Query 001037
Match_columns 1179
No_of_seqs 443 out of 2660
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 14:03:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0386 Chromatin remodeling c 100.0 3E-108 6E-113 980.8 37.3 663 1-984 456-1130(1157)
2 KOG0385 Chromatin remodeling c 100.0 2.5E-82 5.4E-87 741.4 38.3 437 1-499 229-670 (971)
3 KOG0384 Chromodomain-helicase 100.0 3.4E-73 7.3E-78 690.1 33.4 433 1-498 432-887 (1373)
4 PLN03142 Probable chromatin-re 100.0 1.5E-68 3.3E-73 671.2 43.3 438 1-502 231-672 (1033)
5 KOG0391 SNF2 family DNA-depend 100.0 5.6E-69 1.2E-73 640.6 33.9 415 1-473 677-1429(1958)
6 KOG0392 SNF2 family DNA-depend 100.0 7.7E-67 1.7E-71 631.0 35.6 423 2-472 1044-1495(1549)
7 KOG0389 SNF2 family DNA-depend 100.0 1.2E-66 2.7E-71 612.1 35.0 401 1-454 460-914 (941)
8 KOG0387 Transcription-coupled 100.0 4E-66 8.7E-71 608.7 38.0 399 1-451 267-681 (923)
9 KOG0388 SNF2 family DNA-depend 100.0 1.6E-65 3.4E-70 591.7 27.0 392 1-457 629-1183(1185)
10 KOG0390 DNA repair protein, SN 100.0 3.6E-53 7.8E-58 512.4 35.6 397 1-452 310-731 (776)
11 KOG1015 Transcription regulato 100.0 5.1E-51 1.1E-55 481.5 34.1 477 1-529 740-1381(1567)
12 KOG1002 Nucleotide excision re 100.0 1.6E-50 3.4E-55 455.2 25.2 395 1-451 243-772 (791)
13 KOG4439 RNA polymerase II tran 100.0 2.2E-50 4.7E-55 469.8 26.8 394 1-451 395-881 (901)
14 COG0553 HepA Superfamily II DN 100.0 5.8E-49 1.3E-53 497.4 32.9 406 1-451 402-845 (866)
15 KOG1016 Predicted DNA helicase 100.0 8.1E-42 1.8E-46 397.5 23.5 420 1-476 324-893 (1387)
16 PRK04914 ATP-dependent helicas 100.0 3.7E-41 7.9E-46 423.2 23.5 376 1-452 211-629 (956)
17 KOG1000 Chromatin remodeling p 100.0 3.1E-39 6.6E-44 365.5 26.2 361 2-447 254-622 (689)
18 KOG1001 Helicase-like transcri 100.0 1.8E-39 3.9E-44 395.5 19.0 384 1-448 201-670 (674)
19 KOG0383 Predicted helicase [Ge 100.0 9.8E-36 2.1E-40 358.7 11.3 316 1-349 357-696 (696)
20 TIGR00603 rad25 DNA repair hel 99.9 2.4E-26 5.2E-31 281.9 28.7 276 1-393 311-605 (732)
21 PF00176 SNF2_N: SNF2 family N 99.9 2.4E-27 5.1E-32 264.0 17.5 222 1-249 70-298 (299)
22 PRK13766 Hef nuclease; Provisi 99.9 2E-24 4.4E-29 272.8 30.0 367 2-393 72-477 (773)
23 KOG0298 DEAD box-containing he 99.9 6.6E-25 1.4E-29 270.8 16.0 228 1-249 432-690 (1394)
24 cd05524 Bromo_polybromo_I Brom 99.9 1.2E-23 2.6E-28 205.6 10.6 109 878-987 3-111 (113)
25 cd05525 Bromo_ASH1 Bromodomain 99.9 1.8E-23 4E-28 202.0 11.0 103 877-980 2-104 (106)
26 cd05515 Bromo_polybromo_V Brom 99.9 3.6E-23 7.9E-28 199.8 10.1 104 878-982 1-104 (105)
27 cd05517 Bromo_polybromo_II Bro 99.9 4.9E-23 1.1E-27 198.1 10.4 100 879-979 2-101 (103)
28 cd05516 Bromo_SNF2L2 Bromodoma 99.9 1.1E-22 2.5E-27 197.0 10.7 105 878-983 2-106 (107)
29 cd05518 Bromo_polybromo_IV Bro 99.9 1.1E-22 2.3E-27 195.8 9.9 101 879-980 2-102 (103)
30 cd05521 Bromo_Rsc1_2_I Bromodo 99.9 5.2E-22 1.1E-26 191.8 10.0 102 878-982 2-103 (106)
31 cd05519 Bromo_SNF2 Bromodomain 99.9 1.1E-21 2.3E-26 188.9 10.6 102 878-980 1-102 (103)
32 cd05520 Bromo_polybromo_III Br 99.8 3.2E-21 7E-26 185.6 9.4 98 882-980 5-102 (103)
33 PHA02558 uvsW UvsW helicase; P 99.8 2.2E-19 4.7E-24 216.9 25.9 125 267-393 328-453 (501)
34 COG1111 MPH1 ERCC4-like helica 99.8 6.9E-19 1.5E-23 203.5 27.7 123 265-393 346-479 (542)
35 COG1061 SSL2 DNA or RNA helica 99.8 3.2E-19 7E-24 212.1 23.1 290 1-392 93-389 (442)
36 cd05522 Bromo_Rsc1_2_II Bromod 99.8 2.1E-20 4.6E-25 180.3 10.4 101 878-979 2-102 (104)
37 cd05502 Bromo_tif1_like Bromod 99.8 5E-19 1.1E-23 172.2 11.3 106 874-987 1-109 (109)
38 smart00297 BROMO bromo domain. 99.8 1.1E-18 2.3E-23 168.2 10.3 104 877-983 3-106 (107)
39 cd05526 Bromo_polybromo_VI Bro 99.8 1.6E-18 3.5E-23 167.6 11.3 105 876-983 2-106 (110)
40 PTZ00110 helicase; Provisional 99.8 5.9E-17 1.3E-21 197.6 24.6 119 268-389 362-480 (545)
41 cd05505 Bromo_WSTF_like Bromod 99.7 2.6E-18 5.7E-23 163.7 8.7 95 880-981 3-97 (97)
42 TIGR00614 recQ_fam ATP-depende 99.7 1.5E-16 3.3E-21 190.9 23.9 107 282-391 225-331 (470)
43 PRK11776 ATP-dependent RNA hel 99.7 2.3E-16 4.9E-21 188.7 24.8 115 268-387 229-343 (460)
44 cd05504 Bromo_Acf1_like Bromod 99.7 1.4E-17 3E-22 163.5 10.2 101 877-984 12-112 (115)
45 PRK11192 ATP-dependent RNA hel 99.7 8.8E-16 1.9E-20 182.2 25.2 117 268-389 232-348 (434)
46 cd05499 Bromo_BDF1_2_II Bromod 99.7 2E-17 4.4E-22 159.0 9.2 98 880-981 3-102 (102)
47 PRK10590 ATP-dependent RNA hel 99.7 5.1E-16 1.1E-20 185.7 23.3 104 283-389 245-348 (456)
48 PRK04537 ATP-dependent RNA hel 99.7 5.8E-16 1.3E-20 189.8 24.1 115 268-387 244-358 (572)
49 cd05510 Bromo_SPT7_like Bromod 99.7 3.6E-17 7.7E-22 159.8 10.5 106 875-987 5-111 (112)
50 cd05496 Bromo_WDR9_II Bromodom 99.7 2.4E-17 5.2E-22 162.5 9.4 104 876-986 4-108 (119)
51 PRK04837 ATP-dependent RNA hel 99.7 4.6E-16 9.9E-21 184.2 22.1 114 268-386 242-355 (423)
52 cd05498 Bromo_Brdt_II_like Bro 99.7 2.5E-17 5.3E-22 158.4 9.1 99 878-980 1-101 (102)
53 PLN00206 DEAD-box ATP-dependen 99.7 1.1E-15 2.4E-20 185.5 23.7 115 271-388 355-470 (518)
54 cd05509 Bromo_gcn5_like Bromod 99.7 7.3E-17 1.6E-21 154.8 9.9 99 878-983 2-100 (101)
55 cd05503 Bromo_BAZ2A_B_like Bro 99.7 6.3E-17 1.4E-21 154.4 9.2 94 880-980 3-96 (97)
56 cd05495 Bromo_cbp_like Bromodo 99.7 1E-16 2.2E-21 155.8 10.4 104 875-984 1-106 (108)
57 PRK11634 ATP-dependent RNA hel 99.7 4.4E-15 9.5E-20 183.6 27.5 117 268-389 232-348 (629)
58 PRK01297 ATP-dependent RNA hel 99.7 1.9E-15 4.2E-20 181.5 23.5 116 268-388 322-437 (475)
59 cd05497 Bromo_Brdt_I_like Brom 99.7 1.2E-16 2.5E-21 155.1 10.2 103 875-984 3-107 (107)
60 TIGR01389 recQ ATP-dependent D 99.7 2.3E-15 5E-20 185.5 24.2 104 283-389 224-327 (591)
61 PRK11057 ATP-dependent DNA hel 99.7 2.5E-15 5.4E-20 185.7 24.2 105 282-389 235-339 (607)
62 cd05529 Bromo_WDR9_I_like Brom 99.7 1.4E-16 3E-21 159.4 10.7 107 873-983 20-127 (128)
63 cd05507 Bromo_brd8_like Bromod 99.7 1.3E-16 2.9E-21 154.0 10.1 100 877-983 3-102 (104)
64 KOG0331 ATP-dependent RNA heli 99.7 2.1E-15 4.6E-20 178.6 21.4 120 267-389 324-444 (519)
65 KOG0354 DEAD-box like helicase 99.7 2.9E-14 6.3E-19 173.6 31.5 119 265-387 393-524 (746)
66 cd05500 Bromo_BDF1_2_I Bromodo 99.7 2.2E-16 4.9E-21 152.1 10.3 101 874-981 1-103 (103)
67 KOG1123 RNA polymerase II tran 99.7 2.2E-15 4.8E-20 172.6 17.8 276 1-393 358-651 (776)
68 cd05501 Bromo_SP100C_like Brom 99.6 5E-16 1.1E-20 148.8 9.8 97 879-985 4-100 (102)
69 cd00079 HELICc Helicase superf 99.6 7.9E-16 1.7E-20 150.3 11.5 120 267-389 12-131 (131)
70 cd04369 Bromodomain Bromodomai 99.6 7.1E-16 1.5E-20 144.5 9.4 97 879-980 2-98 (99)
71 cd05511 Bromo_TFIID Bromodomai 99.6 5.5E-16 1.2E-20 151.6 8.9 95 883-984 6-100 (112)
72 cd05508 Bromo_RACK7 Bromodomai 99.6 6.8E-16 1.5E-20 147.7 8.9 96 878-981 4-99 (99)
73 cd05528 Bromo_AAA Bromodomain; 99.6 1E-15 2.2E-20 149.7 10.2 103 878-987 4-110 (112)
74 cd05506 Bromo_plant1 Bromodoma 99.6 6.8E-16 1.5E-20 147.6 8.6 95 879-980 2-98 (99)
75 cd05512 Bromo_brd1_like Bromod 99.6 8.1E-16 1.8E-20 147.0 8.9 91 879-976 3-93 (98)
76 PTZ00424 helicase 45; Provisio 99.6 2.3E-14 4.9E-19 167.9 22.6 106 283-393 267-372 (401)
77 cd05513 Bromo_brd7_like Bromod 99.6 9.4E-16 2E-20 146.4 8.1 91 879-976 3-93 (98)
78 TIGR00643 recG ATP-dependent D 99.6 5.8E-14 1.3E-18 174.3 25.1 107 281-390 446-563 (630)
79 PRK10917 ATP-dependent DNA hel 99.6 8.8E-14 1.9E-18 174.0 23.0 107 280-389 468-585 (681)
80 PLN03137 ATP-dependent DNA hel 99.6 6.1E-14 1.3E-18 177.4 21.5 106 283-391 680-785 (1195)
81 PF00439 Bromodomain: Bromodom 99.6 5.2E-15 1.1E-19 136.4 8.0 84 882-972 1-84 (84)
82 TIGR00580 mfd transcription-re 99.6 1.2E-13 2.7E-18 176.1 23.0 105 282-389 659-766 (926)
83 COG0513 SrmB Superfamily II DN 99.6 1.4E-13 3.1E-18 166.9 22.0 113 268-385 260-372 (513)
84 KOG0330 ATP-dependent RNA heli 99.5 1.4E-13 3E-18 155.1 18.7 119 268-393 287-405 (476)
85 PRK10689 transcription-repair 99.5 1.9E-13 4E-18 177.8 22.8 105 282-389 808-915 (1147)
86 COG5076 Transcription factor i 99.5 1.1E-14 2.3E-19 170.1 8.9 110 877-987 142-251 (371)
87 PRK13767 ATP-dependent helicas 99.5 5.1E-13 1.1E-17 171.1 23.7 113 275-390 276-395 (876)
88 cd05492 Bromo_ZMYND11 Bromodom 99.5 8.8E-14 1.9E-18 135.1 9.1 93 888-981 11-103 (109)
89 PF00271 Helicase_C: Helicase 99.5 5.8E-14 1.3E-18 127.2 7.4 78 301-381 1-78 (78)
90 TIGR03817 DECH_helic helicase/ 99.5 3.1E-12 6.7E-17 161.2 24.3 106 278-386 266-379 (742)
91 TIGR01587 cas3_core CRISPR-ass 99.5 3.3E-12 7.1E-17 147.8 21.6 110 268-384 208-323 (358)
92 KOG0328 Predicted ATP-dependen 99.4 2.1E-12 4.6E-17 140.4 17.1 119 268-393 253-371 (400)
93 KOG1474 Transcription initiati 99.4 1.1E-12 2.4E-17 162.2 16.6 120 868-994 213-334 (640)
94 PRK11448 hsdR type I restricti 99.4 2.2E-11 4.7E-16 158.4 24.0 107 283-393 698-816 (1123)
95 KOG0343 RNA Helicase [RNA proc 99.4 1.8E-11 3.8E-16 142.8 20.6 120 267-391 299-420 (758)
96 PRK09751 putative ATP-dependen 99.4 1.9E-11 4E-16 160.7 23.5 96 282-380 243-371 (1490)
97 PRK09200 preprotein translocas 99.4 9.8E-11 2.1E-15 146.5 28.0 131 264-401 409-547 (790)
98 PRK02362 ski2-like helicase; P 99.4 4.6E-11 1E-15 151.2 24.1 109 281-392 241-394 (737)
99 smart00490 HELICc helicase sup 99.3 2.1E-12 4.6E-17 115.9 8.0 81 298-381 2-82 (82)
100 KOG0326 ATP-dependent RNA heli 99.3 4.6E-12 1E-16 139.7 11.9 134 266-406 307-440 (459)
101 COG0514 RecQ Superfamily II DN 99.3 2.9E-11 6.2E-16 146.2 19.7 234 23-391 92-335 (590)
102 TIGR03714 secA2 accessory Sec 99.3 9.5E-11 2.1E-15 145.6 24.4 130 263-400 404-542 (762)
103 KOG0342 ATP-dependent RNA heli 99.3 5.4E-11 1.2E-15 137.9 19.5 116 267-386 315-430 (543)
104 KOG0345 ATP-dependent RNA heli 99.3 1.1E-10 2.3E-15 134.7 20.2 121 266-391 240-362 (567)
105 PRK01172 ski2-like helicase; P 99.3 2.3E-10 5.1E-15 143.5 24.4 106 276-385 229-368 (674)
106 PRK12898 secA preprotein trans 99.3 2.9E-10 6.3E-15 139.7 24.4 129 265-400 455-591 (656)
107 TIGR02621 cas3_GSU0051 CRISPR- 99.3 2.6E-10 5.7E-15 142.9 24.3 101 281-386 270-383 (844)
108 KOG4284 DEAD box protein [Tran 99.3 7.3E-11 1.6E-15 139.3 18.0 257 5-391 110-376 (980)
109 KOG0333 U5 snRNP-like RNA heli 99.3 1.1E-11 2.5E-16 143.8 11.0 123 263-390 499-621 (673)
110 PRK00254 ski2-like helicase; P 99.3 2.4E-10 5.3E-15 144.4 22.9 81 309-392 297-385 (720)
111 TIGR00963 secA preprotein tran 99.2 6.9E-11 1.5E-15 146.0 14.6 128 266-400 388-522 (745)
112 COG1200 RecG RecG-like helicas 99.2 7.6E-10 1.7E-14 134.0 22.9 244 3-390 326-588 (677)
113 KOG0339 ATP-dependent RNA heli 99.2 8.2E-10 1.8E-14 128.0 20.4 120 268-393 454-573 (731)
114 KOG0350 DEAD-box ATP-dependent 99.2 1.3E-10 2.9E-15 134.6 12.9 112 270-386 418-533 (620)
115 KOG0332 ATP-dependent RNA heli 99.2 1.5E-10 3.3E-15 130.3 12.7 114 268-386 317-436 (477)
116 KOG0335 ATP-dependent RNA heli 99.2 5.5E-10 1.2E-14 131.3 17.7 105 284-391 338-442 (482)
117 COG1201 Lhr Lhr-like helicases 99.2 7.4E-10 1.6E-14 138.4 19.6 113 274-389 244-358 (814)
118 KOG0338 ATP-dependent RNA heli 99.2 6E-10 1.3E-14 129.3 16.7 109 272-385 417-525 (691)
119 TIGR03158 cas3_cyano CRISPR-as 99.1 3.1E-09 6.8E-14 123.9 20.7 85 282-378 271-357 (357)
120 KOG0336 ATP-dependent RNA heli 99.1 7.8E-10 1.7E-14 125.4 14.7 116 267-386 450-565 (629)
121 TIGR00348 hsdR type I site-spe 99.1 5.3E-09 1.2E-13 131.0 23.7 108 283-393 514-649 (667)
122 KOG1827 Chromatin remodeling c 99.1 1.6E-10 3.6E-15 139.0 9.8 120 875-995 50-175 (629)
123 PRK09401 reverse gyrase; Revie 99.1 4.4E-09 9.5E-14 137.9 21.4 103 268-380 316-431 (1176)
124 PHA02653 RNA helicase NPH-II; 99.0 1.4E-08 3.1E-13 126.5 21.9 105 282-393 394-512 (675)
125 TIGR00595 priA primosomal prot 99.0 2E-08 4.4E-13 122.0 22.5 93 296-391 271-379 (505)
126 KOG1245 Chromatin remodeling c 99.0 6.5E-10 1.4E-14 145.9 8.0 98 882-987 1306-1403(1404)
127 COG4096 HsdR Type I site-speci 99.0 1.1E-08 2.4E-13 125.5 18.0 122 268-392 405-545 (875)
128 PRK13104 secA preprotein trans 99.0 4.2E-08 9.2E-13 123.4 22.6 131 264-401 425-593 (896)
129 TIGR01970 DEAH_box_HrpB ATP-de 99.0 1.3E-08 2.8E-13 129.4 18.4 105 283-393 209-334 (819)
130 KOG0341 DEAD-box protein abstr 98.9 1.7E-09 3.7E-14 121.9 9.1 120 264-389 405-524 (610)
131 PRK12906 secA preprotein trans 98.9 3.3E-08 7.1E-13 123.7 21.2 129 265-400 422-558 (796)
132 PRK09694 helicase Cas3; Provis 98.9 1.6E-07 3.5E-12 119.9 25.1 101 280-383 557-665 (878)
133 TIGR01054 rgy reverse gyrase. 98.9 5.8E-08 1.3E-12 127.6 20.8 89 269-366 315-410 (1171)
134 KOG0347 RNA helicase [RNA proc 98.9 2.3E-08 5E-13 117.4 15.0 98 283-383 463-560 (731)
135 KOG0340 ATP-dependent RNA heli 98.9 9.1E-09 2E-13 115.8 10.5 118 265-385 235-353 (442)
136 PRK11664 ATP-dependent RNA hel 98.9 4.9E-08 1.1E-12 124.4 18.4 106 282-393 211-337 (812)
137 PRK12904 preprotein translocas 98.8 2.9E-07 6.3E-12 115.8 24.6 130 265-401 412-579 (830)
138 PRK13107 preprotein translocas 98.8 6.1E-07 1.3E-11 112.9 25.7 130 265-401 431-597 (908)
139 COG1205 Distinct helicase fami 98.8 1.9E-07 4E-12 119.5 21.4 118 268-388 291-417 (851)
140 PRK05580 primosome assembly pr 98.8 4.6E-07 9.9E-12 114.0 24.5 100 289-391 432-547 (679)
141 KOG0334 RNA helicase [RNA proc 98.8 6.2E-08 1.3E-12 121.4 16.5 117 266-386 597-713 (997)
142 TIGR00631 uvrb excinuclease AB 98.8 3.6E-08 7.9E-13 122.9 14.6 113 266-381 425-542 (655)
143 COG1204 Superfamily II helicas 98.8 5.7E-08 1.2E-12 122.6 16.2 108 271-382 241-395 (766)
144 COG1197 Mfd Transcription-repa 98.8 2E-07 4.3E-12 118.9 20.0 108 275-386 796-906 (1139)
145 PRK05298 excinuclease ABC subu 98.8 1.1E-07 2.4E-12 118.9 17.2 112 266-380 429-545 (652)
146 PF11496 HDA2-3: Class II hist 98.8 1.4E-07 3.1E-12 107.2 16.5 203 184-393 5-243 (297)
147 KOG0351 ATP-dependent DNA heli 98.7 1.4E-07 3.1E-12 120.3 17.5 109 282-393 484-592 (941)
148 KOG0348 ATP-dependent RNA heli 98.7 6.1E-08 1.3E-12 113.6 12.5 121 268-391 408-552 (708)
149 COG1202 Superfamily II helicas 98.7 3.4E-07 7.3E-12 108.3 17.5 106 284-393 441-551 (830)
150 PRK11131 ATP-dependent RNA hel 98.7 1.7E-07 3.7E-12 122.4 16.7 104 282-393 285-409 (1294)
151 KOG0337 ATP-dependent RNA heli 98.7 4.8E-08 1.1E-12 111.9 9.8 115 267-385 246-360 (529)
152 PRK14701 reverse gyrase; Provi 98.7 4.2E-07 9.1E-12 122.3 19.3 102 271-383 321-446 (1638)
153 TIGR01967 DEAH_box_HrpA ATP-de 98.6 4.4E-07 9.6E-12 118.9 17.3 104 282-393 278-402 (1283)
154 KOG0344 ATP-dependent RNA heli 98.6 1.5E-07 3.3E-12 112.0 11.8 119 267-390 373-492 (593)
155 KOG0327 Translation initiation 98.6 7.5E-08 1.6E-12 109.8 8.5 111 268-385 252-362 (397)
156 PRK12900 secA preprotein trans 98.5 3.9E-07 8.5E-12 115.1 12.7 129 266-401 581-717 (1025)
157 KOG0346 RNA helicase [RNA proc 98.5 9.2E-07 2E-11 102.1 12.7 121 265-389 251-406 (569)
158 TIGR00596 rad1 DNA repair prot 98.5 3.3E-06 7.2E-11 107.3 18.4 78 38-116 6-91 (814)
159 KOG0352 ATP-dependent DNA heli 98.5 3E-06 6.5E-11 97.4 16.1 103 286-391 258-360 (641)
160 COG4098 comFA Superfamily II D 98.5 1.2E-05 2.6E-10 90.9 20.1 116 271-391 293-414 (441)
161 COG4889 Predicted helicase [Ge 98.4 4.3E-07 9.3E-12 110.8 8.7 104 291-395 479-588 (1518)
162 KOG1472 Histone acetyltransfer 98.4 1.3E-07 2.7E-12 116.2 3.9 104 876-986 605-708 (720)
163 KOG0952 DNA/RNA helicase MER3/ 98.3 2.1E-05 4.6E-10 98.7 19.2 103 280-385 346-481 (1230)
164 KOG0349 Putative DEAD-box RNA 98.2 2.6E-06 5.6E-11 97.9 7.6 95 283-380 505-602 (725)
165 cd00046 DEXDc DEAD-like helica 98.2 3.9E-06 8.5E-11 81.2 7.9 95 2-99 44-144 (144)
166 PRK12326 preprotein translocas 98.2 0.00016 3.5E-09 89.9 23.2 131 265-402 409-554 (764)
167 PRK12903 secA preprotein trans 98.1 0.00028 6E-09 89.0 21.8 130 264-401 407-545 (925)
168 KOG1513 Nuclear helicase MOP-3 98.0 0.00011 2.3E-09 89.9 15.9 64 327-393 851-922 (1300)
169 PF04851 ResIII: Type III rest 98.0 1E-05 2.2E-10 83.6 6.6 97 2-100 64-183 (184)
170 cd05491 Bromo_TBP7_like Bromod 98.0 5.2E-06 1.1E-10 81.6 4.0 41 923-963 63-103 (119)
171 PRK13103 secA preprotein trans 98.0 0.00056 1.2E-08 87.1 22.7 131 264-401 430-597 (913)
172 KOG0947 Cytoplasmic exosomal R 98.0 0.00049 1.1E-08 86.2 21.3 79 311-393 634-721 (1248)
173 smart00487 DEXDc DEAD-like hel 98.0 2.2E-05 4.7E-10 80.9 8.2 106 2-110 68-181 (201)
174 COG0556 UvrB Helicase subunit 97.9 0.00012 2.6E-09 87.0 14.6 107 271-380 434-545 (663)
175 PRK12899 secA preprotein trans 97.9 0.0021 4.5E-08 82.2 26.2 130 265-401 550-687 (970)
176 KOG0353 ATP-dependent DNA heli 97.9 7.6E-05 1.7E-09 84.8 12.0 90 282-374 316-405 (695)
177 COG1203 CRISPR-associated heli 97.8 0.00071 1.5E-08 86.4 20.8 109 278-390 435-547 (733)
178 KOG0951 RNA helicase BRR2, DEA 97.8 0.00021 4.6E-09 91.2 14.4 77 307-387 607-696 (1674)
179 KOG0955 PHD finger protein BR1 97.6 0.00026 5.6E-09 91.2 11.4 101 878-985 566-666 (1051)
180 KOG0953 Mitochondrial RNA heli 97.6 0.00016 3.5E-09 86.2 8.8 114 268-385 341-466 (700)
181 PF13871 Helicase_C_4: Helicas 97.6 8.2E-05 1.8E-09 83.9 6.0 78 324-404 52-140 (278)
182 KOG0329 ATP-dependent RNA heli 97.5 0.0011 2.3E-08 72.8 12.6 47 340-386 302-348 (387)
183 KOG0949 Predicted helicase, DE 97.3 0.015 3.3E-07 73.6 20.1 99 313-414 968-1067(1330)
184 COG0610 Type I site-specific r 97.2 0.0026 5.6E-08 83.4 13.0 77 320-398 578-656 (962)
185 COG1110 Reverse gyrase [DNA re 97.1 0.0079 1.7E-07 76.7 15.9 87 268-364 323-416 (1187)
186 PF00270 DEAD: DEAD/DEAH box h 97.1 0.0012 2.6E-08 67.7 7.1 98 5-105 61-167 (169)
187 CHL00122 secA preprotein trans 97.0 0.043 9.2E-07 70.3 20.5 84 266-353 407-491 (870)
188 cd05494 Bromodomain_1 Bromodom 96.9 0.00078 1.7E-08 66.7 4.0 56 880-939 3-60 (114)
189 cd00268 DEADc DEAD-box helicas 96.8 0.0035 7.6E-08 66.7 8.5 96 2-100 83-185 (203)
190 cd05516 Bromo_SNF2L2 Bromodoma 96.8 0.00018 3.9E-09 70.4 -1.6 63 653-721 11-74 (107)
191 KOG0008 Transcription initiati 96.8 0.00072 1.6E-08 87.0 3.1 80 903-983 1402-1481(1563)
192 cd05525 Bromo_ASH1 Bromodomain 96.8 0.00019 4.1E-09 70.1 -1.6 56 665-721 19-75 (106)
193 cd05520 Bromo_polybromo_III Br 96.7 0.00025 5.4E-09 68.9 -1.6 55 666-721 18-73 (103)
194 TIGR02562 cas3_yersinia CRISPR 96.7 0.14 3E-06 66.8 21.9 48 335-385 837-884 (1110)
195 KOG0948 Nuclear exosomal RNA h 96.6 0.0045 9.8E-08 76.3 8.2 75 313-391 452-535 (1041)
196 PF02399 Herpes_ori_bp: Origin 96.6 0.022 4.7E-07 72.2 14.3 110 271-391 271-386 (824)
197 cd05517 Bromo_polybromo_II Bro 96.6 0.00031 6.7E-09 68.3 -1.4 56 665-721 17-73 (103)
198 PRK12902 secA preprotein trans 96.6 0.24 5.1E-06 63.8 23.0 85 265-353 421-506 (939)
199 PF13872 AAA_34: P-loop contai 96.5 0.01 2.2E-07 67.8 9.4 138 39-201 136-302 (303)
200 cd05515 Bromo_polybromo_V Brom 96.3 0.00054 1.2E-08 66.8 -1.6 55 666-721 18-73 (105)
201 cd05524 Bromo_polybromo_I Brom 96.3 0.00053 1.2E-08 67.7 -1.7 56 665-721 19-75 (113)
202 cd05519 Bromo_SNF2 Bromodomain 96.3 0.00057 1.2E-08 66.3 -1.5 55 666-721 18-73 (103)
203 COG4581 Superfamily II RNA hel 96.3 0.019 4.1E-07 74.6 11.1 76 312-391 449-533 (1041)
204 cd05522 Bromo_Rsc1_2_II Bromod 96.3 0.00063 1.4E-08 66.2 -1.6 56 665-721 18-74 (104)
205 KOG0950 DNA polymerase theta/e 96.1 0.027 5.8E-07 71.7 10.9 71 309-382 524-598 (1008)
206 cd05518 Bromo_polybromo_IV Bro 96.1 0.00089 1.9E-08 65.1 -1.7 55 666-721 18-73 (103)
207 PF13307 Helicase_C_2: Helicas 96.0 0.02 4.2E-07 60.2 7.8 100 280-386 6-143 (167)
208 KOG1472 Histone acetyltransfer 95.8 0.0055 1.2E-07 76.4 3.2 105 873-991 289-393 (720)
209 TIGR01407 dinG_rel DnaQ family 95.8 0.045 9.8E-07 71.5 11.4 110 271-386 661-807 (850)
210 KOG0386 Chromatin remodeling c 95.6 0.0042 9.1E-08 78.7 1.1 59 665-724 1041-1100(1157)
211 PRK12901 secA preprotein trans 95.5 0.066 1.4E-06 69.4 10.9 130 265-401 610-747 (1112)
212 PF07652 Flavi_DEAD: Flaviviru 95.4 0.026 5.6E-07 58.2 5.8 62 38-100 71-137 (148)
213 COG0653 SecA Preprotein transl 95.4 0.67 1.4E-05 59.5 19.2 130 265-401 411-551 (822)
214 COG1199 DinG Rad3-related DNA 95.3 0.11 2.3E-06 65.9 12.2 114 271-389 466-613 (654)
215 KOG0922 DEAH-box RNA helicase 95.1 1.1 2.3E-05 56.0 19.2 106 285-393 260-388 (674)
216 KOG0920 ATP-dependent RNA heli 95.1 0.51 1.1E-05 61.3 17.1 120 268-393 396-542 (924)
217 PRK08074 bifunctional ATP-depe 95.1 0.1 2.2E-06 68.9 11.2 114 270-386 738-886 (928)
218 COG5076 Transcription factor i 95.0 0.0023 5E-08 75.6 -3.6 81 901-982 281-361 (371)
219 KOG4150 Predicted ATP-dependen 95.0 0.086 1.9E-06 63.6 9.0 130 266-398 508-646 (1034)
220 cd05521 Bromo_Rsc1_2_I Bromodo 94.9 0.0039 8.4E-08 61.1 -1.9 53 666-721 19-72 (106)
221 KOG0008 Transcription initiati 94.9 0.031 6.7E-07 72.8 5.3 79 903-982 1281-1359(1563)
222 KOG1828 IRF-2-binding protein 94.5 0.0063 1.4E-07 70.3 -1.8 74 904-978 40-113 (418)
223 PRK11747 dinG ATP-dependent DN 93.9 0.4 8.6E-06 61.5 12.5 92 269-365 520-616 (697)
224 cd05505 Bromo_WSTF_like Bromod 93.9 0.0093 2E-07 57.5 -1.7 50 671-721 17-67 (97)
225 cd05508 Bromo_RACK7 Bromodomai 93.8 0.0099 2.1E-07 57.5 -1.7 50 671-721 19-69 (99)
226 PRK07246 bifunctional ATP-depe 93.6 0.52 1.1E-05 61.5 12.8 89 271-365 635-725 (820)
227 cd05507 Bromo_brd8_like Bromod 93.6 0.011 2.3E-07 57.7 -1.8 52 669-721 18-70 (104)
228 TIGR00604 rad3 DNA repair heli 93.4 0.43 9.2E-06 61.3 11.4 96 270-367 508-618 (705)
229 cd05493 Bromo_ALL-1 Bromodomai 93.4 0.11 2.4E-06 52.6 4.9 69 921-989 56-124 (131)
230 cd05512 Bromo_brd1_like Bromod 93.4 0.013 2.8E-07 56.6 -1.7 52 669-721 16-68 (98)
231 cd05497 Bromo_Brdt_I_like Brom 93.3 0.017 3.6E-07 56.7 -1.1 52 669-721 20-74 (107)
232 cd05526 Bromo_polybromo_VI Bro 93.0 0.015 3.1E-07 57.4 -2.0 54 665-721 20-74 (110)
233 cd05496 Bromo_WDR9_II Bromodom 92.6 0.018 3.9E-07 57.6 -1.9 50 671-721 22-72 (119)
234 cd05510 Bromo_SPT7_like Bromod 92.4 0.022 4.7E-07 56.4 -1.6 50 671-721 25-75 (112)
235 cd05511 Bromo_TFIID Bromodomai 92.3 0.025 5.4E-07 55.9 -1.4 50 671-721 17-67 (112)
236 cd05503 Bromo_BAZ2A_B_like Bro 91.9 0.027 5.8E-07 54.2 -1.6 50 671-721 17-67 (97)
237 cd05498 Bromo_Brdt_II_like Bro 91.9 0.033 7.2E-07 53.9 -1.0 54 667-721 16-72 (102)
238 smart00492 HELICc3 helicase su 91.8 0.88 1.9E-05 46.9 9.2 53 310-365 25-79 (141)
239 cd05495 Bromo_cbp_like Bromodo 91.7 0.035 7.6E-07 54.5 -1.1 51 670-721 20-73 (108)
240 cd05499 Bromo_BDF1_2_II Bromod 91.6 0.033 7.2E-07 53.9 -1.4 52 669-721 18-72 (102)
241 cd05528 Bromo_AAA Bromodomain; 91.6 0.034 7.3E-07 55.0 -1.4 50 671-721 20-70 (112)
242 smart00491 HELICc2 helicase su 91.5 0.68 1.5E-05 47.7 8.0 54 311-365 23-80 (142)
243 smart00297 BROMO bromo domain. 91.5 0.029 6.3E-07 54.1 -1.9 52 669-721 22-74 (107)
244 KOG1828 IRF-2-binding protein 91.4 0.12 2.5E-06 60.2 2.5 78 891-975 221-298 (418)
245 cd05513 Bromo_brd7_like Bromod 91.4 0.033 7.2E-07 53.8 -1.6 49 672-721 19-68 (98)
246 PF06862 DUF1253: Protein of u 91.3 2.3 5E-05 51.6 13.3 115 266-382 280-398 (442)
247 cd05509 Bromo_gcn5_like Bromod 91.2 0.03 6.5E-07 54.1 -2.1 50 671-721 18-68 (101)
248 COG1198 PriA Primosomal protei 91.2 1 2.2E-05 57.7 10.6 93 296-391 493-601 (730)
249 cd05504 Bromo_Acf1_like Bromod 91.0 0.042 9.1E-07 54.6 -1.4 50 671-721 29-79 (115)
250 COG0553 HepA Superfamily II DN 90.7 0.17 3.7E-06 65.5 3.4 80 286-383 445-524 (866)
251 KOG0924 mRNA splicing factor A 90.7 2 4.2E-05 53.7 11.8 84 307-393 597-695 (1042)
252 PF06733 DEAD_2: DEAD_2; Inte 90.7 0.19 4.1E-06 53.0 3.1 37 38-74 118-158 (174)
253 KOG1474 Transcription initiati 90.6 0.094 2E-06 66.3 0.8 75 911-986 22-96 (640)
254 cd05529 Bromo_WDR9_I_like Brom 90.4 0.054 1.2E-06 54.9 -1.3 54 667-721 40-95 (128)
255 PF00439 Bromodomain: Bromodom 89.8 0.036 7.8E-07 51.1 -2.8 50 670-720 12-62 (84)
256 smart00488 DEXDc2 DEAD-like he 87.9 0.52 1.1E-05 54.1 4.2 38 37-74 209-249 (289)
257 smart00489 DEXDc3 DEAD-like he 87.9 0.52 1.1E-05 54.1 4.2 38 37-74 209-249 (289)
258 cd05502 Bromo_tif1_like Bromod 87.3 0.1 2.3E-06 51.2 -1.6 50 670-721 20-73 (109)
259 cd05492 Bromo_ZMYND11 Bromodom 87.1 0.1 2.2E-06 51.5 -1.8 43 678-721 31-73 (109)
260 cd05506 Bromo_plant1 Bromodoma 86.5 0.13 2.8E-06 49.5 -1.4 49 672-721 18-69 (99)
261 cd04369 Bromodomain Bromodomai 85.3 0.13 2.7E-06 48.0 -2.1 52 669-721 17-69 (99)
262 PF14619 SnAC: Snf2-ATP coupli 85.0 0.55 1.2E-05 43.2 2.0 22 513-534 16-37 (74)
263 TIGR00595 priA primosomal prot 84.7 6.4 0.00014 48.8 11.6 95 264-362 6-101 (505)
264 PRK10917 ATP-dependent DNA hel 84.6 5.8 0.00013 51.0 11.5 96 264-361 291-390 (681)
265 COG1643 HrpA HrpA-like helicas 84.3 4.4 9.6E-05 52.9 10.3 105 283-393 259-385 (845)
266 cd05494 Bromodomain_1 Bromodom 83.9 0.44 9.4E-06 47.4 0.9 39 670-709 19-60 (114)
267 cd05500 Bromo_BDF1_2_I Bromodo 83.3 0.24 5.2E-06 48.2 -1.2 51 670-721 20-73 (103)
268 PRK11747 dinG ATP-dependent DN 82.4 1.2 2.6E-05 57.2 4.2 38 37-74 217-259 (697)
269 TIGR03117 cas_csf4 CRISPR-asso 82.2 6.8 0.00015 49.8 10.5 86 282-370 470-566 (636)
270 TIGR00643 recG ATP-dependent D 81.5 9.2 0.0002 48.7 11.5 96 264-361 265-364 (630)
271 cd05501 Bromo_SP100C_like Brom 81.4 0.33 7.2E-06 47.4 -1.0 40 681-721 28-67 (102)
272 PRK05580 primosome assembly pr 81.1 9.9 0.00021 48.9 11.6 95 264-362 171-266 (679)
273 TIGR00604 rad3 DNA repair heli 79.3 1.4 3.1E-05 56.6 3.4 37 38-74 194-233 (705)
274 TIGR01407 dinG_rel DnaQ family 78.6 1.5 3.4E-05 57.5 3.4 38 37-74 414-453 (850)
275 TIGR03117 cas_csf4 CRISPR-asso 78.6 1.8 4E-05 54.8 3.9 38 37-74 180-219 (636)
276 PF13401 AAA_22: AAA domain; P 74.6 2.9 6.2E-05 41.1 3.3 43 55-99 81-125 (131)
277 PRK08074 bifunctional ATP-depe 74.0 3.2 6.8E-05 55.2 4.4 38 37-74 429-468 (928)
278 TIGR00580 mfd transcription-re 73.9 19 0.00041 48.0 11.3 95 265-361 482-580 (926)
279 PRK07246 bifunctional ATP-depe 73.2 3.2 7E-05 54.4 4.1 38 37-74 411-449 (820)
280 KOG1827 Chromatin remodeling c 72.5 0.13 2.7E-06 63.9 -8.2 233 667-995 71-308 (629)
281 COG3587 Restriction endonuclea 69.3 72 0.0016 41.8 14.2 45 337-381 484-528 (985)
282 PF13086 AAA_11: AAA domain; P 68.3 6.4 0.00014 42.0 4.5 60 37-103 168-230 (236)
283 PRK10689 transcription-repair 67.9 31 0.00067 47.1 11.5 94 265-360 631-728 (1147)
284 PRK14873 primosome assembly pr 67.4 24 0.00052 45.4 9.9 79 265-346 170-250 (665)
285 KOG1132 Helicase of the DEAD s 66.3 4.6 0.0001 52.0 3.2 37 37-73 220-259 (945)
286 KOG0644 Uncharacterized conser 63.8 5.4 0.00012 50.9 3.1 74 908-981 1037-1110(1113)
287 COG1198 PriA Primosomal protei 61.6 18 0.00039 46.8 7.3 80 263-345 225-305 (730)
288 KOG0923 mRNA splicing factor A 61.6 27 0.00058 44.3 8.3 120 266-393 451-604 (902)
289 PF09848 DUF2075: Uncharacteri 58.4 19 0.00041 42.4 6.4 63 13-75 30-97 (352)
290 KOG1133 Helicase of the DEAD s 57.1 7.1 0.00015 49.3 2.5 80 284-366 630-721 (821)
291 PRK10536 hypothetical protein; 55.9 19 0.00041 41.1 5.5 57 41-104 161-217 (262)
292 PRK14873 primosome assembly pr 55.2 20 0.00043 46.1 6.1 93 2-100 202-304 (665)
293 KOG1245 Chromatin remodeling c 50.5 4.6 9.9E-05 55.5 -0.5 51 669-720 1316-1367(1404)
294 PF02562 PhoH: PhoH-like prote 50.4 14 0.0003 40.7 3.2 43 61-105 119-161 (205)
295 COG1200 RecG RecG-like helicas 48.4 1.1E+02 0.0023 39.4 10.7 94 265-360 293-390 (677)
296 TIGR03420 DnaA_homol_Hda DnaA 48.3 1.6E+02 0.0034 31.8 11.0 98 3-100 24-133 (226)
297 COG1199 DinG Rad3-related DNA 48.3 14 0.0003 47.1 3.3 38 38-75 193-234 (654)
298 PF13173 AAA_14: AAA domain 47.7 19 0.00042 35.8 3.6 39 61-100 61-99 (128)
299 TIGR00614 recQ_fam ATP-depende 45.3 1.4E+02 0.003 36.8 11.1 80 264-348 35-114 (470)
300 cd00268 DEADc DEAD-box helicas 42.9 2.1E+02 0.0045 30.3 10.8 90 265-360 46-149 (203)
301 COG1197 Mfd Transcription-repa 41.8 5.1E+02 0.011 35.6 15.8 125 267-401 627-760 (1139)
302 PRK04296 thymidine kinase; Pro 41.5 50 0.0011 35.5 5.8 38 59-98 76-114 (190)
303 KOG0340 ATP-dependent RNA heli 41.1 39 0.00084 40.1 5.0 81 14-99 103-194 (442)
304 PF07517 SecA_DEAD: SecA DEAD- 40.8 49 0.0011 37.9 5.8 63 3-73 136-209 (266)
305 PRK07003 DNA polymerase III su 40.6 37 0.00081 44.2 5.2 41 60-100 118-159 (830)
306 PLN03025 replication factor C 40.3 38 0.00082 39.3 5.0 51 61-111 99-150 (319)
307 PRK08084 DNA replication initi 40.1 1.3E+02 0.0029 33.3 9.1 59 38-98 72-139 (235)
308 PRK15483 type III restriction- 40.0 27 0.00059 46.4 4.0 44 337-380 502-545 (986)
309 KOG1131 RNA polymerase II tran 38.9 20 0.00044 44.1 2.5 38 38-75 198-239 (755)
310 cd00046 DEXDc DEAD-like helica 38.8 1.5E+02 0.0032 28.1 8.1 78 265-348 10-92 (144)
311 PF05621 TniB: Bacterial TniB 38.6 25 0.00054 40.9 3.0 46 54-99 138-189 (302)
312 PRK05642 DNA replication initi 35.9 1.3E+02 0.0029 33.4 8.2 61 38-98 72-138 (234)
313 cd00009 AAA The AAA+ (ATPases 35.8 1.4E+02 0.0031 28.5 7.6 42 61-102 84-132 (151)
314 KOG1133 Helicase of the DEAD s 34.4 1.5E+02 0.0032 38.3 8.8 38 38-75 322-362 (821)
315 KOG0926 DEAH-box RNA helicase 33.8 29 0.00063 44.8 2.7 78 310-393 607-702 (1172)
316 PRK14701 reverse gyrase; Provi 33.2 1.9E+02 0.0042 41.3 10.6 81 264-346 103-189 (1638)
317 cd06533 Glyco_transf_WecG_TagA 32.3 2.7E+02 0.0058 29.5 9.4 72 269-342 32-106 (171)
318 TIGR00696 wecB_tagA_cpsF bacte 30.6 3.2E+02 0.007 29.4 9.7 72 269-342 34-107 (177)
319 KOG0348 ATP-dependent RNA heli 30.5 33 0.00073 42.5 2.4 62 38-99 261-341 (708)
320 KOG2340 Uncharacterized conser 30.4 1.5E+02 0.0032 37.2 7.7 109 267-377 534-645 (698)
321 PF03808 Glyco_tran_WecB: Glyc 30.3 2.9E+02 0.0064 29.3 9.3 72 269-342 34-108 (172)
322 KOG1924 RhoA GTPase effector D 30.2 94 0.002 40.2 6.1 16 495-510 316-331 (1102)
323 KOG1803 DNA helicase [Replicat 30.2 48 0.001 41.7 3.7 58 37-101 336-393 (649)
324 PRK12323 DNA polymerase III su 30.0 85 0.0018 40.4 5.9 37 60-98 123-162 (700)
325 PHA00673 acetyltransferase dom 29.6 96 0.0021 32.8 5.4 45 61-105 87-134 (154)
326 TIGR01054 rgy reverse gyrase. 29.1 2.3E+02 0.005 39.2 10.1 82 264-347 102-190 (1171)
327 KOG0925 mRNA splicing factor A 28.4 6.4E+02 0.014 31.6 12.3 119 269-393 237-385 (699)
328 cd00984 DnaB_C DnaB helicase C 28.2 2.5E+02 0.0053 30.8 8.7 71 294-365 110-209 (242)
329 PRK07764 DNA polymerase III su 27.6 63 0.0014 42.7 4.4 37 60-98 119-158 (824)
330 PF00270 DEAD: DEAD/DEAH box h 27.4 3.6E+02 0.0077 27.3 9.2 78 264-347 23-107 (169)
331 PRK11776 ATP-dependent RNA hel 27.1 3.3E+02 0.0071 33.2 10.3 93 264-362 50-155 (460)
332 COG1875 NYN ribonuclease and A 27.0 50 0.0011 39.5 3.0 41 61-103 351-391 (436)
333 PF06490 FleQ: Flagellar regul 26.9 3E+02 0.0065 27.1 8.1 65 307-377 43-107 (109)
334 PRK05728 DNA polymerase III su 26.8 1.1E+02 0.0023 31.7 5.1 86 265-365 11-96 (142)
335 KOG0926 DEAH-box RNA helicase 26.2 51 0.0011 42.8 3.0 33 40-72 350-383 (1172)
336 PRK08903 DnaA regulatory inact 26.2 5E+02 0.011 28.2 10.6 85 13-99 40-131 (227)
337 PRK14949 DNA polymerase III su 25.7 62 0.0013 43.0 3.8 38 60-99 118-158 (944)
338 TIGR02881 spore_V_K stage V sp 25.4 2.2E+02 0.0048 32.0 7.8 46 56-101 100-154 (261)
339 KOG1924 RhoA GTPase effector D 25.1 6.7E+02 0.015 33.0 12.1 7 324-330 214-220 (1102)
340 PHA03372 DNA packaging termina 25.0 1.1E+02 0.0024 39.0 5.5 21 55-75 293-313 (668)
341 PRK14956 DNA polymerase III su 24.9 79 0.0017 39.3 4.3 37 61-99 121-160 (484)
342 cd02067 B12-binding B12 bindin 24.9 2.5E+02 0.0055 27.4 7.2 53 285-342 1-57 (119)
343 PRK06646 DNA polymerase III su 24.8 1.2E+02 0.0027 31.9 5.2 41 264-304 10-50 (154)
344 PRK04132 replication factor C 24.7 70 0.0015 42.3 4.0 52 61-112 630-682 (846)
345 KOG0162 Myosin class I heavy c 24.3 4.9E+02 0.011 33.9 10.7 25 935-959 839-863 (1106)
346 KOG0352 ATP-dependent DNA heli 24.3 1.4E+02 0.0031 36.4 6.0 77 271-348 50-126 (641)
347 TIGR00365 monothiol glutaredox 24.1 3.4E+02 0.0073 26.1 7.7 59 282-342 10-74 (97)
348 PF13604 AAA_30: AAA domain; P 24.1 95 0.0021 33.5 4.4 39 61-101 93-132 (196)
349 COG1702 PhoH Phosphate starvat 24.0 41 0.00088 39.8 1.6 43 61-105 243-285 (348)
350 PRK04537 ATP-dependent RNA hel 23.9 4.2E+02 0.009 33.7 10.6 72 283-360 84-165 (572)
351 PF13607 Succ_CoA_lig: Succiny 23.8 2.9E+02 0.0062 28.6 7.5 86 285-392 3-90 (138)
352 PRK09751 putative ATP-dependen 22.8 3E+02 0.0064 39.0 9.4 74 283-362 37-132 (1490)
353 TIGR01389 recQ ATP-dependent D 22.6 4.5E+02 0.0098 33.3 10.6 78 264-346 37-114 (591)
354 PRK13766 Hef nuclease; Provisi 22.6 4.3E+02 0.0094 34.6 10.7 93 265-364 39-141 (773)
355 PRK08691 DNA polymerase III su 22.5 1.8E+02 0.0039 37.8 6.9 49 61-111 119-170 (709)
356 cd03028 GRX_PICOT_like Glutare 22.2 2.9E+02 0.0063 25.9 6.8 59 282-342 6-70 (90)
357 PRK07994 DNA polymerase III su 22.2 1E+02 0.0022 39.6 4.8 37 61-99 119-158 (647)
358 KOG0701 dsRNA-specific nucleas 21.8 65 0.0014 45.1 3.0 93 286-381 295-399 (1606)
359 PRK09112 DNA polymerase III su 21.7 1E+02 0.0022 36.8 4.3 14 61-74 141-154 (351)
360 KOG1832 HIV-1 Vpr-binding prot 21.7 67 0.0015 41.9 2.9 95 590-739 1404-1498(1516)
361 cd01524 RHOD_Pyr_redox Member 21.5 1.1E+02 0.0024 28.2 3.8 38 281-318 49-86 (90)
362 PRK05986 cob(I)alamin adenolsy 21.5 87 0.0019 34.2 3.4 59 54-112 108-170 (191)
363 PRK14958 DNA polymerase III su 21.3 1.1E+02 0.0024 38.3 4.7 47 61-109 119-168 (509)
364 PRK11192 ATP-dependent RNA hel 21.3 5.9E+02 0.013 30.7 10.8 90 265-360 48-153 (434)
365 PRK12901 secA preprotein trans 21.3 1.6E+02 0.0035 39.8 6.2 90 2-112 227-329 (1112)
366 PRK11057 ATP-dependent DNA hel 21.0 5E+02 0.011 33.2 10.5 78 264-346 49-126 (607)
367 TIGR00708 cobA cob(I)alamin ad 21.0 76 0.0017 34.1 2.8 58 54-114 90-151 (173)
368 COG4646 DNA methylase [Transcr 20.8 56 0.0012 39.8 1.9 31 89-119 473-503 (637)
369 TIGR03015 pepcterm_ATPase puta 20.7 82 0.0018 35.0 3.1 39 61-99 123-165 (269)
370 PRK09401 reverse gyrase; Revie 20.6 4.9E+02 0.011 36.1 10.8 95 264-360 104-207 (1176)
371 PF10593 Z1: Z1 domain; Inter 20.4 1.7E+02 0.0036 33.1 5.4 94 289-389 93-189 (239)
372 smart00450 RHOD Rhodanese Homo 20.3 1.5E+02 0.0033 26.7 4.4 38 281-318 54-92 (100)
373 COG1110 Reverse gyrase [DNA re 20.3 4.1E+02 0.0089 36.1 9.3 80 266-347 108-193 (1187)
374 TIGR02370 pyl_corrinoid methyl 20.2 7.4E+02 0.016 26.9 10.2 85 283-390 84-172 (197)
No 1
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.6e-108 Score=980.78 Aligned_cols=663 Identities=42% Similarity=0.632 Sum_probs=572.8
Q ss_pred ChhHHHHHHHHcCCCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchhhhccCCccEEEEcCCccCCChhhHH
Q 001037 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVL 80 (1179)
Q Consensus 1 LsQW~~Ef~Kw~P~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriKN~~Sk~ 80 (1179)
|+||..||.+|+|++..++|+|.+..|..+..+. ..++|+|++|||+++++++..|.++.|.++||||+|+|||..|++
T Consensus 456 L~NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~~qi-r~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~~KL 534 (1157)
T KOG0386|consen 456 LVNWSSEFPKWAPSVQKIQYKGTPQQRSGLTKQQ-RHGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAICKL 534 (1157)
T ss_pred cCCchhhccccccceeeeeeeCCHHHHhhHHHHH-hcccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchhhHH
Confidence 6899999999999999999999999999988764 459999999999999999999999999999999999999999999
Q ss_pred HHHHH-hhcCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCCCCchhHHHHHHHHHHHHH
Q 001037 81 ARDLD-RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 159 (1179)
Q Consensus 81 tkaL~-~Lka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~ee~~~ii~rL 159 (1179)
+..|. .+.+++||||||||+||++.|||+|||||.|.+|+++..|.+||+.||+..| +..++..++.+++|+||
T Consensus 535 t~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantG-----ek~eLteEEtlLIIrRL 609 (1157)
T KOG0386|consen 535 TDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTG-----EKVELTEEETLLIIRRL 609 (1157)
T ss_pred HHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcC-----CcccccchHHHHHHHHH
Confidence 99999 6799999999999999999999999999999999999999999999999987 34567889999999999
Q ss_pred HHhhhhhhhhhhhhhhhcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHHHHHHHH
Q 001037 160 HQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239 (1179)
Q Consensus 160 ~kvL~pf~LRRtKkDV~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL~~~l~~ 239 (1179)
|++|+||++||.|++|+.+||++++.++.|.||+.|+.+|..+.....+.++. ......++.|+|.+|+
T Consensus 610 HkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~-----------~~g~~g~k~L~N~imq 678 (1157)
T KOG0386|consen 610 HKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDT-----------AKGKKGYKPLFNTIMQ 678 (1157)
T ss_pred HHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCc-----------hhccccchhhhhHhHH
Confidence 99999999999999999999999999999999999999999999887776554 1122357889999999
Q ss_pred HHHHcCCCCCCC----CcccccchhhhhcccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcC
Q 001037 240 LRKTCNHPLLNY----PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDG 315 (1179)
Q Consensus 240 LRkicnhP~L~~----~~l~~l~~~~lv~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdG 315 (1179)
||++||||+++. ..........+++.|||+++|+++|.+|.++||+||+|||||.++++|++||..+++.|+++||
T Consensus 679 LRKiCNHP~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG 758 (1157)
T KOG0386|consen 679 LRKLCNHPYLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDG 758 (1157)
T ss_pred HHHhcCCchhhhhhccccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecC
Confidence 999999999983 2222333368999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeeh
Q 001037 316 TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVV 395 (1179)
Q Consensus 316 sts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVE 395 (1179)
.|+.++|..++..||.++++|++||+||+|||.|||||+||+||+||++|||+++.||.+|+|||||+++|+|+++++
T Consensus 759 ~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~t-- 836 (1157)
T KOG0386|consen 759 QTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLIT-- 836 (1157)
T ss_pred CcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeeh--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhhhhhhhhccCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhhh
Q 001037 396 DKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEE 475 (1179)
Q Consensus 396 E~I~~~q~ek~~~~~~tv~~~~~l~Gk~~~~gSIEE~Il~~Lq~~K~dla~~Vi~ag~Fd~~~~~eEr~~~Le~ll~~e~ 475 (1179)
.+++||.|+.+ +.+|++++.+||++|.|++++++++|++.|+.+++.+.
T Consensus 837 ------------------------------v~sveE~il~~-a~~Kl~~d~kviqag~fdn~st~~eR~~~Le~~l~~~~ 885 (1157)
T KOG0386|consen 837 ------------------------------VNSVEEKILAE-AFYKLDVDGKVIQAGKFDNKSTAEEREMFLEQLLEMEG 885 (1157)
T ss_pred ------------------------------hhHHHHHHHHH-HHHhcCchHhhhhcccccCCCcHHHHHHHHHHHHhCCC
Confidence 38999999985 68999999999999999999999999999999999887
Q ss_pred cccccccCCCCHHHHHHHHhcChhHHHHHHHhhhhcCcc-------hhhcccccchHHHhhchHHHHHHHHhhccCCccc
Q 001037 476 RYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWI-------EEMTRYDQVPKWLRASTKEVNATIANLSKKPSKN 548 (1179)
Q Consensus 476 ~~~e~~~~v~~~~eln~liaRseeE~~lf~~~D~e~~~~-------~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 548 (1179)
.+.+ ++|+++++||+||||+++|+++|.+||.++.|. ++|+.++++|.|+.....+++..-+
T Consensus 886 ~~~~--~~v~~~~~ln~~larseeE~~~f~~md~~r~~~e~~~~~k~rl~ee~e~p~~i~~~~~~~~~~~~--------- 954 (1157)
T KOG0386|consen 886 DEEE--EEVPDDEVLNSMLARSEEEFELFHKMDEERRATENQQEKKPRLVEEAELPADIYKRDQGVERLSE--------- 954 (1157)
T ss_pred cccc--ccCCcHHHHHHHHhcchHHHHHHHHhhHHHHhhhhhccccchhhhhhhcHHHHHhcchhhhhhhh---------
Confidence 5544 789999999999999999999999999998763 3789999999999987776553211
Q ss_pred ccccCCcccCchhhhHhhhcCCCCCCCCCccccCccccccccccccccCCCCcccccccCCCcccccCCCCCCCCCCCCC
Q 001037 549 ILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERNGYPVQEEEGEIGEFEDDEYSGAVGAPLSNKD 628 (1179)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (1179)
+++.+....||.+.+|+..|. +...+.-|..+.++.....+. +++
T Consensus 955 ----------~~~~~~~~~rg~r~Rkev~y~-d~~te~q~~k~~e~~~~~~~~------------~~~------------ 999 (1157)
T KOG0386|consen 955 ----------EEEEEKILGRGRRARKEVVYS-DRLTEMQWLKENESVNKEDSE------------EEE------------ 999 (1157)
T ss_pred ----------hhhhhccccccccccceeecc-cccchhhhhhhccccccccch------------hhh------------
Confidence 111122235778888888888 222233343333332111000 000
Q ss_pred CcccCCCcccCCccccCccccccccchhhhccCCCCCCCccccccccCCCCccccCchhhhhcCCCCccccccccccccc
Q 001037 629 QSEEDGPVCEGGYDYLRPSENTRNNHVVEEAGSSGSSSNSRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGE 708 (1179)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 708 (1179)
+ ..| .+. .+++.+|.+.+|+
T Consensus 1000 ---------------~-------------~~~----------------~~~-------~~~~~~~~~~~~~--------- 1019 (1157)
T KOG0386|consen 1000 ---------------R-------------RRG----------------RKK-------SSLDTRPLSQKKR--------- 1019 (1157)
T ss_pred ---------------h-------------ccC----------------CCc-------cccccccchhhcc---------
Confidence 0 000 000 0223333333331
Q ss_pred ccccCCCccccccCCCccccCCcCccccccchhhhcccccccccCCCcCCcccccCCCCCcccCCCCccccccCCCCcch
Q 001037 709 IAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQ 788 (1179)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1179)
T Consensus 1020 -------------------------------------------------------------------------------- 1019 (1157)
T KOG0386|consen 1020 -------------------------------------------------------------------------------- 1019 (1157)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hccchhhhccCCCCccccCCCCcccccCCCCCCcccCCCcCccccccCCCCCCCCCCccchhccccccCCCcccCCCCCC
Q 001037 789 LRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSS 868 (1179)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1179)
++ .+|.
T Consensus 1020 ----------------------------------------~~-----~~~~----------------------------- 1025 (1157)
T KOG0386|consen 1020 ----------------------------------------KL-----RPRS----------------------------- 1025 (1157)
T ss_pred ----------------------------------------cc-----cCCC-----------------------------
Confidence 00 0000
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHH
Q 001037 869 NFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSD 948 (1179)
Q Consensus 869 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d 948 (1179)
+ +.|+.|+++.-.++|++||.+.+.|+.+|+|+++||||.+ |..|+++.+|-++|....|.+..++..|
T Consensus 1026 -------~---~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~~~d~~~~-i~~~~~~~~~~~~i~~~~~~~~~~~~~~ 1094 (1157)
T KOG0386|consen 1026 -------P---KQALKIASTSIKYKDSAGRELSEVFLKLPSRKEYPDYYEI-IKKPVAIDKIKKRIENHKYNSLKELEKD 1094 (1157)
T ss_pred -------h---HHHHHHHHHHHhcccccccccchhcccCcccccccchHHH-hcchhhHHHHhhhccccccchHHHHHHH
Confidence 0 8999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHhhh
Q 001037 949 VQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 984 (1179)
Q Consensus 949 ~~lm~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~ 984 (1179)
|.+||.||..||+.+|.+|.||..|..+|.......
T Consensus 1095 ~~~~~~na~~~~~egs~~y~d~~~l~~~~~~~~~~~ 1130 (1157)
T KOG0386|consen 1095 FMLLFNNARTYNEEGSRVYEDAIVLQSVFKSARQEI 1130 (1157)
T ss_pred HHhhcchhhhhccCCceechhHHHHHHHHhhhHHHH
Confidence 999999999999999999999999999998766554
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=2.5e-82 Score=741.38 Aligned_cols=437 Identities=40% Similarity=0.668 Sum_probs=380.2
Q ss_pred ChhHHHHHHHHcCCCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchhhhccCCccEEEEcCCccCCChhhHH
Q 001037 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVL 80 (1179)
Q Consensus 1 LsQW~~Ef~Kw~P~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriKN~~Sk~ 80 (1179)
+.||.+||.+|+|++++++|+|++..|..+.......+.|+||||||++++++...|.++.|.|+|||||||+||.+|++
T Consensus 229 L~NW~~Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L 308 (971)
T KOG0385|consen 229 LDNWMNEFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKL 308 (971)
T ss_pred HHHHHHHHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHH
Confidence 57999999999999999999999999999988888888999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCCCCchhHHHHHHHHHHHHHH
Q 001037 81 ARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 160 (1179)
Q Consensus 81 tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~ee~~~ii~rL~ 160 (1179)
++.|+.+.+.+||||||||+||++.|||+||+||.|++|++.+.|..||...... .....+.+||
T Consensus 309 ~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~---------------~~~e~v~~Lh 373 (971)
T KOG0385|consen 309 SKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCE---------------GDQELVSRLH 373 (971)
T ss_pred HHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccc---------------cCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999864211 1112578999
Q ss_pred HhhhhhhhhhhhhhhhcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHHHHHHHHH
Q 001037 161 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 240 (1179)
Q Consensus 161 kvL~pf~LRRtKkDV~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL~~~l~~L 240 (1179)
.+|+||+|||+|.+|...|||+.+..++|.|+..|+..|..+.......+..... ..-..|+|++|+|
T Consensus 374 ~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~------------~~k~kL~NI~mQL 441 (971)
T KOG0385|consen 374 KVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGK------------GEKTKLQNIMMQL 441 (971)
T ss_pred hhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhccccc------------chhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987653322211110 0246789999999
Q ss_pred HHHcCCCCCCCCccc---ccchhhhhcccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCC
Q 001037 241 RKTCNHPLLNYPYFS---DLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 317 (1179)
Q Consensus 241 RkicnhP~L~~~~l~---~l~~~~lv~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGst 317 (1179)
|+|||||||+..... ...++.++..|||+.+|+++|..|.+.|||||||+||+.++++|++||..+++.||+|||+|
T Consensus 442 RKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt 521 (971)
T KOG0385|consen 442 RKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGST 521 (971)
T ss_pred HHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCC
Confidence 999999999876322 23456789999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeehhh
Q 001037 318 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397 (1179)
Q Consensus 318 s~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~ 397 (1179)
+.++|...|+.||.+++.++|||+||+|||.||||++||+||+||.+|||+.+.||++|||||||+++|+||+|++
T Consensus 522 ~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLit---- 597 (971)
T KOG0385|consen 522 SHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLIT---- 597 (971)
T ss_pred CcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEec----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhhhhhhccCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHhcccccc-cccHHHHHHHHHHHHhhhhc
Q 001037 398 ISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQ-RTTHEERRMTLETLLHDEER 476 (1179)
Q Consensus 398 I~~~q~ek~~~~~~tv~~~~~l~Gk~~~~gSIEE~Il~~Lq~~K~dla~~Vi~ag~Fd~-~~~~eEr~~~Le~ll~~e~~ 476 (1179)
.+|||++|++++ ..|+.+...||+.|.... +... .-+..+..+++....
T Consensus 598 ----------------------------entVEe~IveRA-~~KL~Ld~~VIq~g~l~~~~~~~-~~k~~~l~~~r~g~~ 647 (971)
T KOG0385|consen 598 ----------------------------ENTVEEKIVERA-AAKLRLDKLVIQQGRLEEQKSNG-LGKDELLNLLRFGAD 647 (971)
T ss_pred ----------------------------cchHHHHHHHHH-HHHhchhhhhhccCchhhhhccc-cchHHHHHHHHcCch
Confidence 589999999974 679999999999994432 2222 222334455554432
Q ss_pred c-cccccCCCCHHHHHHHHhcChh
Q 001037 477 Y-QETVHDVPSLQEVNRMIARSED 499 (1179)
Q Consensus 477 ~-~e~~~~v~~~~eln~liaRsee 499 (1179)
. .+...+..++ +|..+|.++++
T Consensus 648 ~~f~~~es~~~d-Did~il~~~e~ 670 (971)
T KOG0385|consen 648 PVFESKESTISD-DIDRILERGEE 670 (971)
T ss_pred hhhhhcccccch-hHHHHHHhhhh
Confidence 2 2222222333 89999988874
No 3
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=3.4e-73 Score=690.09 Aligned_cols=433 Identities=40% Similarity=0.657 Sum_probs=367.2
Q ss_pred ChhHHHHHHHHcCCCcEEEEEcChhHHhHHHhhHhhh------CCCCEEEEcHHHHHhchhhhccCCccEEEEcCCccCC
Q 001037 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAA------LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK 74 (1179)
Q Consensus 1 LsQW~~Ef~Kw~P~l~Vvvy~G~~~~R~~l~~~~~~~------~~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriK 74 (1179)
|.+|+.||..|+ .+++++|+|+...|.-+....... .+|+++||||+++.++...|..++|.+++|||||++|
T Consensus 432 ~~~W~~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLk 510 (1373)
T KOG0384|consen 432 ITAWEREFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLK 510 (1373)
T ss_pred hHHHHHHHHHHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcC
Confidence 579999999999 999999999998887665444322 3699999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHhhcCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCCCCchhHHHHHHHH
Q 001037 75 DRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVI 154 (1179)
Q Consensus 75 N~~Sk~tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~ee~~~ 154 (1179)
|..|+++..|..++..+|||+||||+||++.|||+||+||+|+-|.+...|...|.. ++..
T Consensus 511 N~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~-------------------~~e~ 571 (1373)
T KOG0384|consen 511 NDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE-------------------ETEE 571 (1373)
T ss_pred chHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc-------------------hhHH
Confidence 999999999999999999999999999999999999999999999999999876621 1223
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHHH
Q 001037 155 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLN 234 (1179)
Q Consensus 155 ii~rL~kvL~pf~LRRtKkDV~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL~ 234 (1179)
.++.||++|.||||||+|+||+..||++.+.++.|+||+.|+..|.+|.......+... .+ ....+|+
T Consensus 572 ~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG------~~------g~~~~lL 639 (1373)
T KOG0384|consen 572 QVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKG------AK------GSTPSLL 639 (1373)
T ss_pred HHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhcc------CC------CCCchHH
Confidence 47889999999999999999999999999999999999999999999987533211100 00 0125789
Q ss_pred HHHHHHHHHcCCCCCCCCccccc-----------chhhhhcccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHH
Q 001037 235 NRCMELRKTCNHPLLNYPYFSDL-----------SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL 303 (1179)
Q Consensus 235 ~~l~~LRkicnhP~L~~~~l~~l-----------~~~~lv~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L 303 (1179)
|++|.|++|||||||+.+.-..+ .-..++.+|||+.+|+.+|..|.+.|||||||+||+.++++|++||
T Consensus 640 NimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL 719 (1373)
T KOG0384|consen 640 NIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYL 719 (1373)
T ss_pred HHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHH
Confidence 99999999999999987533221 2234688999999999999999999999999999999999999999
Q ss_pred HHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCc
Q 001037 304 QWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQK 383 (1179)
Q Consensus 304 ~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQk 383 (1179)
..++|+|-+|||++..+-|+++|+.||+++++-||||+||+|||+||||.+||||||||.+|||+.+.||+.|||||||+
T Consensus 720 ~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQk 799 (1373)
T KOG0384|consen 720 SLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQK 799 (1373)
T ss_pred HHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEeehhhhhhhhhhhhhccCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHhcccccccccH--H
Q 001037 384 REVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH--E 461 (1179)
Q Consensus 384 keV~VyrLvaVEE~I~~~q~ek~~~~~~tv~~~~~l~Gk~~~~gSIEE~Il~~Lq~~K~dla~~Vi~ag~Fd~~~~~--e 461 (1179)
+.|+||+|++ .+|+|+-|+++ +..|+-|+..||+.+.+....+. .
