Query 001037
Match_columns 1179
No_of_seqs 443 out of 2660
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 07:44:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001037.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001037hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 6.8E-60 2.3E-64 594.0 28.0 394 1-457 298-713 (800)
2 1z3i_X Similar to RAD54-like; 100.0 5E-57 1.7E-61 555.6 29.1 405 1-453 126-553 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 1E-52 3.4E-57 499.5 24.9 377 1-452 98-477 (500)
4 1z5z_A Helicase of the SNF2/RA 100.0 1.3E-37 4.3E-42 345.3 17.8 237 165-452 11-248 (271)
5 3dmq_A RNA polymerase-associat 100.0 1.2E-35 4.2E-40 380.3 30.7 373 1-408 212-631 (968)
6 1wp9_A ATP-dependent RNA helic 100.0 9.1E-32 3.1E-36 311.1 25.4 367 2-393 66-473 (494)
7 3hgt_A HDA1 complex subunit 3; 100.0 5.2E-29 1.8E-33 280.3 19.6 202 179-393 20-235 (328)
8 2fwr_A DNA repair protein RAD2 100.0 3.1E-28 1E-32 287.2 15.9 302 2-393 147-452 (472)
9 4a2p_A RIG-I, retinoic acid in 99.9 6.9E-26 2.4E-30 270.1 23.9 123 265-393 370-506 (556)
10 4a2q_A RIG-I, retinoic acid in 99.9 1.3E-25 4.4E-30 282.6 21.0 123 265-393 611-747 (797)
11 4a2w_A RIG-I, retinoic acid in 99.9 2.4E-25 8.1E-30 284.7 21.3 123 265-393 611-747 (936)
12 3tbk_A RIG-I helicase domain; 99.9 4.6E-25 1.6E-29 262.3 21.0 123 265-393 369-505 (555)
13 2dat_A Possible global transcr 99.9 3.2E-24 1.1E-28 211.3 12.3 118 866-984 2-119 (123)
14 2oca_A DAR protein, ATP-depend 99.9 2.5E-23 8.5E-28 247.7 21.1 280 2-393 171-456 (510)
15 2ykg_A Probable ATP-dependent 99.9 6.3E-23 2.2E-27 253.0 20.5 123 265-393 378-514 (696)
16 3iu5_A Protein polybromo-1; PB 99.9 7.8E-24 2.7E-28 206.5 9.6 113 874-987 2-114 (116)
17 4gl2_A Interferon-induced heli 99.9 1.1E-22 3.8E-27 251.0 20.5 113 266-381 380-509 (699)
18 3mb4_A Protein polybromo-1; PB 99.9 1.9E-23 6.6E-28 206.0 10.9 120 865-985 3-122 (124)
19 3mqm_A Probable histone-lysine 99.9 9.1E-23 3.1E-27 201.7 10.0 112 875-987 7-118 (126)
20 3ljw_A Protein polybromo-1; al 99.9 1.5E-22 5E-27 198.6 10.0 108 875-983 6-113 (120)
21 1xti_A Probable ATP-dependent 99.9 6.7E-21 2.3E-25 217.1 25.2 118 268-390 237-354 (391)
22 1hv8_A Putative ATP-dependent 99.9 2.2E-21 7.6E-26 218.1 16.5 117 268-390 226-342 (367)
23 3h1t_A Type I site-specific re 99.9 1.4E-21 4.7E-26 237.5 14.9 110 282-392 438-558 (590)
24 3k2j_A Protein polybromo-1; PB 99.9 7.6E-22 2.6E-26 196.1 10.0 115 869-984 9-123 (130)
25 1s2m_A Putative ATP-dependent 99.9 2.7E-20 9.1E-25 213.4 23.2 118 267-389 244-361 (400)
26 3tlp_A Protein polybromo-1; PB 99.8 8.5E-22 2.9E-26 200.4 8.6 121 873-994 20-143 (150)
27 2grc_A Probable global transcr 99.8 3.9E-21 1.3E-25 190.8 11.1 113 874-987 8-121 (129)
28 2j0s_A ATP-dependent RNA helic 99.8 1.1E-19 3.7E-24 209.3 24.3 118 268-390 263-380 (410)
29 3eiq_A Eukaryotic initiation f 99.8 1.5E-20 5.2E-25 215.8 15.1 118 267-389 266-383 (414)
30 2yyn_A Transcription intermedi 99.8 1.1E-20 3.6E-25 189.1 11.9 111 872-990 15-127 (135)
31 3iu6_A Protein polybromo-1; PB 99.8 7.1E-21 2.4E-25 190.8 10.6 110 874-988 4-113 (147)
32 2db3_A ATP-dependent RNA helic 99.8 7.1E-19 2.4E-23 206.4 24.7 116 268-389 288-403 (434)
33 2i4i_A ATP-dependent RNA helic 99.8 6.1E-19 2.1E-23 202.9 22.9 118 268-389 262-379 (417)
34 3pey_A ATP-dependent RNA helic 99.8 1.1E-18 3.7E-23 198.2 22.8 106 282-390 242-353 (395)
35 3g0l_A Hwalp4, bromodomain adj 99.8 6.8E-20 2.3E-24 178.8 10.9 115 866-987 2-116 (117)
36 2z0m_A 337AA long hypothetical 99.8 4E-19 1.4E-23 197.8 18.3 103 282-391 219-321 (337)
37 1oyw_A RECQ helicase, ATP-depe 99.8 2.5E-18 8.4E-23 207.0 24.6 251 2-390 79-340 (523)
38 1fuu_A Yeast initiation factor 99.8 4.5E-20 1.5E-24 210.2 8.6 118 268-390 246-363 (394)
39 3d7c_A General control of amin 99.8 2.4E-19 8.4E-24 173.7 11.4 103 875-984 5-107 (112)
40 3fht_A ATP-dependent RNA helic 99.8 4.7E-18 1.6E-22 194.6 23.2 117 268-389 253-375 (412)
41 3q2e_A Bromodomain and WD repe 99.8 1.7E-19 5.9E-24 177.6 8.8 107 874-987 7-114 (123)
42 2oss_A HUNK1 protein, bromodom 99.8 6E-19 2.1E-23 174.7 12.5 112 867-985 11-124 (127)
43 3mb3_A PH-interacting protein; 99.8 4.5E-19 1.5E-23 177.3 9.7 112 876-999 20-132 (135)
44 3oiy_A Reverse gyrase helicase 99.8 1.1E-17 3.9E-22 193.6 22.6 114 268-392 240-362 (414)
45 2d9e_A Peregrin; four-helix bu 99.8 5.8E-19 2E-23 173.4 9.8 102 876-984 6-107 (121)
46 2ouo_A HUNK1 protein, bromodom 99.8 7.4E-19 2.5E-23 174.7 9.9 111 869-984 15-127 (130)
47 2v1x_A ATP-dependent DNA helic 99.8 1.7E-17 5.6E-22 202.7 23.4 106 282-390 266-371 (591)
48 2i7k_A Bromodomain-containing 99.8 1.3E-18 4.4E-23 170.0 10.8 105 877-988 8-112 (117)
49 4alg_A Bromodomain-containing 99.8 1.2E-18 4.2E-23 177.8 10.7 107 872-985 27-135 (154)
50 1e6i_A Transcriptional activat 99.8 1.3E-18 4.5E-23 170.8 10.0 99 879-984 15-113 (121)
51 3jvl_A Bromodomain-containing 99.8 1.3E-18 4.5E-23 170.5 9.2 109 873-985 5-115 (120)
52 3nxb_A CAT eye syndrome critic 99.8 1.9E-18 6.6E-23 168.3 10.2 99 878-983 17-115 (116)
53 3u5n_A E3 ubiquitin-protein li 99.7 2E-18 6.8E-23 184.4 11.0 112 871-990 75-206 (207)
54 3o36_A Transcription intermedi 99.7 6.4E-18 2.2E-22 177.3 11.9 107 872-986 76-184 (184)
55 3sqw_A ATP-dependent RNA helic 99.7 1.5E-16 5.3E-21 193.0 25.7 107 281-390 286-395 (579)
56 3hme_A Bromodomain-containing 99.7 5E-18 1.7E-22 167.2 9.5 100 878-984 14-113 (123)
57 3rcw_A Bromodomain-containing 99.7 3.7E-18 1.3E-22 170.7 8.7 105 873-985 10-114 (135)
58 3fkm_X Signaling protein; brom 99.7 9.2E-18 3.1E-22 173.4 11.3 116 868-991 12-129 (166)
59 2eyq_A TRCF, transcription-rep 99.7 5.3E-17 1.8E-21 211.4 21.2 105 281-388 810-917 (1151)
60 3i5x_A ATP-dependent RNA helic 99.7 2E-16 6.7E-21 190.6 24.5 108 281-391 337-447 (563)
61 2r10_A Chromatin structure-rem 99.7 6E-19 2E-23 203.0 2.2 92 895-987 225-317 (361)
62 2ri7_A Nucleosome-remodeling f 99.7 6.7E-18 2.3E-22 175.5 9.9 107 871-984 66-172 (174)
63 3p1f_A CREB-binding protein; s 99.7 9.5E-18 3.2E-22 164.2 10.2 106 875-986 9-116 (119)
64 2hjv_A ATP-dependent RNA helic 99.7 8.8E-17 3E-21 164.0 15.2 121 264-389 18-138 (163)
65 2ro1_A Transcription intermedi 99.7 4.4E-17 1.5E-21 171.7 13.1 109 872-992 71-184 (189)
66 1t5i_A C_terminal domain of A 99.7 7E-17 2.4E-21 166.6 14.0 120 265-389 15-134 (172)
67 3fho_A ATP-dependent RNA helic 99.7 1.1E-17 3.8E-22 200.2 8.8 106 282-390 356-467 (508)
68 3uv5_A Transcription initiatio 99.7 3.6E-18 1.2E-22 189.0 3.6 105 879-985 134-238 (265)
69 3uv4_A Second bromodomain of h 99.7 4.4E-17 1.5E-21 167.0 11.1 108 876-985 24-131 (158)
70 2dkw_A Hypothetical protein KI 99.7 5.7E-17 2E-21 161.3 11.0 109 866-986 1-113 (131)
71 2jgn_A DBX, DDX3, ATP-dependen 99.7 9.2E-17 3.1E-21 167.9 11.8 121 264-388 28-148 (185)
72 3aad_A Transcription initiatio 99.7 1.5E-17 5.3E-22 186.2 5.5 87 897-984 184-270 (292)
73 1fuk_A Eukaryotic initiation f 99.7 2.8E-16 9.6E-21 160.4 13.4 117 268-389 17-133 (165)
74 3dai_A ATPase family AAA domai 99.7 1.9E-16 6.6E-21 157.3 11.8 108 878-993 11-122 (130)
75 3fmp_B ATP-dependent RNA helic 99.7 3.7E-17 1.3E-21 193.2 7.8 105 283-390 333-443 (479)
76 2p6n_A ATP-dependent RNA helic 99.7 2.4E-16 8.3E-21 165.7 12.9 118 265-388 39-156 (191)
77 1gm5_A RECG; helicase, replica 99.6 2E-16 7E-21 198.1 7.9 113 274-389 569-693 (780)
78 2rb4_A ATP-dependent RNA helic 99.6 1.5E-15 5.2E-20 156.5 12.5 120 267-393 20-145 (175)
79 3eaq_A Heat resistant RNA depe 99.6 3.5E-15 1.2E-19 159.0 15.0 120 264-388 14-133 (212)
80 2xgj_A ATP-dependent RNA helic 99.6 1.1E-14 3.7E-19 187.4 22.3 119 272-393 331-497 (1010)
81 2r0y_A Chromatin structure-rem 99.6 7.1E-16 2.4E-20 174.0 9.8 91 896-987 176-267 (311)
82 2r10_A Chromatin structure-rem 99.6 8E-16 2.7E-20 177.1 10.2 98 884-984 81-179 (361)
83 2r0y_A Chromatin structure-rem 99.6 5.5E-16 1.9E-20 174.9 8.1 101 877-984 28-129 (311)
84 2yjt_D ATP-dependent RNA helic 99.4 8.4E-17 2.9E-21 165.3 0.0 120 266-390 15-134 (170)
85 3uv5_A Transcription initiatio 99.6 3.2E-15 1.1E-19 165.3 10.4 103 876-985 13-115 (265)
86 2va8_A SSO2462, SKI2-type heli 99.6 8.4E-14 2.9E-18 173.0 22.7 112 279-393 248-406 (715)
87 3l9o_A ATP-dependent RNA helic 99.5 7.3E-14 2.5E-18 181.2 19.0 121 270-393 427-595 (1108)
88 2zj8_A DNA helicase, putative 99.5 1.9E-13 6.5E-18 170.1 21.1 110 281-393 235-385 (720)
89 3aad_A Transcription initiatio 99.5 6.2E-15 2.1E-19 165.2 6.8 102 876-984 46-147 (292)
90 3i32_A Heat resistant RNA depe 99.5 5.4E-14 1.9E-18 158.1 14.0 118 265-387 12-129 (300)
91 2p6r_A Afuhel308 helicase; pro 99.5 2.4E-13 8.1E-18 168.8 21.1 111 280-393 239-386 (702)
92 4a4z_A Antiviral helicase SKI2 99.5 2.2E-13 7.6E-18 175.2 18.2 120 267-392 322-489 (997)
93 4ddu_A Reverse gyrase; topoiso 99.5 1.6E-12 5.4E-17 168.8 22.8 87 268-365 297-388 (1104)
94 2jlq_A Serine protease subunit 99.4 1E-12 3.4E-17 155.3 10.4 95 282-384 187-301 (451)
95 1gku_B Reverse gyrase, TOP-RG; 99.3 3E-12 1E-16 165.8 13.8 74 283-364 275-352 (1054)
96 2v6i_A RNA helicase; membrane, 99.3 4.4E-12 1.5E-16 149.0 14.1 97 282-386 170-283 (431)
97 2w00_A HSDR, R.ECOR124I; ATP-b 99.3 5.1E-11 1.7E-15 153.3 24.4 112 283-398 537-712 (1038)
98 1yks_A Genome polyprotein [con 99.3 8.9E-12 3.1E-16 146.9 11.1 100 282-389 176-295 (440)
99 2wv9_A Flavivirin protease NS2 99.2 2.7E-11 9.1E-16 150.0 11.6 98 282-387 409-527 (673)
100 2z83_A Helicase/nucleoside tri 99.2 1.8E-11 6.1E-16 145.0 8.6 94 282-383 189-302 (459)
101 2whx_A Serine protease/ntpase/ 99.2 1.1E-10 3.6E-15 143.4 13.7 96 282-385 354-469 (618)
102 3lqh_A Histone-lysine N-methyl 99.1 1.1E-10 3.9E-15 122.0 11.3 103 874-994 72-174 (183)
103 2xau_A PRE-mRNA-splicing facto 99.1 5.1E-10 1.8E-14 140.7 16.2 108 282-393 302-441 (773)
104 3o8b_A HCV NS3 protease/helica 99.1 2.3E-10 7.9E-15 140.7 11.0 97 282-393 395-512 (666)
105 1c4o_A DNA nucleotide excision 99.1 5.6E-10 1.9E-14 138.2 13.7 113 266-381 422-539 (664)
106 2d7d_A Uvrabc system protein B 99.0 1.2E-09 4.1E-14 135.1 14.3 112 266-380 428-544 (661)
107 4f92_B U5 small nuclear ribonu 98.9 2E-08 6.9E-13 135.4 23.2 82 309-393 1215-1306(1724)
108 1tf5_A Preprotein translocase 98.9 3.5E-09 1.2E-13 132.1 11.4 129 265-400 414-550 (844)
109 3jux_A Protein translocase sub 98.8 8.7E-09 3E-13 126.3 12.8 129 265-400 456-592 (822)
110 3rc3_A ATP-dependent RNA helic 98.8 1.2E-08 4.1E-13 126.3 12.1 106 285-392 322-442 (677)
111 4f92_B U5 small nuclear ribonu 98.8 4.9E-08 1.7E-12 131.7 17.8 81 309-392 380-470 (1724)
112 2fsf_A Preprotein translocase 98.8 1.8E-08 6.3E-13 125.4 11.7 129 265-400 423-588 (853)
113 1nkt_A Preprotein translocase 98.7 4.2E-08 1.4E-12 122.5 12.3 129 265-400 442-622 (922)
114 1rif_A DAR protein, DNA helica 98.7 1.1E-08 3.7E-13 112.9 5.4 105 2-116 171-278 (282)
115 2fz4_A DNA repair protein RAD2 98.4 3.1E-07 1.1E-11 99.3 7.6 85 2-103 147-232 (237)
116 2gxq_A Heat resistant RNA depe 98.1 4.5E-06 1.5E-10 86.6 8.2 96 2-100 86-186 (207)
117 1t6n_A Probable ATP-dependent 98.0 9E-06 3.1E-10 85.6 7.7 99 2-102 96-203 (220)
118 3b6e_A Interferon-induced heli 97.9 7.4E-06 2.5E-10 85.2 5.5 71 2-75 96-176 (216)
119 2oxc_A Probable ATP-dependent 97.9 3E-05 1E-09 82.6 10.0 94 2-99 106-208 (230)
120 1vec_A ATP-dependent RNA helic 97.9 3.9E-05 1.3E-09 79.6 10.4 96 2-100 85-188 (206)
121 2pl3_A Probable ATP-dependent 97.9 2.8E-05 9.6E-10 82.8 9.0 95 2-100 111-213 (236)
122 1q0u_A Bstdead; DEAD protein, 97.9 1.8E-05 6.1E-10 83.5 7.2 101 2-106 86-197 (219)
123 2ipc_A Preprotein translocase 97.8 0.00022 7.4E-09 89.6 17.2 130 265-401 425-704 (997)
124 1qde_A EIF4A, translation init 97.7 5.7E-05 1.9E-09 79.5 8.0 95 2-100 96-197 (224)
125 3bor_A Human initiation factor 97.7 7E-05 2.4E-09 80.2 8.8 97 2-100 112-215 (237)
126 3ber_A Probable ATP-dependent 97.7 6.8E-05 2.3E-09 81.3 8.3 96 2-100 125-228 (249)
127 1wrb_A DJVLGB; RNA helicase, D 97.7 6.9E-05 2.4E-09 80.7 8.1 96 2-100 114-220 (253)
128 3dkp_A Probable ATP-dependent 97.5 0.00014 4.8E-09 77.8 8.6 96 2-99 112-220 (245)
129 3iuy_A Probable ATP-dependent 97.5 0.00016 5.5E-09 76.5 8.3 95 2-99 108-208 (228)
130 3ly5_A ATP-dependent RNA helic 97.2 0.00053 1.8E-08 74.8 8.6 96 2-100 140-243 (262)
131 3fe2_A Probable ATP-dependent 97.2 0.00082 2.8E-08 72.0 9.8 95 2-99 116-217 (242)
132 2dat_A Possible global transcr 96.5 0.00028 9.7E-09 69.1 -1.0 54 667-721 32-86 (123)
133 3fmo_B ATP-dependent RNA helic 96.3 0.0029 1E-07 70.5 5.1 103 2-114 176-288 (300)
134 2vl7_A XPD; helicase, unknown 95.8 0.014 4.8E-07 70.4 8.6 109 270-386 370-514 (540)
135 3mqm_A Probable histone-lysine 95.7 0.00093 3.2E-08 65.6 -1.9 55 666-721 27-82 (126)
136 3ljw_A Protein polybromo-1; al 95.6 0.00095 3.3E-08 65.1 -2.4 54 666-720 26-80 (120)
137 3k2j_A Protein polybromo-1; PB 95.6 0.0011 3.8E-08 65.6 -2.0 55 665-720 34-89 (130)
138 3mb4_A Protein polybromo-1; PB 95.4 0.0011 3.6E-08 65.1 -2.6 55 666-721 33-88 (124)
139 3iu5_A Protein polybromo-1; PB 95.3 0.0015 5.1E-08 63.3 -2.2 54 666-720 23-77 (116)
140 2grc_A Probable global transcr 95.0 0.002 6.7E-08 63.7 -2.4 55 665-720 29-84 (129)
141 3tlp_A Protein polybromo-1; PB 95.0 0.0023 7.8E-08 64.7 -2.0 56 665-721 42-98 (150)
142 4alg_A Bromodomain-containing 94.7 0.0038 1.3E-07 63.5 -1.2 77 669-746 47-152 (154)
143 3llm_A ATP-dependent RNA helic 94.6 0.034 1.2E-06 59.3 6.0 61 38-100 154-219 (235)
144 3d7c_A General control of amin 93.2 0.0098 3.4E-07 57.1 -1.5 50 670-720 23-73 (112)
145 3g0l_A Hwalp4, bromodomain adj 93.1 0.01 3.6E-07 57.3 -1.5 50 670-720 29-79 (117)
146 3dai_A ATPase family AAA domai 93.0 0.011 3.8E-07 58.4 -1.4 51 670-721 26-77 (130)
147 1e6i_A Transcriptional activat 92.9 0.012 3.9E-07 57.5 -1.6 52 669-721 28-80 (121)
148 3nxb_A CAT eye syndrome critic 92.8 0.012 4.1E-07 56.8 -1.6 49 671-720 33-82 (116)
149 2d9e_A Peregrin; four-helix bu 92.7 0.012 4E-07 57.5 -1.7 50 671-721 24-74 (121)
150 4a15_A XPD helicase, ATP-depen 92.3 0.29 9.7E-06 60.2 9.3 118 270-398 434-585 (620)
151 3uv4_A Second bromodomain of h 92.3 0.016 5.5E-07 59.2 -1.5 51 669-720 45-96 (158)
152 2i7k_A Bromodomain-containing 92.0 0.017 6E-07 56.0 -1.4 50 671-721 25-75 (117)
153 3q2e_A Bromodomain and WD repe 92.0 0.018 6.2E-07 56.2 -1.4 49 671-720 27-76 (123)
154 3hme_A Bromodomain-containing 91.9 0.017 5.7E-07 56.6 -1.8 49 671-720 30-79 (123)
155 3mb3_A PH-interacting protein; 91.8 0.018 6E-07 57.2 -1.7 49 671-720 38-87 (135)
156 3rcw_A Bromodomain-containing 91.4 0.022 7.6E-07 56.4 -1.6 52 669-721 28-80 (135)
157 3jvl_A Bromodomain-containing 91.0 0.016 5.3E-07 56.4 -3.1 52 668-720 26-80 (120)
158 3iu6_A Protein polybromo-1; PB 90.6 0.026 8.9E-07 56.9 -1.9 78 653-745 17-105 (147)
159 2ouo_A HUNK1 protein, bromodom 90.5 0.025 8.4E-07 55.9 -2.1 50 670-720 41-93 (130)
160 2ri7_A Nucleosome-remodeling f 90.3 0.023 7.8E-07 58.5 -2.8 51 669-720 87-138 (174)
161 3p1f_A CREB-binding protein; s 90.3 0.027 9.1E-07 54.6 -2.1 50 670-720 28-80 (119)
162 2oss_A HUNK1 protein, bromodom 89.9 0.037 1.3E-06 54.4 -1.5 52 669-721 36-90 (127)
163 3fkm_X Signaling protein; brom 88.0 0.052 1.8E-06 55.8 -2.0 50 670-720 37-89 (166)
164 2yyn_A Transcription intermedi 82.9 0.13 4.5E-06 51.0 -1.9 51 669-721 35-88 (135)
165 1gm5_A RECG; helicase, replica 82.9 4.3 0.00015 51.2 11.2 99 264-364 398-500 (780)
166 3crv_A XPD/RAD3 related DNA he 81.8 7.1 0.00024 46.9 12.3 87 269-365 378-473 (551)
167 3u5n_A E3 ubiquitin-protein li 80.5 0.22 7.7E-06 52.7 -1.3 49 670-720 97-149 (207)
168 2dkw_A Hypothetical protein KI 80.2 0.18 6E-06 49.9 -2.1 46 671-721 29-74 (131)
169 2vl7_A XPD; helicase, unknown 79.9 0.78 2.7E-05 55.2 3.0 35 39-73 144-187 (540)
170 3crv_A XPD/RAD3 related DNA he 78.7 1.2 4.1E-05 53.6 4.1 38 38-75 147-187 (551)
171 3oiy_A Reverse gyrase helicase 78.0 7.3 0.00025 44.3 10.2 95 264-360 45-145 (414)
172 3o36_A Transcription intermedi 76.5 0.25 8.5E-06 51.3 -2.4 49 670-720 97-148 (184)
173 4a15_A XPD helicase, ATP-depen 73.9 1.2 4.1E-05 54.6 2.3 37 38-74 174-217 (620)
174 2eyq_A TRCF, transcription-rep 67.4 20 0.00069 47.1 11.7 95 264-360 633-731 (1151)
175 4ddu_A Reverse gyrase; topoiso 62.9 18 0.00061 47.4 9.9 95 264-360 102-202 (1104)
176 3rc3_A ATP-dependent RNA helic 62.8 4.8 0.00017 49.9 4.4 83 3-98 194-280 (677)
177 2orw_A Thymidine kinase; TMTK, 59.4 5.6 0.00019 40.9 3.5 35 61-98 76-111 (184)
178 3e1s_A Exodeoxyribonuclease V, 57.5 35 0.0012 41.4 10.5 99 2-102 191-318 (574)
179 1nkt_A Preprotein translocase 56.1 16 0.00055 46.5 7.4 66 2-73 169-243 (922)
180 1wp9_A ATP-dependent RNA helic 54.6 57 0.002 36.6 11.2 89 265-360 33-131 (494)
181 1t6n_A Probable ATP-dependent 53.0 98 0.0034 31.4 11.8 92 264-360 60-164 (220)
182 3u61_B DNA polymerase accessor 51.7 23 0.00079 38.8 7.1 41 61-101 105-147 (324)
183 1tf5_A Preprotein translocase 51.6 9.8 0.00033 48.2 4.4 81 2-99 141-230 (844)
184 3fe2_A Probable ATP-dependent 49.9 1.1E+02 0.0039 31.7 11.9 91 264-360 75-182 (242)
185 3ber_A Probable ATP-dependent 49.8 1.2E+02 0.004 32.1 12.1 91 264-360 89-192 (249)
186 2fsf_A Preprotein translocase 49.4 12 0.00039 47.6 4.6 67 2-74 132-207 (853)
187 2oxc_A Probable ATP-dependent 48.8 78 0.0027 32.7 10.3 90 264-360 70-172 (230)
188 3vkw_A Replicase large subunit 45.5 51 0.0017 38.8 9.0 58 42-102 215-272 (446)
189 1gku_B Reverse gyrase, TOP-RG; 44.3 58 0.002 42.4 10.1 93 264-360 80-181 (1054)
190 2pl3_A Probable ATP-dependent 43.2 1.3E+02 0.0045 30.9 11.1 90 264-360 71-177 (236)
191 1xti_A Probable ATP-dependent 42.2 1.4E+02 0.0048 32.8 11.8 92 264-360 54-158 (391)
192 3iuy_A Probable ATP-dependent 40.8 85 0.0029 32.2 9.1 91 264-360 66-173 (228)
193 3ly5_A ATP-dependent RNA helic 40.7 1.9E+02 0.0067 30.5 12.1 91 264-360 100-207 (262)
194 2ro1_A Transcription intermedi 38.6 2 6.9E-05 44.9 -3.9 47 670-721 92-144 (189)
195 3nhm_A Response regulator; pro 37.7 1E+02 0.0036 27.9 8.3 100 275-380 19-122 (133)
196 2gxq_A Heat resistant RNA depe 35.0 1.9E+02 0.0064 28.8 10.4 91 264-360 47-150 (207)
197 3i42_A Response regulator rece 34.0 60 0.002 29.5 5.9 97 282-382 26-124 (127)
198 2j48_A Two-component sensor ki 33.9 96 0.0033 27.0 7.1 93 281-379 23-117 (119)
199 3a10_A Response regulator; pho 33.7 1.4E+02 0.0048 26.3 8.3 90 282-378 24-115 (116)
200 3tbk_A RIG-I helicase domain; 33.5 59 0.002 37.8 7.1 91 264-360 28-133 (555)
201 4a2p_A RIG-I, retinoic acid in 33.5 75 0.0026 37.0 8.0 91 264-360 31-136 (556)
202 3g5j_A Putative ATP/GTP bindin 32.3 56 0.0019 30.6 5.5 50 268-318 74-125 (134)
203 2v1x_A ATP-dependent DNA helic 31.6 1.1E+02 0.0039 36.9 9.3 79 265-346 69-147 (591)
204 3bos_A Putative DNA replicatio 31.5 1.5E+02 0.0053 29.8 9.2 86 14-99 51-147 (242)
205 2gk6_A Regulator of nonsense t 31.3 36 0.0012 41.5 4.9 57 39-101 319-375 (624)
206 1qde_A EIF4A, translation init 31.0 1.1E+02 0.0036 31.2 7.8 90 264-360 60-161 (224)
207 4a2q_A RIG-I, retinoic acid in 30.6 1E+02 0.0035 38.5 8.9 91 264-360 272-377 (797)
208 2b8t_A Thymidine kinase; deoxy 29.9 77 0.0026 33.6 6.6 36 60-98 88-124 (223)
209 2o0j_A Terminase, DNA packagin 28.7 70 0.0024 36.9 6.4 56 55-113 267-325 (385)
210 3eqz_A Response regulator; str 28.4 1E+02 0.0035 27.9 6.5 96 283-383 27-128 (135)
211 2r2a_A Uncharacterized protein 27.8 25 0.00084 36.7 2.2 38 62-99 88-132 (199)
212 1wrb_A DJVLGB; RNA helicase, D 27.1 3.4E+02 0.012 28.1 11.1 72 283-360 100-180 (253)
213 3n53_A Response regulator rece 26.6 3E+02 0.01 25.1 9.5 100 276-379 19-121 (140)
214 3cg4_A Response regulator rece 26.3 2.6E+02 0.009 25.4 9.1 95 282-380 30-127 (142)
215 1oyw_A RECQ helicase, ATP-depe 25.3 1.8E+02 0.006 34.5 9.3 77 265-346 50-126 (523)
216 3grc_A Sensor protein, kinase; 25.2 1.8E+02 0.0063 26.5 7.7 95 282-380 29-127 (140)
217 1xx6_A Thymidine kinase; NESG, 25.0 82 0.0028 32.5 5.6 51 61-114 81-138 (191)
218 3b6e_A Interferon-induced heli 24.9 90 0.0031 31.2 5.9 54 266-319 59-122 (216)
219 2db3_A ATP-dependent RNA helic 24.4 2.5E+02 0.0085 32.1 10.1 91 264-360 102-209 (434)
220 2l82_A Designed protein OR32; 23.8 1.8E+02 0.0061 27.6 7.0 47 285-331 4-50 (162)
221 1vec_A ATP-dependent RNA helic 23.7 4.2E+02 0.014 26.2 10.6 77 264-346 49-133 (206)
222 1s2m_A Putative ATP-dependent 23.6 3.5E+02 0.012 29.8 10.9 91 264-360 67-169 (400)
223 2xzl_A ATP-dependent helicase 23.3 62 0.0021 40.8 5.0 56 39-101 498-553 (802)
224 2wjy_A Regulator of nonsense t 23.2 54 0.0019 41.4 4.5 56 40-101 496-551 (800)
225 1hv8_A Putative ATP-dependent 23.1 4.3E+02 0.015 28.4 11.3 90 264-360 53-153 (367)
226 3cpe_A Terminase, DNA packagin 23.0 75 0.0026 38.4 5.5 54 55-111 267-323 (592)
227 3ipz_A Monothiol glutaredoxin- 22.5 2.1E+02 0.0073 26.3 7.4 67 273-342 8-80 (109)
228 2orv_A Thymidine kinase; TP4A 22.5 65 0.0022 34.8 4.3 34 61-98 90-124 (234)
229 3gk5_A Uncharacterized rhodane 22.3 61 0.0021 29.8 3.6 38 281-318 53-90 (108)
230 2b4a_A BH3024; flavodoxin-like 22.1 2.3E+02 0.008 25.8 7.8 90 282-379 38-130 (138)
231 2i4i_A ATP-dependent RNA helic 21.5 4.2E+02 0.014 29.2 11.1 71 284-360 102-181 (417)
232 1fuu_A Yeast initiation factor 21.3 2.9E+02 0.0098 30.2 9.6 89 265-360 68-168 (394)
233 2chg_A Replication factor C sm 21.0 53 0.0018 32.6 3.1 41 60-100 101-142 (226)
234 1q0u_A Bstdead; DEAD protein, 20.6 2.4E+02 0.0083 28.5 8.2 90 265-360 51-156 (219)
235 1u6t_A SH3 domain-binding glut 20.6 1E+02 0.0035 29.8 4.9 35 296-330 19-53 (121)
236 2j9r_A Thymidine kinase; TK1, 20.4 82 0.0028 33.4 4.5 35 61-98 101-136 (214)
237 3dmn_A Putative DNA helicase; 20.3 4.2E+02 0.014 26.3 9.7 77 271-365 49-125 (174)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-60 Score=593.97 Aligned_cols=394 Identities=39% Similarity=0.641 Sum_probs=325.2
Q ss_pred ChhHHHHHHHHcCCCcEEEEEcChhHHhHHHhhH---------hhhCCCCEEEEcHHHHHhchhhhccCCccEEEEcCCc
Q 001037 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQE---------VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQ 71 (1179)
Q Consensus 1 LsQW~~Ef~Kw~P~l~Vvvy~G~~~~R~~l~~~~---------~~~~~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAH 71 (1179)
|.||..||.+|+|.+.+++|.|....+..+.... .....++|+||||+++.++...|..+.|++|||||||
T Consensus 298 l~qW~~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH 377 (800)
T 3mwy_W 298 MPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAH 377 (800)
T ss_dssp HHHHHHHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGG
T ss_pred HHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhh
Confidence 4799999999999999999999988776543322 2345789999999999999999999999999999999
Q ss_pred cCCChhhHHHHHHHhhcCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCCCCchhHHHHH
Q 001037 72 RMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEK 151 (1179)
Q Consensus 72 riKN~~Sk~tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~ee 151 (1179)
++||..+++++++..+++.+||+|||||++|++.|||+||+||.|+.|.....|.-.. . ...
T Consensus 378 ~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~------~------------~~~ 439 (800)
T 3mwy_W 378 RLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFEN------Q------------DEE 439 (800)
T ss_dssp GGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------C------C------------TTH
T ss_pred hhcCchhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccc------c------------chh
Confidence 9999999999999999999999999999999999999999999999997655443110 0 011
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHH
Q 001037 152 KVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYK 231 (1179)
Q Consensus 152 ~~~ii~rL~kvL~pf~LRRtKkDV~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~ 231 (1179)
....+..|+.++.||++||++.+|...||++.+.++.|+|++.|+.+|..+.......+.... .....
