKHISSNHYEVKENVLVDEEDVWSVILKQREK-----DA 1127
Query: 530 STKEVNATIANLSKKPSKNILFGSNIGVDSGEIETE---RKRGPKGKKYPNYKEVDDEIG 586
++ + T +N + I +G ++ + +T+ R G +P E I
Sbjct: 1128 MLEKTDETTSNRRLRAHHKIHYGEDLNIYDNSDDTDYTVNDRSSPGSPFPIETET---IS 1184
Query: 587 EYSEASSDER 596
++ SD++
Sbjct: 1185 SITDTLSDKQ 1194
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 417 (151.9 bits), Expect = 2.5e-35, P = 2.5e-35
Identities = 151/492 (30%), Positives = 241/492 (48%)
Query: 129 FSQP--FQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIV 186
F +P F KE + + + EK+ L+++L+PF+LRR +V LP K +V
Sbjct: 221 FVEPDLFSKE-QVEDFVQRYQDIEKESESASELYKLLQPFLLRRVKAEVATELPRKTEVV 279
Query: 187 LRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 246
+ MSA+Q Y KA +D + + AK K L N +LRK +H
Sbjct: 280 IYHGMSALQKKYY---KAILMKDLDAFENE---------MAKKVK-LQNVLSQLRKCVDH 326
Query: 247 PLLN---YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL 303
P L P ++ D L+++ GKL +LD++L L GHRVLLFS MT++LDIL++YL
Sbjct: 327 PYLFDGVEPEPFEIG-DHLIEASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYL 385
Query: 304 QWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP 363
+R Y R+DG+ E+R AI +F F FL S RA G G+NL +ADTVI +D
Sbjct: 386 DYRGYSYERVDGSVRGEERHLAIKNFGQQP--IFTFL-STRAGGVGMNLTAADTVIFFDS 442
Query: 364 DPNPKNEEQAVARAHRIGQKREVKVIYM--EAVVDKISSHQKEDELRSGGTVDLEDDLAG 421
D NP+N+ QA ARAHRIGQ + VKVI + V++I + +L+ T+ + G
Sbjct: 443 DFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNTI-----IEG 497
Query: 422 KDRYIGSIEGLIRNNIQQYKIDM--ADEVINAGRFDQRTTHEERRMTLETLLHDEERYQE 479
+G+ + ++Q +I D+++++ + T HE + L+++L + E
Sbjct: 498 GHFTLGAQKPAADADLQLSEILKFGLDKLLSS---EGSTMHE---IDLKSILGETEDGHW 551
Query: 480 TVHDVPSLQEVNRMIARSEDEVELFDQMD-EEFGWIEEMTRYDQV---PKWLRASTKEVN 535
+P+ +E +R ++ + LF+ D + E+ ++Q+ K L T +
Sbjct: 552 VSDALPTAEEGSREPEEGKNHMYLFEGKDYSKEPSKEDRESFEQLVNLQKTLLEKTSQEG 611
Query: 536 ATIANLSKKPSKNILFGSNIG---VDSGEIETERKR----GPKGKKYPNYKEVDDEIGEY 588
+ N P ++ GS + E+E RKR K K+ K E E+
Sbjct: 612 RLLRNKGSVPIPGLVEGSTKRKRILSPEELEDRRKRRQEAAAKRKRLLEEKRKKKEEAEH 671
Query: 589 SEASSD-ERNGY 599
+ + E N Y
Sbjct: 672 KKKMAWWESNNY 683
Score = 277 (102.6 bits), Expect = 3.7e-20, P = 3.7e-20
Identities = 65/199 (32%), Positives = 105/199 (52%)
Query: 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 60
+S W+ E+ ++ P +SC+ Y G KD+R+ L +F+VL+TTYE + D S L
Sbjct: 109 LSNWKEEMERFAPGLSCVTYAGDKDKRACLQQDLKQESRFHVLLTTYEICLKDASFLKSF 168
Query: 61 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFD 120
W +++DEA R+K++ S+L + L + LLLTGTP+QN P++F
Sbjct: 169 PWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSFVEPDLF- 227
Query: 121 NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP 180
+++ D F Q +Q + EK+ L+++L+PF+LRR +V LP
Sbjct: 228 SKEQVED-FVQRYQ-------------DIEKESESASELYKLLQPFLLRRVKAEVATELP 273
Query: 181 PKVSIVLRCRMSAIQSAIY 199
K +V+ MSA+Q Y
Sbjct: 274 RKTEVVIYHGMSALQKKYY 292
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 434 (157.8 bits), Expect = 3.0e-35, Sum P(2) = 3.0e-35
Identities = 106/255 (41%), Positives = 154/255 (60%)