T Consensus 800 k~VnVYRLVT--------------------------------k~TvEeEilER-Ak~KmvLD~aVIQ~m~t~~~~s~~~~ 846 (1373)
T KOG0384|consen 800 KHVNVYRLVT--------------------------------KNTVEEEILER-AKLKMVLDHAVIQRMDTKGKTSKSNP 846 (1373)
T ss_pred ceEEEEEEec--------------------------------CCchHHHHHHH-HHHHhhhHHHHHHhhccccccCCCCC
Confidence 9999999998 69999999997 58899999999998876332211 1
Q ss_pred HHHHHHHHHHhhhh--cccc--cccCCCCHHHHHHHHhcCh
Q 001037 462 ERRMTLETLLHDEE--RYQE--TVHDVPSLQEVNRMIARSE 498 (1179)
Q Consensus 462 Er~~~Le~ll~~e~--~~~e--~~~~v~~~~eln~liaRse 498 (1179)
=.+..|.+||.-.. .+.+ ....-+...+|+++|.|.+
T Consensus 847 f~K~ELsaILKfGA~~lfke~ene~s~~~e~DIDeIL~rae 887 (1373)
T KOG0384|consen 847 FSKEELSAILKFGAYELFKEEENEESKFCEMDIDEILERAE 887 (1373)
T ss_pred CCHHHHHHHHHhchHHhhhccccccccccccCHHHHHhhcc
Confidence 12345666665322 1111 1112233356777776554
No 4
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1.5e-68 Score=671.17 Aligned_cols=438 Identities=38% Similarity=0.648 Sum_probs=376.5
Q ss_pred ChhHHHHHHHHcCCCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchhhhccCCccEEEEcCCccCCChhhHH
Q 001037 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVL 80 (1179)
Q Consensus 1 LsQW~~Ef~Kw~P~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriKN~~Sk~ 80 (1179)
|.||..||.+|+|.+++++|+|+...|............|+||||||+++.++...|.++.|++|||||||++||..|++
T Consensus 231 L~nW~~Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Skl 310 (1033)
T PLN03142 231 LGNWMNEIRRFCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLL 310 (1033)
T ss_pred HHHHHHHHHHHCCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHH
Confidence 57999999999999999999999988877655555567899999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCCCCchhHHHHHHHHHHHHHH
Q 001037 81 ARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 160 (1179)
Q Consensus 81 tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~ee~~~ii~rL~ 160 (1179)
++++..+++.+||+|||||++|++.|||+||+||.|++|++...|..||...... .....+.+||
T Consensus 311 skalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~---------------~~~e~i~~L~ 375 (1033)
T PLN03142 311 SKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGEN---------------DQQEVVQQLH 375 (1033)
T ss_pred HHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHcccccc---------------chHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999862110 1123567899
Q ss_pred HhhhhhhhhhhhhhhhcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHHHHHHHHH
Q 001037 161 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 240 (1179)
Q Consensus 161 kvL~pf~LRRtKkDV~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL~~~l~~L 240 (1179)
.+|+||++||+|.+|...||++.+.+++|.||+.|+.+|..+.......+. . ......+++.+++|
T Consensus 376 ~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~---------~-----g~~~~~LlnilmqL 441 (1033)
T PLN03142 376 KVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVN---------A-----GGERKRLLNIAMQL 441 (1033)
T ss_pred HHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHh---------c-----cccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988754221110 0 01234578899999
Q ss_pred HHHcCCCCCCCCccc---ccchhhhhcccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCC
Q 001037 241 RKTCNHPLLNYPYFS---DLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 317 (1179)
Q Consensus 241 RkicnhP~L~~~~l~---~l~~~~lv~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGst 317 (1179)
|++|+||+++..... ......++..|+|+.+|+.+|..+...|+||||||||+.++++|+++|..+|+.|++|+|++
T Consensus 442 Rk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGst 521 (1033)
T PLN03142 442 RKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNT 521 (1033)
T ss_pred HHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCC
Confidence 999999998653221 22345567889999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeehhh
Q 001037 318 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397 (1179)
Q Consensus 318 s~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~ 397 (1179)
+..+|+.+|+.||++++..+|||+||+|||+||||+.|++||+||++|||+.++||+||||||||+++|+||+|++
T Consensus 522 s~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt---- 597 (1033)
T PLN03142 522 GGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCT---- 597 (1033)
T ss_pred CHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEe----
Confidence 9999999999999877778899999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhhhhhhhccCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhhhcc
Q 001037 398 ISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERY 477 (1179)
Q Consensus 398 I~~~q~ek~~~~~~tv~~~~~l~Gk~~~~gSIEE~Il~~Lq~~K~dla~~Vi~ag~Fd~~~~~eEr~~~Le~ll~~e~~~ 477 (1179)
.+|||+.|+++ +..|+.++..|++.|.+..... .....|.+++......
T Consensus 598 ----------------------------~gTIEEkIler-a~~Kl~Ld~~Vi~~g~~~~~~~--~~~~eL~~ll~~ga~~ 646 (1033)
T PLN03142 598 ----------------------------EYTIEEKVIER-AYKKLALDALVIQQGRLAEQKT--VNKDELLQMVRYGAEM 646 (1033)
T ss_pred ----------------------------CCcHHHHHHHH-HHHHHHHHHHHHhcCccccccc--CCHHHHHHHHHhChHH
Confidence 59999999985 6889999999999988764321 1123455666543221
Q ss_pred -cccccCCCCHHHHHHHHhcChhHHH
Q 001037 478 -QETVHDVPSLQEVNRMIARSEDEVE 502 (1179)
Q Consensus 478 -~e~~~~v~~~~eln~liaRseeE~~ 502 (1179)
........++++|+.+|+|+++...
T Consensus 647 ~f~~~~~~~~~~did~il~~~~~~~~ 672 (1033)
T PLN03142 647 VFSSKDSTITDEDIDRIIAKGEEATA 672 (1033)
T ss_pred hhhccCCCCCHHHHHHHHHhcHHHHH
Confidence 1222335788999999999998764
No 5
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=5.6e-69 Score=640.62 Aligned_cols=415 Identities=38% Similarity=0.658 Sum_probs=358.4
Q ss_pred ChhHHHHHHHHcCCCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchhhhccCCccEEEEcCCccCCChhhHH
Q 001037 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVL 80 (1179)
Q Consensus 1 LsQW~~Ef~Kw~P~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriKN~~Sk~ 80 (1179)
|-||..||++|||+++|+.|.|+..+|+......+.-..|+||||||..+..+...|...+|.|+|+||||+|||..|++
T Consensus 677 iLnWEMElKRwcPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqr 756 (1958)
T KOG0391|consen 677 ILNWEMELKRWCPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQR 756 (1958)
T ss_pred hhhhhHHHhhhCCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHH
Confidence 35999999999999999999999999988877766677899999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCCCCchhHHHHHHHHHHHHHH
Q 001037 81 ARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 160 (1179)
Q Consensus 81 tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~ee~~~ii~rL~ 160 (1179)
+++|..+++.+||||||||+||++.|||+|+.||+|.+|.+.+.|..||..|+....... .+.....+.+||
T Consensus 757 WQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgs--------qeyn~klV~RLH 828 (1958)
T KOG0391|consen 757 WQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGS--------QEYNHKLVIRLH 828 (1958)
T ss_pred HHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccc--------hhhchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999986432111 111234578999
Q ss_pred HhhhhhhhhhhhhhhhcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHHHHHHHHH
Q 001037 161 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 240 (1179)
Q Consensus 161 kvL~pf~LRRtKkDV~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL~~~l~~L 240 (1179)
++|+||+|||+|.||+++||.|.+++|+|.||.-|+.+|+.+..... .+..+. ...+.++.|++|+|
T Consensus 829 kVlrPfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~-------TKetLk------SGhfmsVlnilmqL 895 (1958)
T KOG0391|consen 829 KVLRPFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPG-------TKETLK------SGHFMSVLNILMQL 895 (1958)
T ss_pred HHhHHHHHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccc-------hhhHhh------cCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999997765321 112221 12467899999999
Q ss_pred HHHcCCCCCCCCc------------------------------------------------------------------c
Q 001037 241 RKTCNHPLLNYPY------------------------------------------------------------------F 254 (1179)
Q Consensus 241 RkicnhP~L~~~~------------------------------------------------------------------l 254 (1179)
|++||||.||.+. +
T Consensus 896 rKvCNHPnLfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~l 975 (1958)
T KOG0391|consen 896 RKVCNHPNLFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQL 975 (1958)
T ss_pred HHHcCCCCcCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccc
Confidence 9999998551100 0
Q ss_pred ---------------------------------------------------------------c----------------
Q 001037 255 ---------------------------------------------------------------S---------------- 255 (1179)
Q Consensus 255 ---------------------------------------------------------------~---------------- 255 (1179)
+
T Consensus 976 s~~~rPp~pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~ 1055 (1958)
T KOG0391|consen 976 SLRGRPPIPTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQL 1055 (1958)
T ss_pred cCCCCCCCccccccccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCcccc
Confidence 0
Q ss_pred ---------------------------------------c----------------------------------------
Q 001037 256 ---------------------------------------D---------------------------------------- 256 (1179)
Q Consensus 256 ---------------------------------------~---------------------------------------- 256 (1179)
+
T Consensus 1056 ~~svl~~~sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql 1135 (1958)
T KOG0391|consen 1056 QGSVLQIVSVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQL 1135 (1958)
T ss_pred ccceeeeccccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHH
Confidence 0
Q ss_pred ------------------c------ch-----------------------------------------------------
Q 001037 257 ------------------L------SK----------------------------------------------------- 259 (1179)
Q Consensus 257 ------------------l------~~----------------------------------------------------- 259 (1179)
+ ..
T Consensus 1136 ~erl~ri~~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp 1215 (1958)
T KOG0391|consen 1136 KERLDRIYLVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPP 1215 (1958)
T ss_pred HHHHHHHhhccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCc
Confidence 0 00
Q ss_pred -------------------------------------hhhhcccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHH
Q 001037 260 -------------------------------------DFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEY 302 (1179)
Q Consensus 260 -------------------------------------~~lv~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~ 302 (1179)
..+-..|||++.|.-+|.+|+..|||||||+||+.++|+|+.+
T Consensus 1216 ~~~~r~r~~~~qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqF 1295 (1958)
T KOG0391|consen 1216 LYSHRMRILRQQLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQF 1295 (1958)
T ss_pred ccchHHHHHHHHHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHH
Confidence 0011246899999999999999999999999999999999999
Q ss_pred HHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCC
Q 001037 303 LQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ 382 (1179)
Q Consensus 303 L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQ 382 (1179)
|..+|+.|++|||.++.++|+.++++||. |..+++||+||++||.||||+.||||||||.+|||.++.||.+|+|||||
T Consensus 1296 LnyHgylY~RLDg~t~vEqRQaLmerFNa-D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGq 1374 (1958)
T KOG0391|consen 1296 LNYHGYLYVRLDGNTSVEQRQALMERFNA-DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQ 1374 (1958)
T ss_pred HhhcceEEEEecCCccHHHHHHHHHHhcC-CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcC
Confidence 99999999999999999999999999997 99999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEEeehhhhhhhhhhhhhccCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHhcccccccccHHH
Q 001037 383 KREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEE 462 (1179)
Q Consensus 383 kkeV~VyrLvaVEE~I~~~q~ek~~~~~~tv~~~~~l~Gk~~~~gSIEE~Il~~Lq~~K~dla~~Vi~ag~Fd~~~~~eE 462 (1179)
+++|+||+|++ ..|||+.|++. +..|..+.+.+|+.|.|...- =
T Consensus 1375 tRDVHIYRLIS--------------------------------e~TIEeniLkk-anqKr~L~evaiqggdfTt~f---f 1418 (1958)
T KOG0391|consen 1375 TRDVHIYRLIS--------------------------------ERTIEENILKK-ANQKRMLDEVAIQGGDFTTAF---F 1418 (1958)
T ss_pred ccceEEEEeec--------------------------------cchHHHHHHhh-hhHHHHHHHHhhccCCccHHH---H
Confidence 99999999987 47999999986 467888999999999996542 2
Q ss_pred HHHHHHHHHhh
Q 001037 463 RRMTLETLLHD 473 (1179)
Q Consensus 463 r~~~Le~ll~~ 473 (1179)
+...+.+||.-
T Consensus 1419 ~q~ti~dLFd~ 1429 (1958)
T KOG0391|consen 1419 KQRTIRDLFDV 1429 (1958)
T ss_pred hhhhHHHHhcC
Confidence 33345566654
No 6
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=7.7e-67 Score=630.97 Aligned_cols=423 Identities=32% Similarity=0.547 Sum_probs=361.8
Q ss_pred hhHHHHHHHHcCCCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchhhhccCCccEEEEcCCccCCChhhHHH
Q 001037 2 SMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLA 81 (1179)
Q Consensus 2 sQW~~Ef~Kw~P~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriKN~~Sk~t 81 (1179)
.+|+.|+.+|+|.++|+.|.|.+..|..+..+ ..+.+|+||||+.+++|...|.++.|.|+|+||+|-|||..++++
T Consensus 1044 GHW~~E~~kf~pfL~v~~yvg~p~~r~~lR~q---~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~ktkl~ 1120 (1549)
T KOG0392|consen 1044 GHWKSEVKKFFPFLKVLQYVGPPAERRELRDQ---YKNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSKTKLT 1120 (1549)
T ss_pred hHHHHHHHHhcchhhhhhhcCChHHHHHHHhh---ccccceEEeeHHHHHHHHHHHHhcccceEEecCcceecchHHHHH
Confidence 58999999999999999999999999887654 346799999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCCCCchhHHHHHHHHHHHHHHH
Q 001037 82 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 161 (1179)
Q Consensus 82 kaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~ee~~~ii~rL~k 161 (1179)
++++.|++.|||+|||||+||++.|||+|++||+|+++++.+.|...|.+|+...... .......|...+.+..||+
T Consensus 1121 kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~---K~Sske~EaG~lAleaLHK 1197 (1549)
T KOG0392|consen 1121 KAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDP---KSSSKEQEAGVLALEALHK 1197 (1549)
T ss_pred HHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCc---ccchhHHHhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998765332 2234566778889999999
Q ss_pred hhhhhhhhhhhhhhhcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHHHHHHHHHH
Q 001037 162 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 241 (1179)
Q Consensus 162 vL~pf~LRRtKkDV~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL~~~l~~LR 241 (1179)
.+-|||+||+|.||+.+||||+.+..+|+|++.|+++|+.+.................... . ....+++.+..||
T Consensus 1198 qVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~g-t----~~~HvFqaLqYlr 1272 (1549)
T KOG0392|consen 1198 QVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLG-T----DKTHVFQALQYLR 1272 (1549)
T ss_pred HHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccC-c----chHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887632222111110000000 0 1456778889999
Q ss_pred HHcCCCCCCCCc----ccccc------hhhh--hcccCHHHHHHHHHHHHh--------------hcCCeEEEeehhHHH
Q 001037 242 KTCNHPLLNYPY----FSDLS------KDFL--VKSCGKLWILDRILIKLQ--------------RTGHRVLLFSTMTKL 295 (1179)
Q Consensus 242 kicnhP~L~~~~----l~~l~------~~~l--v~~SgKl~~L~~IL~el~--------------~~g~KVLIFSqft~~ 295 (1179)
+.|+||.+.... +.... ...+ +..++|+.+|.++|.+.- ..+||+|||||+..+
T Consensus 1273 KLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~m 1352 (1549)
T KOG0392|consen 1273 KLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSM 1352 (1549)
T ss_pred HhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHH
Confidence 999999997653 21111 1112 578899999999998762 146999999999999
Q ss_pred HHHHHHHHHHc---CCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHH
Q 001037 296 LDILEEYLQWR---QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQ 372 (1179)
Q Consensus 296 ldiLe~~L~~~---Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQ 372 (1179)
++++++-|-+. .+.|+++||++++.+|.+++++||+ ++.+.|+|++|.+||.||||++||||||++.+|||+++.|
T Consensus 1353 lDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~-DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQ 1431 (1549)
T KOG0392|consen 1353 LDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNE-DPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQ 1431 (1549)
T ss_pred HHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcC-CCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHH
Confidence 99999988765 5679999999999999999999996 8899999999999999999999999999999999999999
Q ss_pred HhhcccccCCcceEEEEEEEeehhhhhhhhhhhhhccCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHhcc
Q 001037 373 AVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 452 (1179)
Q Consensus 373 AiGRIhRIGQkkeV~VyrLvaVEE~I~~~q~ek~~~~~~tv~~~~~l~Gk~~~~gSIEE~Il~~Lq~~K~dla~~Vi~ag 452 (1179)
|++|||||||++.|+||||++ +|++||+|+. +|+.|+++|+.||++.
T Consensus 1432 AMDRAHRIGQKrvVNVyRlIt--------------------------------rGTLEEKVMg-LQkFKmnvAntvInqq 1478 (1549)
T KOG0392|consen 1432 AMDRAHRIGQKRVVNVYRLIT--------------------------------RGTLEEKVMG-LQKFKMNVANTVINQQ 1478 (1549)
T ss_pred HHHHHHhhcCceeeeeeeehh--------------------------------cccHHHHHhh-HHHHhhHHHHHHHhcc
Confidence 999999999999999999987 6999999997 9999999999999886
Q ss_pred cccccccHHHHHHHHHHHHh
Q 001037 453 RFDQRTTHEERRMTLETLLH 472 (1179)
Q Consensus 453 ~Fd~~~~~eEr~~~Le~ll~ 472 (1179)
.-.-.+.... .|.++|.
T Consensus 1479 Nasl~tM~Td---qLLdlF~ 1495 (1549)
T KOG0392|consen 1479 NASLETMDTD---QLLDLFT 1495 (1549)
T ss_pred cccccccCHH---HHHHHhc
Confidence 5554443332 3445555
No 7
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-66 Score=612.10 Aligned_cols=401 Identities=38% Similarity=0.590 Sum_probs=338.8
Q ss_pred ChhHHHHHHHHcCCCcEEEEEcChhHHhHHHhhHh-hhCCCCEEEEcHHHHHh---chhhhccCCccEEEEcCCccCCCh
Q 001037 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV-AALKFNVLVTTYEFIMY---DRSKLSKVDWKYIIIDEAQRMKDR 76 (1179)
Q Consensus 1 LsQW~~Ef~Kw~P~l~Vvvy~G~~~~R~~l~~~~~-~~~~~dVVITTYE~L~~---d~~~L~ki~wdlVIIDEAHriKN~ 76 (1179)
|.||..||.+|||+++|..|+|+..+|+.+..... ...+|||+||||..+.. ++.+|.+.+|++||.||||.+||.
T Consensus 460 leNWlrEf~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~ 539 (941)
T KOG0389|consen 460 LENWLREFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNR 539 (941)
T ss_pred HHHHHHHHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhcc
Confidence 57999999999999999999999999988764433 23489999999999875 578899999999999999999999
Q ss_pred hhHHHHHHHhhcCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCCh-HHHHHHhcCccccCCCCCCCCchhHHHHHHHHH
Q 001037 77 ESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR-KAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 155 (1179)
Q Consensus 77 ~Sk~tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~-~~F~~~f~~p~~~~~~~~~~e~~~l~~ee~~~i 155 (1179)
.|.+|+.|..+++..||||||||+||++.|||+||.|++|.+|.+. .++..-|...-... ...+...+. + ..
T Consensus 540 ~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d---~d~e~~~l~-q---er 612 (941)
T KOG0389|consen 540 TSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSD---GDIENALLS-Q---ER 612 (941)
T ss_pred chHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCcc---chhhHHHHH-H---HH
Confidence 9999999999999999999999999999999999999999999765 56666665422211 111111111 1 24
Q ss_pred HHHHHHhhhhhhhhhhhhhhhcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHHHH
Q 001037 156 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNN 235 (1179)
Q Consensus 156 i~rL~kvL~pf~LRRtKkDV~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL~~ 235 (1179)
|.|-..++.||+|||.|.+|+.+||+|..++.+|+|+..|+.+|+.+.+........ ...+ . ...+ .+
T Consensus 613 IsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~------~~~n----s-~~~~-~~ 680 (941)
T KOG0389|consen 613 ISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNE------VSKN----S-ELKS-GN 680 (941)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccc------cccc----c-cccc-ch
Confidence 778889999999999999999999999999999999999999999887654211111 1111 0 0111 56
Q ss_pred HHHHHHHHcCCCCCCCCcccc-------------------------------------------------cchhhhhccc
Q 001037 236 RCMELRKTCNHPLLNYPYFSD-------------------------------------------------LSKDFLVKSC 266 (1179)
Q Consensus 236 ~l~~LRkicnhP~L~~~~l~~-------------------------------------------------l~~~~lv~~S 266 (1179)
.+|+||++++||.|+-..+.+ ...+..+-.|
T Consensus 681 vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdS 760 (941)
T KOG0389|consen 681 VLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDS 760 (941)
T ss_pred HHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhh
Confidence 899999999999884322211 0122345678
Q ss_pred CHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhh
Q 001037 267 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 346 (1179)
Q Consensus 267 gKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AG 346 (1179)
||+..|..+|.++...|+|||||+|||.++++|+.+|.-.++.|+++||+|...+|+.+|..|+. +.+++|||+||+||
T Consensus 761 gK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~-d~difVFLLSTKAG 839 (941)
T KOG0389|consen 761 GKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNT-DKDIFVFLLSTKAG 839 (941)
T ss_pred hhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhcc-CCceEEEEEeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999997 88999999999999
Q ss_pred ccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeehhhhhhhhhhhhhccCCccccccccccccccc
Q 001037 347 GRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYI 426 (1179)
Q Consensus 347 geGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~I~~~q~ek~~~~~~tv~~~~~l~Gk~~~~ 426 (1179)
|.||||++||+||++|.++||..+.||.+||||+||+++|+||+|++ +
T Consensus 840 G~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLIt--------------------------------k 887 (941)
T KOG0389|consen 840 GFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLIT--------------------------------K 887 (941)
T ss_pred cceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEe--------------------------------c
Confidence 99999999999999999999999999999999999999999999988 6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcccc
Q 001037 427 GSIEGLIRNNIQQYKIDMADEVINAGRF 454 (1179)
Q Consensus 427 gSIEE~Il~~Lq~~K~dla~~Vi~ag~F 454 (1179)
+||||.|+. |++.|+.+...+...++-
T Consensus 888 ~TIEE~I~~-lA~~KL~Le~~lt~~~k~ 914 (941)
T KOG0389|consen 888 STIEEGILR-LAKTKLALEADLTEDGKG 914 (941)
T ss_pred CcHHHHHHH-HHHHhhhhhhhhccCccc
Confidence 999999997 789999998887765443
No 8
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=4e-66 Score=608.72 Aligned_cols=399 Identities=32% Similarity=0.559 Sum_probs=343.0
Q ss_pred ChhHHHHHHHHcCCCcEEEEEcChhH-H---------hHHHhhHhhhCCCCEEEEcHHHHHhchhhhccCCccEEEEcCC
Q 001037 1 MSMWQSELHKWLPSVSCIYYVGAKDQ-R---------SRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEA 70 (1179)
Q Consensus 1 LsQW~~Ef~Kw~P~l~Vvvy~G~~~~-R---------~~l~~~~~~~~~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEA 70 (1179)
|.||.+||.+|+|.++|.+|+++... | ..+.-.........|+||||+.+....+.+..+.|++||+||+
T Consensus 267 i~qW~~E~~~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEG 346 (923)
T KOG0387|consen 267 IHQWMKEFQTWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEG 346 (923)
T ss_pred HHHHHHHHHHhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCc
Confidence 57999999999999999999998652 1 1111111233456799999999999999999999999999999
Q ss_pred ccCCChhhHHHHHHHhhcCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCCCCchhHHHH
Q 001037 71 QRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETE 150 (1179)
Q Consensus 71 HriKN~~Sk~tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~e 150 (1179)
|+|||++|+++.+++.+++.+|++|||||+||++.|||+|+.|+.|+.+++...|.+.|..|+..++....... ...
T Consensus 347 H~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~---qv~ 423 (923)
T KOG0387|consen 347 HRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPR---QVQ 423 (923)
T ss_pred ccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHH---HHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988876554433 333
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhc-CCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHH
Q 001037 151 KKVIIIHRLHQILEPFMLRRRVEDVEG-SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKV 229 (1179)
Q Consensus 151 e~~~ii~rL~kvL~pf~LRRtKkDV~~-~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~ 229 (1179)
....+...|+.++.||+|||+|.||.. .||.|.+++++|.||+.|+.+|+.+.+...+. ..+.+.
T Consensus 424 ~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~-------~i~ng~------- 489 (923)
T KOG0387|consen 424 TAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVN-------KILNGK------- 489 (923)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHH-------HHHcCC-------
Confidence 334466779999999999999999999 99999999999999999999999887653221 111111
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCcc---cccchh-hhhcccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHH-
Q 001037 230 YKTLNNRCMELRKTCNHPLLNYPYF---SDLSKD-FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ- 304 (1179)
Q Consensus 230 ~~sL~~~l~~LRkicnhP~L~~~~l---~~l~~~-~lv~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~- 304 (1179)
..++.-+.-||++||||.+....- ....+. ..+..|||+.+|..+|..+...|+|||+|+|...++++|+..|.
T Consensus 490 -~~~l~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~ 568 (923)
T KOG0387|consen 490 -RNCLSGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRR 568 (923)
T ss_pred -ccceechHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHh
Confidence 112233456999999999976631 111111 45778999999999999999999999999999999999999999
Q ss_pred HcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcc
Q 001037 305 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 384 (1179)
Q Consensus 305 ~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkk 384 (1179)
..||.|+++||.|+...|+.+|++||+ +..++|||++|++||+||||+.||+||+|||+|||..+.||..|||||||++
T Consensus 569 ~~~ysylRmDGtT~~~~R~~lVd~Fne-~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkk 647 (923)
T KOG0387|consen 569 AKGYSYLRMDGTTPAALRQKLVDRFNE-DESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKK 647 (923)
T ss_pred cCCceEEEecCCCccchhhHHHHhhcC-CCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCcc
Confidence 789999999999999999999999996 7789999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEeehhhhhhhhhhhhhccCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHhc
Q 001037 385 EVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA 451 (1179)
Q Consensus 385 eV~VyrLvaVEE~I~~~q~ek~~~~~~tv~~~~~l~Gk~~~~gSIEE~Il~~Lq~~K~dla~~Vi~a 451 (1179)
.|.||+|++ .+||||+|+.+ |-+|..+.+.++..
T Consensus 648 dV~VYRL~t--------------------------------~gTIEEkiY~r-QI~Kq~Ltn~il~~ 681 (923)
T KOG0387|consen 648 DVVVYRLMT--------------------------------AGTIEEKIYHR-QIFKQFLTNRILKN 681 (923)
T ss_pred ceEEEEEec--------------------------------CCcHHHHHHHH-HHHHHHHHHHHhcC
Confidence 999999988 58999999975 67899998888754
No 9
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=1.6e-65 Score=591.74 Aligned_cols=392 Identities=38% Similarity=0.683 Sum_probs=343.9
Q ss_pred ChhHHHHHHHHcCCCcEEEEEcChhHHhHHHhhHh------hhCCCCEEEEcHHHHHhchhhhccCCccEEEEcCCccCC
Q 001037 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEV------AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK 74 (1179)
Q Consensus 1 LsQW~~Ef~Kw~P~l~Vvvy~G~~~~R~~l~~~~~------~~~~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriK 74 (1179)
|.||.+||.+|+|.++++.|.|+..+|+-+..... ....|+|+||||+++..|...|.+++|.|+|+|||+.||
T Consensus 629 L~NWaqEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIK 708 (1185)
T KOG0388|consen 629 LHNWAQEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIK 708 (1185)
T ss_pred HhHHHHHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhh
Confidence 57999999999999999999999999876643221 345799999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHhhcCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCCCCchhHHHHHHHH
Q 001037 75 DRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVI 154 (1179)
Q Consensus 75 N~~Sk~tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~ee~~~ 154 (1179)
...|.+++.|..++|++||||||||+||+..|||+||.|++|.+|++...|.+||.+.+........ .....
T Consensus 709 SSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~--------tlneq 780 (1185)
T KOG0388|consen 709 SSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNT--------TLNEQ 780 (1185)
T ss_pred hhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcC--------CcCHH
Confidence 9999999999999999999999999999999999999999999999999999999987654321111 11122
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHHH
Q 001037 155 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLN 234 (1179)
Q Consensus 155 ii~rL~kvL~pf~LRRtKkDV~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL~ 234 (1179)
.+.|||.+|.||||||.|++|..+|..++++.|+|+||.-|+.+|+.|..... ...+.
T Consensus 781 qL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS----------------------~~E~~ 838 (1185)
T KOG0388|consen 781 QLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS----------------------SMEME 838 (1185)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh----------------------HHHHH
Confidence 47899999999999999999999999999999999999999999998876422 22344
Q ss_pred HHHHHHHHHcCCCCCCCCc-------------------------------------------------------------
Q 001037 235 NRCMELRKTCNHPLLNYPY------------------------------------------------------------- 253 (1179)
Q Consensus 235 ~~l~~LRkicnhP~L~~~~------------------------------------------------------------- 253 (1179)
+++|+||++||||.||...
T Consensus 839 ~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~G 918 (1185)
T KOG0388|consen 839 NLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNG 918 (1185)
T ss_pred HHHHHHHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcC
Confidence 5889999999998652100
Q ss_pred ------cc---------c--------------------------------------------------------------
Q 001037 254 ------FS---------D-------------------------------------------------------------- 256 (1179)
Q Consensus 254 ------l~---------~-------------------------------------------------------------- 256 (1179)
+. .
T Consensus 919 eg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead 998 (1185)
T KOG0388|consen 919 EGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEAD 998 (1185)
T ss_pred CCcchhcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccC
Confidence 00 0
Q ss_pred -------------------cchhhhhcccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCC
Q 001037 257 -------------------LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 317 (1179)
Q Consensus 257 -------------------l~~~~lv~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGst 317 (1179)
.+....+..|||+..|+.+|.+|.+.||+||+|.||+.++++|++||..+++.|++++|+.
T Consensus 999 ~PeId~E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSs 1078 (1185)
T KOG0388|consen 999 LPEIDLENRHIPLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSS 1078 (1185)
T ss_pred CCCCCccccCcccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcc
Confidence 0001124567999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeehhh
Q 001037 318 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397 (1179)
Q Consensus 318 s~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~ 397 (1179)
+..+|..++.+|+. ++++|||+||+|||.||||++||+|||||.+|||..+.||++|+||+||++.|+||+|++
T Consensus 1079 k~~dRrd~vrDwQ~--sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~---- 1152 (1185)
T KOG0388|consen 1079 KASDRRDVVRDWQA--SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLIT---- 1152 (1185)
T ss_pred hhhHHHHHHhhccC--CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecc----
Confidence 99999999999994 889999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhhhhhhhccCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 001037 398 ISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQR 457 (1179)
Q Consensus 398 I~~~q~ek~~~~~~tv~~~~~l~Gk~~~~gSIEE~Il~~Lq~~K~dla~~Vi~ag~Fd~~ 457 (1179)
.++|||+|+.+ +..|.++...|+.++.|...
T Consensus 1153 ----------------------------rgTvEEk~l~r-A~qK~~vQq~Vm~G~~~qg~ 1183 (1185)
T KOG0388|consen 1153 ----------------------------RGTVEEKVLER-ANQKDEVQQMVMHGNIFQGE 1183 (1185)
T ss_pred ----------------------------cccHHHHHHHH-hhhHHHHHHHHHcCCcccCC
Confidence 69999999997 47799999999998887653
No 10
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=3.6e-53 Score=512.43 Aligned_cols=397 Identities=30% Similarity=0.465 Sum_probs=322.2
Q ss_pred ChhHHHHHHHHcC--CCcEEEEEcChhHH----hHHHhhHhhhCCCCEEEEcHHHHHhchhhhccCCccEEEEcCCccCC
Q 001037 1 MSMWQSELHKWLP--SVSCIYYVGAKDQR----SRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK 74 (1179)
Q Consensus 1 LsQW~~Ef~Kw~P--~l~Vvvy~G~~~~R----~~l~~~~~~~~~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriK 74 (1179)
|.||.+||.+|.. .+..+.+.|..... ..+.......-..-|+|.||+++..+...+....+++||+||+|++|
T Consensus 310 v~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlk 389 (776)
T KOG0390|consen 310 VNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLK 389 (776)
T ss_pred HHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCcc
Confidence 5799999999986 56777777766541 11111111223457999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHhhcCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCCCCchhHHHHHHHH
Q 001037 75 DRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVI 154 (1179)
Q Consensus 75 N~~Sk~tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~ee~~~ 154 (1179)
|..+.++++|..+.+++|++|||||+||++.|+|++|+|++|+++++...|...|..+...+......+..... ++
T Consensus 390 N~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~-~~--- 465 (776)
T KOG0390|consen 390 NSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRER-EE--- 465 (776)
T ss_pred chhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhh-HH---
Confidence 99999999999999999999999999999999999999999999999999999999988776554433322222 22
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHHH
Q 001037 155 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLN 234 (1179)
Q Consensus 155 ii~rL~kvL~pf~LRRtKkDV~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL~ 234 (1179)
-+..|..++..|++||+-..+...||.+.+++|.|.+++.|..+|..+.... .. .. .....+
T Consensus 466 rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~-------~~----------~~~~~l 527 (776)
T KOG0390|consen 466 RLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KM-------RT----------LKGYAL 527 (776)
T ss_pred HHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hh-------hh----------hhcchh
Confidence 3788999999999999998899999999999999999999999999887642 10 00 011134
Q ss_pred HHHHHHHHHcCCCCCCC-Ccccc----c-c------------hhhhhcccCHHHHHHHHHHHHhh-cCCeEEEeehhHHH
Q 001037 235 NRCMELRKTCNHPLLNY-PYFSD----L-S------------KDFLVKSCGKLWILDRILIKLQR-TGHRVLLFSTMTKL 295 (1179)
Q Consensus 235 ~~l~~LRkicnhP~L~~-~~l~~----l-~------------~~~lv~~SgKl~~L~~IL~el~~-~g~KVLIFSqft~~ 295 (1179)
..+..|.++|+||.|.. ..... . . .......++|+..|+.+|....+ .-.++++.++++.+
T Consensus 528 ~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~t 607 (776)
T KOG0390|consen 528 ELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQT 607 (776)
T ss_pred hHHHHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHH
Confidence 55678999999999864 11000 0 0 00112237899999999865543 34678888899999
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhh
Q 001037 296 LDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVA 375 (1179)
Q Consensus 296 ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiG 375 (1179)
+++++..+.++|+.++++||.|+..+|+.+|+.||++.+..+|||+|+.|||+||||.+|++||+||++|||+.+.||++
T Consensus 608 ldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAma 687 (776)
T KOG0390|consen 608 LDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMA 687 (776)
T ss_pred HHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHH
Confidence 99999999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred cccccCCcceEEEEEEEeehhhhhhhhhhhhhccCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHhcc
Q 001037 376 RAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 452 (1179)
Q Consensus 376 RIhRIGQkkeV~VyrLvaVEE~I~~~q~ek~~~~~~tv~~~~~l~Gk~~~~gSIEE~Il~~Lq~~K~dla~~Vi~ag 452 (1179)
||||.||+++|+||+|++ .|||||.|+.+ |..|.-|-..|+...
T Consensus 688 R~~RdGQKk~v~iYrLla--------------------------------tGtiEEk~~qr-q~~K~~lS~~v~~~~ 731 (776)
T KOG0390|consen 688 RAWRDGQKKPVYIYRLLA--------------------------------TGTIEEKIYQR-QTHKEGLSSMVFDEE 731 (776)
T ss_pred HhccCCCcceEEEEEeec--------------------------------CCCchHHHHHH-HHHhhhhhheEEecc
Confidence 999999999999999988 36777777764 445555555555443
No 11
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=5.1e-51 Score=481.50 Aligned_cols=477 Identities=24% Similarity=0.380 Sum_probs=359.3
Q ss_pred ChhHHHHHHHHcCCC------cEEEEE--cChhHHhHHHhhHhhhCCCCEEEEcHHHHHhc---------------hhhh
Q 001037 1 MSMWQSELHKWLPSV------SCIYYV--GAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD---------------RSKL 57 (1179)
Q Consensus 1 LsQW~~Ef~Kw~P~l------~Vvvy~--G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d---------------~~~L 57 (1179)
+.||.+||.+|.+++ .|..+. ..+..|..++. .+...-.|+|+-|++++.. ...|
T Consensus 740 ~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~--~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~l 817 (1567)
T KOG1015|consen 740 ALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQ--RWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKAL 817 (1567)
T ss_pred HHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHH--HHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhc
Confidence 469999999999863 222222 22344444443 3344559999999998763 2234
Q ss_pred ccCCccEEEEcCCccCCChhhHHHHHHHhhcCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCC
Q 001037 58 SKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEG 137 (1179)
Q Consensus 58 ~ki~wdlVIIDEAHriKN~~Sk~tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~ 137 (1179)
..-.+|+||+||||-+||..+.+++++..+++++||+|||||+||+|.|++++++|+.|+++++...|.++|..|+.++.
T Consensus 818 vdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~nGq 897 (1567)
T KOG1015|consen 818 VDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQNGQ 897 (1567)
T ss_pred cCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCccccCc
Confidence 55689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHH
Q 001037 138 PTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKR 217 (1179)
Q Consensus 138 ~~~~~e~~~l~~ee~~~ii~rL~kvL~pf~LRRtKkDV~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~ 217 (1179)
....+..+...... ..+-|+..|..|+-|+.-.-+...|||+++++|.+.||+.|..+|+.+..... ..+......
T Consensus 898 ~~dST~~DVr~Mk~---RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~-~~G~d~eg~ 973 (1567)
T KOG1015|consen 898 CADSTMVDVRVMKK---RSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHLT-GVGNDSEGG 973 (1567)
T ss_pred cCCCcHHHHHHHHH---HHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhcc-ccCCccccc
Confidence 77665544333332 24558899999999998888888999999999999999999999999988322 222221111
Q ss_pred hhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC------------------Ccc---c---------------------
Q 001037 218 RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY------------------PYF---S--------------------- 255 (1179)
Q Consensus 218 ~l~~~~~~~~~~~~sL~~~l~~LRkicnhP~L~~------------------~~l---~--------------------- 255 (1179)
....+.|+..+..|+++-+||+... .++ .
T Consensus 974 ---------~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~ 1044 (1567)
T KOG1015|consen 974 ---------RGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKK 1044 (1567)
T ss_pred ---------cchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhccccccc
Confidence 1134567788888999999996511 000 0
Q ss_pred ---c----------------------------------------------cc---------------------hhhhhcc
Q 001037 256 ---D----------------------------------------------LS---------------------KDFLVKS 265 (1179)
Q Consensus 256 ---~----------------------------------------------l~---------------------~~~lv~~ 265 (1179)
+ +. ....+..
T Consensus 1045 s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~ 1124 (1567)
T KOG1015|consen 1045 SKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEH 1124 (1567)
T ss_pred ccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhc
Confidence 0 00 0002346
Q ss_pred cCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHH----------------------cCCeEEEEcCCCCHHHHH
Q 001037 266 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----------------------RQLVYRRIDGTTSLEDRE 323 (1179)
Q Consensus 266 SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~----------------------~Gi~~~rIdGsts~eeRe 323 (1179)
|+|+.+|.+||....+-|.|+|||+|....+++|+.+|.. .|..|.+|||++...+|.
T Consensus 1125 SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~ 1204 (1567)
T KOG1015|consen 1125 SGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRK 1204 (1567)
T ss_pred CcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHH
Confidence 7899999999999999999999999999999999999963 267899999999999999
Q ss_pred HHHHHhccCC-CCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeehhhhhhhh
Q 001037 324 SAIVDFNSHD-SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQ 402 (1179)
Q Consensus 324 ~iI~~Fn~~d-s~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~I~~~q 402 (1179)
++...||++. -..++||+||+||++||||-+||+|||||-.|||..+.|+|-|+||+||+++|+||+|++
T Consensus 1205 k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiA--------- 1275 (1567)
T KOG1015|consen 1205 KWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIA--------- 1275 (1567)
T ss_pred HHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhh---------
Confidence 9999999753 346789999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhhccCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhhh-----cc
Q 001037 403 KEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEE-----RY 477 (1179)
Q Consensus 403 ~ek~~~~~~tv~~~~~l~Gk~~~~gSIEE~Il~~Lq~~K~dla~~Vi~ag~Fd~~~~~eEr~~~Le~ll~~e~-----~~ 477 (1179)
.||+|++|+++ |-.|..++-.|++..+.....+.+ .|-.|+.=+. ..
T Consensus 1276 -----------------------qGTmEeKIYkR-QVTKqsls~RVVDeqQv~Rhy~~n----eLteLy~fep~~ddp~s 1327 (1567)
T KOG1015|consen 1276 -----------------------QGTMEEKIYKR-QVTKQSLSFRVVDEQQVERHYTMN----ELTELYTFEPDLDDPNS 1327 (1567)
T ss_pred -----------------------cccHHHHHHHH-HHhHhhhhhhhhhHHHHHHHhhHh----hhHHHhhcCCccCCccc
Confidence 58888888875 566777777777653332222221 2333443322 11
Q ss_pred cccccCCCCHHHHHHHHhcChhHHHHHHHhhhhcC--cchhhcccccchHHHhh
Q 001037 478 QETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFG--WIEEMTRYDQVPKWLRA 529 (1179)
Q Consensus 478 ~e~~~~v~~~~eln~liaRseeE~~lf~~~D~e~~--~~~~l~~~~~~p~~~~~ 529 (1179)
+......|.+..+.++|.-..+-+--+..-|.-+. -.++|+..+.-|.|.-+
T Consensus 1328 Er~~~~lpKdrllae~l~~~q~~i~~y~ehdSll~~~e~eelteee~k~aWaey 1381 (1567)
T KOG1015|consen 1328 ERDTPMLPKDRLLAELLQIHQEHIVGYHEHDSLLDHKEEEELTEEERKAAWAEY 1381 (1567)
T ss_pred ccccccCCchhHHHHHHHHHHHHhhhhhhhhhhhcchhHHHHHHHhhhhhhhhH
Confidence 11233456777777776655544433333332222 12456777778888754
No 12
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=1.6e-50 Score=455.22 Aligned_cols=395 Identities=30% Similarity=0.415 Sum_probs=317.4
Q ss_pred ChhHHHHHHHHc-CCCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhc-----------------hhhhccCCc
Q 001037 1 MSMWQSELHKWL-PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD-----------------RSKLSKVDW 62 (1179)
Q Consensus 1 LsQW~~Ef~Kw~-P~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d-----------------~~~L~ki~w 62 (1179)
|.||.+||.+++ +.+++++|+|.++... ......||||+|||..+... ...|..++|
T Consensus 243 lmQW~nEI~~~T~gslkv~~YhG~~R~~n-----ikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~ 317 (791)
T KOG1002|consen 243 LMQWKNEIERHTSGSLKVYIYHGAKRDKN-----IKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKF 317 (791)
T ss_pred HHHHHHHHHHhccCceEEEEEecccccCC-----HHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhcee
Confidence 579999999998 5789999999865432 23456899999999987653 356888999
Q ss_pred cEEEEcCCccCCChhhHHHHHHHhhcCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChH-----------HHH-----
Q 001037 63 KYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRK-----------AFH----- 126 (1179)
Q Consensus 63 dlVIIDEAHriKN~~Sk~tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~-----------~F~----- 126 (1179)
.+||+||||.||+..|..++++..|.+.+||+|||||+||+..|||+|+.||...+|.-+- .|.
T Consensus 318 ~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c 397 (791)
T KOG1002|consen 318 YRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHC 397 (791)
T ss_pred eeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccC
Confidence 9999999999999999999999999999999999999999999999999999887764321 010
Q ss_pred -----------HHhc----CccccCCCCCCCCchhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc--CCCCceEEEEEe
Q 001037 127 -----------DWFS----QPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG--SLPPKVSIVLRC 189 (1179)
Q Consensus 127 -----------~~f~----~p~~~~~~~~~~e~~~l~~ee~~~ii~rL~kvL~pf~LRRtKkDV~~--~LP~k~e~vV~~ 189 (1179)
.||+ ++++..|... .....+...|.+|..+|+||+|-+-.. .|||++..+-.-
T Consensus 398 ~~c~h~~m~h~~~~n~~mlk~IqkfG~eG----------pGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD 467 (791)
T KOG1002|consen 398 DHCSHNIMQHTCFFNHFMLKPIQKFGVEG----------PGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRD 467 (791)
T ss_pred CcccchhhhhhhhhcccccccchhhcccC----------chHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehh
Confidence 0111 1121111110 111234467889999999999865322 499999888888
Q ss_pred cCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCcc---------------
Q 001037 190 RMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF--------------- 254 (1179)
Q Consensus 190 ~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL~~~l~~LRkicnhP~L~~~~l--------------- 254 (1179)
-++..+..+|+.+.......++.....+.+.+ .|..++.++.+|||++.||+|+...-
T Consensus 468 ~fn~eE~D~YeSLY~dSkrkfntyieeGvvlN-------NYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~ 540 (791)
T KOG1002|consen 468 FFNEEEKDLYESLYKDSKRKFNTYIEEGVVLN-------NYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECG 540 (791)
T ss_pred hhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhh-------hHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeec
Confidence 89999999999887665544444444444433 47889999999999999998843100
Q ss_pred --cccch-----------------------------------------------------------------hhhhcccC
Q 001037 255 --SDLSK-----------------------------------------------------------------DFLVKSCG 267 (1179)
Q Consensus 255 --~~l~~-----------------------------------------------------------------~~lv~~Sg 267 (1179)
.+... -.-++.|.
T Consensus 541 lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsST 620 (791)
T KOG1002|consen 541 LCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSST 620 (791)
T ss_pred ccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchh
Confidence 00000 00245667
Q ss_pred HHHHHHHHHHHHhhcC--CeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhh
Q 001037 268 KLWILDRILIKLQRTG--HRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 345 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g--~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~A 345 (1179)
|+++|.+-|..+.+.. -|.|||+||+.++++|.-.|.+.|+.++.+.|+|+...|...|+.|.+ +.+|+|||+|.+|
T Consensus 621 KIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~n-d~~c~vfLvSLkA 699 (791)
T KOG1002|consen 621 KIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKN-DIDCRVFLVSLKA 699 (791)
T ss_pred HHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhcc-CCCeEEEEEEecc
Confidence 9999998888877654 588999999999999999999999999999999999999999999996 9999999999999
Q ss_pred hccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeehhhhhhhhhhhhhccCCcccccccccccccc
Q 001037 346 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRY 425 (1179)
Q Consensus 346 GgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~I~~~q~ek~~~~~~tv~~~~~l~Gk~~~ 425 (1179)
||..|||+.|++|+++||||||+..-||.+|||||||.++|+|++|+.
T Consensus 700 GGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~i-------------------------------- 747 (791)
T KOG1002|consen 700 GGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCI-------------------------------- 747 (791)
T ss_pred CceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeeh--------------------------------
Confidence 999999999999999999999999999999999999999999999974
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhc
Q 001037 426 IGSIEGLIRNNIQQYKIDMADEVINA 451 (1179)
Q Consensus 426 ~gSIEE~Il~~Lq~~K~dla~~Vi~a 451 (1179)
.+|||++|.+ ||++|.+|+...|+.
T Consensus 748 EnsiE~kIie-LQeKKa~mihaTi~q 772 (791)
T KOG1002|consen 748 ENSIEEKIIE-LQEKKANMIHATIGQ 772 (791)
T ss_pred hccHHHHHHH-HHHHHhhhhhhhcCC
Confidence 5899999997 889999988876654
No 13
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.2e-50 Score=469.81 Aligned_cols=394 Identities=25% Similarity=0.408 Sum_probs=325.5
Q ss_pred ChhHHHHHHHHc--CCCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHh----------chhhhccCCccEEEEc
Q 001037 1 MSMWQSELHKWL--PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMY----------DRSKLSKVDWKYIIID 68 (1179)
Q Consensus 1 LsQW~~Ef~Kw~--P~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~----------d~~~L~ki~wdlVIID 68 (1179)
|.||..||.+-. -.++|++|+|+.. +.+. .-...+||||||||..+.+ ....|..+.|.+||+|
T Consensus 395 i~qW~~Ev~~rl~~n~LsV~~~HG~n~--r~i~--~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILD 470 (901)
T KOG4439|consen 395 IHQWEAEVARRLEQNALSVYLYHGPNK--REIS--AKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILD 470 (901)
T ss_pred HHHHHHHHHHHHhhcceEEEEecCCcc--ccCC--HHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhh
Confidence 579999998887 3579999999864 2221 1235689999999999887 2467889999999999
Q ss_pred CCccCCChhhHHHHHHHhhcCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCCCCchhHH
Q 001037 69 EAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 148 (1179)
Q Consensus 69 EAHriKN~~Sk~tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~ 148 (1179)
|||.+||..++.+.+++.|.+.+||+|||||+||++-|+|+||.||+..+|++...|.+|+...-..+
T Consensus 471 EAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g------------ 538 (901)
T KOG4439|consen 471 EAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGG------------ 538 (901)
T ss_pred hhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccc------------
Confidence 99999999999999999999999999999999999999999999999999999999999887543221
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhc-----CCCCceEEEEEecCCHHHHHHHHHHHHhccccCCch---hHH----
Q 001037 149 TEKKVIIIHRLHQILEPFMLRRRVEDVEG-----SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPE---DEK---- 216 (1179)
Q Consensus 149 ~ee~~~ii~rL~kvL~pf~LRRtKkDV~~-----~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~---~~~---- 216 (1179)
..+|.-+..++||||+|+.+.. .||.+....+.+.|+..+...|+-+.+.....+... ...
T Consensus 539 -------~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~ 611 (901)
T KOG4439|consen 539 -------ANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNND 611 (901)
T ss_pred -------hhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 2456667889999999998776 799999999999999999999987654332111000 000
Q ss_pred -----------------------HhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCccccc----------------
Q 001037 217 -----------------------RRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL---------------- 257 (1179)
Q Consensus 217 -----------------------~~l~~~~~~~~~~~~sL~~~l~~LRkicnhP~L~~~~l~~l---------------- 257 (1179)
.+. ............++-++++|||+|+||.+....++..
T Consensus 612 ~~~~s~~~~~~~~~e~~~~~~~~pR~-~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e 690 (901)
T KOG4439|consen 612 GGYQSRNRFIGGHDEFGNYYNIGPRF-LAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLE 690 (901)
T ss_pred cCccccchhccccccccccccccchh-hhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhh
Confidence 000 0001122344557888999999999995532111000
Q ss_pred ------------------c--------h---hhhhcccCHHHHHHHHHHHH-hhcCCeEEEeehhHHHHHHHHHHHHHcC
Q 001037 258 ------------------S--------K---DFLVKSCGKLWILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWRQ 307 (1179)
Q Consensus 258 ------------------~--------~---~~lv~~SgKl~~L~~IL~el-~~~g~KVLIFSqft~~ldiLe~~L~~~G 307 (1179)
. . ....+.|.|+..+..+|..+ ....+|+||-+||+.++.++...|+..|
T Consensus 691 ~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g 770 (901)
T KOG4439|consen 691 EDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGG 770 (901)
T ss_pred hhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCC
Confidence 0 0 01234678999999999988 5678999999999999999999999999
Q ss_pred CeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEE
Q 001037 308 LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 387 (1179)
Q Consensus 308 i~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~ 387 (1179)
+.|..++|.+...+|+.+++.||...+..+|+|+|..|||.||||..|+|+|++|+.|||+.+.||.+||+|+||+|+|+
T Consensus 771 ~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~ 850 (901)
T KOG4439|consen 771 HIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVF 850 (901)
T ss_pred eeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceE
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeehhhhhhhhhhhhhccCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHhc
Q 001037 388 VIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA 451 (1179)
Q Consensus 388 VyrLvaVEE~I~~~q~ek~~~~~~tv~~~~~l~Gk~~~~gSIEE~Il~~Lq~~K~dla~~Vi~a 451 (1179)
||+|++ .+|||++|.. +|..|++++.-|+.+
T Consensus 851 IhR~~~--------------------------------~gTvEqrV~~-LQdkKldlA~~VL~G 881 (901)
T KOG4439|consen 851 IHRLMC--------------------------------KGTVEQRVKS-LQDKKLDLAKGVLTG 881 (901)
T ss_pred EEEEEe--------------------------------cCcHHHHHHH-HHHHHHHHHhhhccC
Confidence 999987 6999999998 899999999998874
No 14
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=5.8e-49 Score=497.40 Aligned_cols=406 Identities=38% Similarity=0.603 Sum_probs=340.6
Q ss_pred ChhHHHHHHHHcCCCc-EEEEEcChhH----HhHHHhhHhhh---CCCCEEEEcHHHHHh---chhhhccCCccEEEEcC
Q 001037 1 MSMWQSELHKWLPSVS-CIYYVGAKDQ----RSRLFSQEVAA---LKFNVLVTTYEFIMY---DRSKLSKVDWKYIIIDE 69 (1179)
Q Consensus 1 LsQW~~Ef~Kw~P~l~-Vvvy~G~~~~----R~~l~~~~~~~---~~~dVVITTYE~L~~---d~~~L~ki~wdlVIIDE 69 (1179)
+.||.+||.+|.|.++ +..++|.... +..+. ..... ..++|+||||+.+.+ +...|..+.|+++|+||
T Consensus 402 ~~nw~~e~~k~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DE 480 (866)
T COG0553 402 LSNWKREFEKFAPDLRLVLVYHGEKSELDKKREALR-DLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDE 480 (866)
T ss_pred HHHHHHHHhhhCccccceeeeeCCcccccHHHHHHH-HHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhh
Confidence 4799999999999999 9999998753 33221 21111 138999999999999 89999999999999999
Q ss_pred CccCCChhhHHHHHHHhhcCCcEEEEeccCCCCChHHHHHHHh-hhcCCCCC-ChHHHHHHhcCccccCCCCCCCCchhH
Q 001037 70 AQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLN-LLLPEVFD-NRKAFHDWFSQPFQKEGPTHNADDDWL 147 (1179)
Q Consensus 70 AHriKN~~Sk~tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~-fL~P~if~-~~~~F~~~f~~p~~~~~~~~~~e~~~l 147 (1179)
||++||..+..++++..+++.++++|||||++|++.|||++++ |+.|.+++ +...|..||..+.........
T Consensus 481 a~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~------ 554 (866)
T COG0553 481 AHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP------ 554 (866)
T ss_pred HHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc------
Confidence 9999999999999999999999999999999999999999999 99999999 558999999998766543221
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhh--hhcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhh-hcChh
Q 001037 148 ETEKKVIIIHRLHQILEPFMLRRRVED--VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRV-QKNPI 224 (1179)
Q Consensus 148 ~~ee~~~ii~rL~kvL~pf~LRRtKkD--V~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l-~~~~~ 224 (1179)
.+.....+.+|+.++.||++||++.+ +..+||++.+..+.|.|+..|..+|..+..... ......... .....
T Consensus 555 -~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~---~~~~~~~~~~~~~~~ 630 (866)
T COG0553 555 -LEARELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAE---KNQQLLEDLEKADSD 630 (866)
T ss_pred -hhhHHHHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHH---HHHHHHHHHHhhccc
Confidence 22333456669999999999999999 888999999999999999999999998876320 000000000 00000
Q ss_pred hHHH--HHHHHHHHHHHHHHHcCCCCCCCCcccc----------------cchhhhhccc-CHHHHHHHHH-HHHhhcCC
Q 001037 225 YQAK--VYKTLNNRCMELRKTCNHPLLNYPYFSD----------------LSKDFLVKSC-GKLWILDRIL-IKLQRTGH 284 (1179)
Q Consensus 225 ~~~~--~~~sL~~~l~~LRkicnhP~L~~~~l~~----------------l~~~~lv~~S-gKl~~L~~IL-~el~~~g~ 284 (1179)
.... ....+++.++.||++|+||.++...... .....++..| +|+..+.++| ..+...++
T Consensus 631 ~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~ 710 (866)
T COG0553 631 ENRIGDSELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGH 710 (866)
T ss_pred cccccchhhHHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcc
Confidence 0000 2456788899999999999997765111 1122345667 9999999999 89999999
Q ss_pred --eEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecC
Q 001037 285 --RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD 362 (1179)
Q Consensus 285 --KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D 362 (1179)
+||||+||+.++++|+.+|...++.|++++|+++...|..++..|+++ ..+.|||++++|||.||||+.|++||+||
T Consensus 711 ~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d 789 (866)
T COG0553 711 YHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFD 789 (866)
T ss_pred cccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEec
Confidence 999999999999999999999999999999999999999999999974 77899999999999999999999999999
Q ss_pred CCCCcchHHHHhhcccccCCcceEEEEEEEeehhhhhhhhhhhhhccCCccccccccccccccccCHHHHHHHHHHHHHH
Q 001037 363 PDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKI 442 (1179)
Q Consensus 363 ~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~I~~~q~ek~~~~~~tv~~~~~l~Gk~~~~gSIEE~Il~~Lq~~K~ 442 (1179)
++|||+.+.||++|+|||||+++|.||++++ .+||||.|+. ++..|.
T Consensus 790 ~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~--------------------------------~~tiEe~i~~-~~~~K~ 836 (866)
T COG0553 790 PWWNPAVELQAIDRAHRIGQKRPVKVYRLIT--------------------------------RGTIEEKILE-LQEKKQ 836 (866)
T ss_pred cccChHHHHHHHHHHHHhcCcceeEEEEeec--------------------------------CCcHHHHHHH-HHHHHH
Confidence 9999999999999999999999999999987 5999999998 678899
Q ss_pred HHHHHHHhc
Q 001037 443 DMADEVINA 451 (1179)
Q Consensus 443 dla~~Vi~a 451 (1179)
.+...+++.
T Consensus 837 ~l~~~~~~~ 845 (866)
T COG0553 837 ELLDSLIDA 845 (866)
T ss_pred HHHHHHhhh
Confidence 999988886
No 15
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=8.1e-42 Score=397.45 Aligned_cols=420 Identities=32% Similarity=0.455 Sum_probs=310.4
Q ss_pred ChhHHHHHHHHcCC-----------CcEEEEEc---ChhHHhHHHhhHhhhCCCCEEEEcHHHHHhc-------------
Q 001037 1 MSMWQSELHKWLPS-----------VSCIYYVG---AKDQRSRLFSQEVAALKFNVLVTTYEFIMYD------------- 53 (1179)
Q Consensus 1 LsQW~~Ef~Kw~P~-----------l~Vvvy~G---~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d------------- 53 (1179)
|.||-.||..|.|. +.|.+... +-..|.+++.+ +...-.|+++-|++++-.
T Consensus 324 lQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~--Wv~~GGVlLvGYemfRLL~lk~~~~~grpkk 401 (1387)
T KOG1016|consen 324 LQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQ--WVQTGGVLLVGYEMFRLLILKTLPKKGRPKK 401 (1387)
T ss_pred HHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHH--HhccCCEEEehHHHHHHHHHhcccccCCccc
Confidence 47999999999875 33444332 22456555543 345668999999986521
Q ss_pred -------------------------hhhhccCCccEEEEcCCccCCChhhHHHHHHHhhcCCcEEEEeccCCCCChHHHH
Q 001037 54 -------------------------RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELW 108 (1179)
Q Consensus 54 -------------------------~~~L~ki~wdlVIIDEAHriKN~~Sk~tkaL~~Lka~~RLLLTGTPiqN~l~EL~ 108 (1179)
...|.+-..|+||+||+|+|||....++.+|+.|++++|+.|||-|+||++-|+|
T Consensus 402 t~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYw 481 (1387)
T KOG1016|consen 402 TLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYW 481 (1387)
T ss_pred cccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHh
Confidence 2345566799999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCChHHHHHHhcCccccCCCCCCCCchhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCceEEEEE
Q 001037 109 SLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLR 188 (1179)
Q Consensus 109 sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~ee~~~ii~rL~kvL~pf~LRRtKkDV~~~LP~k~e~vV~ 188 (1179)
++++|++|.++++...|.+.|.+|+.++.+......+......+ .+-||.+|..|+-||+..-+...||.+.++++-
T Consensus 482 CMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryR---tHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViL 558 (1387)
T KOG1016|consen 482 CMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYR---THVLHSLLKGFVQRRTHTVLKKILPEKKEYVIL 558 (1387)
T ss_pred hhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHH---HHHHHHHHHHHHHhcchhhHhhhcccccceEEE
Confidence 99999999999999999999999999998888777665544433 466999999999999999888899999999999
Q ss_pred ecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCC----------------
Q 001037 189 CRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP---------------- 252 (1179)
Q Consensus 189 ~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL~~~l~~LRkicnhP~L~~~---------------- 252 (1179)
+.||..|+.+|+.+.-...-.+... ....-++.... .-..++-|||...|.
T Consensus 559 vr~s~iQR~LY~~Fm~d~~r~~~~~---~~~~~NPLkAF----------~vCcKIWNHPDVLY~~l~k~~~a~e~dl~ve 625 (1387)
T KOG1016|consen 559 VRKSQIQRQLYRNFMLDAKREIAAN---NDAVFNPLKAF----------SVCCKIWNHPDVLYRLLEKKKRAEEDDLRVE 625 (1387)
T ss_pred EeHHHHHHHHHHHHHHHHHHhhccc---cccccChHHHH----------HHHHHhcCChHHHHHHHHHhhhhhhhhhhHH
Confidence 9999999999987653211100000 00000111000 011112223221110
Q ss_pred ----------------------------------------------cccccc-----------------hhhhhcccCHH
Q 001037 253 ----------------------------------------------YFSDLS-----------------KDFLVKSCGKL 269 (1179)
Q Consensus 253 ----------------------------------------------~l~~l~-----------------~~~lv~~SgKl 269 (1179)
.+.+.. ...++..+.|+
T Consensus 626 e~~~ag~~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~ 705 (1387)
T KOG1016|consen 626 EMKFAGLQQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKI 705 (1387)
T ss_pred HHhhhcccccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCce
Confidence 000000 01122334566
Q ss_pred HHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHc------------------CCeEEEEcCCCCHHHHHHHHHHhcc
Q 001037 270 WILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR------------------QLVYRRIDGTTSLEDRESAIVDFNS 331 (1179)
Q Consensus 270 ~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~------------------Gi~~~rIdGsts~eeRe~iI~~Fn~ 331 (1179)
..+.+++.+-..-|.|+|||+|....+++|++.|.++ +..|++++|.++..+|+++|++||.
T Consensus 706 V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~ 785 (1387)
T KOG1016|consen 706 VISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNS 785 (1387)
T ss_pred EEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccC
Confidence 6666667666677899999999999999999999864 3568999999999999999999997
Q ss_pred CCCCcc-EEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeehhhhhhhhhhhhhccC
Q 001037 332 HDSDCF-IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSG 410 (1179)
Q Consensus 332 ~ds~i~-VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~I~~~q~ek~~~~~ 410 (1179)
...+. .||+||++|..|+||-.|++||+||..|||....||++|++|+||+|+|+||+|+.
T Consensus 786 -e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVm----------------- 847 (1387)
T KOG1016|consen 786 -EPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVM----------------- 847 (1387)
T ss_pred -CCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehh-----------------
Confidence 45555 79999999999999999999999999999999999999999999999999999976
Q ss_pred CccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhhhc
Q 001037 411 GTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEER 476 (1179)
Q Consensus 411 ~tv~~~~~l~Gk~~~~gSIEE~Il~~Lq~~K~dla~~Vi~ag~Fd~~~~~eEr~~~Le~ll~~e~~ 476 (1179)
-.++|..|+.+ |-.|.-|.+.|++.-.-+...+ ..+++.|+...+.
T Consensus 848 ---------------D~~lEkkIydR-QIsKqGmsdRvVDd~np~an~s----~Ke~enLl~~~ea 893 (1387)
T KOG1016|consen 848 ---------------DNSLEKKIYDR-QISKQGMSDRVVDDANPDANIS----QKELENLLMYDEA 893 (1387)
T ss_pred ---------------hhhhHHHHHHH-HHhhccchhhhhcccCcccccc----HHHHHHHhhhhhc
Confidence 24556666653 3455556666655433222222 2346677665543
No 16
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=3.7e-41 Score=423.21 Aligned_cols=376 Identities=16% Similarity=0.215 Sum_probs=267.4
Q ss_pred ChhHHHHHHHHcCCCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhch---hhhccCCccEEEEcCCccCCC--
Q 001037 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKD-- 75 (1179)
Q Consensus 1 LsQW~~Ef~Kw~P~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~---~~L~ki~wdlVIIDEAHriKN-- 75 (1179)
+.||+.|+.+||. +...++.+..-.... ......+..++++||||+++.++. ..+....|++|||||||+++|
T Consensus 211 ~~QW~~El~~kF~-l~~~i~~~~~~~~~~-~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~ 288 (956)
T PRK04914 211 QHQWLVEMLRRFN-LRFSLFDEERYAEAQ-HDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSE 288 (956)
T ss_pred HHHHHHHHHHHhC-CCeEEEcCcchhhhc-ccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCC
Confidence 3799999998883 556666554322110 011134456899999999999853 456777999999999999995
Q ss_pred -hhhHHHHHHHhh--cCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccc---------cCCCCCCCC
Q 001037 76 -RESVLARDLDRY--RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQ---------KEGPTHNAD 143 (1179)
Q Consensus 76 -~~Sk~tkaL~~L--ka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~---------~~~~~~~~e 143 (1179)
..|+.++.+..+ +++++|+|||||++|++.|+|++|+||+|+.|.++..|....+.+-. .........
T Consensus 289 ~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~ 368 (956)
T PRK04914 289 EAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDA 368 (956)
T ss_pred CCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHH
Confidence 356778888888 67899999999999999999999999999999999999875543211 111100000
Q ss_pred chhH----------------------HHHHHHHHHHHHHH--hhhhhhhhhhhhhhhcCCCCceEEEEEecCCHHHHHHH
Q 001037 144 DDWL----------------------ETEKKVIIIHRLHQ--ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIY 199 (1179)
Q Consensus 144 ~~~l----------------------~~ee~~~ii~rL~k--vL~pf~LRRtKkDV~~~LP~k~e~vV~~~LS~~Qr~lY 199 (1179)
...+ ........+..|.. -...+|+|+++.+|. .+|.+....+.++|.......+
T Consensus 369 ~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~y~~~~ 447 (956)
T PRK04914 369 LNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQYQTAI 447 (956)
T ss_pred HHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHHHHHHH
Confidence 0000 00001112222211 124689999999987 5999999999999977544443
Q ss_pred HH-HHHhccccCCchhHHHhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccchhhhhcccCHHHHHHHHHHH
Q 001037 200 DW-IKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIK 278 (1179)
Q Consensus 200 d~-i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL~~~l~~LRkicnhP~L~~~~l~~l~~~~lv~~SgKl~~L~~IL~e 278 (1179)
.. +... ....+ +.. .+. ..+... ...+..++|+..|.++|..
T Consensus 448 ~~~~~~~---------~~~~l-----~pe----~~~---~~~~~~----------------~~~~~~d~Ki~~L~~~L~~ 490 (956)
T PRK04914 448 KVSLEAR---------ARDML-----YPE----QIY---QEFEDN----------------ATWWNFDPRVEWLIDFLKS 490 (956)
T ss_pred HHhHHHH---------HHhhc-----CHH----HHH---HHHhhh----------------hhccccCHHHHHHHHHHHh
Confidence 21 0000 00000 000 000 000000 0112345799999999987
Q ss_pred HhhcCCeEEEeehhHHHHHHHHHHH-HHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccce
Q 001037 279 LQRTGHRVLLFSTMTKLLDILEEYL-QWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT 357 (1179)
Q Consensus 279 l~~~g~KVLIFSqft~~ldiLe~~L-~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~Adt 357 (1179)
+. ++||||||++..+++.|.+.| ...|++++.|+|+++..+|.++++.|+++++.++| |++|.+||+|||||.|++
T Consensus 491 ~~--~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~V-LIsTdvgseGlNlq~a~~ 567 (956)
T PRK04914 491 HR--SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQV-LLCSEIGSEGRNFQFASH 567 (956)
T ss_pred cC--CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccE-EEechhhccCCCcccccE
Confidence 53 789999999999999999999 56799999999999999999999999975556666 566799999999999999
Q ss_pred eeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeehhhhhhhhhhhhhccCCccccccccccccccccCHHHHHHHHH
Q 001037 358 VIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNI 437 (1179)
Q Consensus 358 VIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~I~~~q~ek~~~~~~tv~~~~~l~Gk~~~~gSIEE~Il~~L 437 (1179)
||+||+||||..++||+||+||+||++.|.||++++ .+|+++.|.. +
T Consensus 568 VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~--------------------------------~~t~~e~i~~-~ 614 (956)
T PRK04914 568 LVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYL--------------------------------EGTAQERLFR-W 614 (956)
T ss_pred EEEecCCCCHHHHHHHhcccccCCCCceEEEEEccC--------------------------------CCCHHHHHHH-H
Confidence 999999999999999999999999999999999865 4778888776 3
Q ss_pred HHHHHHHHHHHHhcc
Q 001037 438 QQYKIDMADEVINAG 452 (1179)
Q Consensus 438 q~~K~dla~~Vi~ag 452 (1179)
-..|+++++.++-.|
T Consensus 615 ~~~~l~ife~~~~~~ 629 (956)
T PRK04914 615 YHEGLNAFEHTCPTG 629 (956)
T ss_pred HhhhcCceeccCCCH
Confidence 355666666555443
No 17
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=3.1e-39 Score=365.52 Aligned_cols=361 Identities=24% Similarity=0.290 Sum_probs=276.5
Q ss_pred hhHHHHHHHHcCCCcE-EEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchhhhccCCccEEEEcCCccCCChhhHH
Q 001037 2 SMWQSELHKWLPSVSC-IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVL 80 (1179)
Q Consensus 2 sQW~~Ef~Kw~P~l~V-vvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriKN~~Sk~ 80 (1179)
..|.+++.+|+|.... .+..+..+.-..+. ...-|.|+||+.+......|..-.|.+||+||+|++|+..+++
T Consensus 254 ftWa~al~r~lps~~pi~vv~~~~D~~~~~~------t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr 327 (689)
T KOG1000|consen 254 FTWAKALNRFLPSIHPIFVVDKSSDPLPDVC------TSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKR 327 (689)
T ss_pred HHHHHHHHHhcccccceEEEecccCCccccc------cCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhh
Confidence 3699999999998654 33333322211110 1246999999999999888988889999999999999999999
Q ss_pred HHHHHhh--cCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCCCCchhHHHHHHHHHHHH
Q 001037 81 ARDLDRY--RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHR 158 (1179)
Q Consensus 81 tkaL~~L--ka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~ee~~~ii~r 158 (1179)
++++..+ .+.|.|||||||.-.++.|||.++..+++.+|.+..+|...||..-........... .++.+
T Consensus 328 ~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~---------tnl~E 398 (689)
T KOG1000|consen 328 TKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGC---------TNLEE 398 (689)
T ss_pred hhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCC---------CCHHH
Confidence 9999877 689999999999999999999999999999999999999999865433221111111 12345
Q ss_pred HHHhhh-hhhhhhhhhhhhcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHHHHHH
Q 001037 159 LHQILE-PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 237 (1179)
Q Consensus 159 L~kvL~-pf~LRRtKkDV~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL~~~l 237 (1179)
|+.+|. .+|+||+|.+|+.+||+|...++.+ ...-+-+..+.+.......... ... -..-...+
T Consensus 399 L~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~-~~gr~da~~~~lv~~a~~~t~~----~~~----------e~~~~~l~ 463 (689)
T KOG1000|consen 399 LAALLFKRLMIRRLKADVLKQLPPKRREVVYV-SGGRIDARMDDLVKAAADYTKV----NSM----------ERKHESLL 463 (689)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccceEEEEE-cCCccchHHHHHHHHhhhcchh----hhh----------hhhhHHHH
Confidence 677664 4799999999999999995554443 3333333333332221110000 000 00001111
Q ss_pred HHHHHHcCCCCCCCCcccccchhhhhcccCHHHHHHHHHHH----HhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEE
Q 001037 238 MELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIK----LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRI 313 (1179)
Q Consensus 238 ~~LRkicnhP~L~~~~l~~l~~~~lv~~SgKl~~L~~IL~e----l~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rI 313 (1179)
+..++ ..-.|+..+.+.|.. .-+.+.|+|||+++..+++.|+..+..+++.+++|
T Consensus 464 l~y~~---------------------tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRI 522 (689)
T KOG1000|consen 464 LFYSL---------------------TGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRI 522 (689)
T ss_pred HHHHH---------------------hcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEe
Confidence 11111 122477777777766 34567999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 314 DGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 314 dGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
||+|+..+|+.+++.|+. +.+++|-|+|..|+|.||+|+.|+.|||.+++|||....||.+|+||+||+..|.||||++
T Consensus 523 DGst~s~~R~ll~qsFQ~-seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvA 601 (689)
T KOG1000|consen 523 DGSTPSHRRTLLCQSFQT-SEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVA 601 (689)
T ss_pred cCCCCchhHHHHHHHhcc-ccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEe
Confidence 999999999999999996 8899999999999999999999999999999999999999999999999999999999998
Q ss_pred ehhhhhhhhhhhhhccCCccccccccccccccccCHHHHHHHHHHHHHHHHHHH
Q 001037 394 VVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADE 447 (1179)
Q Consensus 394 VEE~I~~~q~ek~~~~~~tv~~~~~l~Gk~~~~gSIEE~Il~~Lq~~K~dla~~ 447 (1179)
++|+++.++..++ .|++....