T Consensus 440 ~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~------------~~~~~ 507 (800)
T 3mwy_W 440 QEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGA------------KGGHF 507 (800)
T ss_dssp HHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------------------C
T ss_pred HHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcc------------ccchh
Confidence 223467899999999999999999999999999999999999999999998776443322111 01123
Q ss_pred HHHHHHHHHHHHcCCCCCCCCccccc-------------chhhhhcccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHH
Q 001037 232 TLNNRCMELRKTCNHPLLNYPYFSDL-------------SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDI 298 (1179)
Q Consensus 232 sL~~~l~~LRkicnhP~L~~~~l~~l-------------~~~~lv~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldi 298 (1179)
.+++.++.||++|+||+++....... ....++..++|+.+|..+|..+...|+||||||+|+.++++
T Consensus 508 ~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~ 587 (800)
T 3mwy_W 508 SLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDI 587 (800)
T ss_dssp THHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHH
T ss_pred hHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHH
Confidence 57788999999999999865432111 11234567999999999999999999999999999999999
Q ss_pred HHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhccc
Q 001037 299 LEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAH 378 (1179)
Q Consensus 299 Le~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIh 378 (1179)
|+.+|...|+.+++|+|+++..+|.++++.|+++++.++|||+||++||+||||+.|++||+||++|||..++||+||+|
T Consensus 588 L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~ 667 (800)
T 3mwy_W 588 LGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAH 667 (800)
T ss_dssp HHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTS
T ss_pred HHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHH
Confidence 99999999999999999999999999999999888888899999999999999999999999999999999999999999
Q ss_pred ccCCcceEEEEEEEeehhhhhhhhhhhhhccCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 001037 379 RIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQR 457 (1179)
Q Consensus 379 RIGQkkeV~VyrLvaVEE~I~~~q~ek~~~~~~tv~~~~~l~Gk~~~~gSIEE~Il~~Lq~~K~dla~~Vi~ag~Fd~~ 457 (1179)
|+||+++|+||+|++ .+|+|+.|++ ++..|..++..+++.|.++..
T Consensus 668 RiGQ~k~V~Vyrlv~--------------------------------~~TiEe~i~~-~~~~K~~l~~~vi~~~~~~~~ 713 (800)
T 3mwy_W 668 RIGQKNHVMVYRLVS--------------------------------KDTVEEEVLE-RARKKMILEYAIISLGVTDGN 713 (800)
T ss_dssp CSSCCSCEEEEEEEE--------------------------------TTSHHHHHHH-HHHHHTTSCC-----------
T ss_pred hcCCCceEEEEEEec--------------------------------CCCHHHHHHH-HHHHHHHHHHHHHccCccccc
Confidence 999999999999987 5899999998 457899999999988776643
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5e-57 Score=555.58 Aligned_cols=405 Identities=29% Similarity=0.476 Sum_probs=332.3
Q ss_pred ChhHHHHHHHHcCC-CcEEEEEc-ChhHHhHHHhhHhh----hCCCCEEEEcHHHHHhchhhhccCCccEEEEcCCccCC
Q 001037 1 MSMWQSELHKWLPS-VSCIYYVG-AKDQRSRLFSQEVA----ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK 74 (1179)
Q Consensus 1 LsQW~~Ef~Kw~P~-l~Vvvy~G-~~~~R~~l~~~~~~----~~~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriK 74 (1179)
|.||.+||.+|+|. +.++.+.+ ....+......... ...++|+||||+++..+...|....|++|||||||++|
T Consensus 126 l~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ik 205 (644)
T 1z3i_X 126 VRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLK 205 (644)
T ss_dssp HHHHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCC
T ss_pred HHHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecC
Confidence 46999999999975 55555554 44443332222111 12589999999999999888999999999999999999
Q ss_pred ChhhHHHHHHHhhcCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCCCCchhHHHHHHHH
Q 001037 75 DRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVI 154 (1179)
Q Consensus 75 N~~Sk~tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~ee~~~ 154 (1179)
|..++.++++..+.+.+||+|||||++|++.|||+|++||.|++|++...|..+|..|+..+........ .......
T Consensus 206 n~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~---~~~~~~~ 282 (644)
T 1z3i_X 206 NSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDK---DRAAGEQ 282 (644)
T ss_dssp TTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSH---HHHHHHH
T ss_pred ChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHH---HHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988765433222221 2223334
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHHH
Q 001037 155 IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLN 234 (1179)
Q Consensus 155 ii~rL~kvL~pf~LRRtKkDV~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL~ 234 (1179)
.+.+|+.++.||++||++.++...||++.+.++.|+|++.|+.+|+.+.......... .... .....+
T Consensus 283 ~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~-------~~g~-----~~~~~l 350 (644)
T 1z3i_X 283 KLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESL-------QTGK-----ISVSSL 350 (644)
T ss_dssp HHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSS-------CTTC-----CCHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHH-------hcCc-----cchhHH
Confidence 5778999999999999999999999999999999999999999999887654321100 0000 113455
Q ss_pred HHHHHHHHHcCCCCCCCCcc-------cc----c-----chhhhhcccCHHHHHHHHHHHHhh-cCCeEEEeehhHHHHH
Q 001037 235 NRCMELRKTCNHPLLNYPYF-------SD----L-----SKDFLVKSCGKLWILDRILIKLQR-TGHRVLLFSTMTKLLD 297 (1179)
Q Consensus 235 ~~l~~LRkicnhP~L~~~~l-------~~----l-----~~~~lv~~SgKl~~L~~IL~el~~-~g~KVLIFSqft~~ld 297 (1179)
..++.||++|+||.+..... .. . ........++|+.+|..++..+.. .++|+||||+++.+++
T Consensus 351 ~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~ 430 (644)
T 1z3i_X 351 SSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLD 430 (644)
T ss_dssp HHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHH
Confidence 67889999999998753211 00 0 011123458999999999998864 5899999999999999
Q ss_pred HHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcc
Q 001037 298 ILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA 377 (1179)
Q Consensus 298 iLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRI 377 (1179)
+|+.+|...|+.+++++|+++.++|++++++|++++...+|||+||++||+||||+.|++||+||++|||..+.||+||+
T Consensus 431 ~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~ 510 (644)
T 1z3i_X 431 LFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARV 510 (644)
T ss_dssp HHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTS
T ss_pred HHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhh
Confidence 99999999999999999999999999999999986666779999999999999999999999999999999999999999
Q ss_pred cccCCcceEEEEEEEeehhhhhhhhhhhhhccCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHhccc
Q 001037 378 HRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGR 453 (1179)
Q Consensus 378 hRIGQkkeV~VyrLvaVEE~I~~~q~ek~~~~~~tv~~~~~l~Gk~~~~gSIEE~Il~~Lq~~K~dla~~Vi~ag~ 453 (1179)
||+||+++|+||+|++ .+|||+.|++ ++..|..+++.+++.+.
T Consensus 511 ~R~Gq~~~v~v~~lv~--------------------------------~~tiEe~i~~-~~~~K~~l~~~v~~~~~ 553 (644)
T 1z3i_X 511 WRDGQKKTCYIYRLLS--------------------------------TGTIEEKILQ-RQAHKKALSSCVVDEEQ 553 (644)
T ss_dssp SSTTCCSCEEEEEEEE--------------------------------TTSHHHHHHH-HHHHHHHTSCCCCSCSS
T ss_pred hhcCCCCceEEEEEEE--------------------------------CCCHHHHHHH-HHHHHHHHHHHHhcCcc
Confidence 9999999999999987 5899999998 56788888887776643
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1e-52 Score=499.48 Aligned_cols=377 Identities=27% Similarity=0.497 Sum_probs=317.6
Q ss_pred ChhHHHHHHHHcCCCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchhhhccCCccEEEEcCCccCCChhhHH
Q 001037 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVL 80 (1179)
Q Consensus 1 LsQW~~Ef~Kw~P~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriKN~~Sk~ 80 (1179)
+.||.+||.+|+|.+++.++.|.... .....++|+||||+++.++.. +....|++|||||||+++|..+++
T Consensus 98 ~~qw~~e~~~~~~~~~v~~~~g~~~~--------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~ 168 (500)
T 1z63_A 98 LKNWEEELSKFAPHLRFAVFHEDRSK--------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKI 168 (500)
T ss_dssp HHHHHHHHHHHCTTSCEEECSSSTTS--------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHH
T ss_pred HHHHHHHHHHHCCCceEEEEecCchh--------ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhHHH
Confidence 36999999999999999999887521 123468999999999998765 777899999999999999999999
Q ss_pred HHHHHhhcCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCCCCchhHHHHHHHHHHHHHH
Q 001037 81 ARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 160 (1179)
Q Consensus 81 tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~ee~~~ii~rL~ 160 (1179)
++++..+.+.++|+|||||++|++.|||++++||.|+.|++...|..+|..++.... .....+|+
T Consensus 169 ~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~---------------~~~~~~l~ 233 (500)
T 1z63_A 169 FKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD---------------NMAKEELK 233 (500)
T ss_dssp HHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC---------------HHHHHHHH
T ss_pred HHHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhcccccccc---------------HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887765421 11345688
Q ss_pred Hhhhhhhhhhhhhh--hhcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHHHHHHH
Q 001037 161 QILEPFMLRRRVED--VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 238 (1179)
Q Consensus 161 kvL~pf~LRRtKkD--V~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL~~~l~ 238 (1179)
.++.++++||++.+ +...||++.+..+.|+|++.|+.+|+.+.......+.... .......+...++
T Consensus 234 ~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~ 302 (500)
T 1z63_A 234 AIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVT-----------GIKRKGMILSTLL 302 (500)
T ss_dssp HHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCC-----------THHHHHHHHHHHH
T ss_pred HHHhhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhh-----------cccchHHHHHHHH
Confidence 99999999999976 6778999999999999999999999988765332221100 1112345677889
Q ss_pred HHHHHcCCCCCCCCcccccchhhhhcccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHc-CCeEEEEcCCC
Q 001037 239 ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTT 317 (1179)
Q Consensus 239 ~LRkicnhP~L~~~~l~~l~~~~lv~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~-Gi~~~rIdGst 317 (1179)
.|+++|+||.+.... ......++|+..|.++|.++...++|+||||+++.+++.|..+|... |+.+..++|++
T Consensus 303 ~lr~~~~~p~l~~~~------~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~ 376 (500)
T 1z63_A 303 KLKQIVDHPALLKGG------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGEL 376 (500)
T ss_dssp HHHHHTTCTHHHHCS------CCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTS
T ss_pred HHHHHhCCHHHhcCc------cchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCC
Confidence 999999999764321 22345688999999999999999999999999999999999999986 99999999999
Q ss_pred CHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeehhh
Q 001037 318 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDK 397 (1179)
Q Consensus 318 s~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~ 397 (1179)
+..+|.++++.|++ +..++|||++|+++++||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++
T Consensus 377 ~~~~R~~~~~~F~~-~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~---- 451 (500)
T 1z63_A 377 SKKERDDIISKFQN-NPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS---- 451 (500)
T ss_dssp CHHHHHHHHHHHHH-CTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEE----
T ss_pred CHHHHHHHHHHhcC-CCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEe----
Confidence 99999999999997 4456789999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhhhhhhhccCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHhcc
Q 001037 398 ISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 452 (1179)
Q Consensus 398 I~~~q~ek~~~~~~tv~~~~~l~Gk~~~~gSIEE~Il~~Lq~~K~dla~~Vi~ag 452 (1179)
.+|+|+.|++ ++..|..+++.+++.+
T Consensus 452 ----------------------------~~tiee~i~~-~~~~K~~l~~~~~~~~ 477 (500)
T 1z63_A 452 ----------------------------VGTLEEKIDQ-LLAFKRSLFKDIISSG 477 (500)
T ss_dssp ----------------------------TTSHHHHTHH-HHTTCSSSSSSGGGST
T ss_pred ----------------------------CCCHHHHHHH-HHHHHHHHHHHHhhcC
Confidence 4788888887 4566777777766654
No 4
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=1.3e-37 Score=345.34 Aligned_cols=237 Identities=24% Similarity=0.361 Sum_probs=176.1
Q ss_pred hhhhhhhhhhhhcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHHHHHHHHHHHHc
Q 001037 165 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 244 (1179)
Q Consensus 165 pf~LRRtKkDV~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL~~~l~~LRkic 244 (1179)
.--+||+|++|..+||++.+.+++|+||+.|+.+|+.+.......+.. .. .......+++.+++||++|
T Consensus 11 ~~~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~---------~~--~~~~~~~~l~~l~~Lrq~~ 79 (271)
T 1z5z_A 11 SSGLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDS---------VT--GIKRKGMILSTLLKLKQIV 79 (271)
T ss_dssp -----------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTT---------CC--HHHHHHHHHHHHHHHHHHT
T ss_pred cccccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHh---------cc--ccchHHHHHHHHHHHHHHc
Confidence 345899999999999999999999999999999999887653211110 00 0112345778899999999
Q ss_pred CCCCCCCCcccccchhhhhcccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHc-CCeEEEEcCCCCHHHHH
Q 001037 245 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRE 323 (1179)
Q Consensus 245 nhP~L~~~~l~~l~~~~lv~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~-Gi~~~rIdGsts~eeRe 323 (1179)
+||.++... ......++|+..|.++|..+...++|+||||+++.+++.|+.+|... |+.+++++|+++..+|.
T Consensus 80 ~hP~l~~~~------~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~ 153 (271)
T 1z5z_A 80 DHPALLKGG------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERD 153 (271)
T ss_dssp TCTHHHHCS------CCCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHH
T ss_pred CCHHHhcCC------ccccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHH
Confidence 999875421 12456789999999999999889999999999999999999999985 99999999999999999
Q ss_pred HHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeehhhhhhhhh
Q 001037 324 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQK 403 (1179)
Q Consensus 324 ~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~I~~~q~ 403 (1179)
.+++.|++ +..++|||++|++||+||||+.|++||+||+||||..+.||+||+||+||+++|+||+|++
T Consensus 154 ~~i~~F~~-~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~---------- 222 (271)
T 1z5z_A 154 DIISKFQN-NPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS---------- 222 (271)
T ss_dssp HHHHHHHH-CTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEE----------
T ss_pred HHHHHhcC-CCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEee----------
Confidence 99999997 4467789999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhccCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHHhcc
Q 001037 404 EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 452 (1179)
Q Consensus 404 ek~~~~~~tv~~~~~l~Gk~~~~gSIEE~Il~~Lq~~K~dla~~Vi~ag 452 (1179)
.+||||.|++ ++..|..+++.+++.+
T Consensus 223 ----------------------~~TiEe~i~~-~~~~K~~l~~~~~~~~ 248 (271)
T 1z5z_A 223 ----------------------VGTLEEKIDQ-LLAFKRSLFKDIISSG 248 (271)
T ss_dssp ----------------------TTSHHHHHHH-HHHHCHHHHTTGGGGT
T ss_pred ----------------------CCCHHHHHHH-HHHHHHHHHHHHHccC
Confidence 5899999998 5688999999888765
No 5
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=1.2e-35 Score=380.26 Aligned_cols=373 Identities=16% Similarity=0.212 Sum_probs=269.1
Q ss_pred ChhHHHHHHHHcCCCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhch---hhhccCCccEEEEcCCccCCChh
Q 001037 1 MSMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKDRE 77 (1179)
Q Consensus 1 LsQW~~Ef~Kw~P~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~---~~L~ki~wdlVIIDEAHriKN~~ 77 (1179)
+.||..||.+|+ ++.+.+|.|...... .......+..++|+||||+++.++. ..+....|++|||||||+++|..
T Consensus 212 l~Qw~~E~~~~f-~l~v~v~~~~~~~~~-~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~ 289 (968)
T 3dmq_A 212 QHQWLVEMLRRF-NLRFALFDDERYAEA-QHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSE 289 (968)
T ss_dssp HHHHHHHHHHHS-CCCCEECCHHHHHHH-HHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBT
T ss_pred HHHHHHHHHHHh-CCCEEEEccchhhhh-hhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCC
Confidence 469999999999 677888877643322 1111234557899999999998763 44667799999999999999866
Q ss_pred h---HHHHHHHhh--cCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccc---------cCCCC----
Q 001037 78 S---VLARDLDRY--RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQ---------KEGPT---- 139 (1179)
Q Consensus 78 S---k~tkaL~~L--ka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~---------~~~~~---- 139 (1179)
+ ..++++..+ +++++|+|||||++|++.|+|++++||.|..|.+...|..++..... .....
T Consensus 290 ~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~ 369 (968)
T 3dmq_A 290 DAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDE 369 (968)
T ss_dssp TBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGG
T ss_pred CcchHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHH
Confidence 4 458888888 68889999999999999999999999999999999888876532110 00000
Q ss_pred -----C---------------CCCchhHHHHHHHHHHHHHHHh--hhhhhhhhhhhhhhcCCCCceEEEEEecCCHHHHH
Q 001037 140 -----H---------------NADDDWLETEKKVIIIHRLHQI--LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSA 197 (1179)
Q Consensus 140 -----~---------------~~e~~~l~~ee~~~ii~rL~kv--L~pf~LRRtKkDV~~~LP~k~e~vV~~~LS~~Qr~ 197 (1179)
. ..... ........+..+... ...+++|+++..+. .+|.+....+.+++++.++.
T Consensus 370 ~~~L~~~l~~~~~~~l~~~~~~~~~~--~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~-~~p~r~~~~~~l~~~~~~~~ 446 (968)
T 3dmq_A 370 LNMLGEMIGEQDIEPLLQAANSDSED--AQSARQELVSMLMDRHGTSRVLFRNTRNGVK-GFPKRELHTIKLPLPTQYQT 446 (968)
T ss_dssp TTSSTTTTCTTCSSTTGGGTCCCSSC--STTTHHHHHHHHGGGCTTTTTEECCCTTTCC-CCCCCCCCEEEECCCHHHHH
T ss_pred HHHHHHHhcchhhHHHHhcccchhhh--hHHHHHHHHHHHHHhhCcchhhhhhhhhhhc-ccChhheEeeecCCCHHHHH
Confidence 0 00000 000001111111111 13466777776664 79999999999999999999
Q ss_pred HHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccchhhhhcccCHHHHHHHHHH
Q 001037 198 IYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILI 277 (1179)
Q Consensus 198 lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL~~~l~~LRkicnhP~L~~~~l~~l~~~~lv~~SgKl~~L~~IL~ 277 (1179)
+|+............... ..+.+|...+..+.. .....+..+.|+..|.++|.
T Consensus 447 ~~~~~~~~~~~~~~~~~~--------------------------~~~l~pe~~~~~l~~-~~~~~~~~~~K~~~L~~ll~ 499 (968)
T 3dmq_A 447 AIKVSGIMGARKSAEDRA--------------------------RDMLYPERIYQEFEG-DNATWWNFDPRVEWLMGYLT 499 (968)
T ss_dssp HHHHHHHTTCCSSGGGGT--------------------------HHHHCSGGGTTTTTS-SSCCTTTTSHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhHHHH--------------------------hhhcChHHHHHHhhh-hhhcccCccHHHHHHHHHHH
Confidence 998654432111110000 011122222221111 11123456789999999998
Q ss_pred HHhhcCCeEEEeehhHHHHHHHHHHHHH-cCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccc
Q 001037 278 KLQRTGHRVLLFSTMTKLLDILEEYLQW-RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSAD 356 (1179)
Q Consensus 278 el~~~g~KVLIFSqft~~ldiLe~~L~~-~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~Ad 356 (1179)
. ..+.|+||||+++.+++.|...|.. .|+.+..++|+++..+|..+++.|+++.+.+.| |++|+++++||||+.|+
T Consensus 500 ~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~v-LvaT~v~~~GlDl~~~~ 576 (968)
T 3dmq_A 500 S--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQV-LLCSEIGSEGRNFQFAS 576 (968)
T ss_dssp H--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEE-EECSCCTTCSSCCTTCC
T ss_pred h--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccE-EEecchhhcCCCcccCc
Confidence 7 5789999999999999999999995 599999999999999999999999975434665 66789999999999999
Q ss_pred eeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEe---ehhhhhhhhhhhhhc
Q 001037 357 TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA---VVDKISSHQKEDELR 408 (1179)
Q Consensus 357 tVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLva---VEE~I~~~q~ek~~~ 408 (1179)
+||+||+||||..+.|++||++|+||++.|.||++++ ++++|++.+.++...
T Consensus 577 ~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~ 631 (968)
T 3dmq_A 577 HMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDA 631 (968)
T ss_dssp EEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCC
T ss_pred EEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999876 555555555444433
No 6
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.1e-32 Score=311.07 Aligned_cols=367 Identities=17% Similarity=0.144 Sum_probs=224.4
Q ss_pred hhHHHHHHHHc--CCCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchh--hhccCCccEEEEcCCccCCChh
Q 001037 2 SMWQSELHKWL--PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE 77 (1179)
Q Consensus 2 sQW~~Ef~Kw~--P~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~--~L~ki~wdlVIIDEAHriKN~~ 77 (1179)
.||..||.+|+ |...+.++.|........ .....++|+|+||+.+.+... .+....|++|||||||++++..
T Consensus 66 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~----~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~ 141 (494)
T 1wp9_A 66 LQHAESFRRLFNLPPEKIVALTGEKSPEERS----KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNY 141 (494)
T ss_dssp HHHHHHHHHHBCSCGGGEEEECSCSCHHHHH----HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTC
T ss_pred HHHHHHHHHHhCcchhheEEeeCCcchhhhh----hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCC
Confidence 68999999998 566999999876443221 112357999999999987643 4556689999999999998643
Q ss_pred h--HHHHHHHh-hcCCcEEEEeccCCCCChHHHHHHHhhhcCCCC---CChHHHHHHhcCccccCCCCCCCCchhHHHHH
Q 001037 78 S--VLARDLDR-YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVF---DNRKAFHDWFSQPFQKEGPTHNADDDWLETEK 151 (1179)
Q Consensus 78 S--k~tkaL~~-Lka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if---~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~ee 151 (1179)
+ .....+.. ....++|+|||||. ++..+++.++.++....+ .....+...+..+...... ... ..
T Consensus 142 ~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~--- 212 (494)
T 1wp9_A 142 AYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWV----RVD-LP--- 212 (494)
T ss_dssp HHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEE----EEC-CC---
T ss_pred cHHHHHHHHHhcCCCCeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEE----ecC-Cc---
Confidence 2 22222222 25788999999999 778888888888765422 1111111111110000000 000 00
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhcCCCCceEEEEEecCCHHHH-----HHHHHHHHhccccCCchhHHHhhhcChhh-
Q 001037 152 KVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQS-----AIYDWIKATGTLRVDPEDEKRRVQKNPIY- 225 (1179)
Q Consensus 152 ~~~ii~rL~kvL~pf~LRRtKkDV~~~LP~k~e~vV~~~LS~~Qr-----~lYd~i~~~~~~~l~~~~~~~~l~~~~~~- 225 (1179)
.....+...+.+++.++.+......+..... ..++.... .++..+.......................
T Consensus 213 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (494)
T 1wp9_A 213 --EIYKEVRKLLREMLRDALKPLAETGLLESSS----PDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAI 286 (494)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCC----TTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhccccccC----CCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHH
Confidence 1234567778888888887776655443322 12232221 11111111000000000000000000000
Q ss_pred ---HHHHHHHHHHHHHHHHHHcCCCCCCC-------Ccccccch-----hhhhcccCHHHHHHHHHHHHh--hcCCeEEE
Q 001037 226 ---QAKVYKTLNNRCMELRKTCNHPLLNY-------PYFSDLSK-----DFLVKSCGKLWILDRILIKLQ--RTGHRVLL 288 (1179)
Q Consensus 226 ---~~~~~~sL~~~l~~LRkicnhP~L~~-------~~l~~l~~-----~~lv~~SgKl~~L~~IL~el~--~~g~KVLI 288 (1179)
.......+...+..+...+.++.... +.+..... ......++|+..|.++|..+. ..++|+||
T Consensus 287 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lV 366 (494)
T 1wp9_A 287 ELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIV 366 (494)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEE
Confidence 00000111222233333333311100 00000000 001145789999999999876 57899999
Q ss_pred eehhHHHHHHHHHHHHHcCCeEEEEcC--------CCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeee
Q 001037 289 FSTMTKLLDILEEYLQWRQLVYRRIDG--------TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 360 (1179)
Q Consensus 289 FSqft~~ldiLe~~L~~~Gi~~~rIdG--------sts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi 360 (1179)
||+++.+++.|.++|...|+.+..++| +++..+|.++++.|+++. +. +|++|.++++||||+.|++||+
T Consensus 367 F~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~--~~-vLv~T~~~~~Gldl~~~~~Vi~ 443 (494)
T 1wp9_A 367 FTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE--FN-VLVATSVGEEGLDVPEVDLVVF 443 (494)
T ss_dssp ECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS--CS-EEEECGGGGGGGGSTTCCEEEE
T ss_pred EEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCC--ce-EEEECCccccCCCchhCCEEEE
Confidence 999999999999999999999999999 899999999999999644 44 5788899999999999999999
Q ss_pred cCCCCCcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 361 YDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 361 ~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
||++|||..+.||+||++|.|| +.+|+|++
T Consensus 444 ~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~ 473 (494)
T 1wp9_A 444 YEPVPSAIRSIQRRGRTGRHMP---GRVIILMA 473 (494)
T ss_dssp SSCCHHHHHHHHHHTTSCSCCC---SEEEEEEE
T ss_pred eCCCCCHHHHHHHHhhccCCCC---ceEEEEEe
Confidence 9999999999999999999999 67777766
No 7
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.96 E-value=5.2e-29 Score=280.34 Aligned_cols=202 Identities=17% Similarity=0.206 Sum_probs=152.0
Q ss_pred CCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCccc---
Q 001037 179 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFS--- 255 (1179)
Q Consensus 179 LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL~~~l~~LRkicnhP~L~~~~l~--- 255 (1179)
-|++.++.+.|+||+.|+.+|+.+.......+ ................++.+.+++||++||||+++...+.
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I-----~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~ 94 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDI-----LRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKS 94 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHH-----HHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSC
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHH-----HHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCcc
Confidence 48999999999999999999999875322111 1111111111123356789999999999999999853221
Q ss_pred ---ccchhhhhcccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccC
Q 001037 256 ---DLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 332 (1179)
Q Consensus 256 ---~l~~~~lv~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ 332 (1179)
......++..|||+.+|.++|..+.+.|+|||||||++.++++|+++|..+++.|++++|++...+ .+. .
T Consensus 95 ~~~~~~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k~------~ 167 (328)
T 3hgt_A 95 LITRDVPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AAA------N 167 (328)
T ss_dssp SCSTTHHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--------------
T ss_pred ccccchhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hhc------c
Confidence 112445778999999999999999999999999999999999999999999999999999965432 221 2
Q ss_pred CCCccEEeeehhhhccCCC-----CcccceeeecCCCCCcchH-HHHhhccccc--CCcceEEEEEEEe
Q 001037 333 DSDCFIFLLSIRAAGRGLN-----LQSADTVIIYDPDPNPKNE-EQAVARAHRI--GQKREVKVIYMEA 393 (1179)
Q Consensus 333 ds~i~VLLlST~AGgeGLN-----LQ~AdtVIi~D~pWNP~~~-eQAiGRIhRI--GQkkeV~VyrLva 393 (1179)
+..++++|+ |.+||.|+| |..||+||+||++|||+.. .||+.|+||+ ||+++|.||+|++
T Consensus 168 ~~~~~i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt 235 (328)
T 3hgt_A 168 DFSCTVHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVA 235 (328)
T ss_dssp CCSEEEEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEE
T ss_pred cCCceEEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeC
Confidence 456788877 568888886 8999999999999999998 9999999999 7899999999998
No 8
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.95 E-value=3.1e-28 Score=287.20 Aligned_cols=302 Identities=15% Similarity=0.171 Sum_probs=209.9
Q ss_pred hhHHHHHHHHcCCCc-EEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchhhhccCCccEEEEcCCccCCChhhHH
Q 001037 2 SMWQSELHKWLPSVS-CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVL 80 (1179)
Q Consensus 2 sQW~~Ef~Kw~P~l~-Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriKN~~Sk~ 80 (1179)
.||.++|.+| ++. +.++.|... ...+|+|+||+.+......+. ..|++|||||||++.+....
T Consensus 147 ~Q~~~~~~~~--~~~~v~~~~g~~~------------~~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~~- 210 (472)
T 2fwr_A 147 EQWKERLGIF--GEEYVGEFSGRIK------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYV- 210 (472)
T ss_dssp HHHHHHGGGG--CGGGEEEBSSSCB------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTTH-
T ss_pred HHHHHHHHhC--CCcceEEECCCcC------------CcCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChHHH-
Confidence 6999999995 466 888887643 246899999999988766553 36999999999999876543
Q ss_pred HHHHHhhcCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCCCCchhHHHHHHHHHHHHHH
Q 001037 81 ARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 160 (1179)
Q Consensus 81 tkaL~~Lka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~ee~~~ii~rL~ 160 (1179)
..+..+.+.++|+|||||..++-.+ ..|.
T Consensus 211 -~~~~~~~~~~~l~lSATp~~~~~~~--------------------------------------------------~~l~ 239 (472)
T 2fwr_A 211 -QIAQMSIAPFRLGLTATFEREDGRH--------------------------------------------------EILK 239 (472)
T ss_dssp -HHHHTCCCSEEEEEESCCCCTTSGG--------------------------------------------------GSHH
T ss_pred -HHHHhcCCCeEEEEecCccCCCCHH--------------------------------------------------HHHH
Confidence 3555568889999999998654211 0133
Q ss_pred Hhhhhhhhhhhhhhhhc-CCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHHHHHHHH
Q 001037 161 QILEPFMLRRRVEDVEG-SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 239 (1179)
Q Consensus 161 kvL~pf~LRRtKkDV~~-~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL~~~l~~ 239 (1179)
..+.+.+.+....++.. .+++.....+.+++++.++..|+.+.......+...... ......+ ..+
T Consensus 240 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~-----~~~------ 306 (472)
T 2fwr_A 240 EVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGIT--LRRAEDF-----NKI------ 306 (472)
T ss_dssp HHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCT--TTCCSSS-----TTT------
T ss_pred HHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcc--ccchhhH-----HHH------
Confidence 44455555555555533 377777888999999999988875533221111100000 0000000 000
Q ss_pred HHHHcCCCCCCCCcc-cccchhhhhcccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCC
Q 001037 240 LRKTCNHPLLNYPYF-SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 318 (1179)
Q Consensus 240 LRkicnhP~L~~~~l-~~l~~~~lv~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts 318 (1179)
+...+..+....... ...........+.|+..|.++|.. ..++++||||+++..++.|...|. +..++|.++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~ 379 (472)
T 2fwr_A 307 VMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTS 379 (472)
T ss_dssp TTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSC
T ss_pred HHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCC
Confidence 000000000000000 000011123456799999999987 568999999999999999999884 557899999
Q ss_pred HHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCc-ceEEEEEEEe
Q 001037 319 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQK-REVKVIYMEA 393 (1179)
Q Consensus 319 ~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQk-keV~VyrLva 393 (1179)
..+|.++++.|+++ .+.| |++|+++++|||++.+++||+||++||+..+.|++||++|.||. +.|.||.|++
T Consensus 380 ~~~R~~~~~~F~~g--~~~v-Lv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~ 452 (472)
T 2fwr_A 380 REEREEILEGFRTG--RFRA-IVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELIS 452 (472)
T ss_dssp SHHHHTHHHHHHHS--SCSB-CBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEE
T ss_pred HHHHHHHHHHHhCC--CCCE-EEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEe
Confidence 99999999999963 4454 78889999999999999999999999999999999999999998 7899999987
No 9
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.94 E-value=6.9e-26 Score=270.10 Aligned_cols=123 Identities=21% Similarity=0.258 Sum_probs=67.5
Q ss_pred ccCHHHHHHHHHHHHh--hcCCeEEEeehhHHHHHHHHHHHHHc------------CCeEEEEcCCCCHHHHHHHHHHhc
Q 001037 265 SCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR------------QLVYRRIDGTTSLEDRESAIVDFN 330 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~--~~g~KVLIFSqft~~ldiLe~~L~~~------------Gi~~~rIdGsts~eeRe~iI~~Fn 330 (1179)
.++|+..|.++|.+.. ..++|+||||+++.+++.|.++|... |..+..++|+++.++|..+++.|+
T Consensus 370 ~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 449 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 449 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------
T ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhc
Confidence 4679999999998876 56899999999999999999999875 555666677899999999999999
Q ss_pred cCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 331 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 331 ~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
+ ++.+. +|++|+++++||||+.|++||+||+||||..+.||+|| +| .+++.+|.|++
T Consensus 450 ~-~g~~~-vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR---~~~g~~~~l~~ 506 (556)
T 4a2p_A 450 T-SKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTS 506 (556)
T ss_dssp -----CC-EEEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEES
T ss_pred c-cCceE-EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEEEe
Confidence 6 35555 47888999999999999999999999999999999999 44 56777888865
No 10
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.93 E-value=1.3e-25 Score=282.56 Aligned_cols=123 Identities=21% Similarity=0.258 Sum_probs=72.5
Q ss_pred ccCHHHHHHHHHHHHh--hcCCeEEEeehhHHHHHHHHHHHHHc------------CCeEEEEcCCCCHHHHHHHHHHhc
Q 001037 265 SCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR------------QLVYRRIDGTTSLEDRESAIVDFN 330 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~--~~g~KVLIFSqft~~ldiLe~~L~~~------------Gi~~~rIdGsts~eeRe~iI~~Fn 330 (1179)
.++|+..|..+|.... ..++|+||||+++.+++.|..+|... |..+..++|+++..+|..+++.|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~ 690 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------------
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhh
Confidence 4689999999998865 56799999999999999999999873 566777788899999999999999
Q ss_pred cCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 331 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 331 ~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
+ ++.+. ||++|+++++||||+.|++||+||+||||..+.||+|| +| .+++.+|.|++
T Consensus 691 ~-~g~~~-vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR---~~~g~~i~l~~ 747 (797)
T 4a2q_A 691 T-SKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTS 747 (797)
T ss_dssp ----CCS-EEEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEEC
T ss_pred c-cCCce-EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEEEe
Confidence 6 34555 57888999999999999999999999999999999999 55 57777888865
No 11
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.93 E-value=2.4e-25 Score=284.65 Aligned_cols=123 Identities=21% Similarity=0.270 Sum_probs=73.9
Q ss_pred ccCHHHHHHHHHHHHh--hcCCeEEEeehhHHHHHHHHHHHHHc------------CCeEEEEcCCCCHHHHHHHHHHhc
Q 001037 265 SCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR------------QLVYRRIDGTTSLEDRESAIVDFN 330 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~--~~g~KVLIFSqft~~ldiLe~~L~~~------------Gi~~~rIdGsts~eeRe~iI~~Fn 330 (1179)
.++|+..|.++|.+.. ..++|+||||+++.+++.|..+|... |..+..++|+++..+|.+++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 4679999999999875 46799999999999999999999986 555666678899999999999999
Q ss_pred cCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 331 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 331 ~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
+ ++.+. ||++|+++++||||+.|++||+||+||||..+.||+|| |+.+++.||.|++
T Consensus 691 ~-~g~~~-VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~ 747 (936)
T 4a2w_A 691 T-SKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTS 747 (936)
T ss_dssp ----CCS-EEEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEES
T ss_pred c-cCCee-EEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCCEEEEEEe
Confidence 6 34555 57899999999999999999999999999999999999 4556777788765
No 12
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.93 E-value=4.6e-25 Score=262.26 Aligned_cols=123 Identities=20% Similarity=0.286 Sum_probs=86.2
Q ss_pred ccCHHHHHHHHHHHHhhc--CCeEEEeehhHHHHHHHHHHHHHcC------------CeEEEEcCCCCHHHHHHHHHHhc
Q 001037 265 SCGKLWILDRILIKLQRT--GHRVLLFSTMTKLLDILEEYLQWRQ------------LVYRRIDGTTSLEDRESAIVDFN 330 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~--g~KVLIFSqft~~ldiLe~~L~~~G------------i~~~rIdGsts~eeRe~iI~~Fn 330 (1179)
.++|+..|.++|..+... +.++||||+++.+++.|..+|...+ ..+..++|+++.++|.++++.|+
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 468999999999988654 4999999999999999999999764 34455566999999999999999
Q ss_pred cCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 331 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 331 ~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
+ ++.+.| |++|+++++||||+.|++||+||+||||..+.||+|| |+.+.+.+|.|++
T Consensus 449 ~-~g~~~v-LvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~ 505 (555)
T 3tbk_A 449 A-SGDNNI-LIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTS 505 (555)
T ss_dssp ----CCSE-EEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEES
T ss_pred c-CCCeeE-EEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEc
Confidence 5 355565 7789999999999999999999999999999999999 5667888888866
No 13
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=3.2e-24 Score=211.28 Aligned_cols=118 Identities=16% Similarity=0.244 Sum_probs=113.3
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHH
Q 001037 866 GSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMEL 945 (1179)
Q Consensus 866 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~ 945 (1179)
+|+..|+++++.+++.|++||++|.+++|.+||+++..|+.+|.+.++||||.+ |++||||.+|.+||++++|.++.+|
T Consensus 2 ~s~~~~~~~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f 80 (123)
T 2dat_A 2 SSGSSGSPNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYEL-IRKPVDFKKIKERIRNHKYRSLGDL 80 (123)
T ss_dssp CCCCCCSCCCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHH-CSSCCCHHHHHHHHTTTCCCSHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHH-cCCCCCHHHHHHHHhCCCCCCHHHH
Confidence 456677789999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHhhh
Q 001037 946 VSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 984 (1179)
Q Consensus 946 ~~d~~lm~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~ 984 (1179)
..||.|||+||+.||+++|.+|++|..|+++|...++.+
T Consensus 81 ~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 81 EKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp HHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999998854
No 14
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.90 E-value=2.5e-23 Score=247.68 Aligned_cols=280 Identities=10% Similarity=0.125 Sum_probs=195.5
Q ss_pred hhHHHHHHHH--cCCCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchhhhccCCccEEEEcCCccCCChhhH
Q 001037 2 SMWQSELHKW--LPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV 79 (1179)
Q Consensus 2 sQW~~Ef~Kw--~P~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriKN~~Sk 79 (1179)
.||.++|.+| ++...+..+.|....... .....+|+|+||+.+.+....+. ..|++|||||||++.+. .