Query: 142 ADDDWL--ETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 199
A D W E + ++ +LH++L PF+LRR DVE SL PK + L +M+ +Q Y
Sbjct: 370 AFDQWFSGEGQDSDTVVQQLHRVLRPFLLRRVKADVEKSLLPKKEVNLYLKMTEMQRTWY 429
Query: 200 DWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL------NYPY 253
I V+ + KR ++K L N M+LRK CNHP L PY
Sbjct: 430 QKILEKDIDAVNGANGKR--------ESKT--RLLNIVMQLRKCCNHPYLFEGAEPGPPY 479
Query: 254 FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRI 313
+D + LV + GK+ +LD++L +L+ G RVL+FS M+++LDILE+Y +R+ Y RI
Sbjct: 480 TTD---EHLVYNSGKMVVLDKLLKRLKAQGSRVLIFSQMSRVLDILEDYCVFREYKYSRI 536
Query: 314 DGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQA 373
DG T+ EDR +AI ++N S+ F+FLL+ RA G G+NL +AD VI++D D NP+ + QA
Sbjct: 537 DGGTAHEDRIAAIDEYNKPGSEKFVFLLTTRAGGLGINLTTADIVILFDSDWNPQADLQA 596
Query: 374 VARAHRIGQKREVKV 388
+ RAHRIGQ ++V V
Sbjct: 597 MDRAHRIGQTKQVYV 611
Score = 338 (124.0 bits), Expect = 8.2e-25, Sum P(2) = 8.2e-25
Identities = 76/199 (38%), Positives = 113/199 (56%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W+ E KW P V+ + GAK++R+ L ++ + F+V +T+YE I+ ++S L K W+
Sbjct: 250 WKREFGKWTPEVNVLVLQGAKEERAALIAERLVDESFDVCITSYEMILREKSHLKKFAWE 309
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
YIIIDEA R+K+ ES LA+ + + + RLL+TGTPLQN+ P+VF + +
Sbjct: 310 YIIIDEAHRIKNEESSLAQVIRLFNSRNRLLITGTPLQNNIHELWALLNFLLPDVFGDSE 369
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
AF WFS EG D D ++ +LH++L PF+LRR DVE SL PK
Sbjct: 370 AFDQWFSG----EGQ----DSD--------TVVQQLHRVLRPFLLRRVKADVEKSLLPKK 413
Query: 184 SIVLRCRMSAIQSAIYDWI 202
+ L +M+ +Q Y I
Sbjct: 414 EVNLYLKMTEMQRTWYQKI 432
Score = 37 (18.1 bits), Expect = 3.0e-35, Sum P(2) = 3.0e-35
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 1156 GAVGWANPVKRLRTD 1170
GA W NP KR R +
Sbjct: 741 GA-NWINPAKRERKE 754
>UNIPROTKB|F1SSZ2 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:FP102454 Ensembl:ENSSSCT00000019561 Uniprot:F1SSZ2
Length = 1667
Score = 439 (159.6 bits), Expect = 3.2e-35, Sum P(4) = 3.2e-35
Identities = 175/619 (28%), Positives = 281/619 (45%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLVTTYEFIMYDRSKLSK 59
W+ E W P + Y G K+ RS + FS E A++ V + + + +
Sbjct: 680 WEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLL 739
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
++ I ID+A + L D + +R + L N P
Sbjct: 740 TSYELITIDQAILGSIEWACLVVD-EAHRLKNNQSKFFRVL-NSYKIDYKLLLTGTPLQN 797
Query: 120 DNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 178
+ + FH F P ++ +++ + K+ I +LH +L P MLRR DV +
Sbjct: 798 NLEELFHLLNFLTP-ERFNNLEGFLEEFADISKEDQI-KKLHDLLGPHMLRRLKADVFKN 855
Query: 179 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 238
+P K +++R +S +Q Y +I ++ + +V +L N M
Sbjct: 856 MPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQV------------SLLNIMM 903
Query: 239 ELRKTCNHPLL------NYPYFSDLSKD--FLVKSCGKLWILDRILIKLQRTGHRVLLFS 290
+L+K CNHP L P + S D LVKS GKL +L ++L KL+ GHRVL+FS
Sbjct: 904 DLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFS 963