T Consensus 602 --------------------------------KgT~Ddy~Wp~l~-~KL~vl~s 622 (689)
T KOG1000|consen 602 --------------------------------KGTADDYMWPMLQ-QKLDVLGS 622 (689)
T ss_pred --------------------------------cCchHHHHHHHHH-HHHHHHhh
Confidence 6999999999774 56665544
No 18
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.8e-39 Score=395.53 Aligned_cols=384 Identities=29% Similarity=0.434 Sum_probs=312.4
Q ss_pred ChhHHHHHHHHcC--CCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchhhhccCCccEEEEcCCccCCChhh
Q 001037 1 MSMWQSELHKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES 78 (1179)
Q Consensus 1 LsQW~~Ef~Kw~P--~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriKN~~S 78 (1179)
+.||..|+.+... .+.+.+|+| |.+. ......++||||||.++.. ..|..+.|.+||+||||.++|.++
T Consensus 201 ~~qW~~elek~~~~~~l~v~v~~g----r~kd---~~el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~t 271 (674)
T KOG1001|consen 201 LTQWKTELEKVTEEDKLSIYVYHG----RTKD---KSELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDT 271 (674)
T ss_pred HHHHHHHHhccCCccceEEEEecc----cccc---cchhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcch
Confidence 4699999966663 578888888 2211 1234578999999999987 667789999999999999999999
Q ss_pred HHHHHHHhhcCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCCCCchhHHHHHHHHHHHH
Q 001037 79 VLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHR 158 (1179)
Q Consensus 79 k~tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~ee~~~ii~r 158 (1179)
+.++++..+.+.+||.|||||+||++.|||+++.|+.-.++.....|...+..++..... .....+
T Consensus 272 q~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~--------------~~~~k~ 337 (674)
T KOG1001|consen 272 QIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY--------------KEGVKT 337 (674)
T ss_pred HhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH--------------HHHHHH
Confidence 999999999999999999999999999999999999999999999999888877654321 234667
Q ss_pred HHHhhhhhhhhhhhhhh-----hcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHH
Q 001037 159 LHQILEPFMLRRRVEDV-----EGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTL 233 (1179)
Q Consensus 159 L~kvL~pf~LRRtKkDV-----~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL 233 (1179)
+..+|..+++||+|..- ...||++...++.+.++..++..|..+............. .......|..+
T Consensus 338 l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~-------~~~~~~~Y~~~ 410 (674)
T KOG1001|consen 338 LQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYAN-------EGTVSSTYAFF 410 (674)
T ss_pred HHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhh-------hchhhhhHHHH
Confidence 88899999999988632 2369999999999999999999999887764433222111 11222356777
Q ss_pred HHHHHHHHHHcCCCCCCCCcccc-----------------c-----------ch--------------------------
Q 001037 234 NNRCMELRKTCNHPLLNYPYFSD-----------------L-----------SK-------------------------- 259 (1179)
Q Consensus 234 ~~~l~~LRkicnhP~L~~~~l~~-----------------l-----------~~-------------------------- 259 (1179)
...+.+||++|+||.++...... + ..
T Consensus 411 l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~ 490 (674)
T KOG1001|consen 411 LKNLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENA 490 (674)
T ss_pred HHHHHHHHHHccchHhhhhhhhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCC
Confidence 88889999999999774321100 0 00
Q ss_pred -----------hhhhc-------------ccCHHHHHHHHHHHHhhcCC-eEEEeehhHHHHHHHHHHHHHcCCeEEEEc
Q 001037 260 -----------DFLVK-------------SCGKLWILDRILIKLQRTGH-RVLLFSTMTKLLDILEEYLQWRQLVYRRID 314 (1179)
Q Consensus 260 -----------~~lv~-------------~SgKl~~L~~IL~el~~~g~-KVLIFSqft~~ldiLe~~L~~~Gi~~~rId 314 (1179)
..++. .+.|+..+..+|........ ++|||+|++..+++++..|...++.+.+++
T Consensus 491 ~~~~cr~~l~~~~l~s~~~~~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~ 570 (674)
T KOG1001|consen 491 PCPLCRNVLKEKKLLSANPLPSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYD 570 (674)
T ss_pred CCcHHHHHHHHHHHhhcccccchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhh
Confidence 00001 14466666666664444444 999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEee
Q 001037 315 GTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAV 394 (1179)
Q Consensus 315 Gsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaV 394 (1179)
|.++...|.+.+..|. .++.+.|+|+|.+||+.||||+.|++||++||+|||..++|||+||||+||+++|.|++++.
T Consensus 571 g~~~~~~r~~s~~~~~-~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i- 648 (674)
T KOG1001|consen 571 GEMLMKIRTKSFTDFP-CDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFII- 648 (674)
T ss_pred hhhHHHHHHhhhcccc-cCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehh-
Confidence 9999999999999999 58899999999999999999999999999999999999999999999999999999999965
Q ss_pred hhhhhhhhhhhhhccCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHH
Q 001037 395 VDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEV 448 (1179)
Q Consensus 395 EE~I~~~q~ek~~~~~~tv~~~~~l~Gk~~~~gSIEE~Il~~Lq~~K~dla~~V 448 (1179)
++++|++|++ |+++|..+....
T Consensus 649 -------------------------------~dtveer~l~-iq~~K~~~~~~a 670 (674)
T KOG1001|consen 649 -------------------------------KDTVEERILK-IQEKKREYNASA 670 (674)
T ss_pred -------------------------------hhccHHHHHH-HHHHHHHHHhhh
Confidence 5899999998 888888887643
No 19
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=9.8e-36 Score=358.69 Aligned_cols=316 Identities=40% Similarity=0.598 Sum_probs=274.6
Q ss_pred ChhHHHHHHHHcCCCcEEEEEcChhHHhHHHhhH-------------------hhhCCCCEEEEcHHHHHhchhhhccCC
Q 001037 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE-------------------VAALKFNVLVTTYEFIMYDRSKLSKVD 61 (1179)
Q Consensus 1 LsQW~~Ef~Kw~P~l~Vvvy~G~~~~R~~l~~~~-------------------~~~~~~dVVITTYE~L~~d~~~L~ki~ 61 (1179)
+.||..|+..|+|...++.|.|+...|.-+.... .....++|.+++|+++..+...+..+.
T Consensus 357 ~~nwe~e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~ 436 (696)
T KOG0383|consen 357 IVNWEREFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQ 436 (696)
T ss_pred ccCCCCchhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhh
Confidence 4589999999999999999999987765432111 133468999999999999999999999
Q ss_pred ccEEEEcCCccCCChhhHHHHHHHhhcCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCC
Q 001037 62 WKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHN 141 (1179)
Q Consensus 62 wdlVIIDEAHriKN~~Sk~tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~ 141 (1179)
|.++|+||+|+++|..|++.+.+..+...++++|||||++|++.+|+++|+||.|..|++...|.+.|...+
T Consensus 437 w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~~-------- 508 (696)
T KOG0383|consen 437 WGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDIS-------- 508 (696)
T ss_pred cceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchhh--------
Confidence 999999999999999999999999999999999999999999999999999999999999888877664321
Q ss_pred CCchhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhc
Q 001037 142 ADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK 221 (1179)
Q Consensus 142 ~e~~~l~~ee~~~ii~rL~kvL~pf~LRRtKkDV~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~ 221 (1179)
....+..||.++.|+|+||.|.||+..+|.|++..+.+.|++.|+.+|..+.......+..
T Consensus 509 ----------~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~--------- 569 (696)
T KOG0383|consen 509 ----------CEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA--------- 569 (696)
T ss_pred ----------HHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh---------
Confidence 1235778999999999999999999999999999999999999999999887643211110
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCccc-----ccchhhhhcccCHHHHHHHHHHHHhhcCCeEEEeehhHHHH
Q 001037 222 NPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS-----DLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLL 296 (1179)
Q Consensus 222 ~~~~~~~~~~sL~~~l~~LRkicnhP~L~~~~l~-----~l~~~~lv~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~l 296 (1179)
....-.+.+++|+|+|+|+|||++..... ......++..++|+..|..+++++...||||+||+||+.++
T Consensus 570 -----~~~~~s~~n~~mel~K~~~hpy~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~l 644 (696)
T KOG0383|consen 570 -----GVHQYSLLNIVMELRKQCNHPYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHML 644 (696)
T ss_pred -----cchhHHHHHHHHHHHHhhcCcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 11234678999999999999999765211 12234577889999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccC
Q 001037 297 DILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRG 349 (1179)
Q Consensus 297 diLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeG 349 (1179)
|+|+++|...+ .|.+++|..+..+|+.+|.+||.+++.-++||+||+|||.|
T Consensus 645 dlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 645 DLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99999999999 99999999999999999999999999999999999999987
No 20
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=2.4e-26 Score=281.88 Aligned_cols=276 Identities=17% Similarity=0.287 Sum_probs=197.4
Q ss_pred ChhHHHHHHHHc--CCCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhc----------hhhhccCCccEEEEc
Q 001037 1 MSMWQSELHKWL--PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----------RSKLSKVDWKYIIID 68 (1179)
Q Consensus 1 LsQW~~Ef~Kw~--P~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d----------~~~L~ki~wdlVIID 68 (1179)
|.||.+||.+|+ +...+..|.|....+ .....+|+||||+++... ...|....|++||+|
T Consensus 311 v~QW~~ef~~~~~l~~~~I~~~tg~~k~~--------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~D 382 (732)
T TIGR00603 311 VEQWKQQFKMWSTIDDSQICRFTSDAKER--------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLD 382 (732)
T ss_pred HHHHHHHHHHhcCCCCceEEEEecCcccc--------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEE
Confidence 469999999997 345677777763221 123478999999998653 234555689999999
Q ss_pred CCccCCChhhHHHHHHHhhcCCcEEEEeccCCCCChHHHHHHHhh-hcCCCCCChHHHHHHhcCccccCCCCCCCCchhH
Q 001037 69 EAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNL-LLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWL 147 (1179)
Q Consensus 69 EAHriKN~~Sk~tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~f-L~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l 147 (1179)
|||++.+ ....+.+..+.+.+||+|||||+.++- .+..+.+ +.|.++.- .|.
T Consensus 383 EvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD~--~~~~L~~LiGP~vye~-----------------------~~~ 435 (732)
T TIGR00603 383 EVHVVPA--AMFRRVLTIVQAHCKLGLTATLVREDD--KITDLNFLIGPKLYEA-----------------------NWM 435 (732)
T ss_pred ccccccH--HHHHHHHHhcCcCcEEEEeecCcccCC--chhhhhhhcCCeeeec-----------------------CHH
Confidence 9999953 445556777899999999999998762 3333433 34433211 000
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHH
Q 001037 148 ETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQA 227 (1179)
Q Consensus 148 ~~ee~~~ii~rL~kvL~pf~LRRtKkDV~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~ 227 (1179)
.++. ...|.+.....++|+|++.....|-.... .
T Consensus 436 -------------eLi~-----------~G~LA~~~~~ev~v~~t~~~~~~yl~~~~---------~------------- 469 (732)
T TIGR00603 436 -------------ELQK-----------KGFIANVQCAEVWCPMTPEFYREYLRENS---------R------------- 469 (732)
T ss_pred -------------HHHh-----------CCccccceEEEEEecCCHHHHHHHHHhcc---------h-------------
Confidence 0000 12366677788999999875444421100 0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCcccccchhhhhcccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcC
Q 001037 228 KVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ 307 (1179)
Q Consensus 228 ~~~~sL~~~l~~LRkicnhP~L~~~~l~~l~~~~lv~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~G 307 (1179)
... .| .+ ....|+.++..++......++|+||||.++..+..+...| +
T Consensus 470 --~k~------~l--~~-------------------~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~ 517 (732)
T TIGR00603 470 --KRM------LL--YV-------------------MNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---G 517 (732)
T ss_pred --hhh------HH--hh-------------------hChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---C
Confidence 000 00 00 1125888998888876678999999999999888887777 3
Q ss_pred CeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCC-CcchHHHHhhcccccCCcce-
Q 001037 308 LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKRE- 385 (1179)
Q Consensus 308 i~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pW-NP~~~eQAiGRIhRIGQkke- 385 (1179)
...|+|.|+..+|.+++++|+. ++.+.+|++ +++|++||||+.|++||++++++ |+..+.||+||+.|.+..+.
T Consensus 518 --~~~I~G~ts~~ER~~il~~Fr~-~~~i~vLv~-SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~ 593 (732)
T TIGR00603 518 --KPFIYGPTSQQERMQILQNFQH-NPKVNTIFL-SKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDA 593 (732)
T ss_pred --CceEECCCCHHHHHHHHHHHHh-CCCccEEEE-ecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCcc
Confidence 3458999999999999999985 445666555 59999999999999999999987 99999999999999987654
Q ss_pred ----EEEEEEEe
Q 001037 386 ----VKVIYMEA 393 (1179)
Q Consensus 386 ----V~VyrLva 393 (1179)
.++|.|++
T Consensus 594 ~~~~A~fY~lVs 605 (732)
T TIGR00603 594 EEYNAFFYSLVS 605 (732)
T ss_pred ccccceEEEEec
Confidence 67788876
No 21
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.95 E-value=2.4e-27 Score=263.99 Aligned_cols=222 Identities=36% Similarity=0.693 Sum_probs=181.1
Q ss_pred ChhHHHHHHHHc-C-CCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHH-----hchhhhccCCccEEEEcCCccC
Q 001037 1 MSMWQSELHKWL-P-SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM-----YDRSKLSKVDWKYIIIDEAQRM 73 (1179)
Q Consensus 1 LsQW~~Ef~Kw~-P-~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~-----~d~~~L~ki~wdlVIIDEAHri 73 (1179)
+.||..||.+|+ | .+++++|.|....+.. .......++|+||||+++. .....|..++|++|||||+|++
T Consensus 70 ~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~ 146 (299)
T PF00176_consen 70 LSQWKEEIEKWFDPDSLRVIIYDGDSERRRL---SKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRL 146 (299)
T ss_dssp HHHHHHHHHHHSGT-TS-EEEESSSCHHHHT---TSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGG
T ss_pred hhhhhhhhccccccccccccccccccccccc---cccccccceeeeccccccccccccccccccccccceeEEEeccccc
Confidence 469999999999 4 6899999988622222 1234568999999999999 6677888899999999999999
Q ss_pred CChhhHHHHHHHhhcCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCCCCchhHHHHHHH
Q 001037 74 KDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKV 153 (1179)
Q Consensus 74 KN~~Sk~tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~ee~~ 153 (1179)
||..+++++++..+.+.++|+|||||++|++.|||++++||.|..+.+...|.++|..+ ......
T Consensus 147 k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~---------------~~~~~~ 211 (299)
T PF00176_consen 147 KNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP---------------DKENSY 211 (299)
T ss_dssp TTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH---------------HHTHHH
T ss_pred ccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh---------------cccccc
Confidence 99999999999999999999999999999999999999999999999999999988654 122334
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHH
Q 001037 154 IIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTL 233 (1179)
Q Consensus 154 ~ii~rL~kvL~pf~LRRtKkDV~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL 233 (1179)
....+|..++.++++||+++++...||+..+.++.|+|++.|+.+|+.+.......+.... .........+
T Consensus 212 ~~~~~L~~~l~~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~---------~~~~~~~~~~ 282 (299)
T PF00176_consen 212 ENIERLRELLSEFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSS---------RKKSKKLSSL 282 (299)
T ss_dssp HHHHHHHHHHCCCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T-----------TCHHHHHH
T ss_pred ccccccccccchhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhc---------ccchhhHHHH
Confidence 4577899999999999999999888999999999999999999999988776554433221 1122356788
Q ss_pred HHHHHHHHHHcCCCCC
Q 001037 234 NNRCMELRKTCNHPLL 249 (1179)
Q Consensus 234 ~~~l~~LRkicnhP~L 249 (1179)
+..+.+||++|+||++
T Consensus 283 ~~~~~~lr~~c~hp~l 298 (299)
T PF00176_consen 283 LQILKRLRQVCNHPYL 298 (299)
T ss_dssp HHHHHHHHHHHH-THH
T ss_pred HHHHHHHHHHhCCccc
Confidence 8999999999999976
No 22
>PRK13766 Hef nuclease; Provisional
Probab=99.93 E-value=2e-24 Score=272.80 Aligned_cols=367 Identities=18% Similarity=0.161 Sum_probs=214.4
Q ss_pred hhHHHHHHHHcCC--CcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhch--hhhccCCccEEEEcCCccCCChh
Q 001037 2 SMWQSELHKWLPS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE 77 (1179)
Q Consensus 2 sQW~~Ef~Kw~P~--l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~--~~L~ki~wdlVIIDEAHriKN~~ 77 (1179)
.||..+|.+++.. ..++.+.|......+ ...+...+|+|+|++.+.++. ..+....|++|||||||++.+..
T Consensus 72 ~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r----~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~ 147 (773)
T PRK13766 72 EQHAEFFRKFLNIPEEKIVVFTGEVSPEKR----AELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNY 147 (773)
T ss_pred HHHHHHHHHHhCCCCceEEEEeCCCCHHHH----HHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccc
Confidence 6899999998743 478888886433221 112346799999999998763 23334479999999999997644
Q ss_pred hHHHHHHHhh---cCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChH----HHHHHhcCccccCCCCCCCCchhHHHH
Q 001037 78 SVLARDLDRY---RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRK----AFHDWFSQPFQKEGPTHNADDDWLETE 150 (1179)
Q Consensus 78 Sk~tkaL~~L---ka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~----~F~~~f~~p~~~~~~~~~~e~~~l~~e 150 (1179)
+..+.+-..+ +..++++|||||..+ ...+..+++.|....+.-+. .+...+..+... .....+.
T Consensus 148 ~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~------~~~v~l~-- 218 (773)
T PRK13766 148 AYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIE------WVRVELP-- 218 (773)
T ss_pred cHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeE------EEEeCCc--
Confidence 4332221111 456699999999876 56666666666433221111 122211110000 0000000
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhcC-CCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhh---c-Ch--
Q 001037 151 KKVIIIHRLHQILEPFMLRRRVEDVEGS-LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQ---K-NP-- 223 (1179)
Q Consensus 151 e~~~ii~rL~kvL~pf~LRRtKkDV~~~-LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~---~-~~-- 223 (1179)
..+..++..|..++.++.+...... +++.........+...+..++..+...... ......... . ..
T Consensus 219 ---~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~l~~~~ 292 (773)
T PRK13766 219 ---EELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSE---GYEAISILAEAMKLRHAV 292 (773)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchH---HHHHHHHHHHHHHHHHHH
Confidence 1134566677777666655433211 222211122222333333444333221000 000000000 0 00
Q ss_pred -hhHHHHHHHHHHHHHHHHHHcCCCCCC--------CCccccc--chhhhhcccCHHHHHHHHHHHHh--hcCCeEEEee
Q 001037 224 -IYQAKVYKTLNNRCMELRKTCNHPLLN--------YPYFSDL--SKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFS 290 (1179)
Q Consensus 224 -~~~~~~~~sL~~~l~~LRkicnhP~L~--------~~~l~~l--~~~~lv~~SgKl~~L~~IL~el~--~~g~KVLIFS 290 (1179)
.........+...+..++..+..+... ....... .........+|+..|.++|.++. ..+.|+||||
T Consensus 293 ~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~ 372 (773)
T PRK13766 293 ELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFT 372 (773)
T ss_pred HHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 000000111222222233222111000 0000000 00111234689999999999887 5789999999
Q ss_pred hhHHHHHHHHHHHHHcCCeEEEEcCC--------CCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecC
Q 001037 291 TMTKLLDILEEYLQWRQLVYRRIDGT--------TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD 362 (1179)
Q Consensus 291 qft~~ldiLe~~L~~~Gi~~~rIdGs--------ts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D 362 (1179)
++..+++.|.++|...|+.+..++|. ++..+|..++.+|+++ .+. +|++|.++++|+|++.|++||+||
T Consensus 373 ~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g--~~~-vLvaT~~~~eGldi~~~~~VI~yd 449 (773)
T PRK13766 373 QYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAG--EFN-VLVSTSVAEEGLDIPSVDLVIFYE 449 (773)
T ss_pred CcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcC--CCC-EEEECChhhcCCCcccCCEEEEeC
Confidence 99999999999999999999999986 8889999999999964 455 477889999999999999999999
Q ss_pred CCCCcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 363 PDPNPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 363 ~pWNP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
++||+.+++||.||++|.|+ ..||.|++
T Consensus 450 ~~~s~~r~iQR~GR~gR~~~---~~v~~l~~ 477 (773)
T PRK13766 450 PVPSEIRSIQRKGRTGRQEE---GRVVVLIA 477 (773)
T ss_pred CCCCHHHHHHHhcccCcCCC---CEEEEEEe
Confidence 99999999999999999876 45677755
No 23
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.92 E-value=6.6e-25 Score=270.80 Aligned_cols=228 Identities=25% Similarity=0.448 Sum_probs=169.6
Q ss_pred ChhHHHHHHHHcCCC-cEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhc----------------------hhhh
Q 001037 1 MSMWQSELHKWLPSV-SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----------------------RSKL 57 (1179)
Q Consensus 1 LsQW~~Ef~Kw~P~l-~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d----------------------~~~L 57 (1179)
+.||-.||.+|++++ +|..|-|-. +...........||||||||+.++.+ ..+|
T Consensus 432 l~QW~~EI~kH~~~~lKv~~Y~Gir---k~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL 508 (1394)
T KOG0298|consen 432 LMQWFEEIHKHISSLLKVLLYFGIR---KTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPL 508 (1394)
T ss_pred HHHHHHHHHHhccccceEEEEechh---hhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCch
Confidence 469999999999876 999999963 22333335567899999999999875 2346
Q ss_pred ccCCccEEEEcCCccCCChhhHHHHHHHhhcCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCC
Q 001037 58 SKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEG 137 (1179)
Q Consensus 58 ~ki~wdlVIIDEAHriKN~~Sk~tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~ 137 (1179)
..+.|.+||+|||+.+....|..++.+..|.+.++|++||||+++ +.+|+.||+||...+|.....|.+.+..++...
T Consensus 509 ~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r- 586 (1394)
T KOG0298|consen 509 LMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR- 586 (1394)
T ss_pred HHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH-
Confidence 677899999999999999999999999999999999999999999 999999999999999999888887665443221
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc--CCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhH
Q 001037 138 PTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG--SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 215 (1179)
Q Consensus 138 ~~~~~e~~~l~~ee~~~ii~rL~kvL~pf~LRRtKkDV~~--~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~ 215 (1179)
.....++.++...+-|+.+-+|.. .+|+-.+.+.+..+++.+..+|................
T Consensus 587 ----------------a~~~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~ 650 (1394)
T KOG0298|consen 587 ----------------AKCEPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVE 650 (1394)
T ss_pred ----------------hhhhhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHH
Confidence 223457788888888998888776 58888888888888888877776432221111000000
Q ss_pred HHh------hhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 001037 216 KRR------VQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 249 (1179)
Q Consensus 216 ~~~------l~~~~~~~~~~~~sL~~~l~~LRkicnhP~L 249 (1179)
... ..............+...+.+||++|+||..
T Consensus 651 ~~k~~~l~~~sd~~~l~~~~~a~i~~~l~rLRq~Cchplv 690 (1394)
T KOG0298|consen 651 KLKRHNLDNSSDLASLSPQLLAIILKWLLRLRQACCHPLV 690 (1394)
T ss_pred HHHHhccccccccccCChhhHHHHHHHHHHHHHhhccccc
Confidence 000 0111222333456788888999999999843
No 24
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.90 E-value=1.2e-23 Score=205.58 Aligned_cols=109 Identities=20% Similarity=0.345 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhh
Q 001037 878 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 957 (1179)
Q Consensus 878 ~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~ 957 (1179)
..+.|+.|+++|++++|++||+|+..|+++|+|.++||||++ |++||||.+|++||++.+|.++.+|..||.||+.||+
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~i-I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 81 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEV-VSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAK 81 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHH-hCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHhhhcCC
Q 001037 958 QFYGFSHEVRSEARKVHDLFFDLLKIAFPD 987 (1179)
Q Consensus 958 ~y~~~~se~~~~A~~l~~~f~~~~~~~~~~ 987 (1179)
.||+++|.+|++|..|+++|...++.+.++
T Consensus 82 ~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~ 111 (113)
T cd05524 82 AYYKPDSPEHKDACKLWELFLSARNEVLSG 111 (113)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999887664
No 25
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=1.8e-23 Score=201.95 Aligned_cols=103 Identities=13% Similarity=0.253 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhh
Q 001037 877 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 956 (1179)
Q Consensus 877 ~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na 956 (1179)
.++..|++++++|..++|++||++|..|+++|+|.++||||.+ |.+||||.+|++||++++|.++.+|..||+|||.||
T Consensus 2 ~l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~-I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 2 RLAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYER-ITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred hHHHHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhh-CCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred hhhcCCChHHHHHHHHHHHHHHHH
Q 001037 957 MQFYGFSHEVRSEARKVHDLFFDL 980 (1179)
Q Consensus 957 ~~y~~~~se~~~~A~~l~~~f~~~ 980 (1179)
+.||+++|++|++|+.|+++|.+.
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999874
No 26
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=3.6e-23 Score=199.78 Aligned_cols=104 Identities=14% Similarity=0.315 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhh
Q 001037 878 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 957 (1179)
Q Consensus 878 ~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~ 957 (1179)
|+.+|++||+.|.+++|++||.++..|+++|++.++||||.+ |++||||.+|.+||++++|.++.+|..||.||+.||+
T Consensus 1 ~~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 1 MQQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDV-IKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred ChHHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHH-cCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHh
Q 001037 958 QFYGFSHEVRSEARKVHDLFFDLLK 982 (1179)
Q Consensus 958 ~y~~~~se~~~~A~~l~~~f~~~~~ 982 (1179)
.||+++|.+|++|..|+++|.++.+
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999988753
No 27
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=4.9e-23 Score=198.15 Aligned_cols=100 Identities=19% Similarity=0.330 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhh
Q 001037 879 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 958 (1179)
Q Consensus 879 ~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~ 958 (1179)
|..|.++++.|.+++|++||+||..|+++|+|.++||||++ |.+||||.+|++||++.+|.++.+|..||.||++||+.
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~v-I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 80 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAV-IKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKT 80 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHH-cCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHHH
Q 001037 959 FYGFSHEVRSEARKVHDLFFD 979 (1179)
Q Consensus 959 y~~~~se~~~~A~~l~~~f~~ 979 (1179)
||+++|.+|++|+.|+++|.+
T Consensus 81 yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 81 FNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999975
No 28
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.1e-22 Score=196.96 Aligned_cols=105 Identities=16% Similarity=0.289 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhh
Q 001037 878 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 957 (1179)
Q Consensus 878 ~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~ 957 (1179)
.+++|+.|++.|.+++|++||.++..|+.+|.+.++||||.+ |.+||||.+|++||++++|.++.+|..||+||+.||+
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~i-I~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 80 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYEL-IRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQ 80 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHH-cCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHhh
Q 001037 958 QFYGFSHEVRSEARKVHDLFFDLLKI 983 (1179)
Q Consensus 958 ~y~~~~se~~~~A~~l~~~f~~~~~~ 983 (1179)
.||+++|.+|++|..|+++|.+.+++
T Consensus 81 ~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 81 TFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999876
No 29
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1.1e-22 Score=195.78 Aligned_cols=101 Identities=16% Similarity=0.248 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhh
Q 001037 879 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 958 (1179)
Q Consensus 879 ~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~ 958 (1179)
|++|+++|+.|.+++|.+||.++..|+.+|++.++||||++ |.+||||.+|++||++++|.++.+|..||.||+.||+.
T Consensus 2 ~~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~~pdYy~i-Ik~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 2 KKRMLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKI-ILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred hHHHHHHHHHHHHhhccCCCcccHHHhcCCCcccCccHHHH-cCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHH
Q 001037 959 FYGFSHEVRSEARKVHDLFFDL 980 (1179)
Q Consensus 959 y~~~~se~~~~A~~l~~~f~~~ 980 (1179)
||+++|++|.+|+.|+++|.++
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999764
No 30
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=5.2e-22 Score=191.81 Aligned_cols=102 Identities=19% Similarity=0.233 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhh
Q 001037 878 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 957 (1179)
Q Consensus 878 ~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~ 957 (1179)
++++|+++|+.|.+.+|++||.+++.|+.+|+|.++||||++ |++||||.+|.+||++ |.++.+|..||.||++||+
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~i-I~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~ 78 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKI-IKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNAR 78 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHH-hcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999 9999999999999998 9999999999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHh
Q 001037 958 QFYGFSHEVRSEARKVHDLFFDLLK 982 (1179)
Q Consensus 958 ~y~~~~se~~~~A~~l~~~f~~~~~ 982 (1179)
.||+++|.+|++|..|+++|.+.|.
T Consensus 79 ~yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 79 LYNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998875
No 31
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.86 E-value=1.1e-21 Score=188.95 Aligned_cols=102 Identities=14% Similarity=0.208 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhh
Q 001037 878 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 957 (1179)
Q Consensus 878 ~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~ 957 (1179)
.|+.|+.||+.|.+++|.+||.++..|+++|++.++||||.+ |++||||.+|++||++++|.++.+|..||+||+.||+
T Consensus 1 ~~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~i-Ik~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVI-IKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANAR 79 (103)
T ss_pred CHHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHH-cCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHHHHH
Q 001037 958 QFYGFSHEVRSEARKVHDLFFDL 980 (1179)
Q Consensus 958 ~y~~~~se~~~~A~~l~~~f~~~ 980 (1179)
.||+++|.+|.+|..|++.|...
T Consensus 80 ~yn~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05519 80 TYNQEGSIVYEDAVEMEKAFKKK 102 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999763
No 32
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.84 E-value=3.2e-21 Score=185.58 Aligned_cols=98 Identities=16% Similarity=0.263 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhhhcC
Q 001037 882 CKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYG 961 (1179)
Q Consensus 882 c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~y~~ 961 (1179)
--.||+.|++++|++||+++..|+++|.+.++||||++ |.+||||.+|.+||++++|.++.+|..||.||+.||+.||+
T Consensus 5 ~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~~PdYy~i-I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~ 83 (103)
T cd05520 5 LWQLYDTIRNARNNQGQLLAEPFLKLPSKRKYPDYYQE-IKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNV 83 (103)
T ss_pred HHHHHHHHHhhcCCCCCCccHhhhcCCCcccCCCHHHH-cCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35689999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 001037 962 FSHEVRSEARKVHDLFFDL 980 (1179)
Q Consensus 962 ~~se~~~~A~~l~~~f~~~ 980 (1179)
++|.+|++|..|+++|..+
T Consensus 84 ~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 84 PNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999764
No 33
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.84 E-value=2.2e-19 Score=216.87 Aligned_cols=125 Identities=16% Similarity=0.148 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhh
Q 001037 267 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 346 (1179)
Q Consensus 267 gKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AG 346 (1179)
.+...+..++..+...+.++|||+..+..++.|.+.|...|+++..++|+++.++|..+++.|++ +...|||++++.+
T Consensus 328 ~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~--~~~~vLvaT~~~l 405 (501)
T PHA02558 328 KRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEG--GKGIIIVASYGVF 405 (501)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhC--CCCeEEEEEccee
Confidence 35556666666666778899999999999999999999999999999999999999999999984 4556767777999
Q ss_pred ccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcce-EEEEEEEe
Q 001037 347 GRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE-VKVIYMEA 393 (1179)
Q Consensus 347 geGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkke-V~VyrLva 393 (1179)
++|+|++.+++||+++|+.+...+.|++||++|.+..|+ +.||.++.
T Consensus 406 ~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD 453 (501)
T PHA02558 406 STGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIID 453 (501)
T ss_pred ccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeec
Confidence 999999999999999999999999999999999987664 78888753
No 34
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.83 E-value=6.9e-19 Score=203.53 Aligned_cols=123 Identities=24% Similarity=0.356 Sum_probs=108.1
Q ss_pred ccCHHHHHHHHHHHHh--hcCCeEEEeehhHHHHHHHHHHHHHcCCeEE-EEcC--------CCCHHHHHHHHHHhccCC
Q 001037 265 SCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQLVYR-RIDG--------TTSLEDRESAIVDFNSHD 333 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~--~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~-rIdG--------sts~eeRe~iI~~Fn~~d 333 (1179)
..+|+..|.++|.+.+ ..+.|||||++|+++++.|..+|...++... ++-| +|++.+..++|+.|++
T Consensus 346 ~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~-- 423 (542)
T COG1111 346 EHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRK-- 423 (542)
T ss_pred CCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhc--
Confidence 3589999999999987 5678999999999999999999999988875 6655 5899999999999995
Q ss_pred CCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 334 SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 334 s~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
+.+.| |++|.+|.||||++.+|.||||||.-+|.+.+||.||.+|- +.=+||.|++
T Consensus 424 Ge~nV-LVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~---r~Grv~vLvt 479 (542)
T COG1111 424 GEYNV-LVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK---RKGRVVVLVT 479 (542)
T ss_pred CCceE-EEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC---CCCeEEEEEe
Confidence 44554 88899999999999999999999999999999999999984 5556777776
No 35
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.83 E-value=3.2e-19 Score=212.14 Aligned_cols=290 Identities=20% Similarity=0.275 Sum_probs=203.0
Q ss_pred ChhHHHHHHHHcCCC-cEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhch--hhhccCCccEEEEcCCccCCChh
Q 001037 1 MSMWQSELHKWLPSV-SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE 77 (1179)
Q Consensus 1 LsQW~~Ef~Kw~P~l-~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~--~~L~ki~wdlVIIDEAHriKN~~ 77 (1179)
+.||.+.+.+++... .+..+.|....- ....|+|+||+++.+.. ..+..-.|++||+|||||+....
T Consensus 93 ~~Qw~~~~~~~~~~~~~~g~~~~~~~~~----------~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~ 162 (442)
T COG1061 93 LDQWAEALKKFLLLNDEIGIYGGGEKEL----------EPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS 162 (442)
T ss_pred HHHHHHHHHHhcCCccccceecCceecc----------CCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH
Confidence 469999999998654 556666653211 01479999999999863 34444479999999999996432
Q ss_pred hHHHHHHHhhcCCc-EEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCCCCchhHHHHHHHHHH
Q 001037 78 SVLARDLDRYRCQR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIII 156 (1179)
Q Consensus 78 Sk~tkaL~~Lka~~-RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~ee~~~ii 156 (1179)
....+..+...+ +|+|||||...+...+..+..++.|-+
T Consensus 163 --~~~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~v-------------------------------------- 202 (442)
T COG1061 163 --YRRILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIV-------------------------------------- 202 (442)
T ss_pred --HHHHHHhhhcccceeeeccCceeecCCchhHHHHhcCCeE--------------------------------------
Confidence 233444455566 999999998555334444444333222
Q ss_pred HHHHHhhhhhhhhhhhhhh-h-cCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHHH
Q 001037 157 HRLHQILEPFMLRRRVEDV-E-GSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLN 234 (1179)
Q Consensus 157 ~rL~kvL~pf~LRRtKkDV-~-~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL~ 234 (1179)
......+. . ..|.+.....+.+.++..+...|..........+... .. .
T Consensus 203 -----------y~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~-----------------~~-~ 253 (442)
T COG1061 203 -----------YEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRAR-----------------GT-L 253 (442)
T ss_pred -----------eecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhh-----------------hh-h
Confidence 11221221 1 3578888999999999998888875433211100000 00 0
Q ss_pred HHHHHHHHHcCCCCCCCCcccccchhhhhcccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEc
Q 001037 235 NRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRID 314 (1179)
Q Consensus 235 ~~l~~LRkicnhP~L~~~~l~~l~~~~lv~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rId 314 (1179)
-.....+.+ ......|+..+..++.... .+.+++||+........|...|...++ +..++
T Consensus 254 ~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it 313 (442)
T COG1061 254 RAENEARRI------------------AIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAIT 313 (442)
T ss_pred hHHHHHHHH------------------hhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEE
Confidence 000011111 1223457778888887766 789999999999999999999998888 88999
Q ss_pred CCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccc-cCCcceEEEEEEE
Q 001037 315 GTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHR-IGQKREVKVIYME 392 (1179)
Q Consensus 315 Gsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhR-IGQkkeV~VyrLv 392 (1179)
|.++..+|..+++.|+.+. +. +|++++++.||+|++.|+++|+..+.-++..+.|++||+.| ...+..+.++.+.
T Consensus 314 ~~t~~~eR~~il~~fr~g~--~~-~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~ 389 (442)
T COG1061 314 GETPKEEREAILERFRTGG--IK-VLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYS 389 (442)
T ss_pred CCCCHHHHHHHHHHHHcCC--CC-EEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEE
Confidence 9999999999999999644 44 58888999999999999999999999999999999999999 5566665555443
No 36
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=2.1e-20 Score=180.28 Aligned_cols=101 Identities=17% Similarity=0.269 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhh
Q 001037 878 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 957 (1179)
Q Consensus 878 ~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~ 957 (1179)
+|.+-++|++.|++.+|++||.|+..|+++|.|.++||||++ |.+||||.+|++||++..|.++.+|..||.||+.||+
T Consensus 2 ~~~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~-I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 80 (104)
T cd05522 2 YEARIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQE-ISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAK 80 (104)
T ss_pred HHHHHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHH-hCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 466789999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHHHH
Q 001037 958 QFYGFSHEVRSEARKVHDLFFD 979 (1179)
Q Consensus 958 ~y~~~~se~~~~A~~l~~~f~~ 979 (1179)
.||+++|.+|.+|+.|++.|..
T Consensus 81 ~yn~~~s~i~~~A~~l~~~f~~ 102 (104)
T cd05522 81 LYNENDSQEYKDAVLLEKEARL 102 (104)
T ss_pred HHCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999976
No 37
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.79 E-value=5e-19 Score=172.17 Aligned_cols=106 Identities=24% Similarity=0.387 Sum_probs=102.1
Q ss_pred CcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcc---cCcccHHHHHHHHH
Q 001037 874 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR---LEYNGVMELVSDVQ 950 (1179)
Q Consensus 874 ~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~---~~Y~~v~~~~~d~~ 950 (1179)
||+..+++|..|+.+|.. +..+..|+.++.+ ++|+||++ |.+||||.+|++||+. +.|.++.+|..||.
T Consensus 1 ~~~~~~~~c~~il~~l~~------~~~s~~F~~pv~~-~~p~Y~~i-I~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~ 72 (109)
T cd05502 1 LSPIDQRKCERLLLELYC------HELSLPFHEPVSP-SVPNYYKI-IKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVR 72 (109)
T ss_pred CCHHHHHHHHHHHHHHHh------CCCChhhcCCCCC-CCCCHHHH-CCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHH
Confidence 789999999999999986 4779999999999 99999999 9999999999999998 69999999999999
Q ss_pred HHHhhhhhhcCCChHHHHHHHHHHHHHHHHHhhhcCC
Q 001037 951 FMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPD 987 (1179)
Q Consensus 951 lm~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~~~~ 987 (1179)
||++||+.||+++|.++..|..|+++|...++..|||
T Consensus 73 li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~~p~ 109 (109)
T cd05502 73 LMFKNCYKFNEEDSEVAQAGKELELFFEEQLKEILPD 109 (109)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence 9999999999999999999999999999999999997
No 38
>smart00297 BROMO bromo domain.
Probab=99.77 E-value=1.1e-18 Score=168.20 Aligned_cols=104 Identities=23% Similarity=0.393 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhh
Q 001037 877 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 956 (1179)
Q Consensus 877 ~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na 956 (1179)
..+++|++++.+|.+.+++ |+++..|+++|++.++|+||.+ |.+||||.+|++||++++|.++.+|..||.+|+.||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~--~~~~~~F~~~~~~~~~p~Y~~~-i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na 79 (107)
T smart00297 3 KLQKKLQSLLKAVLDKLDS--HRLSWPFLKPVDRKEAPDYYDI-IKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNA 79 (107)
T ss_pred hhHHHHHHHHHHHHHHHHh--CccchhhccCCChhhccCHHHH-hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 4577888888888887765 5899999999999999999999 999999999999999999999999999999999999
Q ss_pred hhhcCCChHHHHHHHHHHHHHHHHHhh
Q 001037 957 MQFYGFSHEVRSEARKVHDLFFDLLKI 983 (1179)
Q Consensus 957 ~~y~~~~se~~~~A~~l~~~f~~~~~~ 983 (1179)
+.||+++|+++++|..|+++|.+.|+.
T Consensus 80 ~~~n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 80 KTYNGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999976
No 39
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.77 E-value=1.6e-18 Score=167.55 Aligned_cols=105 Identities=17% Similarity=0.191 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhh
Q 001037 876 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 955 (1179)
Q Consensus 876 ~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~n 955 (1179)
.-+|+.-.++|..|.++.|++||.+++.|++||.+. |+||.+ |++||||.+|..||+++.|.++++|..||.+||.|
T Consensus 2 ~~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~~~--~~~~~~-ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~N 78 (110)
T cd05526 2 LLVQELLATLFVSVMNHQDEEGRCYSDSLAELPELA--VDGVGP-KKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLER 78 (110)
T ss_pred hHHHHHHHHHHHHHHhccCCCCCCchHHHHHCCCcc--cCchhh-hcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHH
Confidence 357888899999999999999999999999999955 566778 99999999999999999999999999999999999
Q ss_pred hhhhcCCChHHHHHHHHHHHHHHHHHhh
Q 001037 956 AMQFYGFSHEVRSEARKVHDLFFDLLKI 983 (1179)
Q Consensus 956 a~~y~~~~se~~~~A~~l~~~f~~~~~~ 983 (1179)
|+.||..+|++|+||..|+++|..+..+
T Consensus 79 Ar~yN~~~S~iy~dA~eLq~~f~~~rd~ 106 (110)
T cd05526 79 ARRLSRTDSEIYEDAVELQQFFIKIRDE 106 (110)
T ss_pred HHHhCcccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999976543
No 40
>PTZ00110 helicase; Provisional
Probab=99.75 E-value=5.9e-17 Score=197.57 Aligned_cols=119 Identities=23% Similarity=0.327 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhc
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 347 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGg 347 (1179)
|...|..+|..+...+.++||||+....++.|...|...++.++.++|+++.++|..+++.|+++ .+. +|++|++++
T Consensus 362 k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G--~~~-ILVaTdv~~ 438 (545)
T PTZ00110 362 KRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTG--KSP-IMIATDVAS 438 (545)
T ss_pred HHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcC--CCc-EEEEcchhh
Confidence 55666677777666788999999999999999999999999999999999999999999999954 444 588899999
Q ss_pred cCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEE
Q 001037 348 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 389 (1179)
Q Consensus 348 eGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~Vy 389 (1179)
+|||++.+++||+||+|+++..|.||+||++|.|.+..+..+
T Consensus 439 rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~ 480 (545)
T PTZ00110 439 RGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTF 480 (545)
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEE
Confidence 999999999999999999999999999999999987665333
No 41
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.75 E-value=2.6e-18 Score=163.68 Aligned_cols=95 Identities=21% Similarity=0.329 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhhh
Q 001037 880 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQF 959 (1179)
Q Consensus 880 ~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~y 959 (1179)
++|..|+++|.++. .+..|..++.+.+.||||++ |.+||||.+|++||+++.|.++.+|..||+||++||+.|
T Consensus 3 ~~c~~il~~l~~~~------~s~~F~~pv~~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 75 (97)
T cd05505 3 QKCEEILSKILKYR------FSWPFREPVTADEAEDYKKV-ITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKY 75 (97)
T ss_pred HHHHHHHHHHHhCC------CcccccCCCChhhcccHHHH-cCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 68999999999765 46789999999999999999 999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHH
Q 001037 960 YGFSHEVRSEARKVHDLFFDLL 981 (1179)
Q Consensus 960 ~~~~se~~~~A~~l~~~f~~~~ 981 (1179)
|+++|.++++|.+|.++|.+.|
T Consensus 76 N~~~s~i~~~a~~le~~f~~~~ 97 (97)
T cd05505 76 YENGSYVLSCMRKTEQCCVNLL 97 (97)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998764
No 42
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.74 E-value=1.5e-16 Score=190.85 Aligned_cols=107 Identities=19% Similarity=0.236 Sum_probs=98.0
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeec
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY 361 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~ 361 (1179)
.+.++||||.....++.+...|...|+.+..++|+++.++|..+++.|.. +.+.| |++|.++++|||++.+++||+|
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~--g~~~v-LVaT~~~~~GID~p~V~~VI~~ 301 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQR--DEIQV-VVATVAFGMGINKPDVRFVIHY 301 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHc--CCCcE-EEEechhhccCCcccceEEEEe
Confidence 46778999999999999999999999999999999999999999999995 45554 7788999999999999999999
Q ss_pred CCCCCcchHHHHhhcccccCCcceEEEEEE
Q 001037 362 DPDPNPKNEEQAVARAHRIGQKREVKVIYM 391 (1179)
Q Consensus 362 D~pWNP~~~eQAiGRIhRIGQkkeV~VyrL 391 (1179)
++|.++..|.|++||++|.|+...+.+++-
T Consensus 302 ~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~ 331 (470)
T TIGR00614 302 SLPKSMESYYQESGRAGRDGLPSECHLFYA 331 (470)
T ss_pred CCCCCHHHHHhhhcCcCCCCCCceEEEEec
Confidence 999999999999999999999888766654
No 43
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.73 E-value=2.3e-16 Score=188.72 Aligned_cols=115 Identities=23% Similarity=0.400 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhc
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 347 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGg 347 (1179)
|+..|..+|... .+.++||||+....++.+...|...++.+..++|+++..+|..+++.|+++ .++ +|++|++++
T Consensus 229 k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g--~~~-vLVaTdv~~ 303 (460)
T PRK11776 229 RLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANR--SCS-VLVATDVAA 303 (460)
T ss_pred HHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcC--CCc-EEEEecccc
Confidence 445555555432 356899999999999999999999999999999999999999999999954 445 577889999
Q ss_pred cCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEE
Q 001037 348 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 387 (1179)
Q Consensus 348 eGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~ 387 (1179)
+|||++.+++||+||+|.++..|.||+||++|.|+...+.
T Consensus 304 rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai 343 (460)
T PRK11776 304 RGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLAL 343 (460)
T ss_pred cccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEE
Confidence 9999999999999999999999999999999999876543
No 44
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.72 E-value=1.4e-17 Score=163.48 Aligned_cols=101 Identities=14% Similarity=0.191 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhh
Q 001037 877 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 956 (1179)
Q Consensus 877 ~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na 956 (1179)
..-.+|..|+++|..+. .+-.|+.++.+.++||||++ |.+||||.+|++||+.++|.++.+|..||.||+.||
T Consensus 12 ~~~~~c~~il~~l~~~~------~s~~F~~pvd~~~~pdY~~v-I~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na 84 (115)
T cd05504 12 LNLSALEQLLVEIVKHK------DSWPFLRPVSKIEVPDYYDI-IKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNC 84 (115)
T ss_pred HHHHHHHHHHHHHHhCC------CchhhcCCCCccccccHHHH-hcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 45678999999999864 46789999999999999999 999999999999999999999999999999999999
Q ss_pred hhhcCCChHHHHHHHHHHHHHHHHHhhh
Q 001037 957 MQFYGFSHEVRSEARKVHDLFFDLLKIA 984 (1179)
Q Consensus 957 ~~y~~~~se~~~~A~~l~~~f~~~~~~~ 984 (1179)
+.||+++|.+|++|..|+++|...++.+
T Consensus 85 ~~yN~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 85 FLYNPEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999864
No 45
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.71 E-value=8.8e-16 Score=182.20 Aligned_cols=117 Identities=19% Similarity=0.281 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhc
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 347 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGg 347 (1179)
|+..|..++.. ....++||||.....++.|...|...++.+..++|+++..+|..++..|++ +.+. +|++|++++
T Consensus 232 k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~--G~~~-vLVaTd~~~ 306 (434)
T PRK11192 232 KTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTD--GRVN-VLVATDVAA 306 (434)
T ss_pred HHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhC--CCCc-EEEEccccc
Confidence 44455555542 245789999999999999999999999999999999999999999999995 4455 577889999
Q ss_pred cCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEE
Q 001037 348 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 389 (1179)
Q Consensus 348 eGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~Vy 389 (1179)
+|||++.+++||+||+|+++..|.||+||++|.|.+..+.++
T Consensus 307 ~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l 348 (434)
T PRK11192 307 RGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISL 348 (434)
T ss_pred cCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEE
Confidence 999999999999999999999999999999999987665443
No 46
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.71 E-value=2e-17 Score=159.03 Aligned_cols=98 Identities=18% Similarity=0.294 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhhhccCCchhHhhhhhcccc--cCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhh
Q 001037 880 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRI--ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 957 (1179)
Q Consensus 880 ~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~--~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~ 957 (1179)
+.|..||++|... ..+.++..|+.+++.. ++||||++ |.+||||.+|++||++++|.++.+|..||.||+.||+
T Consensus 3 ~~c~~Il~~l~~~---~~~~~s~~F~~pvd~~~~~~pdY~~~-I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~ 78 (102)
T cd05499 3 KFCEEVLKELMKP---KHSAYNWPFLDPVDPVALNIPNYFSI-IKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCY 78 (102)
T ss_pred HHHHHHHHHHHcc---cCCcccchhcCCCCccccCCCCHHHH-hcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 6899999999775 3478999999997766 99999999 9999999999999999999999999999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHH
Q 001037 958 QFYGFSHEVRSEARKVHDLFFDLL 981 (1179)
Q Consensus 958 ~y~~~~se~~~~A~~l~~~f~~~~ 981 (1179)
.||+++|.++++|..|+++|..++
T Consensus 79 ~yn~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 79 TFNPEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998753
No 47
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.71 E-value=5.1e-16 Score=185.70 Aligned_cols=104 Identities=25% Similarity=0.348 Sum_probs=95.2
Q ss_pred CCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecC
Q 001037 283 GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD 362 (1179)
Q Consensus 283 g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D 362 (1179)
..++||||.....++.|...|...++.+..++|.++..+|..+++.|++ +.+. +|++|+++++|||+..+++||+||
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~--g~~~-iLVaTdv~~rGiDip~v~~VI~~~ 321 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS--GDIR-VLVATDIAARGLDIEELPHVVNYE 321 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHc--CCCc-EEEEccHHhcCCCcccCCEEEEeC
Confidence 4689999999999999999999999999999999999999999999995 4455 577889999999999999999999
Q ss_pred CCCCcchHHHHhhcccccCCcceEEEE
Q 001037 363 PDPNPKNEEQAVARAHRIGQKREVKVI 389 (1179)
Q Consensus 363 ~pWNP~~~eQAiGRIhRIGQkkeV~Vy 389 (1179)
+|.++..|.|++||++|.|.+..+.++
T Consensus 322 ~P~~~~~yvqR~GRaGR~g~~G~ai~l 348 (456)
T PRK10590 322 LPNVPEDYVHRIGRTGRAAATGEALSL 348 (456)
T ss_pred CCCCHHHhhhhccccccCCCCeeEEEE
Confidence 999999999999999999987765443
No 48
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.71 E-value=5.8e-16 Score=189.81 Aligned_cols=115 Identities=20% Similarity=0.330 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhc
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 347 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGg 347 (1179)
|+..|..+|.. ..+.++||||+....++.|.+.|...++.+..++|.++..+|..+++.|+++ .+. +|++|++++
T Consensus 244 k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G--~~~-VLVaTdv~a 318 (572)
T PRK04537 244 KQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKG--QLE-ILVATDVAA 318 (572)
T ss_pred HHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcC--CCe-EEEEehhhh
Confidence 33444444432 3467999999999999999999999999999999999999999999999954 444 588889999
Q ss_pred cCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEE
Q 001037 348 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 387 (1179)
Q Consensus 348 eGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~ 387 (1179)
+|||+..+++||+||+|+++..|.|++||++|.|....+.
T Consensus 319 rGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai 358 (572)
T PRK04537 319 RGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI 358 (572)
T ss_pred cCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEE
Confidence 9999999999999999999999999999999999876553
No 49
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.71 E-value=3.6e-17 Score=159.81 Aligned_cols=106 Identities=18% Similarity=0.271 Sum_probs=97.0
Q ss_pred cHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHh
Q 001037 875 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 954 (1179)
Q Consensus 875 ~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~ 954 (1179)
.+..+..|.+|+++|.++. ..+..|+.+|.+.+.||||.+ |++||||.+|.+||+++.|.++.+|..||.||+.
T Consensus 5 ~~~~~~~~~~il~~l~~~~-----~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~ 78 (112)
T cd05510 5 QEEFYESLDKVLNELKTYT-----EHSTPFLTKVSKREAPDYYDI-IKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWK 78 (112)
T ss_pred HHHHHHHHHHHHHHHHhcC-----ccccchhcCCChhhcCCHHHH-hcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 3678899999999999886 347899999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCCCh-HHHHHHHHHHHHHHHHHhhhcCC
Q 001037 955 GAMQFYGFSH-EVRSEARKVHDLFFDLLKIAFPD 987 (1179)
Q Consensus 955 na~~y~~~~s-e~~~~A~~l~~~f~~~~~~~~~~ 987 (1179)
||+.||+..| .++++|..|.+.|.+.|+.. ||
T Consensus 79 N~~~yN~~~s~~~~~~A~~l~~~~~~~~~~~-~~ 111 (112)
T cd05510 79 NCLLYNSDPSHPLRRHANFMKKKAEHLLKLI-PD 111 (112)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC-CC
Confidence 9999999755 67899999999999888754 66
No 50
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.71 E-value=2.4e-17 Score=162.52 Aligned_cols=104 Identities=13% Similarity=0.202 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhh
Q 001037 876 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 955 (1179)
Q Consensus 876 ~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~n 955 (1179)
+..++.|..|+++|..+. .+..|+.++...++||||.+ |.+||||.+|.+||+++.|.++.+|..||.|||.|
T Consensus 4 ~~w~~~c~~il~~l~~~~------~s~~F~~PVd~~~~pdY~~i-Ik~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~N 76 (119)
T cd05496 4 SDWKKQCKELVNLMWDCE------DSEPFRQPVDLLKYPDYRDI-IDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSN 76 (119)
T ss_pred HHHHHHHHHHHHHHHhCC------ccccccCCCChhhcCcHHHH-hCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 356899999999999864 57889999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCC-ChHHHHHHHHHHHHHHHHHhhhcC
Q 001037 956 AMQFYGF-SHEVRSEARKVHDLFFDLLKIAFP 986 (1179)
Q Consensus 956 a~~y~~~-~se~~~~A~~l~~~f~~~~~~~~~ 986 (1179)
|+.||+. +|.+|.+|..|.++|...++...+
T Consensus 77 a~~yN~~~~s~i~~~a~~L~~~F~~~~~~l~~ 108 (119)
T cd05496 77 SKSYTPNKRSRIYSMTLRLSALFEEHIKKIIS 108 (119)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999985 999999999999999999998854
No 51
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.71 E-value=4.6e-16 Score=184.20 Aligned_cols=114 Identities=18% Similarity=0.260 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhc
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 347 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGg 347 (1179)
|+..|..++.. ....++||||+....++.|...|...|+.+..++|.++..+|..+++.|+++ ++. +|++|++++
T Consensus 242 k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g--~~~-vLVaTdv~~ 316 (423)
T PRK04837 242 KMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRG--DLD-ILVATDVAA 316 (423)
T ss_pred HHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcC--CCc-EEEEechhh
Confidence 44455555543 2357899999999999999999999999999999999999999999999954 455 588889999
Q ss_pred cCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceE
Q 001037 348 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 386 (1179)
Q Consensus 348 eGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV 386 (1179)
+|||++.+++||+||+|+++..|.||+||++|.|+.-.+
T Consensus 317 rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~a 355 (423)
T PRK04837 317 RGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHS 355 (423)
T ss_pred cCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeE
Confidence 999999999999999999999999999999999987655
No 52
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.71 E-value=2.5e-17 Score=158.37 Aligned_cols=99 Identities=21% Similarity=0.335 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHhhhccCCchhHhhhhhcc--cccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhh
Q 001037 878 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWK--RIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 955 (1179)
Q Consensus 878 ~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~--r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~n 955 (1179)
+++.|+.|+++|..+ +|+.++..|++++. +.++||||++ |.+||||.+|++||++++|.++.+|..||.||+.|
T Consensus 1 ~~~~c~~il~~l~~~---~~~~~a~~F~~pv~~~~~~~p~Y~~~-I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~N 76 (102)
T cd05498 1 QLKFCSGILKELFSK---KHKAYAWPFYKPVDPEALGLHDYHDI-IKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSN 76 (102)
T ss_pred ChhHHHHHHHHHHhC---CCccccCcccCcCCccccCCCcHHHH-ccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 368999999999886 77999999999755 4579999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCChHHHHHHHHHHHHHHHH
Q 001037 956 AMQFYGFSHEVRSEARKVHDLFFDL 980 (1179)
Q Consensus 956 a~~y~~~~se~~~~A~~l~~~f~~~ 980 (1179)
|+.||+++|.++.+|..|+++|..+
T Consensus 77 a~~yn~~~s~i~~~a~~l~~~fe~~ 101 (102)
T cd05498 77 CYKYNPPDHPVHAMARKLQDVFEDR 101 (102)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999764
No 53
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.69 E-value=1.1e-15 Score=185.52 Aligned_cols=115 Identities=24% Similarity=0.309 Sum_probs=97.8
Q ss_pred HHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHH-cCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccC
Q 001037 271 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW-RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRG 349 (1179)
Q Consensus 271 ~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~-~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeG 349 (1179)
.|..+|........++|||+.....++.|...|.. .++.+..++|+++.++|..+++.|+++ .+. +|++|+++++|
T Consensus 355 ~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G--~~~-ILVaTdvl~rG 431 (518)
T PLN00206 355 KLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVG--EVP-VIVATGVLGRG 431 (518)
T ss_pred HHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCC--CCC-EEEEecHhhcc
Confidence 34444444333346899999999999999999975 699999999999999999999999954 455 58888999999
Q ss_pred CCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEE
Q 001037 350 LNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388 (1179)
Q Consensus 350 LNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~V 388 (1179)
||+..+++||+||+|.++..|.||+||++|.|....+.+
T Consensus 432 iDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~ 470 (518)
T PLN00206 432 VDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIV 470 (518)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEE
Confidence 999999999999999999999999999999997655433
No 54
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.69 E-value=7.3e-17 Score=154.84 Aligned_cols=99 Identities=18% Similarity=0.282 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhh
Q 001037 878 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 957 (1179)
Q Consensus 878 ~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~ 957 (1179)
.++.|.+|+++|.++. .+..|++++.+.+.|+||++ |.+||||.+|++||+++.|.++.+|..||.||+.||+
T Consensus 2 ~~~~~~~il~~l~~~~------~a~~F~~pv~~~~~p~Y~~~-I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~ 74 (101)
T cd05509 2 LYTQLKKVLDSLKNHK------SAWPFLEPVDKEEAPDYYDV-IKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCR 74 (101)
T ss_pred hHHHHHHHHHHHHhCC------CchhhcCCCChhhcCCHHHH-hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 4788999999998864 57899999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHhh
Q 001037 958 QFYGFSHEVRSEARKVHDLFFDLLKI 983 (1179)
Q Consensus 958 ~y~~~~se~~~~A~~l~~~f~~~~~~ 983 (1179)
.||+.+|.++++|..|+++|.+.|+.
T Consensus 75 ~yN~~~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 75 LYNGPDTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999874
No 55
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.69 E-value=6.3e-17 Score=154.35 Aligned_cols=94 Identities=14% Similarity=0.256 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhhh
Q 001037 880 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQF 959 (1179)
Q Consensus 880 ~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~y 959 (1179)
..|..|++.|..+ ..+-.|+.++...++||||.+ |++||||.+|++||++++|.++.+|..||.||+.||+.|
T Consensus 3 ~~c~~il~~l~~~------~~~~~F~~pv~~~~~p~Y~~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 75 (97)
T cd05503 3 ALCETILDEMEAH------EDAWPFLEPVNTKLVPGYRKI-IKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETF 75 (97)
T ss_pred HHHHHHHHHHHcC------CCchhhcCCCCccccCCHHHH-hCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5799999999884 678899999999999999999 999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHH
Q 001037 960 YGFSHEVRSEARKVHDLFFDL 980 (1179)
Q Consensus 960 ~~~~se~~~~A~~l~~~f~~~ 980 (1179)
|+++|.++++|..|+++|-.+
T Consensus 76 N~~~s~i~~~a~~l~~~f~~~ 96 (97)
T cd05503 76 NEDDSEVGRAGHNMRKFFEKR 96 (97)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999765
No 56
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.68 E-value=1e-16 Score=155.78 Aligned_cols=104 Identities=16% Similarity=0.205 Sum_probs=94.6
Q ss_pred cHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcc--cccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHH
Q 001037 875 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWK--RIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 952 (1179)
Q Consensus 875 ~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~--r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm 952 (1179)
++.+.++|..++++|.... ..+..|...+. +.+.||||++ |++||||.+|.+||++++|.++.+|..||.||
T Consensus 1 ~~~l~~~~~~il~~l~~~~-----~~s~~F~~PV~~~~~~~pdY~~i-Ik~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li 74 (108)
T cd05495 1 PEELRQALMPTLEKLYKQD-----PESLPFRQPVDPKLLGIPDYFDI-VKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLM 74 (108)
T ss_pred CHHHHHHHHHHHHHHHHcC-----cccchhcCCCCccccCCCcHHHH-hCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 4678999999999998862 35668888655 4589999999 99999999999999999999999999999999
Q ss_pred HhhhhhhcCCChHHHHHHHHHHHHHHHHHhhh
Q 001037 953 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 984 (1179)
Q Consensus 953 ~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~ 984 (1179)
++||+.||+.+|.+|++|.+|.++|...|+..
T Consensus 75 ~~Na~~yN~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 75 FDNAWLYNRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998754
No 57
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.68 E-value=4.4e-15 Score=183.57 Aligned_cols=117 Identities=18% Similarity=0.213 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhc
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 347 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGg 347 (1179)
|+..|.++|.. ....++||||.....++.|...|...|+.+..++|.++..+|..+++.|+++ .+. +|++|++++
T Consensus 232 k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G--~~~-ILVATdv~a 306 (629)
T PRK11634 232 KNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG--RLD-ILIATDVAA 306 (629)
T ss_pred HHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCC--CCC-EEEEcchHh
Confidence 55556666543 2346899999999999999999999999999999999999999999999954 444 588899999
Q ss_pred cCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEE
Q 001037 348 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 389 (1179)
Q Consensus 348 eGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~Vy 389 (1179)
+|||++.+++||+||+|.++..|.|++||++|.|..-.+.++
T Consensus 307 rGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~ 348 (629)
T PRK11634 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLF 348 (629)
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEE
Confidence 999999999999999999999999999999999987655444
No 58
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.68 E-value=1.9e-15 Score=181.52 Aligned_cols=116 Identities=19% Similarity=0.298 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhc
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 347 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGg 347 (1179)
|...|..++.. ....++||||+....++.|...|...++.+..++|.++.++|.++++.|+++ .+. +|++|++++
T Consensus 322 k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G--~~~-vLvaT~~l~ 396 (475)
T PRK01297 322 KYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREG--KIR-VLVATDVAG 396 (475)
T ss_pred HHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCC--CCc-EEEEccccc
Confidence 33444444432 2346999999999999999999999999999999999999999999999954 455 577889999
Q ss_pred cCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEE
Q 001037 348 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388 (1179)
Q Consensus 348 eGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~V 388 (1179)
+|||+..+++||+||+|++...|.|+.||++|.|+...+.+
T Consensus 397 ~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~ 437 (475)
T PRK01297 397 RGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSIS 437 (475)
T ss_pred cCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEE
Confidence 99999999999999999999999999999999998765433
No 59
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.68 E-value=1.2e-16 Score=155.14 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=91.9
Q ss_pred cHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccc--cCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHH
Q 001037 875 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRI--ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 952 (1179)
Q Consensus 875 ~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~--~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm 952 (1179)
+.+++--++.|+++|.. |..+..|..++... +.||||++ |++||||.+|..||++++|.++.+|..||.||
T Consensus 3 ~~q~~~~~~~il~~l~~------~~~s~~F~~PVd~~~~~~pdY~~i-Ik~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li 75 (107)
T cd05497 3 TNQLQYLLKVVLKALWK------HKFAWPFQQPVDAVKLNLPDYHKI-IKTPMDLGTIKKRLENNYYWSASECIQDFNTM 75 (107)
T ss_pred cHHHHHHHHHHHHHHHh------CCcCccccCCCCcccccCCcHHHH-HcCcccHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 34445555677777776 57799999997754 79999999 99999999999999999999999999999999
Q ss_pred HhhhhhhcCCChHHHHHHHHHHHHHHHHHhhh
Q 001037 953 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 984 (1179)
Q Consensus 953 ~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~ 984 (1179)
+.||+.||+++|.+++.|..|.++|.+.|+.|
T Consensus 76 ~~Na~~yN~~~s~i~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 76 FTNCYIYNKPGDDVVLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999864
No 60
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.68 E-value=2.3e-15 Score=185.51 Aligned_cols=104 Identities=23% Similarity=0.253 Sum_probs=95.4
Q ss_pred CCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecC
Q 001037 283 GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD 362 (1179)
Q Consensus 283 g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D 362 (1179)
+.++||||......+.+..+|...|+.+..++|+++.++|..+++.|..+. +. +|++|.++|.|||++.++.||+|+
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~--~~-vlVaT~a~~~GID~p~v~~VI~~~ 300 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDD--VK-VMVATNAFGMGIDKPNVRFVIHYD 300 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCC--Cc-EEEEechhhccCcCCCCCEEEEcC
Confidence 678999999999999999999999999999999999999999999998543 44 588889999999999999999999
Q ss_pred CCCCcchHHHHhhcccccCCcceEEEE
Q 001037 363 PDPNPKNEEQAVARAHRIGQKREVKVI 389 (1179)
Q Consensus 363 ~pWNP~~~eQAiGRIhRIGQkkeV~Vy 389 (1179)
+|+|...+.|++||++|.|+...+.++
T Consensus 301 ~p~s~~~y~Q~~GRaGR~G~~~~~il~ 327 (591)
T TIGR01389 301 MPGNLESYYQEAGRAGRDGLPAEAILL 327 (591)
T ss_pred CCCCHHHHhhhhccccCCCCCceEEEe
Confidence 999999999999999999987776443
No 61
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.68 E-value=2.5e-15 Score=185.65 Aligned_cols=105 Identities=19% Similarity=0.201 Sum_probs=96.1
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeec
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY 361 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~ 361 (1179)
.+.++||||.....++.+...|...|+.+..++|+++.++|..+++.|..+ .+. +|++|.+++.|||++.++.||+|
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g--~~~-VLVaT~a~~~GIDip~V~~VI~~ 311 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRD--DLQ-IVVATVAFGMGINKPNVRFVVHF 311 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCC--CCC-EEEEechhhccCCCCCcCEEEEe
Confidence 467899999999999999999999999999999999999999999999854 444 57888999999999999999999
Q ss_pred CCCCCcchHHHHhhcccccCCcceEEEE
Q 001037 362 DPDPNPKNEEQAVARAHRIGQKREVKVI 389 (1179)
Q Consensus 362 D~pWNP~~~eQAiGRIhRIGQkkeV~Vy 389 (1179)
|+|.+...|.|++||++|.|....+.++
T Consensus 312 d~P~s~~~y~Qr~GRaGR~G~~~~~ill 339 (607)
T PRK11057 312 DIPRNIESYYQETGRAGRDGLPAEAMLF 339 (607)
T ss_pred CCCCCHHHHHHHhhhccCCCCCceEEEE
Confidence 9999999999999999999987765444
No 62
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.68 E-value=1.4e-16 Score=159.35 Aligned_cols=107 Identities=20% Similarity=0.222 Sum_probs=96.1
Q ss_pred CCcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccc-cCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHH
Q 001037 873 KMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRI-ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 951 (1179)
Q Consensus 873 ~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~-~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~l 951 (1179)
.+.+.++.+|.+++.+|. +..++.++..|..++.+. ..|+||++ |.+||||.+|++||+++.|.++.+|..||.|
T Consensus 20 ~~~~~~~~~i~~~l~~l~---~~~~~~~~~~F~~pv~~~~~~p~Y~~i-I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~L 95 (128)
T cd05529 20 HIRDEERERLISGLDKLL---LSLQLEIAEYFEYPVDLRAWYPDYWNR-VPVPMDLETIRSRLENRYYRSLEALRHDVRL 95 (128)
T ss_pred CCCHHHHHHHHHHHHHHH---hcccCcccccccCCCCccccCCcHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 345566666666555554 447999999999999999 99999999 9999999999999999999999999999999
Q ss_pred HHhhhhhhcCCChHHHHHHHHHHHHHHHHHhh
Q 001037 952 MLKGAMQFYGFSHEVRSEARKVHDLFFDLLKI 983 (1179)
Q Consensus 952 m~~na~~y~~~~se~~~~A~~l~~~f~~~~~~ 983 (1179)
|+.||+.||+++|.+++.|+.|.++|..+|+-
T Consensus 96 i~~Na~~yN~~~s~i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 96 ILSNAETFNEPNSEIAKKAKRLSDWLLRILSS 127 (128)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999998863
No 63
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.68 E-value=1.3e-16 Score=154.02 Aligned_cols=100 Identities=17% Similarity=0.209 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhh
Q 001037 877 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 956 (1179)
Q Consensus 877 ~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na 956 (1179)
...+.|..|+++|.+ |..+..|.+++.....||||++ |.+||||.+|.+||++++|.++.||..||.||+.||
T Consensus 3 ~~~~~~~~il~~l~~------~~~a~~F~~pV~~~~~p~Y~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 75 (104)
T cd05507 3 AWKKAILLVYRTLAS------HRYASVFLKPVTEDIAPGYHSV-VYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNA 75 (104)
T ss_pred HHHHHHHHHHHHHHc------CCCCHhhcCCCCccccCCHHHH-hCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 467899999999987 5569999999999999999999 999999999999999999999999999999999999
Q ss_pred hhhcCCChHHHHHHHHHHHHHHHHHhh
Q 001037 957 MQFYGFSHEVRSEARKVHDLFFDLLKI 983 (1179)
Q Consensus 957 ~~y~~~~se~~~~A~~l~~~f~~~~~~ 983 (1179)
+.||+++|.++.+|..|++.|.++|..