T Consensus 171 ~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~~I~i~T~~~l~~~~~~~~-~~~~liIiDE~H~~~~~--~ 241 (510)
T 2oca_A 171 TQMADDFVDYRLFSHAMIKKIGGGASKDDK------YKNDAPVVVGTWQTVVKQPKEWF-SQFGMMMNDECHLATGK--S 241 (510)
T ss_dssp HHHHHHHHHTTSSCGGGEEECGGGCCTTGG------GCTTCSEEEEEHHHHTTSCGGGG-GGEEEEEEETGGGCCHH--H
T ss_pred HHHHHHHHHhhcCCccceEEEecCCccccc------cccCCcEEEEeHHHHhhchhhhh-hcCCEEEEECCcCCCcc--c
Confidence 6999999999 566788877776433321 23578999999999987643322 36899999999999762 3
Q ss_pred HHHHHHhh-cCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCCCCchhHHHHHHHHHHHH
Q 001037 80 LARDLDRY-RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHR 158 (1179)
Q Consensus 80 ~tkaL~~L-ka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~ee~~~ii~r 158 (1179)
....+..+ .+.++|+||||| .+...+++.+..++.+.++.. +. .. .
T Consensus 242 ~~~il~~~~~~~~~l~lSATp-~~~~~~~~~~~~~~~~~~~~~----------~~-----~~------~----------- 288 (510)
T 2oca_A 242 ISSIISGLNNCMFKFGLSGSL-RDGKANIMQYVGMFGEIFKPV----------TT-----SK------L----------- 288 (510)
T ss_dssp HHHHGGGCTTCCEEEEEESCG-GGCSSCHHHHHHHHCSEECCC----------CC-----C-------------------
T ss_pred HHHHHHhcccCcEEEEEEeCC-CCCcccHHHhHHhhCCeEEee----------CH-----HH------H-----------
Confidence 44444566 677899999999 555566777777776643211 00 00 0
Q ss_pred HHHhhhhhhhhhhhhhhhcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHHHHHHHHHH
Q 001037 159 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 238 (1179)
Q Consensus 159 L~kvL~pf~LRRtKkDV~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~~sL~~~l~ 238 (1179)
+ -...+++.....+.+.++........ .. .+..
T Consensus 289 ----~-----------~~~~l~~~~~~~~~~~~~~~~~~~~~--------------------~~------~~~~------ 321 (510)
T 2oca_A 289 ----M-----------EDGQVTELKINSIFLRYPDEFTTKLK--------------------GK------TYQE------ 321 (510)
T ss_dssp ----------------------CCEEEEEEEECCHHHHHHHT--------------------TC------CHHH------
T ss_pred ----h-----------hCCcCCCceEEEEeecCChHHhcccc--------------------cc------chHH------
Confidence 0 00135666677777777765431100 00 0000
Q ss_pred HHHHHcCCCCCCCCcccccchhhhhcccCHHHHHHHHHHHHhhc-CCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCC
Q 001037 239 ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRT-GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 317 (1179)
Q Consensus 239 ~LRkicnhP~L~~~~l~~l~~~~lv~~SgKl~~L~~IL~el~~~-g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGst 317 (1179)
.+..++. ...|...+..++...... +.++|||+. +..++.|.+.|...+..+..++|++
T Consensus 322 ~~~~~~~-------------------~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~ 381 (510)
T 2oca_A 322 EIKIITG-------------------LSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEV 381 (510)
T ss_dssp HHHHHHT-------------------CHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSST
T ss_pred HHHHHhc-------------------cHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCC
Confidence 0111111 123555666666665544 567788887 8888889999999988999999999
Q ss_pred CHHHHHHHHHHhccCCCCccEEeeeh-hhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcc-eEEEEEEEe
Q 001037 318 SLEDRESAIVDFNSHDSDCFIFLLSI-RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR-EVKVIYMEA 393 (1179)
Q Consensus 318 s~eeRe~iI~~Fn~~ds~i~VLLlST-~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkk-eV~VyrLva 393 (1179)
+..+|.++++.|++ +.+.| |++| .++++|||++.+++||+++++||+..+.|++||++|.|+.+ .|.||.++.
T Consensus 382 ~~~~r~~i~~~f~~--g~~~v-Lv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~ 456 (510)
T 2oca_A 382 DTETRNIMKTLAEN--GKGII-IVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLID 456 (510)
T ss_dssp THHHHHHHHHHHHH--CCSCE-EEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEE
T ss_pred CHHHHHHHHHHHhC--CCCCE-EEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeec
Confidence 99999999999995 44555 5555 99999999999999999999999999999999999999987 688888765
No 15
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.89 E-value=6.3e-23 Score=253.00 Aligned_cols=123 Identities=23% Similarity=0.284 Sum_probs=75.9
Q ss_pred ccCHHHHHHHHHHHHh--hcCCeEEEeehhHHHHHHHHHHHHHcC----CeEEEEcC--------CCCHHHHHHHHHHhc
Q 001037 265 SCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQ----LVYRRIDG--------TTSLEDRESAIVDFN 330 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~--~~g~KVLIFSqft~~ldiLe~~L~~~G----i~~~rIdG--------sts~eeRe~iI~~Fn 330 (1179)
.+.|+..|.++|.... ..+.++||||+++..++.|.++|...+ +.+..++| +++.++|.+++++|+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 4579999999998874 357899999999999999999999988 89998855 999999999999999
Q ss_pred cCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 331 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 331 ~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
+ ++.+.| |++|.++++|||++.+++||+||+|||+..+.||+|| +|. +...++.|++
T Consensus 458 ~-~g~~~v-LVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~ 514 (696)
T 2ykg_A 458 A-SGDHNI-LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTS 514 (696)
T ss_dssp ----CCSC-SEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEES
T ss_pred h-cCCccE-EEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEec
Confidence 5 245555 7899999999999999999999999999999999999 885 4556666654
No 16
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.89 E-value=7.8e-24 Score=206.45 Aligned_cols=113 Identities=21% Similarity=0.292 Sum_probs=109.9
Q ss_pred CcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHH
Q 001037 874 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 953 (1179)
Q Consensus 874 ~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~ 953 (1179)
|+....++|++|+++|++++|++||+++..|.++|.+.++||||.+ |.+||||.+|.+||++++|.++.+|..||.|||
T Consensus 2 m~~~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 80 (116)
T 3iu5_A 2 MTVDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEV-VSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLF 80 (116)
T ss_dssp CSCCHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHH-hCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 7778899999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred hhhhhhcCCChHHHHHHHHHHHHHHHHHhhhcCC
Q 001037 954 KGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPD 987 (1179)
Q Consensus 954 ~na~~y~~~~se~~~~A~~l~~~f~~~~~~~~~~ 987 (1179)
.||+.||+++|++|++|.+|+++|...++..+..
T Consensus 81 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~~ 114 (116)
T 3iu5_A 81 NNAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQK 114 (116)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999988764
No 17
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=250.97 Aligned_cols=113 Identities=19% Similarity=0.243 Sum_probs=95.4
Q ss_pred cCHHHHHHHHHHHHhhc---CCeEEEeehhHHHHHHHHHHHHHc------CCeEEEEcCC--------CCHHHHHHHHHH
Q 001037 266 CGKLWILDRILIKLQRT---GHRVLLFSTMTKLLDILEEYLQWR------QLVYRRIDGT--------TSLEDRESAIVD 328 (1179)
Q Consensus 266 SgKl~~L~~IL~el~~~---g~KVLIFSqft~~ldiLe~~L~~~------Gi~~~rIdGs--------ts~eeRe~iI~~ 328 (1179)
+.|+..|.++|...... +.++||||+++.+++.|.++|... |+.+..++|+ ++..+|.++++.
T Consensus 380 ~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~ 459 (699)
T 4gl2_A 380 NEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISK 459 (699)
T ss_dssp --CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHH
Confidence 46777788888775543 789999999999999999999987 8999999999 999999999999
Q ss_pred hccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccC
Q 001037 329 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 381 (1179)
Q Consensus 329 Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIG 381 (1179)
|+++ .+. +|++|.++++|||++.+++||+||+|||+..+.||+||++|-|
T Consensus 460 F~~g--~~~-VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 460 FRTG--KIN-LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp HCC-----C-CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred HhcC--CCc-EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 9964 444 5789999999999999999999999999999999999986655
No 18
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.89 E-value=1.9e-23 Score=206.00 Aligned_cols=120 Identities=18% Similarity=0.258 Sum_probs=110.4
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHH
Q 001037 865 SGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVME 944 (1179)
Q Consensus 865 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~ 944 (1179)
+|.+...+++...+|++|++||+.|++++|.+||.++..|..+|.+.++||||.+ |.+||||.+|.+||++++|.++.+
T Consensus 3 ~~~~~k~~k~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~~~~~ 81 (124)
T 3mb4_A 3 SGISPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLT-IKKPMDMEKIRSHMMANKYQDIDS 81 (124)
T ss_dssp -------CCCCCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCCCSHHH
T ss_pred cCcCCCccccChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHH-cCCCCCHHHHHHHHHcCCCCCHHH
Confidence 4556677789999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHhhhc
Q 001037 945 LVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF 985 (1179)
Q Consensus 945 ~~~d~~lm~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~~ 985 (1179)
|..||.|||.||+.||+++|.+|++|..|+++|...++...
T Consensus 82 f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 82 MVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988753
No 19
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.87 E-value=9.1e-23 Score=201.72 Aligned_cols=112 Identities=14% Similarity=0.228 Sum_probs=108.3
Q ss_pred cHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHh
Q 001037 875 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 954 (1179)
Q Consensus 875 ~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~ 954 (1179)
+..+++.|+++++.|.+++|++||.++..|+++|++.++||||.+ |++||||.+|.+||+++.|.++.+|..||.|||+
T Consensus 7 ~~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 85 (126)
T 3mqm_A 7 AARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEK-ISDPLDLITIEKQILTGYYKTVEAFDADMLKVFR 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHH-CSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHH-cCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHHHHHhhhcCC
Q 001037 955 GAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPD 987 (1179)
Q Consensus 955 na~~y~~~~se~~~~A~~l~~~f~~~~~~~~~~ 987 (1179)
||+.||+++|.+|++|..|+++|...++.+.|.
T Consensus 86 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~ 118 (126)
T 3mqm_A 86 NAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQ 118 (126)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987764
No 20
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.87 E-value=1.5e-22 Score=198.63 Aligned_cols=108 Identities=16% Similarity=0.292 Sum_probs=105.8
Q ss_pred cHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHh
Q 001037 875 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 954 (1179)
Q Consensus 875 ~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~ 954 (1179)
++.+++.|+++++.|.+.+|.+||+++..|+++|.+.++||||.+ |++||||.+|.+||+++.|.++.+|+.||.|||.
T Consensus 6 p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 84 (120)
T 3ljw_A 6 PAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAI-IKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAK 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHH-cCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHHHHHhh
Q 001037 955 GAMQFYGFSHEVRSEARKVHDLFFDLLKI 983 (1179)
Q Consensus 955 na~~y~~~~se~~~~A~~l~~~f~~~~~~ 983 (1179)
||+.||+++|.+|++|..|.++|..+++.
T Consensus 85 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~ 113 (120)
T 3ljw_A 85 NAKTYNEPGSQVFKDANSIKKIFYMKKAE 113 (120)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999876
No 21
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.87 E-value=6.7e-21 Score=217.07 Aligned_cols=118 Identities=22% Similarity=0.222 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhc
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 347 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGg 347 (1179)
|...|..++... .+.++||||+....+..+...|...|+.+..++|+++.++|..+++.|+++ .+. +|++|.+++
T Consensus 237 ~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~-vlv~T~~~~ 311 (391)
T 1xti_A 237 KNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF--QRR-ILVATNLFG 311 (391)
T ss_dssp HHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT--CCS-EEEESCCCS
T ss_pred HHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC--CCc-EEEECChhh
Confidence 455566666543 578999999999999999999999999999999999999999999999954 344 578889999
Q ss_pred cCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEE
Q 001037 348 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 390 (1179)
Q Consensus 348 eGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~Vyr 390 (1179)
+|+|++.+++||+||+|||+..+.|++||++|.|+...+.++.
T Consensus 312 ~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 354 (391)
T 1xti_A 312 RGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 354 (391)
T ss_dssp SCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEE
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEE
Confidence 9999999999999999999999999999999999877765443
No 22
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.86 E-value=2.2e-21 Score=218.13 Aligned_cols=117 Identities=23% Similarity=0.292 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhc
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 347 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGg 347 (1179)
|+..|..++. ..+.++||||+....++.+.+.|...|+.+..++|+++..+|..+++.|+++ .+. +|++|.+++
T Consensus 226 ~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~-vlv~T~~~~ 299 (367)
T 1hv8_A 226 RFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQK--KIR-ILIATDVMS 299 (367)
T ss_dssp HHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTT--SSS-EEEECTTHH
T ss_pred HHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcC--CCe-EEEECChhh
Confidence 4444444443 5678999999999999999999999999999999999999999999999954 444 577889999
Q ss_pred cCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEE
Q 001037 348 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 390 (1179)
Q Consensus 348 eGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~Vyr 390 (1179)
+|+|++.+++||+++++||+..+.||+||++|.|+...+.+++
T Consensus 300 ~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~ 342 (367)
T 1hv8_A 300 RGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISII 342 (367)
T ss_dssp HHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEE
T ss_pred cCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEE
Confidence 9999999999999999999999999999999999988775554
No 23
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.86 E-value=1.4e-21 Score=237.47 Aligned_cols=110 Identities=13% Similarity=0.148 Sum_probs=98.3
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHcCCe--------EEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCc
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWRQLV--------YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ 353 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~Gi~--------~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ 353 (1179)
.+.|+||||+....++.|...|...+.. ++.++|.++ ++|..++++|++++..+.+||++|+++++|||++
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip 516 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAP 516 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccch
Confidence 4689999999999999999999876543 778999986 4799999999987777888999999999999999
Q ss_pred ccceeeecCCCCCcchHHHHhhcccccCC---cceEEEEEEE
Q 001037 354 SADTVIIYDPDPNPKNEEQAVARAHRIGQ---KREVKVIYME 392 (1179)
Q Consensus 354 ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQ---kkeV~VyrLv 392 (1179)
.+++||+++++||+..+.|++||++|+|+ +..+.|+.++
T Consensus 517 ~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 517 TCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp TEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred heeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 99999999999999999999999999995 5567888876
No 24
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.85 E-value=7.6e-22 Score=196.15 Aligned_cols=115 Identities=12% Similarity=0.140 Sum_probs=109.6
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHH
Q 001037 869 NFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSD 948 (1179)
Q Consensus 869 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d 948 (1179)
..++.-.+.+.+.|+.+|+.|.+.+|++||+++..|+++|.+.++||||.+ |++||||.+|.+||+++.|.++.+|+.|
T Consensus 9 ~~~~~~~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~i-Ik~PMdL~tI~~kL~~~~Y~s~~ef~~D 87 (130)
T 3k2j_A 9 SGVDLGTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQ-IKMPISLQQIRTKLKNQEYETLDHLECD 87 (130)
T ss_dssp -CCSCHHHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHH
Confidence 344556789999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHhhh
Q 001037 949 VQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 984 (1179)
Q Consensus 949 ~~lm~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~ 984 (1179)
|.|||.||+.||+++|.+|++|..|.++|...++..
T Consensus 88 v~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 123 (130)
T 3k2j_A 88 LNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKEL 123 (130)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998865
No 25
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.85 E-value=2.7e-20 Score=213.40 Aligned_cols=118 Identities=17% Similarity=0.250 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhh
Q 001037 267 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 346 (1179)
Q Consensus 267 gKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AG 346 (1179)
.|+..|..++... .+.++||||+....++.+...|...|+.+..++|+++..+|..+++.|+++ .+. +|++|.++
T Consensus 244 ~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~-vLv~T~~~ 318 (400)
T 1s2m_A 244 QKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQG--KVR-TLVCSDLL 318 (400)
T ss_dssp GHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTT--SSS-EEEESSCS
T ss_pred hHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcC--CCc-EEEEcCcc
Confidence 3555566666543 467999999999999999999999999999999999999999999999954 444 57888999
Q ss_pred ccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEE
Q 001037 347 GRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 389 (1179)
Q Consensus 347 geGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~Vy 389 (1179)
++|+|++.+++||+||+|||+..+.||+||++|.|+...+.++
T Consensus 319 ~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l 361 (400)
T 1s2m_A 319 TRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINL 361 (400)
T ss_dssp SSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEE
T ss_pred ccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEE
Confidence 9999999999999999999999999999999999987665444
No 26
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.85 E-value=8.5e-22 Score=200.37 Aligned_cols=121 Identities=17% Similarity=0.238 Sum_probs=107.1
Q ss_pred CCcHHHHHHHHHHHHHHHHhhh-ccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHH
Q 001037 873 KMSDVIQRRCKNVISKLQRRIE-KEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 951 (1179)
Q Consensus 873 ~~~~~~~~~c~~~~~~~~~~~~-~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~l 951 (1179)
++.......|+.+++.|.++.+ .+||+++..|+.+|.+.++||||.+ |.+||||.+|.+||+++.|.++.+|..||.|
T Consensus 20 ~~~~~~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l 98 (150)
T 3tlp_A 20 SKKNIRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKI-ILEPMDLKIIEHNIRNDKYAGEEGMIEDMKL 98 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHH-hCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 3445568899999999999995 7899999999999999999999999 9999999999999999999999999999999
Q ss_pred HHhhhhhhcCCChHHHHHHHHHHHHHHHHHhhhc--CCCchHHhh
Q 001037 952 MLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF--PDTDFREAR 994 (1179)
Q Consensus 952 m~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~~--~~~~~~~~~ 994 (1179)
||.||+.||+++|.+|++|..|.++|...++..+ ||.|+....
T Consensus 99 i~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~pd~d~~~~p 143 (150)
T 3tlp_A 99 MFRNARHYNEEGSQVYNDAHILEKLLKEKRKELGPLPDDDDMASP 143 (150)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHCCC---------
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCCChhhcCCc
Confidence 9999999999999999999999999999999999 677765543
No 27
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.84 E-value=3.9e-21 Score=190.81 Aligned_cols=113 Identities=16% Similarity=0.259 Sum_probs=107.6
Q ss_pred CcHHHHHHHHHHHHHHHHhhhc-cCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHH
Q 001037 874 MSDVIQRRCKNVISKLQRRIEK-EGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 952 (1179)
Q Consensus 874 ~~~~~~~~c~~~~~~~~~~~~~-~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm 952 (1179)
-++..++.|+.|++.|.+++|. .||+++..|..+|.+.++||||.+ |++||||.+|.+||+++.|.++.+|..||.||
T Consensus 8 ~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li 86 (129)
T 2grc_A 8 NPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYEL-IRKPVDFKKIKERIRNHKYRSLNDLEKDVMLL 86 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 4688999999999999999974 899999999999999999999999 99999999999999999999999999999999
Q ss_pred HhhhhhhcCCChHHHHHHHHHHHHHHHHHhhhcCC
Q 001037 953 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPD 987 (1179)
Q Consensus 953 ~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~~~~ 987 (1179)
|.||+.||+++|.+|++|..|+++|...++....+
T Consensus 87 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 87 CQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999998876543
No 28
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.84 E-value=1.1e-19 Score=209.28 Aligned_cols=118 Identities=23% Similarity=0.295 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhc
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 347 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGg 347 (1179)
|+..|..++... .+.++||||+....++.+...|...|+.+..++|+++..+|..+++.|+++. +. +|++|++++
T Consensus 263 k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~-vlv~T~~~~ 337 (410)
T 2j0s_A 263 KFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA--SR-VLISTDVWA 337 (410)
T ss_dssp HHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTS--SC-EEEECGGGS
T ss_pred HHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCC--CC-EEEECChhh
Confidence 445555555543 3569999999999999999999999999999999999999999999999644 44 578899999
Q ss_pred cCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEE
Q 001037 348 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 390 (1179)
Q Consensus 348 eGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~Vyr 390 (1179)
+|||++.+++||+||+||++..+.||+||++|.|++..+.++.
T Consensus 338 ~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~ 380 (410)
T 2j0s_A 338 RGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV 380 (410)
T ss_dssp SSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred CcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEe
Confidence 9999999999999999999999999999999999887654443
No 29
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=215.77 Aligned_cols=118 Identities=24% Similarity=0.331 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhh
Q 001037 267 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 346 (1179)
Q Consensus 267 gKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AG 346 (1179)
.|+..|..++... .+.++||||+....++.+...|...++.+..++|+++.++|..+++.|+++ .++ +|++|.++
T Consensus 266 ~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g--~~~-vlv~T~~~ 340 (414)
T 3eiq_A 266 WKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSG--SSR-VLITTDLL 340 (414)
T ss_dssp THHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC------CEEECSSC
T ss_pred hHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcC--CCc-EEEECCcc
Confidence 3677777777654 467999999999999999999999999999999999999999999999853 444 58889999
Q ss_pred ccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEE
Q 001037 347 GRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 389 (1179)
Q Consensus 347 geGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~Vy 389 (1179)
++|||++.+++||+||++||+..+.||+||++|.|+...+.++
T Consensus 341 ~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~ 383 (414)
T 3eiq_A 341 ARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINM 383 (414)
T ss_dssp C--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEE
T ss_pred ccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEE
Confidence 9999999999999999999999999999999999987765444
No 30
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=189.11 Aligned_cols=111 Identities=23% Similarity=0.398 Sum_probs=105.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcc--cCcccHHHHHHHH
Q 001037 872 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR--LEYNGVMELVSDV 949 (1179)
Q Consensus 872 ~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~--~~Y~~v~~~~~d~ 949 (1179)
++|++..+++|..|+++|.. |.++..|+..++. ++||||.+ |++||||.+|.+||++ ++|.++.+|+.||
T Consensus 15 ~~m~p~~~~~c~~il~~L~~------~~~s~~F~~Pv~~-~~pdY~~i-Ik~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv 86 (135)
T 2yyn_A 15 VKLTPIDKRKCERLLLFLYC------HEMSLAFQDPVPL-TVPDYYKI-IKNPMDLSTIKKRLQEDYSMYSKPEDFVADF 86 (135)
T ss_dssp -CCCHHHHHHHHHHHHHHHT------SGGGGGGSSCCCT-TSTTHHHH-CSSCCCHHHHHHHHHSSSCCCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHh------CccchhhcCCCcc-cCCCHHHH-cCCCCCHHHHHHHHhccccCCCCHHHHHHHH
Confidence 48999999999999999985 5789999996665 89999999 9999999999999998 5999999999999
Q ss_pred HHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHhhhcCCCch
Q 001037 950 QFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDF 990 (1179)
Q Consensus 950 ~lm~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~~~~~~~ 990 (1179)
.|||.||+.||+++|.+|++|..|+++|...|+..||+.+|
T Consensus 87 ~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~ 127 (135)
T 2yyn_A 87 RLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYPEKRF 127 (135)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 99999999999999999999999999999999999999997
No 31
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.83 E-value=7.1e-21 Score=190.81 Aligned_cols=110 Identities=14% Similarity=0.174 Sum_probs=104.6
Q ss_pred CcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHH
Q 001037 874 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 953 (1179)
Q Consensus 874 ~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~ 953 (1179)
.+..+|..++++|..|.+++|++||.+|+.|++||+|+ |+||. ++||||..|.+||+++.|.++++|..||.+||
T Consensus 4 v~~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~---k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf 78 (147)
T 3iu6_A 4 VTLLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN---KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVL 78 (147)
T ss_dssp CCCHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT---SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC---CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999 89997 79999999999999999999999999999999
Q ss_pred hhhhhhcCCChHHHHHHHHHHHHHHHHHhhhcCCC
Q 001037 954 KGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDT 988 (1179)
Q Consensus 954 ~na~~y~~~~se~~~~A~~l~~~f~~~~~~~~~~~ 988 (1179)
.||+.||.++|++|+||..|+++|...+....++.
T Consensus 79 ~NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~g 113 (147)
T 3iu6_A 79 ERARRMNRTDSEIYEDAVELQQFFIKIRDELCKNG 113 (147)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999998876653
No 32
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.82 E-value=7.1e-19 Score=206.35 Aligned_cols=116 Identities=23% Similarity=0.353 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhc
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 347 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGg 347 (1179)
|...|.++|.. .+.++||||+....++.|...|...|+.+..++|+++..+|..+++.|+++ .+. +|++|++++
T Consensus 288 k~~~l~~~l~~---~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g--~~~-vLvaT~v~~ 361 (434)
T 2db3_A 288 KRSKLIEILSE---QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNG--SMK-VLIATSVAS 361 (434)
T ss_dssp HHHHHHHHHHH---CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTS--SCS-EEEECGGGT
T ss_pred HHHHHHHHHHh---CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcC--CCc-EEEEchhhh
Confidence 45555555554 345699999999999999999999999999999999999999999999954 444 588899999
Q ss_pred cCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEE
Q 001037 348 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 389 (1179)
Q Consensus 348 eGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~Vy 389 (1179)
+|||++.+++||+||+||++..|.||+||++|.|+...+.++
T Consensus 362 rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~ 403 (434)
T 2db3_A 362 RGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSF 403 (434)
T ss_dssp SSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred CCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEE
Confidence 999999999999999999999999999999999998766544
No 33
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.81 E-value=6.1e-19 Score=202.92 Aligned_cols=118 Identities=25% Similarity=0.331 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhc
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 347 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGg 347 (1179)
|...|.+++... ..+.++||||+....++.+...|...|+.+..++|+++.++|..+++.|+++. +. +|++|++++
T Consensus 262 ~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~-vlvaT~~~~ 337 (417)
T 2i4i_A 262 KRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK--SP-ILVATAVAA 337 (417)
T ss_dssp HHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTS--SC-EEEECHHHH
T ss_pred HHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCC--CC-EEEECChhh
Confidence 444555555442 35789999999999999999999999999999999999999999999999644 44 588889999
Q ss_pred cCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEE
Q 001037 348 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 389 (1179)
Q Consensus 348 eGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~Vy 389 (1179)
+|||++.+++||+||+||++..+.||+||++|.|+...+.++
T Consensus 338 ~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~ 379 (417)
T 2i4i_A 338 RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 379 (417)
T ss_dssp TTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEE
T ss_pred cCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEE
Confidence 999999999999999999999999999999999987655443
No 34
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.81 E-value=1.1e-18 Score=198.24 Aligned_cols=106 Identities=20% Similarity=0.305 Sum_probs=96.9
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeec
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY 361 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~ 361 (1179)
.+.++||||+....++.+...|...++.+..++|+++..+|..+++.|+++ .+. +|++|.++++|||++.+++||+|
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~-vlv~T~~~~~Gidip~~~~Vi~~ 318 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREG--RSK-VLITTNVLARGIDIPTVSMVVNY 318 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT--SCC-EEEECGGGSSSCCCTTEEEEEES
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCC--CCC-EEEECChhhcCCCcccCCEEEEc
Confidence 467999999999999999999999999999999999999999999999954 444 58889999999999999999999
Q ss_pred CCCC------CcchHHHHhhcccccCCcceEEEEE
Q 001037 362 DPDP------NPKNEEQAVARAHRIGQKREVKVIY 390 (1179)
Q Consensus 362 D~pW------NP~~~eQAiGRIhRIGQkkeV~Vyr 390 (1179)
|+|| |+..+.|++||++|.|+...+.++.
T Consensus 319 ~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~ 353 (395)
T 3pey_A 319 DLPTLANGQADPATYIHRIGRTGRFGRKGVAISFV 353 (395)
T ss_dssp SCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred CCCCCCcCCCCHHHhhHhccccccCCCCceEEEEE
Confidence 9999 9999999999999999877665544
No 35
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.81 E-value=6.8e-20 Score=178.84 Aligned_cols=115 Identities=10% Similarity=0.115 Sum_probs=106.6
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHH
Q 001037 866 GSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMEL 945 (1179)
Q Consensus 866 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~ 945 (1179)
+|...-++.+....+.|..|++.|..+ ..+..|+.+|...++||||++ |.+||||.+|.+||+++.|.++.+|
T Consensus 2 ~s~~k~~~~~~~~~~~c~~il~~l~~~------~~s~~F~~pv~~~~~pdY~~~-I~~Pmdl~tI~~kl~~~~Y~~~~~f 74 (117)
T 3g0l_A 2 MSVKKPKRDDSKDLALCSMILTEMETH------EDAWPFLLPVNLKLVPGYKKV-IKKPMDFSTIREKLSSGQYPNLETF 74 (117)
T ss_dssp TTCCCCCCCCTTHHHHHHHHHHHHHTS------TTCGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHH
T ss_pred CCCcCCCcCCHHHHHHHHHHHHHHHhC------CCchhhcCcCChhhcCChHHH-cCCCCCHHHHHHHHhCCCCCCHHHH
Confidence 455566688889999999999999865 468999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHhhhcCC
Q 001037 946 VSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPD 987 (1179)
Q Consensus 946 ~~d~~lm~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~~~~ 987 (1179)
+.||.|||.||+.||+++|.+|++|..|.++|...++.+|=.
T Consensus 75 ~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~ 116 (117)
T 3g0l_A 75 ALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFKV 116 (117)
T ss_dssp HHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999988743
No 36
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.80 E-value=4e-19 Score=197.75 Aligned_cols=103 Identities=19% Similarity=0.319 Sum_probs=93.1
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeec
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY 361 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~ 361 (1179)
.+.++||||+....++.+...|. .+..++|+++..+|.++++.|+++ .+. +|++|.++++|+|++.+++||+|
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~--~~~-vlv~T~~~~~Gid~~~~~~Vi~~ 291 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREG--EYD-MLITTDVASRGLDIPLVEKVINF 291 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTT--SCS-EEEECHHHHTTCCCCCBSEEEES
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcC--CCc-EEEEcCccccCCCccCCCEEEEe
Confidence 57899999999999999988886 578899999999999999999954 444 57889999999999999999999
Q ss_pred CCCCCcchHHHHhhcccccCCcceEEEEEE
Q 001037 362 DPDPNPKNEEQAVARAHRIGQKREVKVIYM 391 (1179)
Q Consensus 362 D~pWNP~~~eQAiGRIhRIGQkkeV~VyrL 391 (1179)
++|||+..+.|++||++|.|+...+.+|..