Query: 291 TMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGL 350
MTK+LD+LE++L++ Y RIDG + R+ AI FN+ + F FLLS RA G G+
Sbjct: 964 QMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGI 1023
Query: 351 NLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYMEAVVDKISSHQKEDEL 407
NL +ADTVIIYD D NP N+ QA +RAHRIGQ ++V + + +V ++I+ K +
Sbjct: 1024 NLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMM 1083
Query: 408 RSGGTVDLEDDLAGKDRYIGS--IEGLIRNNIQQ-YKIDMADEVINAGRFDQRTTHEERR 464
+ V L K + ++ +++ ++ +K D+ + N D H +
Sbjct: 1084 LTHLVV--RPGLGSKSGSMTKQELDDILKFGTEELFKDDVEGD--NKDVEDSSVIHYDDA 1139
Query: 465 MTLETLLHDEERYQET----VHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRY 520
+ L +++ +T +++ S +V + + R ED VE +++ E EE
Sbjct: 1140 AISKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVE---EVEREIIKQEENVDP 1196
Query: 521 DQVPKWLRASTKEVNATIA-NLSKKPSKNILFGSNIGVDSGEI-ETERKRGPKGKKYPNY 578
D K LR ++ +A NL K K I N S E E + + +Y
Sbjct: 1197 DYWEKLLRHHYEQQQEDLARNLGK--GKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIG 1254
Query: 579 KEVDDE-IGEYSEASSDER 596
E +DE E E S R
Sbjct: 1255 SEDEDEDFEERPEGQSGRR 1273
Score = 49 (22.3 bits), Expect = 3.2e-35, Sum P(4) = 3.2e-35
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 568 RGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPV 601
+G + +K NY + E E+ + SD ++ Y +
Sbjct: 1220 KGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSI 1253
Score = 45 (20.9 bits), Expect = 3.2e-35, Sum P(4) = 3.2e-35
Identities = 27/100 (27%), Positives = 42/100 (42%)
Query: 677 PVSPQKFGSLSALEARPGSLSKRMP------DELEEGEIAVSGDSHMDHQQSGSWTHDRD 730
P PQK + L A G L + +P D+LE + ++ QQ+G D +
Sbjct: 1508 PPPPQK----TLLMAPVGLLKEVLPEKEKILDKLETDDTKAEEKEPIETQQNGDKEED-E 1562
Query: 731 EGEDEQVLQPKIKRKRSIR---VRPRHTVERPEERSCTDT 767
EG+ E K K +I HT+ + EER+ +
Sbjct: 1563 EGKKED-RNGKFKFMFNIADGGFTELHTLWQNEERAAVSS 1601
Score = 39 (18.8 bits), Expect = 3.2e-35, Sum P(4) = 3.2e-35
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 22 GAKDQRSRLFSQEVAALKF 40
G+KD + + ++VA LKF
Sbjct: 174 GSKDAKKKGKGRKVAGLKF 192
Score = 37 (18.1 bits), Expect = 4.5e-34, Sum P(3) = 4.5e-34
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 570 PKGKKYPNYKEVDDEIGEYSEASSDERNG 598
P+ +K + E DD E E ++NG
Sbjct: 1528 PEKEKILDKLETDDTKAEEKEPIETQQNG 1556
>DICTYBASE|DDB_G0281441 [details] [associations]
symbol:ercc6 "DNA excision repair protein 6"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0281441 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000152_GR GO:GO:0003677
EMBL:AAFI02000041 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0008094 KO:K10841
RefSeq:XP_640679.1 ProteinModelPortal:Q54TY2 STRING:Q54TY2
EnsemblProtists:DDB0232361 GeneID:8623063 KEGG:ddi:DDB_G0281441
InParanoid:Q54TY2 OMA:NIHKERW ProtClustDB:CLSZ2736745
Uniprot:Q54TY2
Length = 1655
Score = 438 (159.2 bits), Expect = 3.4e-35, Sum P(2) = 3.4e-35
Identities = 125/416 (30%), Positives = 206/416 (49%)
Query: 1 MSMWQSELHKWLPSVSC-IYYV-----GAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR 54
+S W E HKW P +++ G D + + A K ++L+TT++ I ++