T Consensus 76 ~~yN~~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 76 IMYNSSDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999998864
No 64
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.67 E-value=2.1e-15 Score=178.57 Aligned_cols=120 Identities=25% Similarity=0.370 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHHh-hcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhh
Q 001037 267 GKLWILDRILIKLQ-RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 345 (1179)
Q Consensus 267 gKl~~L~~IL~el~-~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~A 345 (1179)
+|...|..+|..+. ..+.||||||+.....+.|...|...+++.+.|||..++.+|..+|+.|++++.. +|++|++
T Consensus 324 ~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~---vLVATdV 400 (519)
T KOG0331|consen 324 AKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSP---VLVATDV 400 (519)
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcc---eEEEccc
Confidence 58888888888876 4456999999999999999999999999999999999999999999999965554 6889999
Q ss_pred hccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEE
Q 001037 346 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 389 (1179)
Q Consensus 346 GgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~Vy 389 (1179)
++.||++...++||+||+|-|...|.+|+||.+|.|++-....+
T Consensus 401 AaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tf 444 (519)
T KOG0331|consen 401 AARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITF 444 (519)
T ss_pred ccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEE
Confidence 99999999999999999999999999999999999988775433
No 65
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.67 E-value=2.9e-14 Score=173.58 Aligned_cols=119 Identities=21% Similarity=0.253 Sum_probs=98.8
Q ss_pred ccCHHHHHHHHHHHHhh--cCCeEEEeehhHHHHHHHHHHHHH---cCCeEEEEcC--------CCCHHHHHHHHHHhcc
Q 001037 265 SCGKLWILDRILIKLQR--TGHRVLLFSTMTKLLDILEEYLQW---RQLVYRRIDG--------TTSLEDRESAIVDFNS 331 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~--~g~KVLIFSqft~~ldiLe~~L~~---~Gi~~~rIdG--------sts~eeRe~iI~~Fn~ 331 (1179)
..+|++.|.++|.+... ...++|||+.++..+..|..+|.. .|++...+.| +++..+..++|+.|++
T Consensus 393 ~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~ 472 (746)
T KOG0354|consen 393 ENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRD 472 (746)
T ss_pred cChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhC
Confidence 35799999999988765 457999999999999999999983 2556555555 5788899999999996
Q ss_pred CCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEE
Q 001037 332 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 387 (1179)
Q Consensus 332 ~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~ 387 (1179)
+ .+. +|++|.+|.||||+..||.||.||..-||.+++||+|| +|.-+.+-|.
T Consensus 473 G--~~N-vLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~ns~~vl 524 (746)
T KOG0354|consen 473 G--EIN-VLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRARNSKCVL 524 (746)
T ss_pred C--Ccc-EEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccccCCeEEE
Confidence 4 444 58889999999999999999999999999999999999 7755544443
No 66
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.67 E-value=2.2e-16 Score=152.13 Aligned_cols=101 Identities=19% Similarity=0.277 Sum_probs=94.1
Q ss_pred CcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcc--cccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHH
Q 001037 874 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWK--RIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 951 (1179)
Q Consensus 874 ~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~--r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~l 951 (1179)
||+-+.+.|.+++.+|... ..+..|...+. +.++||||++ |.+||||.+|++||+++.|.++.+|..||.|
T Consensus 1 ~t~~~~~~~~~ii~~l~~~------~~a~~F~~pv~~~~~~~p~Y~~~-I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~l 73 (103)
T cd05500 1 MTKHQHKFLLSSIRSLKRL------KDARPFLVPVDPVKLNIPHYPTI-IKKPMDLGTIERKLKSNVYTSVEEFTADFNL 73 (103)
T ss_pred CCHHHHHHHHHHHHHHHcC------CCChhhcCCCCcccccCCCHHHH-hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 7889999999999999854 45789999855 6689999999 9999999999999999999999999999999
Q ss_pred HHhhhhhhcCCChHHHHHHHHHHHHHHHHH
Q 001037 952 MLKGAMQFYGFSHEVRSEARKVHDLFFDLL 981 (1179)
Q Consensus 952 m~~na~~y~~~~se~~~~A~~l~~~f~~~~ 981 (1179)
|+.||+.||+++|.++.+|..|++.|...|
T Consensus 74 i~~Na~~yN~~~s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 74 MVDNCLTFNGPEHPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998764
No 67
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.65 E-value=2.2e-15 Score=172.62 Aligned_cols=276 Identities=20% Similarity=0.353 Sum_probs=188.0
Q ss_pred ChhHHHHHHHHcC--CCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhc----------hhhhccCCccEEEEc
Q 001037 1 MSMWQSELHKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----------RSKLSKVDWKYIIID 68 (1179)
Q Consensus 1 LsQW~~Ef~Kw~P--~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d----------~~~L~ki~wdlVIID 68 (1179)
|.||..+|..|.- .-.+..|+.+..++. .....||||||.++..- .++|....|.++|+|
T Consensus 358 VeQWkqQfk~wsti~d~~i~rFTsd~Ke~~--------~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllD 429 (776)
T KOG1123|consen 358 VEQWKQQFKQWSTIQDDQICRFTSDAKERF--------PSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLD 429 (776)
T ss_pred HHHHHHHHHhhcccCccceEEeeccccccC--------CCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEee
Confidence 5799999999973 345666766644432 34678999999998753 456788899999999
Q ss_pred CCccCCChhhHHHHHHHhhcCCcEEEEeccCCCCChHHHHHHHhhh-cCCCCCChHHHHHHhcCccccCCCCCCCCchhH
Q 001037 69 EAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLL-LPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWL 147 (1179)
Q Consensus 69 EAHriKN~~Sk~tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~fL-~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l 147 (1179)
|+|.+ +..-.-+.|.-+.+..+|+||||-+..+ |-..=|||| .|.++.- +| .
T Consensus 430 EVHvv--PA~MFRRVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYEA-----nW------------------m 482 (776)
T KOG1123|consen 430 EVHVV--PAKMFRRVLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA-----NW------------------M 482 (776)
T ss_pred hhccc--hHHHHHHHHHHHHHHhhccceeEEeecc--ccccccceeecchhhhc-----cH------------------H
Confidence 99998 4333444445558888999999987654 222223444 4544321 11 1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHH
Q 001037 148 ETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQA 227 (1179)
Q Consensus 148 ~~ee~~~ii~rL~kvL~pf~LRRtKkDV~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~ 227 (1179)
. |.+ ...+.......|||+||+. .|........ ..
T Consensus 483 d----------L~~--------------kGhIA~VqCaEVWCpMt~e---Fy~eYL~~~t--------~k---------- 517 (776)
T KOG1123|consen 483 D----------LQK--------------KGHIAKVQCAEVWCPMTPE---FYREYLRENT--------RK---------- 517 (776)
T ss_pred H----------HHh--------------CCceeEEeeeeeecCCCHH---HHHHHHhhhh--------hh----------
Confidence 1 000 0113334466899999985 4443332100 00
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCcccccchhhhhcccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcC
Q 001037 228 KVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ 307 (1179)
Q Consensus 228 ~~~~sL~~~l~~LRkicnhP~L~~~~l~~l~~~~lv~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~G 307 (1179)
.+ |--+ -...|+.+..-++......|.|+|||+...-.+...+-.| |
T Consensus 518 ----r~------lLyv--------------------MNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl---~ 564 (776)
T KOG1123|consen 518 ----RM------LLYV--------------------MNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKL---G 564 (776)
T ss_pred ----hh------eeee--------------------cCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHc---C
Confidence 00 0000 1124888888888888889999999998766555444333 3
Q ss_pred CeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCC-CcchHHHHhhcccccCCcc--
Q 001037 308 LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKR-- 384 (1179)
Q Consensus 308 i~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pW-NP~~~eQAiGRIhRIGQkk-- 384 (1179)
-+ .|.|.|++.+|.+|++.|+. ++.+.-|++| ++|...++|+.|+.+|-+.... +-.++.||.|||.|.-..+
T Consensus 565 Kp--fIYG~Tsq~ERm~ILqnFq~-n~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de 640 (776)
T KOG1123|consen 565 KP--FIYGPTSQNERMKILQNFQT-NPKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDE 640 (776)
T ss_pred Cc--eEECCCchhHHHHHHHhccc-CCccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCcc
Confidence 33 48899999999999999996 7777777777 9999999999999999998877 5667889999999975332
Q ss_pred --eEEEEEEEe
Q 001037 385 --EVKVIYMEA 393 (1179)
Q Consensus 385 --eV~VyrLva 393 (1179)
.+++|-|++
T Consensus 641 ~fnafFYSLVS 651 (776)
T KOG1123|consen 641 EFNAFFYSLVS 651 (776)
T ss_pred ccceeeeeeee
Confidence 256666765
No 68
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.64 E-value=5e-16 Score=148.81 Aligned_cols=97 Identities=16% Similarity=0.241 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhh
Q 001037 879 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 958 (1179)
Q Consensus 879 ~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~ 958 (1179)
.++|..++-+|....+. ..|..-| ...||||.+ |++||||.+|.+||+++.|.++.+|+.||.||++||+.
T Consensus 4 l~~ce~il~~l~~~~~s------~~f~~~p--~~~pdY~~i-Ik~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~ 74 (102)
T cd05501 4 LLKCEFLLLKVYCMSKS------GFFISKP--YYIRDYCQG-IKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKL 74 (102)
T ss_pred HHHHHHHHHHHHhCccc------ccccCCC--CCCCchHHH-cCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46799999999987654 4454434 499999999 99999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHhhhc
Q 001037 959 FYGFSHEVRSEARKVHDLFFDLLKIAF 985 (1179)
Q Consensus 959 y~~~~se~~~~A~~l~~~f~~~~~~~~ 985 (1179)
||+++ .+++.|..|.+.|...++..|
T Consensus 75 yN~~~-~~~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 75 FYKDD-DFGQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred HcCCC-HHHHHHHHHHHHHHHHHHHHh
Confidence 99999 999999999999999999887
No 69
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.64 E-value=7.9e-16 Score=150.33 Aligned_cols=120 Identities=31% Similarity=0.452 Sum_probs=109.8
Q ss_pred CHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhh
Q 001037 267 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 346 (1179)
Q Consensus 267 gKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AG 346 (1179)
.|+..+..++......+.++||||.....++.+.++|...++.+..++|+++..+|..+++.|+++. ..+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE---IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC---CcEEEEcChh
Confidence 5889999999887767899999999999999999999999999999999999999999999999644 3367788999
Q ss_pred ccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEE
Q 001037 347 GRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 389 (1179)
Q Consensus 347 geGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~Vy 389 (1179)
++|+|++.+++||+++++|++..+.|++||++|.||+..|.+|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998877653
No 70
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.63 E-value=7.1e-16 Score=144.52 Aligned_cols=97 Identities=20% Similarity=0.365 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhh
Q 001037 879 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 958 (1179)
Q Consensus 879 ~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~ 958 (1179)
...|..++++|.... +.++..|..+|.+..+|+||.+ |.+||||.+|.+||+++.|.++.+|..||.+|+.||+.
T Consensus 2 ~~~~~~i~~~l~~~~----~~~~~~F~~~~~~~~~~~Y~~~-i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 76 (99)
T cd04369 2 KKKLRSLLDALKKLK----RDLSEPFLEPVDPKEAPDYYEV-IKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKT 76 (99)
T ss_pred HHHHHHHHHHHHhhc----ccccHHHhcCCChhcCCCHHHH-HhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 468999999999887 8999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHH
Q 001037 959 FYGFSHEVRSEARKVHDLFFDL 980 (1179)
Q Consensus 959 y~~~~se~~~~A~~l~~~f~~~ 980 (1179)
||+.+|.+++.|..|..+|...
T Consensus 77 ~n~~~~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 77 YNGPGSPIYKDAKKLEKLFEKL 98 (99)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999865
No 71
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.63 E-value=5.5e-16 Score=151.63 Aligned_cols=95 Identities=14% Similarity=0.256 Sum_probs=87.8
Q ss_pred HHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhhhcCC
Q 001037 883 KNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGF 962 (1179)
Q Consensus 883 ~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~y~~~ 962 (1179)
..|+++|... ..+..|+.+|.+.++|+||++ |.+||||.+|++||++++|.++.+|..||.||+.||+.||+.
T Consensus 6 ~~ii~~l~~~------~~s~~F~~pv~~~~~p~Y~~~-I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~ 78 (112)
T cd05511 6 DEIVNELKNL------PDSWPFHTPVNKKKVPDYYKI-IKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGP 78 (112)
T ss_pred HHHHHHHHhC------CCchhhcCCCChhhcccHHHH-hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 3456666554 578899999999999999999 999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHhhh
Q 001037 963 SHEVRSEARKVHDLFFDLLKIA 984 (1179)
Q Consensus 963 ~se~~~~A~~l~~~f~~~~~~~ 984 (1179)
+|.++++|..|.++|.+.|+..
T Consensus 79 ~s~i~~~A~~l~~~~~~~~~~~ 100 (112)
T cd05511 79 DSVYTKKAKEMLELAEELLAER 100 (112)
T ss_pred CCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998764
No 72
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.63 E-value=6.8e-16 Score=147.68 Aligned_cols=96 Identities=13% Similarity=0.234 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhh
Q 001037 878 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 957 (1179)
Q Consensus 878 ~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~ 957 (1179)
++.-+..++++++ |..+..|..++.+.+.||||.+ |++||||.+|++||++++|.++++|..||.||+.||+
T Consensus 4 l~~~L~~~~~~~~-------~~~s~~F~~PV~~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~ 75 (99)
T cd05508 4 LSKLLKFALERMK-------QPGAEPFLKPVDLEQFPDYAQY-VFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAI 75 (99)
T ss_pred HHHHHHHHHHHHh-------CcCcchhcCCCChhhCCCHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 4444555555554 4569999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHH
Q 001037 958 QFYGFSHEVRSEARKVHDLFFDLL 981 (1179)
Q Consensus 958 ~y~~~~se~~~~A~~l~~~f~~~~ 981 (1179)
.||+++|.++..|..|.++|...|
T Consensus 76 ~YN~~~s~i~~~A~~l~~~~~~e~ 99 (99)
T cd05508 76 IYNGGDHKLTQAAKAIVKICEQEM 99 (99)
T ss_pred HHCCCCCHHHHHHHHHHHHHHhhC
Confidence 999999999999999999998764
No 73
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.63 E-value=1e-15 Score=149.67 Aligned_cols=103 Identities=17% Similarity=0.275 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhh
Q 001037 878 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 957 (1179)
Q Consensus 878 ~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~ 957 (1179)
+..-|..++++|.+. ..+-.|+.++...+.||||++ |.+||||.+|.+||++++|.++.+|..||.||++||+
T Consensus 4 lr~~L~~il~~l~~~------~~~~~F~~pv~~~~~pdY~~v-I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~ 76 (112)
T cd05528 4 LRLFLRDVLKRLASD------KRFNAFTKPVDEEEVPDYYEI-IKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNAL 76 (112)
T ss_pred HHHHHHHHHHHHHhC------CCchhhcCCCCccccCcHHHH-HcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHH
Confidence 344568888888875 456789999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCC----hHHHHHHHHHHHHHHHHHhhhcCC
Q 001037 958 QFYGFS----HEVRSEARKVHDLFFDLLKIAFPD 987 (1179)
Q Consensus 958 ~y~~~~----se~~~~A~~l~~~f~~~~~~~~~~ 987 (1179)
.||+++ |.++.+|..|+++|...+...+|-
T Consensus 77 ~yN~~~s~~~s~i~~~A~~L~~~~~~~~~~~~~~ 110 (112)
T cd05528 77 EYNPDRDPADKLIRSRACELRDEVHAMIEAELDP 110 (112)
T ss_pred HHCCCCCccccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999995 699999999999999999998884
No 74
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.63 E-value=6.8e-16 Score=147.57 Aligned_cols=95 Identities=17% Similarity=0.314 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHhhhccCCchhHhhhhhcc--cccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhh
Q 001037 879 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWK--RIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 956 (1179)
Q Consensus 879 ~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~--r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na 956 (1179)
++.|..|+++|..+. .+-.|..++. +.++|+||++ |.+||||.+|+.||+++.|.++.+|..||.+|+.||
T Consensus 2 ~~~c~~il~~l~~~~------~~~~F~~pv~~~~~~~p~Y~~~-I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na 74 (99)
T cd05506 2 MKQCGTLLRKLMKHK------WGWVFNAPVDVVALGLPDYFDI-IKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANA 74 (99)
T ss_pred HHHHHHHHHHHHhCC------CCccccCCCCccccCCCCHHHH-HcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 689999999999754 4678888754 5589999999 999999999999999999999999999999999999
Q ss_pred hhhcCCChHHHHHHHHHHHHHHHH
Q 001037 957 MQFYGFSHEVRSEARKVHDLFFDL 980 (1179)
Q Consensus 957 ~~y~~~~se~~~~A~~l~~~f~~~ 980 (1179)
+.||+.+|.+++.|..|++.|..+
T Consensus 75 ~~yn~~~s~i~~~a~~l~~~fe~~ 98 (99)
T cd05506 75 MRYNPPGNDVHTMAKELLKIFETR 98 (99)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999753
No 75
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.62 E-value=8.1e-16 Score=146.98 Aligned_cols=91 Identities=10% Similarity=0.264 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhh
Q 001037 879 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 958 (1179)
Q Consensus 879 ~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~ 958 (1179)
...|..|+++|.. +..+..|..++.+.+.||||++ |.+||||.+|.+||++++|.++.+|..||.||+.||+.
T Consensus 3 ~~~l~~il~~l~~------~~~~~~F~~pVd~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 75 (98)
T cd05512 3 EVLLRKTLDQLQE------KDTAEIFSEPVDLSEVPDYLDH-IKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLA 75 (98)
T ss_pred HHHHHHHHHHHHh------CCCchhhcCCCCccccCCHHHH-hcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3467778887776 7788999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHH
Q 001037 959 FYGFSHEVRSEARKVHDL 976 (1179)
Q Consensus 959 y~~~~se~~~~A~~l~~~ 976 (1179)
||+++|.+|++|.+|++.
T Consensus 76 yN~~~s~~~~~A~~l~~~ 93 (98)
T cd05512 76 YNAKDTIFYRAAVRLRDQ 93 (98)
T ss_pred HCCCCCHHHHHHHHHHHh
Confidence 999999999999999874
No 76
>PTZ00424 helicase 45; Provisional
Probab=99.62 E-value=2.3e-14 Score=167.88 Aligned_cols=106 Identities=22% Similarity=0.387 Sum_probs=94.8
Q ss_pred CCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecC
Q 001037 283 GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD 362 (1179)
Q Consensus 283 g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D 362 (1179)
..++||||.....++.+...|...++.+..++|+++.++|..+++.|++ +.++ +|++|.++++|||++.+++||+||
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~--g~~~-vLvaT~~l~~GiDip~v~~VI~~~ 343 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRS--GSTR-VLITTDLLARGIDVQQVSLVINYD 343 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHc--CCCC-EEEEcccccCCcCcccCCEEEEEC
Confidence 4679999999999999999999999999999999999999999999995 4455 578889999999999999999999
Q ss_pred CCCCcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 363 PDPNPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 363 ~pWNP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
+|.++..+.|++||++|.|..-.+ +.|++
T Consensus 344 ~p~s~~~y~qr~GRagR~g~~G~~--i~l~~ 372 (401)
T PTZ00424 344 LPASPENYIHRIGRSGRFGRKGVA--INFVT 372 (401)
T ss_pred CCCCHHHEeecccccccCCCCceE--EEEEc
Confidence 999999999999999999976544 44443
No 77
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.61 E-value=9.4e-16 Score=146.45 Aligned_cols=91 Identities=19% Similarity=0.274 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhh
Q 001037 879 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 958 (1179)
Q Consensus 879 ~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~ 958 (1179)
+..|.+|+++|..... +..|+..+...+.||||++ |++||||.+|.+||++.+|.++.+|..||.||+.||+.
T Consensus 3 ~~~l~~il~~l~~~~~------~~~F~~PV~~~~~pdY~~v-Ik~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 75 (98)
T cd05513 3 QKALEQLIRQLQRKDP------HGFFAFPVTDFIAPGYSSI-IKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMK 75 (98)
T ss_pred HHHHHHHHHHHHcCCc------cccccCcCCccccccHHHH-HcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5678899999886543 5689999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHH
Q 001037 959 FYGFSHEVRSEARKVHDL 976 (1179)
Q Consensus 959 y~~~~se~~~~A~~l~~~ 976 (1179)
||+++|.+|++|..|...
T Consensus 76 yN~~~s~~~~~A~~L~~~ 93 (98)
T cd05513 76 YNKPDTIYYKAAKKLLHS 93 (98)
T ss_pred HCCCCCHHHHHHHHHHHh
Confidence 999999999999999653
No 78
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.61 E-value=5.8e-14 Score=174.29 Aligned_cols=107 Identities=16% Similarity=0.259 Sum_probs=85.1
Q ss_pred hcCCeEEEeehhH--------HHHHHHHHHHHH--cCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCC
Q 001037 281 RTGHRVLLFSTMT--------KLLDILEEYLQW--RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGL 350 (1179)
Q Consensus 281 ~~g~KVLIFSqft--------~~ldiLe~~L~~--~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGL 350 (1179)
..+++++|||... ..+..+.+.|.. .++.+..++|.++.++|..+++.|.++ .+. +|++|.+.++|+
T Consensus 446 ~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g--~~~-ILVaT~vie~Gv 522 (630)
T TIGR00643 446 AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREG--EVD-ILVATTVIEVGV 522 (630)
T ss_pred HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcC--CCC-EEEECceeecCc
Confidence 4567777777543 233445555553 478899999999999999999999954 444 578889999999
Q ss_pred CCcccceeeecCCCC-CcchHHHHhhcccccCCcceEEEEE
Q 001037 351 NLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVKVIY 390 (1179)
Q Consensus 351 NLQ~AdtVIi~D~pW-NP~~~eQAiGRIhRIGQkkeV~Vyr 390 (1179)
|++.++.||+++++. +...+.|+.||++|-|....|.+++
T Consensus 523 DiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 523 DVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred ccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 999999999999985 6788999999999999877665443
No 79
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.58 E-value=8.8e-14 Score=173.96 Aligned_cols=107 Identities=13% Similarity=0.190 Sum_probs=86.1
Q ss_pred hhcCCeEEEeehhHH--------HHHHHHHHHHHc--CCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccC
Q 001037 280 QRTGHRVLLFSTMTK--------LLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRG 349 (1179)
Q Consensus 280 ~~~g~KVLIFSqft~--------~ldiLe~~L~~~--Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeG 349 (1179)
...+++++|||.... .+..+.+.|... ++.+..++|.++.++|..++++|.++ .+. +|++|.+.++|
T Consensus 468 ~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g--~~~-ILVaT~vie~G 544 (681)
T PRK10917 468 IAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAG--EID-ILVATTVIEVG 544 (681)
T ss_pred HHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcC--CCC-EEEECcceeeC
Confidence 356788888886432 234455566554 57899999999999999999999954 444 57888999999
Q ss_pred CCCcccceeeecCCCC-CcchHHHHhhcccccCCcceEEEE
Q 001037 350 LNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVKVI 389 (1179)
Q Consensus 350 LNLQ~AdtVIi~D~pW-NP~~~eQAiGRIhRIGQkkeV~Vy 389 (1179)
+|++.+++||+++++. ....+.|+.||++|-|.+..|.++
T Consensus 545 iDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill 585 (681)
T PRK10917 545 VDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLL 585 (681)
T ss_pred cccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEE
Confidence 9999999999999985 578899999999999987666444
No 80
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.58 E-value=6.1e-14 Score=177.41 Aligned_cols=106 Identities=17% Similarity=0.121 Sum_probs=96.9
Q ss_pred CCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecC
Q 001037 283 GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD 362 (1179)
Q Consensus 283 g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D 362 (1179)
+...||||..+...+.|...|...|+.+..++|+++.++|..+++.|..+ .+. +|++|.++|.|||+...+.||+|+
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~G--ei~-VLVATdAFGMGIDkPDVR~VIHyd 756 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKD--EIN-IICATVAFGMGINKPDVRFVIHHS 756 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcC--CCc-EEEEechhhcCCCccCCcEEEEcC
Confidence 45689999999999999999999999999999999999999999999953 455 477889999999999999999999
Q ss_pred CCCCcchHHHHhhcccccCCcceEEEEEE
Q 001037 363 PDPNPKNEEQAVARAHRIGQKREVKVIYM 391 (1179)
Q Consensus 363 ~pWNP~~~eQAiGRIhRIGQkkeV~VyrL 391 (1179)
+|.+...|.|++||++|.|+...+..||-
T Consensus 757 lPkSiEsYyQriGRAGRDG~~g~cILlys 785 (1195)
T PLN03137 757 LPKSIEGYHQECGRAGRDGQRSSCVLYYS 785 (1195)
T ss_pred CCCCHHHHHhhhcccCCCCCCceEEEEec
Confidence 99999999999999999999888766653
No 81
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.57 E-value=5.2e-15 Score=136.42 Aligned_cols=84 Identities=19% Similarity=0.348 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhhhcC
Q 001037 882 CKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYG 961 (1179)
Q Consensus 882 c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~y~~ 961 (1179)
|.+|++.|.... ++..|..+|...+.|+||.+ |.+||||.+|++||+.+.|.++.+|..||.+|+.||+.||+
T Consensus 1 C~~il~~l~~~~------~~~~F~~~~~~~~~p~y~~~-i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~ 73 (84)
T PF00439_consen 1 CREILEELMKHP------ISSPFSKPVDPKEYPDYYEI-IKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNP 73 (84)
T ss_dssp HHHHHHHHHTST------TGGGGSSSTHTTTSTTHHHH-SSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHcCC------CchhhcCCCChhhCCCHHHH-HhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCC
Confidence 999999887654 89999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHH
Q 001037 962 FSHEVRSEARK 972 (1179)
Q Consensus 962 ~~se~~~~A~~ 972 (1179)
++|.+|++|++
T Consensus 74 ~~s~~~~~A~~ 84 (84)
T PF00439_consen 74 PDSPIYKAAEK 84 (84)
T ss_dssp TTSHHHHHHHH
T ss_pred CcCHHHHHhcC
Confidence 99999999975
No 82
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.56 E-value=1.2e-13 Score=176.06 Aligned_cols=105 Identities=17% Similarity=0.208 Sum_probs=91.9
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHc--CCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceee
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 359 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~--Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVI 359 (1179)
.+.+++|||+....++.+.+.|... ++++..++|.++.++|.+++.+|.++. +. +|++|.+.+.|||++.+++||
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk--~~-ILVaT~iie~GIDIp~v~~VI 735 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGE--FQ-VLVCTTIIETGIDIPNANTII 735 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCC--CC-EEEECChhhcccccccCCEEE
Confidence 4779999999999999999999874 789999999999999999999999644 44 588889999999999999999
Q ss_pred ecCCC-CCcchHHHHhhcccccCCcceEEEE
Q 001037 360 IYDPD-PNPKNEEQAVARAHRIGQKREVKVI 389 (1179)
Q Consensus 360 i~D~p-WNP~~~eQAiGRIhRIGQkkeV~Vy 389 (1179)
+++.+ +....+.|+.||++|-|.+..|.++
T Consensus 736 i~~a~~~gls~l~Qr~GRvGR~g~~g~aill 766 (926)
T TIGR00580 736 IERADKFGLAQLYQLRGRVGRSKKKAYAYLL 766 (926)
T ss_pred EecCCCCCHHHHHHHhcCCCCCCCCeEEEEE
Confidence 99986 4667899999999999987665433
No 83
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.4e-13 Score=166.88 Aligned_cols=113 Identities=27% Similarity=0.436 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhc
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 347 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGg 347 (1179)
|+.+|..+|.... ..++||||.....++.|...|...|+.+..|+|++++++|...++.|++ +.+. +|++|++++
T Consensus 260 k~~~L~~ll~~~~--~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~--g~~~-vLVaTDvaa 334 (513)
T COG0513 260 KLELLLKLLKDED--EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKD--GELR-VLVATDVAA 334 (513)
T ss_pred HHHHHHHHHhcCC--CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHc--CCCC-EEEEechhh
Confidence 6667777776533 2379999999999999999999999999999999999999999999994 4555 477889999
Q ss_pred cCCCCcccceeeecCCCCCcchHHHHhhcccccCCcce
Q 001037 348 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 385 (1179)
Q Consensus 348 eGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkke 385 (1179)
+||++...++||+||+|.++..|.+|+||++|.|.+-.
T Consensus 335 RGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ 372 (513)
T COG0513 335 RGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGV 372 (513)
T ss_pred ccCCccccceeEEccCCCCHHHheeccCccccCCCCCe
Confidence 99999999999999999999999999999999996554
No 84
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.55 E-value=1.4e-13 Score=155.15 Aligned_cols=119 Identities=25% Similarity=0.329 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhc
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 347 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGg 347 (1179)
|-..|..||.++ .|..+||||....+...+.-.|...|+....++|.|++..|..+++.|+++.-+ +|++|++|+
T Consensus 287 K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~---iLv~TDVaS 361 (476)
T KOG0330|consen 287 KDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARS---ILVCTDVAS 361 (476)
T ss_pred cchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCc---EEEecchhc
Confidence 556788888865 468999999999999999999999999999999999999999999999964433 688899999
Q ss_pred cCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 348 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 348 eGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
.|||.+.+|.||+||.|-+-..|+.|.||+.|.|. .-.++.|++
T Consensus 362 RGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGr--sG~~ItlVt 405 (476)
T KOG0330|consen 362 RGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGR--SGKAITLVT 405 (476)
T ss_pred ccCCCCCceEEEecCCCCcHHHHHHHcccccccCC--CcceEEEEe
Confidence 99999999999999999999999999999999993 444566665
No 85
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.55 E-value=1.9e-13 Score=177.77 Aligned_cols=105 Identities=17% Similarity=0.159 Sum_probs=91.9
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHc--CCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceee
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 359 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~--Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVI 359 (1179)
.+.+|+|||+.+..++.+.+.|... ++.+..++|.++.++|.+++.+|.++ ++. +|++|.+++.|||++.+++||
T Consensus 808 r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~G--k~~-VLVaTdIierGIDIP~v~~VI 884 (1147)
T PRK10689 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ--RFN-VLVCTTIIETGIDIPTANTII 884 (1147)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhc--CCC-EEEECchhhcccccccCCEEE
Confidence 4678999999999999999999877 78999999999999999999999954 444 588889999999999999999
Q ss_pred ecCCC-CCcchHHHHhhcccccCCcceEEEE
Q 001037 360 IYDPD-PNPKNEEQAVARAHRIGQKREVKVI 389 (1179)
Q Consensus 360 i~D~p-WNP~~~eQAiGRIhRIGQkkeV~Vy 389 (1179)
+.+++ |+..++.|+.||++|.|.+..+.++
T Consensus 885 i~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll 915 (1147)
T PRK10689 885 IERADHFGLAQLHQLRGRVGRSHHQAYAWLL 915 (1147)
T ss_pred EecCCCCCHHHHHHHhhccCCCCCceEEEEE
Confidence 87764 6778899999999999988766543
No 86
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.53 E-value=1.1e-14 Score=170.10 Aligned_cols=110 Identities=17% Similarity=0.288 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhh
Q 001037 877 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 956 (1179)
Q Consensus 877 ~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na 956 (1179)
.+-+.|+.++-.+....+.+|+.+.-+|+.+|+++..|+||.+ |..||||.+|+.+|+.+.|.++.+|+.||.|||+||
T Consensus 142 ~~~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~~PdYy~i-Ik~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~ 220 (371)
T COG5076 142 LLYADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKREYPDYYEI-IKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNC 220 (371)
T ss_pred hHHHHHHHHHHHHHHhhcccccccccccccCCccccCCChhee-ecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 4567899999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred hhhcCCChHHHHHHHHHHHHHHHHHhhhcCC
Q 001037 957 MQFYGFSHEVRSEARKVHDLFFDLLKIAFPD 987 (1179)
Q Consensus 957 ~~y~~~~se~~~~A~~l~~~f~~~~~~~~~~ 987 (1179)
+.||.++|.+|.+|..|.+.|...++...+.
T Consensus 221 ~~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~ 251 (371)
T COG5076 221 KLYNGPDSSVYVDAKELEKYFLKLIEEIPEE 251 (371)
T ss_pred hhccCCCcchhhhhHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999955443
No 87
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.52 E-value=5.1e-13 Score=171.13 Aligned_cols=113 Identities=16% Similarity=0.147 Sum_probs=94.2
Q ss_pred HHHHHhhcCCeEEEeehhHHHHHHHHHHHHHc------CCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhcc
Q 001037 275 ILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348 (1179)
Q Consensus 275 IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~------Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGge 348 (1179)
.|..+...+.++||||+....++.+...|... +..+..++|+++.++|..+++.|++ +.++ +|++|.++++
T Consensus 276 ~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~--G~i~-vLVaTs~Le~ 352 (876)
T PRK13767 276 TLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKR--GELK-VVVSSTSLEL 352 (876)
T ss_pred HHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHc--CCCe-EEEECChHHh
Confidence 34444456789999999999999999988763 4678899999999999999999995 4455 5778899999
Q ss_pred CCCCcccceeeecCCCCCcchHHHHhhccccc-CCcceEEEEE
Q 001037 349 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRI-GQKREVKVIY 390 (1179)
Q Consensus 349 GLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRI-GQkkeV~Vyr 390 (1179)
|||+..++.||+|++|.+...+.||+||++|- |....-.++.
T Consensus 353 GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 353 GIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred cCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 99999999999999999999999999999975 4544444443
No 88
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.48 E-value=8.8e-14 Score=135.12 Aligned_cols=93 Identities=16% Similarity=0.169 Sum_probs=84.0
Q ss_pred HHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhhhcCCChHHH
Q 001037 888 KLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVR 967 (1179)
Q Consensus 888 ~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~y~~~~se~~ 967 (1179)
.++.-+..+.--.++.|.+-|++...|+||.+ |++||||.+|++||+.++|.+++||.+||+||++||+.||+++|.++
T Consensus 11 ~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~s~~~ 89 (109)
T cd05492 11 RMKSWLPPDTTNRAIVLNKRGKATKLPKRRRL-IHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADSEQY 89 (109)
T ss_pred HHHhcCcccccccccccccCchhccCCCHHHH-hCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 44444456777789999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 001037 968 SEARKVHDLFFDLL 981 (1179)
Q Consensus 968 ~~A~~l~~~f~~~~ 981 (1179)
..|+.|.......|
T Consensus 90 ~~A~~l~~d~~~el 103 (109)
T cd05492 90 DAARWLYRDTCHDL 103 (109)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999987665544
No 89
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.48 E-value=5.8e-14 Score=127.18 Aligned_cols=78 Identities=32% Similarity=0.531 Sum_probs=72.3
Q ss_pred HHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhccccc
Q 001037 301 EYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 380 (1179)
Q Consensus 301 ~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRI 380 (1179)
.+|+..++.+..++|.++..+|..+++.|+.+.. . +|++|.++++|+|++.+++||+++++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~--~-vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEI--R-VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS--S-EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCc--e-EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 3688899999999999999999999999996444 3 677889999999999999999999999999999999999998
Q ss_pred C
Q 001037 381 G 381 (1179)
Q Consensus 381 G 381 (1179)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
No 90
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.47 E-value=3.1e-12 Score=161.24 Aligned_cols=106 Identities=19% Similarity=0.147 Sum_probs=93.1
Q ss_pred HHhhcCCeEEEeehhHHHHHHHHHHHHHc--------CCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccC
Q 001037 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWR--------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRG 349 (1179)
Q Consensus 278 el~~~g~KVLIFSqft~~ldiLe~~L~~~--------Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeG 349 (1179)
.+...+.++||||+.+..++.|..+|... +..+..++|+++.++|.+++++|++ +.++ +|++|+++++|
T Consensus 266 ~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~--G~i~-vLVaTd~lerG 342 (742)
T TIGR03817 266 DLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD--GELL-GVATTNALELG 342 (742)
T ss_pred HHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc--CCce-EEEECchHhcc
Confidence 33345789999999999999999988753 5677889999999999999999995 4555 58899999999
Q ss_pred CCCcccceeeecCCCCCcchHHHHhhcccccCCcceE
Q 001037 350 LNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 386 (1179)
Q Consensus 350 LNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV 386 (1179)
||+...++||+|+.|-+...+.||+||++|.|+...+
T Consensus 343 IDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~a 379 (742)
T TIGR03817 343 VDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALV 379 (742)
T ss_pred CCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEE
Confidence 9999999999999999999999999999999987553
No 91
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.46 E-value=3.3e-12 Score=147.77 Aligned_cols=110 Identities=16% Similarity=0.251 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCC--eEEEEcCCCCHHHHHHH----HHHhccCCCCccEEee
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL--VYRRIDGTTSLEDRESA----IVDFNSHDSDCFIFLL 341 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi--~~~rIdGsts~eeRe~i----I~~Fn~~ds~i~VLLl 341 (1179)
|...+..++..+ ..+.++||||+....++.+...|...+. .+..++|.++..+|..+ ++.|.+ +..+ +|+
T Consensus 208 ~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~--~~~~-ilv 283 (358)
T TIGR01587 208 EISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK--NEKF-VIV 283 (358)
T ss_pred CHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC--CCCe-EEE
Confidence 344455555332 4578999999999999999999988776 48999999999999764 889985 3334 588
Q ss_pred ehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcc
Q 001037 342 SIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 384 (1179)
Q Consensus 342 ST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkk 384 (1179)
+|++++.|||+. ++.||+++.+ +..+.||+||++|.|.+.
T Consensus 284 aT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~ 323 (358)
T TIGR01587 284 ATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKN 323 (358)
T ss_pred ECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCC
Confidence 899999999994 8999988766 789999999999999764
No 92
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=2.1e-12 Score=140.42 Aligned_cols=119 Identities=23% Similarity=0.323 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhc
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 347 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGg 347 (1179)
|+..|.++...|- =...||||+.....++|.+.+...++.+..++|.+..++|.+++++|+.+.+. +|++|++-+
T Consensus 253 KfdtLcdLYd~Lt--ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~Sr---vLitTDVwa 327 (400)
T KOG0328|consen 253 KFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSR---VLITTDVWA 327 (400)
T ss_pred hHhHHHHHhhhhe--hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCce---EEEEechhh
Confidence 5566666655542 35789999999999999999999999999999999999999999999976665 688999999
Q ss_pred cCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 348 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 348 eGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
.|+++|..+.||+||+|-|+..|+.||||.+|.|.+.-+ +.|+.
T Consensus 328 RGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGva--inFVk 371 (400)
T KOG0328|consen 328 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVA--INFVK 371 (400)
T ss_pred ccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceE--EEEec
Confidence 999999999999999999999999999999999987543 45543
No 93
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=99.44 E-value=1.1e-12 Score=162.24 Aligned_cols=120 Identities=15% Similarity=0.277 Sum_probs=108.0
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcc--cccCCCccccccCCccchHHHHHHhcccCcccHHHH
Q 001037 868 SNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWK--RIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMEL 945 (1179)
Q Consensus 868 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~--r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~ 945 (1179)
....+++.-.+-+.|..||..|..++.. -.|...+. --.+||||+| |++||||.+|..||..++|.++.||
T Consensus 213 ~~~~~~~~~~~lk~C~~iLk~l~~~k~a------wpF~~PVD~v~LgLpDY~~I-IK~PMDLgTIK~kL~~~~Y~~~~eF 285 (640)
T KOG1474|consen 213 AKPKSKLTVELLKQCLSILKRLMKHKHA------WPFNEPVDVVKLGLPDYHDI-IKHPMDLGTIKKKLEKGEYKSAEEF 285 (640)
T ss_pred ccccccccHHHHHHHHHHHHHHHhccCC------CCcCCCcCHHhcCCcchhhh-cCCCccHHHHHhhhcccccCCHHHH
Confidence 3446788899999999999999999876 67777755 4578999999 9999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHhhhcCCCchHHhh
Q 001037 946 VSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREAR 994 (1179)
Q Consensus 946 ~~d~~lm~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~~~~~~~~~~~ 994 (1179)
++||.|||+|||.||++++.||.-|.+|.++|-.+++.+++...-....
T Consensus 286 ~~DVRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~ 334 (640)
T KOG1474|consen 286 AADVRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESA 334 (640)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 9999999999999999999999999999999999999988876554433
No 94
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.38 E-value=2.2e-11 Score=158.35 Aligned_cols=107 Identities=16% Similarity=0.233 Sum_probs=88.8
Q ss_pred CCeEEEeehhHHHHHHHHHHHHHc------CC---eEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCc
Q 001037 283 GHRVLLFSTMTKLLDILEEYLQWR------QL---VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ 353 (1179)
Q Consensus 283 g~KVLIFSqft~~ldiLe~~L~~~------Gi---~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ 353 (1179)
+.|+||||.....++.+.+.|... ++ .+..++|+++ ++..++++|.+ +....+|++++.+++|+|.+
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~--~~~p~IlVsvdmL~TG~DvP 773 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKN--ERLPNIVVTVDLLTTGIDVP 773 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhC--CCCCeEEEEecccccCCCcc
Confidence 379999999999999888877642 22 3567899885 67889999985 34446788999999999999
Q ss_pred ccceeeecCCCCCcchHHHHhhcccccCC---cceEEEEEEEe
Q 001037 354 SADTVIIYDPDPNPKNEEQAVARAHRIGQ---KREVKVIYMEA 393 (1179)
Q Consensus 354 ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQ---kkeV~VyrLva 393 (1179)
.+++||++.++-++..+.|++||+.|+.- |....|+.++-
T Consensus 774 ~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~vg 816 (1123)
T PRK11448 774 SICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAVD 816 (1123)
T ss_pred cccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehHH
Confidence 99999999999999999999999999854 55677787755
No 95
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.38 E-value=1.8e-11 Score=142.77 Aligned_cols=120 Identities=20% Similarity=0.223 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHc--CCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehh
Q 001037 267 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 344 (1179)
Q Consensus 267 gKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~--Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~ 344 (1179)
.|+..|..+|.... ..|.|||...-..+.++.+.|... |++.+.++|.+++..|..+..+|.. .-.++|++|+
T Consensus 299 ~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~---~~~~vLF~TD 373 (758)
T KOG0343|consen 299 DKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVR---KRAVVLFCTD 373 (758)
T ss_pred hHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHH---hcceEEEeeh
Confidence 47777777777643 568999998888999999988765 9999999999999999999999985 2346899999
Q ss_pred hhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEE
Q 001037 345 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 391 (1179)
Q Consensus 345 AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrL 391 (1179)
+++.||+++..|-||-+|.|-+-..|+.|.||..|++-.-+..++..
T Consensus 374 v~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~ 420 (758)
T KOG0343|consen 374 VAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLT 420 (758)
T ss_pred hhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEc
Confidence 99999999999999999999999999999999999998888755543
No 96
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.38 E-value=1.9e-11 Score=160.68 Aligned_cols=96 Identities=18% Similarity=0.202 Sum_probs=83.6
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHcC---------------------------------CeEEEEcCCCCHHHHHHHHHH
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWRQ---------------------------------LVYRRIDGTTSLEDRESAIVD 328 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~G---------------------------------i~~~rIdGsts~eeRe~iI~~ 328 (1179)
.+.++||||+.+..++.+...|.... +.+..++|+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 46789999999999999998887531 124567899999999999999
Q ss_pred hccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhccccc
Q 001037 329 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 380 (1179)
Q Consensus 329 Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRI 380 (1179)
|++ +.++ +|++|.+++.|||+..++.||+|+.|.+...+.||+||++|.
T Consensus 323 fK~--G~Lr-vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKS--GELR-CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHh--CCce-EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 995 4455 578889999999999999999999999999999999999885
No 97
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.37 E-value=9.8e-11 Score=146.52 Aligned_cols=131 Identities=13% Similarity=0.140 Sum_probs=110.8
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeeh
Q 001037 264 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 343 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST 343 (1179)
....|+.+|...+......+..|||||......+.|...|...|+++..++|.+...++..+...|+. +. ++++|
T Consensus 409 ~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~--g~---VlIAT 483 (790)
T PRK09200 409 TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK--GA---VTVAT 483 (790)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC--Ce---EEEEc
Confidence 44568889999888877789999999999999999999999999999999999988887777777663 22 68899
Q ss_pred hhhccCCCC---cccc-----eeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeehhhhhhh
Q 001037 344 RAAGRGLNL---QSAD-----TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSH 401 (1179)
Q Consensus 344 ~AGgeGLNL---Q~Ad-----tVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~I~~~ 401 (1179)
..+|.|+|+ ..+. +||++|+|-|+..+.|+.||++|.|..-.+. .+++.++.++..
T Consensus 484 dmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~--~~is~eD~l~~~ 547 (790)
T PRK09200 484 NMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQ--FFISLEDDLLKR 547 (790)
T ss_pred cchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEE--EEEcchHHHHHh
Confidence 999999999 4676 9999999999999999999999999987653 334556666643
No 98
>PRK02362 ski2-like helicase; Provisional
Probab=99.36 E-value=4.6e-11 Score=151.19 Aligned_cols=109 Identities=19% Similarity=0.133 Sum_probs=85.8
Q ss_pred hcCCeEEEeehhHHHHHHHHHHHHHc------------------------------------CCeEEEEcCCCCHHHHHH
Q 001037 281 RTGHRVLLFSTMTKLLDILEEYLQWR------------------------------------QLVYRRIDGTTSLEDRES 324 (1179)
Q Consensus 281 ~~g~KVLIFSqft~~ldiLe~~L~~~------------------------------------Gi~~~rIdGsts~eeRe~ 324 (1179)
..+.++||||..+.....++..|... ...+..++|+++.++|..
T Consensus 241 ~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ 320 (737)
T PRK02362 241 EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHREL 320 (737)
T ss_pred HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHH
Confidence 46788999998887776666655432 135778899999999999
Q ss_pred HHHHhccCCCCccEEeeehhhhccCCCCcccceeee----cC-----CCCCcchHHHHhhcccccCCcceEEEEEEE
Q 001037 325 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD-----PDPNPKNEEQAVARAHRIGQKREVKVIYME 392 (1179)
Q Consensus 325 iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi----~D-----~pWNP~~~eQAiGRIhRIGQkkeV~VyrLv 392 (1179)
+.+.|++ +.++ +|++|.+++.|+||+..+.||. || .|.+...+.|++||++|.|....-.++.++
T Consensus 321 ve~~Fr~--G~i~-VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~ 394 (737)
T PRK02362 321 VEDAFRD--RLIK-VISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLA 394 (737)
T ss_pred HHHHHHc--CCCe-EEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEe
Confidence 9999995 4555 4888899999999999887776 77 577889999999999999987553444443
No 99
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.35 E-value=2.1e-12 Score=115.87 Aligned_cols=81 Identities=36% Similarity=0.461 Sum_probs=74.5
Q ss_pred HHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcc
Q 001037 298 ILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA 377 (1179)
Q Consensus 298 iLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRI 377 (1179)
.|..+|...++.+..++|.++.++|..++..|+.+.. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4677888889999999999999999999999996443 5788899999999999999999999999999999999999
Q ss_pred cccC
Q 001037 378 HRIG 381 (1179)
Q Consensus 378 hRIG 381 (1179)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
No 100
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.34 E-value=4.6e-12 Score=139.67 Aligned_cols=134 Identities=22% Similarity=0.322 Sum_probs=114.8
Q ss_pred cCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhh
Q 001037 266 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 345 (1179)
Q Consensus 266 SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~A 345 (1179)
+-|+.+|..++.++.- ...||||+.+..++.|+......|+.+..++..|.++.|.....+|+ ++.|+. |++|+.
T Consensus 307 ~qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr--~G~crn-LVctDL 381 (459)
T KOG0326|consen 307 RQKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFR--NGKCRN-LVCTDL 381 (459)
T ss_pred hhhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhh--ccccce-eeehhh
Confidence 4577788888877753 47899999999999999999999999999999999999999999999 567886 666799
Q ss_pred hccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeehhhhhhhhhhhh
Q 001037 346 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDE 406 (1179)
Q Consensus 346 GgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~I~~~q~ek~ 406 (1179)
.-.|+++|+.|.||+||.|-|+..|..|+||.+|.|..-- -+.|++.|++..-...+.+
T Consensus 382 ~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGl--AInLityedrf~L~~IE~e 440 (459)
T KOG0326|consen 382 FTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGL--AINLITYEDRFNLYRIEQE 440 (459)
T ss_pred hhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcce--EEEEEehhhhhhHHHHHHH
Confidence 9999999999999999999999999999999999997653 3667777777654444433
No 101
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.34 E-value=2.9e-11 Score=146.18 Aligned_cols=234 Identities=19% Similarity=0.230 Sum_probs=168.7
Q ss_pred ChhHHhHHHhhHhhhCCCCEEEEcHHHHHhc--hhhhccCCccEEEEcCCccCC-------ChhhHHHHHHHhhcCCcEE
Q 001037 23 AKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMK-------DRESVLARDLDRYRCQRRL 93 (1179)
Q Consensus 23 ~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d--~~~L~ki~wdlVIIDEAHriK-------N~~Sk~tkaL~~Lka~~RL 93 (1179)
+..++..+.. ....+.++++..+.|.+... .+.|...+..+++|||||-+- .....+......+...-++
T Consensus 92 ~~~e~~~v~~-~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~ 170 (590)
T COG0514 92 SREERQQVLN-QLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVL 170 (590)
T ss_pred CHHHHHHHHH-HHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEE
Confidence 3455555543 35567799999999999876 566778899999999999873 3334455555555666799
Q ss_pred EEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCCCCchhHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q 001037 94 LLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVE 173 (1179)
Q Consensus 94 LLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~ee~~~ii~rL~kvL~pf~LRRtKk 173 (1179)
+||||=-+---.|+...|.+-.+.+|.. .|..|.
T Consensus 171 AlTATA~~~v~~DI~~~L~l~~~~~~~~------sfdRpN---------------------------------------- 204 (590)
T COG0514 171 ALTATATPRVRDDIREQLGLQDANIFRG------SFDRPN---------------------------------------- 204 (590)
T ss_pred EEeCCCChHHHHHHHHHhcCCCcceEEe------cCCCch----------------------------------------
Confidence 9999976666667776666554433211 111100
Q ss_pred hhhcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCc
Q 001037 174 DVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPY 253 (1179)
Q Consensus 174 DV~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL~~~l~~LRkicnhP~L~~~~ 253 (1179)
. .|. +...
T Consensus 205 --------i---------------~~~-v~~~------------------------------------------------ 212 (590)
T COG0514 205 --------L---------------ALK-VVEK------------------------------------------------ 212 (590)
T ss_pred --------h---------------hhh-hhhc------------------------------------------------
Confidence 0 000 0000
Q ss_pred ccccchhhhhcccCHHHHHHHHHHH-HhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccC
Q 001037 254 FSDLSKDFLVKSCGKLWILDRILIK-LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332 (1179)
Q Consensus 254 l~~l~~~~lv~~SgKl~~L~~IL~e-l~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ 332 (1179)
..++...+ +|.. ....+.-.||||..+...+.+..+|...|+....++|++..++|+.+-++|..+
T Consensus 213 -----------~~~~~q~~--fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~ 279 (590)
T COG0514 213 -----------GEPSDQLA--FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLND 279 (590)
T ss_pred -----------ccHHHHHH--HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcC
Confidence 00000011 1111 122344589999999999999999999999999999999999999999999964
Q ss_pred CCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEE
Q 001037 333 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 391 (1179)
Q Consensus 333 ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrL 391 (1179)
+.. ++++|.|.|.|||-++...|||||+|-+...|.|=+|||+|-|....+..++-
T Consensus 280 ~~~---iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~ 335 (590)
T COG0514 280 EIK---VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYS 335 (590)
T ss_pred CCc---EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeec
Confidence 444 58888999999999999999999999999999999999999999999866554
No 102
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.34 E-value=9.5e-11 Score=145.56 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=109.2
Q ss_pred hcccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeee
Q 001037 263 VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 342 (1179)
Q Consensus 263 v~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlS 342 (1179)
.....|+.++...+.++...+..|||||......+.|...|...|+++..++|.+...++..+...|+. +. ++++
T Consensus 404 ~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~--g~---VlIA 478 (762)
T TIGR03714 404 ATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQK--GA---VTVA 478 (762)
T ss_pred ECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCC--Ce---EEEE
Confidence 344569999999998888889999999999999999999999999999999999998887777666653 22 6899
Q ss_pred hhhhccCCCCc---------ccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeehhhhhh
Q 001037 343 IRAAGRGLNLQ---------SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 400 (1179)
Q Consensus 343 T~AGgeGLNLQ---------~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~I~~ 400 (1179)
|..+|.|+++. ..++||.|+++-+... .|+.||++|.|..-.+. .+++.++.++.
T Consensus 479 TdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~--~~is~eD~l~~ 542 (762)
T TIGR03714 479 TSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQ--FFVSLEDDLIK 542 (762)
T ss_pred ccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEE--EEEccchhhhh
Confidence 99999999999 7899999999977655 99999999999887754 33455666654
No 103
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.32 E-value=5.4e-11 Score=137.94 Aligned_cols=116 Identities=24% Similarity=0.415 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhh
Q 001037 267 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 346 (1179)
Q Consensus 267 gKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AG 346 (1179)
.++.+|..+|.+.... .||+|||.......++++.|....+++..|+|..++..|-....+|.+..+. ||++|+++
T Consensus 315 ~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesg---IL~cTDVa 390 (543)
T KOG0342|consen 315 SRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESG---ILVCTDVA 390 (543)
T ss_pred chHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccc---eEEecchh
Confidence 4577888888876543 8999999999999999999999999999999999999999999999975554 78999999
Q ss_pred ccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceE
Q 001037 347 GRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 386 (1179)
Q Consensus 347 geGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV 386 (1179)
++|+|++..+-||-||+|-+|..|+.|+||..|-|-+-.-
T Consensus 391 ARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~a 430 (543)
T KOG0342|consen 391 ARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKA 430 (543)
T ss_pred hccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceE
Confidence 9999999999999999999999999999999997766554
No 104
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.30 E-value=1.1e-10 Score=134.65 Aligned_cols=121 Identities=20% Similarity=0.311 Sum_probs=103.0
Q ss_pred cCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHH--cCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeeh
Q 001037 266 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW--RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 343 (1179)
Q Consensus 266 SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~--~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST 343 (1179)
.-|+..|.++|.. ...+|+|||...-...++....|.. ..+.++.++|.++...|..+++.|.+... -+|++|
T Consensus 240 ~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~---~vl~~T 314 (567)
T KOG0345|consen 240 DEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSN---GVLFCT 314 (567)
T ss_pred HHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccC---ceEEee
Confidence 3478888888876 4568999998877777777776664 47789999999999999999999996222 378899
Q ss_pred hhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEE
Q 001037 344 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 391 (1179)
Q Consensus 344 ~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrL 391 (1179)
++++.|||++..|.||.||||-+|..+..|.||..|.|..-...|+.+
T Consensus 315 DVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~ 362 (567)
T KOG0345|consen 315 DVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLN 362 (567)
T ss_pred hhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEec
Confidence 999999999999999999999999999999999999998877656554
No 105
>PRK01172 ski2-like helicase; Provisional
Probab=99.29 E-value=2.3e-10 Score=143.54 Aligned_cols=106 Identities=21% Similarity=0.151 Sum_probs=81.3
Q ss_pred HHHHhhcCCeEEEeehhHHHHHHHHHHHHHc-------------------------CCeEEEEcCCCCHHHHHHHHHHhc
Q 001037 276 LIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-------------------------QLVYRRIDGTTSLEDRESAIVDFN 330 (1179)
Q Consensus 276 L~el~~~g~KVLIFSqft~~ldiLe~~L~~~-------------------------Gi~~~rIdGsts~eeRe~iI~~Fn 330 (1179)
+.+....+.++|||+..+...+.+...|... ...+..++|+++.++|..+.+.|+
T Consensus 229 i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~ 308 (674)
T PRK01172 229 IKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFR 308 (674)
T ss_pred HHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHH
Confidence 3333456778888888877777766666432 123667899999999999999999
Q ss_pred cCCCCccEEeeehhhhccCCCCcccceeeecCC---------CCCcchHHHHhhcccccCCcce
Q 001037 331 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP---------DPNPKNEEQAVARAHRIGQKRE 385 (1179)
Q Consensus 331 ~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~---------pWNP~~~eQAiGRIhRIGQkke 385 (1179)
+ +.++ +|++|.+++.|+|+++ .+||++|. ++++..+.|++||++|.|....
T Consensus 309 ~--g~i~-VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 368 (674)
T PRK01172 309 N--RYIK-VIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQY 368 (674)
T ss_pred c--CCCe-EEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCc
Confidence 4 4555 4888899999999996 67777764 3577788999999999997655
No 106
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.29 E-value=2.9e-10 Score=139.75 Aligned_cols=129 Identities=18% Similarity=0.242 Sum_probs=105.2
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehh
Q 001037 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 344 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~ 344 (1179)
...|+.+|.+++..+...+..|||||......+.|...|...|+++..|+|... +|+..+..|....+. |+++|.
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~---VlVATd 529 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR---ITVATN 529 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc---EEEEcc
Confidence 345889999999887777888999999999999999999999999999999865 555556666533333 688999
Q ss_pred hhccCCCCc---ccc-----eeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeehhhhhh
Q 001037 345 AAGRGLNLQ---SAD-----TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 400 (1179)
Q Consensus 345 AGgeGLNLQ---~Ad-----tVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~I~~ 400 (1179)
.+|.|+|+. .+. +||+||.|-|...+.|++||++|.|..-.+. .+++.++.++.
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~--~~is~eD~l~~ 591 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYE--AILSLEDDLLQ 591 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEE--EEechhHHHHH
Confidence 999999998 443 9999999999999999999999999876653 33445665553
No 107
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.28 E-value=2.6e-10 Score=142.95 Aligned_cols=101 Identities=18% Similarity=0.282 Sum_probs=85.5
Q ss_pred hcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHH-----HHHHHhcc----CC----CCccEEeeehhhhc
Q 001037 281 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE-----SAIVDFNS----HD----SDCFIFLLSIRAAG 347 (1179)
Q Consensus 281 ~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe-----~iI~~Fn~----~d----s~i~VLLlST~AGg 347 (1179)
..+.++||||+.+..++.|...|...++ ..|+|.++..+|. .++++|.. +. ..-..+|++|++++
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVae 347 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGE 347 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhh
Confidence 3567899999999999999999998887 8999999999999 78999975 11 01124689999999
Q ss_pred cCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceE
Q 001037 348 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 386 (1179)
Q Consensus 348 eGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV 386 (1179)
.|||+.. ++||++..|+ ..++||+||++|.|.....
T Consensus 348 rGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~ 383 (844)
T TIGR02621 348 VGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQAC 383 (844)
T ss_pred hcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCc
Confidence 9999986 9999987774 7999999999999986544
No 108
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.28 E-value=7.3e-11 Score=139.32 Aligned_cols=257 Identities=20% Similarity=0.291 Sum_probs=173.5
Q ss_pred HHHHHHHcC---CCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhc--hhhhccCCccEEEEcCCccCCChhh-
Q 001037 5 QSELHKWLP---SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRES- 78 (1179)
Q Consensus 5 ~~Ef~Kw~P---~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d--~~~L~ki~wdlVIIDEAHriKN~~S- 78 (1179)
++-|.+-+| ++++.+|.|.......+ ....+..|+|-|...+... ...|..-..+++|+|||..+....|
T Consensus 110 ~~tv~~v~~sf~g~~csvfIGGT~~~~d~----~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sf 185 (980)
T KOG4284|consen 110 KETVRKVAPSFTGARCSVFIGGTAHKLDL----IRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESF 185 (980)
T ss_pred HHHHHHhcccccCcceEEEecCchhhhhh----hhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhH
Confidence 344555555 67898998876655433 2234567999999988765 3445555788999999999876444
Q ss_pred --HHHHHHHhh-cCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCCCCchhHHHHHHHHH
Q 001037 79 --VLARDLDRY-RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 155 (1179)
Q Consensus 79 --k~tkaL~~L-ka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~ee~~~i 155 (1179)
.+...+..| +.+.++.+|||=-+| |.++
T Consensus 186 q~~In~ii~slP~~rQv~a~SATYp~n-Ldn~------------------------------------------------ 216 (980)
T KOG4284|consen 186 QDDINIIINSLPQIRQVAAFSATYPRN-LDNL------------------------------------------------ 216 (980)
T ss_pred HHHHHHHHHhcchhheeeEEeccCchh-HHHH------------------------------------------------
Confidence 344455555 567789999993222 2221
Q ss_pred HHHHHHhhh-hhhhhhhhhhhhcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHHH
Q 001037 156 IHRLHQILE-PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLN 234 (1179)
Q Consensus 156 i~rL~kvL~-pf~LRRtKkDV~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL~ 234 (1179)
|.++++ |.++|-...++. -|.-+..+...|.....
T Consensus 217 ---Lsk~mrdp~lVr~n~~d~~-L~GikQyv~~~~s~nns---------------------------------------- 252 (980)
T KOG4284|consen 217 ---LSKFMRDPALVRFNADDVQ-LFGIKQYVVAKCSPNNS---------------------------------------- 252 (980)
T ss_pred ---HHHHhcccceeecccCCce-eechhheeeeccCCcch----------------------------------------
Confidence 222222 223332222221 01112222222211100
Q ss_pred HHHHHHHHHcCCCCCCCCcccccchhhhhcccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEc
Q 001037 235 NRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRID 314 (1179)
Q Consensus 235 ~~l~~LRkicnhP~L~~~~l~~l~~~~lv~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rId 314 (1179)
...+| -|++.|.+++..+- =...||||....-++-|..+|...|+.+..|.
T Consensus 253 --veemr-------------------------lklq~L~~vf~~ip--y~QAlVF~~~~sra~~~a~~L~ssG~d~~~IS 303 (980)
T KOG4284|consen 253 --VEEMR-------------------------LKLQKLTHVFKSIP--YVQALVFCDQISRAEPIATHLKSSGLDVTFIS 303 (980)
T ss_pred --HHHHH-------------------------HHHHHHHHHHhhCc--hHHHHhhhhhhhhhhHHHHHhhccCCCeEEec
Confidence 00000 14555555555431 24678999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEE
Q 001037 315 GTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 391 (1179)
Q Consensus 315 Gsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrL 391 (1179)
|.|++.+|..+++.++ .-.|+ ||++|+..+.||+-..+|.||++|+|-+...|..||||++|.|...-. |.++
T Consensus 304 gaM~Q~~Rl~a~~~lr--~f~~r-ILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~a-VT~~ 376 (980)
T KOG4284|consen 304 GAMSQKDRLLAVDQLR--AFRVR-ILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAA-VTLL 376 (980)
T ss_pred cccchhHHHHHHHHhh--hceEE-EEEecchhhccCCccccceEEecCCCcchHHHHHHhhhccccccccee-EEEe
Confidence 9999999999999998 34555 588999999999999999999999999999999999999999977553 4444
No 109
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.28 E-value=1.1e-11 Score=143.84 Aligned_cols=123 Identities=25% Similarity=0.330 Sum_probs=112.2
Q ss_pred hcccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeee
Q 001037 263 VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 342 (1179)
Q Consensus 263 v~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlS 342 (1179)
+..+.|+..|..+|... ....+|||.+....++.|++.|.+.||.++.|+|+-++++|+.+|..|+.+..+ +|++
T Consensus 499 ~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~d---IlVa 573 (673)
T KOG0333|consen 499 VSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGD---ILVA 573 (673)
T ss_pred ecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCC---EEEE
Confidence 45567899999999876 457899999999999999999999999999999999999999999999976665 6888
Q ss_pred hhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEE
Q 001037 343 IRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 390 (1179)
Q Consensus 343 T~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~Vyr 390 (1179)
|+++|.||++++.++||+||..-+-..|..||||.+|.|+.-.+.-|+
T Consensus 574 TDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSfl 621 (673)
T KOG0333|consen 574 TDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFL 621 (673)
T ss_pred ecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEe
Confidence 999999999999999999999999999999999999999988765444
No 110
>PRK00254 ski2-like helicase; Provisional
Probab=99.26 E-value=2.4e-10 Score=144.36 Aligned_cols=81 Identities=14% Similarity=0.049 Sum_probs=62.9
Q ss_pred eEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeee-------cCCCC-CcchHHHHhhccccc
Q 001037 309 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII-------YDPDP-NPKNEEQAVARAHRI 380 (1179)
Q Consensus 309 ~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi-------~D~pW-NP~~~eQAiGRIhRI 380 (1179)
.+..++|+++.++|..+.+.|++ +.++ +|++|.+++.|+|++..+.||. ++.+. ....+.|++||++|.
T Consensus 297 gv~~hHagl~~~eR~~ve~~F~~--G~i~-VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~ 373 (720)
T PRK00254 297 GVAFHHAGLGRTERVLIEDAFRE--GLIK-VITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRP 373 (720)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHC--CCCe-EEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCC
Confidence 57889999999999999999995 4555 5888899999999998887774 33333 335789999999998
Q ss_pred CCcceEEEEEEE
Q 001037 381 GQKREVKVIYME 392 (1179)
Q Consensus 381 GQkkeV~VyrLv 392 (1179)
|....-.++.++
T Consensus 374 ~~d~~G~~ii~~ 385 (720)
T PRK00254 374 KYDEVGEAIIVA 385 (720)
T ss_pred CcCCCceEEEEe
Confidence 866554444443
No 111
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.22 E-value=6.9e-11 Score=146.02 Aligned_cols=128 Identities=17% Similarity=0.214 Sum_probs=110.3
Q ss_pred cCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhh
Q 001037 266 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 345 (1179)
Q Consensus 266 SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~A 345 (1179)
..|+.++...+.++...|..|||||......+.|...|...|+++..++|. ..+|+..+..|....+. ++++|..
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~---VtIATnm 462 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGA---VTIATNM 462 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCce---EEEEecc
Confidence 358888888888888899999999999999999999999999999999998 67999999999853333 6888999
Q ss_pred hccCCCCcc-------cceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeehhhhhh
Q 001037 346 AGRGLNLQS-------ADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 400 (1179)
Q Consensus 346 GgeGLNLQ~-------AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~I~~ 400 (1179)
+|+|+++.. .-+||++++|-|...+.|+.||++|.|..-....| ++.++.++.
T Consensus 463 AgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~--ls~eD~l~~ 522 (745)
T TIGR00963 463 AGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFF--LSLEDNLMR 522 (745)
T ss_pred ccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEE--EeccHHHHH
Confidence 999999887 66999999999999999999999999998776433 345666654
No 112
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.22 E-value=7.6e-10 Score=133.97 Aligned_cols=244 Identities=17% Similarity=0.271 Sum_probs=157.6
Q ss_pred hHHHHHHHHcC--CCcEEEEEcCh--hHHhHHHhhHhhhCCCCEEEEcHHHHHhchhhhccCCccEEEEcCCccCCChhh
Q 001037 3 MWQSELHKWLP--SVSCIYYVGAK--DQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES 78 (1179)
Q Consensus 3 QW~~Ef~Kw~P--~l~Vvvy~G~~--~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriKN~~S 78 (1179)
|=-..|.+|++ +++|....|.- ..|+.... ....+..+|||-|+..+..... -.+..+|||||=||+.-
T Consensus 326 QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~-~l~~G~~~ivVGTHALiQd~V~---F~~LgLVIiDEQHRFGV--- 398 (677)
T COG1200 326 QHYESLRKWLEPLGIRVALLTGSLKGKARKEILE-QLASGEIDIVVGTHALIQDKVE---FHNLGLVIIDEQHRFGV--- 398 (677)
T ss_pred HHHHHHHHHhhhcCCeEEEeecccchhHHHHHHH-HHhCCCCCEEEEcchhhhccee---ecceeEEEEeccccccH---
Confidence 44567899996 67888888864 34444443 4667889999999998875432 22467999999999952
Q ss_pred HHHHHHHhh-c-CCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCCCCchhHHHHHHHHHH
Q 001037 79 VLARDLDRY-R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIII 156 (1179)
Q Consensus 79 k~tkaL~~L-k-a~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~ee~~~ii 156 (1179)
..-..|..- . .++.|.|||||++..+. .. .|++.
T Consensus 399 ~QR~~L~~KG~~~Ph~LvMTATPIPRTLA--lt--------~fgDl---------------------------------- 434 (677)
T COG1200 399 HQRLALREKGEQNPHVLVMTATPIPRTLA--LT--------AFGDL---------------------------------- 434 (677)
T ss_pred HHHHHHHHhCCCCCcEEEEeCCCchHHHH--HH--------Hhccc----------------------------------
Confidence 233333333 4 68999999999987753 01 11110
Q ss_pred HHHHHhhhhhhhhhhhhhhhcCCCCce-E-EEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHHH
Q 001037 157 HRLHQILEPFMLRRRVEDVEGSLPPKV-S-IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLN 234 (1179)
Q Consensus 157 ~rL~kvL~pf~LRRtKkDV~~~LP~k~-e-~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL~ 234 (1179)
.-.+..+||+.. . .+..++. ..-..+|+.+...
T Consensus 435 ---------------dvS~IdElP~GRkpI~T~~i~~-~~~~~v~e~i~~e----------------------------- 469 (677)
T COG1200 435 ---------------DVSIIDELPPGRKPITTVVIPH-ERRPEVYERIREE----------------------------- 469 (677)
T ss_pred ---------------cchhhccCCCCCCceEEEEecc-ccHHHHHHHHHHH-----------------------------
Confidence 001223577763 2 2233322 2222334333221
Q ss_pred HHHHHHHHHcCCCCCCCCcccccchhhhhcccCHHHHHHHHHHHHhhcCCeEEEeehhH--------HHHHHHHHHHHH-
Q 001037 235 NRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMT--------KLLDILEEYLQW- 305 (1179)
Q Consensus 235 ~~l~~LRkicnhP~L~~~~l~~l~~~~lv~~SgKl~~L~~IL~el~~~g~KVLIFSqft--------~~ldiLe~~L~~- 305 (1179)
...|+++.+-|.-. ..+..+...|+.
T Consensus 470 ---------------------------------------------i~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~ 504 (677)
T COG1200 470 ---------------------------------------------IAKGRQAYVVCPLIEESEKLELQAAEELYEELKSF 504 (677)
T ss_pred ---------------------------------------------HHcCCEEEEEeccccccccchhhhHHHHHHHHHHH
Confidence 11233332222211 122333344442
Q ss_pred -cCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCC-CCcchHHHHhhcccccCCc
Q 001037 306 -RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQK 383 (1179)
Q Consensus 306 -~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~p-WNP~~~eQAiGRIhRIGQk 383 (1179)
.++++..+||.++.+++++++.+|+++. +. +|++|.+...|+|+++|+.+||.+.. +--++.-|--||++|=+..
T Consensus 505 ~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e--~~-ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~q 581 (677)
T COG1200 505 LPELKVGLVHGRMKPAEKDAVMEAFKEGE--ID-ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQ 581 (677)
T ss_pred cccceeEEEecCCChHHHHHHHHHHHcCC--Cc-EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcc
Confidence 2667899999999999999999999544 44 58899999999999999999999987 6788999999999997766
Q ss_pred ceEEEEE
Q 001037 384 REVKVIY 390 (1179)
Q Consensus 384 keV~Vyr 390 (1179)
.-|..++
T Consensus 582 SyC~Ll~ 588 (677)
T COG1200 582 SYCVLLY 588 (677)
T ss_pred eEEEEEe
Confidence 6654443
No 113
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.20 E-value=8.2e-10 Score=128.00 Aligned_cols=120 Identities=23% Similarity=0.352 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhc
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 347 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGg 347 (1179)
|+..|.+-|.+... .-+||||..-....+-|...|+.+++.+..++|++.+.+|.+.|.+|+.... . +|+.|+++.