T Consensus 292 ~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 292 DAPQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp SCCSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred cCCCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 999999999999999999999888776655
No 37
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.80 E-value=2.5e-18 Score=207.00 Aligned_cols=251 Identities=17% Similarity=0.164 Sum_probs=175.1
Q ss_pred hhHHHHHHHHcCCCcEEEEEcChhH--HhHHHhhHhhhCCCCEEEEcHHHHHhc--hhhhccCCccEEEEcCCccCCChh
Q 001037 2 SMWQSELHKWLPSVSCIYYVGAKDQ--RSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRE 77 (1179)
Q Consensus 2 sQW~~Ef~Kw~P~l~Vvvy~G~~~~--R~~l~~~~~~~~~~dVVITTYE~L~~d--~~~L~ki~wdlVIIDEAHriKN~~ 77 (1179)
.||..+|.++ ++.+..+.+.... +.... .......++|+++|++.+... ...+....+.+|||||||.+....
T Consensus 79 ~q~~~~l~~~--gi~~~~l~~~~~~~~~~~~~-~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g 155 (523)
T 1oyw_A 79 KDQVDQLQAN--GVAAACLNSTQTREQQLEVM-TGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWG 155 (523)
T ss_dssp HHHHHHHHHT--TCCEEEECTTSCHHHHHHHH-HHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTS
T ss_pred HHHHHHHHHc--CCcEEEEeCCCCHHHHHHHH-HHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCC
Confidence 5788888886 4566666665432 22222 234456799999999999654 244555789999999999985432
Q ss_pred ---hHHHHH----HHhhcCCcEEEEeccCCCCChHHHHHHHhhhcCCCCCChHHHHHHhcCccccCCCCCCCCchhHHHH
Q 001037 78 ---SVLARD----LDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETE 150 (1179)
Q Consensus 78 ---Sk~tka----L~~Lka~~RLLLTGTPiqN~l~EL~sLL~fL~P~if~~~~~F~~~f~~p~~~~~~~~~~e~~~l~~e 150 (1179)
...+.. +..+....+++|||||......++...+.+-.|.++.. .+
T Consensus 156 ~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~----------~~----------------- 208 (523)
T 1oyw_A 156 HDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS----------SF----------------- 208 (523)
T ss_dssp SCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC----------CC-----------------
T ss_pred CccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC----------CC-----------------
Confidence 122222 23334567899999997655555555444322211100 00
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhcCCCCceEEEEEecCCHHHHHHHHHHHHhccccCCchhHHHhhhcChhhHHHHH
Q 001037 151 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVY 230 (1179)
Q Consensus 151 e~~~ii~rL~kvL~pf~LRRtKkDV~~~LP~k~e~vV~~~LS~~Qr~lYd~i~~~~~~~l~~~~~~~~l~~~~~~~~~~~ 230 (1179)
.-|.....++.
T Consensus 209 ---------------------------~r~~l~~~v~~------------------------------------------ 219 (523)
T 1oyw_A 209 ---------------------------DRPNIRYMLME------------------------------------------ 219 (523)
T ss_dssp ---------------------------CCTTEEEEEEE------------------------------------------
T ss_pred ---------------------------CCCceEEEEEe------------------------------------------
Confidence 00111000000
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCcccccchhhhhcccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeE
Q 001037 231 KTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVY 310 (1179)
Q Consensus 231 ~sL~~~l~~LRkicnhP~L~~~~l~~l~~~~lv~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~ 310 (1179)
...++..|.++|... .+.++||||.....++.+...|...|+.+
T Consensus 220 ----------------------------------~~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~ 263 (523)
T 1oyw_A 220 ----------------------------------KFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISA 263 (523)
T ss_dssp ----------------------------------CSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCE
T ss_pred ----------------------------------CCCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCE
Confidence 011333444444432 57899999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEE
Q 001037 311 RRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 390 (1179)
Q Consensus 311 ~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~Vyr 390 (1179)
..++|+++.++|..+++.|.++. +. +|++|.++++|||++.++.||+|++|+|+..+.|++||++|.|+...+.+++
T Consensus 264 ~~~h~~l~~~~R~~~~~~f~~g~--~~-vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~ 340 (523)
T 1oyw_A 264 AAYHAGLENNVRADVQEKFQRDD--LQ-IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340 (523)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTS--CS-EEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred EEecCCCCHHHHHHHHHHHHcCC--Ce-EEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEe
Confidence 99999999999999999999644 44 5788899999999999999999999999999999999999999987765543
No 38
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.80 E-value=4.5e-20 Score=210.19 Aligned_cols=118 Identities=20% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhc
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 347 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGg 347 (1179)
|...|..++... .+.++||||+....++.+...|...++.+..++|+++..+|..+++.|+++ .+. +|++|.+++
T Consensus 246 ~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~-vlv~T~~~~ 320 (394)
T 1fuu_A 246 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG--SSR-ILISTDLLA 320 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCC--CCc-EEEECChhh
Confidence 444555555543 457999999999999999999999999999999999999999999999853 344 578899999
Q ss_pred cCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEE
Q 001037 348 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 390 (1179)
Q Consensus 348 eGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~Vyr 390 (1179)
+|+|++.+++||+||+||++..+.|++||++|.|+...+.+++
T Consensus 321 ~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 363 (394)
T 1fuu_A 321 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFV 363 (394)
T ss_dssp -------------------------------------------
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEE
Confidence 9999999999999999999999999999999999887765543
No 39
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.79 E-value=2.4e-19 Score=173.67 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=98.3
Q ss_pred cHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHh
Q 001037 875 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 954 (1179)
Q Consensus 875 ~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~ 954 (1179)
++..++.|+.|+++|..+ ..+..|+.+|++.++||||.+ |++||||.+|.+||+++.|.++.+|..||.|||.
T Consensus 5 ~~~l~~~~~~il~~l~~~------~~~~~F~~pvd~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~ 77 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSH------PSAWPFMEPVKKSEAPDYYEV-IRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIA 77 (112)
T ss_dssp HHHHHHHHHHHHHHHHHS------GGGGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC------CCchhhcCCCCcccccCHHHH-ccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence 578899999999999874 579999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHHHHHhhh
Q 001037 955 GAMQFYGFSHEVRSEARKVHDLFFDLLKIA 984 (1179)
Q Consensus 955 na~~y~~~~se~~~~A~~l~~~f~~~~~~~ 984 (1179)
||+.||+++|.+|++|..|.++|...++..
T Consensus 78 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 78 NCREYNPPDSEYCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999998853
No 40
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.79 E-value=4.7e-18 Score=194.62 Aligned_cols=117 Identities=18% Similarity=0.244 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhc
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 347 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGg 347 (1179)
|+..|..++... .+.++||||+....++.+...|...++.+..++|+++..+|..+++.|+++ .+. +|++|.+++
T Consensus 253 ~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~-vlv~T~~~~ 327 (412)
T 3fht_A 253 KFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG--KEK-VLVTTNVCA 327 (412)
T ss_dssp HHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT--SCS-EEEECGGGT
T ss_pred HHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCC--CCc-EEEEcCccc
Confidence 344444444432 467999999999999999999999999999999999999999999999954 444 588899999
Q ss_pred cCCCCcccceeeecCCCCCc------chHHHHhhcccccCCcceEEEE
Q 001037 348 RGLNLQSADTVIIYDPDPNP------KNEEQAVARAHRIGQKREVKVI 389 (1179)
Q Consensus 348 eGLNLQ~AdtVIi~D~pWNP------~~~eQAiGRIhRIGQkkeV~Vy 389 (1179)
+|||++.+++||+||+||++ ..+.||+||++|.|+...+.++
T Consensus 328 ~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~ 375 (412)
T 3fht_A 328 RGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNM 375 (412)
T ss_dssp SSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEE
T ss_pred cCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEE
Confidence 99999999999999999987 5899999999999987665443
No 41
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.78 E-value=1.7e-19 Score=177.58 Aligned_cols=107 Identities=14% Similarity=0.262 Sum_probs=99.5
Q ss_pred CcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHH
Q 001037 874 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 953 (1179)
Q Consensus 874 ~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~ 953 (1179)
-.+..+++|+.|+++|..+.+ +..|..+|.+.++||||.+ |++||||.+|.+||+++.|.++.+|+.||.|||
T Consensus 7 ~~~~~~~~c~~il~~l~~~~~------s~~F~~pv~~~~~pdY~~~-I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~ 79 (123)
T 3q2e_A 7 VESNWKKQCKELVNLIFQCED------SEPFRQPVDLVEYPDYRDI-IDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIF 79 (123)
T ss_dssp ---CHHHHHHHHHHHHHTSGG------GGGGSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCC------cHhhcCCCChhhcCCHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 345689999999999998754 8999999999999999999 999999999999999999999999999999999
Q ss_pred hhhhhhcCC-ChHHHHHHHHHHHHHHHHHhhhcCC
Q 001037 954 KGAMQFYGF-SHEVRSEARKVHDLFFDLLKIAFPD 987 (1179)
Q Consensus 954 ~na~~y~~~-~se~~~~A~~l~~~f~~~~~~~~~~ 987 (1179)
.||+.||++ +|.+|++|..|.++|...++..+|+
T Consensus 80 ~Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~ 114 (123)
T 3q2e_A 80 SNAKAYTPNKRSKIYSMTLRLSALFEEKMKKISSD 114 (123)
T ss_dssp HHHHHHSCCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999996 9999999999999999999998864
No 42
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.78 E-value=6e-19 Score=174.68 Aligned_cols=112 Identities=15% Similarity=0.206 Sum_probs=103.7
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcc--cccCCCccccccCCccchHHHHHHhcccCcccHHH
Q 001037 867 SSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWK--RIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVME 944 (1179)
Q Consensus 867 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~--r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~ 944 (1179)
+....++++..++..|+.|+++|++ |..+..|..+++ +.++||||++ |++||||.+|.+||++++|.++.+
T Consensus 11 ~~~~~~r~~~~l~~~~~~il~~L~~------~~~a~~F~~PVd~~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~e 83 (127)
T 2oss_A 11 NPNKPKRQTNQLQYLLRVVLKTLWK------HQFAWPFQQPVDAVKLNLPDYYKI-IKTPMDMGTIKKRLENNYYWNAQE 83 (127)
T ss_dssp CTTSCCCCCHHHHHHHHTHHHHHHT------STTCGGGSSCCCTTTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHH
T ss_pred CcCcCcccHHHHHHHHHHHHHHHHh------CccchhhcCCCChhhccCccHHHH-cCCCCCHHHHHHHHHcCCCCCHHH
Confidence 4455669999999999999999986 467899999987 5699999999 999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHhhhc
Q 001037 945 LVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF 985 (1179)
Q Consensus 945 ~~~d~~lm~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~~ 985 (1179)
|..||.|||.||+.||+.+|.+|.+|..|.++|...++.+-
T Consensus 84 f~~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp 124 (127)
T 2oss_A 84 CIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELP 124 (127)
T ss_dssp HHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999998653
No 43
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.77 E-value=4.5e-19 Score=177.30 Aligned_cols=112 Identities=15% Similarity=0.295 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhh
Q 001037 876 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 955 (1179)
Q Consensus 876 ~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~n 955 (1179)
+..++.|..|++.|..+.+ +..|+.+|...++||||.+ |.+||||.+|.+||+++.|.++.+|+.||.|||.|
T Consensus 20 ~~l~~~~~~il~~l~~~~~------s~~F~~pv~~~~~pdY~~i-I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 92 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQCED------SEPFRQPVDLLEYPDYRDI-IDTPMDFATVRETLEAGNYESPMELCKDVRLIFSN 92 (135)
T ss_dssp STHHHHHHHHHHHHHHSGG------GGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC------ChhhcCCCChhhCCCHHHH-hCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 5689999999999998765 8999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCC-ChHHHHHHHHHHHHHHHHHhhhcCCCchHHhhhhccc
Q 001037 956 AMQFYGF-SHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSF 999 (1179)
Q Consensus 956 a~~y~~~-~se~~~~A~~l~~~f~~~~~~~~~~~~~~~~~~~~~~ 999 (1179)
|+.||++ +|.+|++|..|.++|...++..+|+ -+.|+.+
T Consensus 93 a~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~-----~~~~~r~ 132 (135)
T 3mb3_A 93 SKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSD-----YKSALRF 132 (135)
T ss_dssp HHHHSCCTTCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHTCC
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHh
Confidence 9999998 9999999999999999999998664 3555544
No 44
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.77 E-value=1.1e-17 Score=193.63 Aligned_cols=114 Identities=20% Similarity=0.195 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEE-EEcCCCCHHHHHHHHHHhccCCCCccEEeee---h
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYR-RIDGTTSLEDRESAIVDFNSHDSDCFIFLLS---I 343 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~-rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlS---T 343 (1179)
|...|..+|.. .+.++||||+....++.+...|...|+.+. .++|. +|. ++.|++ +.+.||+++ |
T Consensus 240 ~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~--g~~~vLvat~s~T 308 (414)
T 3oiy_A 240 SKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKV--GKINILIGVQAYY 308 (414)
T ss_dssp CHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHT--TSCSEEEEECCTT
T ss_pred HHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhC--CCCeEEEEecCcC
Confidence 44455556655 358999999999999999999999999998 88884 444 999995 456665553 9
Q ss_pred hhhccCCCCcc-cceeeecCCC--CCcchHHHHhhcccccCCc--ceEEEEEEE
Q 001037 344 RAAGRGLNLQS-ADTVIIYDPD--PNPKNEEQAVARAHRIGQK--REVKVIYME 392 (1179)
Q Consensus 344 ~AGgeGLNLQ~-AdtVIi~D~p--WNP~~~eQAiGRIhRIGQk--keV~VyrLv 392 (1179)
+++++|||++. +++||+||+| +++..+.|++||++|.|+. +.-.++.++
T Consensus 309 ~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 309 GKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp CCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred chhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 99999999999 9999999999 9999999999999999974 344455553
No 45
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=5.8e-19 Score=173.37 Aligned_cols=102 Identities=11% Similarity=0.171 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhh
Q 001037 876 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 955 (1179)
Q Consensus 876 ~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~n 955 (1179)
...+..|+.|+++|+.+ ..+..|+.+|++.++||||++ |++||||.+|.+||++++|.++.+|..||.|||.|
T Consensus 6 ~pl~~~l~~il~~l~~~------~~~~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~N 78 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEK------DTGNIFSEPVPLSEVPDYLDH-IKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSN 78 (121)
T ss_dssp CHHHHHHHHHHHHHHHH------CSSCSSSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcC------CccHhhCCcCCccccCCHHHH-cCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 34678999999999986 367899999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCChHHHHHHHHHHHHHHHHHhhh
Q 001037 956 AMQFYGFSHEVRSEARKVHDLFFDLLKIA 984 (1179)
Q Consensus 956 a~~y~~~~se~~~~A~~l~~~f~~~~~~~ 984 (1179)
|+.||+++|.+|++|..|++.|...|+.+
T Consensus 79 a~~yN~~~s~~~~~A~~L~~~~~~~l~~~ 107 (121)
T 2d9e_A 79 CLKYNAKDTIFYRAAVRLREQGGAVLRQA 107 (121)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887654
No 46
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.76 E-value=7.4e-19 Score=174.69 Aligned_cols=111 Identities=19% Similarity=0.260 Sum_probs=97.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccc--cCCCccccccCCccchHHHHHHhcccCcccHHHHH
Q 001037 869 NFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRI--ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELV 946 (1179)
Q Consensus 869 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~--~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~ 946 (1179)
...++|++. .+.|..|+++|...++ +.++..|+.++... ++||||.+ |++||||.+|.+||+++.|.++.+|.
T Consensus 15 ~k~~~~~~~-l~~c~~il~~L~~~~~---~~~a~~F~~PVd~~~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~ 89 (130)
T 2ouo_A 15 EKSSKVSEQ-LKCCSGILKEMFAKKH---AAYAWPFYKPVDVEALGLHDYCDI-IKHPMDMSTIKSKLEAREYRDAQEFG 89 (130)
T ss_dssp ----CHHHH-HHHHHHHHHHHTSGGG---HHHHGGGSSCCCTTSTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHH
T ss_pred CCCcccHHH-HHHHHHHHHHHHhCCc---chhHHHhcCCCChhhccCCcHHHH-cCCCCCHHHHHHHHHcCCCCCHHHHH
Confidence 344567765 5789999999987654 35888999997654 69999999 99999999999999999999999999
Q ss_pred HHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHhhh
Q 001037 947 SDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 984 (1179)
Q Consensus 947 ~d~~lm~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~ 984 (1179)
.||.|||.||+.||+++|.+|++|..|.++|...++.+
T Consensus 90 ~Dv~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 127 (130)
T 2ouo_A 90 ADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 127 (130)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999864
No 47
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.76 E-value=1.7e-17 Score=202.65 Aligned_cols=106 Identities=17% Similarity=0.159 Sum_probs=97.8
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeec
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY 361 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~ 361 (1179)
.+.++||||.....++.|...|...|+.+..++|+++.++|..+++.|..+ .+. +|++|.++++|||++.++.||+|
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g--~~~-VlVAT~a~~~GID~p~V~~VI~~ 342 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSAN--EIQ-VVVATVAFGMGIDKPDVRFVIHH 342 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT--SSS-EEEECTTSCTTCCCSCEEEEEES
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC--CCe-EEEEechhhcCCCcccccEEEEe
Confidence 578999999999999999999999999999999999999999999999954 444 57888999999999999999999
Q ss_pred CCCCCcchHHHHhhcccccCCcceEEEEE
Q 001037 362 DPDPNPKNEEQAVARAHRIGQKREVKVIY 390 (1179)
Q Consensus 362 D~pWNP~~~eQAiGRIhRIGQkkeV~Vyr 390 (1179)
++|+++..|.|++||++|.|+...+.+++
T Consensus 343 ~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~ 371 (591)
T 2v1x_A 343 SMSKSMENYYQESGRAGRDDMKADCILYY 371 (591)
T ss_dssp SCCSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred CCCCCHHHHHHHhccCCcCCCCceEEEEE
Confidence 99999999999999999999987776554
No 48
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=169.98 Aligned_cols=105 Identities=15% Similarity=0.216 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhh
Q 001037 877 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 956 (1179)
Q Consensus 877 ~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na 956 (1179)
..++.|+.|+++|++. ..+..|..++++.++||||++ |++||||.+|.+||+++.|.++.+|..||.|||+||
T Consensus 8 ~l~~~l~~il~~L~~~------~~~~~F~~PVd~~~~pdY~~i-Ik~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na 80 (117)
T 2i7k_A 8 PLQEALNQLMRQLQRK------DPSAFFSFPVTDFIAPGYSMI-IKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNA 80 (117)
T ss_dssp HHHHHHHHHHHHHHTS------SGGGTSSSCCCTTTSSSHHHH-CSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC------cccHHhcCCCCccccCCHHHH-hCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 4578999999998875 457889999999999999999 999999999999999999999999999999999999
Q ss_pred hhhcCCChHHHHHHHHHHHHHHHHHhhhcCCC
Q 001037 957 MQFYGFSHEVRSEARKVHDLFFDLLKIAFPDT 988 (1179)
Q Consensus 957 ~~y~~~~se~~~~A~~l~~~f~~~~~~~~~~~ 988 (1179)
+.||+++|.+|++|.+|.+.|...++...-.|
T Consensus 81 ~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 112 (117)
T 2i7k_A 81 MIYNKPETIYYKAAKKLLHSGMKILSQERLEH 112 (117)
T ss_dssp HHTSCSSSSHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998776544
No 49
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.76 E-value=1.2e-18 Score=177.84 Aligned_cols=107 Identities=14% Similarity=0.182 Sum_probs=101.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccc--cCCCccccccCCccchHHHHHHhcccCcccHHHHHHHH
Q 001037 872 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRI--ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDV 949 (1179)
Q Consensus 872 ~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~--~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~ 949 (1179)
++++..++..|+.|++.|.+. ..+..|+.++... ++||||.+ |++||||.+|.+||+++.|.++.+|+.||
T Consensus 27 ~r~t~~l~~~~~~il~~l~~~------~~a~~F~~PVd~~~~~~PdY~~i-Ik~PMDL~tI~~kl~~~~Y~s~~ef~~Dv 99 (154)
T 4alg_A 27 GRVTNQLQYLHKVVMKALWKH------QFAWPFRQPVDAVKLGLPDYHKI-IKQPMDMGTIKRRLENNYYWAASECMQDF 99 (154)
T ss_dssp CCCBHHHHHHHHTHHHHHHTS------TTCGGGSSCCCTTTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHhC------cCchhhcCCCChhhccCCCHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHH
Confidence 589999999999999999875 5799999999977 79999999 99999999999999999999999999999
Q ss_pred HHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHhhhc
Q 001037 950 QFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF 985 (1179)
Q Consensus 950 ~lm~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~~ 985 (1179)
.|||.||+.||+++|.+|++|..|.++|...++.+-
T Consensus 100 ~Lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~ 135 (154)
T 4alg_A 100 NTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMP 135 (154)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999998753
No 50
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.76 E-value=1.3e-18 Score=170.82 Aligned_cols=99 Identities=14% Similarity=0.259 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhh
Q 001037 879 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 958 (1179)
Q Consensus 879 ~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~ 958 (1179)
.+.|..|+++|.+ |..+..|..+|++.++||||.+ |++||||.+|.+||+++.|.++.+|..||.|||.||+.
T Consensus 15 ~~~~~~il~~l~~------~~~a~~F~~pvd~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 87 (121)
T 1e6i_A 15 DAAIQNILTELQN------HAAAWPFLQPVNKEEVPDYYDF-IKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRM 87 (121)
T ss_dssp HHHHHHHHHHHHH------STTCGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc------CCCchhhCCCCChhhCcCHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 5789999999986 5689999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHhhh
Q 001037 959 FYGFSHEVRSEARKVHDLFFDLLKIA 984 (1179)
Q Consensus 959 y~~~~se~~~~A~~l~~~f~~~~~~~ 984 (1179)
||+++|.+|++|..|.++|...++..
T Consensus 88 yN~~~s~i~~~A~~L~~~f~~~~~~~ 113 (121)
T 1e6i_A 88 YNGENTSYYKYANRLEKFFNNKVKEI 113 (121)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999864
No 51
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.75 E-value=1.3e-18 Score=170.50 Aligned_cols=109 Identities=17% Similarity=0.214 Sum_probs=99.9
Q ss_pred CCcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhccccc--CCCccccccCCccchHHHHHHhcccCcccHHHHHHHHH
Q 001037 873 KMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIE--TSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQ 950 (1179)
Q Consensus 873 ~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~--~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~ 950 (1179)
.+...+.+.|..|+.+|... .++.++..|..++.... +||||.+ |.+||||.+|.+||+++.|.++.+|+.||.
T Consensus 5 ~~~~~~l~~c~~il~~l~~~---~~~~~a~~F~~pvd~~~~~~pdY~~i-I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~ 80 (120)
T 3jvl_A 5 SKISEQLKCCSGILKEMFAK---KHAAYAWPFYKPVDVEALGLHDYCDI-IKHPMDMSTIKSKLESREYRDAQEFGADVR 80 (120)
T ss_dssp CSSCHHHHHHHHHHHHHTSG---GGHHHHGGGSSCCCHHHHTCTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhC---cCccccchhcCCCCchhcCCCCHHHH-cCCCCCHHHHHHHHccCCCCCHHHHHHHHH
Confidence 34556789999999888764 44678899999999999 9999999 999999999999999999999999999999
Q ss_pred HHHhhhhhhcCCChHHHHHHHHHHHHHHHHHhhhc
Q 001037 951 FMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF 985 (1179)
Q Consensus 951 lm~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~~ 985 (1179)
|||.||+.||+++|.+|++|..|.++|...++.+-
T Consensus 81 li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~p 115 (120)
T 3jvl_A 81 LMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMP 115 (120)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999998753
No 52
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.75 E-value=1.9e-18 Score=168.33 Aligned_cols=99 Identities=12% Similarity=0.139 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhh
Q 001037 878 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 957 (1179)
Q Consensus 878 ~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~ 957 (1179)
..++|..|++.|..+.+ +..|..+|...++||||.+ |.+||||.+|.+||+++.|.++.+|+.||.|||.||+
T Consensus 17 ~~~~~~~il~~l~~~~~------s~~F~~pv~~~~~pdY~~~-I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 89 (116)
T 3nxb_A 17 DFTAMYKVLDVVKAHKD------SWPFLEPVDESYAPNYYQI-IKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCR 89 (116)
T ss_dssp HHHHHHHHHHHHHHSTT------CGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC------cHhhcCcCChhhccChHHH-cCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 57899999999998765 6899999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHhh
Q 001037 958 QFYGFSHEVRSEARKVHDLFFDLLKI 983 (1179)
Q Consensus 958 ~y~~~~se~~~~A~~l~~~f~~~~~~ 983 (1179)
.||+++|.+|++|..|.++|...|++
T Consensus 90 ~yN~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 90 KYNGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998875
No 53
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.75 E-value=2e-18 Score=184.43 Aligned_cols=112 Identities=21% Similarity=0.321 Sum_probs=105.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcc---cCcccHHHHHH
Q 001037 871 SAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR---LEYNGVMELVS 947 (1179)
Q Consensus 871 ~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~---~~Y~~v~~~~~ 947 (1179)
...|++..+++|+.|+.+|..+ ..+..|+.++.+ ++||||.+ |++||||.+|.+||++ +.|.++.+|+.
T Consensus 75 ~~~ls~~~~~~c~~il~~l~~~------~~s~~F~~Pv~~-~~pdY~~i-Ik~PmdL~tI~~kl~~~~~~~Y~s~~~f~~ 146 (207)
T 3u5n_A 75 AQGLSPVDQRKCERLLLYLYCH------ELSIEFQEPVPA-SIPNYYKI-IKKPMDLSTVKKKLQKKHSQHYQIPDDFVA 146 (207)
T ss_dssp CCSSCHHHHHHHHHHHHHHHTS------TTCGGGSSCCCT-TSTTHHHH-CSSCCCHHHHHHHHSTTSTTCCSSHHHHHH
T ss_pred hhcccHHHHHHHHHHHHHHHhc------cchhhhhccCCh-hhccHhHH-hCCccCHHHHHHHHhcccCCCcCCHHHHHH
Confidence 3579999999999999999964 567889996655 99999999 9999999999999997 79999999999
Q ss_pred HHHHHHhhhhhhcC-----------------CChHHHHHHHHHHHHHHHHHhhhcCCCch
Q 001037 948 DVQFMLKGAMQFYG-----------------FSHEVRSEARKVHDLFFDLLKIAFPDTDF 990 (1179)
Q Consensus 948 d~~lm~~na~~y~~-----------------~~se~~~~A~~l~~~f~~~~~~~~~~~~~ 990 (1179)
||.|||.||+.||+ .+|+++++|..|..+|...|+..||+..|
T Consensus 147 Dv~li~~Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~~~f 206 (207)
T 3u5n_A 147 DVRLIFKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSDRTF 206 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999999999999 99999999999999999999999999988
No 54
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.73 E-value=6.4e-18 Score=177.31 Aligned_cols=107 Identities=21% Similarity=0.368 Sum_probs=100.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcc--cCcccHHHHHHHH
Q 001037 872 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR--LEYNGVMELVSDV 949 (1179)
Q Consensus 872 ~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~--~~Y~~v~~~~~d~ 949 (1179)
..|++..+++|+.|+.+|..+. .+..|.+++. .++||||.+ |++||||.+|.+||++ +.|.++.+|+.||
T Consensus 76 ~~l~~~~~~~c~~il~~l~~~~------~s~~F~~Pv~-~~~pdY~~i-Ik~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv 147 (184)
T 3o36_A 76 VKLTPIDKRKCERLLLFLYCHE------MSLAFQDPVP-LTVPDYYKI-IKNPMDLSTIKKRLQEDYSMYSKPEDFVADF 147 (184)
T ss_dssp CCCCHHHHHHHHHHHHHHHHST------TCHHHHSCCC-TTSTTHHHH-CSSCCCHHHHHHHHHSTTCSCCSHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhch------hhhhhccccc-cCCCchhhh-cCCCCCHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 4699999999999999999864 5788998666 579999999 9999999999999998 7999999999999
Q ss_pred HHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHhhhcC
Q 001037 950 QFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 986 (1179)
Q Consensus 950 ~lm~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~~~ 986 (1179)
.|||.||+.||+++|++|++|..|.++|...|+..||
T Consensus 148 ~li~~Na~~yN~~~s~v~~~a~~L~~~f~~~~~~~~P 184 (184)
T 3o36_A 148 RLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYP 184 (184)
T ss_dssp HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999998
No 55
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=1.5e-16 Score=193.02 Aligned_cols=107 Identities=16% Similarity=0.281 Sum_probs=96.8
Q ss_pred hcCCeEEEeehhHHHHHHHHHHHHHc---CCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccce
Q 001037 281 RTGHRVLLFSTMTKLLDILEEYLQWR---QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT 357 (1179)
Q Consensus 281 ~~g~KVLIFSqft~~ldiLe~~L~~~---Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~Adt 357 (1179)
..+.++||||.....++.+...|... ++.+..++|+++..+|..+++.|+++ .+. +|++|.++++|||++.+++
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g--~~~-vLVaT~~~~~GiDip~v~~ 362 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD--ESG-ILVCTDVGARGMDFPNVHE 362 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC--SSE-EEEECGGGTSSCCCTTCCE
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcC--CCe-EEEEcchhhcCCCcccCCE
Confidence 35789999999999999999999987 99999999999999999999999963 444 5788999999999999999
Q ss_pred eeecCCCCCcchHHHHhhcccccCCcceEEEEE
Q 001037 358 VIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 390 (1179)
Q Consensus 358 VIi~D~pWNP~~~eQAiGRIhRIGQkkeV~Vyr 390 (1179)
||+||+|+++..+.|++||++|.|+...+.+++
T Consensus 363 VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~ 395 (579)
T 3sqw_A 363 VLQIGVPSELANYIHRIGRTARSGKEGSSVLFI 395 (579)
T ss_dssp EEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEE
T ss_pred EEEcCCCCCHHHhhhhccccccCCCCceEEEEE
Confidence 999999999999999999999999876665544
No 56
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.73 E-value=5e-18 Score=167.17 Aligned_cols=100 Identities=19% Similarity=0.226 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhh
Q 001037 878 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 957 (1179)
Q Consensus 878 ~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~ 957 (1179)
.+..|..|++.|.+.. .+..|..+|.+.++||||++ |.+||||.+|.+||+++.|.++.+|+.||.|||.||+
T Consensus 14 ~~~~l~~il~~l~~~~------~~~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 86 (123)
T 3hme_A 14 IQQLLEHFLRQLQRKD------PHGFFAFPVTDAIAPGYSMI-IKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAM 86 (123)
T ss_dssp HHHHHHHHHHHHHTTC------TTCSSSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC------ccHhhcCCCChhhccCHHHH-CCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Confidence 5779999999998843 46689999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHhhh
Q 001037 958 QFYGFSHEVRSEARKVHDLFFDLLKIA 984 (1179)
Q Consensus 958 ~y~~~~se~~~~A~~l~~~f~~~~~~~ 984 (1179)
.||+++|.+|++|.+|.+.|...|..+
T Consensus 87 ~yN~~~s~~~~~A~~L~~~~~~~~~~~ 113 (123)
T 3hme_A 87 TYNRPDTVYYKLAKKILHAGFKMMSKE 113 (123)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTCHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988643
No 57
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.73 E-value=3.7e-18 Score=170.68 Aligned_cols=105 Identities=14% Similarity=0.248 Sum_probs=98.2
Q ss_pred CCcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHH
Q 001037 873 KMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 952 (1179)
Q Consensus 873 ~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm 952 (1179)
++++ .+..|..|+++|..+ ..+..|..+|.+.++||||.+ |.+||||.+|.+||+++.|.++.+|+.||.||
T Consensus 10 ~~~~-l~~~l~~il~~l~~~------~~~~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li 81 (135)
T 3rcw_A 10 RLTP-LTVLLRSVLDQLQDK------DPARIFAQPVSLKEVPDYLDH-IKHPMDFATMRKRLEAQGYKNLHEFEEDFDLI 81 (135)
T ss_dssp CCCH-HHHHHHHHHHHHHHT------CTTCSSSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred cchH-HHHHHHHHHHHHHhC------CcchhhcCCCChhhcCCHHHH-hCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3444 789999999999984 458899999999999999999 99999999999999999999999999999999
Q ss_pred HhhhhhhcCCChHHHHHHHHHHHHHHHHHhhhc
Q 001037 953 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF 985 (1179)
Q Consensus 953 ~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~~ 985 (1179)
|.||+.||+++|.+|++|..|.++|...++.+-
T Consensus 82 ~~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~~ 114 (135)
T 3rcw_A 82 IDNCMKYNARDTVFYRAAVRLRDQGGVVLRQAR 114 (135)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998773
No 58
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.73 E-value=9.2e-18 Score=173.42 Aligned_cols=116 Identities=15% Similarity=0.168 Sum_probs=98.8
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcc--cccCCCccccccCCccchHHHHHHhcccCcccHHHH
Q 001037 868 SNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWK--RIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMEL 945 (1179)
Q Consensus 868 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~--r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~ 945 (1179)
-...+++....++.|..|+.+|..+ ..+..|..++. +.++||||.+ |++||||.+|.+||+++.|.++.+|
T Consensus 12 ~~~~~p~~~~~~~~~~~il~~L~~~------~~s~~F~~PVd~~~~~~pdY~~i-Ik~PmDL~tI~~kL~~~~Y~s~~ef 84 (166)
T 3fkm_X 12 ENLYFQGNKQWYLLANQLILSLSKY------EGGHIFEKLVDAKKQNCPDYYDV-IKNPMSFSCIKTKLKKGQYAYPSEF 84 (166)
T ss_dssp -----CTTHHHHHHHHHHHHHHTTS------TTGGGGSSCCC-----CCCGGGC-CSSCCCHHHHHHHHHHTCCCSHHHH
T ss_pred CcCCCcccHHHHHHHHHHHHHHHhC------CCChhhcCCCChhhccCCCHHHh-cCCCCCHHHHHHHHcCCCCCCHHHH
Confidence 3445688999999999999999874 45779999955 7789999999 9999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHhhhcCCCchH
Q 001037 946 VSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFR 991 (1179)
Q Consensus 946 ~~d~~lm~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~~~~~~~~ 991 (1179)
+.||.|||.||+.||+++|.+|++|..|.++|...|+.+- -.+|.