Sbjct: 856 LSNWIKEFHKWWPPFRVGLFHSSGSGGGGNDGSDKEDIVKKIAEKGHILLTTFDSIRINQ 915
Query: 55 SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXX 114
L K W+Y+I+DE ++++ ++ + + + R++L+G+P+QN
Sbjct: 916 EILLKYHWEYVILDEGHKIRNPDAEITLSCKQLQTPHRVILSGSPIQNKLTELWSLFDFV 975
Query: 115 XPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVED 174
P F FS P G NA ++ K + L ++ P+MLRR D
Sbjct: 976 FPGRLGTLPIFKSQFSLPISVGGFA-NASPIQVQAAYKCAVA--LRDLISPYMLRRVKSD 1032
Query: 175 VEGSLPPKVSIVLRCRMSAIQSAIY-DWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTL 233
V SLP K VL C ++ Q +Y +++ + V D +R N +Y +
Sbjct: 1033 VLKSLPSKNEQVLMCPLTPFQEKLYLEFLDSNDIKSV--LDGRR----NALYGIDI---- 1082
Query: 234 NNRCMELRKTCNHPLLNYPYFSDLSK--DF-LVKSCGKLWILDRILIKLQRTGHRVLLFS 290
L+K CNHP + + SD + D+ ++ KL +++ IL + G +VLLF
Sbjct: 1083 ------LKKICNHPDILHMDASDEDRPHDYGNIERSAKLKVVETILPLWFKQGDKVLLFC 1136
Query: 291 TMTKLLDILEEYLQ-WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRG 349
++LDI+E+Y++ Q Y R+DGTTS+ R+ + FN D FIFLL+ + G G
Sbjct: 1137 QTRQMLDIVEQYIRDSTQFNYLRMDGTTSIRQRQCLVEQFNI-DPSLFIFLLTTKVGGLG 1195
Query: 350 LNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV---KVIYMEAVVDKISSHQ 402
LNL A+ VI++DPD NP + QA R +RIGQK+ V ++I + + +KI Q
Sbjct: 1196 LNLTGANRVILFDPDWNPSTDMQARERVYRIGQKKAVTIYRLITLGTIEEKIYHRQ 1251
Score = 38 (18.4 bits), Expect = 3.4e-35, Sum P(2) = 3.4e-35
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 796 KAHGESNSLRHDQSEPSSKSR 816
K G++N D+S+ SK R
Sbjct: 1339 KDDGDNNYSSSDESDSKSKKR 1359
>SGD|S000000017 [details] [associations]
symbol:FUN30 "Snf2p family member with ATP-dependent
chromatin remodeling activity" species:4932 "Saccharomyces
cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0070870
"heterochromatin maintenance involved in chromatin silencing"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=IMP] [GO:0031934 "mating-type region
heterochromatin" evidence=IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IMP] [GO:0006348 "chromatin silencing
at telomere" evidence=IMP] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0070869 "heterochromatin assembly
involved in chromatin silencing" evidence=IMP] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
SGD:S000000017 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0000775 EMBL:L05146 EMBL:BK006935 GO:GO:0003677 GO:GO:0003682
GO:GO:0030466 GO:GO:0000183 GO:GO:0006348 GO:GO:0004386
GO:GO:0031934 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0070869 GO:GO:0000729
GO:GO:0008094 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
PIR:S22266 RefSeq:NP_009383.1 ProteinModelPortal:P31380 SMR:P31380
DIP:DIP-2541N IntAct:P31380 MINT:MINT-425278 STRING:P31380
PaxDb:P31380 PeptideAtlas:P31380 EnsemblFungi:YAL019W GeneID:851214
KEGG:sce:YAL019W CYGD:YAL019w GeneTree:ENSGT00630000089890
OMA:KIEPYYG NextBio:968097 Genevestigator:P31380 GermOnline:YAL019W
GO:GO:0070870 Uniprot:P31380
Length = 1131
Score = 239 (89.2 bits), Expect = 3.6e-35, Sum P(2) = 3.6e-35
Identities = 66/170 (38%), Positives = 98/170 (57%)