T Consensus 454 Kl~wl~~~L~~f~S-~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~--~-VlvatDvaa 529 (731)
T KOG0339|consen 454 KLNWLLRHLVEFSS-EGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRK--P-VLVATDVAA 529 (731)
T ss_pred HHHHHHHHhhhhcc-CCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCC--c-eEEEeeHhh
Confidence 66666666655543 3489999999999999999999999999999999999999999999996433 3 577889999
Q ss_pred cCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 348 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 348 eGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
+||++....+||+||.--+-..+.|||||.+|.|-+ -| .|.|++
T Consensus 530 rgldI~~ikTVvnyD~ardIdththrigrtgRag~k-Gv-ayTlvT 573 (731)
T KOG0339|consen 530 RGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK-GV-AYTLVT 573 (731)
T ss_pred cCCCccccceeecccccchhHHHHHHhhhccccccc-ce-eeEEec
Confidence 999999999999999999999999999999999988 33 466665
No 114
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.18 E-value=1.3e-10 Score=134.61 Aligned_cols=112 Identities=21% Similarity=0.297 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHH----HcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhh
Q 001037 270 WILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ----WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 345 (1179)
Q Consensus 270 ~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~----~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~A 345 (1179)
..+..+|.. ....++|+|+........|...|+ .-.+.+-.++|+.+.+.|.+.+.+|+.+ ++.| |+++++
T Consensus 418 l~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g--~i~v-LIcSD~ 492 (620)
T KOG0350|consen 418 LAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKG--DINV-LICSDA 492 (620)
T ss_pred HhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcC--CceE-EEehhh
Confidence 344455544 246799999999988888888776 3466677799999999999999999964 4555 666799
Q ss_pred hccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceE
Q 001037 346 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 386 (1179)
Q Consensus 346 GgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV 386 (1179)
+++|+++-..+.||+||||-.-..|..|+||..|.||...+
T Consensus 493 laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a 533 (620)
T KOG0350|consen 493 LARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYA 533 (620)
T ss_pred hhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceE
Confidence 99999999999999999999999999999999999998775
No 115
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.17 E-value=1.5e-10 Score=130.27 Aligned_cols=114 Identities=19% Similarity=0.246 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhc
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 347 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGg 347 (1179)
|+.+|.++..-+ +=...||||+...++..|...|...|..+..++|.+..++|..++.+|+.+... +|++|.+.+
T Consensus 317 K~~~l~~lyg~~--tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~k---VLitTnV~A 391 (477)
T KOG0332|consen 317 KYQALVNLYGLL--TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEK---VLITTNVCA 391 (477)
T ss_pred HHHHHHHHHhhh--hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcce---EEEEechhh
Confidence 666666643322 123678999999999999999999999999999999999999999999965555 688999999
Q ss_pred cCCCCcccceeeecCCCC------CcchHHHHhhcccccCCcceE
Q 001037 348 RGLNLQSADTVIIYDPDP------NPKNEEQAVARAHRIGQKREV 386 (1179)
Q Consensus 348 eGLNLQ~AdtVIi~D~pW------NP~~~eQAiGRIhRIGQkkeV 386 (1179)
+||+.+..+.||+||+|- .+..|..||||++|.|.+.-+
T Consensus 392 RGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a 436 (477)
T KOG0332|consen 392 RGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLA 436 (477)
T ss_pred cccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceE
Confidence 999999999999999985 678999999999999977653
No 116
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.17 E-value=5.5e-10 Score=131.30 Aligned_cols=105 Identities=23% Similarity=0.387 Sum_probs=96.8
Q ss_pred CeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCC
Q 001037 284 HRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP 363 (1179)
Q Consensus 284 ~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~ 363 (1179)
++++||++....++.|..+|...++++.-|+|..+..+|.+.+..|.. +.+. +|++|.+++.|||+....+||+||+
T Consensus 338 e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~--g~~p-vlVaT~VaaRGlDi~~V~hVInyDm 414 (482)
T KOG0335|consen 338 EKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRN--GKAP-VLVATNVAARGLDIPNVKHVINYDM 414 (482)
T ss_pred ceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhc--CCcc-eEEEehhhhcCCCCCCCceeEEeec
Confidence 589999999999999999999999999999999999999999999995 4445 5788899999999999999999999
Q ss_pred CCCcchHHHHhhcccccCCcceEEEEEE
Q 001037 364 DPNPKNEEQAVARAHRIGQKREVKVIYM 391 (1179)
Q Consensus 364 pWNP~~~eQAiGRIhRIGQkkeV~VyrL 391 (1179)
|-+-..|..||||.+|.|+.-..+.+.-
T Consensus 415 P~d~d~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 415 PADIDDYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred CcchhhHHHhccccccCCCCceeEEEec
Confidence 9999999999999999999887766543
No 117
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.16 E-value=7.4e-10 Score=138.37 Aligned_cols=113 Identities=18% Similarity=0.182 Sum_probs=96.2
Q ss_pred HHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcC-CeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCC
Q 001037 274 RILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ-LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNL 352 (1179)
Q Consensus 274 ~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~G-i~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNL 352 (1179)
..|.++......+|||++.+.+.+.+...|.+.+ ..+..-||+.+.+.|...-++|+++. .++ ++||.+...|||.
T Consensus 244 ~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~--lra-vV~TSSLELGIDi 320 (814)
T COG1201 244 ERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGE--LKA-VVATSSLELGIDI 320 (814)
T ss_pred HHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCC--ceE-EEEccchhhcccc
Confidence 3344444455689999999999999999999887 78888999999999999999999644 555 7778999999999
Q ss_pred cccceeeecCCCCCcchHHHHhhcc-cccCCcceEEEE
Q 001037 353 QSADTVIIYDPDPNPKNEEQAVARA-HRIGQKREVKVI 389 (1179)
Q Consensus 353 Q~AdtVIi~D~pWNP~~~eQAiGRI-hRIGQkkeV~Vy 389 (1179)
-..|.||.|.+|-.-+...||+||+ ||+|....-.|+
T Consensus 321 G~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii 358 (814)
T COG1201 321 GDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIII 358 (814)
T ss_pred CCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEE
Confidence 9999999999999999999999999 788876554333
No 118
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.15 E-value=6e-10 Score=129.32 Aligned_cols=109 Identities=22% Similarity=0.317 Sum_probs=95.9
Q ss_pred HHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCC
Q 001037 272 LDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLN 351 (1179)
Q Consensus 272 L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLN 351 (1179)
|..++..+. ..+++||.+....+..|.-.|-..|+++.-++|+.++++|...++.|++ ..|. +|++|++++.||+
T Consensus 417 l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~--~eid-vLiaTDvAsRGLD 491 (691)
T KOG0338|consen 417 LASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKK--EEID-VLIATDVASRGLD 491 (691)
T ss_pred HHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHh--ccCC-EEEEechhhccCC
Confidence 334444443 4689999999999999999999999999999999999999999999994 4555 5888899999999
Q ss_pred CcccceeeecCCCCCcchHHHHhhcccccCCcce
Q 001037 352 LQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 385 (1179)
Q Consensus 352 LQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkke 385 (1179)
+...-+||+|+.|-.-..|..|+||..|.|..-.
T Consensus 492 I~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGr 525 (691)
T KOG0338|consen 492 IEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGR 525 (691)
T ss_pred ccceeEEEeccCchhHHHHHHHhhhhhhcccCcc
Confidence 9999999999999999999999999999987543
No 119
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.12 E-value=3.1e-09 Score=123.86 Aligned_cols=85 Identities=22% Similarity=0.267 Sum_probs=70.9
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHcC--CeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceee
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWRQ--LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 359 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~G--i~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVI 359 (1179)
.+.++||||+....++.+...|+..+ +.+..++|.++..+|.+.. .+. +|++|++++.|||+.. +.||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~--------~~~-iLVaTdv~~rGiDi~~-~~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM--------QFD-ILLGTSTVDVGVDFKR-DWLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc--------cCC-EEEEecHHhcccCCCC-ceEE
Confidence 57899999999999999999999864 5788899999998887543 222 7899999999999985 4666
Q ss_pred ecCCCCCcchHHHHhhccc
Q 001037 360 IYDPDPNPKNEEQAVARAH 378 (1179)
Q Consensus 360 i~D~pWNP~~~eQAiGRIh 378 (1179)
++ +-++..|.||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 56 678899999999974
No 120
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.11 E-value=7.8e-10 Score=125.36 Aligned_cols=116 Identities=25% Similarity=0.351 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhh
Q 001037 267 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 346 (1179)
Q Consensus 267 gKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AG 346 (1179)
.|+..+..++. ....+.|||||+....+++-|..-|...||..-.|+|.-.+.+|+..++.|+. +.++| |+.|+.+
T Consensus 450 ~k~~~~~~f~~-~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ks--G~vrI-LvaTDla 525 (629)
T KOG0336|consen 450 EKLEIVQFFVA-NMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKS--GEVRI-LVATDLA 525 (629)
T ss_pred HHHHHHHHHHH-hcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhc--CceEE-EEEechh
Confidence 45555544444 34678999999999999999999999999999999999999999999999994 55664 7888999
Q ss_pred ccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceE
Q 001037 347 GRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 386 (1179)
Q Consensus 347 geGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV 386 (1179)
+.||++....||++||.|-|-..|..|+||++|.|.+-.-
T Consensus 526 SRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~s 565 (629)
T KOG0336|consen 526 SRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTS 565 (629)
T ss_pred hcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcce
Confidence 9999999999999999999999999999999999988764
No 121
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.11 E-value=5.3e-09 Score=131.03 Aligned_cols=108 Identities=15% Similarity=0.128 Sum_probs=80.5
Q ss_pred CCeEEEeehhHHHHHHHHHHHHHc-----CCeEEEEcCCCCHH---------------------HHHHHHHHhccCCCCc
Q 001037 283 GHRVLLFSTMTKLLDILEEYLQWR-----QLVYRRIDGTTSLE---------------------DRESAIVDFNSHDSDC 336 (1179)
Q Consensus 283 g~KVLIFSqft~~ldiLe~~L~~~-----Gi~~~rIdGsts~e---------------------eRe~iI~~Fn~~ds~i 336 (1179)
+.|.+|||..+..+..+.+.|... +...+.++|+...+ ....++++|.+ ...+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~-~~~~ 592 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKK-EENP 592 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcC-CCCc
Confidence 579999999999888888887654 34566777765433 12478999986 3456
Q ss_pred cEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhccccc-CC-cceEEEEEEEe
Q 001037 337 FIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI-GQ-KREVKVIYMEA 393 (1179)
Q Consensus 337 ~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRI-GQ-kkeV~VyrLva 393 (1179)
+| |+..+...+|+|.+.++++++.-|--+ +.+.|++||+.|+ +- +....|+.++-
T Consensus 593 ~i-lIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 593 KL-LIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred eE-EEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccccCCCCCCEEEEECcC
Confidence 66 455599999999999999999888765 4578999999995 43 33467777654
No 122
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.11 E-value=1.6e-10 Score=138.96 Aligned_cols=120 Identities=16% Similarity=0.220 Sum_probs=109.1
Q ss_pred cHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHh
Q 001037 875 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 954 (1179)
Q Consensus 875 ~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~ 954 (1179)
.+-.+-+-++++..+.+.+|.+|+++-+.|.+||.|++.|+||.+ |.+||-|.-|..|++...|.+...|..|+.||+.
T Consensus 50 ~~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~-i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~e 128 (629)
T KOG1827|consen 50 DPPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYV-IQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTE 128 (629)
T ss_pred ChHHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCccee-ecCcccHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 445677899999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHHHHH------hhhcCCCchHHhhh
Q 001037 955 GAMQFYGFSHEVRSEARKVHDLFFDLL------KIAFPDTDFREARS 995 (1179)
Q Consensus 955 na~~y~~~~se~~~~A~~l~~~f~~~~------~~~~~~~~~~~~~~ 995 (1179)
||+.||.+.|++|++|..|.+.|.... ....++.++..|..
T Consensus 129 na~~~n~~ds~~~~~s~~l~~~~~~~~~~~~d~e~s~~~~~~l~~~~ 175 (629)
T KOG1827|consen 129 NARLYNRPDSLIYKDSGELEKYFISLEDEKKDGELSMESNEELKAGG 175 (629)
T ss_pred HHHHhcCcchhhhhhhhhhhcchhhhhccccchhhccccccccccCC
Confidence 999999999999999999999998855 34455555555543
No 123
>PRK09401 reverse gyrase; Reviewed
Probab=99.07 E-value=4.4e-09 Score=137.89 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHH---HHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeee--
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKL---LDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS-- 342 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~---ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlS-- 342 (1179)
|...|..++..+ +..+||||+.... ++.|..+|...|+++..++|++ ...+++|. ++++.||+++
T Consensus 316 k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~--~G~~~VLVatas 385 (1176)
T PRK09401 316 SVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFE--EGEVDVLVGVAS 385 (1176)
T ss_pred HHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHH--CCCCCEEEEecC
Confidence 555666666543 4689999998666 9999999999999999999999 23469999 5567776665
Q ss_pred -hhhhccCCCCcc-cceeeecCCCC------CcchHHHHhhccccc
Q 001037 343 -IRAAGRGLNLQS-ADTVIIYDPDP------NPKNEEQAVARAHRI 380 (1179)
Q Consensus 343 -T~AGgeGLNLQ~-AdtVIi~D~pW------NP~~~eQAiGRIhRI 380 (1179)
|++++.|||++. ..+||||+.|- ....+..++||+..+
T Consensus 386 ~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 386 YYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred CCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 799999999998 89999999997 666778888888743
No 124
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.02 E-value=1.4e-08 Score=126.47 Aligned_cols=105 Identities=14% Similarity=0.165 Sum_probs=84.8
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHc--CCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceee
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 359 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~--Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVI 359 (1179)
.+..+|||+.....++.+...|... ++.+..++|+++.. ++.+++|.. ++..+ +|++|..++.||++..+++||
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~-~gk~k-ILVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYS-SKNPS-IIISTPYLESSVTIRNATHVY 469 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhc-cCcee-EEeccChhhccccccCeeEEE
Confidence 3568999999999999999999887 79999999999864 567788742 34444 588999999999999999999
Q ss_pred ecCC---C---------CCcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 360 IYDP---D---------PNPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 360 i~D~---p---------WNP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
.++. | .+...+.||.||++|. + +-.+|+|.+
T Consensus 470 D~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~--~G~c~rLyt 512 (675)
T PHA02653 470 DTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-S--PGTYVYFYD 512 (675)
T ss_pred ECCCccCCCcccCcccccCHHHHHHhccCcCCC-C--CCeEEEEEC
Confidence 9982 2 2666889999999998 3 445667765
No 125
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.01 E-value=2e-08 Score=122.03 Aligned_cols=93 Identities=22% Similarity=0.255 Sum_probs=72.4
Q ss_pred HHHHHHHHHHc--CCeEEEEcCCCCHHHH--HHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCC--C-c-
Q 001037 296 LDILEEYLQWR--QLVYRRIDGTTSLEDR--ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP--N-P- 367 (1179)
Q Consensus 296 ldiLe~~L~~~--Gi~~~rIdGsts~eeR--e~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pW--N-P- 367 (1179)
.+.+++.|... +.++.++|+.++...+ +++++.|.++.. . +|++|+..+.|+|+..++.|+++|.+- | |
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~--~-ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd 347 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKA--D-ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD 347 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCC--C-EEEeCcccccCCCCCcccEEEEEcCcccccCcc
Confidence 45666777665 7899999999876655 889999996444 4 578889999999999999998776652 2 3
Q ss_pred --------chHHHHhhcccccCCcceEEEEEE
Q 001037 368 --------KNEEQAVARAHRIGQKREVKVIYM 391 (1179)
Q Consensus 368 --------~~~eQAiGRIhRIGQkkeV~VyrL 391 (1179)
..+.|+.||++|.+....|.+..+
T Consensus 348 ~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 348 FRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred cchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 568999999999888777754443
No 126
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=98.97 E-value=6.5e-10 Score=145.85 Aligned_cols=98 Identities=14% Similarity=0.258 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhhhcC
Q 001037 882 CKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYG 961 (1179)
Q Consensus 882 c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~y~~ 961 (1179)
|..++..+-.+.+ +..|.+++..++.||||+| |++||||.+|.+|+..+.|.+..+|+.||+|||.||.+||+
T Consensus 1306 ~e~il~e~~~~~~------awPFlepVn~~~vp~Y~~I-Ik~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~ 1378 (1404)
T KOG1245|consen 1306 CEDILHELVVHKA------AWPFLEPVNPKEVPDYYDI-IKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNE 1378 (1404)
T ss_pred HHHHHHHHHHhhh------cchhhccCChhhcccHHHH-hcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 7888888777766 5789999999999999999 99999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHhhhcCC
Q 001037 962 FSHEVRSEARKVHDLFFDLLKIAFPD 987 (1179)
Q Consensus 962 ~~se~~~~A~~l~~~f~~~~~~~~~~ 987 (1179)
. |+++++...|+.+|-.+....||.
T Consensus 1379 ~-s~i~~ag~~l~~ff~~~~~~~~~~ 1403 (1404)
T KOG1245|consen 1379 D-SEIGRAGTCLRRFFHKRWRKKFPV 1403 (1404)
T ss_pred c-hhhhhhcchHHHHHHHHHHhhcCC
Confidence 9 999999999999999999999996
No 127
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.97 E-value=1.1e-08 Score=125.49 Aligned_cols=122 Identities=14% Similarity=0.204 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhhc---C---CeEEEeehhHHHHHHHHHHHHHc-----CCeEEEEcCCCCHHHHHHHHHHhccCCCCc
Q 001037 268 KLWILDRILIKLQRT---G---HRVLLFSTMTKLLDILEEYLQWR-----QLVYRRIDGTTSLEDRESAIVDFNSHDSDC 336 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~---g---~KVLIFSqft~~ldiLe~~L~~~-----Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i 336 (1179)
....+.+.|.+++.. | .|.||||....+++.|...|... |--++.|+|... +=+..|..|-. +..+
T Consensus 405 ~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~-ke~~ 481 (875)
T COG4096 405 RTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFID-KEKY 481 (875)
T ss_pred hHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHh-cCCC
Confidence 445666666666554 3 58999999999999999999764 233567888764 44567888886 5566
Q ss_pred cEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhccccc-------CCcce-EEEEEEE
Q 001037 337 FIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI-------GQKRE-VKVIYME 392 (1179)
Q Consensus 337 ~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRI-------GQkke-V~VyrLv 392 (1179)
..|.++.+....|+|...|.++||+-..-+-..+.|.+||.-|+ ||.|. ..|+.++
T Consensus 482 P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 482 PRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred CceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 67899999999999999999999999999999999999999997 35455 4555554
No 128
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.96 E-value=4.2e-08 Score=123.38 Aligned_cols=131 Identities=12% Similarity=0.109 Sum_probs=113.6
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeeh
Q 001037 264 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 343 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST 343 (1179)
....|+.++.+-+.++...|.-|||||......+.|..+|...|+++..|+|.....+++.+...|+.+ . ++++|
T Consensus 425 t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~---VtIAT 499 (896)
T PRK13104 425 TQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--A---VTIAT 499 (896)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--c---EEEec
Confidence 344689999988888899999999999999999999999999999999999999999999999999953 3 78899
Q ss_pred hhhccCCCCcc--------------------------------------cceeeecCCCCCcchHHHHhhcccccCCcce
Q 001037 344 RAAGRGLNLQS--------------------------------------ADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 385 (1179)
Q Consensus 344 ~AGgeGLNLQ~--------------------------------------AdtVIi~D~pWNP~~~eQAiGRIhRIGQkke 385 (1179)
..+|.|+++.- .=+||.-+.+-|-..+.|-.||++|.|..-.
T Consensus 500 NmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGs 579 (896)
T PRK13104 500 NMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGS 579 (896)
T ss_pred cCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCc
Confidence 99999999662 3378888899999999999999999999887
Q ss_pred EEEEEEEeehhhhhhh
Q 001037 386 VKVIYMEAVVDKISSH 401 (1179)
Q Consensus 386 V~VyrLvaVEE~I~~~ 401 (1179)
..+| +++|+.++..
T Consensus 580 s~f~--lSleD~l~~~ 593 (896)
T PRK13104 580 SRFY--LSLEDNLMRI 593 (896)
T ss_pred eEEE--EEcCcHHHHH
Confidence 6544 3467777653
No 129
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.95 E-value=1.3e-08 Score=129.37 Aligned_cols=105 Identities=19% Similarity=0.165 Sum_probs=89.2
Q ss_pred CCeEEEeehhHHHHHHHHHHHHH---cCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceee
Q 001037 283 GHRVLLFSTMTKLLDILEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 359 (1179)
Q Consensus 283 g~KVLIFSqft~~ldiLe~~L~~---~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVI 359 (1179)
+.++|||+.....++.+...|.. .++.++.++|+++.++|..+++.|.+ +..+ +|++|.+++.||++..+++||
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~--G~rk-VlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQ--GRRK-VVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhccc--CCeE-EEEecchHhhcccccCceEEE
Confidence 46799999999999999999987 47899999999999999999999984 3444 578899999999999999999
Q ss_pred ecCCC----CCcch--------------HHHHhhcccccCCcceEEEEEEEe
Q 001037 360 IYDPD----PNPKN--------------EEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 360 i~D~p----WNP~~--------------~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
.++.+ |||.. +.||.||++|. ++=.+|+|.+
T Consensus 286 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t 334 (819)
T TIGR01970 286 DSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWS 334 (819)
T ss_pred EcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCC
Confidence 99876 56654 78999999997 3445678866
No 130
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=98.95 E-value=1.7e-09 Score=121.90 Aligned_cols=120 Identities=28% Similarity=0.379 Sum_probs=105.2
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeeh
Q 001037 264 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 343 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST 343 (1179)
..-+|+.. +|.-|+.+.-.|||||....-++.|.+||-.+|+..+.|+|+-.+++|...|..|+.+..+ +|+.|
T Consensus 405 kqEaKiVy---lLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKD---VLVAT 478 (610)
T KOG0341|consen 405 KQEAKIVY---LLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKD---VLVAT 478 (610)
T ss_pred Hhhhhhhh---HHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCc---eEEEe
Confidence 33445444 4555567888999999999999999999999999999999999999999999999976655 68899
Q ss_pred hhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEE
Q 001037 344 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 389 (1179)
Q Consensus 344 ~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~Vy 389 (1179)
++++-||+++...+||+||.|-.-..|..||||.+|-|.+.-.+.|
T Consensus 479 DVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTf 524 (610)
T KOG0341|consen 479 DVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTF 524 (610)
T ss_pred cchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeee
Confidence 9999999999999999999999999999999999999988655433
No 131
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.95 E-value=3.3e-08 Score=123.71 Aligned_cols=129 Identities=14% Similarity=0.163 Sum_probs=108.8
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehh
Q 001037 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 344 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~ 344 (1179)
...|+.+|.+.+......+..|||||......+.|...|...|+++..++|.....++..+...|+. +. ++++|.
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~--g~---VtIATn 496 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQR--GA---VTIATN 496 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCC--ce---EEEEec
Confidence 3458889999998888899999999999999999999999999999999999876666666666653 22 688899
Q ss_pred hhccCCCCc---ccc-----eeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeehhhhhh
Q 001037 345 AAGRGLNLQ---SAD-----TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 400 (1179)
Q Consensus 345 AGgeGLNLQ---~Ad-----tVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~I~~ 400 (1179)
.+|+|+++. .+. +||.++.|-|...+.|+.||++|.|..-.... +++.++.++.
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~--~~sleD~l~~ 558 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRF--YLSLEDDLMR 558 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEE--EEeccchHHH
Confidence 999999985 566 99999999999999999999999999887643 3445666654
No 132
>PRK09694 helicase Cas3; Provisional
Probab=98.89 E-value=1.6e-07 Score=119.90 Aligned_cols=101 Identities=20% Similarity=0.177 Sum_probs=82.7
Q ss_pred hhcCCeEEEeehhHHHHHHHHHHHHHcC---CeEEEEcCCCCHHHH----HHHHHHhcc-CCCCccEEeeehhhhccCCC
Q 001037 280 QRTGHRVLLFSTMTKLLDILEEYLQWRQ---LVYRRIDGTTSLEDR----ESAIVDFNS-HDSDCFIFLLSIRAAGRGLN 351 (1179)
Q Consensus 280 ~~~g~KVLIFSqft~~ldiLe~~L~~~G---i~~~rIdGsts~eeR----e~iI~~Fn~-~ds~i~VLLlST~AGgeGLN 351 (1179)
...|.+|||||+.+..+..+.+.|+..+ +.+..++|.++..+| .++++.|.. +......||++|++...|||
T Consensus 557 ~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLD 636 (878)
T PRK09694 557 ANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLD 636 (878)
T ss_pred HhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheee
Confidence 3568899999999999999999999765 679999999999999 467889943 22111347899999999999
Q ss_pred CcccceeeecCCCCCcchHHHHhhcccccCCc
Q 001037 352 LQSADTVIIYDPDPNPKNEEQAVARAHRIGQK 383 (1179)
Q Consensus 352 LQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQk 383 (1179)
+ .+|.||....| ...++||+||+||-|.+
T Consensus 637 I-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 637 L-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred c-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 9 57888876555 56899999999999875
No 133
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=98.88 E-value=5.8e-08 Score=127.62 Aligned_cols=89 Identities=15% Similarity=0.185 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhhcCCeEEEeehhH---HHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeee---
Q 001037 269 LWILDRILIKLQRTGHRVLLFSTMT---KLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS--- 342 (1179)
Q Consensus 269 l~~L~~IL~el~~~g~KVLIFSqft---~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlS--- 342 (1179)
...|.++|..+ +..+|||++.. ..++.|...|...|+++..++|+++ +..++.|. ++++.||+++
T Consensus 315 ~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr--~G~~~vLVata~~ 385 (1171)
T TIGR01054 315 KETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFA--EGEIDVLIGVASY 385 (1171)
T ss_pred HHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHH--cCCCCEEEEeccc
Confidence 34566666543 57899999988 8999999999999999999999986 36899999 5567776665
Q ss_pred hhhhccCCCCcc-cceeeecCCCCC
Q 001037 343 IRAAGRGLNLQS-ADTVIIYDPDPN 366 (1179)
Q Consensus 343 T~AGgeGLNLQ~-AdtVIi~D~pWN 366 (1179)
|+++++||||+. .++|||||+|--
T Consensus 386 tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 386 YGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred cCcccccCCCCccccEEEEECCCCE
Confidence 699999999998 799999999943
No 134
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=98.87 E-value=2.3e-08 Score=117.37 Aligned_cols=98 Identities=18% Similarity=0.228 Sum_probs=90.6
Q ss_pred CCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecC
Q 001037 283 GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD 362 (1179)
Q Consensus 283 g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D 362 (1179)
..+.||||+.++.+..|.-+|...++..+.|+..|.+.+|.+.+++|.+... .+|++|++++.||+++...|||||.
T Consensus 463 PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~---~VLiaTDVAARGLDIp~V~HVIHYq 539 (731)
T KOG0347|consen 463 PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPS---GVLIATDVAARGLDIPGVQHVIHYQ 539 (731)
T ss_pred CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCC---eEEEeehhhhccCCCCCcceEEEee
Confidence 4589999999999999999999999999999999999999999999996222 3788899999999999999999999
Q ss_pred CCCCcchHHHHhhcccccCCc
Q 001037 363 PDPNPKNEEQAVARAHRIGQK 383 (1179)
Q Consensus 363 ~pWNP~~~eQAiGRIhRIGQk 383 (1179)
.|-....|..|-||..|.+..
T Consensus 540 VPrtseiYVHRSGRTARA~~~ 560 (731)
T KOG0347|consen 540 VPRTSEIYVHRSGRTARANSE 560 (731)
T ss_pred cCCccceeEecccccccccCC
Confidence 999999999999999998754
No 135
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.85 E-value=9.1e-09 Score=115.76 Aligned_cols=118 Identities=21% Similarity=0.286 Sum_probs=107.2
Q ss_pred ccCHHHHHHHHHHHHhh-cCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeeh
Q 001037 265 SCGKLWILDRILIKLQR-TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 343 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~-~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST 343 (1179)
..+|-..|..+|..... .+..++||++.+.+..+|...|+..++.+..+++.+++.+|...+.+|+.+. ++ +|++|
T Consensus 235 ~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~--~~-iliaT 311 (442)
T KOG0340|consen 235 IDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNA--AR-ILIAT 311 (442)
T ss_pred hhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcC--cc-EEEEe
Confidence 34677889999988876 5678999999999999999999999999999999999999999999999644 34 58888
Q ss_pred hhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcce
Q 001037 344 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 385 (1179)
Q Consensus 344 ~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkke 385 (1179)
++++.||+++..+.||+||.|-.|..|+.|.||..|.|....
T Consensus 312 DVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 312 DVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred chhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcc
Confidence 999999999999999999999999999999999999998766
No 136
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.85 E-value=4.9e-08 Score=124.35 Aligned_cols=106 Identities=19% Similarity=0.218 Sum_probs=88.7
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHH---cCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCccccee
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 358 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~---~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtV 358 (1179)
.+..+|||+.-...++.+.+.|.. .++.++.++|+++.++|.+++..|.+ +..+ +|++|.++..||++..+++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~--G~rk-VlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPA--GRRK-VVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccC--CCeE-EEEecchHHhcccccCceEE
Confidence 357899999999999999999986 57889999999999999999999974 3344 68889999999999999999
Q ss_pred eecCCC----CCcc--------------hHHHHhhcccccCCcceEEEEEEEe
Q 001037 359 IIYDPD----PNPK--------------NEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 359 Ii~D~p----WNP~--------------~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
|.++.+ |+|. .+.||.||++|. .+=.+|+|.+
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t 337 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYS 337 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecC
Confidence 997765 3333 589999999997 3556788866
No 137
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.85 E-value=2.9e-07 Score=115.79 Aligned_cols=130 Identities=15% Similarity=0.193 Sum_probs=110.8
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehh
Q 001037 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 344 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~ 344 (1179)
...|+.++...+.++...|..|||||......+.|...|...|+++..|+|. ..+|+..|..|....+. ++++|.
T Consensus 412 ~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~---VtIATN 486 (830)
T PRK12904 412 EKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA---VTIATN 486 (830)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCce---EEEecc
Confidence 3469999999998888899999999999999999999999999999999995 67999999999854443 688899
Q ss_pred hhccCCCCcc--------------------------------------cceeeecCCCCCcchHHHHhhcccccCCcceE
Q 001037 345 AAGRGLNLQS--------------------------------------ADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 386 (1179)
Q Consensus 345 AGgeGLNLQ~--------------------------------------AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV 386 (1179)
.+|+|+|+.- .=+||.-+.+-|-..+.|..||++|.|..-..
T Consensus 487 mAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss 566 (830)
T PRK12904 487 MAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSS 566 (830)
T ss_pred cccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCce
Confidence 9999999663 34788889999999999999999999999887
Q ss_pred EEEEEEeehhhhhhh
Q 001037 387 KVIYMEAVVDKISSH 401 (1179)
Q Consensus 387 ~VyrLvaVEE~I~~~ 401 (1179)
.+| +++|+.++..
T Consensus 567 ~f~--lSleD~l~~~ 579 (830)
T PRK12904 567 RFY--LSLEDDLMRI 579 (830)
T ss_pred eEE--EEcCcHHHHh
Confidence 544 3467766643
No 138
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.81 E-value=6.1e-07 Score=112.93 Aligned_cols=130 Identities=12% Similarity=0.127 Sum_probs=112.8
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehh
Q 001037 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 344 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~ 344 (1179)
...|+.++.+-+.++.+.|..|||||......+.|..+|...|+++..+++.....++..+...|+.+ . ++++|.
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G--~---VtIATn 505 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTG--A---VTIATN 505 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCC--c---EEEecC
Confidence 35788899888888999999999999999999999999999999999999999999999999999853 3 688999
Q ss_pred hhccCCCCcc-------------------------------------cceeeecCCCCCcchHHHHhhcccccCCcceEE
Q 001037 345 AAGRGLNLQS-------------------------------------ADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 387 (1179)
Q Consensus 345 AGgeGLNLQ~-------------------------------------AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~ 387 (1179)
.+|.|+++.- .=+||.-+.+-|-..+.|..||++|.|..-...
T Consensus 506 mAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~ 585 (908)
T PRK13107 506 MAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSR 585 (908)
T ss_pred CcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCcee
Confidence 9999999662 347888899999999999999999999988764
Q ss_pred EEEEEeehhhhhhh
Q 001037 388 VIYMEAVVDKISSH 401 (1179)
Q Consensus 388 VyrLvaVEE~I~~~ 401 (1179)
+| +++|+.++..
T Consensus 586 f~--lSlED~L~r~ 597 (908)
T PRK13107 586 FY--LSMEDSLMRI 597 (908)
T ss_pred EE--EEeCcHHHHH
Confidence 43 3467776643
No 139
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.81 E-value=1.9e-07 Score=119.47 Aligned_cols=118 Identities=24% Similarity=0.222 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHH----HHHHHcC----CeEEEEcCCCCHHHHHHHHHHhccCCCCccEE
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILE----EYLQWRQ----LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 339 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe----~~L~~~G----i~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VL 339 (1179)
+...+..++..+...+-+.|+|+.....++.+. ..+...+ ..+..+.|++..++|..+...|+.++.. +
T Consensus 291 ~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~---~ 367 (851)
T COG1205 291 ALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELL---G 367 (851)
T ss_pred hHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCcc---E
Confidence 444555666667778999999999999888886 4444445 5688889999999999999999975554 6
Q ss_pred eeehhhhccCCCCcccceeeecCCCC-CcchHHHHhhcccccCCcceEEE
Q 001037 340 LLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVKV 388 (1179)
Q Consensus 340 LlST~AGgeGLNLQ~AdtVIi~D~pW-NP~~~eQAiGRIhRIGQkkeV~V 388 (1179)
+++|.++..|+++...+.||.+-.|- .-..+.|+.||++|-+|.-.+.+
T Consensus 368 ~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~ 417 (851)
T COG1205 368 VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLV 417 (851)
T ss_pred EecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEE
Confidence 89999999999999999999999998 78999999999999996655433
No 140
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.81 E-value=4.6e-07 Score=114.04 Aligned_cols=100 Identities=23% Similarity=0.251 Sum_probs=77.5
Q ss_pred eehhHHHHHHHHHHHHHc--CCeEEEEcCCCC--HHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCC
Q 001037 289 FSTMTKLLDILEEYLQWR--QLVYRRIDGTTS--LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD 364 (1179)
Q Consensus 289 FSqft~~ldiLe~~L~~~--Gi~~~rIdGsts--~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~p 364 (1179)
|..+....+.+++.|... +.++.++++.+. .++++++++.|.+++.. +|++|+..+.|+|++..+.|+++|.+
T Consensus 432 l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~iakG~d~p~v~lV~il~aD 508 (679)
T PRK05580 432 LVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEAD---ILIGTQMLAKGHDFPNVTLVGVLDAD 508 (679)
T ss_pred eEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCC---EEEEChhhccCCCCCCcCEEEEEcCc
Confidence 333444566777777765 889999999886 46799999999964444 57888999999999999999888765
Q ss_pred ---CCc---------chHHHHhhcccccCCcceEEEEEE
Q 001037 365 ---PNP---------KNEEQAVARAHRIGQKREVKVIYM 391 (1179)
Q Consensus 365 ---WNP---------~~~eQAiGRIhRIGQkkeV~VyrL 391 (1179)
..| ..+.|+.||++|.|....|.+...
T Consensus 509 ~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~ 547 (679)
T PRK05580 509 LGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTY 547 (679)
T ss_pred hhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeC
Confidence 223 578999999999888777765443
No 141
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=98.80 E-value=6.2e-08 Score=121.37 Aligned_cols=117 Identities=23% Similarity=0.268 Sum_probs=105.7
Q ss_pred cCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhh
Q 001037 266 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 345 (1179)
Q Consensus 266 SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~A 345 (1179)
..|+..|..+|.+... ..++|||++....++.|...|...|+.+..|+|+.+..+|...+++|+++. + .||+.|+.
T Consensus 597 ~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~--~-~LLvaTsv 672 (997)
T KOG0334|consen 597 NEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGV--V-NLLVATSV 672 (997)
T ss_pred hHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccC--c-eEEEehhh
Confidence 3588999999988765 678999999999999999999999999999999999999999999999633 3 37888999
Q ss_pred hccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceE
Q 001037 346 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 386 (1179)
Q Consensus 346 GgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV 386 (1179)
++.||+...-..||+||.|--...|..|.||+.|.|.+-..
T Consensus 673 varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~A 713 (997)
T KOG0334|consen 673 VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAA 713 (997)
T ss_pred hhcccccccceEEEEcccchhHHHHHHHhcccccCCcccee
Confidence 99999999999999999998888999999999999988743
No 142
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.80 E-value=3.6e-08 Score=122.89 Aligned_cols=113 Identities=22% Similarity=0.205 Sum_probs=102.2
Q ss_pred cCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhh
Q 001037 266 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 345 (1179)
Q Consensus 266 SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~A 345 (1179)
.+++..|...|..+...|.+|||||.....++.|.++|...|+.+..++|.++..+|.+++..|+. +.+. +|++|..
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~--G~i~-VLV~t~~ 501 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL--GEFD-VLVGINL 501 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhc--CCce-EEEEcCh
Confidence 468888888888888899999999999999999999999999999999999999999999999984 4454 4778899
Q ss_pred hccCCCCcccceeeecC-----CCCCcchHHHHhhcccccC
Q 001037 346 AGRGLNLQSADTVIIYD-----PDPNPKNEEQAVARAHRIG 381 (1179)
Q Consensus 346 GgeGLNLQ~AdtVIi~D-----~pWNP~~~eQAiGRIhRIG 381 (1179)
+++|++++.++.||++| .+-+...+.|++||++|..
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~ 542 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV 542 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC
Confidence 99999999999999999 5668889999999999973
No 143
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.80 E-value=5.7e-08 Score=122.61 Aligned_cols=108 Identities=25% Similarity=0.240 Sum_probs=75.3
Q ss_pred HHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHH----c---------------------------------CCeEEEE
Q 001037 271 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----R---------------------------------QLVYRRI 313 (1179)
Q Consensus 271 ~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~----~---------------------------------Gi~~~rI 313 (1179)
.+.+++....+.|..||||++.+......+..|.. . -..+..-
T Consensus 241 ~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafH 320 (766)
T COG1204 241 LALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFH 320 (766)
T ss_pred HHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcccc
Confidence 33444455556777888888776665555555541 0 0113445
Q ss_pred cCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeee-----cC-----CCCCcchHHHHhhcccccCC
Q 001037 314 DGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII-----YD-----PDPNPKNEEQAVARAHRIGQ 382 (1179)
Q Consensus 314 dGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi-----~D-----~pWNP~~~eQAiGRIhRIGQ 382 (1179)
+.+++.++|.-+-+.|+ ++.++| |+||...+.|+||++ ++||+ || -+-++..+.|..||++|.|=
T Consensus 321 hAGL~~~~R~~vE~~Fr--~g~ikV-lv~TpTLA~GVNLPA-~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~ 395 (766)
T COG1204 321 HAGLPREDRQLVEDAFR--KGKIKV-LVSTPTLAAGVNLPA-RTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGY 395 (766)
T ss_pred ccCCCHHHHHHHHHHHh--cCCceE-EEechHHhhhcCCcc-eEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCc
Confidence 67889999999999999 556665 888899999999995 44443 45 33467889999999999884
No 144
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.78 E-value=2e-07 Score=118.90 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=86.2
Q ss_pred HHHHHhhcCCeEEEeehhHHHHHHHHHHHHHc--CCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCC
Q 001037 275 ILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNL 352 (1179)
Q Consensus 275 IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~--Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNL 352 (1179)
|++++. .|-+|-.-.+....+..+...|+.. ..++++.||.|+..+-+.++..|.+++ +. +|+||.....|||+
T Consensus 796 I~REl~-RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~--~d-VLv~TTIIEtGIDI 871 (1139)
T COG1197 796 ILRELL-RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGE--YD-VLVCTTIIETGIDI 871 (1139)
T ss_pred HHHHHh-cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCC--CC-EEEEeeeeecCcCC
Confidence 344443 3556666667778888888888765 667999999999999999999999544 44 57788999999999
Q ss_pred cccceeeecCCC-CCcchHHHHhhcccccCCcceE
Q 001037 353 QSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREV 386 (1179)
Q Consensus 353 Q~AdtVIi~D~p-WNP~~~eQAiGRIhRIGQkkeV 386 (1179)
++|||+|+-+-+ +--++.-|--||++|-.++.-+
T Consensus 872 PnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYA 906 (1139)
T COG1197 872 PNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYA 906 (1139)
T ss_pred CCCceEEEeccccccHHHHHHhccccCCccceEEE
Confidence 999999998776 5788999999999997665444
No 145
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.77 E-value=1.1e-07 Score=118.93 Aligned_cols=112 Identities=22% Similarity=0.250 Sum_probs=101.3
Q ss_pred cCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhh
Q 001037 266 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 345 (1179)
Q Consensus 266 SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~A 345 (1179)
.+++..|...|..+...|.+|||||.....++.|...|...|+++..++|.++..+|..++..|+. +.+. +|++|..
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~--g~i~-vlV~t~~ 505 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRL--GEFD-VLVGINL 505 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHc--CCce-EEEEeCH
Confidence 467888888888888899999999999999999999999999999999999999999999999984 4444 5778899
Q ss_pred hccCCCCcccceeeecCC-----CCCcchHHHHhhccccc
Q 001037 346 AGRGLNLQSADTVIIYDP-----DPNPKNEEQAVARAHRI 380 (1179)
Q Consensus 346 GgeGLNLQ~AdtVIi~D~-----pWNP~~~eQAiGRIhRI 380 (1179)
+++|++++.++.||++|. +-++..+.|++||++|-
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~ 545 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC
Confidence 999999999999999996 45889999999999994
No 146
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.76 E-value=1.4e-07 Score=107.24 Aligned_cols=203 Identities=20% Similarity=0.266 Sum_probs=117.5
Q ss_pred EEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhh-------HHHHHHHHHHHHHHHHHHcCCCCCCCCccc-
Q 001037 184 SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIY-------QAKVYKTLNNRCMELRKTCNHPLLNYPYFS- 255 (1179)
Q Consensus 184 e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~-------~~~~~~sL~~~l~~LRkicnhP~L~~~~l~- 255 (1179)
++.+.++|+..|+.+|+.+.......+... +...... .......+...+.+|+.+|+||+|....+.
T Consensus 5 ~y~lP~pmt~~QKdl~e~iislh~~~il~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mP 79 (297)
T PF11496_consen 5 EYYLPTPMTSFQKDLYEQIISLHYSDILKF-----CETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMP 79 (297)
T ss_dssp EEEEEE---HHHHHHHHHHHHHTHHHHHHH-----HHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--
T ss_pred eEEEecCccHHHHHHHHHHHHHHHHHHHHH-----HcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCc
Confidence 678899999999999998876543222111 1111000 012336677778899999999999655432
Q ss_pred -----ccchhhhhcccCHHHHHHHHHHHH-----hhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHH
Q 001037 256 -----DLSKDFLVKSCGKLWILDRILIKL-----QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 325 (1179)
Q Consensus 256 -----~l~~~~lv~~SgKl~~L~~IL~el-----~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~i 325 (1179)
..........|+||.+|.++|..+ ...+.++||.++...++++|+.+|..+++.|-++.|..-.++....
T Consensus 80 k~ll~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~ 159 (297)
T PF11496_consen 80 KQLLLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKV 159 (297)
T ss_dssp S-S-STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S
T ss_pred cccccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccC
Confidence 223455678899999999999999 6667899999999999999999999999999999997654443322
Q ss_pred H------------HHh-ccCCCCccEEeeehhhhccC----CCCcccceeeecCCCCCcchHHHHhhcc-cccCCcceEE
Q 001037 326 I------------VDF-NSHDSDCFIFLLSIRAAGRG----LNLQSADTVIIYDPDPNPKNEEQAVARA-HRIGQKREVK 387 (1179)
Q Consensus 326 I------------~~F-n~~ds~i~VLLlST~AGgeG----LNLQ~AdtVIi~D~pWNP~~~eQAiGRI-hRIGQkkeV~ 387 (1179)
- ... ......+.|+|++++-.... ++-...|.||-||+.+++....-..-|. +|-+ +.+-
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~--~~~P 237 (297)
T PF11496_consen 160 PKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN--RLCP 237 (297)
T ss_dssp ----------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH---------S--
T ss_pred CcccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC--CCCc
Confidence 2 011 11234566777776655441 3333689999999999988765444444 4433 7788
Q ss_pred EEEEEe
Q 001037 388 VIYMEA 393 (1179)
Q Consensus 388 VyrLva 393 (1179)
|++|+.
T Consensus 238 iirLv~ 243 (297)
T PF11496_consen 238 IIRLVP 243 (297)
T ss_dssp EEEEEE
T ss_pred EEEEee
Confidence 999987
No 147
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.75 E-value=1.4e-07 Score=120.30 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=99.7
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeec
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY 361 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~ 361 (1179)
.+.-.||||......+.+...|...|+....++.+++..+|..+...|..+ +++| ++.|=|.|.|||-.+..-||+|
T Consensus 484 ~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~--~~~V-ivATVAFGMGIdK~DVR~ViH~ 560 (941)
T KOG0351|consen 484 PDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSD--KIRV-IVATVAFGMGIDKPDVRFVIHY 560 (941)
T ss_pred CCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcC--CCeE-EEEEeeccCCCCCCceeEEEEC
Confidence 456789999999999999999999999999999999999999999999953 4554 7778999999999999999999
Q ss_pred CCCCCcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 362 DPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 362 D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
.+|-+-.-|-|-.|||+|-|+...+..||=..
T Consensus 561 ~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 561 SLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred CCchhHHHHHHhccccCcCCCcceeEEecchh
Confidence 99999999999999999999999988777543
No 148
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.74 E-value=6.1e-08 Score=113.61 Aligned_cols=121 Identities=23% Similarity=0.407 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhh--cCCeEEEeehhHHHHHHHHHHHHH----------------------cCCeEEEEcCCCCHHHHH
Q 001037 268 KLWILDRILIKLQR--TGHRVLLFSTMTKLLDILEEYLQW----------------------RQLVYRRIDGTTSLEDRE 323 (1179)
Q Consensus 268 Kl~~L~~IL~el~~--~g~KVLIFSqft~~ldiLe~~L~~----------------------~Gi~~~rIdGsts~eeRe 323 (1179)
.+.+|..+|..... ...|+|||....+.++.=.+.|.. .+.++.+++|+|.+++|.
T Consensus 408 RLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRt 487 (708)
T KOG0348|consen 408 RLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERT 487 (708)
T ss_pred hHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHH
Confidence 45566677766543 456889998777777665555532 145799999999999999
Q ss_pred HHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEE
Q 001037 324 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 391 (1179)
Q Consensus 324 ~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrL 391 (1179)
..+..|..... .+|+||++++.||||+....||-||+|..+..|..|+||..|+|-+-....|.+
T Consensus 488 s~f~~Fs~~~~---~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~ 552 (708)
T KOG0348|consen 488 SVFQEFSHSRR---AVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLL 552 (708)
T ss_pred HHHHhhccccc---eEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEec
Confidence 99999986333 378999999999999999999999999999999999999999999888644433
No 149
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.71 E-value=3.4e-07 Score=108.26 Aligned_cols=106 Identities=16% Similarity=0.188 Sum_probs=89.8
Q ss_pred CeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeee---
Q 001037 284 HRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII--- 360 (1179)
Q Consensus 284 ~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi--- 360 (1179)
-++||||..+.-...|+.+|..+|++...++++++-.+|..+-..|.+..- . .+++|.|.+-|+++++ +.|||
T Consensus 441 GQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l--~-~VVTTAAL~AGVDFPA-SQVIFEsL 516 (830)
T COG1202 441 GQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQEL--A-AVVTTAALAAGVDFPA-SQVIFESL 516 (830)
T ss_pred CceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCc--c-eEeehhhhhcCCCCch-HHHHHHHH
Confidence 368999999999999999999999999999999999999999999995443 3 5889999999999985 44544
Q ss_pred -cCCCC-CcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 361 -YDPDP-NPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 361 -~D~pW-NP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
+...| +|..+.|..||++|.+=...-.||.++-
T Consensus 517 aMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllve 551 (830)
T COG1202 517 AMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVE 551 (830)
T ss_pred HcccccCCHHHHHHHhcccCCCCcccCceEEEEec
Confidence 44556 9999999999999998766656676643
No 150
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.71 E-value=1.7e-07 Score=122.37 Aligned_cols=104 Identities=16% Similarity=0.124 Sum_probs=83.5
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHcCCe---EEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCccccee
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWRQLV---YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 358 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~Gi~---~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtV 358 (1179)
....+|||+.....++.+.+.|...++. ++.++|+++.++|..++..+ +..+ +|++|.+++.||++.+.++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~----g~rk-IIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH----SGRR-IVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc----CCee-EEEeccHHhhccccCcceEE
Confidence 3468999999999999999999988765 67889999999999876643 2334 68899999999999999999
Q ss_pred eecC---------------CCCCc---chHHHHhhcccccCCcceEEEEEEEe
Q 001037 359 IIYD---------------PDPNP---KNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 359 Ii~D---------------~pWNP---~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
|.++ ++-.| ..+.||.||++|.+ +=.+|+|++
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyt 409 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYS 409 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCC
Confidence 9985 33333 57899999999983 334566655
No 151
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.69 E-value=4.8e-08 Score=111.93 Aligned_cols=115 Identities=23% Similarity=0.236 Sum_probs=101.6
Q ss_pred CHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhh
Q 001037 267 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 346 (1179)
Q Consensus 267 gKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AG 346 (1179)
.|..+|..++..... .++.+||+.....++++...|...|+....+.|++..+-|...+.+|+..... +|+.|++|
T Consensus 246 ~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~---~lvvTdva 321 (529)
T KOG0337|consen 246 EKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTS---ILVVTDVA 321 (529)
T ss_pred HHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccc---eEEEehhh
Confidence 466677777766543 56899999999999999999999999999999999999999999999964444 68888999
Q ss_pred ccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcce
Q 001037 347 GRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 385 (1179)
Q Consensus 347 geGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkke 385 (1179)
+.|++++--++||+||.|-.+..+..|+||+.|.|.+-.
T Consensus 322 aRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~ 360 (529)
T KOG0337|consen 322 ARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGR 360 (529)
T ss_pred hccCCCccccccccccCCCCCceEEEEecchhhccccce
Confidence 999999999999999999999999999999999997643
No 152
>PRK14701 reverse gyrase; Provisional
Probab=98.67 E-value=4.2e-07 Score=122.31 Aligned_cols=102 Identities=18% Similarity=0.266 Sum_probs=80.5
Q ss_pred HHHHHHHHHhhcCCeEEEeehhHHH---HHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeeh----
Q 001037 271 ILDRILIKLQRTGHRVLLFSTMTKL---LDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI---- 343 (1179)
Q Consensus 271 ~L~~IL~el~~~g~KVLIFSqft~~---ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST---- 343 (1179)
.|.++|..+ +..+||||+.... ++.|..+|...|+++..++|+ |...+++|.+ +++.| |++|
T Consensus 321 ~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~--G~~~V-LVaT~s~~ 389 (1638)
T PRK14701 321 HVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEE--GEIDY-LIGVATYY 389 (1638)
T ss_pred HHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHc--CCCCE-EEEecCCC
Confidence 444555543 5789999987654 589999999999999999994 8899999995 45566 5555
Q ss_pred hhhccCCCCcc-cceeeecCCCC---CcchHHH-------------HhhcccccCCc
Q 001037 344 RAAGRGLNLQS-ADTVIIYDPDP---NPKNEEQ-------------AVARAHRIGQK 383 (1179)
Q Consensus 344 ~AGgeGLNLQ~-AdtVIi~D~pW---NP~~~eQ-------------AiGRIhRIGQk 383 (1179)
++++.|||++. ..+|||||+|- |...+.| .+||+.|-|..
T Consensus 390 gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 390 GTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred CeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 58999999997 99999999998 5554444 45999998865
No 153
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.63 E-value=4.4e-07 Score=118.87 Aligned_cols=104 Identities=15% Similarity=0.108 Sum_probs=83.7
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHcC---CeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCccccee
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWRQ---LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 358 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~G---i~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtV 358 (1179)
....+|||+.-...++.+.+.|...+ +.++.++|.++.++|..++..+ +. +-||++|.++..||++....+|
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~----~~-rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH----SG-RRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC----CC-ceEEEeccHHHhccccCCeeEE
Confidence 34689999999999999999998764 4588899999999999875443 22 3368889999999999999999
Q ss_pred eecCCC----C--------------CcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 359 IIYDPD----P--------------NPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 359 Ii~D~p----W--------------NP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
|.++.. | +-..+.||.||++|.| +-.+|+|.+
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyt 402 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYS 402 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecC
Confidence 998743 1 3357899999999998 445677765
No 154
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.63 E-value=1.5e-07 Score=112.02 Aligned_cols=119 Identities=22% Similarity=0.329 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHH-HHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhh
Q 001037 267 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL-QWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 345 (1179)
Q Consensus 267 gKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L-~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~A 345 (1179)
+|+.++.+++.... .-.+|||.|..+.+..|...| ..-++.+..|+|..++.+|...+++|+. +.+- +|++|+.
T Consensus 373 ~K~lA~rq~v~~g~--~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~--g~Iw-vLicTdl 447 (593)
T KOG0344|consen 373 GKLLALRQLVASGF--KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI--GKIW-VLICTDL 447 (593)
T ss_pred hHHHHHHHHHhccC--CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc--cCee-EEEehhh
Confidence 67777777777653 457999999999999999999 7889999999999999999999999995 4444 5888999
Q ss_pred hccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEE
Q 001037 346 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 390 (1179)
Q Consensus 346 GgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~Vyr 390 (1179)
.+.||+|++++.||+||.|-.-..|+.|+||++|.|+......||
T Consensus 448 l~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfy 492 (593)
T KOG0344|consen 448 LARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFY 492 (593)
T ss_pred hhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEe
Confidence 999999999999999999999999999999999999987754444
No 155
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=7.5e-08 Score=109.83 Aligned_cols=111 Identities=23% Similarity=0.357 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhc
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 347 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGg 347 (1179)
|+..|.++.. +-...+|||+...-++.|...|..+++....++|.+...+|..++..|+.+.+. +|++|...+
T Consensus 252 k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssr---vlIttdl~a 324 (397)
T KOG0327|consen 252 KLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSR---VLITTDLLA 324 (397)
T ss_pred cccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCce---EEeeccccc
Confidence 8888888887 345789999999999999999999999999999999999999999999975554 688999999
Q ss_pred cCCCCcccceeeecCCCCCcchHHHHhhcccccCCcce
Q 001037 348 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 385 (1179)
Q Consensus 348 eGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkke 385 (1179)
.|+++|.++.||+||+|-|...|..|+||++|.|-+--
T Consensus 325 rgidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~ 362 (397)
T KOG0327|consen 325 RGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGV 362 (397)
T ss_pred cccchhhcceeeeeccccchhhhhhhcccccccCCCce
Confidence 99999999999999999999999999999999997654
No 156
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.54 E-value=3.9e-07 Score=115.09 Aligned_cols=129 Identities=19% Similarity=0.282 Sum_probs=109.6
Q ss_pred cCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhh
Q 001037 266 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 345 (1179)
Q Consensus 266 SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~A 345 (1179)
..|+.+|...+..+...|..|||||......+.|...|...|+++..|++ ...+|+..|..|....+. ++++|..
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~---VtIATNM 655 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGA---VTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCe---EEEeccC
Confidence 35899999999888889999999999999999999999999999999997 567999999999854433 6889999
Q ss_pred hccCCCCcccc--------eeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeehhhhhhh
Q 001037 346 AGRGLNLQSAD--------TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSH 401 (1179)
Q Consensus 346 GgeGLNLQ~Ad--------tVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~I~~~ 401 (1179)
+|+|+++.-.. +||.++.+-+...+.|++||++|.|..-.. ..|++.++.++..
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS--~ffvSleD~Lmr~ 717 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGES--VFYVSLEDELMRL 717 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcce--EEEechhHHHHHh
Confidence 99999998433 348889999999999999999999998876 3344566666543
No 157
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=98.49 E-value=9.2e-07 Score=102.12 Aligned_cols=121 Identities=17% Similarity=0.161 Sum_probs=101.1
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehh
Q 001037 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 344 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~ 344 (1179)
.-.|+..|..+|+--. -..|.|||.+..+..-.|.-+|+..||+.|+++|.++...|.-+|++||. +-|.++++ |+
T Consensus 251 e~DKflllyallKL~L-I~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNk--G~YdivIA-tD 326 (569)
T KOG0346|consen 251 EEDKFLLLYALLKLRL-IRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNK--GLYDIVIA-TD 326 (569)
T ss_pred cchhHHHHHHHHHHHH-hcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhC--cceeEEEE-cc
Confidence 3458877777776322 34589999999999999999999999999999999999999999999994 45555444 45
Q ss_pred --------------------------h---------hccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEE
Q 001037 345 --------------------------A---------AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 389 (1179)
Q Consensus 345 --------------------------A---------GgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~Vy 389 (1179)
+ .+.||+++..++||+||.|-++..|+.|+||..|-|.+..+.-+
T Consensus 327 ~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSf 406 (569)
T KOG0346|consen 327 DSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSF 406 (569)
T ss_pred CccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEE
Confidence 1 24799999999999999999999999999999999888776443
No 158
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.47 E-value=3.3e-06 Score=107.27 Aligned_cols=78 Identities=17% Similarity=0.103 Sum_probs=51.3
Q ss_pred CCCCEEEEcHHHHHhch--hhhccCCccEEEEcCCccCCChhhHHHHHHHhh----cCCcEEEEeccCCCC--ChHHHHH
Q 001037 38 LKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY----RCQRRLLLTGTPLQN--DLKELWS 109 (1179)
Q Consensus 38 ~~~dVVITTYE~L~~d~--~~L~ki~wdlVIIDEAHriKN~~Sk~tkaL~~L----ka~~RLLLTGTPiqN--~l~EL~s 109 (1179)
..-.|+++|...+..|. ..+.--.+..|||||||++.. ++.-+-.+..+ +..++.++|+.|-.- ....+-.
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~-~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~ 84 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIE-SSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLET 84 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccc-cccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHH
Confidence 34589999999999873 223333678999999999953 33333333434 456789999999763 3445555
Q ss_pred HHhhhcC
Q 001037 110 LLNLLLP 116 (1179)
Q Consensus 110 LL~fL~P 116 (1179)
++.-|..
T Consensus 85 vmk~L~i 91 (814)
T TIGR00596 85 KMRNLFL 91 (814)
T ss_pred HHHHhCc
Confidence 5555533
No 159
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.47 E-value=3e-06 Score=97.44 Aligned_cols=103 Identities=14% Similarity=0.185 Sum_probs=95.5
Q ss_pred EEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCC
Q 001037 286 VLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP 365 (1179)
Q Consensus 286 VLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pW 365 (1179)
-||||..++..+.+...|...||....++.+....+|..+.+.|-+++-+ +|+.|-+.|.|++-.....||+++++-
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P---vI~AT~SFGMGVDKp~VRFViHW~~~q 334 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP---VIAATVSFGMGVDKPDVRFVIHWSPSQ 334 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC---EEEEEeccccccCCcceeEEEecCchh
Confidence 48999999999999999999999999999999999999999999854444 578889999999999999999999999
Q ss_pred CcchHHHHhhcccccCCcceEEEEEE
Q 001037 366 NPKNEEQAVARAHRIGQKREVKVIYM 391 (1179)
Q Consensus 366 NP~~~eQAiGRIhRIGQkkeV~VyrL 391 (1179)
|-+-|-|--||++|-|-..-++.||-
T Consensus 335 n~AgYYQESGRAGRDGk~SyCRLYYs 360 (641)
T KOG0352|consen 335 NLAGYYQESGRAGRDGKRSYCRLYYS 360 (641)
T ss_pred hhHHHHHhccccccCCCccceeeeec
Confidence 99999999999999999999998875
No 160
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.45 E-value=1.2e-05 Score=90.92 Aligned_cols=116 Identities=17% Similarity=0.247 Sum_probs=91.7
Q ss_pred HHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHc-C-CeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhcc
Q 001037 271 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-Q-LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348 (1179)
Q Consensus 271 ~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~-G-i~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGge 348 (1179)
+|.++|++...+|.-++||.....+++.+...|+.. + .....++..+ ..|.+.+++|++ +.+. +|++|.....
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~--G~~~-lLiTTTILER 367 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRD--GKIT-LLITTTILER 367 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHc--CceE-EEEEeehhhc
Confidence 678889998899999999999999999999999543 3 2334555554 589999999995 4444 6889999999
Q ss_pred CCCCcccceeeecCCC--CCcchHHHHhhcccccCCc--ceEEEEEE
Q 001037 349 GLNLQSADTVIIYDPD--PNPKNEEQAVARAHRIGQK--REVKVIYM 391 (1179)
Q Consensus 349 GLNLQ~AdtVIi~D~p--WNP~~~eQAiGRIhRIGQk--keV~VyrL 391 (1179)
|++++..+..|+=.-. ++-+...|--||++|---. -.|.++.+
T Consensus 368 GVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 368 GVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred ccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 9999999999886555 8899999999999996433 33444443
No 161
>COG4889 Predicted helicase [General function prediction only]
Probab=98.43 E-value=4.3e-07 Score=110.83 Aligned_cols=104 Identities=23% Similarity=0.362 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHhcc-CCCCccEEeeehhhhccCCCCcccceeeecCCCC
Q 001037 291 TMTKLLDILEEYLQWR----QLVYRRIDGTTSLEDRESAIVDFNS-HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP 365 (1179)
Q Consensus 291 qft~~ldiLe~~L~~~----Gi~~~rIdGsts~eeRe~iI~~Fn~-~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pW 365 (1179)
+|..+++.....|... .+.+--++|.|..-+|..++..-+. +...|+| |-..++++||+++++-|-||||||--
T Consensus 479 sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckI-lSNaRcLSEGVDVPaLDsViFf~pr~ 557 (1518)
T COG4889 479 SFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKI-LSNARCLSEGVDVPALDSVIFFDPRS 557 (1518)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchhee-eccchhhhcCCCccccceEEEecCch
Confidence 3444444444334332 3445668999999999766655443 3445665 88899999999999999999999998
Q ss_pred CcchHHHHhhcccccCCcce-EEEEEEEeeh
Q 001037 366 NPKNEEQAVARAHRIGQKRE-VKVIYMEAVV 395 (1179)
Q Consensus 366 NP~~~eQAiGRIhRIGQkke-V~VyrLvaVE 395 (1179)
.-....|++||+-|.--.|. -+|+.-++++
T Consensus 558 smVDIVQaVGRVMRKa~gK~yGYIILPIalp 588 (1518)
T COG4889 558 SMVDIVQAVGRVMRKAKGKKYGYIILPIALP 588 (1518)
T ss_pred hHHHHHHHHHHHHHhCcCCccceEEEEeccC
Confidence 88999999999999765544 3444444544
No 162
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.42 E-value=1.3e-07 Score=116.22 Aligned_cols=104 Identities=16% Similarity=0.208 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhh
Q 001037 876 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 955 (1179)
Q Consensus 876 ~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~n 955 (1179)
......-++++..|+++-+ +-.|++...+.+.||||++ |..||||++|+.+|+...|..+.+|++|+..+|.|
T Consensus 605 ~~~~s~~~~il~~l~~h~~------awPf~~Pv~~~e~pdyy~~-I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~n 677 (720)
T KOG1472|consen 605 GKLFSAIQNILDQLQNHGD------AWPFLKPVNKKEVPDYYDV-IKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFAN 677 (720)
T ss_pred chhhHHHHhHHhhhhcCCc------cCCccCccccccCCcHHHH-hcccccHHHHhhhccccchhhHHHHHHHHHHHHhh
Confidence 3456667788888887655 5689999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCChHHHHHHHHHHHHHHHHHhhhcC
Q 001037 956 AMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 986 (1179)
Q Consensus 956 a~~y~~~~se~~~~A~~l~~~f~~~~~~~~~ 986 (1179)
|.-||+..++.|++|.+|..+|+..|+-.++
T Consensus 678 cr~yn~~~~~y~k~~~~le~~~~~k~~~~i~ 708 (720)
T KOG1472|consen 678 CRMYNGSDTQYYKCAQALEKFFLFKLNELIL 708 (720)
T ss_pred hhccCCccchheecccchhhhhcchhhhhhh
Confidence 9999999999999999999999999987654
No 163
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.30 E-value=2.1e-05 Score=98.75 Aligned_cols=103 Identities=18% Similarity=0.106 Sum_probs=71.6
Q ss_pred hhcCCeEEEeehhHHHHHHHHHHHHHc----CCe-------------------EEEEcCCCCHHHHHHHHHHhccCCCCc
Q 001037 280 QRTGHRVLLFSTMTKLLDILEEYLQWR----QLV-------------------YRRIDGTTSLEDRESAIVDFNSHDSDC 336 (1179)
Q Consensus 280 ~~~g~KVLIFSqft~~ldiLe~~L~~~----Gi~-------------------~~rIdGsts~eeRe~iI~~Fn~~ds~i 336 (1179)
..+|+.|+||+..+...--.+..|... |.. ...-+.++.-.+|.-.-+.|.. +.+
T Consensus 346 ~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~--G~i 423 (1230)
T KOG0952|consen 346 LQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKE--GHI 423 (1230)
T ss_pred HHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhc--CCc
Confidence 356888888887665444444444322 221 2233556777888888888984 455
Q ss_pred cEEeeehhhhccCCCCcccceeeecCCCCCcch----------HHHHhhcccccCCcce
Q 001037 337 FIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN----------EEQAVARAHRIGQKRE 385 (1179)
Q Consensus 337 ~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~----------~eQAiGRIhRIGQkke 385 (1179)
+ +|++|...+.|+||++-..||-=..-|++.. ..|-.|||+|..=.+.
T Consensus 424 ~-vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~ 481 (1230)
T KOG0952|consen 424 K-VLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSS 481 (1230)
T ss_pred e-EEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCC
Confidence 5 4889999999999998777776666677665 6899999999865444
No 164
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.20 E-value=2.6e-06 Score=97.88 Aligned_cols=95 Identities=19% Similarity=0.318 Sum_probs=86.3
Q ss_pred CCeEEEeehhHHHHHHHHHHHHHcC---CeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceee
Q 001037 283 GHRVLLFSTMTKLLDILEEYLQWRQ---LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 359 (1179)
Q Consensus 283 g~KVLIFSqft~~ldiLe~~L~~~G---i~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVI 359 (1179)
-.|.||||....-.+-|++++.++| +.++.++|...+.+|.+.++.|...+-. ||++|++++.||+++....+|
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk---flictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK---FLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeE---EEEEehhhhccccccCCceEE
Confidence 4689999999999999999998874 6788999999999999999999965443 899999999999999999999
Q ss_pred ecCCCCCcchHHHHhhccccc
Q 001037 360 IYDPDPNPKNEEQAVARAHRI 380 (1179)
Q Consensus 360 i~D~pWNP~~~eQAiGRIhRI 380 (1179)
+..+|-.-..|..||||++|.
T Consensus 582 nvtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EEecCcccchhhhhhhccchh
Confidence 999999999999999998874
No 165
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.20 E-value=3.9e-06 Score=81.24 Aligned_cols=95 Identities=21% Similarity=0.274 Sum_probs=65.3
Q ss_pred hhHHHHHHHHcC-CCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchhhh--ccCCccEEEEcCCccCCChhh
Q 001037 2 SMWQSELHKWLP-SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKL--SKVDWKYIIIDEAQRMKDRES 78 (1179)
Q Consensus 2 sQW~~Ef~Kw~P-~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~~L--~ki~wdlVIIDEAHriKN~~S 78 (1179)
.+|...+.+|.. ...+.++.+........ .......+|+|+||+.+....... ....|++|||||+|.+.+...
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~ 120 (144)
T cd00046 44 NQVAERLKELFGEGIKVGYLIGGTSIKQQE---KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGF 120 (144)
T ss_pred HHHHHHHHHHhhCCcEEEEEecCcchhHHH---HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcch
Confidence 466777888875 56666666654443322 122457899999999888754332 344799999999999987654
Q ss_pred HHH---HHHHhhcCCcEEEEeccC
Q 001037 79 VLA---RDLDRYRCQRRLLLTGTP 99 (1179)
Q Consensus 79 k~t---kaL~~Lka~~RLLLTGTP 99 (1179)
... .........++++|||||
T Consensus 121 ~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 121 GLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHHHHHHhhCCccceEEEEeccC
Confidence 443 223334678899999998
No 166
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.19 E-value=0.00016 Score=89.91 Aligned_cols=131 Identities=17% Similarity=0.153 Sum_probs=105.3
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehh
Q 001037 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 344 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~ 344 (1179)
...|+.++.+-+.++...|.-|||.|......+.|...|...|+++..++.... ++-..+|.+=-. ..-+-++|.
T Consensus 409 ~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~AG~----~gaVTIATN 483 (764)
T PRK12326 409 AAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEAGK----YGAVTVSTQ 483 (764)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhcCC----CCcEEEEec
Confidence 346888888888888899999999999999999999999999999999998754 333455655332 223688899
Q ss_pred hhccCCCCcc---------------cceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeehhhhhhhh
Q 001037 345 AAGRGLNLQS---------------ADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQ 402 (1179)
Q Consensus 345 AGgeGLNLQ~---------------AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~I~~~q 402 (1179)
.+|.|.++.- .=+||....+-|-..+.|..||++|.|..-...+| +++|+.++..-
T Consensus 484 MAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~--lSleDdl~~~f 554 (764)
T PRK12326 484 MAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF--VSLEDDVVAAN 554 (764)
T ss_pred CCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE--EEcchhHHHhc
Confidence 9999988663 34888889999999999999999999998886544 45677776543
No 167
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.05 E-value=0.00028 Score=89.02 Aligned_cols=130 Identities=16% Similarity=0.214 Sum_probs=104.4
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHH-HHHHHhccCCCCccEEeee
Q 001037 264 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE-SAIVDFNSHDSDCFIFLLS 342 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe-~iI~~Fn~~ds~i~VLLlS 342 (1179)
....|+.++..-+.++...|.-|||.|......+.|...|...|+++-+++.... +++ .+|.+ .+...-+.++
T Consensus 407 t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa~----AG~~GaVTIA 480 (925)
T PRK12903 407 TKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIAK----AGQKGAITIA 480 (925)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHHh----CCCCCeEEEe
Confidence 3457888988888888889999999999999999999999999999999998643 333 34442 2222347888
Q ss_pred hhhhccCCCCcccc--------eeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeehhhhhhh
Q 001037 343 IRAAGRGLNLQSAD--------TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSH 401 (1179)
Q Consensus 343 T~AGgeGLNLQ~Ad--------tVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~I~~~ 401 (1179)
|..+|+|.++.-.. +||..+.+-|-..+.|..||++|.|..-...+| +++|+.++..