T Consensus 85 ~~Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~~-~~~~~ 129 (166)
T 3fkm_X 85 VKDVQLIFDNCSLYNTSNSVVAITGKNIETYFNNQLIVMG-YNNFI 129 (166)
T ss_dssp HHHHHHHHHHHHHSSCTTSHHHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcc-ccccc
Confidence 9999999999999999999999999999999999998743 33444
No 59
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.72 E-value=5.3e-17 Score=211.37 Aligned_cols=105 Identities=16% Similarity=0.130 Sum_probs=94.2
Q ss_pred hcCCeEEEeehhHHHHHHHHHHHHHc--CCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCccccee
Q 001037 281 RTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 358 (1179)
Q Consensus 281 ~~g~KVLIFSqft~~ldiLe~~L~~~--Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtV 358 (1179)
..+.+++|||+....++.+.+.|... ++.+..++|.++..+|++++.+|+++ .+. +|++|.++++|||++.+++|
T Consensus 810 ~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g--~~~-VLVaT~v~e~GiDip~v~~V 886 (1151)
T 2eyq_A 810 LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ--RFN-VLVCTTIIETGIDIPTANTI 886 (1151)
T ss_dssp TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTT--SCC-EEEESSTTGGGSCCTTEEEE
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcC--CCc-EEEECCcceeeecccCCcEE
Confidence 35789999999999999999999987 88999999999999999999999954 444 57888999999999999999
Q ss_pred eecCC-CCCcchHHHHhhcccccCCcceEEE
Q 001037 359 IIYDP-DPNPKNEEQAVARAHRIGQKREVKV 388 (1179)
Q Consensus 359 Ii~D~-pWNP~~~eQAiGRIhRIGQkkeV~V 388 (1179)
|++++ .|++..+.|++||++|.|+...|.+
T Consensus 887 Ii~~~~~~~l~~l~Qr~GRvgR~g~~g~~~l 917 (1151)
T 2eyq_A 887 IIERADHFGLAQLHQLRGRVGRSHHQAYAWL 917 (1151)
T ss_dssp EETTTTSSCHHHHHHHHTTCCBTTBCEEEEE
T ss_pred EEeCCCCCCHHHHHHHHhccCcCCCceEEEE
Confidence 99998 6899999999999999998766543
No 60
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.72 E-value=2e-16 Score=190.59 Aligned_cols=108 Identities=16% Similarity=0.276 Sum_probs=97.0
Q ss_pred hcCCeEEEeehhHHHHHHHHHHHHHc---CCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccce
Q 001037 281 RTGHRVLLFSTMTKLLDILEEYLQWR---QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT 357 (1179)
Q Consensus 281 ~~g~KVLIFSqft~~ldiLe~~L~~~---Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~Adt 357 (1179)
..+.++||||.....++.+...|... ++.+..++|+++..+|..+++.|+++ .+. +|++|.++++|||++.+++
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g--~~~-vLvaT~~~~~GiDip~v~~ 413 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD--ESG-ILVCTDVGARGMDFPNVHE 413 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC--SSE-EEEECGGGTSSCCCTTCCE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcC--CCC-EEEEcchhhcCCCcccCCE
Confidence 35789999999999999999999987 99999999999999999999999964 444 5888999999999999999
Q ss_pred eeecCCCCCcchHHHHhhcccccCCcceEEEEEE
Q 001037 358 VIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 391 (1179)
Q Consensus 358 VIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrL 391 (1179)
||+||+|+++..+.|++||++|.|+...+.+++.
T Consensus 414 VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~ 447 (563)
T 3i5x_A 414 VLQIGVPSELANYIHRIGRTARSGKEGSSVLFIC 447 (563)
T ss_dssp EEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEE
T ss_pred EEEECCCCchhhhhhhcCccccCCCCceEEEEEc
Confidence 9999999999999999999999998766654443
No 61
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.72 E-value=6e-19 Score=203.01 Aligned_cols=92 Identities=16% Similarity=0.289 Sum_probs=88.0
Q ss_pred ccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHH
Q 001037 895 KEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVH 974 (1179)
Q Consensus 895 ~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~y~~~~se~~~~A~~l~ 974 (1179)
.+||.++..|+.+|.+.++||||++ |++||||.+|.+||+++.|.++.+|+.||.|||.||+.||+++|.+|++|..|+
T Consensus 225 ~~~~~~s~~F~~pvd~~~~PdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~ 303 (361)
T 2r10_A 225 DDKVKLSEPFMELVDKDELPEYYEI-VHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLT 303 (361)
T ss_dssp CCSSCTTGGGSSCCCTTTCTHHHHH-CSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHH
T ss_pred ccCCcchhcccCCCChhhcccHHHH-hcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 3689999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh-cCC
Q 001037 975 DLFFDLLKIA-FPD 987 (1179)
Q Consensus 975 ~~f~~~~~~~-~~~ 987 (1179)
++|...|+.. +|.
T Consensus 304 ~~f~~~~~~~~~p~ 317 (361)
T 2r10_A 304 NYFNYLIQKEFFPE 317 (361)
T ss_dssp HHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhcCCc
Confidence 9999999975 453
No 62
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.72 E-value=6.7e-18 Score=175.46 Aligned_cols=107 Identities=18% Similarity=0.218 Sum_probs=101.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHH
Q 001037 871 SAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQ 950 (1179)
Q Consensus 871 ~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~ 950 (1179)
...|++..++.|+.|+++|.. |.++..|+.+|+..++||||++ |++||||.+|.+||+++.|.++.+|+.||.
T Consensus 66 ~~~l~~~~~~~l~~il~~l~~------~~~~~~F~~pv~~~~~pdY~~~-I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~ 138 (174)
T 2ri7_A 66 LTPLTEKDYEGLKRVLRSLQA------HKMAWPFLEPVDPNDAPDYYGV-IKEPMDLATMEERVQRRYYEKLTEFVADMT 138 (174)
T ss_dssp TSBCCHHHHHHHHHHHHHHHT------SGGGTTTSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCCCBHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHh------hhhhhhhhcCCCcccCCchHHH-hCCcCCHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 347999999999999999986 4578899999999999999999 999999999999999999999999999999
Q ss_pred HHHhhhhhhcCCChHHHHHHHHHHHHHHHHHhhh
Q 001037 951 FMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 984 (1179)
Q Consensus 951 lm~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~ 984 (1179)
|||.||+.||+++|.+|++|..|.++|.+.|+..
T Consensus 139 li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 139 KIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998753
No 63
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.72 E-value=9.5e-18 Score=164.18 Aligned_cols=106 Identities=16% Similarity=0.200 Sum_probs=98.4
Q ss_pred cHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccc--cCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHH
Q 001037 875 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRI--ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 952 (1179)
Q Consensus 875 ~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~--~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm 952 (1179)
++.+.+.|..++.+|.+. +..+..|..++... +.||||.+ |.+||||.+|.+||+++.|.++.+|+.||.||
T Consensus 9 ~~el~~~l~~~l~~l~~~-----~~~s~~F~~pv~~~~~~~pdY~~i-I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li 82 (119)
T 3p1f_A 9 PEELRQALMPTLEALYRQ-----DPESLPFRQPVDPQLLGIPDYFDI-VKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLM 82 (119)
T ss_dssp HHHHHHHHHHHHHHHHTC-----TTTTGGGSSCCCHHHHTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-----CCCCchhcCCCCchhccCCCHHHH-hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 467888999999998773 46788999999987 89999999 99999999999999999999999999999999
Q ss_pred HhhhhhhcCCChHHHHHHHHHHHHHHHHHhhhcC
Q 001037 953 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 986 (1179)
Q Consensus 953 ~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~~~ 986 (1179)
|.||+.||+++|.+|++|.+|.++|...++..+.
T Consensus 83 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 116 (119)
T 3p1f_A 83 FNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQ 116 (119)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988763
No 64
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.70 E-value=8.8e-17 Score=164.02 Aligned_cols=121 Identities=20% Similarity=0.316 Sum_probs=108.9
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeeh
Q 001037 264 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 343 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST 343 (1179)
....|+..|..+|... .+.++||||+....++.|...|...|+.+..++|+++..+|..+++.|+++ .+. +|++|
T Consensus 18 ~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g--~~~-vlv~T 92 (163)
T 2hjv_A 18 REENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG--EYR-YLVAT 92 (163)
T ss_dssp CGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT--SCS-EEEEC
T ss_pred ChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC--CCe-EEEEC
Confidence 3457999999999864 577999999999999999999999999999999999999999999999954 445 57788
Q ss_pred hhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEE
Q 001037 344 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 389 (1179)
Q Consensus 344 ~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~Vy 389 (1179)
+++++|||++.+++||+||+|||+..+.|++||++|.|+...+.++
T Consensus 93 ~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~ 138 (163)
T 2hjv_A 93 DVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISF 138 (163)
T ss_dssp GGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEE
T ss_pred ChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEE
Confidence 9999999999999999999999999999999999999988766433
No 65
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.70 E-value=4.4e-17 Score=171.69 Aligned_cols=109 Identities=27% Similarity=0.304 Sum_probs=102.1
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccC--CccchHHHHHHhccc---CcccHHHHH
Q 001037 872 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGN--NILDLRKIDQRVDRL---EYNGVMELV 946 (1179)
Q Consensus 872 ~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~--~pidl~~i~qr~~~~---~Y~~v~~~~ 946 (1179)
..|++..++.|..|+.+|.. |..+-.|.+++. |+||.+ |+ +||||.+|.+||+++ .|.++.+|+
T Consensus 71 ~~m~~~~~~~c~~iL~~l~~------~~~s~pF~~pV~----~~Yy~i-Ik~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~ 139 (189)
T 2ro1_A 71 AKLSPANQRKCERVLLALFC------HEPCRPLHQLAT----DSTFSL-DQPGGTLDLTLIRARLQEKLSPPYSSPQEFA 139 (189)
T ss_dssp CSSCHHHHHHHHHHHHHHHH------STTHHHHHSCSC----CTTCSS-SCSSCCCCHHHHHHHHHTSSSSCCSCHHHHH
T ss_pred cCCCHHHHHHHHHHHhhccc------CccchhhcCCCC----hhhhcc-ccCCCcccHHHHHHHHhcCCCcccCCHHHHH
Confidence 47999999999999999996 558889999987 899999 98 899999999999999 999999999
Q ss_pred HHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHhhhcCCCchHH
Q 001037 947 SDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFRE 992 (1179)
Q Consensus 947 ~d~~lm~~na~~y~~~~se~~~~A~~l~~~f~~~~~~~~~~~~~~~ 992 (1179)
+||.|||+||+.||+ ++++|+.|.+|.++|...++..||+..|-.
T Consensus 140 ~Dv~Lif~N~~~yN~-~s~~~~~a~~L~~~Fe~~~~~~~~~~~~~~ 184 (189)
T 2ro1_A 140 QDVGRMFKQFNKLTE-DKADVQSIIGLQRFFETRMNEAFGDTKFSA 184 (189)
T ss_dssp HHHHHHHHHHHHHCC-SSCSSHHHHHHHHHHHHHHHHHTTTSCSCT
T ss_pred HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHhcCcccCcc
Confidence 999999999999994 889999999999999999999999988853
No 66
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.70 E-value=7e-17 Score=166.61 Aligned_cols=120 Identities=22% Similarity=0.216 Sum_probs=108.4
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehh
Q 001037 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 344 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~ 344 (1179)
...|+..|..+|... .+.++||||+....++.|...|...|+.+..++|+++..+|..+++.|+++ .+. +|++|+
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g--~~~-vLvaT~ 89 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF--QRR-ILVATN 89 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT--SCS-EEEESS
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC--CCc-EEEECC
Confidence 456999999999864 568999999999999999999999999999999999999999999999954 445 477889
Q ss_pred hhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEE
Q 001037 345 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 389 (1179)
Q Consensus 345 AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~Vy 389 (1179)
++++|||++.+++||+||+|||+..+.|++||++|.|+...+.++
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~ 134 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 134 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEE
T ss_pred chhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEE
Confidence 999999999999999999999999999999999999997765433
No 67
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.70 E-value=1.1e-17 Score=200.22 Aligned_cols=106 Identities=15% Similarity=0.254 Sum_probs=76.3
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeec
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY 361 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~ 361 (1179)
.+.++||||+....+..+...|...++.+..++|+++..+|..+++.|+++ .+. +|++|.++++|+|++.+++||+|
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g--~~~-VLVaT~~l~~GiDip~v~~VI~~ 432 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVG--TSK-VLVTTNVIARGIDVSQVNLVVNY 432 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSS--SCC-CCEECC-----CCCTTCCEEEC-
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCC--CCe-EEEeCChhhcCCCccCCCEEEEE
Confidence 467999999999999999999999999999999999999999999999854 444 58888999999999999999999
Q ss_pred CCC------CCcchHHHHhhcccccCCcceEEEEE
Q 001037 362 DPD------PNPKNEEQAVARAHRIGQKREVKVIY 390 (1179)
Q Consensus 362 D~p------WNP~~~eQAiGRIhRIGQkkeV~Vyr 390 (1179)
|++ +++..+.|++||++|.|+...+.++.
T Consensus 433 ~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~ 467 (508)
T 3fho_A 433 DMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFV 467 (508)
T ss_dssp ---CC-----CTHHHHHTTSCCC-----CEEEEEE
T ss_pred CCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEE
Confidence 999 78999999999999999877765553
No 68
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.69 E-value=3.6e-18 Score=188.98 Aligned_cols=105 Identities=12% Similarity=0.160 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhh
Q 001037 879 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 958 (1179)
Q Consensus 879 ~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~ 958 (1179)
+..|..++..+...+ --.+..+..|+.+|.+.++||||.+ |++||||.+|.+||+++.|.++.+|+.||.|||+||+.
T Consensus 134 ~~~~~~il~~i~~~~-l~~~~~~~~F~~pv~~~~~pdY~~i-Ik~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~ 211 (265)
T 3uv5_A 134 QVAFSFILDNIVTQK-MMAVPDSWPFHHPVNKKFVPDYYKV-IVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVK 211 (265)
T ss_dssp HHHHHHHHHHHHHHT-TTTSTTCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH-HHhhhhhHHHhCCCChhHhCcHHHH-hCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 455666665543321 2346678899999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHhhhc
Q 001037 959 FYGFSHEVRSEARKVHDLFFDLLKIAF 985 (1179)
Q Consensus 959 y~~~~se~~~~A~~l~~~f~~~~~~~~ 985 (1179)
||+++|.+|++|..|.++|...++..-
T Consensus 212 yN~~~s~~~~~A~~l~~~~~~~~~~~~ 238 (265)
T 3uv5_A 212 YNGPESQYTKTAQEIVNVCYQTLTEYD 238 (265)
T ss_dssp HTCTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998753
No 69
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.69 E-value=4.4e-17 Score=166.99 Aligned_cols=108 Identities=13% Similarity=0.149 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhh
Q 001037 876 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 955 (1179)
Q Consensus 876 ~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~n 955 (1179)
+.-+..|..++..+...+ -.++..+..|..+|.+.++||||.+ |++||||.+|.+||+++.|.++.+|+.||.|||.|
T Consensus 24 ~d~~~~l~~iL~~i~~~k-l~~~~~s~~F~~PVd~~~~PdY~~i-Ik~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N 101 (158)
T 3uv4_A 24 DDDQVAFSFILDNIVTQK-MMAVPDSWPFHHPVNKKFVPDYYKV-IVNPMDLETIRKNISKHKYQSRESFLDDVNLILAN 101 (158)
T ss_dssp SHHHHHHHHHHHHHHHHT-TTTSTTCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHH-HHcCCCchhhcCcCChhhcccHHHH-cCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 344899999998887654 3457889999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCChHHHHHHHHHHHHHHHHHhhhc
Q 001037 956 AMQFYGFSHEVRSEARKVHDLFFDLLKIAF 985 (1179)
Q Consensus 956 a~~y~~~~se~~~~A~~l~~~f~~~~~~~~ 985 (1179)
|+.||+++|.+|++|..|.++|...|+..-
T Consensus 102 a~~yN~~~s~i~~~A~~L~~~~~~~l~e~~ 131 (158)
T 3uv4_A 102 SVKYNGPESQYTKTAQEIVNVCYQTLTEYD 131 (158)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998753
No 70
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=5.7e-17 Score=161.26 Aligned_cols=109 Identities=16% Similarity=0.267 Sum_probs=99.1
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHH
Q 001037 866 GSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMEL 945 (1179)
Q Consensus 866 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~ 945 (1179)
||+..-+.+...+...|..|+++|.... .+..|+.+ +||||.+ |++||||.+|.+||+++.|.++.+|
T Consensus 1 ~~~~~e~~~~~~L~~~~~~il~~l~~~~------~~~~F~~P-----~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~~f 68 (131)
T 2dkw_A 1 GSSGSSGNTLRELRLFLRDVTKRLATDK------RFNIFSKP-----VSDYLEV-IKEPMDLSTVITKIDKHNYLTAKDF 68 (131)
T ss_dssp CCSSCTTHHHHHHHHHHHHHHHHHHHSG------GGCTTSSC-----CSSCTTS-CSSCCCHHHHHHHHHTTCCCSSHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhCc------cchhhcCc-----CccHHhH-cCCCcCHHHHHHHHcCCCCCCHHHH
Confidence 6777777888999999999999998754 47789884 9999999 9999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcCCChH----HHHHHHHHHHHHHHHHhhhcC
Q 001037 946 VSDVQFMLKGAMQFYGFSHE----VRSEARKVHDLFFDLLKIAFP 986 (1179)
Q Consensus 946 ~~d~~lm~~na~~y~~~~se----~~~~A~~l~~~f~~~~~~~~~ 986 (1179)
..||.|||.||+.||+++|. +|.+|++|++.|...|+..+.
T Consensus 69 ~~D~~Li~~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~l~~~l~ 113 (131)
T 2dkw_A 69 LKDIDLICSNALEYNPDKDPGDKIIRHRACTLKDTAHAIIAAELD 113 (131)
T ss_dssp HHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999995 589999999999999976654
No 71
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.68 E-value=9.2e-17 Score=167.88 Aligned_cols=121 Identities=25% Similarity=0.324 Sum_probs=94.5
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeeh
Q 001037 264 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 343 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST 343 (1179)
..+.|+..|.++|... ..+.++||||+....++.|...|...|+.+..++|+++..+|..+++.|+++ .+. +|++|
T Consensus 28 ~~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g--~~~-vLvaT 103 (185)
T 2jgn_A 28 EESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG--KSP-ILVAT 103 (185)
T ss_dssp CGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT--SSS-EEEEE
T ss_pred CcHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC--CCe-EEEEc
Confidence 3467999999999874 2578999999999999999999999999999999999999999999999954 444 57788
Q ss_pred hhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEE
Q 001037 344 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388 (1179)
Q Consensus 344 ~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~V 388 (1179)
+++++|||++.+++||+||+|||+..+.||+||++|.|++..+.+
T Consensus 104 ~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~ 148 (185)
T 2jgn_A 104 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATS 148 (185)
T ss_dssp C------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEE
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEE
Confidence 999999999999999999999999999999999999998766533
No 72
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.67 E-value=1.5e-17 Score=186.24 Aligned_cols=87 Identities=14% Similarity=0.207 Sum_probs=83.8
Q ss_pred CCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHH
Q 001037 897 GHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDL 976 (1179)
Q Consensus 897 g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~y~~~~se~~~~A~~l~~~ 976 (1179)
.+..+..|+.+|++.++||||.+ |++||||.+|.+||+++.|.++.+|..||.|||+||+.||+++|.+|++|..|+++
T Consensus 184 ~~~~s~~F~~pvd~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~~~ 262 (292)
T 3aad_A 184 AVPDSWPFHHPVNKKFVPDYYKV-IVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNV 262 (292)
T ss_dssp GSTTCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH
T ss_pred cCcchhHHHhcccccccccHHHH-cCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 46788999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q 001037 977 FFDLLKIA 984 (1179)
Q Consensus 977 f~~~~~~~ 984 (1179)
|...|+..
T Consensus 263 ~~~~~~~~ 270 (292)
T 3aad_A 263 CYQTLTEY 270 (292)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 73
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.67 E-value=2.8e-16 Score=160.41 Aligned_cols=117 Identities=21% Similarity=0.308 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhc
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 347 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGg 347 (1179)
|+..|..++... .+.++||||+....++.+...|...++.+..++|+++..+|..+++.|++ +.+. +|++|++++
T Consensus 17 K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~-vlv~T~~~~ 91 (165)
T 1fuk_A 17 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS--GSSR-ILISTDLLA 91 (165)
T ss_dssp HHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--TSCS-EEEEEGGGT
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHc--CCCE-EEEEcChhh
Confidence 999999999874 57899999999999999999999999999999999999999999999995 3445 477889999
Q ss_pred cCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEE
Q 001037 348 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 389 (1179)
Q Consensus 348 eGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~Vy 389 (1179)
+|+|++.+++||+||+|||+..+.|++||++|.|+...+.++
T Consensus 92 ~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~ 133 (165)
T 1fuk_A 92 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINF 133 (165)
T ss_dssp TTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEE
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEE
Confidence 999999999999999999999999999999999987766433
No 74
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.67 E-value=1.9e-16 Score=157.31 Aligned_cols=108 Identities=19% Similarity=0.285 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhh
Q 001037 878 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 957 (1179)
Q Consensus 878 ~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~ 957 (1179)
....|+.+++.|.. +..+..|..+|...++||||.+ |++||||.+|.+||+++.|.++.+|+.||.|||.||+
T Consensus 11 l~~~l~~il~~l~~------~~~~~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 83 (130)
T 3dai_A 11 LRIFLRNVTHRLAI------DKRFRVFTKPVDPDEVPDYVTV-IKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNAL 83 (130)
T ss_dssp HHHHHHHHHHHHHT------SGGGGGGSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc------CCccHhhcCCCChhhcCCHHHH-cCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 44556666666654 4458999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCChHH----HHHHHHHHHHHHHHHhhhcCCCchHHh
Q 001037 958 QFYGFSHEV----RSEARKVHDLFFDLLKIAFPDTDFREA 993 (1179)
Q Consensus 958 ~y~~~~se~----~~~A~~l~~~f~~~~~~~~~~~~~~~~ 993 (1179)
.||+++|.+ +.+|+.|++.|...++..+.. +|...
T Consensus 84 ~yN~~~s~~~~~i~~~A~~L~~~~~~~i~~el~~-~~~~~ 122 (130)
T 3dai_A 84 EYNPDRDPGDRLIRHRACALRDTAYAIIKEELDE-DFEQL 122 (130)
T ss_dssp HHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHSCH-HHHHH
T ss_pred HHCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHH
Confidence 999998866 899999999999999866544 66543
No 75
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.67 E-value=3.7e-17 Score=193.25 Aligned_cols=105 Identities=17% Similarity=0.250 Sum_probs=0.0
Q ss_pred CCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecC
Q 001037 283 GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD 362 (1179)
Q Consensus 283 g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D 362 (1179)
+.++||||+....++.+...|...++.+..++|+++..+|..+++.|+++ .+. +|++|.++++|||++.+++||+||
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g--~~~-iLv~T~~~~~GlDip~v~~VI~~d 409 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG--KEK-VLVTTNVCARGIDVEQVSVVINFD 409 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcC--CCc-EEEEccccccCCccccCCEEEEec
Confidence 46899999999999999999999999999999999999999999999954 444 588899999999999999999999
Q ss_pred CCCCc------chHHHHhhcccccCCcceEEEEE
Q 001037 363 PDPNP------KNEEQAVARAHRIGQKREVKVIY 390 (1179)
Q Consensus 363 ~pWNP------~~~eQAiGRIhRIGQkkeV~Vyr 390 (1179)
+||++ ..+.|++||++|.|+...+.+++
T Consensus 410 ~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~ 443 (479)
T 3fmp_B 410 LPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 443 (479)
T ss_dssp ----------------------------------
T ss_pred CCCCCccCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 99876 68999999999999876665443
No 76
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=165.74 Aligned_cols=118 Identities=25% Similarity=0.301 Sum_probs=102.6
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehh
Q 001037 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 344 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~ 344 (1179)
...|+..|.++|.. .+.++||||+....++.|...|...|+.+..++|+++..+|..+++.|+++ .+. +|++|+
T Consensus 39 ~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g--~~~-vLvaT~ 112 (191)
T 2p6n_A 39 EEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG--KKD-VLVATD 112 (191)
T ss_dssp GGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHT--SCS-EEEECH
T ss_pred hHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC--CCE-EEEEcC
Confidence 34688888777764 467999999999999999999999999999999999999999999999964 444 578889
Q ss_pred hhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEE
Q 001037 345 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388 (1179)
Q Consensus 345 AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~V 388 (1179)
++++|||++.+++||+||+|||+..+.||+||++|.|++..+.+
T Consensus 113 ~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~ 156 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATT 156 (191)
T ss_dssp HHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEE
T ss_pred chhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEE
Confidence 99999999999999999999999999999999999999876543
No 77
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.62 E-value=2e-16 Score=198.08 Aligned_cols=113 Identities=18% Similarity=0.262 Sum_probs=88.7
Q ss_pred HHHHHHhhcCCeEEEeehhH--------HHHHHHHHHHHH---cCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeee
Q 001037 274 RILIKLQRTGHRVLLFSTMT--------KLLDILEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 342 (1179)
Q Consensus 274 ~IL~el~~~g~KVLIFSqft--------~~ldiLe~~L~~---~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlS 342 (1179)
..+.+....+.+++|||... ..++.+.+.|.. .++.+..++|+++.++|..+++.|+++ .+. +|++
T Consensus 569 ~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G--~~~-ILVa 645 (780)
T 1gm5_A 569 EFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEG--RYD-ILVS 645 (780)
T ss_dssp HHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTT--SSS-BCCC
T ss_pred HHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCC--CCe-EEEE
Confidence 33333445567778887644 335667777776 478899999999999999999999954 444 5888
Q ss_pred hhhhccCCCCcccceeeecCCCC-CcchHHHHhhcccccCCcceEEEE
Q 001037 343 IRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVKVI 389 (1179)
Q Consensus 343 T~AGgeGLNLQ~AdtVIi~D~pW-NP~~~eQAiGRIhRIGQkkeV~Vy 389 (1179)
|.++++|+|++.+++||++|+++ +...+.|++||++|.|+...|.++
T Consensus 646 T~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill 693 (780)
T 1gm5_A 646 TTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLV 693 (780)
T ss_dssp SSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECC
T ss_pred CCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEE
Confidence 99999999999999999999985 789999999999999988776544
No 78
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=156.46 Aligned_cols=120 Identities=19% Similarity=0.251 Sum_probs=100.8
Q ss_pred CHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhh
Q 001037 267 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 346 (1179)
Q Consensus 267 gKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AG 346 (1179)
.|+..|..++..+ .+.++||||+....++.|...|...|+.+..++|+++..+|..+++.|+++ .+. +|++|+++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g--~~~-vLvaT~~~ 94 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG--KEK-VLITTNVC 94 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT--SCS-EEEECCSC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC--CCe-EEEEecch
Confidence 3888888887654 467999999999999999999999999999999999999999999999954 445 57788999
Q ss_pred ccCCCCcccceeeecCCC------CCcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 347 GRGLNLQSADTVIIYDPD------PNPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 347 geGLNLQ~AdtVIi~D~p------WNP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
++|||++.+++||+||+| +++..+.||+||++|.|+...+ +.|++
T Consensus 95 ~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~--~~~~~ 145 (175)
T 2rb4_A 95 ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLA--FNMIE 145 (175)
T ss_dssp CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEE--EEEEC
T ss_pred hcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceE--EEEEc
Confidence 999999999999999999 6678999999999999976543 44444
No 79
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.61 E-value=3.5e-15 Score=159.02 Aligned_cols=120 Identities=20% Similarity=0.295 Sum_probs=106.6
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeeh
Q 001037 264 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 343 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST 343 (1179)
....|+.+|.+++.. ..+.++||||.....++.|...|...|+.+..++|+++..+|..+++.|+++ .++ +|++|
T Consensus 14 ~~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g--~~~-vlvaT 88 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQG--EVR-VLVAT 88 (212)
T ss_dssp CTTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSS--SCC-EEEEC
T ss_pred CHHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCC--CCe-EEEec
Confidence 346799999999975 3578999999999999999999999999999999999999999999999954 445 47788
Q ss_pred hhhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEE
Q 001037 344 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 388 (1179)
Q Consensus 344 ~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~V 388 (1179)
.++++|||++.+++||+||+||++..+.||+||++|.|+...+.+
T Consensus 89 ~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~ 133 (212)
T 3eaq_A 89 DVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVL 133 (212)
T ss_dssp TTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEE
T ss_pred ChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEE
Confidence 999999999999999999999999999999999999998865533
No 80
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.1e-14 Score=187.44 Aligned_cols=119 Identities=18% Similarity=0.086 Sum_probs=99.5
Q ss_pred HHHHHHHHhhc-CCeEEEeehhHHHHHHHHHHHHHcCCe---------------------------------------EE
Q 001037 272 LDRILIKLQRT-GHRVLLFSTMTKLLDILEEYLQWRQLV---------------------------------------YR 311 (1179)
Q Consensus 272 L~~IL~el~~~-g~KVLIFSqft~~ldiLe~~L~~~Gi~---------------------------------------~~ 311 (1179)
+..++..+... +.++||||.....++.+...|...++. +.
T Consensus 331 l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~ 410 (1010)
T 2xgj_A 331 IYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIG 410 (1010)
T ss_dssp HHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEE
T ss_pred HHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCee
Confidence 34444444443 458999999999999998888764432 78
Q ss_pred EEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeee----cCC----CCCcchHHHHhhcccccCCc
Q 001037 312 RIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YDP----DPNPKNEEQAVARAHRIGQK 383 (1179)
Q Consensus 312 rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi----~D~----pWNP~~~eQAiGRIhRIGQk 383 (1179)
.++|+++..+|..++..|++ +.++ +|++|.++++|||++.++.||. ||. ||++..+.|++||++|.|+.
T Consensus 411 ~~Hggl~~~eR~~ve~~F~~--G~ik-VLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d 487 (1010)
T 2xgj_A 411 IHHSGLLPILKEVIEILFQE--GFLK-VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLD 487 (1010)
T ss_dssp EESTTSCHHHHHHHHHHHHT--TCCS-EEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTC
T ss_pred EECCCCCHHHHHHHHHHHhc--CCCc-EEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCC
Confidence 89999999999999999995 4555 4888899999999999999999 999 99999999999999999998
Q ss_pred ceEEEEEEEe
Q 001037 384 REVKVIYMEA 393 (1179)
Q Consensus 384 keV~VyrLva 393 (1179)
....+|.++.
T Consensus 488 ~~G~vi~l~~ 497 (1010)
T 2xgj_A 488 DRGIVIMMID 497 (1010)
T ss_dssp SSEEEEEEEC
T ss_pred CceEEEEEEC
Confidence 7777777765
No 81
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.61 E-value=7.1e-16 Score=174.00 Aligned_cols=91 Identities=16% Similarity=0.290 Sum_probs=87.6
Q ss_pred cCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHH
Q 001037 896 EGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHD 975 (1179)
Q Consensus 896 ~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~na~~y~~~~se~~~~A~~l~~ 975 (1179)
+||.++..|+.+|.+.++||||.+ |++||||.+|.+||+++.|.++.+|+.||.|||.||+.||+++|.+|++|..|++
T Consensus 176 ~~~~~s~~F~~pvd~~~~PdY~~i-Ik~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~ 254 (311)
T 2r0y_A 176 DKVKLSEPFMELVDKDELPEYYEI-VHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTN 254 (311)
T ss_dssp CSSCTTGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred cCCccHHHHhCCCChhhcccHHHH-hCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 589999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhh-cCC
Q 001037 976 LFFDLLKIA-FPD 987 (1179)
Q Consensus 976 ~f~~~~~~~-~~~ 987 (1179)
+|...|+.. +|.
T Consensus 255 ~f~~~~~~~~~p~ 267 (311)
T 2r0y_A 255 YFNYLIQKEFFPE 267 (311)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHhcCCc
Confidence 999999985 553
No 82
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.61 E-value=8e-16 Score=177.08 Aligned_cols=98 Identities=17% Similarity=0.148 Sum_probs=88.2
Q ss_pred HHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcc-cHHHHHHHHHHHHhhhhhhcCC
Q 001037 884 NVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYN-GVMELVSDVQFMLKGAMQFYGF 962 (1179)
Q Consensus 884 ~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~-~v~~~~~d~~lm~~na~~y~~~ 962 (1179)
.+++.+.+.+++.|+.+|..|+.+|.+..+||||.+ |++||||.+|.+|| .+|. ++.+|+.||.|||+||+.||++
T Consensus 81 ~~~~~~l~~l~~~~~~~~~~F~~p~~~~~~PdY~~i-Ik~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~yN~~ 157 (361)
T 2r10_A 81 RFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYK-IQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEY 157 (361)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSSCCCTTTCTTHHHH-CSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHHBCS
T ss_pred HHHHHHHHHHHHcCCcccHHhcCCCCcccCCChHhh-cCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhcCCC
Confidence 344444455566899999999999999999999999 99999999999999 5665 8999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHhhh
Q 001037 963 SHEVRSEARKVHDLFFDLLKIA 984 (1179)
Q Consensus 963 ~se~~~~A~~l~~~f~~~~~~~ 984 (1179)
+|.+|++|..|+++|...+.++
T Consensus 158 ~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 158 DSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999988764
No 83
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.60 E-value=5.5e-16 Score=174.91 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcc-cHHHHHHHHHHHHhh
Q 001037 877 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYN-GVMELVSDVQFMLKG 955 (1179)
Q Consensus 877 ~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~-~v~~~~~d~~lm~~n 955 (1179)
..+.-|..++..+. ++||.+|..|+++|.+..+||||.+ |++||||.+|.+|| .+|. ++.+|+.||.|||+|
T Consensus 28 ~~~~~~~~~L~~~~----~~~r~~~~~F~~p~~~~~~PdY~~i-Ik~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~N 100 (311)
T 2r0y_A 28 KFNRFISFTLDVLI----DKYKDIFKDFIKLPSRKFHPQYYYK-IQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKN 100 (311)
T ss_dssp THHHHHHHHHHHHH----HHSHHHHGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HcCCchhHHhcCCCCcccCCChHHH-cCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHH
Confidence 45666777776555 4799999999999999999999999 99999999999999 6666 899999999999999
Q ss_pred hhhhcCCChHHHHHHHHHHHHHHHHHhhh
Q 001037 956 AMQFYGFSHEVRSEARKVHDLFFDLLKIA 984 (1179)
Q Consensus 956 a~~y~~~~se~~~~A~~l~~~f~~~~~~~ 984 (1179)
|+.||+++|.+|++|.+|+++|...+.++
T Consensus 101 a~~yN~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 101 CQAYNEYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999988765
No 84
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.38 E-value=8.4e-17 Score=165.27 Aligned_cols=120 Identities=18% Similarity=0.245 Sum_probs=107.2
Q ss_pred cCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhh
Q 001037 266 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 345 (1179)
Q Consensus 266 SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~A 345 (1179)
..|+..|..++.. ..+.++||||+....++.|...|...|+.+..++|+++..+|..+++.|+++ .+. +|++|++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g--~~~-vLvaT~~ 89 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG--RVN-VLVATDV 89 (170)
Confidence 4588888888875 3568999999999999999999999999999999999999999999999954 444 5788899
Q ss_pred hccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEEEEE
Q 001037 346 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 390 (1179)
Q Consensus 346 GgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~Vyr 390 (1179)
+++|||++.+++||+||+|||+..+.|++||++|.||...+.++.