Query: 239 ELRKTC-NHPLLNYPYFSDLSKDFLVKSCGKLWILDRIL--IKLQRTGHRVLLFSTMTKL 295
EL K C N P Y L D ++S GK+ L ++L I + + +VL+FS T++
Sbjct: 923 ELHKLCCNFPNTLSKY--QLHNDEWMQS-GKIDALKKLLKTIIVDKQ-EKVLIFSLFTQV 978
Query: 296 LDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA 355
LDILE L + R+DG+T + DR+ ++D D D IF+LS +A G G+NL A
Sbjct: 979 LDILEMVLSTLDYKFLRLDGSTQVNDRQ-LLIDKFYEDKDIPIFILSTKAGGFGINLVCA 1037
Query: 356 DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV---IYMEAVVDKISSHQ 402
+ VII+D NP ++ QA RAHR+GQ +EV + I +++ +KI HQ
Sbjct: 1038 NNVIIFDQSFNPHDDRQAADRAHRVGQTKEVNITTLITKDSIEEKI--HQ 1085
Score = 238 (88.8 bits), Expect = 3.6e-35, Sum P(2) = 3.6e-35
Identities = 77/258 (29%), Positives = 119/258 (46%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFS-QEVAALKFNVLVTTYEFIM---YDRSKLSK 59
W E K+ P++ Y G+ +R L E A K++V+VTTY YD S L
Sbjct: 635 WLREFQKFAPALKIEPYYGSLQEREELRDILERNAGKYDVIVTTYNLAAGNKYDVSFLKN 694
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
++ ++ DE +K+ S L + R RLLLTGTPLQN+ P +F
Sbjct: 695 RNFNVVVYDEGHMLKNSTSERFAKLMKIRANFRLLLTGTPLQNNLKELMSLLEFIMPNLF 754
Query: 120 DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSL 179
++K D + K + + L E I R +++PF+LRRR + V L
Sbjct: 755 ISKKESFDAIFKQRAKTTDDNKNHNPLLAQEA----ITRAKTMMKPFILRRRKDQVLKHL 810
Query: 180 PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLN-NRCM 238
PPK + + C ++AIQ IYD + L + + K+ ++K+ + + N M
Sbjct: 811 PPKHTHIQYCELNAIQKKIYDK-EIQIVLEHKRMIKDGELPKDAKEKSKLQSSSSKNLIM 869
Query: 239 ELRKTCNHPLLNYPYFSD 256
LRK HPLL ++D
Sbjct: 870 ALRKASLHPLLFRNIYND 887
Score = 45 (20.9 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 472 HDEERYQETVHDVPSLQEVNRMIARSEDEVE 502
HD+ + + H V +EVN ++D +E
Sbjct: 1050 HDDRQAADRAHRVGQTKEVNITTLITKDSIE 1080
>UNIPROTKB|F2Z2R5 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 EMBL:AL035406 HGNC:HGNC:16816
ChiTaRS:CHD5 IPI:IPI00444866 ProteinModelPortal:F2Z2R5 SMR:F2Z2R5
Ensembl:ENST00000496404 ArrayExpress:F2Z2R5 Bgee:F2Z2R5
Uniprot:F2Z2R5
Length = 1225
Score = 418 (152.2 bits), Expect = 3.9e-35, P = 3.9e-35
Identities = 129/394 (32%), Positives = 193/394 (48%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLVTTYEFIMYDRSKLSK 59
W+ E W P + Y G K+ RS + FS E A++ V + + + +
Sbjct: 764 WEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLL 823
Query: 60 VDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVF 119
++ I ID+A + L D + +R + L N P
Sbjct: 824 TSYELITIDQAILGSIEWACLVVD-EAHRLKNNQSKFFRVL-NSYKIDYKLLLTGTPLQN 881
Query: 120 DNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 178
+ + FH F P ++ +++ + K+ I +LH +L P MLRR DV +
Sbjct: 882 NLEELFHLLNFLTP-ERFNNLEGFLEEFADISKEDQI-KKLHDLLGPHMLRRLKADVFKN 939
Query: 179 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 238
+P K +++R +S +Q Y +I ++ + +V +L N M
Sbjct: 940 MPAKTELIVRVELSQMQKKYYKFILTRNFEALNSKGGGNQV------------SLLNIMM 987
Query: 239 ELRKTCNHPLL------NYPYFSDLSKD--FLVKSCGKLWILDRILIKLQRTGHRVLLFS 290
+L+K CNHP L P + S D LVKS GKL +L ++L KL+ GHRVL+FS
Sbjct: 988 DLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFS 1047