T Consensus 481 TNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~--lSLeD~L~r~ 545 (925)
T PRK12903 481 TNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF--ISLDDQLFRR 545 (925)
T ss_pred cccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE--EecchHHHHH
Confidence 99999999987544 899999999999999999999999998876544 3467766643
No 168
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=97.99 E-value=0.00011 Score=89.92 Aligned_cols=64 Identities=25% Similarity=0.363 Sum_probs=50.5
Q ss_pred HHhccCCCCccEEeeehhhhccCCCCccccee--------eecCCCCCcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 327 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV--------IIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 327 ~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtV--------Ii~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
++|- +++-.|-|+| .|++-||.||.-.+| |-+++||+..+-+|-.||.||-.|.+...++.|++
T Consensus 851 qrFM--~GeK~vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIs 922 (1300)
T KOG1513|consen 851 QRFM--DGEKLVAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLIS 922 (1300)
T ss_pred hhhc--cccceeeeee-hhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEeh
Confidence 4676 4444566776 999999999975444 56899999999999999999999998766666654
No 169
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.99 E-value=1e-05 Score=83.59 Aligned_cols=97 Identities=25% Similarity=0.333 Sum_probs=61.1
Q ss_pred hhHHHHHHHHcCCCcEEEEEcCh---h-------HHhHHHhhHhhhCCCCEEEEcHHHHHhchhh-------------hc
Q 001037 2 SMWQSELHKWLPSVSCIYYVGAK---D-------QRSRLFSQEVAALKFNVLVTTYEFIMYDRSK-------------LS 58 (1179)
Q Consensus 2 sQW~~Ef~Kw~P~l~Vvvy~G~~---~-------~R~~l~~~~~~~~~~dVVITTYE~L~~d~~~-------------L~ 58 (1179)
.||.++|..+.+........... . ...............++++++|+.+...... +.
T Consensus 64 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 143 (184)
T PF04851_consen 64 EQWYDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLL 143 (184)
T ss_dssp HHHHHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGG
T ss_pred HHHHHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhc
Confidence 68999998888665444322110 0 0000011123345789999999998876322 23
Q ss_pred cCCccEEEEcCCccCCChhhHHHHHHHhhcCCcEEEEeccCC
Q 001037 59 KVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPL 100 (1179)
Q Consensus 59 ki~wdlVIIDEAHriKN~~Sk~tkaL~~Lka~~RLLLTGTPi 100 (1179)
...+++||+||||++.+... ++.+..+...++|+|||||.
T Consensus 144 ~~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 144 KNKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp GGSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred cccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 34789999999999854332 56665678889999999995
No 170
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=97.99 E-value=5.2e-06 Score=81.60 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=39.2
Q ss_pred CccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhhhcCCC
Q 001037 923 NILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFS 963 (1179)
Q Consensus 923 ~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~y~~~~ 963 (1179)
-||||.+|++||.++.|.+..+|++||.||++||++||.++
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 47999999999999999999999999999999999999875
No 171
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.98 E-value=0.00056 Score=87.07 Aligned_cols=131 Identities=15% Similarity=0.140 Sum_probs=103.9
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeeh
Q 001037 264 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 343 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST 343 (1179)
....|+.++.+-+..+...|.-|||-|......+.|...|...|+++-+|+.... +.-..+|.+=- ...-+-++|
T Consensus 430 t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa~AG----~~GaVTIAT 504 (913)
T PRK13103 430 TAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIAQAG----RPGALTIAT 504 (913)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHHcCC----CCCcEEEec
Confidence 3457899998889999999999999999999999999999999999988887643 33334555322 222367888
Q ss_pred hhhccCCCCc-------------------------------------ccceeeecCCCCCcchHHHHhhcccccCCcceE
Q 001037 344 RAAGRGLNLQ-------------------------------------SADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 386 (1179)
Q Consensus 344 ~AGgeGLNLQ-------------------------------------~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV 386 (1179)
..+|+|.|+. +.=+||.-..+-|-..+.|..||++|.|..-..
T Consensus 505 NMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS 584 (913)
T PRK13103 505 NMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSS 584 (913)
T ss_pred cCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 9999998875 234788889999999999999999999998886
Q ss_pred EEEEEEeehhhhhhh
Q 001037 387 KVIYMEAVVDKISSH 401 (1179)
Q Consensus 387 ~VyrLvaVEE~I~~~ 401 (1179)
.+| +++|+.++..
T Consensus 585 ~f~--lSlED~Lmr~ 597 (913)
T PRK13103 585 RFY--LSLEDSLMRI 597 (913)
T ss_pred EEE--EEcCcHHHHh
Confidence 544 3457777654
No 172
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=97.97 E-value=0.00049 Score=86.22 Aligned_cols=79 Identities=22% Similarity=0.169 Sum_probs=54.8
Q ss_pred EEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCC---------CCCcchHHHHhhcccccC
Q 001037 311 RRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP---------DPNPKNEEQAVARAHRIG 381 (1179)
Q Consensus 311 ~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~---------pWNP~~~eQAiGRIhRIG 381 (1179)
++-+|+.=+=-++-+---|+. +=++ +|++|...+.|+|+++ .+|||-.+ .-+|..|.|.-|||+|-|
T Consensus 634 aVHH~GlLPivKE~VE~LFqr--GlVK-VLFATETFAMGVNMPA-RtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRG 709 (1248)
T KOG0947|consen 634 AVHHGGLLPIVKEVVELLFQR--GLVK-VLFATETFAMGVNMPA-RTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRG 709 (1248)
T ss_pred hhhcccchHHHHHHHHHHHhc--CceE-EEeehhhhhhhcCCCc-eeEEeeehhhccCcceeecCChhHHhhhccccccc
Confidence 345666554444445556773 4455 5888899999999984 55555443 358999999999999999
Q ss_pred CcceEEEEEEEe
Q 001037 382 QKREVKVIYMEA 393 (1179)
Q Consensus 382 QkkeV~VyrLva 393 (1179)
-...-+|+.++.
T Consensus 710 lD~tGTVii~~~ 721 (1248)
T KOG0947|consen 710 LDETGTVIIMCK 721 (1248)
T ss_pred cCcCceEEEEec
Confidence 877655555543
No 173
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.96 E-value=2.2e-05 Score=80.86 Aligned_cols=106 Identities=27% Similarity=0.307 Sum_probs=68.8
Q ss_pred hhHHHHHHHHcCC---CcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchhh--hccCCccEEEEcCCccCCC-
Q 001037 2 SMWQSELHKWLPS---VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD- 75 (1179)
Q Consensus 2 sQW~~Ef~Kw~P~---l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~~--L~ki~wdlVIIDEAHriKN- 75 (1179)
.||..++..+++. ....++.+..... .+ . ......++|+++||+.+...... +....|++|||||+|++.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~-~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~ 144 (201)
T smart00487 68 EQWAEELKKLGPSLGLKVVGLYGGDSKRE-QL-R-KLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG 144 (201)
T ss_pred HHHHHHHHHHhccCCeEEEEEeCCcchHH-HH-H-HHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC
Confidence 5899999999875 3344455543211 11 1 12233459999999999886554 4455788999999999985
Q ss_pred -hhhHHHHHHHhh-cCCcEEEEeccCCCCChHHHHHH
Q 001037 76 -RESVLARDLDRY-RCQRRLLLTGTPLQNDLKELWSL 110 (1179)
Q Consensus 76 -~~Sk~tkaL~~L-ka~~RLLLTGTPiqN~l~EL~sL 110 (1179)
........+..+ ...+++++||||..+.....+.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~ 181 (201)
T smart00487 145 GFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLLELF 181 (201)
T ss_pred CcHHHHHHHHHhCCccceEEEEecCCchhHHHHHHHh
Confidence 333333344444 57889999999975443333333
No 174
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.93 E-value=0.00012 Score=87.00 Aligned_cols=107 Identities=25% Similarity=0.266 Sum_probs=93.4
Q ss_pred HHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCC
Q 001037 271 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGL 350 (1179)
Q Consensus 271 ~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGL 350 (1179)
-|..-+....+.+.||||-+-...+++-|.+||...|+++..+|.....-+|.++|.+.+.+. +. +|+....+.|||
T Consensus 434 DL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~--~D-vLVGINLLREGL 510 (663)
T COG0556 434 DLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE--FD-VLVGINLLREGL 510 (663)
T ss_pred HHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCC--cc-EEEeehhhhccC
Confidence 333333444567899999999999999999999999999999999999999999999999544 33 577889999999
Q ss_pred CCcccceeeecCCCC-----CcchHHHHhhccccc
Q 001037 351 NLQSADTVIIYDPDP-----NPKNEEQAVARAHRI 380 (1179)
Q Consensus 351 NLQ~AdtVIi~D~pW-----NP~~~eQAiGRIhRI 380 (1179)
+|+.+..|.++|-+- +-...+|-||||.|-
T Consensus 511 DiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN 545 (663)
T COG0556 511 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 (663)
T ss_pred CCcceeEEEEeecCccccccccchHHHHHHHHhhc
Confidence 999999999999874 788999999999994
No 175
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.92 E-value=0.0021 Score=82.19 Aligned_cols=130 Identities=15% Similarity=0.192 Sum_probs=103.3
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehh
Q 001037 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 344 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~ 344 (1179)
...|+.++..-+..+...|.-|||-|......+.|...|...|+++..++.... +.-..+|.+=- ....+.++|.
T Consensus 550 ~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~AG----~~g~VTIATN 624 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAGAG----KLGAVTVATN 624 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHhcC----CCCcEEEeec
Confidence 347888888888888889999999999999999999999999999999988643 22234555432 2223688899
Q ss_pred hhccCCCCcc--------cceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeehhhhhhh
Q 001037 345 AAGRGLNLQS--------ADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSH 401 (1179)
Q Consensus 345 AGgeGLNLQ~--------AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~I~~~ 401 (1179)
.+|+|.++.- .=+||.-..+-|...+.|..||++|.|..-...+| +++|+.++..
T Consensus 625 mAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~--lSlEDdL~~~ 687 (970)
T PRK12899 625 MAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF--LSFEDRLMRL 687 (970)
T ss_pred cccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE--EEcchHHHHH
Confidence 9999988663 34788889999999999999999999998876543 4567777654
No 176
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=97.91 E-value=7.6e-05 Score=84.79 Aligned_cols=90 Identities=16% Similarity=0.142 Sum_probs=78.9
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeec
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY 361 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~ 361 (1179)
.|..-||||-...-.+.+...|+.+||....++..+-+++|..+-..|- .+++.| ++.|-+.|.||+-+....||+-
T Consensus 316 ~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~--a~eiqv-ivatvafgmgidkpdvrfvihh 392 (695)
T KOG0353|consen 316 AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWI--AGEIQV-IVATVAFGMGIDKPDVRFVIHH 392 (695)
T ss_pred CCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccc--ccceEE-EEEEeeecccCCCCCeeEEEec
Confidence 4677899998888899999999999999999999999899888888887 456666 6667999999999999999999
Q ss_pred CCCCCcchHHHHh
Q 001037 362 DPDPNPKNEEQAV 374 (1179)
Q Consensus 362 D~pWNP~~~eQAi 374 (1179)
.+|-+-..|-||-
T Consensus 393 sl~ksienyyqas 405 (695)
T KOG0353|consen 393 SLPKSIENYYQAS 405 (695)
T ss_pred ccchhHHHHHHHH
Confidence 9999999999943
No 177
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=97.85 E-value=0.00071 Score=86.43 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=83.2
Q ss_pred HHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccC--CCCccEEeeehhhhccCCCCccc
Q 001037 278 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH--DSDCFIFLLSIRAAGRGLNLQSA 355 (1179)
Q Consensus 278 el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~--ds~i~VLLlST~AGgeGLNLQ~A 355 (1179)
.-...+.+|+|-++.+..+..+...|+..+..++.+|+..+..+|.+.+....+- .... .|+++|++...|+|+. .
T Consensus 435 ~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~-~IvVaTQVIEagvDid-f 512 (733)
T COG1203 435 EEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEG-FIVVATQVIEAGVDID-F 512 (733)
T ss_pred hhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCC-eEEEEeeEEEEEeccc-c
Confidence 3345789999999999999999999999888899999999999999988854421 1222 3688999999999987 4
Q ss_pred ceeeecCCCCCcchHHHHhhcccccCC--cceEEEEE
Q 001037 356 DTVIIYDPDPNPKNEEQAVARAHRIGQ--KREVKVIY 390 (1179)
Q Consensus 356 dtVIi~D~pWNP~~~eQAiGRIhRIGQ--kkeV~Vyr 390 (1179)
|.+| -|+. -....+||.||++|-|- ...+.|+.
T Consensus 513 d~mI-Te~a-PidSLIQR~GRv~R~g~~~~~~~~v~~ 547 (733)
T COG1203 513 DVLI-TELA-PIDSLIQRAGRVNRHGKKENGKIYVYN 547 (733)
T ss_pred Ceee-ecCC-CHHHHHHHHHHHhhcccccCCceeEee
Confidence 5443 2221 24568999999999994 44455543
No 178
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.80 E-value=0.00021 Score=91.22 Aligned_cols=77 Identities=31% Similarity=0.320 Sum_probs=60.2
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeee-----cCCC---C---CcchHHHHhh
Q 001037 307 QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII-----YDPD---P---NPKNEEQAVA 375 (1179)
Q Consensus 307 Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi-----~D~p---W---NP~~~eQAiG 375 (1179)
.+.+.+-+.+++-.+|...-+.|. ++.+.| |+||...+.|+||+ |++||+ |||. | +|....|+.|
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~--~g~iqv-lvstatlawgvnlp-ahtViikgtqvy~pekg~w~elsp~dv~qmlg 682 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFA--DGHIQV-LVSTATLAWGVNLP-AHTVIIKGTQVYDPEKGRWTELSPLDVMQMLG 682 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHh--cCceeE-EEeehhhhhhcCCC-cceEEecCccccCcccCccccCCHHHHHHHHh
Confidence 456778889999999999999998 555665 88999999999998 566664 6664 4 6888999999
Q ss_pred cccccC--CcceEE
Q 001037 376 RAHRIG--QKREVK 387 (1179)
Q Consensus 376 RIhRIG--QkkeV~ 387 (1179)
|++|.+ +..+..
T Consensus 683 ragrp~~D~~gegi 696 (1674)
T KOG0951|consen 683 RAGRPQYDTCGEGI 696 (1674)
T ss_pred hcCCCccCcCCcee
Confidence 999975 444443
No 179
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.61 E-value=0.00026 Score=91.23 Aligned_cols=101 Identities=14% Similarity=0.239 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhh
Q 001037 878 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 957 (1179)
Q Consensus 878 ~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~ 957 (1179)
-++-|+-++.+|+. +|..| +|.....+.++|||++. |.+|||+.+|..++....|.++++|..|+.+|+.||+
T Consensus 566 ~~kLl~~~l~~lq~-kD~~g-----if~~pvd~~e~pdy~~i-ik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~ 638 (1051)
T KOG0955|consen 566 FKKLLQKSLDKLQK-KDSYG-----IFAEPVDPSELPDYIDI-IKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCM 638 (1051)
T ss_pred HHHHHHHHHHHhhc-ccccC-----ceeeccChhhcccHHHH-hcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHH
Confidence 34555555555543 24444 57778899999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHhhhc
Q 001037 958 QFYGFSHEVRSEARKVHDLFFDLLKIAF 985 (1179)
Q Consensus 958 ~y~~~~se~~~~A~~l~~~f~~~~~~~~ 985 (1179)
.||..+.-.|.+|.++.++--..+..+.
T Consensus 639 ~yn~~dtv~~r~av~~~e~~~~~~~~ar 666 (1051)
T KOG0955|consen 639 EYNAKDTVYYRAAVRLRELIKKDFRNAR 666 (1051)
T ss_pred HhhccCeehHhhhHHHHhhhhhHHHhcc
Confidence 9999999999999999988766555543
No 180
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.60 E-value=0.00016 Score=86.20 Aligned_cols=114 Identities=25% Similarity=0.300 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHH--hhcCCeEEEeehhHHHHHHHHHHHHHcCCe-EEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehh
Q 001037 268 KLWILDRILIKL--QRTGHRVLLFSTMTKLLDILEEYLQWRQLV-YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 344 (1179)
Q Consensus 268 Kl~~L~~IL~el--~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~-~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~ 344 (1179)
.+..+..++..+ ...|.=||-|+... +-.+...++++|.. +++|.|+.+++.|.+--..||+++++|.|++ .++
T Consensus 341 pL~v~~~~~~sl~nlk~GDCvV~FSkk~--I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlV-AsD 417 (700)
T KOG0953|consen 341 PLVVEETALGSLSNLKPGDCVVAFSKKD--IFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLV-ASD 417 (700)
T ss_pred cceehhhhhhhhccCCCCCeEEEeehhh--HHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEE-eec
Confidence 344444444444 34678888888642 23344555666555 9999999999999999999999999999855 559
Q ss_pred hhccCCCCcccceeeecCCC---------CCcchHHHHhhcccccCCcce
Q 001037 345 AAGRGLNLQSADTVIIYDPD---------PNPKNEEQAVARAHRIGQKRE 385 (1179)
Q Consensus 345 AGgeGLNLQ~AdtVIi~D~p---------WNP~~~eQAiGRIhRIGQkke 385 (1179)
|.|.||||. .++|||+++- -.-.+..|--|||+|.|.+-+
T Consensus 418 AIGMGLNL~-IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 418 AIGMGLNLN-IRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYP 466 (700)
T ss_pred ccccccccc-eeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCc
Confidence 999999985 6888998875 345567899999999987655
No 181
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.59 E-value=8.2e-05 Score=83.87 Aligned_cols=78 Identities=15% Similarity=0.183 Sum_probs=58.7
Q ss_pred HHHHHhccCCCCccEEeeehhhhccCCCCccc--------ceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEe--
Q 001037 324 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA--------DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA-- 393 (1179)
Q Consensus 324 ~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~A--------dtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLva-- 393 (1179)
...+.|++ +...|+|+| +||+.||+||+- ..-|.+++||+....+|-.||+||-||..+..+..+++
T Consensus 52 ~e~~~F~~--g~k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMD--GEKDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhC--CCceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 46679995 456677776 999999999952 23367899999999999999999999998875555544
Q ss_pred -ehhhhhhhhhh
Q 001037 394 -VVDKISSHQKE 404 (1179)
Q Consensus 394 -VEE~I~~~q~e 404 (1179)
.|.++...+..
T Consensus 129 ~gE~Rfas~va~ 140 (278)
T PF13871_consen 129 PGERRFASTVAR 140 (278)
T ss_pred HHHHHHHHHHHH
Confidence 45555444433
No 182
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.50 E-value=0.0011 Score=72.79 Aligned_cols=47 Identities=30% Similarity=0.454 Sum_probs=44.0
Q ss_pred eeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceE
Q 001037 340 LLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 386 (1179)
Q Consensus 340 LlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV 386 (1179)
|++|...|.|+++...|.||+||.|-.+..|..+.+|++|.|-+.-.
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkgla 348 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA 348 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccce
Confidence 77899999999999999999999999999999999999999977653
No 183
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=97.26 E-value=0.015 Score=73.57 Aligned_cols=99 Identities=19% Similarity=0.148 Sum_probs=69.2
Q ss_pred EcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecC-CCCCcchHHHHhhcccccCCcceEEEEEE
Q 001037 313 IDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD-PDPNPKNEEQAVARAHRIGQKREVKVIYM 391 (1179)
Q Consensus 313 IdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D-~pWNP~~~eQAiGRIhRIGQkkeV~VyrL 391 (1179)
-+.+++...|..+---|+.+. .. +|++|+..+.|||.++-..|+.-| +..||..|-|+-|||+|-|=..--+|+.+
T Consensus 968 HHaglNr~yR~~VEvLFR~g~--L~-VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~Fm 1044 (1330)
T KOG0949|consen 968 HHAGLNRKYRSLVEVLFRQGH--LQ-VLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFM 1044 (1330)
T ss_pred cccccchHHHHHHHHHhhcCc--eE-EEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEE
Confidence 467788889988888998544 34 588899999999998544444444 56899999999999999997666566666
Q ss_pred EeehhhhhhhhhhhhhccCCccc
Q 001037 392 EAVVDKISSHQKEDELRSGGTVD 414 (1179)
Q Consensus 392 vaVEE~I~~~q~ek~~~~~~tv~ 414 (1179)
..--.+|.+.....-.-..|...
T Consensus 1045 giP~~kv~rLlts~L~diqG~~p 1067 (1330)
T KOG0949|consen 1045 GIPRQKVQRLLTSLLPDIQGAYP 1067 (1330)
T ss_pred eCcHHHHHHHHHHhhhcccCCCc
Confidence 44334455444443333344433
No 184
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.16 E-value=0.0026 Score=83.38 Aligned_cols=77 Identities=16% Similarity=0.230 Sum_probs=54.9
Q ss_pred HHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccC-C-cceEEEEEEEeehhh
Q 001037 320 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG-Q-KREVKVIYMEAVVDK 397 (1179)
Q Consensus 320 eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIG-Q-kkeV~VyrLvaVEE~ 397 (1179)
..+.....+|..++.+++++|++ +..=.|.+-+.++|+. +|=+--.+...||+.|+.|+= . +..-.|+.++.+.+.
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~-dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~gl~e~ 655 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVV-DMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRGLKEA 655 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEE-ccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcchHHH
Confidence 44556667765567788887776 7777899999888764 566688899999999999974 4 334455555544444
Q ss_pred h
Q 001037 398 I 398 (1179)
Q Consensus 398 I 398 (1179)
+
T Consensus 656 l 656 (962)
T COG0610 656 L 656 (962)
T ss_pred H
Confidence 3
No 185
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.12 E-value=0.0079 Score=76.68 Aligned_cols=87 Identities=23% Similarity=0.339 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehh---HHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeee--
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTM---TKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS-- 342 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqf---t~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlS-- 342 (1179)
-++.+.++++++ |.-.|||.+- ...++.|.++|+.+|+++..++. ...+.++.|.. +++.|++..
T Consensus 323 ~~e~~~elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a-----~~~~~le~F~~--GeidvLVGvAs 392 (1187)
T COG1110 323 SLEKVVELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHA-----EKEEALEDFEE--GEVDVLVGVAS 392 (1187)
T ss_pred cHHHHHHHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeec-----cchhhhhhhcc--CceeEEEEecc
Confidence 345556666654 6678999998 88899999999999999888775 23678999985 455554433
Q ss_pred -hhhhccCCCCc-ccceeeecCCC
Q 001037 343 -IRAAGRGLNLQ-SADTVIIYDPD 364 (1179)
Q Consensus 343 -T~AGgeGLNLQ-~AdtVIi~D~p 364 (1179)
..+.-.||||+ .+.++||+..|
T Consensus 393 yYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 393 YYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred cccceeecCCchhheeEEEEecCC
Confidence 23466899999 69999999998
No 186
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=97.07 E-value=0.0012 Score=67.68 Aligned_cols=98 Identities=24% Similarity=0.311 Sum_probs=61.4
Q ss_pred HHHHHHHcC--CCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchhh--hccCCccEEEEcCCccCCC--hhh
Q 001037 5 QSELHKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RES 78 (1179)
Q Consensus 5 ~~Ef~Kw~P--~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~~--L~ki~wdlVIIDEAHriKN--~~S 78 (1179)
..++.+++. .+++..+.|......... .......+|+|+|++.+...... +.-...++|||||+|.+-. ...
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~ 138 (169)
T PF00270_consen 61 FERLRKFFSNTNVRVVLLHGGQSISEDQR--EVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRA 138 (169)
T ss_dssp HHHHHHHTTTTTSSEEEESTTSCHHHHHH--HHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHH
T ss_pred ccccccccccccccccccccccccccccc--ccccccccccccCcchhhccccccccccccceeeccCcccccccccHHH
Confidence 456777774 467777777543221111 11135689999999998876443 2223488999999999854 223
Q ss_pred HHHHHHHhh---cCCcEEEEeccCCCCChH
Q 001037 79 VLARDLDRY---RCQRRLLLTGTPLQNDLK 105 (1179)
Q Consensus 79 k~tkaL~~L---ka~~RLLLTGTPiqN~l~ 105 (1179)
.....+..+ ...+.+++||||- .+++
T Consensus 139 ~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 139 MLKSILRRLKRFKNIQIILLSATLP-SNVE 167 (169)
T ss_dssp HHHHHHHHSHTTTTSEEEEEESSST-HHHH
T ss_pred HHHHHHHHhcCCCCCcEEEEeeCCC-hhHh
Confidence 333344444 2356899999997 4444
No 187
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=96.96 E-value=0.043 Score=70.27 Aligned_cols=84 Identities=14% Similarity=0.228 Sum_probs=66.0
Q ss_pred cCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCC-CHHHHHHHHHHhccCCCCccEEeeehh
Q 001037 266 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT-SLEDRESAIVDFNSHDSDCFIFLLSIR 344 (1179)
Q Consensus 266 SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGst-s~eeRe~iI~~Fn~~ds~i~VLLlST~ 344 (1179)
..|+.++..-+......|.-|||-|......+.|...|...|+++-+++... ..+.-.++|.+=- ..--+-++|.
T Consensus 407 ~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~AG----~~G~VTIATN 482 (870)
T CHL00122 407 LSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAG----RKGSITIATN 482 (870)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhcC----CCCcEEEecc
Confidence 4588888887788888999999999999999999999999999999999874 3234445666532 2223678889
Q ss_pred hhccCCCCc
Q 001037 345 AAGRGLNLQ 353 (1179)
Q Consensus 345 AGgeGLNLQ 353 (1179)
.+|+|.|+.
T Consensus 483 MAGRGTDI~ 491 (870)
T CHL00122 483 MAGRGTDII 491 (870)
T ss_pred ccCCCcCee
Confidence 999997744
No 188
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=96.93 E-value=0.00078 Score=66.73 Aligned_cols=56 Identities=7% Similarity=-0.011 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhhhccCCchhHhhhhhccc--ccCCCccccccCCccchHHHHHHhcccCc
Q 001037 880 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKR--IETSGYVSGAGNNILDLRKIDQRVDRLEY 939 (1179)
Q Consensus 880 ~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r--~~~p~yy~~~i~~pidl~~i~qr~~~~~Y 939 (1179)
..|..+++.|+.... +..+-.|...+.. ...||||++ |++||||.+|..+|...+|
T Consensus 3 e~~~~~l~~l~~~~~---~~~~~pF~~PVd~~~~~~pdY~~i-IK~PMDL~ti~~kl~~~~~ 60 (114)
T cd05494 3 EALERVLRELKRHRR---NEDAWPFLEPVNPPRRGAPDYRDV-IKRPMSFGTKVNNIVETGA 60 (114)
T ss_pred HHHHHHHHHHHHhhh---CCCCCCcCCCCCchhcCCCChhhh-cCCCCChHHHHHHHHcccc
Confidence 357777777777665 7788899998888 999999999 9999999999999988755
No 189
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=96.85 E-value=0.0035 Score=66.72 Aligned_cols=96 Identities=19% Similarity=0.159 Sum_probs=60.8
Q ss_pred hhHHHHHHHHcC--CCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchh--hhccCCccEEEEcCCccCCChh
Q 001037 2 SMWQSELHKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE 77 (1179)
Q Consensus 2 sQW~~Ef~Kw~P--~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~--~L~ki~wdlVIIDEAHriKN~~ 77 (1179)
.||...+..+.. +..+..+.|........ .......+|+|+|.+.+..... .+.--.+++|||||+|.+.+..
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~ 159 (203)
T cd00268 83 LQIAEVARKLGKHTNLKVVVIYGGTSIDKQI---RKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMG 159 (203)
T ss_pred HHHHHHHHHHhccCCceEEEEECCCCHHHHH---HHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccC
Confidence 477778888764 56777788766544322 1222478999999887655321 1222357899999999986432
Q ss_pred -hH-HHHHHHhhc-CCcEEEEeccCC
Q 001037 78 -SV-LARDLDRYR-CQRRLLLTGTPL 100 (1179)
Q Consensus 78 -Sk-~tkaL~~Lk-a~~RLLLTGTPi 100 (1179)
.. ....+..+. ....+++||||-
T Consensus 160 ~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 160 FEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred hHHHHHHHHHhCCcccEEEEEeccCC
Confidence 12 222333343 566899999987
No 190
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=96.80 E-value=0.00018 Score=70.39 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=55.1
Q ss_pred cchhhhccCCCCCCCcccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 653 NHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
+.+.+.. .++|+.++.|| .+|+...+|+||+++++|++++. +..+|+.|+|....|-..|+.+
T Consensus 11 ~~v~~~~-----d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~t-I~~kl~~~~Y~s~~ef~~D~~l 74 (107)
T cd05516 11 DVVIKYK-----DSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKK-IKERIRNHKYRSLEDLEKDVML 74 (107)
T ss_pred HHHHhhh-----CcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHH-HHHHHccCCCCCHHHHHHHHHH
Confidence 4455555 45799999999 99999999999999999999998 9999999999999988888764
No 191
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=96.79 E-value=0.00072 Score=87.04 Aligned_cols=80 Identities=18% Similarity=0.276 Sum_probs=72.9
Q ss_pred hhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHh
Q 001037 903 LLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLK 982 (1179)
Q Consensus 903 ~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~y~~~~se~~~~A~~l~~~f~~~~~ 982 (1179)
.|-........|+||.+ |++|+||..|.+.+...+|.+..||..||.+++-|+.+||+..+..-+-|+++-.+-..-|.
T Consensus 1402 ~f~~~v~~k~~~~yy~k-ik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~~k~~k~~ev~~~~~~ 1480 (1563)
T KOG0008|consen 1402 PFHEPVNKKRVPDYYKK-IKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYTKKARKIGEVGLANLL 1480 (1563)
T ss_pred ccccccchhhchHHHHH-hcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccccccHHHHHHHHHHHHHHH
Confidence 35556677889999999 99999999999999999999999999999999999999999999999999998888777665
Q ss_pred h
Q 001037 983 I 983 (1179)
Q Consensus 983 ~ 983 (1179)
.
T Consensus 1481 e 1481 (1563)
T KOG0008|consen 1481 E 1481 (1563)
T ss_pred H
Confidence 4
No 192
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=96.78 E-value=0.00019 Score=70.13 Aligned_cols=56 Identities=18% Similarity=0.107 Sum_probs=52.0
Q ss_pred CCCcccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 665 SSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 665 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
..+|+.++.|| .+|++..+|+||++|++|++++. +..+|+.|+|....+-..|+++
T Consensus 19 d~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~t-I~~kl~~~~Y~s~~ef~~D~~l 75 (106)
T cd05525 19 DSNGQSLAIPFINLPSKKKNPDYYERITDPVDLST-IEKQILTGYYKTPEAFDSDMLK 75 (106)
T ss_pred ccCCCcccHhhccCCCcccCCchhhhCCCCcCHHH-HHHHHcCCCCCCHHHHHHHHHH
Confidence 35789999999 99999999999999999999988 9999999999999988888876
No 193
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=96.69 E-value=0.00025 Score=68.93 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=50.7
Q ss_pred CCcccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 666 SNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 666 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
.+|+.++.|| .+|++..+|+||++|++|++++. +..+|+.|+|....+...|+.+
T Consensus 18 ~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~l 73 (103)
T cd05520 18 NQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQ-IRTKLKNGEYETLEELEADLNL 73 (103)
T ss_pred CCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHH-HHHHHccCCCCCHHHHHHHHHH
Confidence 4689999999 99999999999999999999998 9999999999998888887764
No 194
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=96.66 E-value=0.14 Score=66.77 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=34.5
Q ss_pred CccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcce
Q 001037 335 DCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 385 (1179)
Q Consensus 335 ~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkke 385 (1179)
...+++++|.+...|+|+- +|.+|. |+. .-..++|+.||+.|-|+...
T Consensus 837 ~~~~i~v~Tqv~E~g~D~d-fd~~~~-~~~-~~~sliQ~aGR~~R~~~~~~ 884 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDHD-YDWAIA-DPS-SMRSIIQLAGRVNRHRLEKV 884 (1110)
T ss_pred CCCeEEEEeeeEEEEeccc-CCeeee-ccC-cHHHHHHHhhcccccccCCC
Confidence 3557899999999999975 343332 221 34568999999999987643
No 195
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=96.64 E-value=0.0045 Score=76.29 Aligned_cols=75 Identities=23% Similarity=0.170 Sum_probs=48.4
Q ss_pred EcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeec-----CCC---C-CcchHHHHhhcccccCCc
Q 001037 313 IDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY-----DPD---P-NPKNEEQAVARAHRIGQK 383 (1179)
Q Consensus 313 IdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~-----D~p---W-NP~~~eQAiGRIhRIGQk 383 (1179)
-+++.=+--++-+---|+ .+=++| |+.|...+-|||.++ .+|+|- |-. | +-..|+|.-|||+|-|-.
T Consensus 452 HHsGLLPIlKE~IEILFq--EGLvKv-LFATETFsiGLNMPA-kTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~D 527 (1041)
T KOG0948|consen 452 HHSGLLPILKEVIEILFQ--EGLVKV-LFATETFSIGLNMPA-KTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGID 527 (1041)
T ss_pred ccccchHHHHHHHHHHHh--ccHHHH-HHhhhhhhhccCCcc-eeEEEeeccccCCcceeeecccceEEecccccccCCC
Confidence 344443333333334566 344454 778899999999985 445443 221 2 567789999999999987
Q ss_pred ceEEEEEE
Q 001037 384 REVKVIYM 391 (1179)
Q Consensus 384 keV~VyrL 391 (1179)
..-.|+.+
T Consensus 528 drGivIlm 535 (1041)
T KOG0948|consen 528 DRGIVILM 535 (1041)
T ss_pred CCceEEEE
Confidence 66555555
No 196
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=96.64 E-value=0.022 Score=72.16 Aligned_cols=110 Identities=16% Similarity=0.281 Sum_probs=79.6
Q ss_pred HHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCC
Q 001037 271 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGL 350 (1179)
Q Consensus 271 ~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGL 350 (1179)
.+..++.. ...|++|.|||......+++++.+...+.+++.+++..+..+ ++.|. +++| |+=|.+...||
T Consensus 271 F~~~L~~~-L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W~----~~~V-viYT~~itvG~ 340 (824)
T PF02399_consen 271 FFSELLAR-LNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESWK----KYDV-VIYTPVITVGL 340 (824)
T ss_pred HHHHHHHH-HhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----ccccc----ceeE-EEEeceEEEEe
Confidence 44444444 457999999999999999999999999999999999877653 23344 4666 55557888898
Q ss_pred CCcc--cceeeec--CCCCCcch--HHHHhhcccccCCcceEEEEEE
Q 001037 351 NLQS--ADTVIIY--DPDPNPKN--EEQAVARAHRIGQKREVKVIYM 391 (1179)
Q Consensus 351 NLQ~--AdtVIi~--D~pWNP~~--~eQAiGRIhRIGQkkeV~VyrL 391 (1179)
++-. .|.|+.| .....|.. ..|.+||+..+.. +++.||+-
T Consensus 341 Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~~d 386 (824)
T PF02399_consen 341 SFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVYID 386 (824)
T ss_pred ccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEEEe
Confidence 8863 6667666 33444554 5899999988774 45655544
No 197
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=96.62 E-value=0.00031 Score=68.28 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=51.0
Q ss_pred CCCcccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 665 SSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 665 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
.++||.++.|| .+|++..+|+||+++++|++++. +..+|+.|+|....|...|+..
T Consensus 17 d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~l 73 (103)
T cd05517 17 DPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKT-IAQRIQSGYYKSIEDMEKDLDL 73 (103)
T ss_pred CcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHH-HHHHHCcCCCCCHHHHHHHHHH
Confidence 34899999999 99999999999999999999998 9999999999988888777764
No 198
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=96.59 E-value=0.24 Score=63.83 Aligned_cols=85 Identities=15% Similarity=0.207 Sum_probs=67.3
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCC-CCHHHHHHHHHHhccCCCCccEEeeeh
Q 001037 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT-TSLEDRESAIVDFNSHDSDCFIFLLSI 343 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGs-ts~eeRe~iI~~Fn~~ds~i~VLLlST 343 (1179)
...|+.++.+-+.++...|.-|||-|......+.|...|...|+++-+++.. ...+.-..+|.+=-. .--+-++|
T Consensus 421 ~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~AG~----~GaVTIAT 496 (939)
T PRK12902 421 EIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGR----KGAVTIAT 496 (939)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhcCC----CCcEEEec
Confidence 3578888888888888999999999999999999999999999999999986 333444456665322 22367788
Q ss_pred hhhccCCCCc
Q 001037 344 RAAGRGLNLQ 353 (1179)
Q Consensus 344 ~AGgeGLNLQ 353 (1179)
..+|+|.++.
T Consensus 497 NMAGRGTDIk 506 (939)
T PRK12902 497 NMAGRGTDII 506 (939)
T ss_pred cCCCCCcCEe
Confidence 9999997644
No 199
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.50 E-value=0.01 Score=67.75 Aligned_cols=138 Identities=17% Similarity=0.233 Sum_probs=80.3
Q ss_pred CCCEEEEcHHHHHhch-------hhhccC------Ccc-EEEEcCCccCCChhh------HHHHHHHhh----cCCcEEE
Q 001037 39 KFNVLVTTYEFIMYDR-------SKLSKV------DWK-YIIIDEAQRMKDRES------VLARDLDRY----RCQRRLL 94 (1179)
Q Consensus 39 ~~dVVITTYE~L~~d~-------~~L~ki------~wd-lVIIDEAHriKN~~S------k~tkaL~~L----ka~~RLL 94 (1179)
+..|+.+||..|.... ..|.++ .|+ +||+||||++||..+ +...++..| ..-+++.
T Consensus 136 ~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY 215 (303)
T PF13872_consen 136 KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVY 215 (303)
T ss_pred CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEE
Confidence 5679999999988762 222221 233 899999999999544 566666555 3456899
Q ss_pred EeccCCCCChHHHHHHHhh--hcC-CCCCChHHHHHHhcCccccCCCCCCCCchhHHHHHHHHHHHHHHHh--hhhhhhh
Q 001037 95 LTGTPLQNDLKELWSLLNL--LLP-EVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI--LEPFMLR 169 (1179)
Q Consensus 95 LTGTPiqN~l~EL~sLL~f--L~P-~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~ee~~~ii~rL~kv--L~pf~LR 169 (1179)
.|||.... +..|--+-++ -.+ ..|.+..+|.+-+.. ++.. ..+-+..- ..-.+++
T Consensus 216 ~SATgase-p~NmaYm~RLGLWG~gtpf~~~~~f~~a~~~----gGv~---------------amE~vA~dlKa~G~yia 275 (303)
T PF13872_consen 216 ASATGASE-PRNMAYMSRLGLWGPGTPFPDFDDFLEAMEK----GGVG---------------AMEMVAMDLKARGMYIA 275 (303)
T ss_pred ecccccCC-CceeeeeeeccccCCCCCCCCHHHHHHHHHh----cCch---------------HHHHHHHHHHhcchhee
Confidence 99998743 3333211111 111 245566666654432 1110 01111111 1233444
Q ss_pred hhhhhhhcCCCCceEEEEEecCCHHHHHHHHH
Q 001037 170 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDW 201 (1179)
Q Consensus 170 RtKkDV~~~LP~k~e~vV~~~LS~~Qr~lYd~ 201 (1179)
|... +-.....++.++|++.+..+|+.
T Consensus 276 R~LS-----f~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 276 RQLS-----FEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred eecc-----cCCceEEEEEecCCHHHHHHhcC
Confidence 4332 44556788999999999999984
No 200
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=96.35 E-value=0.00054 Score=66.77 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=50.5
Q ss_pred CCcccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 666 SNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 666 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
++|+.++.|| .+|++..+|+||++|++|++++. +..+|+.|+|....+-..|+.+
T Consensus 18 ~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~l 73 (105)
T cd05515 18 GRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEK-IRSKIEGNQYQSLDDMVSDFVL 73 (105)
T ss_pred cCCCcccHHhccCCCcccCCcHHHHcCCCcCHHH-HHHHHccCCCCCHHHHHHHHHH
Confidence 4699999999 89999999999999999999998 9999999999998888777765
No 201
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=96.34 E-value=0.00053 Score=67.74 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=51.2
Q ss_pred CCCcccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 665 SSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 665 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
+++|+.++++| .+|++..+|+||.+|++|++++. +..+|+.|+|....+-..|+.+
T Consensus 19 ~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~t-I~~kl~~~~Y~s~~~f~~D~~l 75 (113)
T cd05524 19 SEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLK-IQQKLKTEEYDDVDDLTADFEL 75 (113)
T ss_pred ccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHH-HHHHhCcCCCCCHHHHHHHHHH
Confidence 44899999999 99999999999999999999988 8899999999998888777765
No 202
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=96.34 E-value=0.00057 Score=66.31 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=51.1
Q ss_pred CCcccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 666 SNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 666 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
.+|+.++.|| .+|+...+|+||+++++|++++. +..+|+.|+|....|-..|+.+
T Consensus 18 ~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~-I~~kl~~~~Y~s~~~f~~D~~l 73 (103)
T cd05519 18 ETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQ-IKRRIEGRAYKSLEEFLEDFHL 73 (103)
T ss_pred cCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHH-HHHHHccCCCCCHHHHHHHHHH
Confidence 4789999999 99999999999999999999998 9999999999999998888775
No 203
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=96.27 E-value=0.019 Score=74.60 Aligned_cols=76 Identities=18% Similarity=0.093 Sum_probs=58.3
Q ss_pred EEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCC---------CCCcchHHHHhhcccccCC
Q 001037 312 RIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP---------DPNPKNEEQAVARAHRIGQ 382 (1179)
Q Consensus 312 rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~---------pWNP~~~eQAiGRIhRIGQ 382 (1179)
.-++++=+.-|..+-..|+. +-++ +|+.|.+.+.|+|++. .+|++... +-+|..+.|.-||++|-|+
T Consensus 449 vHH~GlLP~~K~~vE~Lfq~--GLvk-vvFaTeT~s~GiNmPa-rtvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGl 524 (1041)
T COG4581 449 VHHAGLLPAIKELVEELFQE--GLVK-VVFATETFAIGINMPA-RTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGL 524 (1041)
T ss_pred hhccccchHHHHHHHHHHhc--ccee-EEeehhhhhhhcCCcc-cceeeeeeEEecCCceeecChhHHHHhhhhhccccc
Confidence 45777777888888889984 4455 4788899999999984 44554433 3479999999999999999
Q ss_pred cceEEEEEE
Q 001037 383 KREVKVIYM 391 (1179)
Q Consensus 383 kkeV~VyrL 391 (1179)
...-+|+..
T Consensus 525 D~~G~vI~~ 533 (1041)
T COG4581 525 DVLGTVIVI 533 (1041)
T ss_pred cccceEEEe
Confidence 887655544
No 204
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=96.27 E-value=0.00063 Score=66.24 Aligned_cols=56 Identities=14% Similarity=0.036 Sum_probs=50.7
Q ss_pred CCCcccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 665 SSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 665 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
.++|+.++.|| .+|++..+|+||+++++|++++. +..+|..|+|....+-..|+.+
T Consensus 18 d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~t-I~~kl~~~~Y~s~~~f~~D~~l 74 (104)
T cd05522 18 DENGRLLTLHFEKLPDKAREPEYYQEISNPISLDD-IKKKVKRRKYKSFDQFLNDLNL 74 (104)
T ss_pred CcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHH-HHHHHccCCCCCHHHHHHHHHH
Confidence 35789999999 99999999999999999999998 9999999999988887777665
No 205
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=96.12 E-value=0.027 Score=71.67 Aligned_cols=71 Identities=23% Similarity=0.239 Sum_probs=51.6
Q ss_pred eEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecC----CCCCcchHHHHhhcccccCC
Q 001037 309 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD----PDPNPKNEEQAVARAHRIGQ 382 (1179)
Q Consensus 309 ~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D----~pWNP~~~eQAiGRIhRIGQ 382 (1179)
.+.+.+.+.+.++|..+-..|+. +.++| |++|...+-|+||++-..+|-+- ..-.-..|.|.+||++|.|-
T Consensus 524 GvAyHhaGLT~eER~~iE~afr~--g~i~v-l~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 524 GVAYHHAGLTSEEREIIEAAFRE--GNIFV-LVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred cceecccccccchHHHHHHHHHh--cCeEE-EEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhccc
Confidence 35566777888999988889984 44554 66677799999999655554322 12356678999999999874
No 206
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=96.07 E-value=0.00089 Score=65.13 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=51.3
Q ss_pred CCcccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 666 SNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 666 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
.+|+.++.+| .+|++..+|+||++|++||+++- +..+|+.|+|....+...|+.+
T Consensus 18 ~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~t-I~~kl~~~~Y~s~~ef~~D~~l 73 (103)
T cd05518 18 GSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKT-IEHNIRNDKYATEEELMDDFKL 73 (103)
T ss_pred cCCCcccHHHhcCCCcccCccHHHHcCCCcCHHH-HHHHHCCCCCCCHHHHHHHHHH
Confidence 5799999999 99999999999999999999988 9999999999999998888774
No 207
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.00 E-value=0.02 Score=60.22 Aligned_cols=100 Identities=22% Similarity=0.300 Sum_probs=64.7
Q ss_pred hhcCCeEEEeehhHHHHHHHHHHHHHcC----CeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehh--hhccCCCCc
Q 001037 280 QRTGHRVLLFSTMTKLLDILEEYLQWRQ----LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR--AAGRGLNLQ 353 (1179)
Q Consensus 280 ~~~g~KVLIFSqft~~ldiLe~~L~~~G----i~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~--AGgeGLNLQ 353 (1179)
...+.++|||+..-..++.+.+.+.... +.+. ..+ ..++..+++.|..... .+|+++. ...||+|+.
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~-~q~---~~~~~~~l~~~~~~~~---~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVF-VQG---SKSRDELLEEFKRGEG---AILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEE-EST---CCHHHHHHHHHCCSSS---EEEEEETTSCCGSSS--E
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceee-ecC---cchHHHHHHHHHhccC---eEEEEEecccEEEeecCC
Confidence 3456889999999999999999887653 3332 222 3478889999997333 3666666 899999999
Q ss_pred --ccceeeecCCCC-Ccch-----------------------------HHHHhhcccccCCcceE
Q 001037 354 --SADTVIIYDPDP-NPKN-----------------------------EEQAVARAHRIGQKREV 386 (1179)
Q Consensus 354 --~AdtVIi~D~pW-NP~~-----------------------------~eQAiGRIhRIGQkkeV 386 (1179)
.|..||+.-+|+ +|.. ..|++||+-|-....-+
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~ 143 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGV 143 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEE
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEE
Confidence 488999999997 3321 24999999997665444
No 208
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=95.82 E-value=0.0055 Score=76.44 Aligned_cols=105 Identities=10% Similarity=0.040 Sum_probs=85.6
Q ss_pred CCcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHH
Q 001037 873 KMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 952 (1179)
Q Consensus 873 ~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm 952 (1179)
-.++..-..|+ + ++=...|..-.+++..|.||-+ |+-|+||.++..++.++-|.++++|+.|+-+|
T Consensus 289 ~~~~~~~~~~~-------~------~~~s~~~~~kvs~~~a~~y~~i-~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~ 354 (720)
T KOG1472|consen 289 IGQEELYEAAE-------R------TEHSTPFLEKVSKEDAPNYYQI-IKAPMDLSTELKKLKSGPYCSKEEFVNDLMLI 354 (720)
T ss_pred ccCHHHHHHhc-------c------cccccccccCCChhhCcchHHh-hhcchHHHHHHHHhccccccchhHHHHHHHHH
Confidence 34566666666 1 4445678899999999999999 99999999999999999999999999999999
Q ss_pred HhhhhhhcCCChHHHHHHHHHHHHHHHHHhhhcCCCchH
Q 001037 953 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFR 991 (1179)
Q Consensus 953 ~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~~~~~~~~ 991 (1179)
++||..||...+.--..-..+-+-+--.|-.++|+..++
T Consensus 355 ~~n~~~~n~ee~~~~~~~~vv~~~~s~~~~~~~~~~li~ 393 (720)
T KOG1472|consen 355 WRNCEKYNSEESHGLIEFAVIMNSKSLALIKEIPIELIG 393 (720)
T ss_pred HhcchhhccccchhhhhhhhhhccCcHhHhccchhhhcc
Confidence 999999999996655555555444444555899988764
No 209
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=95.77 E-value=0.045 Score=71.47 Aligned_cols=110 Identities=18% Similarity=0.229 Sum_probs=76.5
Q ss_pred HHHHHHHHHh-hcCCeEEEeehhHHHHHHHHHHHHH----cCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhh
Q 001037 271 ILDRILIKLQ-RTGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 345 (1179)
Q Consensus 271 ~L~~IL~el~-~~g~KVLIFSqft~~ldiLe~~L~~----~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~A 345 (1179)
.+.+.|.++. ..+.++|||+.....++.+...|.. .++.+ +..+.. ..|.+++++|+.+... +|++|.+
T Consensus 661 ~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~---iLlgt~s 734 (850)
T TIGR01407 661 EIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNGEKA---ILLGTSS 734 (850)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhCCCe---EEEEcce
Confidence 4444554443 3556899999888999999988875 34443 323322 4789999999864333 5677899
Q ss_pred hccCCCCcc--cceeeecCCCCC-cc-----------------------------hHHHHhhcccccCCcceE
Q 001037 346 AGRGLNLQS--ADTVIIYDPDPN-PK-----------------------------NEEQAVARAHRIGQKREV 386 (1179)
Q Consensus 346 GgeGLNLQ~--AdtVIi~D~pWN-P~-----------------------------~~eQAiGRIhRIGQkkeV 386 (1179)
..||+|+.. ...||+.-+|+- |. ...|++||+-|-.+.+-+
T Consensus 735 f~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~ 807 (850)
T TIGR01407 735 FWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGS 807 (850)
T ss_pred eecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEE
Confidence 999999995 557788777762 32 235888999888776665
No 210
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=95.63 E-value=0.0042 Score=78.69 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=54.6
Q ss_pred CCCcccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCccccccCCC
Q 001037 665 SSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGS 724 (1179)
Q Consensus 665 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1179)
+++||-+++.| ++||++.+|+||++|++|+.+.| ++..|+.+.|...+++..||+..+.
T Consensus 1041 ~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~ 1100 (1157)
T KOG0386|consen 1041 DSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDK-IKKRIENHKYNSLKELEKDFMLLFN 1100 (1157)
T ss_pred cccccccchhcccCcccccccchHHHhcchhhHHH-HhhhccccccchHHHHHHHHHhhcc
Confidence 44799999999 99999999999999999999998 8899999999999999999987543
No 211
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=95.48 E-value=0.066 Score=69.37 Aligned_cols=130 Identities=15% Similarity=0.236 Sum_probs=103.5
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehh
Q 001037 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 344 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~ 344 (1179)
...|+.++..-+..+...|.-|||-|.....-+.|...|...||++-+|+.... +.-.++|.+=-. .+ .+-++|.
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~AG~-~G---aVTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAEAGQ-PG---TVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHhcCC-CC---cEEEecc
Confidence 346888999888899999999999999999999999999999999988887643 222345554322 22 3677889
Q ss_pred hhccCCCCc--------ccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeehhhhhhh
Q 001037 345 AAGRGLNLQ--------SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSH 401 (1179)
Q Consensus 345 AGgeGLNLQ--------~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~I~~~ 401 (1179)
.+|+|.++. +.=+||.-+.+-|...+.|..||++|.|..-...+| +++|+.+++.
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~--lSLEDdLmr~ 747 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY--VSLEDNLMRL 747 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE--EEcccHHHHh
Confidence 999998876 356888889999999999999999999998876544 3467766644
No 212
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=95.43 E-value=0.026 Score=58.20 Aligned_cols=62 Identities=21% Similarity=0.137 Sum_probs=36.8
Q ss_pred CCCCEEEEcHHHHHhc-hhhhccCCccEEEEcCCccCCChhhHHHHH-HHhh---cCCcEEEEeccCC
Q 001037 38 LKFNVLVTTYEFIMYD-RSKLSKVDWKYIIIDEAQRMKDRESVLARD-LDRY---RCQRRLLLTGTPL 100 (1179)
Q Consensus 38 ~~~dVVITTYE~L~~d-~~~L~ki~wdlVIIDEAHriKN~~Sk~tka-L~~L---ka~~RLLLTGTPi 100 (1179)
..-.|-+++|.++.+. .......+|++||+||||-. ++.|-..+- +..+ .....+++||||-
T Consensus 71 g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPP 137 (148)
T PF07652_consen 71 GSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPP 137 (148)
T ss_dssp SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-T
T ss_pred CCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCC
Confidence 4456888999887653 23334458999999999985 344433332 2222 2235899999994
No 213
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=95.42 E-value=0.67 Score=59.53 Aligned_cols=130 Identities=16% Similarity=0.206 Sum_probs=94.6
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehh
Q 001037 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 344 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~ 344 (1179)
...|+.++..-+......|..|||-+......+.+...|.+.||+..+++-.-. .++.-+-.+. +....+-++|.
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~A---G~~gaVTiATN 485 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQA---GQPGAVTIATN 485 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhc---CCCCccccccc
Confidence 346888888888888999999999999999999999999999999999988765 4444444433 22223567889
Q ss_pred hhccCCCCc-ccc----------eeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeehhhhhhh
Q 001037 345 AAGRGLNLQ-SAD----------TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSH 401 (1179)
Q Consensus 345 AGgeGLNLQ-~Ad----------tVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~I~~~ 401 (1179)
.+|.|-+++ ..+ +||=-+-.-+-..+.|--||++|.|-.-.- -.++++++.++++
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S--~F~lSleD~L~r~ 551 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSS--RFYLSLEDDLMRR 551 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchh--hhhhhhHHHHHHH
Confidence 999999988 333 345555555556666999999999943332 2233456655544
No 214
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=95.33 E-value=0.11 Score=65.92 Aligned_cols=114 Identities=21% Similarity=0.223 Sum_probs=80.3
Q ss_pred HHHHHHHHHh-hcCCeEEEeehhHHHHHHHHHHHHHcCCe-EEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhcc
Q 001037 271 ILDRILIKLQ-RTGHRVLLFSTMTKLLDILEEYLQWRQLV-YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348 (1179)
Q Consensus 271 ~L~~IL~el~-~~g~KVLIFSqft~~ldiLe~~L~~~Gi~-~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGge 348 (1179)
.+...|..+. ..+.++|||+..-..+..+.+.|...... .+...|..+ +..+++.|...... .|++.+....|
T Consensus 466 ~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~E 540 (654)
T COG1199 466 KLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWE 540 (654)
T ss_pred HHHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccC
Confidence 3444444433 34458888888888888889998876653 445566554 44899999974433 57888999999
Q ss_pred CCCCcc--cceeeecCCCCC-cch-----------------------------HHHHhhcccccCCcceEEEE
Q 001037 349 GLNLQS--ADTVIIYDPDPN-PKN-----------------------------EEQAVARAHRIGQKREVKVI 389 (1179)
Q Consensus 349 GLNLQ~--AdtVIi~D~pWN-P~~-----------------------------~eQAiGRIhRIGQkkeV~Vy 389 (1179)
|+|+.. +..||+.-.||= |.. ..|++||+.|--+.+-|.|+
T Consensus 541 GVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivl 613 (654)
T COG1199 541 GVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVL 613 (654)
T ss_pred cccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEE
Confidence 999994 789999998883 332 35999999995555555433
No 215
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=95.13 E-value=1.1 Score=55.96 Aligned_cols=106 Identities=22% Similarity=0.262 Sum_probs=73.5
Q ss_pred eEEEeehhHHHHHHHHHHHHHc----CC----eEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccc
Q 001037 285 RVLLFSTMTKLLDILEEYLQWR----QL----VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSAD 356 (1179)
Q Consensus 285 KVLIFSqft~~ldiLe~~L~~~----Gi----~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~Ad 356 (1179)
-+|||=.-.+.++.+++.|... +- -++.++|+++.++..+ -|......++=++++|..+...|++...-
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~r---vF~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSR---VFDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhc---cccCCCCCcceEEEEcceeeeeEEecceE
Confidence 5778876666666666666543 11 2567899999887654 46654546777899999999999999888
Q ss_pred eee--------ecCCCC-------CcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 357 TVI--------IYDPDP-------NPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 357 tVI--------i~D~pW-------NP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
+|| .|+|-- -|..-.||.-|++|.|.+.+..+|+|.+
T Consensus 337 YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYt 388 (674)
T KOG0922|consen 337 YVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYT 388 (674)
T ss_pred EEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeee
Confidence 876 333311 1223456666777777788888999976
No 216
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=95.12 E-value=0.51 Score=61.29 Aligned_cols=120 Identities=17% Similarity=0.236 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhhc--CCeEEEeehhHHHHHHHHHHHHHc-------CCeEEEEcCCCCHHHHHHHHHHhccCCCCccE
Q 001037 268 KLWILDRILIKLQRT--GHRVLLFSTMTKLLDILEEYLQWR-------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFI 338 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~--g~KVLIFSqft~~ldiLe~~L~~~-------Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~V 338 (1179)
.+.++..++..+... ...||||-.-...+..+.+.|... .+-+..+++.++..+.+.+ |+.+-..++=
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RK 472 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRK 472 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcch
Confidence 445555666555443 357999988888888777777632 2557778999998777655 6655556666
Q ss_pred EeeehhhhccCCCCcccceee--------ecCCC---------C-CcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 339 FLLSIRAAGRGLNLQSADTVI--------IYDPD---------P-NPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 339 LLlST~AGgeGLNLQ~AdtVI--------i~D~p---------W-NP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
+|++|..+...|++..+-+|| .||+. | +-+.-.||.||++|. .+=.+|+|.+
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv---~~G~cy~L~~ 542 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV---RPGICYHLYT 542 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc---cCCeeEEeec
Confidence 899999999999998877666 45553 2 344567999999884 3445676655
No 217
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.08 E-value=0.1 Score=68.85 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=74.4
Q ss_pred HHHHHHHHHHh-hcCCeEEEeehhHHHHHHHHHHHHHcCC--eEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhh
Q 001037 270 WILDRILIKLQ-RTGHRVLLFSTMTKLLDILEEYLQWRQL--VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 346 (1179)
Q Consensus 270 ~~L~~IL~el~-~~g~KVLIFSqft~~ldiLe~~L~~~Gi--~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AG 346 (1179)
..+.+.|..+. ..+.++|||......+..+.++|..... .+..+.-+++...|.+++++|+..... +|+.+.+.
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~---iLlG~~sF 814 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKA---ILLGTSSF 814 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCe---EEEecCcc
Confidence 45555555554 3445666665566777777777764322 133333233224678999999864333 56778999
Q ss_pred ccCCCCcc--cceeeecCCCC-Ccch-----------------------------HHHHhhcccccCCcceE
Q 001037 347 GRGLNLQS--ADTVIIYDPDP-NPKN-----------------------------EEQAVARAHRIGQKREV 386 (1179)
Q Consensus 347 geGLNLQ~--AdtVIi~D~pW-NP~~-----------------------------~eQAiGRIhRIGQkkeV 386 (1179)
.||+|++. +..||+.-+|+ +|.. +.|++||.-|-.+.+-+
T Consensus 815 wEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~ 886 (928)
T PRK08074 815 WEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGT 886 (928)
T ss_pred cCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEE
Confidence 99999995 68999999887 4542 24888888887766655
No 218
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=95.04 E-value=0.0023 Score=75.59 Aligned_cols=81 Identities=12% Similarity=0.164 Sum_probs=75.8
Q ss_pred hHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHH
Q 001037 901 VPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDL 980 (1179)
Q Consensus 901 ~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~y~~~~se~~~~A~~l~~~f~~~ 980 (1179)
.-.|+..|++.+.|+||.. +..+.++.+...++....|..+.++..|..+|++|+..|++..-..++.+..+.+.|...
T Consensus 281 ~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (371)
T COG5076 281 AWPFLRPVSDEEVPDYYKD-IRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVLEDFVIKK 359 (371)
T ss_pred cccccccCCcccccchhhh-hhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccchhhhHhhh
Confidence 3467899999999999999 999999999999999999999999999999999999999999999999999999988765
Q ss_pred Hh
Q 001037 981 LK 982 (1179)
Q Consensus 981 ~~ 982 (1179)
+.
T Consensus 360 ~~ 361 (371)
T COG5076 360 TR 361 (371)
T ss_pred hh
Confidence 54
No 219
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.95 E-value=0.086 Score=63.59 Aligned_cols=130 Identities=18% Similarity=0.173 Sum_probs=96.1
Q ss_pred cCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHH----HcCC----eEEEEcCCCCHHHHHHHHHHhccCCCCcc
Q 001037 266 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ----WRQL----VYRRIDGTTSLEDRESAIVDFNSHDSDCF 337 (1179)
Q Consensus 266 SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~----~~Gi----~~~rIdGsts~eeRe~iI~~Fn~~ds~i~ 337 (1179)
+.|+.-...++-++...|-++|-||..+.+.+.+....+ .-+- .+..+.|+-.+++|.++-...-. ++..
T Consensus 508 ~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~--G~L~ 585 (1034)
T KOG4150|consen 508 SSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG--GKLC 585 (1034)
T ss_pred hhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC--Ceee
Confidence 357777788888888899999999999887776544332 2221 13456788888999888776542 3333
Q ss_pred EEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcce-EEEEEEEeehhhh
Q 001037 338 IFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE-VKVIYMEAVVDKI 398 (1179)
Q Consensus 338 VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkke-V~VyrLvaVEE~I 398 (1179)
-+++|.|...||++-.-|.|+++..|.+-+.+-|-.||++|-....- |.|..+..|++..
T Consensus 586 -giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y 646 (1034)
T KOG4150|consen 586 -GIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYY 646 (1034)
T ss_pred -EEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHh
Confidence 47789999999999999999999999999999999999999765443 3333333344433
No 220
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=94.90 E-value=0.0039 Score=61.06 Aligned_cols=53 Identities=15% Similarity=0.124 Sum_probs=45.6
Q ss_pred CCcccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 666 SNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 666 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
.+|+.++++| .+|+++.+|+||+++++|++++. +..+|+. |....+-..|+.+
T Consensus 19 ~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~t-I~~kl~~--Y~s~~ef~~D~~l 72 (106)
T cd05521 19 ENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNT-VKKRLPH--YTNAQEFVNDLAQ 72 (106)
T ss_pred cCCCCchHhhhcCCccccCccHHHHhcCCCCHHH-HHHHHHc--CCCHHHHHHHHHH
Confidence 3589999999 99999999999999999999998 8888887 8877776666654
No 221
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=94.86 E-value=0.031 Score=72.82 Aligned_cols=79 Identities=14% Similarity=0.227 Sum_probs=72.1
Q ss_pred hhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHh
Q 001037 903 LLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLK 982 (1179)
Q Consensus 903 ~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~y~~~~se~~~~A~~l~~~f~~~~~ 982 (1179)
.|-....-.+.+|||.| |.+||||+++...|...-|..-+.|.-|+.||++|.-.||++.+..-..|...-++.|-.|+
T Consensus 1281 ~f~~Pv~~k~v~dyy~v-i~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~~~t~~~q~mls~~~~~~~ 1359 (1563)
T KOG0008|consen 1281 PFPTPVNAKEVKDYYRV-ITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLASLTRQQQSMLSLCFEKLK 1359 (1563)
T ss_pred CCCCccchhhccchhhc-cCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchHHHHHHHHHHHHHHHHhhc
Confidence 46667888999999999 99999999999999999999999999999999999999999999999888887777776664
No 222
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=94.48 E-value=0.0063 Score=70.28 Aligned_cols=74 Identities=9% Similarity=0.019 Sum_probs=65.9
Q ss_pred hhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHH
Q 001037 904 LTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFF 978 (1179)
Q Consensus 904 ~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~y~~~~se~~~~A~~l~~~f~ 978 (1179)
|-.+..-.=.|+|-++ |+.|+|+.+|.++|+-.+|.+.-+|..|..+|+.||.+||-+..-++..|..|..|-.
T Consensus 40 fafplt~~map~y~~i-is~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~~aaKrL~~v~~ 113 (418)
T KOG1828|consen 40 FAFPLTDKMAPNYLEI-ISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPIVAAKRLCPVRL 113 (418)
T ss_pred hccccchhhccchHhh-hhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCccccccccccchhhc
Confidence 3334444557999999 9999999999999999999999999999999999999999999999999999887643
No 223
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=93.94 E-value=0.4 Score=61.51 Aligned_cols=92 Identities=15% Similarity=0.233 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHc-CCeEEEEcCCCCHHHHHHHHHHhccC--CCCccEEeeehhh
Q 001037 269 LWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNSH--DSDCFIFLLSIRA 345 (1179)
Q Consensus 269 l~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~-Gi~~~rIdGsts~eeRe~iI~~Fn~~--ds~i~VLLlST~A 345 (1179)
...+.+.|..+...+.++|||...-..+..+...|... ++. +.+.|.. .|.++++.|.+. .++- -+|+.+.+
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~-~VL~g~~s 594 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEG-SVLFGLQS 594 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCC-eEEEEecc
Confidence 34555555555555555666666666677777777643 333 4445642 577888777641 1112 25666799
Q ss_pred hccCCCCcc--cceeeecCCCC
Q 001037 346 AGRGLNLQS--ADTVIIYDPDP 365 (1179)
Q Consensus 346 GgeGLNLQ~--AdtVIi~D~pW 365 (1179)
..||+|+.. +..||+.-+|+
T Consensus 595 f~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 595 FAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred ccccccCCCCceEEEEEEcCCC
Confidence 999999984 89999998887
No 224
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=93.86 E-value=0.0093 Score=57.48 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=44.0
Q ss_pred ccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 671 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 671 ~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
.+.|| .+|+...+|+|++++++||+++. +..+|+.|+|....+-..|+.+
T Consensus 17 ~s~~F~~pv~~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~D~~l 67 (97)
T cd05505 17 FSWPFREPVTADEAEDYKKVITNPMDLQT-MQTKCSCGSYSSVQEFLDDMKL 67 (97)
T ss_pred CcccccCCCChhhcccHHHHcCCcCCHHH-HHHHHcCCCCCCHHHHHHHHHH
Confidence 45688 88889999999999999999998 8999999999988877777664
No 225
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=93.78 E-value=0.0099 Score=57.53 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=44.5
Q ss_pred ccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 671 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 671 ~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
.+.|| .+|+...+|+|+.++++||+++. +.++|+.|+|....+-..|+.+
T Consensus 19 ~s~~F~~PV~~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~Dv~L 69 (99)
T cd05508 19 GAEPFLKPVDLEQFPDYAQYVFKPMDLST-LEKNVRKKAYGSTDAFLADAKW 69 (99)
T ss_pred CcchhcCCCChhhCCCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHH
Confidence 46788 88888999999999999999998 9999999999988877777665
No 226
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=93.63 E-value=0.52 Score=61.52 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCC
Q 001037 271 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGL 350 (1179)
Q Consensus 271 ~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGL 350 (1179)
.+.+.|..+...+.+++|+.....++..+.+.|....+.. ...|... .+.+++++|+..+.. +|+.+.+..||+
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEGV 708 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCCC
Confidence 5555555555556677776666677777788887655444 5556433 356789999864333 677779999999
Q ss_pred CCc--ccceeeecCCCC
Q 001037 351 NLQ--SADTVIIYDPDP 365 (1179)
Q Consensus 351 NLQ--~AdtVIi~D~pW 365 (1179)
|++ .+..||+.-+|+
T Consensus 709 D~p~~~~~~viI~kLPF 725 (820)
T PRK07246 709 DFVQADRMIEVITRLPF 725 (820)
T ss_pred CCCCCCeEEEEEecCCC
Confidence 996 456677777664
No 227
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=93.62 E-value=0.011 Score=57.70 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=45.4
Q ss_pred ccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 669 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 669 ~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
...+.|| .+|+...+|+|+.++++||+++. +..+|+.|+|....+-..|+.+
T Consensus 18 ~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~D~~l 70 (104)
T cd05507 18 HRYASVFLKPVTEDIAPGYHSVVYRPMDLST-IKKNIENGTIRSTAEFQRDVLL 70 (104)
T ss_pred CCCCHhhcCCCCccccCCHHHHhCCCcCHHH-HHHHHhcCCCCCHHHHHHHHHH
Confidence 3457888 88888899999999999999998 9999999999988887777654
No 228
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.38 E-value=0.43 Score=61.31 Aligned_cols=96 Identities=11% Similarity=0.196 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhh-cCCeEEEeehhHHHHHHHHHHHHHcCC-------eEEEEcCCCCHHHHHHHHHHhccC--CCCccEE
Q 001037 270 WILDRILIKLQR-TGHRVLLFSTMTKLLDILEEYLQWRQL-------VYRRIDGTTSLEDRESAIVDFNSH--DSDCFIF 339 (1179)
Q Consensus 270 ~~L~~IL~el~~-~g~KVLIFSqft~~ldiLe~~L~~~Gi-------~~~rIdGsts~eeRe~iI~~Fn~~--ds~i~VL 339 (1179)
..+.++|..+.. ....+|||...-..++.+...+...++ ..+.+.+... .++..+++.|... .+. ..+
T Consensus 508 ~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~-~~~~~~l~~f~~~~~~~~-gav 585 (705)
T TIGR00604 508 RNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDA-QETSDALERYKQAVSEGR-GAV 585 (705)
T ss_pred HHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCc-chHHHHHHHHHHHHhcCC-ceE
Confidence 345555544443 356677776666667766666654332 2344444332 5789999999742 111 125
Q ss_pred eeeh--hhhccCCCCcc--cceeeecCCCC-Cc
Q 001037 340 LLSI--RAAGRGLNLQS--ADTVIIYDPDP-NP 367 (1179)
Q Consensus 340 LlST--~AGgeGLNLQ~--AdtVIi~D~pW-NP 367 (1179)
|+++ ...+||||+.. +..||++-+|+ ||
T Consensus 586 L~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~ 618 (705)
T TIGR00604 586 LLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYT 618 (705)
T ss_pred EEEecCCcccCccccCCCCCcEEEEEccCCCCC
Confidence 6665 67899999994 89999999998 54
No 229
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=93.37 E-value=0.11 Score=52.62 Aligned_cols=69 Identities=19% Similarity=0.357 Sum_probs=62.3
Q ss_pred cCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHhhhcCCCc
Q 001037 921 GNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTD 989 (1179)
Q Consensus 921 i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~~~~~~ 989 (1179)
--.|.||..+.+|++.+-|.+|.+|..||=.++.-|+.=-+...|..+.-..++.+|+..|..+||-.+
T Consensus 56 ~~~p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf~ 124 (131)
T cd05493 56 ELPPLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWFN 124 (131)
T ss_pred CCCcccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhccccc
Confidence 345999999999999999999999999999999988888888888888888899999999999999654
No 230
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=93.37 E-value=0.013 Score=56.59 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=45.7
Q ss_pred ccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 669 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 669 ~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
+..+.+| .+|+...+|+|++++++||+++. +..+|+.|+|....+-..|+.+
T Consensus 16 ~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~D~~l 68 (98)
T cd05512 16 KDTAEIFSEPVDLSEVPDYLDHIKQPMDFST-MRKKLESQRYRTLEDFEADFNL 68 (98)
T ss_pred CCCchhhcCCCCccccCCHHHHhcCCcCHHH-HHHHHhCCCCCCHHHHHHHHHH
Confidence 3456778 88888999999999999999998 9999999999999888888765
No 231
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=93.28 E-value=0.017 Score=56.74 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=43.3
Q ss_pred ccccccc-CCCCcc--ccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 669 RRLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 669 ~~~~~~~-~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
+..+.|| .+|+.. .+|+|+++|++||+++. +..+|+.|+|....+-..|+.+
T Consensus 20 ~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~t-I~~kL~~~~Y~s~~ef~~D~~l 74 (107)
T cd05497 20 HKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGT-IKKRLENNYYWSASECIQDFNT 74 (107)
T ss_pred CCcCccccCCCCcccccCCcHHHHHcCcccHHH-HHHHHcCCCCCCHHHHHHHHHH
Confidence 4567889 777766 59999999999999998 9999999999988776666543
No 232
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=92.96 E-value=0.015 Score=57.41 Aligned_cols=54 Identities=9% Similarity=0.036 Sum_probs=47.8
Q ss_pred CCCcccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 665 SSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 665 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
..+||.+++|| .+|+++ ++++.++++|+++++ +...|+.|+|....|...|+..