T Consensus 90 ~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 134 (170)
T 2yjt_D 90 AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 134 (170)
Confidence 999999999999999999999999999999999999987764443
No 85
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.57 E-value=3.2e-15 Score=165.32 Aligned_cols=103 Identities=14% Similarity=0.148 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhh
Q 001037 876 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 955 (1179)
Q Consensus 876 ~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~n 955 (1179)
......|..|+++|+.+. .+..|..+|.+..+||||.+ |++||||.+|.+||+++.|.++.+|+.||.|||.|
T Consensus 13 ~~l~~~l~~il~~l~~~~------~~~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (265)
T 3uv5_A 13 VTLSSILESIINDMRDLP------NTYPFHTPVNAKVVKDYYKI-ITRPMDLQTLRENVRKRLYPSREEFREHLELIVKN 85 (265)
T ss_dssp HHHHHHHHHHHHHHHTST------TCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC------CchhhhCCCChhhcCCHHHH-hCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhh
Confidence 378889999999998754 48999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCChHHHHHHHHHHHHHHHHHhhhc
Q 001037 956 AMQFYGFSHEVRSEARKVHDLFFDLLKIAF 985 (1179)
Q Consensus 956 a~~y~~~~se~~~~A~~l~~~f~~~~~~~~ 985 (1179)
|+.||+++|.++++|..|.++|...++..-
T Consensus 86 a~~yN~~~s~i~~~A~~l~~~~~~~~~~~~ 115 (265)
T 3uv5_A 86 SATYNGPKHSLTQISQSMLDLCDEKLKEKE 115 (265)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred hhhcCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998754
No 86
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.56 E-value=8.4e-14 Score=173.03 Aligned_cols=112 Identities=15% Similarity=0.090 Sum_probs=92.3
Q ss_pred HhhcCCeEEEeehhHHHHHHHHHHHHHcC------------------------------------CeEEEEcCCCCHHHH
Q 001037 279 LQRTGHRVLLFSTMTKLLDILEEYLQWRQ------------------------------------LVYRRIDGTTSLEDR 322 (1179)
Q Consensus 279 l~~~g~KVLIFSqft~~ldiLe~~L~~~G------------------------------------i~~~rIdGsts~eeR 322 (1179)
+...+.++|||+.....++.+...|.... ..+..++|+++.++|
T Consensus 248 ~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r 327 (715)
T 2va8_A 248 SLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALR 327 (715)
T ss_dssp HHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred HHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHH
Confidence 33567899999999999999888887542 248889999999999
Q ss_pred HHHHHHhccCCCCccEEeeehhhhccCCCCcccceeee----cC-------CCCCcchHHHHhhcccccCCcceEEEEEE
Q 001037 323 ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD-------PDPNPKNEEQAVARAHRIGQKREVKVIYM 391 (1179)
Q Consensus 323 e~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi----~D-------~pWNP~~~eQAiGRIhRIGQkkeV~VyrL 391 (1179)
..+.+.|.+ +.++ +|++|.+++.|||++.+++||. || .++++..+.|+.||++|.|+...-.+|.+
T Consensus 328 ~~v~~~f~~--g~~~-vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l 404 (715)
T 2va8_A 328 DLIEEGFRQ--RKIK-VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVV 404 (715)
T ss_dssp HHHHHHHHT--TCSC-EEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEE
T ss_pred HHHHHHHHc--CCCe-EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEE
Confidence 999999995 4455 4788899999999999999999 99 89999999999999999999888777777
Q ss_pred Ee
Q 001037 392 EA 393 (1179)
Q Consensus 392 va 393 (1179)
.+
T Consensus 405 ~~ 406 (715)
T 2va8_A 405 VR 406 (715)
T ss_dssp CS
T ss_pred eC
Confidence 65
No 87
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.53 E-value=7.3e-14 Score=181.23 Aligned_cols=121 Identities=17% Similarity=0.040 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhhc-CCeEEEeehhHHHHHHHHHHHHHcCCe---------------------------------------
Q 001037 270 WILDRILIKLQRT-GHRVLLFSTMTKLLDILEEYLQWRQLV--------------------------------------- 309 (1179)
Q Consensus 270 ~~L~~IL~el~~~-g~KVLIFSqft~~ldiLe~~L~~~Gi~--------------------------------------- 309 (1179)
..+..++..+... +.++||||.....++.+...|...++.
T Consensus 427 ~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 506 (1108)
T 3l9o_A 427 GDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRG 506 (1108)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHT
T ss_pred hHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcC
Confidence 3444555554443 469999999999999998888643332
Q ss_pred EEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcch--------HHHHhhcccccC
Q 001037 310 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN--------EEQAVARAHRIG 381 (1179)
Q Consensus 310 ~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~--------~eQAiGRIhRIG 381 (1179)
+..++|+++..+|..++..|.++ .++ +|++|.++++|||++.+++||+++.+|++.. |.|++||++|.|
T Consensus 507 V~~~Hg~l~~~~R~~v~~~F~~G--~ik-VLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G 583 (1108)
T 3l9o_A 507 IGIHHSGLLPILKEVIEILFQEG--FLK-VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 583 (1108)
T ss_dssp EEEECSCSCHHHHHHHHHHHHHT--CCC-EEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSS
T ss_pred eeeecCCCCHHHHHHHHHHHhCC--CCe-EEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCC
Confidence 78899999999999999999954 444 5788899999999999999999999887765 999999999999
Q ss_pred CcceEEEEEEEe
Q 001037 382 QKREVKVIYMEA 393 (1179)
Q Consensus 382 QkkeV~VyrLva 393 (1179)
+....++|.+..
T Consensus 584 ~d~~G~~ill~~ 595 (1108)
T 3l9o_A 584 LDDRGIVIMMID 595 (1108)
T ss_dssp SCSSEEEEEEEC
T ss_pred CCCceEEEEEec
Confidence 888877777754
No 88
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.52 E-value=1.9e-13 Score=170.13 Aligned_cols=110 Identities=15% Similarity=0.087 Sum_probs=94.1
Q ss_pred hcCCeEEEeehhHHHHHHHHHHHHHc------------------C---------------CeEEEEcCCCCHHHHHHHHH
Q 001037 281 RTGHRVLLFSTMTKLLDILEEYLQWR------------------Q---------------LVYRRIDGTTSLEDRESAIV 327 (1179)
Q Consensus 281 ~~g~KVLIFSqft~~ldiLe~~L~~~------------------G---------------i~~~rIdGsts~eeRe~iI~ 327 (1179)
..+.++||||.....++.+...|... + ..+..++|+++.++|..+.+
T Consensus 235 ~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 314 (720)
T 2zj8_A 235 RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEE 314 (720)
T ss_dssp HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 46789999999999888888887643 1 24888999999999999999
Q ss_pred HhccCCCCccEEeeehhhhccCCCCcccceeee----cC----CCCCcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 328 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD----PDPNPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 328 ~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi----~D----~pWNP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
.|.+ +.++ +|++|.+++.|+|++..+.||. || .|+++..+.|++||++|.|+...-.+|.+.+
T Consensus 315 ~f~~--g~~~-vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 385 (720)
T 2zj8_A 315 NFRK--GIIK-AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVST 385 (720)
T ss_dssp HHHT--TSSC-EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECS
T ss_pred HHHC--CCCe-EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEec
Confidence 9995 4455 4788899999999999999998 87 6899999999999999999888777777755
No 89
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.52 E-value=6.2e-15 Score=165.20 Aligned_cols=102 Identities=14% Similarity=0.170 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHHhh
Q 001037 876 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 955 (1179)
Q Consensus 876 ~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~~n 955 (1179)
..++..|..|+++|+.+ ..+..|+.+|.+.++||||.+ |.+||||.+|.+||+++.|.++.+|..||.|||+|
T Consensus 46 ~~l~~~~~~il~~l~~~------~~a~~F~~pV~~~~~pdY~~i-Ik~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~N 118 (292)
T 3aad_A 46 VTLSSILESIINDMRDL------PNTYPFHTPVNAKVVKDYYKI-ITRPMDLQTLRENVRKRLYPSREEFREHLELIVKN 118 (292)
T ss_dssp HHHHHHHHHHHHHHSSS------TTCGGGSSSCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC------CcchhhcCCCCchhcccHHHH-cCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHH
Confidence 35678999999999864 578899999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCChHHHHHHHHHHHHHHHHHhhh
Q 001037 956 AMQFYGFSHEVRSEARKVHDLFFDLLKIA 984 (1179)
Q Consensus 956 a~~y~~~~se~~~~A~~l~~~f~~~~~~~ 984 (1179)
|+.||+.+|.+|++|..|.++|...++..
T Consensus 119 a~~yN~~~s~i~~~A~~L~~~~~~~~~~~ 147 (292)
T 3aad_A 119 SATYNGPKHSLTQISQSMLDLCDEKLKEK 147 (292)
T ss_dssp HHHHTCSSSHHHHHHTHHHHTTTTTGGGS
T ss_pred HHHHcCCchHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999988765
No 90
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.52 E-value=5.4e-14 Score=158.14 Aligned_cols=118 Identities=20% Similarity=0.296 Sum_probs=103.0
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehh
Q 001037 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 344 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~ 344 (1179)
...|+.+|.+++... .+.++||||.....++.|...|...|+.+..++|+++..+|..+++.|+++. ++ +|++|.
T Consensus 12 ~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~--~~-vLVaT~ 86 (300)
T 3i32_A 12 VRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGE--VR-VLVATD 86 (300)
T ss_dssp SSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTS--CC-EEEECS
T ss_pred HHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCC--ce-EEEEec
Confidence 457999999999765 3889999999999999999999999999999999999999999999999644 44 578889
Q ss_pred hhccCCCCcccceeeecCCCCCcchHHHHhhcccccCCcceEE
Q 001037 345 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 387 (1179)
Q Consensus 345 AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~ 387 (1179)
++++|||++.+++||+||+||++..+.|++||++|.|+...+.
T Consensus 87 va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i 129 (300)
T 3i32_A 87 VAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVV 129 (300)
T ss_dssp TTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEE
T ss_pred hhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEE
Confidence 9999999999999999999999999999999999999886553
No 91
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.51 E-value=2.4e-13 Score=168.85 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=94.4
Q ss_pred hhcCCeEEEeehhHHHHHHHHHHHHHc------------------------------CCeEEEEcCCCCHHHHHHHHHHh
Q 001037 280 QRTGHRVLLFSTMTKLLDILEEYLQWR------------------------------QLVYRRIDGTTSLEDRESAIVDF 329 (1179)
Q Consensus 280 ~~~g~KVLIFSqft~~ldiLe~~L~~~------------------------------Gi~~~rIdGsts~eeRe~iI~~F 329 (1179)
...+.++||||.....++.+...|... +..+..++|+++.++|..+.+.|
T Consensus 239 ~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 318 (702)
T 2p6r_A 239 VAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAF 318 (702)
T ss_dssp HHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHH
T ss_pred HhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHH
Confidence 346889999999998888888877643 13467799999999999999999
Q ss_pred ccCCCCccEEeeehhhhccCCCCcccceeee----cC---CCCCcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 330 NSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD---PDPNPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 330 n~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi----~D---~pWNP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
.++ .++ +|++|.+++.|||++.++.||. || .++++..+.|++||++|.|+.+.-.+|.+..
T Consensus 319 ~~g--~~~-vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 386 (702)
T 2p6r_A 319 RRG--NIK-VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVG 386 (702)
T ss_dssp HTT--SCC-EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECC
T ss_pred HCC--CCe-EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEec
Confidence 954 455 5788899999999999999998 77 7899999999999999999988877787765
No 92
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.49 E-value=2.2e-13 Score=175.18 Aligned_cols=120 Identities=22% Similarity=0.136 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCC--------------------------------------
Q 001037 267 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL-------------------------------------- 308 (1179)
Q Consensus 267 gKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi-------------------------------------- 308 (1179)
.++..|..+|.. ....++||||......+.+...|...++
T Consensus 322 ~~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~ 399 (997)
T 4a4z_A 322 KTWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLE 399 (997)
T ss_dssp THHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhh
Confidence 345555555543 2457999999999999999988876555
Q ss_pred -eEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCC---------CcchHHHHhhccc
Q 001037 309 -VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP---------NPKNEEQAVARAH 378 (1179)
Q Consensus 309 -~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pW---------NP~~~eQAiGRIh 378 (1179)
.+..++|+++..+|..++..|+.+ .++ +|++|.++++|||++. .+||+++.++ ++..+.|++||++
T Consensus 400 ~gi~~~H~gl~~~~R~~v~~~F~~G--~~k-VLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAG 475 (997)
T 4a4z_A 400 RGIAVHHGGLLPIVKELIEILFSKG--FIK-VLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAG 475 (997)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTT--CCS-EEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGC
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCC--CCc-EEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccc
Confidence 478899999999999999999954 455 5888899999999999 7777766655 9999999999999
Q ss_pred ccCCcceEEEEEEE
Q 001037 379 RIGQKREVKVIYME 392 (1179)
Q Consensus 379 RIGQkkeV~VyrLv 392 (1179)
|.|+.....+|.+.
T Consensus 476 R~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 476 RRGLDSTGTVIVMA 489 (997)
T ss_dssp CTTTCSSEEEEEEC
T ss_pred cCCCCcceEEEEec
Confidence 99998887777775
No 93
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.46 E-value=1.6e-12 Score=168.80 Aligned_cols=87 Identities=18% Similarity=0.172 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEE-EEcCCCCHHHHHHHHHHhccCCCCccEEeee---h
Q 001037 268 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYR-RIDGTTSLEDRESAIVDFNSHDSDCFIFLLS---I 343 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~-rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlS---T 343 (1179)
|...|..+|.. .+.++||||+....++.|...|...|+.+. .++| +|.+ ++.|++ +.+.||+++ |
T Consensus 297 k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~--G~~~VLVatas~T 365 (1104)
T 4ddu_A 297 SKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKV--GKINILIGVQAYY 365 (1104)
T ss_dssp CHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHH--TSCSEEEEETTTH
T ss_pred HHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHC--CCCCEEEEecCCC
Confidence 44455555555 358999999999999999999999999998 9998 3555 999995 445564443 9
Q ss_pred hhhccCCCCcc-cceeeecCCCC
Q 001037 344 RAAGRGLNLQS-ADTVIIYDPDP 365 (1179)
Q Consensus 344 ~AGgeGLNLQ~-AdtVIi~D~pW 365 (1179)
+++++|||++. +++||+||+|-
T Consensus 366 dvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 366 GKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHHCCSCCCTTTCCEEEEESCCE
T ss_pred CeeEecCcCCCCCCEEEEECCCC
Confidence 99999999999 99999999998
No 94
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.36 E-value=1e-12 Score=155.32 Aligned_cols=95 Identities=15% Similarity=0.103 Sum_probs=84.4
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeec
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY 361 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~ 361 (1179)
.+.++||||+....++.+...|...|+.+..++|.+. .++++.|+++ .+. +|++|.++++|||+.. +.||+|
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g--~~~-vLVaT~v~~~GiDip~-~~VI~~ 258 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLT--DWD-FVVTTDISEMGANFRA-GRVIDP 258 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSS--CCS-EEEECGGGGSSCCCCC-SEEEEC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccC--Cce-EEEECCHHHhCcCCCC-CEEEEC
Confidence 3568999999999999999999999999999999763 5789999854 444 5888999999999999 999999
Q ss_pred C--------------------CCCCcchHHHHhhcccccCCcc
Q 001037 362 D--------------------PDPNPKNEEQAVARAHRIGQKR 384 (1179)
Q Consensus 362 D--------------------~pWNP~~~eQAiGRIhRIGQkk 384 (1179)
| .|.++..+.|++||++|.|...
T Consensus 259 ~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~ 301 (451)
T 2jlq_A 259 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE 301 (451)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred CCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCC
Confidence 8 8899999999999999999833
No 95
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.34 E-value=3e-12 Score=165.85 Aligned_cols=74 Identities=12% Similarity=0.143 Sum_probs=60.3
Q ss_pred CCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeee---hhhhccCCCCccc-cee
Q 001037 283 GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS---IRAAGRGLNLQSA-DTV 358 (1179)
Q Consensus 283 g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlS---T~AGgeGLNLQ~A-dtV 358 (1179)
+.++||||.....++.|...|... +.+..++|++ ..+++.|++ +.+.||+++ |+++++|||++.+ ++|
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~--G~~~VLVaTas~Tdv~~rGIDip~VI~~V 346 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVE--GEIDHLIGTAHYYGTLVRGLDLPERIRFA 346 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHH--TSCSEEEEECC------CCSCCTTTCCEE
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHc--CCCcEEEEecCCCCeeEeccccCCcccEE
Confidence 678999999999999999999988 9999999987 378899995 455665553 8999999999996 999
Q ss_pred eecCCC
Q 001037 359 IIYDPD 364 (1179)
Q Consensus 359 Ii~D~p 364 (1179)
|+||+|
T Consensus 347 I~~~~P 352 (1054)
T 1gku_B 347 VFVGCP 352 (1054)
T ss_dssp EEESCC
T ss_pred EEeCCC
Confidence 999999
No 96
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.34 E-value=4.4e-12 Score=149.02 Aligned_cols=97 Identities=19% Similarity=0.094 Sum_probs=84.1
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccce----
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT---- 357 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~Adt---- 357 (1179)
.+.++||||.....++.+.+.|...++.+..++|. +|.++++.|+++. +. +|++|.++++|||++ +++
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~--~~-vLVaT~v~e~GiDip-~~~VI~~ 241 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEK--WD-FVITTDISEMGANFK-ADRVIDP 241 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSC--CS-EEEECGGGGTSCCCC-CSEEEEC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCC--Ce-EEEECchHHcCcccC-CcEEEec
Confidence 35689999999999999999999999999999997 5788999999644 44 588899999999999 544
Q ss_pred -------------eeecCCCCCcchHHHHhhcccccCCcceE
Q 001037 358 -------------VIIYDPDPNPKNEEQAVARAHRIGQKREV 386 (1179)
Q Consensus 358 -------------VIi~D~pWNP~~~eQAiGRIhRIGQkkeV 386 (1179)
||+++.|.++..+.|+.||++|.|....+
T Consensus 242 g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~ 283 (431)
T 2v6i_A 242 RKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGD 283 (431)
T ss_dssp CEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCC
T ss_pred CccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCe
Confidence 57789999999999999999999965543
No 97
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.33 E-value=5.1e-11 Score=153.32 Aligned_cols=112 Identities=12% Similarity=0.082 Sum_probs=86.0
Q ss_pred CCeEEEeehhHHHHHHHHHHHHHcC------------CeE-EEEcCC----------C----------CH----------
Q 001037 283 GHRVLLFSTMTKLLDILEEYLQWRQ------------LVY-RRIDGT----------T----------SL---------- 319 (1179)
Q Consensus 283 g~KVLIFSqft~~ldiLe~~L~~~G------------i~~-~rIdGs----------t----------s~---------- 319 (1179)
+.+++|||..+..+..+...|...+ +++ +.++|. + +.
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 4689999999999999999887654 454 455553 1 11
Q ss_pred -------------------HHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCCCCCcchHHHHhhccccc
Q 001037 320 -------------------EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 380 (1179)
Q Consensus 320 -------------------eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~pWNP~~~eQAiGRIhRI 380 (1179)
..|..++++|++ +.++| |++++.+.+|+|.+.+ +++++|.|.+...+.||+||+.|.
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~--g~i~I-LIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~ 692 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKN--QDIDL-LIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRI 692 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHT--TSSSE-EEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCC
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHc--CCCeE-EEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcC
Confidence 147889999995 45665 6677999999999999 678899999999999999999999
Q ss_pred CCc-c-eEEEEEEEeehhhh
Q 001037 381 GQK-R-EVKVIYMEAVVDKI 398 (1179)
Q Consensus 381 GQk-k-eV~VyrLvaVEE~I 398 (1179)
+.. | ...|+.++.+.+.+
T Consensus 693 ~~~~K~~G~IVdf~~~~~~l 712 (1038)
T 2w00_A 693 YDATKTFGNIVTFRDLERST 712 (1038)
T ss_dssp CCTTCCSEEEEESSCCHHHH
T ss_pred CCCCCCcEEEEEccccHHHH
Confidence 864 3 36777776644433
No 98
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.26 E-value=8.9e-12 Score=146.88 Aligned_cols=100 Identities=13% Similarity=0.070 Sum_probs=79.5
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeee-
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII- 360 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi- 360 (1179)
.+.++||||.....++.+...|...++.+..++| ++|.+++..|+++ .+. +|++|.+++.|||++ +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g--~~~-vLVaT~v~e~GiDip-v~~VI~~ 247 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQK--KPD-FILATDIAEMGANLC-VERVLDC 247 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------C--CCS-EEEESSSTTCCTTCC-CSEEEEC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCC--Cce-EEEECChhheeeccC-ceEEEeC
Confidence 4789999999999999999999999999999999 4688999999954 444 588899999999999 999986
Q ss_pred ------------------cCCCCCcchHHHHhhcccccC-CcceEEEE
Q 001037 361 ------------------YDPDPNPKNEEQAVARAHRIG-QKREVKVI 389 (1179)
Q Consensus 361 ------------------~D~pWNP~~~eQAiGRIhRIG-QkkeV~Vy 389 (1179)
|+.|.++..+.|+.||++|.| +...+.++
T Consensus 248 g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l 295 (440)
T 1yks_A 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYY 295 (440)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred CccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEE
Confidence 899999999999999999985 44444333
No 99
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.21 E-value=2.7e-11 Score=150.00 Aligned_cols=98 Identities=15% Similarity=0.148 Sum_probs=85.6
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeee-
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII- 360 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi- 360 (1179)
.+.++||||.....++.+...|...++.+..++|. +|.++++.|+++ .+. +|++|.++++|||++ +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g--~~~-VLVaTdv~e~GIDip-v~~VI~~ 480 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNG--DWD-FVITTDISEMGANFG-ASRVIDC 480 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTC--CCS-EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCC--Cce-EEEECchhhcceeeC-CcEEEEC
Confidence 47899999999999999999999999999999993 789999999954 444 578889999999999 999997
Q ss_pred -------------------cCCCCCcchHHHHhhccccc-CCcceEE
Q 001037 361 -------------------YDPDPNPKNEEQAVARAHRI-GQKREVK 387 (1179)
Q Consensus 361 -------------------~D~pWNP~~~eQAiGRIhRI-GQkkeV~ 387 (1179)
||+|.++..+.|++||++|. |+...+.
T Consensus 481 g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai 527 (673)
T 2wv9_A 481 RKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEY 527 (673)
T ss_dssp CEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEE
T ss_pred CCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEE
Confidence 66888889999999999999 5554443
No 100
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.19 E-value=1.8e-11 Score=145.04 Aligned_cols=94 Identities=14% Similarity=0.134 Sum_probs=81.4
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeee-
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII- 360 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi- 360 (1179)
.+.++||||.....++.|...|...++.+..++|. +|..++..|+++ .+. +|++|.++++|||+.. ++||+
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g--~~~-iLVaT~v~~~GiDip~-~~VI~~ 260 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNG--DWD-FVITTDISEMGANFGA-SRVIDC 260 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSC--CCS-EEEESSCC---CCCSC-SEEEEC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCC--Cce-EEEECChHHhCeecCC-CEEEEC
Confidence 36789999999999999999999999999999995 678899999854 444 5888999999999999 99998
Q ss_pred -------------------cCCCCCcchHHHHhhcccccCCc
Q 001037 361 -------------------YDPDPNPKNEEQAVARAHRIGQK 383 (1179)
Q Consensus 361 -------------------~D~pWNP~~~eQAiGRIhRIGQk 383 (1179)
||+|.++..+.|++||++|.|..
T Consensus 261 G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~ 302 (459)
T 2z83_A 261 RKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ 302 (459)
T ss_dssp CEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC
T ss_pred CcccccccccccccccccccCCCCCHHHHHHhccccCCCCCC
Confidence 88999999999999999999973
No 101
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.16 E-value=1.1e-10 Score=143.42 Aligned_cols=96 Identities=14% Similarity=0.107 Sum_probs=83.5
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCccccee---
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV--- 358 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtV--- 358 (1179)
.+.++||||.....++.+...|...++.+..++|. +|.++++.|+++. +. +|++|+++++|||+. +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~--~~-VLVaTdv~~rGiDi~-v~~VId~ 425 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTD--WD-FVVTTDISEMGANFR-AGRVIDP 425 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSC--CS-EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCC--cE-EEEECcHHHcCcccC-ceEEEEC
Confidence 46789999999999999999999999999999984 6888999998643 44 588899999999996 8888
Q ss_pred -----------------eecCCCCCcchHHHHhhcccccCCcce
Q 001037 359 -----------------IIYDPDPNPKNEEQAVARAHRIGQKRE 385 (1179)
Q Consensus 359 -----------------Ii~D~pWNP~~~eQAiGRIhRIGQkke 385 (1179)
|+||+|-++..+.||+||++|.|....
T Consensus 426 g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G 469 (618)
T 2whx_A 426 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED 469 (618)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC
T ss_pred cceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCC
Confidence 667778888899999999999986443
No 102
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.15 E-value=1.1e-10 Score=121.98 Aligned_cols=103 Identities=21% Similarity=0.371 Sum_probs=89.3
Q ss_pred CcHHHHHHHHHHHHHHHHhhhccCCchhHhhhhhcccccCCCccccccCCccchHHHHHHhcccCcccHHHHHHHHHHHH
Q 001037 874 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 953 (1179)
Q Consensus 874 ~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~p~r~~~p~yy~~~i~~pidl~~i~qr~~~~~Y~~v~~~~~d~~lm~ 953 (1179)
|+..+++..+.|++.|+..+ .+.-|++ | . ++.||||.+|++||+.+.|.++.+|+.||.|||
T Consensus 72 ~~~el~~~l~~vl~~L~~~~------~s~~~~~---------y-~--~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf 133 (183)
T 3lqh_A 72 LEKELQISLKQVLTALLNSR------TTSHLLR---------Y-R--QQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKII 133 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTCH------HHHHHHT---------C-C--C--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc------ccHhhhh---------h-h--hcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 67788899999999998664 2333433 3 3 589999999999999999999999999999999
Q ss_pred hhhhhhcCCChHHHHHHHHHHHHHHHHHhhhcCCCchHHhh
Q 001037 954 KGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREAR 994 (1179)
Q Consensus 954 ~na~~y~~~~se~~~~A~~l~~~f~~~~~~~~~~~~~~~~~ 994 (1179)
.|+..||+..+|+.+....|+.+|...|+.+||..+..+-|
T Consensus 134 ~n~~~~~~~~~e~~~ag~~l~~~f~~~l~~vfpwf~~~~~~ 174 (183)
T 3lqh_A 134 QAAINSDGGQPEIKKANSMVKSFFIRQMERVFPWFSVKKSR 174 (183)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHCTTSCGGGCT
T ss_pred HHHhhccCCChhhhhhhhHHHHHHHHHHHHHCCCCCccccc
Confidence 99999999999999999999999999999999999887755
No 103
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.10 E-value=5.1e-10 Score=140.65 Aligned_cols=108 Identities=15% Similarity=0.092 Sum_probs=90.8
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHH-----------cCCeEEEEcCCCCHHHHHHHHHHhccC---CCCccEEeeehhhhc
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQW-----------RQLVYRRIDGTTSLEDRESAIVDFNSH---DSDCFIFLLSIRAAG 347 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~-----------~Gi~~~rIdGsts~eeRe~iI~~Fn~~---ds~i~VLLlST~AGg 347 (1179)
.+.++|||+.....++.+...|.. .++.++.++|+++.++|..+++.|... .+.++ +|++|.+++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~k-VlVAT~iae 380 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRK-VVISTNIAE 380 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEE-EEEECTHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceE-EEEeCcHHH
Confidence 467999999999999999998875 588899999999999999999999711 23444 588889999
Q ss_pred cCCCCcccceeeecCC------------------CCCcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 348 RGLNLQSADTVIIYDP------------------DPNPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 348 eGLNLQ~AdtVIi~D~------------------pWNP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
.|||+..+++||.++. |.+...+.||.||++|. ++-.+|+|++
T Consensus 381 ~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~ 441 (773)
T 2xau_A 381 TSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYT 441 (773)
T ss_dssp HTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSC
T ss_pred hCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEec
Confidence 9999999999999777 88999999999999998 2334566644
No 104
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.07 E-value=2.3e-10 Score=140.70 Aligned_cols=97 Identities=18% Similarity=0.135 Sum_probs=80.7
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceee--
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI-- 359 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVI-- 359 (1179)
.+.++|||++....++.+.+.|...++.+..++|+++.++ |.+ . .. -+|++|++++.|||+. ++.||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~-~-~~-~VLVATdVaerGIDId-V~~VI~~ 463 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPT-I-GD-VVVVATDALMTGYTGD-FDSVIDC 463 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCS-S-SC-EEEEECTTHHHHCCCC-BSEEEEC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHh-C-CC-cEEEECChHHccCCCC-CcEEEec
Confidence 4789999999999999999999999999999999998654 443 2 22 3688999999999996 99888
Q ss_pred --------ecC-----------CCCCcchHHHHhhcccccCCcceEEEEEEEe
Q 001037 360 --------IYD-----------PDPNPKNEEQAVARAHRIGQKREVKVIYMEA 393 (1179)
Q Consensus 360 --------i~D-----------~pWNP~~~eQAiGRIhRIGQkkeV~VyrLva 393 (1179)
+|| .|-++..+.||+||++| |.... |.|++
T Consensus 464 Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~---i~lvt 512 (666)
T 3o8b_A 464 NTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI---YRFVT 512 (666)
T ss_dssp CEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE---EEESC
T ss_pred CcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE---EEEEe
Confidence 567 78888999999999999 76543 55543
No 105
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.06 E-value=5.6e-10 Score=138.15 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=102.5
Q ss_pred cCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhh
Q 001037 266 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 345 (1179)
Q Consensus 266 SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~A 345 (1179)
.+++..|...|..+...+.+|||||.....++.|..+|...|+.+..++|+++..+|..+++.|+. +.+. +|++|.+
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~--g~~~-VLvaT~~ 498 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRL--GHYD-CLVGINL 498 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHT--TSCS-EEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhc--CCce-EEEccCh
Confidence 356777777777777789999999999999999999999999999999999999999999999985 4444 5788899
Q ss_pred hccCCCCcccceeeecCC-----CCCcchHHHHhhcccccC
Q 001037 346 AGRGLNLQSADTVIIYDP-----DPNPKNEEQAVARAHRIG 381 (1179)
Q Consensus 346 GgeGLNLQ~AdtVIi~D~-----pWNP~~~eQAiGRIhRIG 381 (1179)
+++|+|++.++.||++|. ++++..+.|++||++|.|
T Consensus 499 l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~ 539 (664)
T 1c4o_A 499 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA 539 (664)
T ss_dssp CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST
T ss_pred hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC
Confidence 999999999999999998 899999999999999986
No 106
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.02 E-value=1.2e-09 Score=135.11 Aligned_cols=112 Identities=21% Similarity=0.194 Sum_probs=101.2
Q ss_pred cCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhh
Q 001037 266 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 345 (1179)
Q Consensus 266 SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~A 345 (1179)
.+++..|...|..+...+.+|||||.....++.|..+|...|+.+..++|.++..+|..+++.|+.+ .+. +|++|.+
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g--~~~-VLVaT~~ 504 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLG--KYD-VLVGINL 504 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHT--SCS-EEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcC--CeE-EEEecch
Confidence 3566777677777777889999999999999999999999999999999999999999999999853 444 5888899
Q ss_pred hccCCCCcccceeeecCC-----CCCcchHHHHhhccccc
Q 001037 346 AGRGLNLQSADTVIIYDP-----DPNPKNEEQAVARAHRI 380 (1179)
Q Consensus 346 GgeGLNLQ~AdtVIi~D~-----pWNP~~~eQAiGRIhRI 380 (1179)
+++|+|++.++.||++|. ++++..+.|++||++|.
T Consensus 505 l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~ 544 (661)
T 2d7d_A 505 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 544 (661)
T ss_dssp CSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS
T ss_pred hhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC
Confidence 999999999999999998 89999999999999997
No 107
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.95 E-value=2e-08 Score=135.37 Aligned_cols=82 Identities=21% Similarity=0.170 Sum_probs=64.5
Q ss_pred eEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeee----cC------CCCCcchHHHHhhccc
Q 001037 309 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD------PDPNPKNEEQAVARAH 378 (1179)
Q Consensus 309 ~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi----~D------~pWNP~~~eQAiGRIh 378 (1179)
.+..++|+++..+|..+.+.|.+ +.++| |++|.+++.||||++...||. || .+.++..+.|++||++
T Consensus 1215 GIa~hHagL~~~~R~~VE~lF~~--G~i~V-LvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAG 1291 (1724)
T 4f92_B 1215 GVGYLHEGLSPMERRLVEQLFSS--GAIQV-VVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHAN 1291 (1724)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHH--TSBCE-EEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBC
T ss_pred CEEEECCCCCHHHHHHHHHHHHC--CCCeE-EEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhcccc
Confidence 47789999999999999999995 44555 778899999999997665552 22 2467889999999999
Q ss_pred ccCCcceEEEEEEEe
Q 001037 379 RIGQKREVKVIYMEA 393 (1179)
Q Consensus 379 RIGQkkeV~VyrLva 393 (1179)
|.|....-.++.++.