Query: 291 TMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGL 350
MTK+LD+LE++L++ Y RIDG + R+ AI FN+ + F FLLS RA G G+
Sbjct: 1048 QMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGI 1107
Query: 351 NLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 384
NL +ADTVIIYD D NP N+ QA +RAHRIGQ +
Sbjct: 1108 NLATADTVIIYDSDWNPHNDIQAFSRAHRIGQTK 1141
>UNIPROTKB|Q5T890 [details] [associations]
symbol:RAD26L "Putative DNA repair and recombination
protein RAD26-like" species:9606 "Homo sapiens" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005815
"microtubule organizing center" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006281
GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH471174 EMBL:AL161454
EMBL:BC035183 EMBL:BC140702 EMBL:AL389953 IPI:IPI00641648
IPI:IPI00873984 RefSeq:NP_001010895.1 UniGene:Hs.432364
UniGene:Hs.732570 ProteinModelPortal:Q5T890 SMR:Q5T890
IntAct:Q5T890 PhosphoSite:Q5T890 DMDM:74756405 PRIDE:Q5T890
DNASU:375748 Ensembl:ENST00000288985 Ensembl:ENST00000426805
Ensembl:ENST00000437817 GeneID:375748 KEGG:hsa:375748
UCSC:uc004avt.4 UCSC:uc010mrz.3 CTD:375748 HGNC:HGNC:26922
neXtProt:NX_Q5T890 PharmGKB:PA134961240 HOGENOM:HOG000074171
HOVERGEN:HBG108393 InParanoid:Q5T890 OMA:HGNRKDN OrthoDB:EOG41G33K
ChiTaRS:ERCC6L2 GenomeRNAi:375748 NextBio:100596
ArrayExpress:Q5T890 Bgee:Q5T890 CleanEx:HS_C9orf102
Genevestigator:Q5T890 Uniprot:Q5T890
Length = 712
Score = 277 (102.6 bits), Expect = 4.9e-35, Sum P(2) = 4.9e-35
Identities = 63/156 (40%), Positives = 93/156 (59%)
Query: 240 LRKTCNHPLLNYPYFSDLSKDFLV------KSCGKLWILDRILIKLQRTGHRVLLFSTMT 293
+++ C+ +P F SKD K GK+ +L ++L ++ +VLLFS T
Sbjct: 486 IKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRDKVLLFSFST 545
Query: 294 KLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ 353
KLLD+L++Y L YRR+DG+T E+R + +FNS D I L+S A G GLN
Sbjct: 546 KLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNS-TQDVNICLVSTMAGGLGLNFV 604
Query: 354 SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 389
A+ V+++DP NP N+ QA+ RA+RIGQ R+VKV+
Sbjct: 605 GANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVL 640
Score = 191 (72.3 bits), Expect = 4.9e-35, Sum P(2) = 4.9e-35
Identities = 70/279 (25%), Positives = 123/279 (44%)
Query: 4 WQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWK 63
W+ EL W + + KD + L V K + +TTYE + +L+ ++W
Sbjct: 223 WKDELDTWGYFRVTVLHGNRKD--NELI--RVKQRKCEIALTTYETLRLCLDELNSLEWS 278
Query: 64 YIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRK 123
+I+DEA R+K+ ++ + + +C R+ LTGT LQN+ P + +
Sbjct: 279 AVIVDEAHRIKNPKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGT 338
Query: 124 AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKV 183
F FS P + G H A L T +K + RL + + + LRR ++ LP K
Sbjct: 339 YFKKQFSDPVE-HGQRHTATKRELATGRKAM--QRLAKKMSGWFLRRTKTLIKDQLPKKE 395
Query: 184 SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEK----RRVQK--NPIYQAKVY----KTL 233
++ C ++ Q A+Y + T + + + + R QK N Y+ + KTL
Sbjct: 396 DRMVYCSLTDFQKAVYQTVLETEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTL 455