T Consensus 20 D~~Gr~~s~~f~~LP~~~--~~~~~~ik~Pi~l~~-Ik~ki~~~~Y~~ld~~~~D~~l 74 (110)
T cd05526 20 DEEGRCYSDSLAELPELA--VDGVGPKKIPLTLDI-IKRNVDKGRYRRLDKFQEDMFE 74 (110)
T ss_pred CCCCCCchHHHHHCCCcc--cCchhhhcCCccHHH-HHHHHHcCCcCcHHHHHHHHHH
Confidence 45899999999 999944 677899999999998 9999999999999998888765
No 233
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=92.65 E-value=0.018 Score=57.60 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=44.4
Q ss_pred ccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 671 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 671 ~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
.+.|| .+|+...+|+|+.++++||+++. +..+|+.|+|....|-..|+.+
T Consensus 22 ~s~~F~~PVd~~~~pdY~~iIk~PmDL~t-Ik~kL~~~~Y~~~~ef~~D~~l 72 (119)
T cd05496 22 DSEPFRQPVDLLKYPDYRDIIDTPMDLGT-VKETLFGGNYDDPMEFAKDVRL 72 (119)
T ss_pred ccccccCCCChhhcCcHHHHhCCcccHHH-HHHHHhCCCCCCHHHHHHHHHH
Confidence 46788 88888899999999999999998 9999999999988887777665
No 234
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=92.42 E-value=0.022 Score=56.39 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=45.4
Q ss_pred ccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 671 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 671 ~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
.+.|| .+|+...+|+|+.++++||+++. +..+|+.|+|....+-..|+..
T Consensus 25 ~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~L 75 (112)
T cd05510 25 HSTPFLTKVSKREAPDYYDIIKKPMDLGT-MLKKLKNLQYKSKAEFVDDLNL 75 (112)
T ss_pred cccchhcCCChhhcCCHHHHhcCccCHHH-HHHHHhCCCCCCHHHHHHHHHH
Confidence 46789 89999999999999999999998 9999999999998888888765
No 235
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=92.28 E-value=0.025 Score=55.94 Aligned_cols=50 Identities=14% Similarity=0.154 Sum_probs=44.0
Q ss_pred ccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 671 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 671 ~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
.+.|| .+|+...+|+||+++++|++++. +..+|+.|+|....+...|+..
T Consensus 17 ~s~~F~~pv~~~~~p~Y~~~I~~PmdL~t-I~~kl~~~~Y~s~~ef~~Dv~l 67 (112)
T cd05511 17 DSWPFHTPVNKKKVPDYYKIIKRPMDLQT-IRKKISKHKYQSREEFLEDIEL 67 (112)
T ss_pred CchhhcCCCChhhcccHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHH
Confidence 45789 89999999999999999999998 9999999999988777777654
No 236
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=91.94 E-value=0.027 Score=54.18 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=43.6
Q ss_pred ccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 671 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 671 ~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
.+.|| .+|+...+|+|+.++++|++++. +..+|+.|+|....+-..|+.+
T Consensus 17 ~~~~F~~pv~~~~~p~Y~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~l 67 (97)
T cd05503 17 DAWPFLEPVNTKLVPGYRKIIKKPMDFST-IREKLESGQYKTLEEFAEDVRL 67 (97)
T ss_pred CchhhcCCCCccccCCHHHHhCCCCCHHH-HHHHHccCCCCCHHHHHHHHHH
Confidence 45678 88888899999999999999998 9999999999888777777665
No 237
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=91.94 E-value=0.033 Score=53.87 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=45.1
Q ss_pred Ccccccccc-CCCCcc--ccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 667 NSRRLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 667 ~~~~~~~~~-~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
+++.++.|| .+|... .+|+|++++++|++++. +..+|+.|+|...-|-+.|+..
T Consensus 16 ~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~-I~~kl~~~~Y~s~~ef~~D~~l 72 (102)
T cd05498 16 KHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLST-IKKKLDNREYADAQEFAADVRL 72 (102)
T ss_pred CCccccCcccCcCCccccCCCcHHHHccCCCcHHH-HHHHHccCCCCCHHHHHHHHHH
Confidence 556788899 655544 69999999999999998 9999999999988877777654
No 238
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=91.83 E-value=0.88 Score=46.86 Aligned_cols=53 Identities=13% Similarity=0.170 Sum_probs=36.9
Q ss_pred EEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcc--cceeeecCCCC
Q 001037 310 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS--ADTVIIYDPDP 365 (1179)
Q Consensus 310 ~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~--AdtVIi~D~pW 365 (1179)
.+.+.|. ...+...+++.|...... .+|+++....||+|+.. +..||+.-+|+
T Consensus 25 ~i~~e~~-~~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 25 LLLVQGE-DGKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred eEEEeCC-ChhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 3344443 334578899999863221 35677777999999994 78899988775
No 239
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=91.68 E-value=0.035 Score=54.54 Aligned_cols=51 Identities=18% Similarity=0.161 Sum_probs=43.1
Q ss_pred cccccc-CCCCcc--ccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 670 RLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 670 ~~~~~~-~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
..+.|| .+|+.. .+|+||++|++||+++. +..+|+.|+|....+-..|+.+
T Consensus 20 ~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~t-I~~kL~~~~Y~s~~ef~~D~~l 73 (108)
T cd05495 20 PESLPFRQPVDPKLLGIPDYFDIVKNPMDLST-IRRKLDTGQYQDPWQYVDDVWL 73 (108)
T ss_pred cccchhcCCCCccccCCCcHHHHhCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHH
Confidence 345678 666665 69999999999999998 9999999999998888777765
No 240
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=91.62 E-value=0.033 Score=53.95 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=45.2
Q ss_pred ccccccc-CCCCcc--ccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 669 RRLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 669 ~~~~~~~-~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
+.++.|| .+|+.. .+|+|++++++|++++. +..+|+.|+|....+-..|+.+
T Consensus 18 ~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~-I~~kl~~~~Y~s~~ef~~D~~l 72 (102)
T cd05499 18 SAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGT-ISKKLQNGQYQSAKEFERDVRL 72 (102)
T ss_pred CcccchhcCCCCccccCCCCHHHHhcCCCCHHH-HHHHHcCCCCCCHHHHHHHHHH
Confidence 4578899 777766 99999999999999998 9999999999988888777765
No 241
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=91.56 E-value=0.034 Score=55.04 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=44.3
Q ss_pred ccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 671 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 671 ~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
.+-|| .+|+...+|+||+++++||+++- +..+|+.|+|....+-..|+..
T Consensus 20 ~~~~F~~pv~~~~~pdY~~vI~~PmdL~t-I~~kl~~~~Y~s~~ef~~Dv~l 70 (112)
T cd05528 20 RFNAFTKPVDEEEVPDYYEIIKQPMDLQT-ILQKLDTHQYLTAKDFLKDIDL 70 (112)
T ss_pred CchhhcCCCCccccCcHHHHHcCCCCHHH-HHHHHcCCCcCCHHHHHHHHHH
Confidence 34688 88999999999999999999988 8899999999998888877764
No 242
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=91.49 E-value=0.68 Score=47.67 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=35.1
Q ss_pred EEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhh--hccCCCCcc--cceeeecCCCC
Q 001037 311 RRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA--AGRGLNLQS--ADTVIIYDPDP 365 (1179)
Q Consensus 311 ~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~A--GgeGLNLQ~--AdtVIi~D~pW 365 (1179)
+.+.+... .+...+++.|+........+|+++.. .+|||||+. +..||+.-+|+
T Consensus 23 i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 23 VFIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 44445432 34578999998632211134555444 899999994 78999988886
No 243
>smart00297 BROMO bromo domain.
Probab=91.48 E-value=0.029 Score=54.12 Aligned_cols=52 Identities=23% Similarity=0.291 Sum_probs=46.2
Q ss_pred ccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 669 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 669 ~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
+..+.+| .+|+...+|+|++++++|++++. +..+|+.|+|....+...|+.+
T Consensus 22 ~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~-I~~kl~~~~Y~s~~ef~~D~~l 74 (107)
T smart00297 22 HRLSWPFLKPVDRKEAPDYYDIIKKPMDLST-IKKKLENGKYSSVEEFVADVQL 74 (107)
T ss_pred CccchhhccCCChhhccCHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHH
Confidence 4678899 88999999999999999999988 9999999999888877777664
No 244
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=91.43 E-value=0.12 Score=60.23 Aligned_cols=78 Identities=12% Similarity=0.026 Sum_probs=67.2
Q ss_pred HhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhhhcCCChHHHHHH
Q 001037 891 RRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEA 970 (1179)
Q Consensus 891 ~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~y~~~~se~~~~A 970 (1179)
+++|..|.+= -.|.=...|.|--. |+.+.|..+...|+.+.+|.+ -+|+.|+-|||-||+.|++++--.|+-|
T Consensus 221 ~~~~p~~~ln-----yg~tas~aP~YSm~-Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyela 293 (418)
T KOG1828|consen 221 NRVDPVAYLN-----YGPTASFAPGYSMT-ITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYELA 293 (418)
T ss_pred cccCchhhhc-----ccchhhhccccccc-ccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHHH
Confidence 4457777644 44555678999544 999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHH
Q 001037 971 RKVHD 975 (1179)
Q Consensus 971 ~~l~~ 975 (1179)
+++.-
T Consensus 294 nk~lh 298 (418)
T KOG1828|consen 294 NKQLH 298 (418)
T ss_pred Hhhhh
Confidence 98766
No 245
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=91.39 E-value=0.033 Score=53.82 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=43.3
Q ss_pred cccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 672 TQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 672 ~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
+.+| .+|+...+|+|++++++||+++. +..+|+.|+|....+-..|+.+
T Consensus 19 ~~~F~~PV~~~~~pdY~~vIk~PmDL~t-I~~kl~~~~Y~s~~~f~~D~~l 68 (98)
T cd05513 19 HGFFAFPVTDFIAPGYSSIIKHPMDFST-MKEKIKNNDYQSIEEFKDDFKL 68 (98)
T ss_pred cccccCcCCccccccHHHHHcCccCHHH-HHHHHhCCCCCCHHHHHHHHHH
Confidence 5577 66777789999999999999998 9999999999999888888775
No 246
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=91.29 E-value=2.3 Score=51.58 Aligned_cols=115 Identities=21% Similarity=0.218 Sum_probs=88.9
Q ss_pred cCHHHHHHH-HHHHHh--hcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeee
Q 001037 266 CGKLWILDR-ILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 342 (1179)
Q Consensus 266 SgKl~~L~~-IL~el~--~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlS 342 (1179)
..++..+.. +|+.+. ....++|||...=--.-.|..+|+..++.++.++--++..+-..+-..|. .+...|+|.+
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~--~G~~~iLL~T 357 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFF--HGRKPILLYT 357 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHH--cCCceEEEEE
Confidence 356666554 777776 23468999986555556689999999999999999999999999999999 4567788887
Q ss_pred hhhhc-cCCCCcccceeeecCCCCCcchHHHHhhcccccCC
Q 001037 343 IRAAG-RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ 382 (1179)
Q Consensus 343 T~AGg-eGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQ 382 (1179)
-++-= .=..+.++.+||+|.||-+|.-|...+.-+..-.+
T Consensus 358 ER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~ 398 (442)
T PF06862_consen 358 ERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSG 398 (442)
T ss_pred hHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhccccc
Confidence 55522 33457789999999999999999988876655443
No 247
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=91.24 E-value=0.03 Score=54.07 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=44.4
Q ss_pred ccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 671 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 671 ~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
.+.|| .+|+...+|+|++++++|++++. +..+|+.|+|....+-..|+.+
T Consensus 18 ~a~~F~~pv~~~~~p~Y~~~I~~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~l 68 (101)
T cd05509 18 SAWPFLEPVDKEEAPDYYDVIKKPMDLST-MEEKLENGYYVTLEEFVADLKL 68 (101)
T ss_pred CchhhcCCCChhhcCCHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHH
Confidence 45788 88999999999999999999988 9999999999988887777665
No 248
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=91.22 E-value=1 Score=57.71 Aligned_cols=93 Identities=24% Similarity=0.284 Sum_probs=69.0
Q ss_pred HHHHHHHHHHc--CCeEEEEcCCCCHHH--HHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCC------
Q 001037 296 LDILEEYLQWR--QLVYRRIDGTTSLED--RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP------ 365 (1179)
Q Consensus 296 ldiLe~~L~~~--Gi~~~rIdGsts~ee--Re~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pW------ 365 (1179)
.+.+++.|... +.+++++|++++... -+.++..|.++..+ ||+.|....-|+|++....|.++|.|-
T Consensus 493 terieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~d---ILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~D 569 (730)
T COG1198 493 TERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEAD---ILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPD 569 (730)
T ss_pred HHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCC---eeecchhhhcCCCcccceEEEEEechhhhcCCC
Confidence 34455555443 778999999886533 46789999976665 688899999999999999888776652
Q ss_pred ------CcchHHHHhhcccccCCcceEEEEEE
Q 001037 366 ------NPKNEEQAVARAHRIGQKREVKVIYM 391 (1179)
Q Consensus 366 ------NP~~~eQAiGRIhRIGQkkeV~VyrL 391 (1179)
..+.+.|.-||++|-+-...|.+-.+
T Consensus 570 fRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~ 601 (730)
T COG1198 570 FRASERTFQLLMQVAGRAGRAGKPGEVVIQTY 601 (730)
T ss_pred cchHHHHHHHHHHHHhhhccCCCCCeEEEEeC
Confidence 12446799999999877777655443
No 249
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=90.95 E-value=0.042 Score=54.62 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=44.5
Q ss_pred ccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 671 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 671 ~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
.+.|| .+|+...+|+||++|++||+++. +..+|+.|+|....+-..|+..
T Consensus 29 ~s~~F~~pvd~~~~pdY~~vI~~PmDL~t-I~~kL~~~~Y~s~~~f~~Dv~L 79 (115)
T cd05504 29 DSWPFLRPVSKIEVPDYYDIIKKPMDLGT-IKEKLNMGEYKLAEEFLSDIQL 79 (115)
T ss_pred CchhhcCCCCccccccHHHHhcCcccHHH-HHHHHccCCCCCHHHHHHHHHH
Confidence 35688 88899999999999999999998 9999999999998888877764
No 250
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=90.70 E-value=0.17 Score=65.46 Aligned_cols=80 Identities=16% Similarity=0.234 Sum_probs=55.2
Q ss_pred EEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCC
Q 001037 286 VLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP 365 (1179)
Q Consensus 286 VLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pW 365 (1179)
+++|+.+..+...+...+. ..+.....+...++.+|.. -+....+.+|.+|+.+...+.|+++|
T Consensus 445 ~~~~~v~itty~~l~~~~~--------~~~~l~~~~~~~~v~DEa~--------~ikn~~s~~~~~l~~~~~~~~~~Ltg 508 (866)
T COG0553 445 VIIFDVVITTYELLRRFLV--------DHGGLKKIEWDRVVLDEAH--------RIKNDQSSEGKALQFLKALNRLDLTG 508 (866)
T ss_pred cceeeEEechHHHHHHhhh--------hHHHHhhceeeeeehhhHH--------HHhhhhhHHHHHHHHHhhcceeeCCC
Confidence 7888888888887777541 1111111122222233321 04457788899999999999999999
Q ss_pred CcchHHHHhhcccccCCc
Q 001037 366 NPKNEEQAVARAHRIGQK 383 (1179)
Q Consensus 366 NP~~~eQAiGRIhRIGQk 383 (1179)
+| .+|++++.+++++.
T Consensus 509 TP--len~l~eL~sl~~~ 524 (866)
T COG0553 509 TP--LENRLGELWSLLQE 524 (866)
T ss_pred Ch--HhhhHHHHHHHHHH
Confidence 99 79999999999997
No 251
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.68 E-value=2 Score=53.72 Aligned_cols=84 Identities=17% Similarity=0.131 Sum_probs=57.0
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCC----CCCcc-----------hHH
Q 001037 307 QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP----DPNPK-----------NEE 371 (1179)
Q Consensus 307 Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~----pWNP~-----------~~e 371 (1179)
++.++-|...++.+-..+ -|+.....++-++++|..+...|.+....+||=... .+||. .-.
T Consensus 597 ~L~vlpiYSQLp~dlQ~k---iFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAK---IFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhh---hcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 667888888888665544 466556667778999999999999999888874322 23432 233
Q ss_pred HHhhcccccCCcceEEEEEEEe
Q 001037 372 QAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 372 QAiGRIhRIGQkkeV~VyrLva 393 (1179)
+|.-|++|.|.+.+-..|++.+
T Consensus 674 nA~QRaGRAGRt~pG~cYRlYT 695 (1042)
T KOG0924|consen 674 NADQRAGRAGRTGPGTCYRLYT 695 (1042)
T ss_pred cchhhccccCCCCCcceeeehh
Confidence 4444555555566767788866
No 252
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=90.66 E-value=0.19 Score=52.96 Aligned_cols=37 Identities=16% Similarity=0.411 Sum_probs=26.4
Q ss_pred CCCCEEEEcHHHHHhch--hhh--ccCCccEEEEcCCccCC
Q 001037 38 LKFNVLVTTYEFIMYDR--SKL--SKVDWKYIIIDEAQRMK 74 (1179)
Q Consensus 38 ~~~dVVITTYE~L~~d~--~~L--~ki~wdlVIIDEAHriK 74 (1179)
...+|||++|.+|.... ..+ ....-.+|||||||++-
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~ 158 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLE 158 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchH
Confidence 45799999999998762 222 23355799999999984
No 253
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=90.63 E-value=0.094 Score=66.35 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=70.2
Q ss_pred ccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHhhhcC
Q 001037 911 IETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 986 (1179)
Q Consensus 911 ~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~~~ 986 (1179)
...|+||.+ |.+|+|+.+|..++.+..|....+=..|+.-||.||..|+...-.+...+..++++|...+.-++=
T Consensus 22 l~~~~~~~~-~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 96 (640)
T KOG1474|consen 22 LNLPAYYEI-IKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLEKLFPKKLRSMPS 96 (640)
T ss_pred ccchhhhcc-cCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccchhhcccccccccc
Confidence 457999999 999999999999999999999999999999999999999999999999999999999988776653
No 254
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=90.36 E-value=0.054 Score=54.86 Aligned_cols=54 Identities=13% Similarity=0.066 Sum_probs=48.2
Q ss_pred Ccccccccc-CCCCcc-ccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 667 NSRRLTQIV-SPVSPQ-KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 667 ~~~~~~~~~-~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
..+..+.|| .+|+.. .+|+|++++++|++++. +..+|+.|+|....+-..|+.+
T Consensus 40 ~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~L 95 (128)
T cd05529 40 LQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLET-IRSRLENRYYRSLEALRHDVRL 95 (128)
T ss_pred ccCcccccccCCCCccccCCcHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHH
Confidence 577888999 888988 99999999999999998 9999999999988877777764
No 255
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=89.82 E-value=0.036 Score=51.07 Aligned_cols=50 Identities=20% Similarity=0.366 Sum_probs=42.1
Q ss_pred cccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCccccc
Q 001037 670 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQ 720 (1179)
Q Consensus 670 ~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1179)
..+.+| .+|+...+|+|++++++|++|+. +.++|+.|+|....+...|+.
T Consensus 12 ~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~-I~~kl~~~~Y~s~~~f~~Dv~ 62 (84)
T PF00439_consen 12 PISSPFSKPVDPKEYPDYYEIIKNPMDLST-IRKKLENGKYKSIEEFEADVR 62 (84)
T ss_dssp TTGGGGSSSTHTTTSTTHHHHSSSS--HHH-HHHHHHTTSSSSHHHHHHHHH
T ss_pred CCchhhcCCCChhhCCCHHHHHhhccchhh-hhHHhhccchhhHHHHHHHHH
Confidence 367788 88899999999999999999998 999999999998777766654
No 256
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=87.92 E-value=0.52 Score=54.08 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=27.9
Q ss_pred hCCCCEEEEcHHHHHhch--hhh-ccCCccEEEEcCCccCC
Q 001037 37 ALKFNVLVTTYEFIMYDR--SKL-SKVDWKYIIIDEAQRMK 74 (1179)
Q Consensus 37 ~~~~dVVITTYE~L~~d~--~~L-~ki~wdlVIIDEAHriK 74 (1179)
....+|||++|.+|..+. ..+ ......+|||||||++-
T Consensus 209 ~~~Adivi~ny~yll~~~~r~~~~~~l~~~~lIiDEAHnL~ 249 (289)
T smart00488 209 IEFANVVVLPYQYLLDPKIRQALSIELKDSIVIFDEAHNLD 249 (289)
T ss_pred hhcCCEEEECHHHHhcHHHHHHhcccccccEEEEeCccChH
Confidence 346799999999998653 221 12256899999999984
No 257
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=87.92 E-value=0.52 Score=54.08 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=27.9
Q ss_pred hCCCCEEEEcHHHHHhch--hhh-ccCCccEEEEcCCccCC
Q 001037 37 ALKFNVLVTTYEFIMYDR--SKL-SKVDWKYIIIDEAQRMK 74 (1179)
Q Consensus 37 ~~~~dVVITTYE~L~~d~--~~L-~ki~wdlVIIDEAHriK 74 (1179)
....+|||++|.+|..+. ..+ ......+|||||||++-
T Consensus 209 ~~~Adivi~ny~yll~~~~r~~~~~~l~~~~lIiDEAHnL~ 249 (289)
T smart00489 209 IEFANVVVLPYQYLLDPKIRQALSIELKDSIVIFDEAHNLD 249 (289)
T ss_pred hhcCCEEEECHHHHhcHHHHHHhcccccccEEEEeCccChH
Confidence 346799999999998653 221 12256899999999984
No 258
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=87.29 E-value=0.1 Score=51.19 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=42.1
Q ss_pred cccccc-CCCCccccCchhhhhcCCCCccccccccccc---ccccccCCCcccccc
Q 001037 670 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEE---GEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 670 ~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 721 (1179)
..+.|| .+|+. .+|+|++++++|++++. +..+|++ |+|....+-..|+..
T Consensus 20 ~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~t-I~~kL~~~~~~~Y~s~~~f~~D~~l 73 (109)
T cd05502 20 ELSLPFHEPVSP-SVPNYYKIIKTPMDLSL-IRKKLQPKSPQHYSSPEEFVADVRL 73 (109)
T ss_pred CCChhhcCCCCC-CCCCHHHHCCCCccHHH-HHHHHhcCCCCCCCCHHHHHHHHHH
Confidence 457888 77777 89999999999999998 9999999 699888777666654
No 259
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=87.15 E-value=0.1 Score=51.54 Aligned_cols=43 Identities=7% Similarity=0.030 Sum_probs=38.3
Q ss_pred CCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 678 VSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 678 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
+.+.++|+|+.++++||+++. |..+|+.|+|....+--.|+..
T Consensus 31 ~~~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~Dv~L 73 (109)
T cd05492 31 GKATKLPKRRRLIHTHLDVAD-IQEKINSEKYTSLEEFKADALL 73 (109)
T ss_pred chhccCCCHHHHhCCCCcHHH-HHHHHHcCCCCCHHHHHHHHHH
Confidence 456679999999999999999 9999999999999888887763
No 260
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=86.50 E-value=0.13 Score=49.45 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=39.9
Q ss_pred cccc-CCCCcc--ccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 672 TQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 672 ~~~~-~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
+.|| .++... .+|+|++++++|++++- +..+|+.|.|....+-..|+.+
T Consensus 18 ~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~t-I~~kL~~~~Y~s~~ef~~D~~l 69 (99)
T cd05506 18 GWVFNAPVDVVALGLPDYFDIIKKPMDLGT-VKKKLEKGEYSSPEEFAADVRL 69 (99)
T ss_pred CccccCCCCccccCCCCHHHHHcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHH
Confidence 4577 555544 79999999999999988 9999999999988776666554
No 261
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=85.27 E-value=0.13 Score=48.01 Aligned_cols=52 Identities=23% Similarity=0.340 Sum_probs=45.2
Q ss_pred ccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 669 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 669 ~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
+....+| .+|+...+|+|+.++++|++++. +..+|+.|+|....+...|+.+
T Consensus 17 ~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~-I~~kl~~~~Y~s~~~f~~D~~l 69 (99)
T cd04369 17 RDLSEPFLEPVDPKEAPDYYEVIKNPMDLST-IKKKLKNGEYKSLEEFEADVRL 69 (99)
T ss_pred ccccHHHhcCCChhcCCCHHHHHhCcccHHH-HHHHHhcCCCCCHHHHHHHHHH
Confidence 3567788 88888999999999999999988 9999999999988887777654
No 262
>PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex
Probab=85.02 E-value=0.55 Score=43.21 Aligned_cols=22 Identities=18% Similarity=0.554 Sum_probs=18.3
Q ss_pred cchhhcccccchHHHhhchHHH
Q 001037 513 WIEEMTRYDQVPKWLRASTKEV 534 (1179)
Q Consensus 513 ~~~~l~~~~~~p~~~~~~~~~~ 534 (1179)
...|||..+|||+||..+....
T Consensus 16 ~p~RLm~e~ELPe~~~~d~~~~ 37 (74)
T PF14619_consen 16 YPSRLMEESELPEWYREDIEEE 37 (74)
T ss_pred CCccccchhhchHHHHhcchhh
Confidence 4569999999999999876655
No 263
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.68 E-value=6.4 Score=48.85 Aligned_cols=95 Identities=15% Similarity=0.180 Sum_probs=71.1
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHc-CCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeee
Q 001037 264 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 342 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~-Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlS 342 (1179)
..+||..+...++......|.++||.+.....+..+.+.|+.. +..+..++|.++..+|.....+... +++.|++.+
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~--g~~~IVVGT 83 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKN--GEILVVIGT 83 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHc--CCCCEEECC
Confidence 5689999999989888888999999999999888888888754 7788999999999998887776653 344554444
Q ss_pred hhhhccCCCCcccceeeecC
Q 001037 343 IRAAGRGLNLQSADTVIIYD 362 (1179)
Q Consensus 343 T~AGgeGLNLQ~AdtVIi~D 362 (1179)
..+-. +-+.....||+-+
T Consensus 84 -rsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 84 -RSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred -hHHHc-CcccCCCEEEEEC
Confidence 44321 3355566666544
No 264
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=84.64 E-value=5.8 Score=51.00 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=71.0
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHH----HHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEE
Q 001037 264 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL----QWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 339 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L----~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VL 339 (1179)
..|||..+..-.+-.....|.+++|.+.....+..+.+.| ...|+++..++|+++..+|..++....+ +.+.|+
T Consensus 291 TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~--g~~~Iv 368 (681)
T PRK10917 291 VGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIAS--GEADIV 368 (681)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhC--CCCCEE
Confidence 3578988665555445567889999999887776555544 4458999999999999999999999884 345676
Q ss_pred eeehhhhccCCCCcccceeeec
Q 001037 340 LLSIRAAGRGLNLQSADTVIIY 361 (1179)
Q Consensus 340 LlST~AGgeGLNLQ~AdtVIi~ 361 (1179)
+.+.......+.+.....||+=
T Consensus 369 VgT~~ll~~~v~~~~l~lvVID 390 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVIID 390 (681)
T ss_pred EchHHHhcccchhcccceEEEe
Confidence 6665556666777777776653
No 265
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=84.35 E-value=4.4 Score=52.88 Aligned_cols=105 Identities=20% Similarity=0.235 Sum_probs=75.9
Q ss_pred CCeEEEeehhHHHHHHHHHHHHH----cCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCccccee
Q 001037 283 GHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 358 (1179)
Q Consensus 283 g~KVLIFSqft~~ldiLe~~L~~----~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtV 358 (1179)
..-+|||-.-...++...+.|.. ..+.++-++|..+.++..+ -|+......+-++++|.++..+|++.....|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 45689998777777777777776 4577899999999988776 5664333435478999999999999999988
Q ss_pred e--------ecCCCC----------CcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 359 I--------IYDPDP----------NPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 359 I--------i~D~pW----------NP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
| .||+-- +-+...||-|||+|. .+=.+|+|.+
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~---~pGicyRLys 385 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT---GPGICYRLYS 385 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhccccccC---CCceEEEecC
Confidence 7 333322 223345777777774 4556788866
No 266
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=83.89 E-value=0.44 Score=47.45 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=33.9
Q ss_pred cccccc-CCCCc--cccCchhhhhcCCCCcccccccccccccc
Q 001037 670 RLTQIV-SPVSP--QKFGSLSALEARPGSLSKRMPDELEEGEI 709 (1179)
Q Consensus 670 ~~~~~~-~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 709 (1179)
..+.|| .+|+. ..+|+|++++++||+++. +...|+++++
T Consensus 19 ~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~t-i~~kl~~~~~ 60 (114)
T cd05494 19 EDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGT-KVNNIVETGA 60 (114)
T ss_pred CCCCCcCCCCCchhcCCCChhhhcCCCCChHH-HHHHHHcccc
Confidence 356788 77787 889999999999999998 8899999887
No 267
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=83.26 E-value=0.24 Score=48.16 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=41.8
Q ss_pred cccccc-CCCCc--cccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 670 RLTQIV-SPVSP--QKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 670 ~~~~~~-~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
..+.|| .+|+. ..+|+|++++++|++++. +..+|+.|.|....+-..|+..
T Consensus 20 ~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~t-I~~kl~~~~Y~s~~~f~~D~~l 73 (103)
T cd05500 20 KDARPFLVPVDPVKLNIPHYPTIIKKPMDLGT-IERKLKSNVYTSVEEFTADFNL 73 (103)
T ss_pred CCChhhcCCCCcccccCCCHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHH
Confidence 345677 66664 479999999999999998 9999999999988887777654
No 268
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=82.43 E-value=1.2 Score=57.18 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=29.3
Q ss_pred hCCCCEEEEcHHHHHhchhh-----hccCCccEEEEcCCccCC
Q 001037 37 ALKFNVLVTTYEFIMYDRSK-----LSKVDWKYIIIDEAQRMK 74 (1179)
Q Consensus 37 ~~~~dVVITTYE~L~~d~~~-----L~ki~wdlVIIDEAHriK 74 (1179)
....+||||++..+..+... |......++||||||++-
T Consensus 217 a~~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L~ 259 (697)
T PRK11747 217 IDEADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHLP 259 (697)
T ss_pred HhhCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccchH
Confidence 34679999999999987632 222357889999999994
No 269
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=82.19 E-value=6.8 Score=49.84 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=56.2
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccC-CCCccEEeeehhhhccCCCC--------
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH-DSDCFIFLLSIRAAGRGLNL-------- 352 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~-ds~i~VLLlST~AGgeGLNL-------- 352 (1179)
.|.-.|+||.+..+ ..+.+.|...---.+.+.|..+ .+..++++|+.. +....-+|+.|.+..+|+|+
T Consensus 470 ~G~~lvLfTS~~~~-~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 470 QGGTLVLTTAFSHI-SAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred CCCEEEEechHHHH-HHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 45667777777654 4455555432112244556443 567799999963 01112378889999999999
Q ss_pred c--ccceeeecCCCCCcchH
Q 001037 353 Q--SADTVIIYDPDPNPKNE 370 (1179)
Q Consensus 353 Q--~AdtVIi~D~pWNP~~~ 370 (1179)
+ .+..|||.-+|+-|..-
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp 566 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRS 566 (636)
T ss_pred CCCcccEEEEEeCCCCcCCh
Confidence 3 58999999999877543
No 270
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=81.50 E-value=9.2 Score=48.74 Aligned_cols=96 Identities=14% Similarity=0.123 Sum_probs=70.4
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHH----HcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEE
Q 001037 264 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ----WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 339 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~----~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VL 339 (1179)
..|||..+..-.+-.....|.+++|.+.....+..+.+.+. ..|+++..++|+++..+|..+++...+ +.+.|+
T Consensus 265 TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~--g~~~Ii 342 (630)
T TIGR00643 265 VGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIAS--GQIHLV 342 (630)
T ss_pred CCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhC--CCCCEE
Confidence 35789876544444445678899999998877776655554 448999999999999999999998874 345677
Q ss_pred eeehhhhccCCCCcccceeeec
Q 001037 340 LLSIRAAGRGLNLQSADTVIIY 361 (1179)
Q Consensus 340 LlST~AGgeGLNLQ~AdtVIi~ 361 (1179)
+.+....-..+.+.....||+=
T Consensus 343 VgT~~ll~~~~~~~~l~lvVID 364 (630)
T TIGR00643 343 VGTHALIQEKVEFKRLALVIID 364 (630)
T ss_pred EecHHHHhccccccccceEEEe
Confidence 7666666667777777766653
No 271
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=81.43 E-value=0.33 Score=47.39 Aligned_cols=40 Identities=15% Similarity=0.017 Sum_probs=35.0
Q ss_pred cccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 681 QKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 681 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
..+|+|+.++++||+++. +..+|+.|+|....+-..|+..
T Consensus 28 ~~~pdY~~iIk~PMDL~t-I~~kL~~~~Y~s~~ef~~D~~L 67 (102)
T cd05501 28 YYIRDYCQGIKEPMWLNK-VKERLNERVYHTVEGFVRDMRL 67 (102)
T ss_pred CCCCchHHHcCCCCCHHH-HHHHHcCCCCCCHHHHHHHHHH
Confidence 589999999999999998 9999999999987776666554
No 272
>PRK05580 primosome assembly protein PriA; Validated
Probab=81.09 E-value=9.9 Score=48.92 Aligned_cols=95 Identities=13% Similarity=0.114 Sum_probs=71.3
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHc-CCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeee
Q 001037 264 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 342 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~-Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlS 342 (1179)
..+||..+...++......|.++||.+.....+..+.+.|... |..+..++|+++..+|.+.......+ .+.|++ .
T Consensus 171 TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g--~~~IVV-g 247 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRG--EAKVVI-G 247 (679)
T ss_pred CCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcC--CCCEEE-e
Confidence 4579999988888887778999999999999888888888764 78899999999999998887777643 345544 4
Q ss_pred hhhhccCCCCcccceeeecC
Q 001037 343 IRAAGRGLNLQSADTVIIYD 362 (1179)
Q Consensus 343 T~AGgeGLNLQ~AdtVIi~D 362 (1179)
|..+- =+.+.....||+-+
T Consensus 248 Trsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 248 ARSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred ccHHh-cccccCCCEEEEEC
Confidence 44332 24455666666654
No 273
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.34 E-value=1.4 Score=56.59 Aligned_cols=37 Identities=19% Similarity=0.397 Sum_probs=27.0
Q ss_pred CCCCEEEEcHHHHHhch--hhh-ccCCccEEEEcCCccCC
Q 001037 38 LKFNVLVTTYEFIMYDR--SKL-SKVDWKYIIIDEAQRMK 74 (1179)
Q Consensus 38 ~~~dVVITTYE~L~~d~--~~L-~ki~wdlVIIDEAHriK 74 (1179)
...+|||++|.+|.... ..+ ....-.+|||||||++-
T Consensus 194 ~~advIi~pYnyl~dp~~r~~~~~~l~~~ivI~DEAHNL~ 233 (705)
T TIGR00604 194 PFANIVLLPYQYLLDPKIRSAVSIELKDSIVIFDEAHNLD 233 (705)
T ss_pred hcCCEEEechHHhcCHHHHHHhhcccccCEEEEECccchH
Confidence 46799999999997531 222 23345799999999984
No 274
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=78.59 E-value=1.5 Score=57.50 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=28.0
Q ss_pred hCCCCEEEEcHHHHHhchhhhcc--CCccEEEEcCCccCC
Q 001037 37 ALKFNVLVTTYEFIMYDRSKLSK--VDWKYIIIDEAQRMK 74 (1179)
Q Consensus 37 ~~~~dVVITTYE~L~~d~~~L~k--i~wdlVIIDEAHriK 74 (1179)
....+||||+|.++..+...... -...+|||||||++-
T Consensus 414 a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~ 453 (850)
T TIGR01407 414 AEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLP 453 (850)
T ss_pred HhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHH
Confidence 34679999999999887422111 245799999999984
No 275
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=78.57 E-value=1.8 Score=54.81 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=28.1
Q ss_pred hCCCCEEEEcHHHHHhchhh-hcc-CCccEEEEcCCccCC
Q 001037 37 ALKFNVLVTTYEFIMYDRSK-LSK-VDWKYIIIDEAQRMK 74 (1179)
Q Consensus 37 ~~~~dVVITTYE~L~~d~~~-L~k-i~wdlVIIDEAHriK 74 (1179)
....|||||++.++..+... ..- -.+++|||||||++-
T Consensus 180 a~~AdivItNHalL~~~~~~~~~iLP~~~~lIiDEAH~L~ 219 (636)
T TIGR03117 180 ARRCRILFCTHAMLGLAFRDKWGLLPQPDILIVDEAHLFE 219 (636)
T ss_pred cccCCEEEECHHHHHHHhhhhcCCCCCCCEEEEeCCcchH
Confidence 46789999999998875321 111 247899999999984
No 276
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=74.61 E-value=2.9 Score=41.05 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=30.9
Q ss_pred hhhccCCccEEEEcCCccCCChhhHHHHHHHhh--cCCcEEEEeccC
Q 001037 55 SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY--RCQRRLLLTGTP 99 (1179)
Q Consensus 55 ~~L~ki~wdlVIIDEAHriKN~~Sk~tkaL~~L--ka~~RLLLTGTP 99 (1179)
..+....-.+|||||+|++. .......+..+ .....++|+|||
T Consensus 81 ~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 44444445799999999983 25556666655 566689999999
No 277
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=73.96 E-value=3.2 Score=55.20 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=28.7
Q ss_pred hCCCCEEEEcHHHHHhchhhhcc--CCccEEEEcCCccCC
Q 001037 37 ALKFNVLVTTYEFIMYDRSKLSK--VDWKYIIIDEAQRMK 74 (1179)
Q Consensus 37 ~~~~dVVITTYE~L~~d~~~L~k--i~wdlVIIDEAHriK 74 (1179)
....+||||++.++..+...=.. -.++++||||||++-
T Consensus 429 a~~AdivItNHalLl~dl~~~~~ilp~~~~lViDEAH~l~ 468 (928)
T PRK08074 429 AKFADLVITNHALLLTDLTSEEPLLPSYEHIIIDEAHHFE 468 (928)
T ss_pred HhcCCEEEECHHHHHHHHhhhcccCCCCCeEEEECCchHH
Confidence 45689999999999987521111 247999999999984
No 278
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=73.90 E-value=19 Score=48.02 Aligned_cols=95 Identities=15% Similarity=0.134 Sum_probs=72.0
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHH----cCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEe
Q 001037 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 340 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~----~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLL 340 (1179)
.+||..+....+-.....|.+++|.+..+..+......|.. .++++..++|.++..++.+++..+.+ +.+.|++
T Consensus 482 GsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~--g~~dIVI 559 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELAS--GKIDILI 559 (926)
T ss_pred CccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHc--CCceEEE
Confidence 46898876655555556788999999999888887776654 36788899999999999999998884 3456767
Q ss_pred eehhhhccCCCCcccceeeec
Q 001037 341 LSIRAAGRGLNLQSADTVIIY 361 (1179)
Q Consensus 341 lST~AGgeGLNLQ~AdtVIi~ 361 (1179)
.+.......+.+.....||+=
T Consensus 560 GTp~ll~~~v~f~~L~llVID 580 (926)
T TIGR00580 560 GTHKLLQKDVKFKDLGLLIID 580 (926)
T ss_pred chHHHhhCCCCcccCCEEEee
Confidence 666666666777777776663
No 279
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=73.19 E-value=3.2 Score=54.38 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=28.6
Q ss_pred hCCCCEEEEcHHHHHhchhhhc-cCCccEEEEcCCccCC
Q 001037 37 ALKFNVLVTTYEFIMYDRSKLS-KVDWKYIIIDEAQRMK 74 (1179)
Q Consensus 37 ~~~~dVVITTYE~L~~d~~~L~-ki~wdlVIIDEAHriK 74 (1179)
....+||||++.++..+...-. --.+++|||||||++-
T Consensus 411 a~~AdivItNHall~~~~~~~~~~p~~~~lIiDEAH~l~ 449 (820)
T PRK07246 411 AKTARLLITNHAYFLTRVQDDKDFARNKVLVFDEAQKLM 449 (820)
T ss_pred HHhCCEEEEchHHHHHHHhhccCCCCCCEEEEECcchhH
Confidence 4567999999999887642111 1258999999999984
No 280
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=72.52 E-value=0.13 Score=63.86 Aligned_cols=233 Identities=10% Similarity=0.000 Sum_probs=153.0
Q ss_pred Ccccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCccccccCCCccccCCcCccccccchhhhcc
Q 001037 667 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRK 745 (1179)
Q Consensus 667 ~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (1179)
.|+-++..| .+|+++.||.||-.|..|++|+. +.-++.+|+|-..++-..||.--=.|..--...+
T Consensus 71 ~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~-ik~kv~k~~y~~~~~f~~D~~lm~ena~~~n~~d------------ 137 (629)
T KOG1827|consen 71 EGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQ-IKRKVKKGRYKRLSFFQLDFLLMTENARLYNRPD------------ 137 (629)
T ss_pred cCcccchhHhhccccccCCCcceeecCcccHHH-HHHHHHhcccccHHHHHHHHHHHHHHHHHhcCcc------------
Confidence 467788889 99999999999999999999987 8899999999998888888874333321111100
Q ss_pred cccccccCCCcCCcccccCCCCCcccCCCCccccccCCCCcchhccchhhhccCCCCccccCCCCcccccCCCCCCcccC
Q 001037 746 RSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIA 825 (1179)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (1179)
+. -++.-..|+..+- +..+. .+.-.+++++....
T Consensus 138 -------------------s~-----------~~~~s~~l~~~~~-------------~~~~~---~~d~e~s~~~~~~l 171 (629)
T KOG1827|consen 138 -------------------SL-----------IYKDSGELEKYFI-------------SLEDE---KKDGELSMESNEEL 171 (629)
T ss_pred -------------------hh-----------hhhhhhhhhcchh-------------hhhcc---ccchhhcccccccc
Confidence 00 0000000000000 00000 11112333333333
Q ss_pred CCcCccccccCCCCCCCCCCccchhccccccCCCcccCCCCCCCCCCCCcHHHHHHHHHHHHHHHHhhh-ccCCch-hHh
Q 001037 826 NAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIE-KEGHQI-VPL 903 (1179)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~-~~g~~~-~~~ 903 (1179)
....+|---.. |++. .++-+..+ -+--+++..| ..|+.. .+-
T Consensus 172 ~~~~l~~~~~~--------~~~i-------------~~~~~~~g---------------d~vlv~~~~d~~~p~v~~Ier 215 (629)
T KOG1827|consen 172 KAGGLHYHELG--------PVEI-------------DGTKYIVG---------------DYVLVQNPADNLKPIVAQIER 215 (629)
T ss_pred ccCCCCcccCC--------Cccc-------------cCcccccC---------------ceeeecCcccccCCceeeecc
Confidence 33322221000 0111 00111111 1123455555 778887 789
Q ss_pred hhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHhh
Q 001037 904 LTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKI 983 (1179)
Q Consensus 904 ~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~y~~~~se~~~~A~~l~~~f~~~~~~ 983 (1179)
|+++|.-...|.||.. +.-+.-++-..+++...||.....|..|+-++|-|++.|+.+..=+|.|+..|-+.+.-..-.
T Consensus 216 ~w~~~dg~k~~~~~w~-~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~dv~lces 294 (629)
T KOG1827|consen 216 LWKLPDGEKWPQGCWI-YRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEEDVFLCES 294 (629)
T ss_pred cccCcccccccceeEe-eCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccccceeeEEe
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999998776555554
Q ss_pred hcCCC--chHHhhh
Q 001037 984 AFPDT--DFREARS 995 (1179)
Q Consensus 984 ~~~~~--~~~~~~~ 995 (1179)
.|-++ .|.++|.
T Consensus 295 Ryn~~~K~f~kirs 308 (629)
T KOG1827|consen 295 RYNEQLKKFNKIRS 308 (629)
T ss_pred eeccchhhhccccC
Confidence 44433 5777776
No 281
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=69.34 E-value=72 Score=41.75 Aligned_cols=45 Identities=20% Similarity=0.215 Sum_probs=41.4
Q ss_pred cEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccC
Q 001037 337 FIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 381 (1179)
Q Consensus 337 ~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIG 381 (1179)
.-||.|--|+-||-+-+..=++.-+-+.-|-..-.|-+||..|+-
T Consensus 484 lRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLa 528 (985)
T COG3587 484 LRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLA 528 (985)
T ss_pred ceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeee
Confidence 458999999999999999999999999999999999999999983
No 282
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=68.25 E-value=6.4 Score=42.05 Aligned_cols=60 Identities=27% Similarity=0.362 Sum_probs=35.6
Q ss_pred hCCCCEEEEcHHHHHhchhhhccC--CccEEEEcCCccCCChhhHHHHHHHhh-cCCcEEEEeccCCCCC
Q 001037 37 ALKFNVLVTTYEFIMYDRSKLSKV--DWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLLLTGTPLQND 103 (1179)
Q Consensus 37 ~~~~dVVITTYE~L~~d~~~L~ki--~wdlVIIDEAHriKN~~Sk~tkaL~~L-ka~~RLLLTGTPiqN~ 103 (1179)
...++||+||...+.. ..+... .|++||||||-.+. ...++..+ ....+++|-|=|.|-.
T Consensus 168 l~~~~vi~~T~~~~~~--~~~~~~~~~~d~vIvDEAsq~~-----e~~~l~~l~~~~~~~vlvGD~~QLp 230 (236)
T PF13086_consen 168 LKEADVIFTTLSSAAS--PFLSNFKEKFDVVIVDEASQIT-----EPEALIPLSRAPKRIVLVGDPKQLP 230 (236)
T ss_dssp HHT-SEEEEETCGGG---CCGTT-----SEEEETTGGGS------HHHHHHHHTTTBSEEEEEE-TTS--
T ss_pred cccccccccccccchh--hHhhhhcccCCEEEEeCCCCcc-----hHHHHHHHHHhCCEEEEECChhhcC
Confidence 4468999999887733 334444 79999999998763 22333333 3448888899887643
No 283
>PRK10689 transcription-repair coupling factor; Provisional
Probab=67.90 E-value=31 Score=47.14 Aligned_cols=94 Identities=10% Similarity=0.067 Sum_probs=70.3
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHH----cCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEe
Q 001037 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 340 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~----~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLL 340 (1179)
.+||..+....+-.....|.+|+|.+..+..+..+...|.. .++.+..++|..+..++.+++....+ +.+.|++
T Consensus 631 GsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~--g~~dIVV 708 (1147)
T PRK10689 631 GFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAE--GKIDILI 708 (1147)
T ss_pred CcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHh--CCCCEEE
Confidence 46898866555444456789999999999888777776654 35677889999999999999888874 3456777
Q ss_pred eehhhhccCCCCcccceeee
Q 001037 341 LSIRAAGRGLNLQSADTVII 360 (1179)
Q Consensus 341 lST~AGgeGLNLQ~AdtVIi 360 (1179)
.+.......+++.....||+
T Consensus 709 gTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 709 GTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred ECHHHHhCCCCHhhCCEEEE
Confidence 77666666677777777765
No 284
>PRK14873 primosome assembly protein PriA; Provisional
Probab=67.41 E-value=24 Score=45.42 Aligned_cols=79 Identities=15% Similarity=0.047 Sum_probs=65.6
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHc-C-CeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeee
Q 001037 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-Q-LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 342 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~-G-i~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlS 342 (1179)
.|||.+.+.+++......|..+||...-......+...|+.+ | ..++.++...+..+|.+.-..... +..+| ++.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~--G~~~I-ViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLR--GQARV-VVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhC--CCCcE-EEE
Confidence 579999999999999999999999999988888888888765 4 679999999999999988888774 44555 555
Q ss_pred hhhh
Q 001037 343 IRAA 346 (1179)
Q Consensus 343 T~AG 346 (1179)
|+++
T Consensus 247 tRSA 250 (665)
T PRK14873 247 TRSA 250 (665)
T ss_pred ccee
Confidence 5654
No 285
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=66.26 E-value=4.6 Score=52.04 Aligned_cols=37 Identities=22% Similarity=0.462 Sum_probs=27.3
Q ss_pred hCCCCEEEEcHHHHHhch-hhhccCC--ccEEEEcCCccC
Q 001037 37 ALKFNVLVTTYEFIMYDR-SKLSKVD--WKYIIIDEAQRM 73 (1179)
Q Consensus 37 ~~~~dVVITTYE~L~~d~-~~L~ki~--wdlVIIDEAHri 73 (1179)
..+.+|+++.|.+|.... ..-.+++ -.+||+||||+|
T Consensus 220 ~edAdIIF~PYnYLiDp~iR~~~~v~LknsIVIfDEAHNi 259 (945)
T KOG1132|consen 220 KEDADIIFCPYNYLIDPKIRRSHKVDLKNSIVIFDEAHNI 259 (945)
T ss_pred cccCcEEEechhhhcCHhhhccccccccccEEEEeccccH
Confidence 346899999999998652 2223344 459999999997
No 286
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=63.78 E-value=5.4 Score=50.86 Aligned_cols=74 Identities=24% Similarity=0.275 Sum_probs=60.8
Q ss_pred cccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHH
Q 001037 908 WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLL 981 (1179)
Q Consensus 908 p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~y~~~~se~~~~A~~l~~~f~~~~ 981 (1179)
|..-..||=|.-.--=|+-|--|..||++..|.+++.|--|+..|+.||..|+..+--+-..+..|-+.|.-.|
T Consensus 1037 we~~~i~de~~~~fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~Tl 1110 (1113)
T KOG0644|consen 1037 WEMEPIPDEVDNRFPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRTL 1110 (1113)
T ss_pred cccCCCccccCCCCCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhhc
Confidence 44445555544434447889999999999999999999999999999999999999988888888888877654
No 287
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=61.64 E-value=18 Score=46.75 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=66.6
Q ss_pred hcccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHc-CCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEee
Q 001037 263 VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLL 341 (1179)
Q Consensus 263 v~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~-Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLl 341 (1179)
+..|||.+++.+++.+....|+.+||-..-......+...|+.+ |.++..++.+.+..+|...-.+.. .++.+|++.
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~--~G~~~vVIG 302 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRAR--RGEARVVIG 302 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHh--cCCceEEEE
Confidence 46789999999999999999999999998888877777777655 889999999999999998888887 455666554
Q ss_pred ehhh
Q 001037 342 SIRA 345 (1179)
Q Consensus 342 ST~A 345 (1179)
+ ++
T Consensus 303 t-RS 305 (730)
T COG1198 303 T-RS 305 (730)
T ss_pred e-ch
Confidence 4 44
No 288
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=61.56 E-value=27 Score=44.26 Aligned_cols=120 Identities=22% Similarity=0.279 Sum_probs=75.1
Q ss_pred cCHHHHHHHHHHHHh-----hcCCeEEEeehhHHHHHHHHHHHHHc---------CCeEEEEcCCCCHHHHHHHHHHhcc
Q 001037 266 CGKLWILDRILIKLQ-----RTGHRVLLFSTMTKLLDILEEYLQWR---------QLVYRRIDGTTSLEDRESAIVDFNS 331 (1179)
Q Consensus 266 SgKl~~L~~IL~el~-----~~g~KVLIFSqft~~ldiLe~~L~~~---------Gi~~~rIdGsts~eeRe~iI~~Fn~ 331 (1179)
.+-...|+..+..++ ....-+|||-.-.+.++..++.|..+ .+-++-|+.+.+.+...++ |..
T Consensus 451 ~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FeP 527 (902)
T KOG0923|consen 451 APEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEP 527 (902)
T ss_pred CCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCC
Confidence 344444444444332 24456888876555555555555432 4557889999997776554 553
Q ss_pred CCCCccEEeeehhhhccCCCCcccceeeecCCCC------Cc--------------chHHHHhhcccccCCcceEEEEEE
Q 001037 332 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP------NP--------------KNEEQAVARAHRIGQKREVKVIYM 391 (1179)
Q Consensus 332 ~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pW------NP--------------~~~eQAiGRIhRIGQkkeV~VyrL 391 (1179)
....++-+++.|..+...|++.+...|| ||-+ || +.-.||-||++|.|--+ .|+|
T Consensus 528 tP~gaRKVVLATNIAETSlTIdgI~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGK---CfRL 602 (902)
T KOG0923|consen 528 TPPGARKVVLATNIAETSLTIDGIKYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGK---CFRL 602 (902)
T ss_pred CCCCceeEEEeecchhhceeecCeEEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCc---eEEe
Confidence 3334555678889999999888877775 4433 33 34579999998887654 4555
Q ss_pred Ee
Q 001037 392 EA 393 (1179)
Q Consensus 392 va 393 (1179)
.+
T Consensus 603 Yt 604 (902)
T KOG0923|consen 603 YT 604 (902)
T ss_pred ec
Confidence 43
No 289
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=58.43 E-value=19 Score=42.44 Aligned_cols=63 Identities=22% Similarity=0.252 Sum_probs=33.0
Q ss_pred CCCcEEEEEcChhHHhHHHhhHhhh---CCCCEEEEcHHHHHhchh--hhccCCccEEEEcCCccCCC
Q 001037 13 PSVSCIYYVGAKDQRSRLFSQEVAA---LKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD 75 (1179)
Q Consensus 13 P~l~Vvvy~G~~~~R~~l~~~~~~~---~~~dVVITTYE~L~~d~~--~L~ki~wdlVIIDEAHriKN 75 (1179)
....+++..++......+....... ......+.....+..... ......+|+|||||||++..
T Consensus 30 ~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 30 EGKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred cCCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 3455566666655544332221111 122334444444444322 12334799999999999975
No 290
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=57.10 E-value=7.1 Score=49.28 Aligned_cols=80 Identities=11% Similarity=0.101 Sum_probs=47.5
Q ss_pred CeEEEeehhHHHHHHHHHHHHHcCCe-------EEEEcCCCCHHHHHHHHHHhccCCCCc-cEEeee--hhhhccCCCCc
Q 001037 284 HRVLLFSTMTKLLDILEEYLQWRQLV-------YRRIDGTTSLEDRESAIVDFNSHDSDC-FIFLLS--IRAAGRGLNLQ 353 (1179)
Q Consensus 284 ~KVLIFSqft~~ldiLe~~L~~~Gi~-------~~rIdGsts~eeRe~iI~~Fn~~ds~i-~VLLlS--T~AGgeGLNLQ 353 (1179)
.-||+|...-..+..+..++...|+- -+.+.-..+ -+.++..|...-..- -.||++ -.-.+||||+.
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~ 706 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFS 706 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccccc
Confidence 45777777777777777777766542 222222222 244666665321111 124444 24456999999
Q ss_pred c--cceeeecCCCCC
Q 001037 354 S--ADTVIIYDPDPN 366 (1179)
Q Consensus 354 ~--AdtVIi~D~pWN 366 (1179)
. |..||...+|+-
T Consensus 707 D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 707 DDLGRAVVVVGLPYP 721 (821)
T ss_pred cccccEEEEeecCCC
Confidence 5 899999998884
No 291
>PRK10536 hypothetical protein; Provisional
Probab=55.95 E-value=19 Score=41.07 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=40.5
Q ss_pred CEEEEcHHHHHhchhhhccCCccEEEEcCCccCCChhhHHHHHHHhhcCCcEEEEeccCCCCCh
Q 001037 41 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDL 104 (1179)
Q Consensus 41 dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriKN~~Sk~tkaL~~Lka~~RLLLTGTPiqN~l 104 (1179)
.|.|++..+++-. .+.-.+||||||+++-. ......+.++....+++|+|-|-|.++
T Consensus 161 ~Iei~~l~ymRGr-----tl~~~~vIvDEaqn~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 161 KVEIAPFAYMRGR-----TFENAVVILDEAQNVTA--AQMKMFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred cEEEecHHHhcCC-----cccCCEEEEechhcCCH--HHHHHHHhhcCCCCEEEEeCChhhccC
Confidence 4566666555432 13457999999999843 555566667788889999999987664
No 292
>PRK14873 primosome assembly protein PriA; Provisional
Probab=55.18 E-value=20 Score=46.13 Aligned_cols=93 Identities=13% Similarity=0.067 Sum_probs=59.7
Q ss_pred hhHHHHHHHHcCCCcEEEEEcCh--hHHhHHHhhHhhhCCCCEEEEcHHHHHhchhhhccCCccEEEEcCCccC--CChh
Q 001037 2 SMWQSELHKWLPSVSCIYYVGAK--DQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM--KDRE 77 (1179)
Q Consensus 2 sQW~~Ef~Kw~P~l~Vvvy~G~~--~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHri--KN~~ 77 (1179)
.|+..-|...|+...+.+|+..- .+|.+.+.. +..+...|||-|...+.. +|. +..+|||||=|.- |...
T Consensus 202 ~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~-~~~G~~~IViGtRSAvFa---P~~--~LgLIIvdEEhd~sykq~~ 275 (665)
T PRK14873 202 DRLEAALRALLGAGDVAVLSAGLGPADRYRRWLA-VLRGQARVVVGTRSAVFA---PVE--DLGLVAIWDDGDDLLAEPR 275 (665)
T ss_pred HHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHH-HhCCCCcEEEEcceeEEe---ccC--CCCEEEEEcCCchhhcCCC
Confidence 57888899999867788888743 444444433 456778999999986653 222 4679999999974 4332
Q ss_pred hHHH--HHHH----hhcCCcEEEEeccCC
Q 001037 78 SVLA--RDLD----RYRCQRRLLLTGTPL 100 (1179)
Q Consensus 78 Sk~t--kaL~----~Lka~~RLLLTGTPi 100 (1179)
+..+ +.+. .+..-..++-|+||-
T Consensus 276 ~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 276 APYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred CCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 2221 1111 223445677799994
No 293
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=50.50 E-value=4.6 Score=55.46 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=43.3
Q ss_pred ccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCccccc
Q 001037 669 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQ 720 (1179)
Q Consensus 669 ~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1179)
+.-+.|| .+|+.+-+|+||.+|++||++++ +..+|.-|.|.-.-+--.|++
T Consensus 1316 ~~~awPFlepVn~~~vp~Y~~IIk~Pmdl~t-ir~k~~~~~Y~~~eef~~Di~ 1367 (1404)
T KOG1245|consen 1316 HKAAWPFLEPVNPKEVPDYYDIIKKPMDLST-IREKLSKGIYPSPEEFATDIE 1367 (1404)
T ss_pred hhhcchhhccCChhhcccHHHHhcChhHHHH-HHHHHhcccCCCHHHHHHHHH
Confidence 3446899 99999999999999999999999 999999999987655555543
No 294
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=50.36 E-value=14 Score=40.67 Aligned_cols=43 Identities=37% Similarity=0.512 Sum_probs=21.9
Q ss_pred CccEEEEcCCccCCChhhHHHHHHHhhcCCcEEEEeccCCCCChH
Q 001037 61 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLK 105 (1179)
Q Consensus 61 ~wdlVIIDEAHriKN~~Sk~tkaL~~Lka~~RLLLTGTPiqN~l~ 105 (1179)
...+||||||+++. ...+-..+.++....+++++|-|.|.+..
T Consensus 119 ~~~~iIvDEaQN~t--~~~~k~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 119 DNAFIIVDEAQNLT--PEELKMILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp -SEEEEE-SGGG----HHHHHHHHTTB-TT-EEEEEE--------
T ss_pred cceEEEEecccCCC--HHHHHHHHcccCCCcEEEEecCceeecCC
Confidence 45899999999984 23444455566777899999999877654
No 295
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=48.36 E-value=1.1e+02 Score=39.38 Aligned_cols=94 Identities=14% Similarity=0.159 Sum_probs=65.8
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEeehhH----HHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEe
Q 001037 265 SCGKLWILDRILIKLQRTGHRVLLFSTMT----KLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 340 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~g~KVLIFSqft----~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLL 340 (1179)
.|||..+..--.-.....|.++.+....- +...-+..+|...|+.+..++|+++...|.+++++-.++ .+.|++
T Consensus 293 GSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G--~~~ivV 370 (677)
T COG1200 293 GSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASG--EIDIVV 370 (677)
T ss_pred CCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCC--CCCEEE
Confidence 46776544333333456788888887653 445567778888899999999999999999999999854 455544
Q ss_pred eehhhhccCCCCcccceeee
Q 001037 341 LSIRAAGRGLNLQSADTVII 360 (1179)
Q Consensus 341 lST~AGgeGLNLQ~AdtVIi 360 (1179)
.+-...-+.++++..-.||+
T Consensus 371 GTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 371 GTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred EcchhhhcceeecceeEEEE
Confidence 44333566777776666654
No 296
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=48.30 E-value=1.6e+02 Score=31.85 Aligned_cols=98 Identities=11% Similarity=0.134 Sum_probs=51.2
Q ss_pred hHHHHHHHHc--CCCcEEEEEcChhHHhH----HHhhHhhhCCCCEEEEcHHHHHhc-hhhhcc-CCccEEEEcCCccCC
Q 001037 3 MWQSELHKWL--PSVSCIYYVGAKDQRSR----LFSQEVAALKFNVLVTTYEFIMYD-RSKLSK-VDWKYIIIDEAQRMK 74 (1179)
Q Consensus 3 QW~~Ef~Kw~--P~l~Vvvy~G~~~~R~~----l~~~~~~~~~~dVVITTYE~L~~d-~~~L~k-i~wdlVIIDEAHriK 74 (1179)
+...++.+|. .....+++.|.+-.=+. .+..........++.++...+... ...+.. ...++|||||+|.+.
T Consensus 24 ~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~lLvIDdi~~l~ 103 (226)
T TIGR03420 24 ELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLEQADLVCLDDVEAIA 103 (226)
T ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHHhhcccCCEEEEeChhhhc
Confidence 4567788884 23344555554322221 111122223456776766655432 111211 134699999999986
Q ss_pred Ch---hhHHHHHHHhh-cCCcEEEEeccCC
Q 001037 75 DR---ESVLARDLDRY-RCQRRLLLTGTPL 100 (1179)
Q Consensus 75 N~---~Sk~tkaL~~L-ka~~RLLLTGTPi 100 (1179)
.. ...+...+..+ ....++++|+|..
T Consensus 104 ~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 104 GQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred CChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 42 23445445444 3345788888853
No 297
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=48.28 E-value=14 Score=47.10 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=28.1
Q ss_pred CCCCEEEEcHHHHHhchhhhcc----CCccEEEEcCCccCCC
Q 001037 38 LKFNVLVTTYEFIMYDRSKLSK----VDWKYIIIDEAQRMKD 75 (1179)
Q Consensus 38 ~~~dVVITTYE~L~~d~~~L~k----i~wdlVIIDEAHriKN 75 (1179)
...+|+|++|..+..+...=.. ..-.+|||||||++-+
T Consensus 193 ~~ad~vv~nh~~~~~~~~~~~~~~~~p~~~v~v~DEAH~l~d 234 (654)
T COG1199 193 ENADLVVTNHALLLADVALEESRILLPENDVVVFDEAHNLPD 234 (654)
T ss_pred hhCCEEEEccHHHHhHHHhhhhhccCCcccEEEEeccccchH
Confidence 4679999999999886322111 2467999999999954
No 298
>PF13173 AAA_14: AAA domain
Probab=47.68 E-value=19 Score=35.79 Aligned_cols=39 Identities=36% Similarity=0.455 Sum_probs=25.6
Q ss_pred CccEEEEcCCccCCChhhHHHHHHHhhcCCcEEEEeccCC
Q 001037 61 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPL 100 (1179)
Q Consensus 61 ~wdlVIIDEAHriKN~~Sk~tkaL~~Lka~~RLLLTGTPi 100 (1179)
.-.+|||||+|++.+....+-..+.. .....+++||.-.
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~-~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDN-GPNIKIILTGSSS 99 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHh-ccCceEEEEccch
Confidence 56789999999997643332222222 2356899999854
No 299
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.30 E-value=1.4e+02 Score=36.78 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=60.3
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeeh
Q 001037 264 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 343 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST 343 (1179)
..+||-.+ -+|.-+. .+..+||.+..+..+.-....|...|+....++|..+..++..++.... .+.+.|+++++
T Consensus 35 TGsGKTl~--y~lp~l~-~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~--~~~~~il~~TP 109 (470)
T TIGR00614 35 TGGGKSLC--YQLPALC-SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLK--DGKIKLLYVTP 109 (470)
T ss_pred CCCcHhHH--HHHHHHH-cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh--cCCCCEEEECH
Confidence 35678532 3344443 3557899999999888788888889999999999999998888888885 45677888887
Q ss_pred hhhcc
Q 001037 344 RAAGR 348 (1179)
Q Consensus 344 ~AGge 348 (1179)
.....
T Consensus 110 e~l~~ 114 (470)
T TIGR00614 110 EKCSA 114 (470)
T ss_pred HHHcC
Confidence 76543
No 300
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=42.90 E-value=2.1e+02 Score=30.26 Aligned_cols=90 Identities=21% Similarity=0.238 Sum_probs=53.0
Q ss_pred ccCHHHH-HHHHHHHHhh----cCCeEEEeehhHHHHHHHHHHHH----HcCCeEEEEcCCCCHHHHHHHHHHhccCCCC
Q 001037 265 SCGKLWI-LDRILIKLQR----TGHRVLLFSTMTKLLDILEEYLQ----WRQLVYRRIDGTTSLEDRESAIVDFNSHDSD 335 (1179)
Q Consensus 265 ~SgKl~~-L~~IL~el~~----~g~KVLIFSqft~~ldiLe~~L~----~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~ 335 (1179)
.+||... +..++..+.. .+.++||.+.....+..+...+. ..++.+..++|+.+..+....+ . ..
T Consensus 46 G~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~ 119 (203)
T cd00268 46 GSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL---K---RG 119 (203)
T ss_pred CCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh---c---CC
Confidence 4677544 5555555544 35689999988877766555443 3478888899988765544332 2 23
Q ss_pred ccEEeeehhhh-----ccCCCCcccceeee
Q 001037 336 CFIFLLSIRAA-----GRGLNLQSADTVII 360 (1179)
Q Consensus 336 i~VLLlST~AG-----geGLNLQ~AdtVIi 360 (1179)
+.|+++++... ..-+++...+.+|+
T Consensus 120 ~~iiv~T~~~l~~~l~~~~~~~~~l~~lIv 149 (203)
T cd00268 120 PHIVVATPGRLLDLLERGKLDLSKVKYLVL 149 (203)
T ss_pred CCEEEEChHHHHHHHHcCCCChhhCCEEEE
Confidence 55666664321 11245555555543
No 301
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=41.82 E-value=5.1e+02 Score=35.57 Aligned_cols=125 Identities=17% Similarity=0.241 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHhhcCCeEEEeehhHHHHHH----HHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeee
Q 001037 267 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDI----LEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 342 (1179)
Q Consensus 267 gKl~~L~~IL~el~~~g~KVLIFSqft~~ldi----Le~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlS 342 (1179)
||.++..+..-.....|+.|.|.+..|-.++. +.+.|...++++..+.-=.+.++..++++... ++.+.|++.+
T Consensus 627 GKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la--~G~vDIvIGT 704 (1139)
T COG1197 627 GKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLA--EGKVDIVIGT 704 (1139)
T ss_pred cHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHh--cCCccEEEec
Confidence 79999988888888899999999988855544 55555555778888888889999999999998 5677788888
Q ss_pred hhhhccCCCCcccceeeecCCCCCcchHHHHhhccc--ccCC-cceEEEEEEEe--ehhhhhhh
Q 001037 343 IRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH--RIGQ-KREVKVIYMEA--VVDKISSH 401 (1179)
Q Consensus 343 T~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIh--RIGQ-kkeV~VyrLva--VEE~I~~~ 401 (1179)
-+..+.++-+.+--.||+ .++||.|=-| ++-+ +..|.|..|-| +..++...
T Consensus 705 HrLL~kdv~FkdLGLlII--------DEEqRFGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Ms 760 (1139)
T COG1197 705 HRLLSKDVKFKDLGLLII--------DEEQRFGVKHKEKLKELRANVDVLTLSATPIPRTLNMS 760 (1139)
T ss_pred hHhhCCCcEEecCCeEEE--------echhhcCccHHHHHHHHhccCcEEEeeCCCCcchHHHH
Confidence 777887777666655654 5688887443 2222 23578888866 44444433
No 302
>PRK04296 thymidine kinase; Provisional
Probab=41.48 E-value=50 Score=35.48 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=24.3
Q ss_pred cCCccEEEEcCCccCCChhhHHHHHHHhh-cCCcEEEEecc
Q 001037 59 KVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLLLTGT 98 (1179)
Q Consensus 59 ki~wdlVIIDEAHriKN~~Sk~tkaL~~L-ka~~RLLLTGT 98 (1179)
.-.+++|||||+|.+.. .++...+..+ .....+++||-
T Consensus 76 ~~~~dvviIDEaq~l~~--~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDK--EQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred CCCCCEEEEEccccCCH--HHHHHHHHHHHHcCCeEEEEec
Confidence 34789999999998832 3344444543 34456777764
No 303
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=41.15 E-value=39 Score=40.08 Aligned_cols=81 Identities=19% Similarity=0.200 Sum_probs=50.0
Q ss_pred CCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhch------hhhccCCccEEEEcCCccCCChhhHHHHHHHhh
Q 001037 14 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR------SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY 87 (1179)
Q Consensus 14 ~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~------~~L~ki~wdlVIIDEAHriKN~~Sk~tkaL~~L 87 (1179)
++++.++.|..+.-. .........+|||+|.+.+.... ..+...+..++|+|||.++.+. .....|..+
T Consensus 103 ~lK~~vivGG~d~i~---qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~--~f~d~L~~i 177 (442)
T KOG0340|consen 103 NLKVSVIVGGTDMIM---QAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAG--CFPDILEGI 177 (442)
T ss_pred cceEEEEEccHHHhh---hhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhcc--chhhHHhhh
Confidence 567777776644322 12223457899999999776431 1112224578999999999653 344444433
Q ss_pred ----c-CCcEEEEeccC
Q 001037 88 ----R-CQRRLLLTGTP 99 (1179)
Q Consensus 88 ----k-a~~RLLLTGTP 99 (1179)
. .+..++||||-
T Consensus 178 ~e~lP~~RQtLlfSATi 194 (442)
T KOG0340|consen 178 EECLPKPRQTLLFSATI 194 (442)
T ss_pred hccCCCccceEEEEeeh
Confidence 2 34689999994
No 304
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=40.82 E-value=49 Score=37.93 Aligned_cols=63 Identities=14% Similarity=0.260 Sum_probs=38.1
Q ss_pred hHHHHHHHHcCCCcEEEEEcCh--hHHhHHHhhHhhhCCCCEEEEcHHHHHhc--h-------hhhccCCccEEEEcCCc
Q 001037 3 MWQSELHKWLPSVSCIYYVGAK--DQRSRLFSQEVAALKFNVLVTTYEFIMYD--R-------SKLSKVDWKYIIIDEAQ 71 (1179)
Q Consensus 3 QW~~Ef~Kw~P~l~Vvvy~G~~--~~R~~l~~~~~~~~~~dVVITTYE~L~~d--~-------~~L~ki~wdlVIIDEAH 71 (1179)
+|...|.+|+ ++.+-+..... ..|+..+ ..+|+-+|-..+..| + .....-.++++||||+.