T Consensus 1292 R~g~d~~G~avll~~ 1306 (1724)
T 4f92_B 1292 RPLQDDEGRCVIMCQ 1306 (1724)
T ss_dssp CTTTCSCEEEEEEEE
T ss_pred CCCCCCceEEEEEec
Confidence 999876655555543
No 108
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.89 E-value=3.5e-09 Score=132.07 Aligned_cols=129 Identities=13% Similarity=0.168 Sum_probs=107.5
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehh
Q 001037 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 344 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~ 344 (1179)
...|+.+|.++|......+..|||||......+.|...|...|+++..|+|.....+|..+...|+. +. ++++|+
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~--g~---VlIATd 488 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK--GA---VTIATN 488 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST--TC---EEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC--Ce---EEEeCC
Confidence 3468888988888777788999999999999999999999999999999999877777655555552 22 688999
Q ss_pred hhccCCCCc--------ccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeehhhhhh
Q 001037 345 AAGRGLNLQ--------SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 400 (1179)
Q Consensus 345 AGgeGLNLQ--------~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~I~~ 400 (1179)
.+|+|+|+. ...+||+||.|-++..|.|++||++|.|..-.... |++.++.++.
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~--~vs~eD~l~r 550 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQF--YLSMEDELMR 550 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEE--EEETTSSGGG
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEE--EecHHHHHHH
Confidence 999999999 67899999999999999999999999998876533 3455555443
No 109
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.85 E-value=8.7e-09 Score=126.31 Aligned_cols=129 Identities=16% Similarity=0.159 Sum_probs=106.4
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehh
Q 001037 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 344 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~ 344 (1179)
...|+.+|...+......+..|||||......+.|...|...|+++..++|.....++..+...|+. +. ++++|.
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~--g~---VtVATd 530 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQK--GM---VTIATN 530 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHST--TC---EEEEET
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCC--Ce---EEEEcc
Confidence 3468889988888877789999999999999999999999999999999998654455444455553 33 688999
Q ss_pred hhccCCCCc--------ccceeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeehhhhhh
Q 001037 345 AAGRGLNLQ--------SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 400 (1179)
Q Consensus 345 AGgeGLNLQ--------~AdtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~I~~ 400 (1179)
.+|+|+++. ...+||++|+|-++..+.|++||++|.|.+-.... |++.++.++.
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~--fvsleD~l~r 592 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIF--FLSLEDDLLR 592 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEE--EEETTSHHHH
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEE--EechhHHHHH
Confidence 999999997 56799999999999999999999999998877533 4455665543
No 110
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.80 E-value=1.2e-08 Score=126.34 Aligned_cols=106 Identities=24% Similarity=0.269 Sum_probs=92.6
Q ss_pred eEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeeecCC-
Q 001037 285 RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP- 363 (1179)
Q Consensus 285 KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi~D~- 363 (1179)
..||||.....++.+...|...++.+..++|+++.++|..++..|+++++.++| |++|.+++.|||+ .+++||++++
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~V-LVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKI-LVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCE-EEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEE-EEeCcHHHCCcCc-CccEEEECCcc
Confidence 347778888999999999999999999999999999999999999974455665 7788999999999 9999999999
Q ss_pred -------------CCCcchHHHHhhcccccCCcc-eEEEEEEE
Q 001037 364 -------------DPNPKNEEQAVARAHRIGQKR-EVKVIYME 392 (1179)
Q Consensus 364 -------------pWNP~~~eQAiGRIhRIGQkk-eV~VyrLv 392 (1179)
|++...+.|+.||++|.|+.. .-.||.+.
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~ 442 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMN 442 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESS
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEe
Confidence 889999999999999999873 34555553
No 111
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.78 E-value=4.9e-08 Score=131.70 Aligned_cols=81 Identities=20% Similarity=0.199 Sum_probs=64.6
Q ss_pred eEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCcccceeee----cCCC------CCcchHHHHhhccc
Q 001037 309 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YDPD------PNPKNEEQAVARAH 378 (1179)
Q Consensus 309 ~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ~AdtVIi----~D~p------WNP~~~eQAiGRIh 378 (1179)
.+...+|+++.++|..+...|++ +.++| |++|.+++.|+||++.+.||. ||+. .++..+.|++|||+
T Consensus 380 Gva~HHagL~~~~R~~vE~~F~~--G~i~v-lvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAG 456 (1724)
T 4f92_B 380 GFAIHHAGMTRVDRTLVEDLFAD--KHIQV-LVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAG 456 (1724)
T ss_dssp TEEEECSSSCTHHHHHHHHHHHT--TCCCE-EEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBS
T ss_pred CEEEEcCCCCHHHHHHHHHHHHC--CCCeE-EEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhcc
Confidence 46788999999999999999995 45554 788899999999998777763 6653 47889999999999
Q ss_pred ccCCcceEEEEEEE
Q 001037 379 RIGQKREVKVIYME 392 (1179)
Q Consensus 379 RIGQkkeV~VyrLv 392 (1179)
|.|....-.++.+.
T Consensus 457 R~g~d~~G~~ii~~ 470 (1724)
T 4f92_B 457 RPQYDTKGEGILIT 470 (1724)
T ss_dssp CTTTCSCEEEEEEE
T ss_pred CCCCCCccEEEEEe
Confidence 99876554444443
No 112
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=98.76 E-value=1.8e-08 Score=125.43 Aligned_cols=129 Identities=12% Similarity=0.109 Sum_probs=109.1
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehh
Q 001037 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 344 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~ 344 (1179)
...|+.+|.+.+......+..|||||......+.|...|...|+++..|+|.....++..+...|+.+ . ++++|.
T Consensus 423 ~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~---VtIATn 497 (853)
T 2fsf_A 423 EAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--A---VTIATN 497 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--C---EEEEES
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--e---EEEecc
Confidence 34689999998888777889999999999999999999999999999999998777776677778742 2 688999
Q ss_pred hhccCCCCccc-------------------------------------ceeeecCCCCCcchHHHHhhcccccCCcceEE
Q 001037 345 AAGRGLNLQSA-------------------------------------DTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 387 (1179)
Q Consensus 345 AGgeGLNLQ~A-------------------------------------dtVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~ 387 (1179)
.+|+|+|+... .+||.+|.|-++..+.|++||++|.|..-...
T Consensus 498 mAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~ 577 (853)
T 2fsf_A 498 MAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSR 577 (853)
T ss_dssp CCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEE
T ss_pred cccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEE
Confidence 99999999853 59999999999999999999999999887654
Q ss_pred EEEEEeehhhhhh
Q 001037 388 VIYMEAVVDKISS 400 (1179)
Q Consensus 388 VyrLvaVEE~I~~ 400 (1179)
.| ++.++.++.
T Consensus 578 ~f--ls~eD~l~r 588 (853)
T 2fsf_A 578 FY--LSMEDALMR 588 (853)
T ss_dssp EE--EETTSGGGG
T ss_pred EE--ecccHHHHH
Confidence 33 455665543
No 113
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=98.70 E-value=4.2e-08 Score=122.52 Aligned_cols=129 Identities=15% Similarity=0.135 Sum_probs=107.5
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehh
Q 001037 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 344 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~ 344 (1179)
...|+.+|...+......+..|||||......+.|...|...|+++..|+|.....++..+...|+. +. ++++|.
T Consensus 442 ~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~--G~---VtIATn 516 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRR--GG---VTVATN 516 (922)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTST--TC---EEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC--Ce---EEEecc
Confidence 3468888888888877788999999999999999999999999999999999876666656667763 22 688999
Q ss_pred hhccCCCCccc----------------------------------------------------ceeeecCCCCCcchHHH
Q 001037 345 AAGRGLNLQSA----------------------------------------------------DTVIIYDPDPNPKNEEQ 372 (1179)
Q Consensus 345 AGgeGLNLQ~A----------------------------------------------------dtVIi~D~pWNP~~~eQ 372 (1179)
.+|+|+|+... .+||.+|.|-++..+.|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999998853 59999999999999999
Q ss_pred HhhcccccCCcceEEEEEEEeehhhhhh
Q 001037 373 AVARAHRIGQKREVKVIYMEAVVDKISS 400 (1179)
Q Consensus 373 AiGRIhRIGQkkeV~VyrLvaVEE~I~~ 400 (1179)
++||++|.|..-.... |++.++.++.
T Consensus 597 r~GRTGRqGdpG~s~f--flSleD~l~r 622 (922)
T 1nkt_A 597 LRGRSGRQGDPGESRF--YLSLGDELMR 622 (922)
T ss_dssp HHHTSSGGGCCEEEEE--EEETTSHHHH
T ss_pred HhcccccCCCCeeEEE--EechhHHHHH
Confidence 9999999998876543 3455665543
No 114
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.67 E-value=1.1e-08 Score=112.87 Aligned_cols=105 Identities=9% Similarity=0.136 Sum_probs=75.3
Q ss_pred hhHHHHHHHHcC--CCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchhhhccCCccEEEEcCCccCCChhhH
Q 001037 2 SMWQSELHKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV 79 (1179)
Q Consensus 2 sQW~~Ef~Kw~P--~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriKN~~Sk 79 (1179)
.||.++|.+|.. ...+..+.+...... ......+|+|+||+.+.+....+. ..|++|||||||++.+. .
T Consensus 171 ~q~~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~I~v~T~~~l~~~~~~~~-~~~~~vIiDEaH~~~~~--~ 241 (282)
T 1rif_A 171 TQMADDFVDYRLFSHAMIKKIGGGASKDD------KYKNDAPVVVGTWQTVVKQPKEWF-SQFGMMMNDECHLATGK--S 241 (282)
T ss_dssp HHHHHHHHHHTSCCGGGEEECSTTCSSTT------CCCTTCSEEEECHHHHTTSCGGGG-GGEEEEEEETGGGCCHH--H
T ss_pred HHHHHHHHHhcccccceEEEEeCCCcchh------hhccCCcEEEEchHHHHhhHHHHH-hhCCEEEEECCccCCcc--c
Confidence 689999999974 345555555432211 122467999999999987644322 36899999999999853 4
Q ss_pred HHHHHHhh-cCCcEEEEeccCCCCChHHHHHHHhhhcC
Q 001037 80 LARDLDRY-RCQRRLLLTGTPLQNDLKELWSLLNLLLP 116 (1179)
Q Consensus 80 ~tkaL~~L-ka~~RLLLTGTPiqN~l~EL~sLL~fL~P 116 (1179)
....+..+ .+.++|+|||||. |...+++.++.++.|
T Consensus 242 ~~~il~~~~~~~~~l~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 242 ISSIISGLNNCMFKFGLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp HHHHTTTCTTCCEEEEECSSCC-TTSTTHHHHHHHHCE
T ss_pred HHHHHHHhhcCCeEEEEeCCCC-CcchHHHHHHHhcCC
Confidence 44455555 6788999999996 445788888888766
No 115
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.40 E-value=3.1e-07 Score=99.32 Aligned_cols=85 Identities=20% Similarity=0.223 Sum_probs=63.5
Q ss_pred hhHHHHHHHHcCCCc-EEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchhhhccCCccEEEEcCCccCCChhhHH
Q 001037 2 SMWQSELHKWLPSVS-CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVL 80 (1179)
Q Consensus 2 sQW~~Ef~Kw~P~l~-Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriKN~~Sk~ 80 (1179)
.||..+|.+| ++. +..+.|... ...+|+|+||+.+......+. ..|++|||||||++.+.. .
T Consensus 147 ~q~~~~~~~~--~~~~v~~~~g~~~------------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~~--~ 209 (237)
T 2fz4_A 147 EQWKERLGIF--GEEYVGEFSGRIK------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAES--Y 209 (237)
T ss_dssp HHHHHHHGGG--CGGGEEEESSSCB------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTTT--H
T ss_pred HHHHHHHHhC--CCCeEEEEeCCCC------------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCChH--H
Confidence 6899999994 455 778877642 246899999999988766553 369999999999997643 3
Q ss_pred HHHHHhhcCCcEEEEeccCCCCC
Q 001037 81 ARDLDRYRCQRRLLLTGTPLQND 103 (1179)
Q Consensus 81 tkaL~~Lka~~RLLLTGTPiqN~ 103 (1179)
.+.+..+...++|+|||||..++
T Consensus 210 ~~i~~~~~~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 210 VQIAQMSIAPFRLGLTATFERED 232 (237)
T ss_dssp HHHHHTCCCSEEEEEEESCC---
T ss_pred HHHHHhccCCEEEEEecCCCCCC
Confidence 34445567889999999998765
No 116
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.11 E-value=4.5e-06 Score=86.64 Aligned_cols=96 Identities=19% Similarity=0.110 Sum_probs=65.6
Q ss_pred hhHHHHHHHHcCCCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchh--hhccCCccEEEEcCCccCCC--hh
Q 001037 2 SMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD--RE 77 (1179)
Q Consensus 2 sQW~~Ef~Kw~P~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~--~L~ki~wdlVIIDEAHriKN--~~ 77 (1179)
.||.+++.++++.+++..+.|........ ......++|+|+|++.+..... .+.-..+++|||||||++.+ ..
T Consensus 86 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~ 162 (207)
T 2gxq_A 86 LQVASELTAVAPHLKVVAVYGGTGYGKQK---EALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFE 162 (207)
T ss_dssp HHHHHHHHHHCTTSCEEEECSSSCSHHHH---HHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCH
T ss_pred HHHHHHHHHHhhcceEEEEECCCChHHHH---HHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchH
Confidence 58999999999888888888765332211 1112368999999998876432 23334689999999999743 23
Q ss_pred hHHHHHHHhhc-CCcEEEEeccCC
Q 001037 78 SVLARDLDRYR-CQRRLLLTGTPL 100 (1179)
Q Consensus 78 Sk~tkaL~~Lk-a~~RLLLTGTPi 100 (1179)
..+...+..+. ....++||||+-
T Consensus 163 ~~~~~i~~~~~~~~~~i~~SAT~~ 186 (207)
T 2gxq_A 163 EEVEALLSATPPSRQTLLFSATLP 186 (207)
T ss_dssp HHHHHHHHTSCTTSEEEEECSSCC
T ss_pred HHHHHHHHhCCccCeEEEEEEecC
Confidence 33444444443 456899999984
No 117
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.98 E-value=9e-06 Score=85.58 Aligned_cols=99 Identities=14% Similarity=0.160 Sum_probs=65.0
Q ss_pred hhHHHHHHHHc---CCCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchh--hhccCCccEEEEcCCccCCCh
Q 001037 2 SMWQSELHKWL---PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR 76 (1179)
Q Consensus 2 sQW~~Ef~Kw~---P~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~--~L~ki~wdlVIIDEAHriKN~ 76 (1179)
.||.+++.+|. +++++.++.|........ .......++|+|+|++.+..... .+.-..+++|||||||++...
T Consensus 96 ~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~ 173 (220)
T 1t6n_A 96 FQISKEYERFSKYMPNVKVAVFFGGLSIKKDE--EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 173 (220)
T ss_dssp HHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH--HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSS
T ss_pred HHHHHHHHHHHhhCCCceEEEEeCCCChHHHH--HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcc
Confidence 58999999996 478888888865433221 12233467999999999876422 233346899999999998431
Q ss_pred -h--hHHHHHHHhhc-CCcEEEEeccCCCC
Q 001037 77 -E--SVLARDLDRYR-CQRRLLLTGTPLQN 102 (1179)
Q Consensus 77 -~--Sk~tkaL~~Lk-a~~RLLLTGTPiqN 102 (1179)
. ..+...+..+. ..++++|||||-.+
T Consensus 174 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 203 (220)
T 1t6n_A 174 LDMRRDVQEIFRMTPHEKQVMMFSATLSKE 203 (220)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESCCCTT
T ss_pred cCcHHHHHHHHHhCCCcCeEEEEEeecCHH
Confidence 1 22222333333 56789999998543
No 118
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.92 E-value=7.4e-06 Score=85.16 Aligned_cols=71 Identities=15% Similarity=0.259 Sum_probs=43.8
Q ss_pred hh-HHHHHHHHcC-CCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchhh--------hccCCccEEEEcCCc
Q 001037 2 SM-WQSELHKWLP-SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--------LSKVDWKYIIIDEAQ 71 (1179)
Q Consensus 2 sQ-W~~Ef~Kw~P-~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~~--------L~ki~wdlVIIDEAH 71 (1179)
.| |.++|.+|.+ .+.+..+.|......... .....++|+|+||+.+...... +....|++|||||||
T Consensus 96 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah 172 (216)
T 3b6e_A 96 EQLFRKEFQPFLKKWYRVIGLSGDTQLKISFP---EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECH 172 (216)
T ss_dssp HHHHHHTHHHHHTTTSCEEECCC---CCCCHH---HHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-
T ss_pred HHHHHHHHHHHhccCceEEEEeCCcccchhHH---hhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECch
Confidence 45 8899999986 578888887654322111 1112579999999998765433 233478999999999
Q ss_pred cCCC
Q 001037 72 RMKD 75 (1179)
Q Consensus 72 riKN 75 (1179)
++..
T Consensus 173 ~~~~ 176 (216)
T 3b6e_A 173 HTNK 176 (216)
T ss_dssp ----
T ss_pred hhcc
Confidence 9854
No 119
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.90 E-value=3e-05 Score=82.56 Aligned_cols=94 Identities=14% Similarity=0.124 Sum_probs=64.9
Q ss_pred hhHHHHHHHHc---CCCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchh--hhccCCccEEEEcCCccCCC-
Q 001037 2 SMWQSELHKWL---PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD- 75 (1179)
Q Consensus 2 sQW~~Ef~Kw~---P~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~--~L~ki~wdlVIIDEAHriKN- 75 (1179)
.||.++|.+|. +++++.++.|........ ......+|+|+|++.+..... .+....+++|||||||++..
T Consensus 106 ~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~ 181 (230)
T 2oxc_A 106 VQIHSVITAIGIKMEGLECHVFIGGTPLSQDK----TRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEE 181 (230)
T ss_dssp HHHHHHHHHHTTTSTTCCEEEECTTSCHHHHH----HHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHST
T ss_pred HHHHHHHHHHhcccCCceEEEEeCCCCHHHHH----HhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcC
Confidence 58999999986 467888888865433221 122468999999999876432 22233678999999999843
Q ss_pred --hhhHHHHHHHhhc-CCcEEEEeccC
Q 001037 76 --RESVLARDLDRYR-CQRRLLLTGTP 99 (1179)
Q Consensus 76 --~~Sk~tkaL~~Lk-a~~RLLLTGTP 99 (1179)
....+...+..+. ..++++||||+
T Consensus 182 ~~~~~~~~~i~~~~~~~~~~l~lSAT~ 208 (230)
T 2oxc_A 182 GSFQEQINWIYSSLPASKQMLAVSATY 208 (230)
T ss_dssp TSSHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred cchHHHHHHHHHhCCCCCeEEEEEecc
Confidence 3334444455554 55689999996
No 120
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.89 E-value=3.9e-05 Score=79.63 Aligned_cols=96 Identities=13% Similarity=0.062 Sum_probs=64.7
Q ss_pred hhHHHHHHHHc---CCCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchh--hhccCCccEEEEcCCccCCCh
Q 001037 2 SMWQSELHKWL---PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR 76 (1179)
Q Consensus 2 sQW~~Ef~Kw~---P~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~--~L~ki~wdlVIIDEAHriKN~ 76 (1179)
.||.+++.+++ ++..+..+.|......... .....++|+|+|++.+..... .+.-..+++|||||||++...
T Consensus 85 ~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~ 161 (206)
T 1vec_A 85 LQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ 161 (206)
T ss_dssp HHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTST
T ss_pred HHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhh
Confidence 58899998886 3678888887755443321 123578999999999865432 222336889999999997542
Q ss_pred --hhHHHHHHHhhc-CCcEEEEeccCC
Q 001037 77 --ESVLARDLDRYR-CQRRLLLTGTPL 100 (1179)
Q Consensus 77 --~Sk~tkaL~~Lk-a~~RLLLTGTPi 100 (1179)
...+...+..+. ...+++||||+-
T Consensus 162 ~~~~~l~~i~~~~~~~~~~l~~SAT~~ 188 (206)
T 1vec_A 162 DFVQIMEDIILTLPKNRQILLYSATFP 188 (206)
T ss_dssp TTHHHHHHHHHHSCTTCEEEEEESCCC
T ss_pred CcHHHHHHHHHhCCccceEEEEEeeCC
Confidence 223333444443 567899999983
No 121
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.86 E-value=2.8e-05 Score=82.81 Aligned_cols=95 Identities=20% Similarity=0.234 Sum_probs=64.7
Q ss_pred hhHHHHHHHHcCC--CcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchhh---hccCCccEEEEcCCccCCC-
Q 001037 2 SMWQSELHKWLPS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKD- 75 (1179)
Q Consensus 2 sQW~~Ef~Kw~P~--l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~~---L~ki~wdlVIIDEAHriKN- 75 (1179)
.||.+++.+++.. +.+..+.|........ .....++|+|+|++.+...... +....+++|||||||++.+
T Consensus 111 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~ 186 (236)
T 2pl3_A 111 YQTFEVLRKVGKNHDFSAGLIIGGKDLKHEA----ERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDM 186 (236)
T ss_dssp HHHHHHHHHHTTTSSCCEEEECCC--CHHHH----HHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHT
T ss_pred HHHHHHHHHHhCCCCeeEEEEECCCCHHHHH----HhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcC
Confidence 5899999999854 6788887765433221 1124689999999998765322 3334789999999999854
Q ss_pred -hhhHHHHHHHhhc-CCcEEEEeccCC
Q 001037 76 -RESVLARDLDRYR-CQRRLLLTGTPL 100 (1179)
Q Consensus 76 -~~Sk~tkaL~~Lk-a~~RLLLTGTPi 100 (1179)
....+...+..+. ...+++||||+-
T Consensus 187 ~~~~~~~~i~~~~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 187 GFADTMNAVIENLPKKRQTLLFSATQT 213 (236)
T ss_dssp TTHHHHHHHHHTSCTTSEEEEEESSCC
T ss_pred CcHHHHHHHHHhCCCCCeEEEEEeeCC
Confidence 2344445555553 455899999974
No 122
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.85 E-value=1.8e-05 Score=83.51 Aligned_cols=101 Identities=19% Similarity=0.135 Sum_probs=64.9
Q ss_pred hhHHHHHHHHcC------CCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchh--hhccCCccEEEEcCCccC
Q 001037 2 SMWQSELHKWLP------SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRM 73 (1179)
Q Consensus 2 sQW~~Ef~Kw~P------~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~--~L~ki~wdlVIIDEAHri 73 (1179)
.||.+++.+++. .+.+..+.|........ ......++|+|+|++.+..... .+.-..+++|||||||++
T Consensus 86 ~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~ 162 (219)
T 1q0u_A 86 TQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLM 162 (219)
T ss_dssp HHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHH
T ss_pred HHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHH
Confidence 589999998874 46777777765433221 1112467999999998876422 222336789999999998
Q ss_pred CC--hhhHHHHHHHhhc-CCcEEEEeccCCCCChHH
Q 001037 74 KD--RESVLARDLDRYR-CQRRLLLTGTPLQNDLKE 106 (1179)
Q Consensus 74 KN--~~Sk~tkaL~~Lk-a~~RLLLTGTPiqN~l~E 106 (1179)
.. ....+...+..+. ...+++||||+ ++.+.+
T Consensus 163 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~-~~~~~~ 197 (219)
T 1q0u_A 163 LDMGFITDVDQIAARMPKDLQMLVFSATI-PEKLKP 197 (219)
T ss_dssp HHTTCHHHHHHHHHTSCTTCEEEEEESCC-CGGGHH
T ss_pred hhhChHHHHHHHHHhCCcccEEEEEecCC-CHHHHH
Confidence 53 2233444444553 45689999997 334443
No 123
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=97.83 E-value=0.00022 Score=89.59 Aligned_cols=130 Identities=14% Similarity=0.193 Sum_probs=100.0
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHH----------------------------------------
Q 001037 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ---------------------------------------- 304 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~---------------------------------------- 304 (1179)
...|+.++..-+.+....|.-|||+|......+.|..+|.
T Consensus 425 ~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (997)
T 2ipc_A 425 EKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQ 504 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhcccc
Confidence 3568888888888888899999999999999999999998
Q ss_pred ------------------------------------HcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhcc
Q 001037 305 ------------------------------------WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 348 (1179)
Q Consensus 305 ------------------------------------~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGge 348 (1179)
..||++-+++.... +.-.++|.+=- ..-.+-++|..+|.
T Consensus 505 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNAK~h-e~EAeIIAqAG----~~GaVTIATNMAGR 579 (997)
T 2ipc_A 505 LKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHH-AREAEIVAQAG----RSKTVTIATNMAGR 579 (997)
T ss_dssp CSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECSSSH-HHHHHHHHTTT----STTCEEEECSSTTT
T ss_pred ccccccccccccccccccccccccccchhhhhhHHHHcCCCeeeccccch-HHHHHHHHhcC----CCCeEEEEecccCC
Confidence 67888888887653 22235555532 22236778899999
Q ss_pred CCCCccc-------------------c-----------------------------------------------------
Q 001037 349 GLNLQSA-------------------D----------------------------------------------------- 356 (1179)
Q Consensus 349 GLNLQ~A-------------------d----------------------------------------------------- 356 (1179)
|.|+.-. +
T Consensus 580 GTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~G 659 (997)
T 2ipc_A 580 GTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALG 659 (997)
T ss_dssp TSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CcCeecCCCHHHHHHHHHHhhcccccccccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcC
Confidence 9997632 2
Q ss_pred --eeeecCCCCCcchHHHHhhcccccCCcceEEEEEEEeehhhhhhh
Q 001037 357 --TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSH 401 (1179)
Q Consensus 357 --tVIi~D~pWNP~~~eQAiGRIhRIGQkkeV~VyrLvaVEE~I~~~ 401 (1179)
+||--..+-|...+.|..||++|.|..-...+| +++|+.++..
T Consensus 660 GLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~--LSLeDdLmr~ 704 (997)
T 2ipc_A 660 GLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFY--VSFDDDLMRL 704 (997)
T ss_dssp CCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEE--EESSSHHHHH
T ss_pred CeEEEeccCCchHHHHHHHhcccccCCCCCCeEEE--EECChHHHHh
Confidence 788889999999999999999999998876544 3466666543
No 124
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.70 E-value=5.7e-05 Score=79.54 Aligned_cols=95 Identities=14% Similarity=0.076 Sum_probs=59.9
Q ss_pred hhHHHHHHHHcC--CCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchh--hhccCCccEEEEcCCccCCC--
Q 001037 2 SMWQSELHKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD-- 75 (1179)
Q Consensus 2 sQW~~Ef~Kw~P--~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~--~L~ki~wdlVIIDEAHriKN-- 75 (1179)
.||.+++.++++ ++.+..+.|........ ......+|+|+|++.+..... .+....+++|||||||++..
T Consensus 96 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~ 171 (224)
T 1qde_A 96 LQIQKVVMALAFHMDIKVHACIGGTSFVEDA----EGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG 171 (224)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECC--------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTT
T ss_pred HHHHHHHHHHhcccCceEEEEeCCcchHHHH----hcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhh
Confidence 589999999975 56777777765432221 112348999999999875422 22234689999999999743
Q ss_pred hhhHHHHHHHhh-cCCcEEEEeccCC
Q 001037 76 RESVLARDLDRY-RCQRRLLLTGTPL 100 (1179)
Q Consensus 76 ~~Sk~tkaL~~L-ka~~RLLLTGTPi 100 (1179)
....+...+..+ ...++++||||+-
T Consensus 172 ~~~~l~~i~~~~~~~~~~i~lSAT~~ 197 (224)
T 1qde_A 172 FKEQIYQIFTLLPPTTQVVLLSATMP 197 (224)
T ss_dssp CHHHHHHHHHHSCTTCEEEEEESSCC
T ss_pred hHHHHHHHHHhCCccCeEEEEEeecC
Confidence 223344444444 3456899999984
No 125
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.69 E-value=7e-05 Score=80.19 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=60.2
Q ss_pred hhHHHHHHHHcC--CCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchh--hhccCCccEEEEcCCccCC--C
Q 001037 2 SMWQSELHKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMK--D 75 (1179)
Q Consensus 2 sQW~~Ef~Kw~P--~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~--~L~ki~wdlVIIDEAHriK--N 75 (1179)
.||.++|.+++. .+.+..+.|........ .......++|+|+|++.+..... .+....+++|||||||++. +
T Consensus 112 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~ 189 (237)
T 3bor_A 112 QQIQKVILALGDYMGATCHACIGGTNVRNEM--QKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRG 189 (237)
T ss_dssp HHHHHHHHHHTTTTTCCEEEECC---------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTT
T ss_pred HHHHHHHHHHhhhcCceEEEEECCCchHHHH--HHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccC
Confidence 589999999985 45666666654333221 11223348999999998765422 2333468999999999973 3
Q ss_pred hhhHHHHHHHhhc-CCcEEEEeccCC
Q 001037 76 RESVLARDLDRYR-CQRRLLLTGTPL 100 (1179)
Q Consensus 76 ~~Sk~tkaL~~Lk-a~~RLLLTGTPi 100 (1179)
....+...+..+. ....++||||+-
T Consensus 190 ~~~~l~~i~~~~~~~~~~i~~SAT~~ 215 (237)
T 3bor_A 190 FKDQIYEIFQKLNTSIQVVLLSATMP 215 (237)
T ss_dssp CHHHHHHHHHHSCTTCEEEEECSSCC
T ss_pred cHHHHHHHHHhCCCCCeEEEEEEecC
Confidence 4445555555563 456799999984
No 126
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.67 E-value=6.8e-05 Score=81.27 Aligned_cols=96 Identities=19% Similarity=0.207 Sum_probs=64.9
Q ss_pred hhHHHHHHHHcC--CCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchhh---hccCCccEEEEcCCccCCC-
Q 001037 2 SMWQSELHKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKD- 75 (1179)
Q Consensus 2 sQW~~Ef~Kw~P--~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~~---L~ki~wdlVIIDEAHriKN- 75 (1179)
.||.++|.+++. ++.+..+.|........ ......++|+|+|++.+...... +.-..+++|||||||++.+
T Consensus 125 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~ 201 (249)
T 3ber_A 125 FQISEQFEALGSSIGVQSAVIVGGIDSMSQS---LALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNM 201 (249)
T ss_dssp HHHHHHHHHHHGGGTCCEEEECTTSCHHHHH---HHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHT
T ss_pred HHHHHHHHHHhccCCeeEEEEECCCChHHHH---HHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhcc
Confidence 589999999975 57777777764433221 12235789999999998765332 2233688999999999754
Q ss_pred -hhhHHHHHHHhhc-CCcEEEEeccCC
Q 001037 76 -RESVLARDLDRYR-CQRRLLLTGTPL 100 (1179)
Q Consensus 76 -~~Sk~tkaL~~Lk-a~~RLLLTGTPi 100 (1179)
....+...+..+. ...+++||||+-
T Consensus 202 ~~~~~l~~i~~~~~~~~~~l~~SAT~~ 228 (249)
T 3ber_A 202 DFETEVDKILKVIPRDRKTFLFSATMT 228 (249)
T ss_dssp TCHHHHHHHHHSSCSSSEEEEEESSCC
T ss_pred ChHHHHHHHHHhCCCCCeEEEEeccCC
Confidence 2233444444443 566899999974
No 127
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.66 E-value=6.9e-05 Score=80.72 Aligned_cols=96 Identities=24% Similarity=0.257 Sum_probs=62.6
Q ss_pred hhHHHHHHHHcC--CCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchhh--hccCCccEEEEcCCccCCC--
Q 001037 2 SMWQSELHKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD-- 75 (1179)
Q Consensus 2 sQW~~Ef~Kw~P--~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~~--L~ki~wdlVIIDEAHriKN-- 75 (1179)
.||.+++.+|.. .+.+..+.|........ ......++|+|+|++.+...... +.--.+++|||||||++..
T Consensus 114 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~ 190 (253)
T 1wrb_A 114 IQILSESQKFSLNTPLRSCVVYGGADTHSQI---REVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMG 190 (253)
T ss_dssp HHHHHHHHHHHTTSSCCEEEECSSSCSHHHH---HHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTT
T ss_pred HHHHHHHHHHhccCCceEEEEECCCCHHHHH---HHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCc
Confidence 589999999975 46677777654333221 11234689999999998765321 2233678999999999743
Q ss_pred hhhHHHHHHHhhc-----CCcEEEEeccCC
Q 001037 76 RESVLARDLDRYR-----CQRRLLLTGTPL 100 (1179)
Q Consensus 76 ~~Sk~tkaL~~Lk-----a~~RLLLTGTPi 100 (1179)
....+...+..+. ...+++|||||-
T Consensus 191 ~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 191 FEPQIRKIIEESNMPSGINRQTLMFSATFP 220 (253)
T ss_dssp CHHHHHHHHHSSCCCCGGGCEEEEEESSCC
T ss_pred hHHHHHHHHhhccCCCCCCcEEEEEEEeCC
Confidence 2334444444332 345899999974
No 128
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.55 E-value=0.00014 Score=77.80 Aligned_cols=96 Identities=20% Similarity=0.211 Sum_probs=60.6
Q ss_pred hhHHHHHHHHcC--CCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchh----hhccCCccEEEEcCCccCCC
Q 001037 2 SMWQSELHKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS----KLSKVDWKYIIIDEAQRMKD 75 (1179)
Q Consensus 2 sQW~~Ef~Kw~P--~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~----~L~ki~wdlVIIDEAHriKN 75 (1179)
.||.+++.+++. ++.+..+.|........ .......++|+|+|++.+..... .+.-..+.+|||||||++..
T Consensus 112 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~ 189 (245)
T 3dkp_A 112 SQIHRELIKISEGTGFRIHMIHKAAVAAKKF--GPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFE 189 (245)
T ss_dssp HHHHHHHHHHTTTSCCCEECCCHHHHHHTTT--STTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHH
T ss_pred HHHHHHHHHHhcccCceEEEEecCccHHHHh--hhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcc
Confidence 589999999986 45565555543322211 11224568999999999876432 12333688999999999843
Q ss_pred -----hhhHHHHHHHhh--cCCcEEEEeccC
Q 001037 76 -----RESVLARDLDRY--RCQRRLLLTGTP 99 (1179)
Q Consensus 76 -----~~Sk~tkaL~~L--ka~~RLLLTGTP 99 (1179)
....+...+..+ ...++++||||+
T Consensus 190 ~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 190 DGKTGFRDQLASIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp HC--CHHHHHHHHHHHCCCTTCEEEEEESSC
T ss_pred cccccHHHHHHHHHHhcCCCCcEEEEEeccC
Confidence 222333333333 245689999998
No 129
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.51 E-value=0.00016 Score=76.48 Aligned_cols=95 Identities=18% Similarity=0.238 Sum_probs=60.4
Q ss_pred hhHHHHHHHHc-CCCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchh--hhccCCccEEEEcCCccCCC--h
Q 001037 2 SMWQSELHKWL-PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD--R 76 (1179)
Q Consensus 2 sQW~~Ef~Kw~-P~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~--~L~ki~wdlVIIDEAHriKN--~ 76 (1179)
.||.+++.++. .++.+..+.|........ ......++|+|+|++.+..... .+.-..+++|||||||++.. .