Query: 234 NNRCME-LRKTCNHPLLNYPYFSDLSKDFLVKS-CGKLW 270
+ L+K NH L + ++ L+K C +++
Sbjct: 456 YLSYLTVLQKVANHVALLQAASTSKQQETLIKRICDQVF 494
Score = 41 (19.5 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 869 NFSAKMSDVIQRRC 882
+FS K+ DV+Q+ C
Sbjct: 542 SFSTKLLDVLQQYC 555
Score = 38 (18.4 bits), Expect = 9.9e-10, Sum P(2) = 9.9e-10
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 860 KIANASG---SSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTD 906
K+AN +++ S + +I+R C V S+ ++K L+D
Sbjct: 465 KVANHVALLQAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSD 514
>CGD|CAL0000882 [details] [associations]
symbol:orf19.607 species:5476 "Candida albicans" [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000882 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000108 HOGENOM:HOG000170952 KO:K10841
RefSeq:XP_714234.1 ProteinModelPortal:Q59XB8 STRING:Q59XB8
GeneID:3644142 KEGG:cal:CaO19.607 Uniprot:Q59XB8
Length = 1055
Score = 412 (150.1 bits), Expect = 5.9e-35, Sum P(2) = 5.9e-35
Identities = 115/374 (30%), Positives = 193/374 (51%)
Query: 27 RSRLFSQEVAAL---KFNVLVTTYEFI-MYDRSKLSKVDWKYIIIDEAQRMKDRESVLAR 82
+S++ +QE+ K +VLVTTY + +Y + L + +W Y+++DE ++++ +S ++
Sbjct: 387 KSQINAQEIVDRVMEKGHVLVTTYVGLRIYSKHILPR-EWGYVVLDEGHKIRNPDSDISL 445
Query: 83 DLDRYRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNA 142
+ + R++L+GTP+QN+ P F FS P G N+
Sbjct: 446 TCKKIKTVNRIILSGTPIQNNLIELWSLFDFVFPGRLGTLPVFQQEFSIPINIGGYA-NS 504
Query: 143 DDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 202
++ ++T K ++ L ++ P+MLRR DV LP K +VL +++ IQ +Y+
Sbjct: 505 NNLQVKTAYKCAVV--LRDLISPYMLRRLKSDVAQDLPKKNEMVLFVKLTKIQQELYE-- 560
Query: 203 KATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF- 261
L+ + + + ++N + + LRK CNHP L Y K++
Sbjct: 561 ---SFLQSEDLESILKGKRNVLMGVDI----------LRKICNHPDLVYRDTLMKRKNYG 607
Query: 262 -LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV------YRRID 314
KS GK+ +L +L Q H+ LLF ++LDILE+++ L+ Y R+D
Sbjct: 608 DPAKS-GKMQVLKNLLRLWQSENHKTLLFCQTRQMLDILEKFVANLSLINGGDFNYLRMD 666
Query: 315 GTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAV 374
G+T + R+ + FN D D +FLL+ + G G+NL AD VIIYDPD NP + QA
Sbjct: 667 GSTPISKRQMLVDAFNQ-DPDMHVFLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDIQAR 725
Query: 375 ARAHRIGQKREVKV 388
RA R+GQKR++ +
Sbjct: 726 ERAWRLGQKRDITI 739
Score = 56 (24.8 bits), Expect = 5.9e-35, Sum P(2) = 5.9e-35
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 1 MSMWQSELHKWLPSVSCI 18
++ W +E H+W P + CI
Sbjct: 332 LNQWVNEFHRWWPPLRCI 349
WARNING: HSPs involving 302 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1179 1099 0.00087 123 3 11 22 0.43 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 552
No. of states in DFA: 628 (67 KB)
Total size of DFA: 523 KB (2240 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 109.11u 0.11s 109.22t Elapsed: 00:00:11
Total cpu time: 109.21u 0.11s 109.32t Elapsed: 00:00:12
Start: Fri May 10 00:01:19 2013 End: Fri May 10 00:01:31 2013
WARNINGS ISSUED: 2