T Consensus 136 ~~~~~~y~~L-Glsv~~~~~~~~~~~r~~~Y-------~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvD 207 (266)
T PF07517_consen 136 EEMRPFYEFL-GLSVGIITSDMSSEERREAY-------AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVD 207 (266)
T ss_dssp HHHHHHHHHT-T--EEEEETTTEHHHHHHHH-------HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHH
T ss_pred HHHHHHHHHh-hhccccCccccCHHHHHHHH-------hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccc
Confidence 6888888888 56665554432 3344333 347888887776654 1 11123478999999987
Q ss_pred cC
Q 001037 72 RM 73 (1179)
Q Consensus 72 ri 73 (1179)
-+
T Consensus 208 s~ 209 (266)
T PF07517_consen 208 SI 209 (266)
T ss_dssp HH
T ss_pred eE
Confidence 65
No 305
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=40.59 E-value=37 Score=44.20 Aligned_cols=41 Identities=17% Similarity=0.326 Sum_probs=25.4
Q ss_pred CCccEEEEcCCccCCChh-hHHHHHHHhhcCCcEEEEeccCC
Q 001037 60 VDWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLTGTPL 100 (1179)
Q Consensus 60 i~wdlVIIDEAHriKN~~-Sk~tkaL~~Lka~~RLLLTGTPi 100 (1179)
-+|+++||||+|.|.+.. ..+.+.|.......+++|+.|=.
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 368999999999995321 12333333334456778877743
No 306
>PLN03025 replication factor C subunit; Provisional
Probab=40.30 E-value=38 Score=39.34 Aligned_cols=51 Identities=24% Similarity=0.337 Sum_probs=30.4
Q ss_pred CccEEEEcCCccCCCh-hhHHHHHHHhhcCCcEEEEeccCCCCChHHHHHHH
Q 001037 61 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLL 111 (1179)
Q Consensus 61 ~wdlVIIDEAHriKN~-~Sk~tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL 111 (1179)
.|.+|||||+|.+-.. ...+.+.+..+....+++|++++...-+..|.+-.
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 5899999999998421 11222333333445678888876554444454443
No 307
>PRK08084 DNA replication initiation factor; Provisional
Probab=40.11 E-value=1.3e+02 Score=33.34 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=34.8
Q ss_pred CCCCEEEEcHHHHHhc----hhhhccCCccEEEEcCCccCCChh---hHHHHHHHhhc-C-CcEEEEecc
Q 001037 38 LKFNVLVTTYEFIMYD----RSKLSKVDWKYIIIDEAQRMKDRE---SVLARDLDRYR-C-QRRLLLTGT 98 (1179)
Q Consensus 38 ~~~dVVITTYE~L~~d----~~~L~ki~wdlVIIDEAHriKN~~---Sk~tkaL~~Lk-a-~~RLLLTGT 98 (1179)
....|+.++.+..... ...+. ..++|||||+|.+.... ..+...+..+. . ...+++|++
T Consensus 72 ~~~~v~y~~~~~~~~~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~ 139 (235)
T PRK08084 72 RGRAVGYVPLDKRAWFVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGD 139 (235)
T ss_pred CCCeEEEEEHHHHhhhhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCC
Confidence 3567777777764332 12222 35799999999985422 22344444442 3 347888887
No 308
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=39.95 E-value=27 Score=46.45 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=40.4
Q ss_pred cEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhccccc
Q 001037 337 FIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 380 (1179)
Q Consensus 337 ~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRI 380 (1179)
.-||+|-.|+.||-+-+.+-.+.-+...-+...-.|-+||+.|+
T Consensus 502 ~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 502 RRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred eEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 34899999999999999999999999888999999999999997
No 309
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=38.94 E-value=20 Score=44.06 Aligned_cols=38 Identities=24% Similarity=0.416 Sum_probs=26.8
Q ss_pred CCCCEEEEcHHHHHhch--hhhcc--CCccEEEEcCCccCCC
Q 001037 38 LKFNVLVTTYEFIMYDR--SKLSK--VDWKYIIIDEAQRMKD 75 (1179)
Q Consensus 38 ~~~dVVITTYE~L~~d~--~~L~k--i~wdlVIIDEAHriKN 75 (1179)
.-.+|||-||.++...+ ...++ -+-.+||+||||+|-|
T Consensus 198 ~~~nvivYsYhYllDPkIa~~VSkels~~svVvFDEAHNIDn 239 (755)
T KOG1131|consen 198 PFANVIVYSYHYLLDPKIAELVSKELSKESVVVFDEAHNIDN 239 (755)
T ss_pred hcccEEEEehhhhcChHHHHHHHHhhCcCcEEEecccccccc
Confidence 34699999999987642 11111 1356899999999976
No 310
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=38.83 E-value=1.5e+02 Score=28.10 Aligned_cols=78 Identities=18% Similarity=0.135 Sum_probs=51.0
Q ss_pred ccCHHHHHHHHHHHHhh--cCCeEEEeehhHHHHHHHHHHHHHcC---CeEEEEcCCCCHHHHHHHHHHhccCCCCccEE
Q 001037 265 SCGKLWILDRILIKLQR--TGHRVLLFSTMTKLLDILEEYLQWRQ---LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 339 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~--~g~KVLIFSqft~~ldiLe~~L~~~G---i~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VL 339 (1179)
.+||-..+..++..+.. ...++||++........+...+.... ..+..+++........ ..+ .....|+
T Consensus 10 G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~i~ 83 (144)
T cd00046 10 GSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE---KLL---SGKTDIV 83 (144)
T ss_pred CCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH---HHh---cCCCCEE
Confidence 57898888887777665 55789999999888877777666543 7777777766543333 111 2234566
Q ss_pred eeehhhhcc
Q 001037 340 LLSIRAAGR 348 (1179)
Q Consensus 340 LlST~AGge 348 (1179)
+++......
T Consensus 84 i~t~~~~~~ 92 (144)
T cd00046 84 VGTPGRLLD 92 (144)
T ss_pred EECcHHHHH
Confidence 666554443
No 311
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=38.60 E-value=25 Score=40.93 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=29.3
Q ss_pred hhhhccCCccEEEEcCCccCC-ChhhHHHHHHH---hhc--CCcEEEEeccC
Q 001037 54 RSKLSKVDWKYIIIDEAQRMK-DRESVLARDLD---RYR--CQRRLLLTGTP 99 (1179)
Q Consensus 54 ~~~L~ki~wdlVIIDEAHriK-N~~Sk~tkaL~---~Lk--a~~RLLLTGTP 99 (1179)
...|..++..+|||||.|++- ....+.-..++ .|. -+--+.+.||+
T Consensus 138 ~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 138 LRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 356778899999999999963 33334434333 332 23346677886
No 312
>PRK05642 DNA replication initiation factor; Validated
Probab=35.88 E-value=1.3e+02 Score=33.37 Aligned_cols=61 Identities=16% Similarity=0.297 Sum_probs=38.4
Q ss_pred CCCCEEEEcHHHHHhchhhh-ccC-CccEEEEcCCccCCChh---hHHHHHHHhhc-CCcEEEEecc
Q 001037 38 LKFNVLVTTYEFIMYDRSKL-SKV-DWKYIIIDEAQRMKDRE---SVLARDLDRYR-CQRRLLLTGT 98 (1179)
Q Consensus 38 ~~~dVVITTYE~L~~d~~~L-~ki-~wdlVIIDEAHriKN~~---Sk~tkaL~~Lk-a~~RLLLTGT 98 (1179)
....|+.++.+.+......+ ..+ ..++||||+.|.+.+.. ..++..++.+. ...++++|+|
T Consensus 72 ~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 72 RGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 35678888887776542222 111 45899999999885432 33555555543 4567888887
No 313
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=35.75 E-value=1.4e+02 Score=28.52 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=26.4
Q ss_pred CccEEEEcCCccCCC-hhhHHHHHHHhhc------CCcEEEEeccCCCC
Q 001037 61 DWKYIIIDEAQRMKD-RESVLARDLDRYR------CQRRLLLTGTPLQN 102 (1179)
Q Consensus 61 ~wdlVIIDEAHriKN-~~Sk~tkaL~~Lk------a~~RLLLTGTPiqN 102 (1179)
...+||+||++++.. ........+..+. ....+++|+++...
T Consensus 84 ~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 84 KPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL 132 (151)
T ss_pred CCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcccc
Confidence 578999999999832 2223344444442 45577888877653
No 314
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=34.44 E-value=1.5e+02 Score=38.25 Aligned_cols=38 Identities=24% Similarity=0.440 Sum_probs=27.9
Q ss_pred CCCCEEEEcHHHHHhc--hhhh-ccCCccEEEEcCCccCCC
Q 001037 38 LKFNVLVTTYEFIMYD--RSKL-SKVDWKYIIIDEAQRMKD 75 (1179)
Q Consensus 38 ~~~dVVITTYE~L~~d--~~~L-~ki~wdlVIIDEAHriKN 75 (1179)
...++|+..|+.|... +..| ...+=.+|||||||++-+
T Consensus 322 p~aqlV~LPYQ~LL~~stR~slgI~LkdsIvIiDEAHNlid 362 (821)
T KOG1133|consen 322 PQAQLVTLPYQLLLHESTRKSLGISLKDSIVIIDEAHNLID 362 (821)
T ss_pred ccccEEeccHHHHHhHHHHHhcCccccccEEEEechhHHHH
Confidence 3568999999999876 2222 233567899999999865
No 315
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=33.82 E-value=29 Score=44.79 Aligned_cols=78 Identities=18% Similarity=0.235 Sum_probs=55.9
Q ss_pred EEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceee--------ecCC---------CC-CcchHH
Q 001037 310 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI--------IYDP---------DP-NPKNEE 371 (1179)
Q Consensus 310 ~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVI--------i~D~---------pW-NP~~~e 371 (1179)
++-+..=.+.++. +.-|......++.++++|.++...|+++...+|| +||. .| +-+.-.
T Consensus 607 vLPLYSLLs~~~Q---~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASad 683 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQ---MRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASAD 683 (1172)
T ss_pred EeehhhhcCHHHh---hhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccc
Confidence 4455555555544 3456665667899999999999999999999987 3333 34 445567
Q ss_pred HHhhcccccCCcceEEEEEEEe
Q 001037 372 QAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 372 QAiGRIhRIGQkkeV~VyrLva 393 (1179)
||-|||+|+|-- +.|+|.+
T Consensus 684 QRAGRAGRtgpG---HcYRLYS 702 (1172)
T KOG0926|consen 684 QRAGRAGRTGPG---HCYRLYS 702 (1172)
T ss_pred hhccccCCCCCC---ceeehhh
Confidence 999999998854 5677754
No 316
>PRK14701 reverse gyrase; Provisional
Probab=33.18 E-value=1.9e+02 Score=41.28 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=56.7
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHH------cCCeEEEEcCCCCHHHHHHHHHHhccCCCCcc
Q 001037 264 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW------RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~------~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~ 337 (1179)
..+||..+..-+...+...|.++||.+..+..+..+.+.|.. .++.++.++|+++..++...++.+.++ .+.
T Consensus 103 TGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g--~~d 180 (1638)
T PRK14701 103 TGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENG--DFD 180 (1638)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcC--CCC
Confidence 456887743332222334678999999999888887777765 256778899999999988888888743 345
Q ss_pred EEeeehhhh
Q 001037 338 IFLLSIRAA 346 (1179)
Q Consensus 338 VLLlST~AG 346 (1179)
||+.++.-.
T Consensus 181 ILV~TPgrL 189 (1638)
T PRK14701 181 ILVTTAQFL 189 (1638)
T ss_pred EEEECCchh
Confidence 666665433
No 317
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=32.31 E-value=2.7e+02 Score=29.54 Aligned_cols=72 Identities=24% Similarity=0.299 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHc--CCeEEE-EcCCCCHHHHHHHHHHhccCCCCccEEeee
Q 001037 269 LWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRR-IDGTTSLEDRESAIVDFNSHDSDCFIFLLS 342 (1179)
Q Consensus 269 l~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~--Gi~~~r-IdGsts~eeRe~iI~~Fn~~ds~i~VLLlS 342 (1179)
..++..++......+.+|-++-.....++.+.+.|+.. ++.++- .+|-...++...+++..+...++ ++++.
T Consensus 32 ~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pd--iv~vg 106 (171)
T cd06533 32 SDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGAD--ILFVG 106 (171)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCC--EEEEE
Confidence 35677788877777899999999999999999999876 777665 68888888877788888854444 55554
No 318
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=30.61 E-value=3.2e+02 Score=29.38 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHc--CCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeee
Q 001037 269 LWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 342 (1179)
Q Consensus 269 l~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~--Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlS 342 (1179)
..++..++......+.+|-++-.-..+++.+.+.|+.. ++.++-.+|-.+.++.+.+++.-+...+ .++++.
T Consensus 34 ~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~--dil~Vg 107 (177)
T TIGR00696 34 PDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGA--GIVFVG 107 (177)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCC--CEEEEE
Confidence 46777778777777889999999999999999999876 6776666898888777888888885443 355554
No 319
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=30.45 E-value=33 Score=42.47 Aligned_cols=62 Identities=18% Similarity=0.380 Sum_probs=39.4
Q ss_pred CCCCEEEEcHHHHHhchhhhccC---CccEEEEcCCccCCC-----hhhHHHHHHHhh---cC--------CcEEEEecc
Q 001037 38 LKFNVLVTTYEFIMYDRSKLSKV---DWKYIIIDEAQRMKD-----RESVLARDLDRY---RC--------QRRLLLTGT 98 (1179)
Q Consensus 38 ~~~dVVITTYE~L~~d~~~L~ki---~wdlVIIDEAHriKN-----~~Sk~tkaL~~L---ka--------~~RLLLTGT 98 (1179)
...+|+|.|...+..+...-..+ .-..||+|||.++.. .-+++.+++..+ .| ...+|||||
T Consensus 261 KGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSAT 340 (708)
T KOG0348|consen 261 KGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSAT 340 (708)
T ss_pred cCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhh
Confidence 46899999999988664322112 234599999999853 224455555332 12 235899999
Q ss_pred C
Q 001037 99 P 99 (1179)
Q Consensus 99 P 99 (1179)
-
T Consensus 341 L 341 (708)
T KOG0348|consen 341 L 341 (708)
T ss_pred h
Confidence 4
No 320
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.39 E-value=1.5e+02 Score=37.18 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=75.6
Q ss_pred CHHHH-HHHHHHHHhhcC-CeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehh
Q 001037 267 GKLWI-LDRILIKLQRTG-HRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 344 (1179)
Q Consensus 267 gKl~~-L~~IL~el~~~g-~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~ 344 (1179)
..+.. +..|+..+.... ..+|||-..---.-.|..++++.++.++.|+--++...-..+-.-|.. +...|+|.+-+
T Consensus 534 ~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~q--gr~~vlLyTER 611 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQ--GRKSVLLYTER 611 (698)
T ss_pred HHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHh--cCceEEEEehh
Confidence 45543 456667766544 456777644334455788999999999998887777777777788874 34557777755
Q ss_pred hhc-cCCCCcccceeeecCCCCCcchHHHHhhcc
Q 001037 345 AAG-RGLNLQSADTVIIYDPDPNPKNEEQAVARA 377 (1179)
Q Consensus 345 AGg-eGLNLQ~AdtVIi~D~pWNP~~~eQAiGRI 377 (1179)
+-= .-..+.+...||+|.||-||.-|---+-=.
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~ 645 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMS 645 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhh
Confidence 532 345678899999999999998876544333
No 321
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=30.28 E-value=2.9e+02 Score=29.26 Aligned_cols=72 Identities=19% Similarity=0.265 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHc--CCeEE-EEcCCCCHHHHHHHHHHhccCCCCccEEeee
Q 001037 269 LWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYR-RIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 342 (1179)
Q Consensus 269 l~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~--Gi~~~-rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlS 342 (1179)
..++..++......+.+|-++-.....++.+...|... ++.++ ..+|-.+.++...+++..+...+ .++++.
T Consensus 34 ~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~p--div~vg 108 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGP--DIVFVG 108 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCC--CEEEEE
Confidence 45677778777778889999999999999999999877 67766 56777777888999999985444 455554
No 322
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=30.17 E-value=94 Score=40.18 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=7.6
Q ss_pred hcChhHHHHHHHhhhh
Q 001037 495 ARSEDEVELFDQMDEE 510 (1179)
Q Consensus 495 aRseeE~~lf~~~D~e 510 (1179)
.++..++++--.+..|
T Consensus 316 ~t~p~dldfRlhlR~E 331 (1102)
T KOG1924|consen 316 VTSPSDLDFRLHLRSE 331 (1102)
T ss_pred cCCHHHhhHHHHHHHH
Confidence 4555555544444443
No 323
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=30.16 E-value=48 Score=41.73 Aligned_cols=58 Identities=22% Similarity=0.266 Sum_probs=39.4
Q ss_pred hCCCCEEEEcHHHHHhchhhhccCCccEEEEcCCccCCChhhHHHHHHHhhcCCcEEEEeccCCC
Q 001037 37 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 101 (1179)
Q Consensus 37 ~~~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriKN~~Sk~tkaL~~Lka~~RLLLTGTPiq 101 (1179)
.....||++|-..... ..+.+..||+||||||-.+.-+ +.+-.+.. ..+++|.|-|.|
T Consensus 336 i~n~~VVfaTl~ga~~--~~~~~~~fD~vIIDEaaQamE~--~cWipvlk---~kk~ILaGDp~Q 393 (649)
T KOG1803|consen 336 ISNSRVVFATLGGALD--RLLRKRTFDLVIIDEAAQAMEP--QCWIPVLK---GKKFILAGDPKQ 393 (649)
T ss_pred hcccceEEEeccchhh--hhhcccCCCEEEEehhhhhccc--hhhhHHhc---CCceEEeCCccc
Confidence 3456788877765444 5566678999999999776443 33333332 338999999976
No 324
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.99 E-value=85 Score=40.44 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=23.8
Q ss_pred CCccEEEEcCCccCCChhhHHHHHHHhh---cCCcEEEEecc
Q 001037 60 VDWKYIIIDEAQRMKDRESVLARDLDRY---RCQRRLLLTGT 98 (1179)
Q Consensus 60 i~wdlVIIDEAHriKN~~Sk~tkaL~~L---ka~~RLLLTGT 98 (1179)
-+|.++||||+|+|-. ......|+.| ....+++|..|
T Consensus 123 gr~KViIIDEah~Ls~--~AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 123 GRFKVYMIDEVHMLTN--HAFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred CCceEEEEEChHhcCH--HHHHHHHHhhccCCCCceEEEEeC
Confidence 3699999999999932 2333444555 33446666665
No 325
>PHA00673 acetyltransferase domain containing protein
Probab=29.61 E-value=96 Score=32.78 Aligned_cols=45 Identities=16% Similarity=0.136 Sum_probs=37.5
Q ss_pred CccEEEEcCCccCCChhhHHHHHHHhh---cCCcEEEEeccCCCCChH
Q 001037 61 DWKYIIIDEAQRMKDRESVLARDLDRY---RCQRRLLLTGTPLQNDLK 105 (1179)
Q Consensus 61 ~wdlVIIDEAHriKN~~Sk~tkaL~~L---ka~~RLLLTGTPiqN~l~ 105 (1179)
..+.|.|++.||=+.-.+++...+... ...++|-+||||..|...
T Consensus 87 ~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 87 TTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 367899999999888888888887765 567899999999998753
No 326
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=29.12 E-value=2.3e+02 Score=39.19 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=57.3
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHH----cCCeEE---EEcCCCCHHHHHHHHHHhccCCCCc
Q 001037 264 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----RQLVYR---RIDGTTSLEDRESAIVDFNSHDSDC 336 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~----~Gi~~~---rIdGsts~eeRe~iI~~Fn~~ds~i 336 (1179)
..+||...+.-++..+...+.++||.+..+..+..+...|.. .++... .++|+++..++...++.+.++ .+
T Consensus 102 TGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~--~~ 179 (1171)
T TIGR01054 102 TGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENG--DF 179 (1171)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcC--CC
Confidence 457888765555555555688999999999888777666654 344433 578999999998888888753 34
Q ss_pred cEEeeehhhhc
Q 001037 337 FIFLLSIRAAG 347 (1179)
Q Consensus 337 ~VLLlST~AGg 347 (1179)
.|++.++...-
T Consensus 180 dIlV~Tp~rL~ 190 (1171)
T TIGR01054 180 DILITTTMFLS 190 (1171)
T ss_pred CEEEECHHHHH
Confidence 56666655443
No 327
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=28.38 E-value=6.4e+02 Score=31.64 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhh--cCCeEEEeehhHHHHHHHHHHHHHc---------CCeEEEEcCCCCHHHHHHHHHHhc--cCCCC
Q 001037 269 LWILDRILIKLQR--TGHRVLLFSTMTKLLDILEEYLQWR---------QLVYRRIDGTTSLEDRESAIVDFN--SHDSD 335 (1179)
Q Consensus 269 l~~L~~IL~el~~--~g~KVLIFSqft~~ldiLe~~L~~~---------Gi~~~rIdGsts~eeRe~iI~~Fn--~~ds~ 335 (1179)
+++.++.+-++.. ...-+|||-.-...++..++.+... .++++-++ +.+.+.+.+--. ..+..
T Consensus 237 lEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~ 312 (699)
T KOG0925|consen 237 LEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAY 312 (699)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCc
Confidence 3444444444432 2345788865555555444444321 34555555 222222222111 11222
Q ss_pred ccEEeeehhhhccCCCCcccceeeecCCC------CCc-----------chHHHHhhcccccCCcceEEEEEEEe
Q 001037 336 CFIFLLSIRAAGRGLNLQSADTVIIYDPD------PNP-----------KNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 336 i~VLLlST~AGgeGLNLQ~AdtVIi~D~p------WNP-----------~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
-+-+++||..|...|.+...-+|| ||. +|| ..-.||.-|++|.|.+++-..++|.+
T Consensus 313 ~RkvVvstniaetsltidgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYt 385 (699)
T KOG0925|consen 313 GRKVVVSTNIAETSLTIDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYT 385 (699)
T ss_pred cceEEEEecchheeeeeccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeec
Confidence 344789999998888777655554 553 344 34568888888999999988888876
No 328
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=28.22 E-value=2.5e+02 Score=30.79 Aligned_cols=71 Identities=18% Similarity=0.115 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCC-------CHHHH------HHHHHHhccCCCCccEEeeeh--hh-hcc---------
Q 001037 294 KLLDILEEYLQWRQLVYRRIDGTT-------SLEDR------ESAIVDFNSHDSDCFIFLLSI--RA-AGR--------- 348 (1179)
Q Consensus 294 ~~ldiLe~~L~~~Gi~~~rIdGst-------s~eeR------e~iI~~Fn~~ds~i~VLLlST--~A-Gge--------- 348 (1179)
.....|..+....+..+++||.=. ....+ ...+..|.. .-++.|++++- +. .+.
T Consensus 110 ~l~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~-~~~~~ii~~~q~~r~~~~~~~~~~~~~~ 188 (242)
T cd00984 110 DIRSRARRLKKEHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAK-ELNVPVIALSQLSRGVESRADKRPMLSD 188 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHH-HhCCeEEEecccChhhhccCCCCCCHHH
Confidence 344444444455588888887521 11122 123444443 44566666662 11 111
Q ss_pred ----CCCCcccceeeecCCCC
Q 001037 349 ----GLNLQSADTVIIYDPDP 365 (1179)
Q Consensus 349 ----GLNLQ~AdtVIi~D~pW 365 (1179)
|.=-+.||.||++..+.
T Consensus 189 ~~gS~~i~~~aD~vi~l~~~~ 209 (242)
T cd00984 189 LRESGSIEQDADVVMFLYRDE 209 (242)
T ss_pred HhhhcccccCCCEEEEEeccc
Confidence 22245799999998775
No 329
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=27.59 E-value=63 Score=42.73 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=22.0
Q ss_pred CCccEEEEcCCccCCChhhHHHHHHHhh---cCCcEEEEecc
Q 001037 60 VDWKYIIIDEAQRMKDRESVLARDLDRY---RCQRRLLLTGT 98 (1179)
Q Consensus 60 i~wdlVIIDEAHriKN~~Sk~tkaL~~L---ka~~RLLLTGT 98 (1179)
-+|+++||||+|+|-. ......|+.| ....+++|..|
T Consensus 119 ~~~KV~IIDEad~lt~--~a~NaLLK~LEEpP~~~~fIl~tt 158 (824)
T PRK07764 119 SRYKIFIIDEAHMVTP--QGFNALLKIVEEPPEHLKFIFATT 158 (824)
T ss_pred CCceEEEEechhhcCH--HHHHHHHHHHhCCCCCeEEEEEeC
Confidence 3789999999999943 2222333333 34445555444
No 330
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=27.42 E-value=3.6e+02 Score=27.26 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=50.3
Q ss_pred cccCHHHHHHHHH-HHHhhc-CCeEEEeehhHHHHHHHHHHHHHc----CCeEEEEcCCCCHH-HHHHHHHHhccCCCCc
Q 001037 264 KSCGKLWILDRIL-IKLQRT-GHRVLLFSTMTKLLDILEEYLQWR----QLVYRRIDGTTSLE-DRESAIVDFNSHDSDC 336 (1179)
Q Consensus 264 ~~SgKl~~L~~IL-~el~~~-g~KVLIFSqft~~ldiLe~~L~~~----Gi~~~rIdGsts~e-eRe~iI~~Fn~~ds~i 336 (1179)
..+||-....-.+ ..+.+. ..++||.+.....+..+...+... ++.+..++|+.+.. +....+ . ..+
T Consensus 23 tGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~ 96 (169)
T PF00270_consen 23 TGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL---S---NQA 96 (169)
T ss_dssp TTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH---H---TTS
T ss_pred CCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccccccccccccccc---c---ccc
Confidence 3578888776444 444443 238999999988887777776654 46788889988754 333333 2 134
Q ss_pred cEEeeehhhhc
Q 001037 337 FIFLLSIRAAG 347 (1179)
Q Consensus 337 ~VLLlST~AGg 347 (1179)
.|++++....-
T Consensus 97 ~ilv~T~~~l~ 107 (169)
T PF00270_consen 97 DILVTTPEQLL 107 (169)
T ss_dssp SEEEEEHHHHH
T ss_pred cccccCcchhh
Confidence 57777766543
No 331
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=27.14 E-value=3.3e+02 Score=33.24 Aligned_cols=93 Identities=14% Similarity=0.165 Sum_probs=58.2
Q ss_pred cccCHHHH-HHHHHHHHhhc--CCeEEEeehhHHHHHHHHHHHHHc-----CCeEEEEcCCCCHHHHHHHHHHhccCCCC
Q 001037 264 KSCGKLWI-LDRILIKLQRT--GHRVLLFSTMTKLLDILEEYLQWR-----QLVYRRIDGTTSLEDRESAIVDFNSHDSD 335 (1179)
Q Consensus 264 ~~SgKl~~-L~~IL~el~~~--g~KVLIFSqft~~ldiLe~~L~~~-----Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~ 335 (1179)
..+||..+ +.-++..+... +.++||.+..+..+..+.+.+... ++.+..++|+++.......+. . .
T Consensus 50 TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~---~---~ 123 (460)
T PRK11776 50 TGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE---H---G 123 (460)
T ss_pred CCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc---C---C
Confidence 35678754 34445444322 347899999999888877766642 678889999998765443332 2 3
Q ss_pred ccEEeeehhhh-----ccCCCCcccceeeecC
Q 001037 336 CFIFLLSIRAA-----GRGLNLQSADTVIIYD 362 (1179)
Q Consensus 336 i~VLLlST~AG-----geGLNLQ~AdtVIi~D 362 (1179)
+.|+++++... ...++|...+.||+=+
T Consensus 124 ~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDE 155 (460)
T PRK11776 124 AHIIVGTPGRILDHLRKGTLDLDALNTLVLDE 155 (460)
T ss_pred CCEEEEChHHHHHHHHcCCccHHHCCEEEEEC
Confidence 44666554332 2356777777777533
No 332
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=26.99 E-value=50 Score=39.49 Aligned_cols=41 Identities=39% Similarity=0.468 Sum_probs=28.1
Q ss_pred CccEEEEcCCccCCChhhHHHHHHHhhcCCcEEEEeccCCCCC
Q 001037 61 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQND 103 (1179)
Q Consensus 61 ~wdlVIIDEAHriKN~~Sk~tkaL~~Lka~~RLLLTGTPiqN~ 103 (1179)
.-.+||||||+++-. ..+--.+.+.-...++.|||-|.|-+
T Consensus 351 ~~~FiIIDEaQNLTp--heikTiltR~G~GsKIVl~gd~aQiD 391 (436)
T COG1875 351 PDSFIIIDEAQNLTP--HELKTILTRAGEGSKIVLTGDPAQID 391 (436)
T ss_pred ccceEEEehhhccCH--HHHHHHHHhccCCCEEEEcCCHHHcC
Confidence 346899999999842 22333344556677999999987643
No 333
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=26.89 E-value=3e+02 Score=27.08 Aligned_cols=65 Identities=14% Similarity=0.049 Sum_probs=42.4
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcc
Q 001037 307 QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA 377 (1179)
Q Consensus 307 Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRI 377 (1179)
..-++.+.|... .....++...+..+.+.||++...... ...++.|=.++.|.|.....++..|+
T Consensus 43 ~~~~~v~~g~~~--~~~~~l~~l~~~~~~~Pvlllg~~~~~----~~~~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 43 WEACAVILGSCS--KLAELLKELLKWAPHIPVLLLGEHDSP----EELPNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred CcEEEEEecCch--hHHHHHHHHHhhCCCCCEEEECCCCcc----ccccCeeEecCCCCCHHHHHHHHHHh
Confidence 334556677776 444445555444556777777644433 23445777799999999999998886
No 334
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=26.79 E-value=1.1e+02 Score=31.70 Aligned_cols=86 Identities=19% Similarity=0.028 Sum_probs=54.7
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehh
Q 001037 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 344 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~ 344 (1179)
...+...+.+++.+....|+||+|+|.-...+..|-+.|=...-.-..=+|-.... ......|+|..
T Consensus 11 ~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~-----------~~~~~PV~l~~-- 77 (142)
T PRK05728 11 LSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEG-----------PAAGQPVLLTW-- 77 (142)
T ss_pred chhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCC-----------CCCCCCEEEEc--
Confidence 44688899999999999999999999999999999888843221111112211100 01233454431
Q ss_pred hhccCCCCcccceeeecCCCC
Q 001037 345 AAGRGLNLQSADTVIIYDPDP 365 (1179)
Q Consensus 345 AGgeGLNLQ~AdtVIi~D~pW 365 (1179)
....|...++.+|+++..+
T Consensus 78 --~~~~~~~~~~~LinL~~~~ 96 (142)
T PRK05728 78 --PGKRNANHRDLLINLDGAV 96 (142)
T ss_pred --CCCCCCCCCcEEEECCCCC
Confidence 1123566788899998764
No 335
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=26.23 E-value=51 Score=42.77 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=24.0
Q ss_pred CCEEEEcHHHHHhchhh-hccCCccEEEEcCCcc
Q 001037 40 FNVLVTTYEFIMYDRSK-LSKVDWKYIIIDEAQR 72 (1179)
Q Consensus 40 ~dVVITTYE~L~~d~~~-L~ki~wdlVIIDEAHr 72 (1179)
-.|-++|-..|.+.... |.-.++..|||||||.
T Consensus 350 T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHE 383 (1172)
T KOG0926|consen 350 TSIKFMTDGVLLREIENDFLLTKYSVIILDEAHE 383 (1172)
T ss_pred ceeEEecchHHHHHHHHhHhhhhceeEEechhhh
Confidence 45777888888776422 3334799999999997
No 336
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=26.18 E-value=5e+02 Score=28.21 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=43.1
Q ss_pred CCCcEEEEEcChhHHh----HHHhhHhhhCCCCEEEEcHHHHHhchhhhccCCccEEEEcCCccCCCh-hhHHHHHHHhh
Q 001037 13 PSVSCIYYVGAKDQRS----RLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDR-ESVLARDLDRY 87 (1179)
Q Consensus 13 P~l~Vvvy~G~~~~R~----~l~~~~~~~~~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriKN~-~Sk~tkaL~~L 87 (1179)
.....+++.|.+-.=+ ..+..........+++++-..+......+ ...++|||||+|.+-.. ...+...+..+
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~liiDdi~~l~~~~~~~L~~~~~~~ 117 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAFDFD--PEAELYAVDDVERLDDAQQIALFNLFNRV 117 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHHhhc--ccCCEEEEeChhhcCchHHHHHHHHHHHH
Confidence 3445666776542222 22222222345566666655544332222 24678999999998432 12334444444
Q ss_pred c-CC-cEEEEeccC
Q 001037 88 R-CQ-RRLLLTGTP 99 (1179)
Q Consensus 88 k-a~-~RLLLTGTP 99 (1179)
. .. .++++|+|.
T Consensus 118 ~~~~~~~vl~~~~~ 131 (227)
T PRK08903 118 RAHGQGALLVAGPA 131 (227)
T ss_pred HHcCCcEEEEeCCC
Confidence 3 22 346777764
No 337
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.72 E-value=62 Score=43.00 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=23.6
Q ss_pred CCccEEEEcCCccCCChhhHHHHHHHhh---cCCcEEEEeccC
Q 001037 60 VDWKYIIIDEAQRMKDRESVLARDLDRY---RCQRRLLLTGTP 99 (1179)
Q Consensus 60 i~wdlVIIDEAHriKN~~Sk~tkaL~~L---ka~~RLLLTGTP 99 (1179)
-+|.++||||+|+|. .......|+.| ....+++|..|-
T Consensus 118 gk~KViIIDEAh~LT--~eAqNALLKtLEEPP~~vrFILaTTe 158 (944)
T PRK14949 118 GRFKVYLIDEVHMLS--RSSFNALLKTLEEPPEHVKFLLATTD 158 (944)
T ss_pred CCcEEEEEechHhcC--HHHHHHHHHHHhccCCCeEEEEECCC
Confidence 368999999999994 22233333334 345567776543
No 338
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=25.42 E-value=2.2e+02 Score=31.97 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=26.3
Q ss_pred hhccCCccEEEEcCCccCCChh------hHHHHHHHhh---cCCcEEEEeccCCC
Q 001037 56 KLSKVDWKYIIIDEAQRMKDRE------SVLARDLDRY---RCQRRLLLTGTPLQ 101 (1179)
Q Consensus 56 ~L~ki~wdlVIIDEAHriKN~~------Sk~tkaL~~L---ka~~RLLLTGTPiq 101 (1179)
.|....-.+|+|||+|.+.... ..+...+..+ ....+++++|+|-.
T Consensus 100 ~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~ 154 (261)
T TIGR02881 100 VIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDE 154 (261)
T ss_pred HHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcch
Confidence 3444445799999999985311 1122222222 34457888888743
No 339
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=25.08 E-value=6.7e+02 Score=33.04 Aligned_cols=7 Identities=14% Similarity=0.283 Sum_probs=3.3
Q ss_pred HHHHHhc
Q 001037 324 SAIVDFN 330 (1179)
Q Consensus 324 ~iI~~Fn 330 (1179)
.+++.|-
T Consensus 214 rClka~m 220 (1102)
T KOG1924|consen 214 RCLKAFM 220 (1102)
T ss_pred HHHHHHh
Confidence 3445554
No 340
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=24.96 E-value=1.1e+02 Score=39.01 Aligned_cols=21 Identities=19% Similarity=0.493 Sum_probs=17.6
Q ss_pred hhhccCCccEEEEcCCccCCC
Q 001037 55 SKLSKVDWKYIIIDEAQRMKD 75 (1179)
Q Consensus 55 ~~L~ki~wdlVIIDEAHriKN 75 (1179)
.-+....|++|+|||||.++.
T Consensus 293 NsiRGQ~fnll~VDEA~FI~~ 313 (668)
T PHA03372 293 NSIRGQNFHLLLVDEAHFIKK 313 (668)
T ss_pred ccccCCCCCEEEEehhhccCH
Confidence 456677899999999999973
No 341
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.91 E-value=79 Score=39.26 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=22.5
Q ss_pred CccEEEEcCCccCCChhhHHHHHHHhh---cCCcEEEEeccC
Q 001037 61 DWKYIIIDEAQRMKDRESVLARDLDRY---RCQRRLLLTGTP 99 (1179)
Q Consensus 61 ~wdlVIIDEAHriKN~~Sk~tkaL~~L---ka~~RLLLTGTP 99 (1179)
++.++||||+|++-. ......|+.+ ....+++|+.|-
T Consensus 121 ~~KV~IIDEah~Ls~--~A~NALLKtLEEPp~~viFILaTte 160 (484)
T PRK14956 121 KYKVYIIDEVHMLTD--QSFNALLKTLEEPPAHIVFILATTE 160 (484)
T ss_pred CCEEEEEechhhcCH--HHHHHHHHHhhcCCCceEEEeecCC
Confidence 688999999999942 2333334444 233455555553
No 342
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=24.90 E-value=2.5e+02 Score=27.41 Aligned_cols=53 Identities=13% Similarity=-0.004 Sum_probs=38.0
Q ss_pred eEEEee----hhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeee
Q 001037 285 RVLLFS----TMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 342 (1179)
Q Consensus 285 KVLIFS----qft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlS 342 (1179)
|||++| .+.--+.++..+|+..|+.+..+...++.++-.+.+.+.+ ..++.+|
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~-----pdvV~iS 57 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEED-----ADAIGLS 57 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC-----CCEEEEe
Confidence 456664 4556678899999999999988888888777666666553 2355555
No 343
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=24.79 E-value=1.2e+02 Score=31.90 Aligned_cols=41 Identities=10% Similarity=0.033 Sum_probs=36.7
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHH
Q 001037 264 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ 304 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~ 304 (1179)
...+++.++.+|+.+....|.||+|.|.-...+..|-+.|=
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LW 50 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLW 50 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhc
Confidence 34678999999999999999999999999899999988884
No 344
>PRK04132 replication factor C small subunit; Provisional
Probab=24.69 E-value=70 Score=42.34 Aligned_cols=52 Identities=19% Similarity=0.344 Sum_probs=32.2
Q ss_pred CccEEEEcCCccCCC-hhhHHHHHHHhhcCCcEEEEeccCCCCChHHHHHHHh
Q 001037 61 DWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLN 112 (1179)
Q Consensus 61 ~wdlVIIDEAHriKN-~~Sk~tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~ 112 (1179)
++.+|||||||+|-. ....+.+.+.......+++|+.++...-+.-|.+-..
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~ 682 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 682 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhce
Confidence 578999999999942 1122333333334667889988876655555554433
No 345
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=24.32 E-value=4.9e+02 Score=33.90 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=14.7
Q ss_pred cccCcccHHHHHHHHHHHHhhhhhh
Q 001037 935 DRLEYNGVMELVSDVQFMLKGAMQF 959 (1179)
Q Consensus 935 ~~~~Y~~v~~~~~d~~lm~~na~~y 959 (1179)
.+..|+++-+-.+--+||--=++.|
T Consensus 839 ~~~~~d~ll~t~FKTEf~t~L~k~~ 863 (1106)
T KOG0162|consen 839 GNDQYDSLLETPFKTEFITLLKKRY 863 (1106)
T ss_pred cCCCcchHhhhhhHHHHHHHHHHHH
Confidence 3466666666666666665555544
No 346
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=24.25 E-value=1.4e+02 Score=36.35 Aligned_cols=77 Identities=14% Similarity=0.162 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhcc
Q 001037 271 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348 (1179)
Q Consensus 271 ~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGge 348 (1179)
-|.--|..|...| -.|||+....++.---+.|....+++-.++..++..+|.+++.+.....+.+++|-++...++.
T Consensus 50 SLCyQLPaL~~~g-ITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt 126 (641)
T KOG0352|consen 50 SLCYQLPALVHGG-ITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAAT 126 (641)
T ss_pred hhhhhchHHHhCC-eEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhh
Confidence 3444567777766 7899999999888888899989999999999999999999999999888888888888766553
No 347
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=24.12 E-value=3.4e+02 Score=26.07 Aligned_cols=59 Identities=10% Similarity=-0.011 Sum_probs=39.2
Q ss_pred cCCeEEEeeh------hHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeee
Q 001037 282 TGHRVLLFST------MTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 342 (1179)
Q Consensus 282 ~g~KVLIFSq------ft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlS 342 (1179)
..++|+||+. +-.....+..+|...|+.|..++=....+.+..+..... ...+..+++.
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg--~~tvP~vfi~ 74 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSN--WPTIPQLYVK 74 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhC--CCCCCEEEEC
Confidence 4589999964 234556788888999999988876555666666665554 3344444444
No 348
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=24.12 E-value=95 Score=33.54 Aligned_cols=39 Identities=33% Similarity=0.440 Sum_probs=24.5
Q ss_pred CccEEEEcCCccCCChhhHHHHHHHhhc-CCcEEEEeccCCC
Q 001037 61 DWKYIIIDEAQRMKDRESVLARDLDRYR-CQRRLLLTGTPLQ 101 (1179)
Q Consensus 61 ~wdlVIIDEAHriKN~~Sk~tkaL~~Lk-a~~RLLLTGTPiq 101 (1179)
..++||||||-.+-+ ..+...+..+. ...+++|.|-|.|
T Consensus 93 ~~~vliVDEasmv~~--~~~~~ll~~~~~~~~klilvGD~~Q 132 (196)
T PF13604_consen 93 KKDVLIVDEASMVDS--RQLARLLRLAKKSGAKLILVGDPNQ 132 (196)
T ss_dssp STSEEEESSGGG-BH--HHHHHHHHHS-T-T-EEEEEE-TTS
T ss_pred cccEEEEecccccCH--HHHHHHHHHHHhcCCEEEEECCcch
Confidence 458999999999842 33444444443 3679999999876
No 349
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=23.97 E-value=41 Score=39.75 Aligned_cols=43 Identities=28% Similarity=0.379 Sum_probs=31.9
Q ss_pred CccEEEEcCCccCCChhhHHHHHHHhhcCCcEEEEeccCCCCChH
Q 001037 61 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLK 105 (1179)
Q Consensus 61 ~wdlVIIDEAHriKN~~Sk~tkaL~~Lka~~RLLLTGTPiqN~l~ 105 (1179)
+--+||+||||+. .-.+.-..|.+|-...+..+||++.|-++.
T Consensus 243 ~dAfVIlDEaQNt--T~~QmKMfLTRiGf~skmvItGD~tQiDLp 285 (348)
T COG1702 243 NDAFVILDEAQNT--TVGQMKMFLTRIGFESKMVITGDITQIDLP 285 (348)
T ss_pred CCeEEEEeccccc--chhhhceeeeeecCCceEEEEcCcccccCC
Confidence 3458999999982 344555556677788899999999886643
No 350
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=23.91 E-value=4.2e+02 Score=33.71 Aligned_cols=72 Identities=8% Similarity=0.142 Sum_probs=46.4
Q ss_pred CCeEEEeehhHHHHHHHHHHHHH----cCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhc------cCCCC
Q 001037 283 GHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG------RGLNL 352 (1179)
Q Consensus 283 g~KVLIFSqft~~ldiLe~~L~~----~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGg------eGLNL 352 (1179)
+-++||.+....++..+.+.|.. .++.+..++|+.+......++.. .+.|+|++....- ..++|
T Consensus 84 ~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~------~~dIiV~TP~rL~~~l~~~~~~~l 157 (572)
T PRK04537 84 DPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQ------GVDVIIATPGRLIDYVKQHKVVSL 157 (572)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhC------CCCEEEECHHHHHHHHHhccccch
Confidence 35899999999888776665553 47889999999887665544431 3456666643321 13556
Q ss_pred cccceeee
Q 001037 353 QSADTVII 360 (1179)
Q Consensus 353 Q~AdtVIi 360 (1179)
..+.+||+
T Consensus 158 ~~v~~lVi 165 (572)
T PRK04537 158 HACEICVL 165 (572)
T ss_pred hheeeeEe
Confidence 66665554
No 351
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=23.78 E-value=2.9e+02 Score=28.60 Aligned_cols=86 Identities=21% Similarity=0.150 Sum_probs=56.1
Q ss_pred eEEEeehhHHHHHHHHHHHHHcCCe--EEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecC
Q 001037 285 RVLLFSTMTKLLDILEEYLQWRQLV--YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD 362 (1179)
Q Consensus 285 KVLIFSqft~~ldiLe~~L~~~Gi~--~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D 362 (1179)
.|-|++|.-.+...|...+..+|+. ++.=.|+...-.-.++++.|.+ |+.++++++- ++
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~-D~~t~~I~ly------------------~E 63 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAE-DPDTRVIVLY------------------LE 63 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT--SS--EEEEE------------------ES
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhc-CCCCCEEEEE------------------cc
Confidence 4678999999999999999988655 4555776555566788999986 8888887765 34
Q ss_pred CCCCcchHHHHhhcccccCCcceEEEEEEE
Q 001037 363 PDPNPKNEEQAVARAHRIGQKREVKVIYME 392 (1179)
Q Consensus 363 ~pWNP~~~eQAiGRIhRIGQkkeV~VyrLv 392 (1179)
.--||..+..+.-|+.|. |+|.++.-.
T Consensus 64 ~~~d~~~f~~~~~~a~~~---KPVv~lk~G 90 (138)
T PF13607_consen 64 GIGDGRRFLEAARRAARR---KPVVVLKAG 90 (138)
T ss_dssp --S-HHHHHHHHHHHCCC---S-EEEEE--
T ss_pred CCCCHHHHHHHHHHHhcC---CCEEEEeCC
Confidence 445788889988888764 899887653
No 352
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=22.79 E-value=3e+02 Score=39.04 Aligned_cols=74 Identities=22% Similarity=0.191 Sum_probs=50.7
Q ss_pred CCeEEEeehhHHHHHHHHHHHHH----------------cCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhh
Q 001037 283 GHRVLLFSTMTKLLDILEEYLQW----------------RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 346 (1179)
Q Consensus 283 g~KVLIFSqft~~ldiLe~~L~~----------------~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AG 346 (1179)
+-++|+.+........+...|+. .++.+..++|+++..+|.+++.. .+.|||.+....
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~------ppdILVTTPEsL 110 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRN------PPDILITTPESL 110 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcC------CCCEEEecHHHH
Confidence 45799999888887776666542 36788999999999988765542 234666666654
Q ss_pred cc-----C-CCCcccceeeecC
Q 001037 347 GR-----G-LNLQSADTVIIYD 362 (1179)
Q Consensus 347 ge-----G-LNLQ~AdtVIi~D 362 (1179)
-. + .+|....+||+=+
T Consensus 111 ~~LLtsk~r~~L~~Vr~VIVDE 132 (1490)
T PRK09751 111 YLMLTSRARETLRGVETVIIDE 132 (1490)
T ss_pred HHHHhhhhhhhhccCCEEEEec
Confidence 21 1 3577788887633
No 353
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=22.63 E-value=4.5e+02 Score=33.33 Aligned_cols=78 Identities=10% Similarity=0.075 Sum_probs=57.8
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeeh
Q 001037 264 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 343 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST 343 (1179)
..+||-.+. +|.-+.. +..+||.+..+..+.-....|...|+.+..++++++..++..++..... +.+.++++++
T Consensus 37 TG~GKTl~y--~lpal~~-~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~--~~~~il~~tp 111 (591)
T TIGR01389 37 TGGGKSLCY--QVPALLL-KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVN--GELKLLYVAP 111 (591)
T ss_pred CCccHhHHH--HHHHHHc-CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhC--CCCCEEEECh
Confidence 346776543 3444443 4467888999988887788888899999999999999999888888763 4566777766
Q ss_pred hhh
Q 001037 344 RAA 346 (1179)
Q Consensus 344 ~AG 346 (1179)
...
T Consensus 112 e~l 114 (591)
T TIGR01389 112 ERL 114 (591)
T ss_pred hHh
Confidence 554
No 354
>PRK13766 Hef nuclease; Provisional
Probab=22.59 E-value=4.3e+02 Score=34.57 Aligned_cols=93 Identities=15% Similarity=0.209 Sum_probs=58.0
Q ss_pred ccCHHHHHHHHHHHH-hhcCCeEEEeehhHHHHHHHHHHHHHc-C---CeEEEEcCCCCHHHHHHHHHHhccCCCCccEE
Q 001037 265 SCGKLWILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWR-Q---LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 339 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el-~~~g~KVLIFSqft~~ldiLe~~L~~~-G---i~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VL 339 (1179)
.+||.....-++..+ ...+.++||.+.....+......|... + ..+..++|.++..+|..+... ..|+
T Consensus 39 G~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~-------~~ii 111 (773)
T PRK13766 39 GLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEK-------AKVI 111 (773)
T ss_pred CccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhC-------CCEE
Confidence 467876444444333 345789999999887776666666543 3 378889999998887654332 3466
Q ss_pred eeehhhhc-----cCCCCcccceeeecCCC
Q 001037 340 LLSIRAAG-----RGLNLQSADTVIIYDPD 364 (1179)
Q Consensus 340 LlST~AGg-----eGLNLQ~AdtVIi~D~p 364 (1179)
++++.... .-+++...+.||+=+..
T Consensus 112 v~T~~~l~~~l~~~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 112 VATPQVIENDLIAGRISLEDVSLLIFDEAH 141 (773)
T ss_pred EECHHHHHHHHHcCCCChhhCcEEEEECCc
Confidence 76665442 23455566666655443
No 355
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=22.47 E-value=1.8e+02 Score=37.82 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=28.4
Q ss_pred CccEEEEcCCccCCChhhHHHHHHHhh---cCCcEEEEeccCCCCChHHHHHHH
Q 001037 61 DWKYIIIDEAQRMKDRESVLARDLDRY---RCQRRLLLTGTPLQNDLKELWSLL 111 (1179)
Q Consensus 61 ~wdlVIIDEAHriKN~~Sk~tkaL~~L---ka~~RLLLTGTPiqN~l~EL~sLL 111 (1179)
++.+|||||+|.+.. ......++.| ....+++|+.|=...-+.-+.+-+
T Consensus 119 k~KVIIIDEad~Ls~--~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC 170 (709)
T PRK08691 119 KYKVYIIDEVHMLSK--SAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRC 170 (709)
T ss_pred CcEEEEEECccccCH--HHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHH
Confidence 678999999999842 2222333333 344567777664444444444433
No 356
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=22.21 E-value=2.9e+02 Score=25.91 Aligned_cols=59 Identities=14% Similarity=0.017 Sum_probs=38.0
Q ss_pred cCCeEEEeeh------hHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeee
Q 001037 282 TGHRVLLFST------MTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 342 (1179)
Q Consensus 282 ~g~KVLIFSq------ft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlS 342 (1179)
.+++|+||+. +-.....+.++|...++.|..++=....+-+..+.+.-. ...+.++++.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g--~~tvP~vfi~ 70 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSN--WPTFPQLYVN 70 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhC--CCCCCEEEEC
Confidence 3579999986 445667888899999999988875545444444444322 3334444444
No 357
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=22.21 E-value=1e+02 Score=39.65 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=23.2
Q ss_pred CccEEEEcCCccCCChhhHHHHHHHhh---cCCcEEEEeccC
Q 001037 61 DWKYIIIDEAQRMKDRESVLARDLDRY---RCQRRLLLTGTP 99 (1179)
Q Consensus 61 ~wdlVIIDEAHriKN~~Sk~tkaL~~L---ka~~RLLLTGTP 99 (1179)
+|.++||||+|+|-. ......|+.| ....+++|+.|-
T Consensus 119 ~~KV~IIDEah~Ls~--~a~NALLKtLEEPp~~v~FIL~Tt~ 158 (647)
T PRK07994 119 RFKVYLIDEVHMLSR--HSFNALLKTLEEPPEHVKFLLATTD 158 (647)
T ss_pred CCEEEEEechHhCCH--HHHHHHHHHHHcCCCCeEEEEecCC
Confidence 689999999999842 2333344444 334466666553
No 358
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=21.79 E-value=65 Score=45.08 Aligned_cols=93 Identities=15% Similarity=0.212 Sum_probs=67.9
Q ss_pred EEEeehhHHHHHHHHHHHHHc-CCeEEEEcCCCCH-----------HHHHHHHHHhccCCCCccEEeeehhhhccCCCCc
Q 001037 286 VLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSL-----------EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ 353 (1179)
Q Consensus 286 VLIFSqft~~ldiLe~~L~~~-Gi~~~rIdGsts~-----------eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ 353 (1179)
-+||+....+...+.+.+... -.....++|.+.. -.+.+.+..|..+.-+ +|+.|.+.-+|+++.
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln---~L~~~~~~~e~~d~~ 371 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELN---LLIATSVLEEGVDVP 371 (1606)
T ss_pred heeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhh---HHHHHHHHHhhcchh
Confidence 478888777766666655543 2233336664321 1345677888754444 588889999999999
Q ss_pred ccceeeecCCCCCcchHHHHhhcccccC
Q 001037 354 SADTVIIYDPDPNPKNEEQAVARAHRIG 381 (1179)
Q Consensus 354 ~AdtVIi~D~pWNP~~~eQAiGRIhRIG 381 (1179)
.|+-||+++.+-+-..+.|+.||+-+.+
T Consensus 372 ~~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 372 KCNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhhheeccCcchHHHHHHhhcccccch
Confidence 9999999999999999999999997764
No 359
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=21.73 E-value=1e+02 Score=36.76 Aligned_cols=14 Identities=43% Similarity=0.994 Sum_probs=12.8
Q ss_pred CccEEEEcCCccCC
Q 001037 61 DWKYIIIDEAQRMK 74 (1179)
Q Consensus 61 ~wdlVIIDEAHriK 74 (1179)
.|.+|||||||.+-
T Consensus 141 ~~rVviIDeAd~l~ 154 (351)
T PRK09112 141 NWRIVIIDPADDMN 154 (351)
T ss_pred CceEEEEEchhhcC
Confidence 79999999999993
No 360
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=21.70 E-value=67 Score=41.93 Aligned_cols=95 Identities=25% Similarity=0.313 Sum_probs=0.0
Q ss_pred cccccccCCCCcccccccCCCcccccCCCCCCCCCCCCCCcccCCCcccCCccccCccccccccchhhhccCCCCCCCcc
Q 001037 590 EASSDERNGYPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEAGSSGSSSNSR 669 (1179)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (1179)
++++++ ..+...|+-+.+++|+|+-++-.+....+-|+.+++...-|.. .+-+|.-|+-.|+-
T Consensus 1404 ~dd~De--eeD~e~Ed~dEddd~edd~D~dd~~e~~~~D~~d~~~s~eDn~---------------de~sdeDGd~~d~~ 1466 (1516)
T KOG1832|consen 1404 DDDSDE--EEDDETEDEDEDDDEEDDLDRDDGLEGDNSDSGDDDLSSEDNE---------------DEVSDEDGDEADIL 1466 (1516)
T ss_pred ccccCc--cccchhhccccccccccccccccchhccccccccccccccccc---------------ccccCcccccccCC
Q ss_pred ccccccCCCCccccCchhhhhcCCCCcccccccccccccccccCCCccccccCCCccccCCcCccccccc
Q 001037 670 RLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQ 739 (1179)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1179)
.=. +.-.+|||||=-+-|||+ ..+.|++-++|
T Consensus 1467 ~D~--------------------------df~~eleeGedgdD~ds~------------D~Dee~~~~~~ 1498 (1516)
T KOG1832|consen 1467 IDG--------------------------DFMEELEEGEDGDDGDSE------------DEDEEDDGEMQ 1498 (1516)
T ss_pred CCh--------------------------HHHHHHhhcCCCCCCCcc------------ccchhhhhhhh
No 361
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=21.49 E-value=1.1e+02 Score=28.23 Aligned_cols=38 Identities=11% Similarity=0.171 Sum_probs=30.7
Q ss_pred hcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCC
Q 001037 281 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 318 (1179)
Q Consensus 281 ~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts 318 (1179)
..+.++|+||..-.........|+..|+.+..++|++.
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 45678999998766677778888999998889999874
No 362
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=21.47 E-value=87 Score=34.23 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=35.9
Q ss_pred hhhhccCCccEEEEcCCccCCC----hhhHHHHHHHhhcCCcEEEEeccCCCCChHHHHHHHh
Q 001037 54 RSKLSKVDWKYIIIDEAQRMKD----RESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLN 112 (1179)
Q Consensus 54 ~~~L~ki~wdlVIIDEAHriKN----~~Sk~tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~ 112 (1179)
...+..-.|++||+||.-.+-+ ....+...|..-...--|+|||.=.+..+.|+..++.
T Consensus 108 ~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlVT 170 (191)
T PRK05986 108 KRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLVT 170 (191)
T ss_pred HHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchhe
Confidence 3445566899999999877543 2234444444434445799999855444444444443
No 363
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.33 E-value=1.1e+02 Score=38.28 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=26.4
Q ss_pred CccEEEEcCCccCCChhhHHHHHHHhh---cCCcEEEEeccCCCCChHHHHH
Q 001037 61 DWKYIIIDEAQRMKDRESVLARDLDRY---RCQRRLLLTGTPLQNDLKELWS 109 (1179)
Q Consensus 61 ~wdlVIIDEAHriKN~~Sk~tkaL~~L---ka~~RLLLTGTPiqN~l~EL~s 109 (1179)
+|+++||||+|.+-. ......++.+ ....+++|..|-...-+.-+.+
T Consensus 119 ~~kV~iIDE~~~ls~--~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~S 168 (509)
T PRK14958 119 RFKVYLIDEVHMLSG--HSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLS 168 (509)
T ss_pred CcEEEEEEChHhcCH--HHHHHHHHHHhccCCCeEEEEEECChHhchHHHHH
Confidence 689999999999842 2222333333 3344566655544443433433
No 364
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=21.28 E-value=5.9e+02 Score=30.73 Aligned_cols=90 Identities=16% Similarity=0.173 Sum_probs=53.5
Q ss_pred ccCHHHH-HHHHHHHHhh------cCCeEEEeehhHHHHHHHHHHHH----HcCCeEEEEcCCCCHHHHHHHHHHhccCC
Q 001037 265 SCGKLWI-LDRILIKLQR------TGHRVLLFSTMTKLLDILEEYLQ----WRQLVYRRIDGTTSLEDRESAIVDFNSHD 333 (1179)
Q Consensus 265 ~SgKl~~-L~~IL~el~~------~g~KVLIFSqft~~ldiLe~~L~----~~Gi~~~rIdGsts~eeRe~iI~~Fn~~d 333 (1179)
.+||..+ +.-+|..+.. .+.++||.+.....+..+.+.+. ..++.+..++|++....+...+. .
T Consensus 48 GsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~---~-- 122 (434)
T PRK11192 48 GTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFS---E-- 122 (434)
T ss_pred CChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhc---C--
Confidence 4677653 3333433321 23579999998887766655443 45889999999998766554432 1
Q ss_pred CCccEEeeehhhhc-----cCCCCcccceeee
Q 001037 334 SDCFIFLLSIRAAG-----RGLNLQSADTVII 360 (1179)
Q Consensus 334 s~i~VLLlST~AGg-----eGLNLQ~AdtVIi 360 (1179)
.+.|+++++...- ..+++...+.||+
T Consensus 123 -~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lVi 153 (434)
T PRK11192 123 -NQDIVVATPGRLLQYIKEENFDCRAVETLIL 153 (434)
T ss_pred -CCCEEEEChHHHHHHHHcCCcCcccCCEEEE
Confidence 3446666653322 3455666666654
No 365
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=21.27 E-value=1.6e+02 Score=39.77 Aligned_cols=90 Identities=17% Similarity=0.296 Sum_probs=53.6
Q ss_pred hhHHHHHHHHcCCCcEEEEEc---ChhHHhHHHhhHhhhCCCCEEEEcHHHHHhc---------hhhhccCCccEEEEcC
Q 001037 2 SMWQSELHKWLPSVSCIYYVG---AKDQRSRLFSQEVAALKFNVLVTTYEFIMYD---------RSKLSKVDWKYIIIDE 69 (1179)
Q Consensus 2 sQW~~Ef~Kw~P~l~Vvvy~G---~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d---------~~~L~ki~wdlVIIDE 69 (1179)
..|.-.+.+|+ ++.|-+... +...|+..+ .+||+-+|-..|--| ...+..-.+.+.||||
T Consensus 227 aewmgply~fL-GLsvg~i~~~~~~~~~rr~aY-------~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDE 298 (1112)
T PRK12901 227 SEWMGPLYEFH-GLSVDCIDKHQPNSEARRKAY-------NADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDE 298 (1112)
T ss_pred HHHHHHHHHHh-CCceeecCCCCCCHHHHHHhC-------CCcceecCCCccccccchhccccchHhhhCcCCceeEeec
Confidence 36999999998 566655433 455555443 346665554332221 2333445789999999
Q ss_pred CccCCChhhHHHHHHHhh-cCCcEEEEeccCCCCChHHHHHHHh
Q 001037 70 AQRMKDRESVLARDLDRY-RCQRRLLLTGTPLQNDLKELWSLLN 112 (1179)
Q Consensus 70 AHriKN~~Sk~tkaL~~L-ka~~RLLLTGTPiqN~l~EL~sLL~ 112 (1179)
+.-+. + -++.-|++||. ..+...++|..++
T Consensus 299 vDSIL------------IDEARTPLIISGp-~~~~~~~~y~~~~ 329 (1112)
T PRK12901 299 VDSVL------------IDDARTPLIISGP-VPKGDDQEFEELK 329 (1112)
T ss_pred hhhhh------------hccccCcEEEeCC-CCCccHHHHHHHH
Confidence 98652 2 35667999985 4444445554444
No 366
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=21.05 E-value=5e+02 Score=33.23 Aligned_cols=78 Identities=12% Similarity=0.087 Sum_probs=57.0
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeeh
Q 001037 264 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 343 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST 343 (1179)
..+||-.+ -+|.-+.. +..+||.+..+..+....+.|...|+....+++..+.+++..++..... +.+.++++++
T Consensus 49 TGsGKTl~--y~lpal~~-~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~--g~~~il~~tP 123 (607)
T PRK11057 49 TGGGKSLC--YQIPALVL-DGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRT--GQIKLLYIAP 123 (607)
T ss_pred CCchHHHH--HHHHHHHc-CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhC--CCCcEEEECh
Confidence 45678543 23444443 3468888999999888888899999999999999998888877777763 4566776665
Q ss_pred hhh
Q 001037 344 RAA 346 (1179)
Q Consensus 344 ~AG 346 (1179)
...
T Consensus 124 e~l 126 (607)
T PRK11057 124 ERL 126 (607)
T ss_pred HHh
Confidence 543
No 367
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=21.04 E-value=76 Score=34.12 Aligned_cols=58 Identities=16% Similarity=0.306 Sum_probs=35.4
Q ss_pred hhhhccCCccEEEEcCCccCCC----hhhHHHHHHHhhcCCcEEEEeccCCCCChHHHHHHHhhh
Q 001037 54 RSKLSKVDWKYIIIDEAQRMKD----RESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLL 114 (1179)
Q Consensus 54 ~~~L~ki~wdlVIIDEAHriKN----~~Sk~tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~fL 114 (1179)
...+..-.||+||+||.-.+-+ ....+...|..-...--++|||.=.+ .+|..+.+++
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p---~~l~e~AD~V 151 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP---QDLLELADLV 151 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC---HHHHHhCcee
Confidence 3445566899999999986533 22344444444344557999998554 4444444433
No 368
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=20.81 E-value=56 Score=39.85 Aligned_cols=31 Identities=29% Similarity=0.462 Sum_probs=27.6
Q ss_pred CCcEEEEeccCCCCChHHHHHHHhhhcCCCC
Q 001037 89 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVF 119 (1179)
Q Consensus 89 a~~RLLLTGTPiqN~l~EL~sLL~fL~P~if 119 (1179)
.++..|+||||+.|.+.+.+++-++|.++.+
T Consensus 473 G~~L~l~sgTpi~ntlgem~~vqRyl~~~al 503 (637)
T COG4646 473 GRALVLASGTPITNTLGEMFSVQRYLGAGAL 503 (637)
T ss_pred CCeEEecCCCchhhhHHhhhhhhhhcCccHH
Confidence 4667999999999999999999999988754
No 369
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=20.72 E-value=82 Score=35.03 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=22.1
Q ss_pred CccEEEEcCCccCCChhhHHHHHHHhhc----CCcEEEEeccC
Q 001037 61 DWKYIIIDEAQRMKDRESVLARDLDRYR----CQRRLLLTGTP 99 (1179)
Q Consensus 61 ~wdlVIIDEAHriKN~~Sk~tkaL~~Lk----a~~RLLLTGTP 99 (1179)
.-.+|||||+|.+....-...+.+..+. ....++|||+|
T Consensus 123 ~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~ 165 (269)
T TIGR03015 123 KRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP 165 (269)
T ss_pred CCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH
Confidence 3468999999998532212222222221 12246899987
No 370
>PRK09401 reverse gyrase; Reviewed
Probab=20.63 E-value=4.9e+02 Score=36.14 Aligned_cols=95 Identities=14% Similarity=0.108 Sum_probs=59.5
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHc----CCeEEEEcCC--CCHHHHHHHHHHhccCCCCcc
Q 001037 264 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR----QLVYRRIDGT--TSLEDRESAIVDFNSHDSDCF 337 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~----Gi~~~rIdGs--ts~eeRe~iI~~Fn~~ds~i~ 337 (1179)
..+||..++.-++..+...+.++||.+..+..+..+.+.|+.. ++.+..+.|+ ++.+++......+..+ .+.
T Consensus 104 TGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~--~~~ 181 (1176)
T PRK09401 104 TGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEG--DFD 181 (1176)
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcC--CCC
Confidence 4578887655555455556889999999998888777777654 4555555443 4467777788888743 345
Q ss_pred EEeeehhhhcc---CCCCcccceeee
Q 001037 338 IFLLSIRAAGR---GLNLQSADTVII 360 (1179)
Q Consensus 338 VLLlST~AGge---GLNLQ~AdtVIi 360 (1179)
|+++++.-... .+.+...+.||+
T Consensus 182 IlV~Tp~rL~~~~~~l~~~~~~~lVv 207 (1176)
T PRK09401 182 ILVTTSQFLSKNFDELPKKKFDFVFV 207 (1176)
T ss_pred EEEECHHHHHHHHHhccccccCEEEE
Confidence 66666544332 233333555543
No 371
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=20.40 E-value=1.7e+02 Score=33.06 Aligned_cols=94 Identities=12% Similarity=0.118 Sum_probs=63.1
Q ss_pred eehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccC-CCCccEEeeehhhhccCCCCcccceeeecCCCCCc
Q 001037 289 FSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH-DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNP 367 (1179)
Q Consensus 289 FSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~-ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP 367 (1179)
.-.|.++...|...+.. ++.++.++++.+.+. -.|.+. +....+|++.-...+.||+|..-.+..+.-.+-+.
T Consensus 93 ~~s~~ei~~~l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~ 166 (239)
T PF10593_consen 93 PPSWEEIKPELPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQY 166 (239)
T ss_pred CcCHHHHHHHHHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchH
Confidence 34566677777777776 799999997665433 344431 21246788888999999999988877777666555
Q ss_pred chHHHHhhcc--cccCCcceEEEE
Q 001037 368 KNEEQAVARA--HRIGQKREVKVI 389 (1179)
Q Consensus 368 ~~~eQAiGRI--hRIGQkkeV~Vy 389 (1179)
..+.| +||- +|.|=..-|+||
T Consensus 167 DTL~Q-mgRwFGYR~gY~dl~Ri~ 189 (239)
T PF10593_consen 167 DTLMQ-MGRWFGYRPGYEDLCRIY 189 (239)
T ss_pred HHHHH-HhhcccCCcccccceEEe
Confidence 44444 5886 566644445555
No 372
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=20.33 E-value=1.5e+02 Score=26.71 Aligned_cols=38 Identities=11% Similarity=0.021 Sum_probs=31.4
Q ss_pred hcCCeEEEeehhHHHHHHHHHHHHHcCCe-EEEEcCCCC
Q 001037 281 RTGHRVLLFSTMTKLLDILEEYLQWRQLV-YRRIDGTTS 318 (1179)
Q Consensus 281 ~~g~KVLIFSqft~~ldiLe~~L~~~Gi~-~~rIdGsts 318 (1179)
..+..|||||..-.....+...|...|+. +..+.|++.
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 45688999997777778888999999998 788899874
No 373
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=20.31 E-value=4.1e+02 Score=36.05 Aligned_cols=80 Identities=20% Similarity=0.184 Sum_probs=52.8
Q ss_pred cCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHH----cC-CeEEE-EcCCCCHHHHHHHHHHhccCCCCccEE
Q 001037 266 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----RQ-LVYRR-IDGTTSLEDRESAIVDFNSHDSDCFIF 339 (1179)
Q Consensus 266 SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~----~G-i~~~r-IdGsts~eeRe~iI~~Fn~~ds~i~VL 339 (1179)
.||.....-+---+...|+|++|....+..+....+.|.. .+ ..... +||.++..++++++++|.++| ..|+
T Consensus 108 vGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gd--fdIl 185 (1187)
T COG1110 108 VGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGD--FDIL 185 (1187)
T ss_pred CchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCC--ccEE
Confidence 4676665555555556788888777776666655555543 33 33333 899999999999999999544 5565
Q ss_pred eeehhhhc
Q 001037 340 LLSIRAAG 347 (1179)
Q Consensus 340 LlST~AGg 347 (1179)
+.++.=..
T Consensus 186 itTs~FL~ 193 (1187)
T COG1110 186 ITTSQFLS 193 (1187)
T ss_pred EEeHHHHH
Confidence 55544433
No 374
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=20.21 E-value=7.4e+02 Score=26.91 Aligned_cols=85 Identities=8% Similarity=-0.006 Sum_probs=59.0
Q ss_pred CCeEEEee----hhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCccccee
Q 001037 283 GHRVLLFS----TMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 358 (1179)
Q Consensus 283 g~KVLIFS----qft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtV 358 (1179)
..+||++| .+.--+.++..+|+..|+.+..+--.++.++-.+.+.+.+ ..++.+|...
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~-----pd~v~lS~~~------------- 145 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEK-----PLMLTGSALM------------- 145 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC-----CCEEEEcccc-------------
Confidence 35888888 4455567899999999999999988999888777777765 2355555211
Q ss_pred eecCCCCCcchHHHHhhcccccCCcceEEEEE
Q 001037 359 IIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 390 (1179)
Q Consensus 359 Ii~D~pWNP~~~eQAiGRIhRIGQkkeV~Vyr 390 (1179)
.-+.....+.+..+.+.|....+.|+.
T Consensus 146 -----~~~~~~~~~~i~~l~~~~~~~~v~i~v 172 (197)
T TIGR02370 146 -----TTTMYGQKDINDKLKEEGYRDSVKFMV 172 (197)
T ss_pred -----ccCHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 123344567777777777666665543
Done!