T Consensus 108 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~ 184 (228)
T 3iuy_A 108 LHVEAECSKYSYKGLKSICIYGGRNRNGQI---EDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEF 184 (228)
T ss_dssp HHHHHHHHHHCCTTCCEEEECC------CH---HHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTC
T ss_pred HHHHHHHHHhcccCceEEEEECCCChHHHH---HHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccch
Confidence 58999999986 567777777654333221 1123468999999999876422 22233588999999999743 2
Q ss_pred hhHHHHHHHhhc-CCcEEEEeccC
Q 001037 77 ESVLARDLDRYR-CQRRLLLTGTP 99 (1179)
Q Consensus 77 ~Sk~tkaL~~Lk-a~~RLLLTGTP 99 (1179)
.......+..+. ....++||||.
T Consensus 185 ~~~~~~i~~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 185 EPQIRKILLDVRPDRQTVMTSATW 208 (228)
T ss_dssp HHHHHHHHHHSCSSCEEEEEESCC
T ss_pred HHHHHHHHHhCCcCCeEEEEEeeC
Confidence 334444455553 45679999995
No 130
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.25 E-value=0.00053 Score=74.77 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=61.9
Q ss_pred hhHHHHHHHHcC--CCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchhh---hccCCccEEEEcCCccCCC-
Q 001037 2 SMWQSELHKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKD- 75 (1179)
Q Consensus 2 sQW~~Ef~Kw~P--~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~~---L~ki~wdlVIIDEAHriKN- 75 (1179)
.||..+|.+++. ...+..+.|......... .....++|+|+|++.+...... +.--.+.+|||||||++-.
T Consensus 140 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~ 216 (262)
T 3ly5_A 140 MQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDV 216 (262)
T ss_dssp HHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHT
T ss_pred HHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhh
Confidence 589999999875 356666666543332211 1123589999999988764322 2223578999999999743
Q ss_pred -hhhHHHHHHHhhc-CCcEEEEeccCC
Q 001037 76 -RESVLARDLDRYR-CQRRLLLTGTPL 100 (1179)
Q Consensus 76 -~~Sk~tkaL~~Lk-a~~RLLLTGTPi 100 (1179)
....+...+..+. ...+++||||+-
T Consensus 217 ~~~~~l~~i~~~~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 217 GFEEELKQIIKLLPTRRQTMLFSATQT 243 (262)
T ss_dssp TCHHHHHHHHHHSCSSSEEEEECSSCC
T ss_pred hHHHHHHHHHHhCCCCCeEEEEEecCC
Confidence 2333444444553 456899999974
No 131
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=97.23 E-value=0.00082 Score=72.00 Aligned_cols=95 Identities=16% Similarity=0.143 Sum_probs=60.1
Q ss_pred hhHHHHHHHHc--CCCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchh--hhccCCccEEEEcCCccCCC--
Q 001037 2 SMWQSELHKWL--PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD-- 75 (1179)
Q Consensus 2 sQW~~Ef~Kw~--P~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~--~L~ki~wdlVIIDEAHriKN-- 75 (1179)
.||.+++.+++ .++.+..+.|......... .....++|+|+|++.+..... .+.-..+.+|||||||++-.
T Consensus 116 ~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~ 192 (242)
T 3fe2_A 116 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIR---DLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMG 192 (242)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH---HHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTT
T ss_pred HHHHHHHHHHHhhcCceEEEEECCCChHHHHH---HhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhC
Confidence 47888888875 3567777776543332211 112358999999998875432 22233678999999999743
Q ss_pred hhhHHHHHHHhh-cCCcEEEEeccC
Q 001037 76 RESVLARDLDRY-RCQRRLLLTGTP 99 (1179)
Q Consensus 76 ~~Sk~tkaL~~L-ka~~RLLLTGTP 99 (1179)
........+..+ .....+++|||.
T Consensus 193 ~~~~~~~i~~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 193 FEPQIRKIVDQIRPDRQTLMWSATW 217 (242)
T ss_dssp CHHHHHHHHTTSCSSCEEEEEESCC
T ss_pred cHHHHHHHHHhCCccceEEEEEeec
Confidence 222333333344 345689999996
No 132
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.53 E-value=0.00028 Score=69.12 Aligned_cols=54 Identities=17% Similarity=0.267 Sum_probs=48.0
Q ss_pred Ccccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 667 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 667 ~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
+|+.++.|| .+|+...+|+||++|++||+++. |..+|+.|+|....+-..|+.+
T Consensus 32 ~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~l 86 (123)
T 2dat_A 32 SGRQLSEVFIQLPSRKELPEYYELIRKPVDFKK-IKERIRNHKYRSLGDLEKDVML 86 (123)
T ss_dssp SSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHH-HHHHHTTTCCCSHHHHHHHHHH
T ss_pred cCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHH-HHHHHhCCCCCCHHHHHHHHHH
Confidence 578899999 89999999999999999999998 9999999999987776666553
No 133
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=96.27 E-value=0.0029 Score=70.55 Aligned_cols=103 Identities=16% Similarity=0.145 Sum_probs=61.4
Q ss_pred hhHHHHHHHHc---CCCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchh---hhccCCccEEEEcCCccCCC
Q 001037 2 SMWQSELHKWL---PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKD 75 (1179)
Q Consensus 2 sQW~~Ef~Kw~---P~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~---~L~ki~wdlVIIDEAHriKN 75 (1179)
.|+...+.++. +.+.+.++.|....... .....+|+|+|++.+..... .+.--...+|||||||++-.
T Consensus 176 ~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~ 249 (300)
T 3fmo_B 176 LQTGKVIEQMGKFYPELKLAYAVRGNKLERG------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIA 249 (300)
T ss_dssp HHHHHHHHHHTTTSTTCCEEEESTTCCCCTT------CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHH
T ss_pred HHHHHHHHHHHhhCCCcEEEEEeCCccHhhh------hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhh
Confidence 35666666664 56777777765432211 13467899999999876542 22223678999999999742
Q ss_pred ---hhhHHHHHHHhh-cCCcEEEEeccCCCCChHHHHHHHhhh
Q 001037 76 ---RESVLARDLDRY-RCQRRLLLTGTPLQNDLKELWSLLNLL 114 (1179)
Q Consensus 76 ---~~Sk~tkaL~~L-ka~~RLLLTGTPiqN~l~EL~sLL~fL 114 (1179)
........+..+ .....+++|||+-. ++..+...+
T Consensus 250 ~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~----~v~~~a~~~ 288 (300)
T 3fmo_B 250 TQGHQDQSIRIQRMLPRNCQMLLFSATFED----SVWKFAQKV 288 (300)
T ss_dssp STTHHHHHHHHHTTSCTTCEEEEEESCCCH----HHHHHHHHH
T ss_pred ccCcHHHHHHHHHhCCCCCEEEEEeccCCH----HHHHHHHHH
Confidence 112222222233 34568999999743 444444433
No 134
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=95.84 E-value=0.014 Score=70.41 Aligned_cols=109 Identities=13% Similarity=0.140 Sum_probs=67.1
Q ss_pred HHHHHHHHHHh-hcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEE-eeehhhhc
Q 001037 270 WILDRILIKLQ-RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF-LLSIRAAG 347 (1179)
Q Consensus 270 ~~L~~IL~el~-~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VL-LlST~AGg 347 (1179)
..+.+.|..+. ..+.++|||+.....++.+...|.. +. +.+.|.. .+|.++++.|+. ... |+ .+.+....
T Consensus 370 ~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~-~~~--il~~V~~~~~~ 441 (540)
T 2vl7_A 370 PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKT-GKY--LVMLVMRAKES 441 (540)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHT-SCC--EEEEEC-----
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhc-CCe--EEEEEecCcee
Confidence 44555555554 3466899999888888888887754 33 3456654 468899999986 222 33 23789999
Q ss_pred cCCCCcc----cceeeecCCCCCcc------------------------------hHHHHhhcccccCCcceE
Q 001037 348 RGLNLQS----ADTVIIYDPDPNPK------------------------------NEEQAVARAHRIGQKREV 386 (1179)
Q Consensus 348 eGLNLQ~----AdtVIi~D~pWNP~------------------------------~~eQAiGRIhRIGQkkeV 386 (1179)
||||+.. +..||++.+|+-+. ...|++||+-|--...-+
T Consensus 442 EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~ 514 (540)
T 2vl7_A 442 EGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVK 514 (540)
T ss_dssp ----------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCE
T ss_pred cceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEE
Confidence 9999996 89999999997433 245999999997666555
No 135
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=95.72 E-value=0.00093 Score=65.64 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=49.2
Q ss_pred CCcccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 666 SNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 666 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
.+|+.++.|| .+|+...+|+||++|++||+++. +..+|+.|+|....+-..|+.+
T Consensus 27 ~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~l 82 (126)
T 3mqm_A 27 SSRQALAAPLLNLPPKKKNADYYEKISDPLDLIT-IEKQILTGYYKTVEAFDADMLK 82 (126)
T ss_dssp TTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHH-HHHHHHHTCCCSHHHHHHHHHH
T ss_pred cCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHH
Confidence 4679999999 99999999999999999999988 8999999999988777777643
No 136
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=95.59 E-value=0.00095 Score=65.07 Aligned_cols=54 Identities=13% Similarity=0.209 Sum_probs=48.6
Q ss_pred CCcccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCccccc
Q 001037 666 SNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQ 720 (1179)
Q Consensus 666 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1179)
.+|+.++.|| .+|+...+|+||++|++||+++. +..+|+.|+|....+-..|+.
T Consensus 26 ~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~ 80 (120)
T 3ljw_A 26 PSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKT-IAQRIQNGSYKSIHAMAKDID 80 (120)
T ss_dssp TTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHHTCCCSHHHHHHHHH
T ss_pred cCCCcccHHhcCCCCcccCCChHHHcCCCCCHHH-HHHHHccCCCCCHHHHHHHHH
Confidence 4789999999 99999999999999999999998 999999999988777666654
No 137
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=95.58 E-value=0.0011 Score=65.62 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=48.9
Q ss_pred CCCcccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCccccc
Q 001037 665 SSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQ 720 (1179)
Q Consensus 665 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1179)
..+++.++.|| .+|+...+|+||++|++||+++. |..+|+.|+|....+-..|+.
T Consensus 34 d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~t-I~~kL~~~~Y~s~~ef~~Dv~ 89 (130)
T 3k2j_A 34 NNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQ-IRTKLKNQEYETLDHLECDLN 89 (130)
T ss_dssp CSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHH
T ss_pred cccCCCccHhhcCCCChhhCccHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHH
Confidence 34689999999 99999999999999999999998 999999999988777666654
No 138
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=95.45 E-value=0.0011 Score=65.11 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=49.3
Q ss_pred CCcccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 666 SNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 666 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
.+|+.++.|| .+|+...+|+||++|++||+++. +..+|+.|+|....+-..|+.+
T Consensus 33 ~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~l 88 (124)
T 3mb4_A 33 KRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEK-IRSHMMANKYQDIDSMVEDFVM 88 (124)
T ss_dssp TTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHH
T ss_pred ccCCcccHHhhcCCCccccCCHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHH
Confidence 4689999999 99999999999999999999998 9999999999988777777643
No 139
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=95.28 E-value=0.0015 Score=63.27 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=48.5
Q ss_pred CCcccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCccccc
Q 001037 666 SNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQ 720 (1179)
Q Consensus 666 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1179)
.+|+.++.|| .+|+...+|+||++|++||+++. +..+|+.|+|....+-..|+.
T Consensus 23 ~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~ 77 (116)
T 3iu5_A 23 EQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMK-IQQKLKMEEYDDVNLLTADFQ 77 (116)
T ss_dssp TTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHH
T ss_pred cCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHH-HHHHHHcCCCCCHHHHHHHHH
Confidence 3678999999 99999999999999999999998 999999999988877776664
No 140
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=94.97 E-value=0.002 Score=63.69 Aligned_cols=55 Identities=18% Similarity=0.261 Sum_probs=48.5
Q ss_pred CCCcccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCccccc
Q 001037 665 SSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQ 720 (1179)
Q Consensus 665 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1179)
+.+++.++.|| .+|+...+|+||.+|++||+++. |..+|+.|+|....+-..|+.
T Consensus 29 ~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~ 84 (129)
T 2grc_A 29 SSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKK-IKERIRNHKYRSLNDLEKDVM 84 (129)
T ss_dssp TTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHH
T ss_pred ccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHH
Confidence 34789999999 89999999999999999999998 999999999988776666654
No 141
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=94.96 E-value=0.0023 Score=64.73 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=50.4
Q ss_pred CCCcccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 665 SSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 665 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
+.+++.++.|| .+|+...+|+||++|++||+|+. |..+|+.|+|....+...|+.+
T Consensus 42 ~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~l 98 (150)
T 3tlp_A 42 PGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKI-IEHNIRNDKYAGEEGMIEDMKL 98 (150)
T ss_dssp TTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHH
T ss_pred cccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHH
Confidence 44689999999 99999999999999999999998 9999999999998887777643
No 142
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=94.69 E-value=0.0038 Score=63.52 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=51.8
Q ss_pred ccccccc-CCCCccc--cCchhhhhcCCCCcccccccccccccccccCCCccccc----------cCCCcccc-------
Q 001037 669 RRLTQIV-SPVSPQK--FGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQ----------QSGSWTHD------- 728 (1179)
Q Consensus 669 ~~~~~~~-~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~------- 728 (1179)
...+.|| .+|+..+ +|+||++|++||+++. |..+|+.|+|....+-..|+. ..||+++.
T Consensus 47 ~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~t-I~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~i~~~A~~L~~ 125 (154)
T 4alg_A 47 HQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGT-IKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEK 125 (154)
T ss_dssp STTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred CcCchhhcCCCChhhccCCCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3568999 8888874 9999999999999988 999999999998877666653 34555442
Q ss_pred ---------CCcCccccccchhhhccc
Q 001037 729 ---------RDEGEDEQVLQPKIKRKR 746 (1179)
Q Consensus 729 ---------~~~~~~~~~~~~~~~~~~ 746 (1179)
.++..+..+.+||.|+||
T Consensus 126 ~f~~~~~~l~~~~~e~~~~~~k~k~~~ 152 (154)
T 4alg_A 126 IFLQKVASMPQEEQELVVTIPKNSHKK 152 (154)
T ss_dssp HHHHHHTTSCSSCCBCCC---------
T ss_pred HHHHHHHHCCchhccccCCCCCcCCCC
Confidence 344555555668887776
No 143
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.63 E-value=0.034 Score=59.27 Aligned_cols=61 Identities=13% Similarity=0.080 Sum_probs=38.8
Q ss_pred CCCCEEEEcHHHHHhchhhhccCCccEEEEcCCccCCChhhHHH-HHHHhh----cCCcEEEEeccCC
Q 001037 38 LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLA-RDLDRY----RCQRRLLLTGTPL 100 (1179)
Q Consensus 38 ~~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriKN~~Sk~t-kaL~~L----ka~~RLLLTGTPi 100 (1179)
...+|+|+|.+.+.+.... .-.++++|||||||++. ...... ..+..+ .....+++|||+-
T Consensus 154 ~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~-~~~~~~~~~l~~i~~~~~~~~~il~SAT~~ 219 (235)
T 3llm_A 154 PHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERD-INTDFLLVVLRDVVQAYPEVRIVLMSATID 219 (235)
T ss_dssp SSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCC-HHHHHHHHHHHHHHHHCTTSEEEEEECSSC
T ss_pred CCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCC-cchHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence 3467999999888765432 12367899999999841 222222 222222 3456899999974
No 144
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=93.18 E-value=0.0098 Score=57.13 Aligned_cols=50 Identities=16% Similarity=0.034 Sum_probs=43.6
Q ss_pred cccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCccccc
Q 001037 670 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQ 720 (1179)
Q Consensus 670 ~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1179)
..+.|| .+|+...+|+|++++++||+++. +..+|+.|+|....+-..|+.
T Consensus 23 ~~~~~F~~pvd~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~ 73 (112)
T 3d7c_A 23 PSAWPFMEPVKKSEAPDYYEVIRFPIDLKT-MTERLRSRYYVTRKLFVADLQ 73 (112)
T ss_dssp GGGGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHH
T ss_pred CCchhhcCCCCcccccCHHHHccCCcCHHH-HHHHHcCCCCcCHHHHHHHHH
Confidence 467899 99999999999999999999988 999999999988766666654
No 145
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=93.09 E-value=0.01 Score=57.34 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=43.9
Q ss_pred cccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCccccc
Q 001037 670 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQ 720 (1179)
Q Consensus 670 ~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1179)
..+.|| .+|+...+|+|+++|++||+++. +..+|+.|+|....+-..|+.
T Consensus 29 ~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~ 79 (117)
T 3g0l_A 29 EDAWPFLLPVNLKLVPGYKKVIKKPMDFST-IREKLSSGQYPNLETFALDVR 79 (117)
T ss_dssp TTCGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHH
T ss_pred CCchhhcCcCChhhcCChHHHcCCCCCHHH-HHHHHhCCCCCCHHHHHHHHH
Confidence 457899 89999999999999999999988 999999999988777666654
No 146
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=93.05 E-value=0.011 Score=58.36 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=44.9
Q ss_pred cccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 670 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 670 ~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
..+.|| .+|+...+|+||.+|++||+++. +..+|+.|+|....+-..|+..
T Consensus 26 ~~~~~F~~pv~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~l 77 (130)
T 3dai_A 26 KRFRVFTKPVDPDEVPDYVTVIKQPMDLSS-VISKIDLHKYLTVKDYLRDIDL 77 (130)
T ss_dssp GGGGGGSSCCCTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHH
T ss_pred CccHhhcCCCChhhcCCHHHHcCCCCCHHH-HHHHHhCCCCCCHHHHHHHHHH
Confidence 347899 89999999999999999999998 8999999999988877777654
No 147
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=92.86 E-value=0.012 Score=57.53 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=44.7
Q ss_pred ccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 669 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 669 ~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
+..+.|| .+|+...+|+|+++|++||+++. +..+|+.|+|....+-..|+.+
T Consensus 28 ~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~l 80 (121)
T 1e6i_A 28 HAAAWPFLQPVNKEEVPDYYDFIKEPMDLST-MEIKLESNKYQKMEDFIYDARL 80 (121)
T ss_dssp STTCGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHH
T ss_pred CCCchhhCCCCChhhCcCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHH
Confidence 4577899 99999999999999999999998 9999999999887766666543
No 148
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=92.75 E-value=0.012 Score=56.80 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=43.1
Q ss_pred ccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCccccc
Q 001037 671 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQ 720 (1179)
Q Consensus 671 ~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1179)
.+.|| .+|+...+|+|+++|++||+++. +..+|+.|+|....+-..|+.
T Consensus 33 ~s~~F~~pv~~~~~pdY~~~I~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~ 82 (116)
T 3nxb_A 33 DSWPFLEPVDESYAPNYYQIIKAPMDISS-MEKKLNGGLYCTKEEFVNDMK 82 (116)
T ss_dssp TCGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHH
T ss_pred CcHhhcCcCChhhccChHHHcCCCCCHHH-HHHHHcCCCCCCHHHHHHHHH
Confidence 46789 89999999999999999999998 999999999988777666654
No 149
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.74 E-value=0.012 Score=57.51 Aligned_cols=50 Identities=18% Similarity=0.122 Sum_probs=43.6
Q ss_pred ccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 671 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 671 ~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
.+.|| .+|+...+|+||++|++||+++. |..+|+.|+|....+-..|+.+
T Consensus 24 ~~~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~l 74 (121)
T 2d9e_A 24 TGNIFSEPVPLSEVPDYLDHIKKPMDFFT-MKQNLEAYRYLNFDDFEEDFNL 74 (121)
T ss_dssp SSCSSSSCCCTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHH
T ss_pred ccHhhCCcCCccccCCHHHHcCCCcCHHH-HHHHHhcCCCCCHHHHHHHHHH
Confidence 56889 89999999999999999999998 9999999999987776666543
No 150
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=92.28 E-value=0.29 Score=60.17 Aligned_cols=118 Identities=12% Similarity=0.157 Sum_probs=70.2
Q ss_pred HHHHHHHHHHh-hcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeeh--hhh
Q 001037 270 WILDRILIKLQ-RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI--RAA 346 (1179)
Q Consensus 270 ~~L~~IL~el~-~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST--~AG 346 (1179)
..+.+.|..+. ..+..+|||+..-..++.+.+.|. .+..- ...+++..++..++++|. +.+. +|+++ ...
T Consensus 434 ~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~~~---vL~~v~~gsf 506 (620)
T 4a15_A 434 DRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RDHG---TIFAVSGGRL 506 (620)
T ss_dssp HHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TSCC---EEEEETTSCC
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cCCc---EEEEEecCce
Confidence 34444444443 345567777766677777777665 23333 444455578999999998 3333 45554 589
Q ss_pred ccCCCCc--ccceeeecCCCCCc-------------------c----------hHHHHhhcccccCCcceEEEEEEEeeh
Q 001037 347 GRGLNLQ--SADTVIIYDPDPNP-------------------K----------NEEQAVARAHRIGQKREVKVIYMEAVV 395 (1179)
Q Consensus 347 geGLNLQ--~AdtVIi~D~pWNP-------------------~----------~~eQAiGRIhRIGQkkeV~VyrLvaVE 395 (1179)
.||||+. .+..||+.-+|+-+ . ...|++||+-|--..+-|.++ ++
T Consensus 507 ~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~l----lD 582 (620)
T 4a15_A 507 SEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVI----LD 582 (620)
T ss_dssp --------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEE----EC
T ss_pred eccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEE----Ec
Confidence 9999999 48899999888632 1 125999999997666665333 35
Q ss_pred hhh
Q 001037 396 DKI 398 (1179)
Q Consensus 396 E~I 398 (1179)
.++
T Consensus 583 ~R~ 585 (620)
T 4a15_A 583 KRA 585 (620)
T ss_dssp GGG
T ss_pred cch
Confidence 555
No 151
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=92.26 E-value=0.016 Score=59.18 Aligned_cols=51 Identities=10% Similarity=0.029 Sum_probs=44.4
Q ss_pred ccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCccccc
Q 001037 669 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQ 720 (1179)
Q Consensus 669 ~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1179)
...+.|| .+|+...+|+||.+|++||+++. |..+|+.|+|....+-..|+.
T Consensus 45 ~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~t-I~~kl~~~~Y~s~~ef~~Dv~ 96 (158)
T 3uv4_A 45 VPDSWPFHHPVNKKFVPDYYKVIVNPMDLET-IRKNISKHKYQSRESFLDDVN 96 (158)
T ss_dssp STTCGGGTSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHH
T ss_pred CCCchhhcCcCChhhcccHHHHcCCccCHHH-HHHHHHcCCCCCHHHHHHHHH
Confidence 4457799 89999999999999999999988 999999999998777666664
No 152
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=92.05 E-value=0.017 Score=55.99 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=42.2
Q ss_pred ccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 671 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 671 ~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
.+.|| .+|+...+|+||++|++||+++. +..+|+.|+|....+-..|+.+
T Consensus 25 ~~~~F~~PVd~~~~pdY~~iIk~PMDL~t-I~~kl~~~~Y~s~~ef~~Dv~L 75 (117)
T 2i7k_A 25 PSAFFSFPVTDFIAPGYSMIIKHPMDFST-MKEKIKNNDYQSIEELKDNFKL 75 (117)
T ss_dssp GGGTSSSCCCTTTSSSHHHHCSCCCCHHH-HHHHHTTTSCCSHHHHHHHHHH
T ss_pred ccHHhcCCCCccccCCHHHHhCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHH
Confidence 35678 77788889999999999999998 9999999999887766666543
No 153
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=92.01 E-value=0.018 Score=56.24 Aligned_cols=49 Identities=12% Similarity=0.197 Sum_probs=43.3
Q ss_pred ccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCccccc
Q 001037 671 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQ 720 (1179)
Q Consensus 671 ~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1179)
.+.|| .+|+...+|+||.+|++||+++. +..+|+.|+|....+-..|+.
T Consensus 27 ~s~~F~~pv~~~~~pdY~~~I~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~ 76 (123)
T 3q2e_A 27 DSEPFRQPVDLVEYPDYRDIIDTPMDFGT-VRETLDAGNYDSPLEFCKDIR 76 (123)
T ss_dssp GGGGGSSCCCTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHH
T ss_pred CcHhhcCCCChhhcCCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHH
Confidence 47899 89999999999999999999988 999999999988777666654
No 154
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=91.93 E-value=0.017 Score=56.56 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=42.8
Q ss_pred ccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCccccc
Q 001037 671 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQ 720 (1179)
Q Consensus 671 ~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1179)
.+.|| .+|+...+|+||++|++||+++. +..+|+.|+|....+-..|+.
T Consensus 30 ~~~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~ 79 (123)
T 3hme_A 30 PHGFFAFPVTDAIAPGYSMIIKHPMDFGT-MKDKIVANEYKSVTEFKADFK 79 (123)
T ss_dssp TTCSSSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHH
T ss_pred ccHhhcCCCChhhccCHHHHCCCCCCHHH-HHHHhccCCCCCHHHHHHHHH
Confidence 35688 88889999999999999999998 999999999988777766664
No 155
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=91.83 E-value=0.018 Score=57.19 Aligned_cols=49 Identities=14% Similarity=0.222 Sum_probs=43.8
Q ss_pred ccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCccccc
Q 001037 671 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQ 720 (1179)
Q Consensus 671 ~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1179)
.+.|| .+|+...+|+||++|++||+++. |..+|+.|+|....+-..|+.
T Consensus 38 ~s~~F~~pv~~~~~pdY~~iI~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~ 87 (135)
T 3mb3_A 38 DSEPFRQPVDLLEYPDYRDIIDTPMDFAT-VRETLEAGNYESPMELCKDVR 87 (135)
T ss_dssp GGGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHH
T ss_pred CChhhcCCCChhhCCCHHHHhCCCcCHHH-HHHHHhCCCCCCHHHHHHHHH
Confidence 37899 89999999999999999999988 999999999998877777764
No 156
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=91.36 E-value=0.022 Score=56.44 Aligned_cols=52 Identities=17% Similarity=0.166 Sum_probs=44.8
Q ss_pred ccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 669 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 669 ~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
+..+.|| .+|+...+|+||.+|++||+++. +..+|+.|+|....+-..|+..
T Consensus 28 ~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~l 80 (135)
T 3rcw_A 28 KDPARIFAQPVSLKEVPDYLDHIKHPMDFAT-MRKRLEAQGYKNLHEFEEDFDL 80 (135)
T ss_dssp TCTTCSSSSCCCTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHH
T ss_pred CCcchhhcCCCChhhcCCHHHHhCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHH
Confidence 3457889 89999999999999999999988 9999999999887777766653
No 157
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=90.99 E-value=0.016 Score=56.38 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=44.7
Q ss_pred cccccccc-CCCCccc--cCchhhhhcCCCCcccccccccccccccccCCCccccc
Q 001037 668 SRRLTQIV-SPVSPQK--FGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQ 720 (1179)
Q Consensus 668 ~~~~~~~~-~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1179)
....+.|| .+|+... +|+|+.+|++||+++. +..+|+.|+|....+-..|+.
T Consensus 26 ~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~ 80 (120)
T 3jvl_A 26 HAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMST-IKSKLESREYRDAQEFGADVR 80 (120)
T ss_dssp GHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHH
T ss_pred CccccchhcCCCCchhcCCCCHHHHcCCCCCHHH-HHHHHccCCCCCHHHHHHHHH
Confidence 34568899 9999988 9999999999999998 999999999988777666654
No 158
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=90.59 E-value=0.026 Score=56.90 Aligned_cols=78 Identities=12% Similarity=0.049 Sum_probs=62.0
Q ss_pred cchhhhccCCCCCCCcccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCccccc----------c
Q 001037 653 NHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQ----------Q 721 (1179)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 721 (1179)
+.++++. ..+||.++.+| .+|+++ |+||. ++|.+++. +...|+.|+|....+...|+. +
T Consensus 17 ~~v~~~~-----De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~-Ikkri~~~~Y~sld~f~~D~~lmf~NAr~yN~ 86 (147)
T 3iu6_A 17 VSVMSHQ-----DDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDI-IRKNVENNRYRRLDLFQEHMFEVLERARRMNR 86 (147)
T ss_dssp HHHHTCB-----CTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHH-HHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhhc-----CCCCCcchHHHhHCCCCC--ccccC--CCCcCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 4556666 45899999999 999998 89998 99999988 999999999999999988875 4
Q ss_pred CCCccccCCcCccccccchhhhcc
Q 001037 722 SGSWTHDRDEGEDEQVLQPKIKRK 745 (1179)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~ 745 (1179)
.||||. +|-.+||=-..++
T Consensus 87 e~S~Iy-----eDAv~Lq~~f~~~ 105 (147)
T 3iu6_A 87 TDSEIY-----EDAVELQQFFIKI 105 (147)
T ss_dssp TTSHHH-----HHHHHHHHHHHHH
T ss_pred CCCHHH-----HHHHHHHHHHHHH
Confidence 678776 3455666433333
No 159
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=90.53 E-value=0.025 Score=55.89 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=42.2
Q ss_pred cccccc-CCCCccc--cCchhhhhcCCCCcccccccccccccccccCCCccccc
Q 001037 670 RLTQIV-SPVSPQK--FGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQ 720 (1179)
Q Consensus 670 ~~~~~~-~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1179)
.++.|| .+|+..+ +|+||++|++||+++. |..+|+.|+|....+-..|+.
T Consensus 41 ~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~Dv~ 93 (130)
T 2ouo_A 41 AYAWPFYKPVDVEALGLHDYCDIIKHPMDMST-IKSKLEAREYRDAQEFGADVR 93 (130)
T ss_dssp HHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHH
T ss_pred hhHHHhcCCCChhhccCCcHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHH
Confidence 467899 7877765 9999999999999998 999999999988776666654
No 160
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=90.27 E-value=0.023 Score=58.53 Aligned_cols=51 Identities=14% Similarity=0.186 Sum_probs=44.1
Q ss_pred ccccccc-CCCCccccCchhhhhcCCCCcccccccccccccccccCCCccccc
Q 001037 669 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQ 720 (1179)
Q Consensus 669 ~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1179)
+..+.|| .+|+...+|+|+++|++||+++. |..+|+.|+|....+-..|+.
T Consensus 87 ~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~ 138 (174)
T 2ri7_A 87 HKMAWPFLEPVDPNDAPDYYGVIKEPMDLAT-MEERVQRRYYEKLTEFVADMT 138 (174)
T ss_dssp SGGGTTTSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCCBHHHHHHHHH
T ss_pred hhhhhhhhcCCCcccCCchHHHhCCcCCHHH-HHHHHHcCCCCCHHHHHHHHH
Confidence 4567899 88999999999999999999998 999999999987766666654
No 161
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=90.27 E-value=0.027 Score=54.62 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=42.4
Q ss_pred cccccc-CCCCcc--ccCchhhhhcCCCCcccccccccccccccccCCCccccc
Q 001037 670 RLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQ 720 (1179)
Q Consensus 670 ~~~~~~-~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1179)
..+.|| .+|+.. .+|+||.+|++||+++. +..+|+.|+|....+-..|+.
T Consensus 28 ~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~ 80 (119)
T 3p1f_A 28 PESLPFRQPVDPQLLGIPDYFDIVKNPMDLST-IKRKLDTGQYQEPWQYVDDVW 80 (119)
T ss_dssp TTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHH
T ss_pred CCCchhcCCCCchhccCCCHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHH
Confidence 466889 888877 69999999999999998 899999999988776666654
No 162
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=89.87 E-value=0.037 Score=54.38 Aligned_cols=52 Identities=12% Similarity=0.157 Sum_probs=43.2
Q ss_pred ccccccc-CCCCc--cccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 669 RRLTQIV-SPVSP--QKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 669 ~~~~~~~-~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
+..+.|| .+|+. ..+|+||++|++||+++. |..+|+.|+|....+-..|+.+
T Consensus 36 ~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~l 90 (127)
T 2oss_A 36 HQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGT-IKKRLENNYYWNAQECIQDFNT 90 (127)
T ss_dssp STTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHH
T ss_pred CccchhhcCCCChhhccCccHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHH
Confidence 4567899 77775 479999999999999998 9999999999987776666543
No 163
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=88.02 E-value=0.052 Score=55.85 Aligned_cols=50 Identities=20% Similarity=0.190 Sum_probs=40.4
Q ss_pred cccccc-CCCCcc--ccCchhhhhcCCCCcccccccccccccccccCCCccccc
Q 001037 670 RLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQ 720 (1179)
Q Consensus 670 ~~~~~~-~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1179)
..+.|| .+|+.. .+|+||.+|++||+++. |..+|+.|+|....+-..|+.
T Consensus 37 ~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~t-I~~kL~~~~Y~s~~ef~~Dv~ 89 (166)
T 3fkm_X 37 EGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSC-IKTKLKKGQYAYPSEFVKDVQ 89 (166)
T ss_dssp TTGGGGSSCCC-----CCCGGGCCSSCCCHHH-HHHHHHHTCCCSHHHHHHHHH
T ss_pred CCChhhcCCCChhhccCCCHHHhcCCCCCHHH-HHHHHcCCCCCCHHHHHHHHH
Confidence 456788 777755 59999999999999988 999999999998877776664
No 164
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=82.93 E-value=0.13 Score=50.97 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=40.6
Q ss_pred ccccccc-CCCCccccCchhhhhcCCCCccccccccccc--ccccccCCCcccccc
Q 001037 669 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEE--GEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 669 ~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 721 (1179)
+..+.|| .+|.. .+|+||++|++||+++. |..+|+. |+|....+-..|+.+
T Consensus 35 ~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~t-I~~kL~~~~~~Y~s~~ef~~Dv~L 88 (135)
T 2yyn_A 35 HEMSLAFQDPVPL-TVPDYYKIIKNPMDLST-IKKRLQEDYSMYSKPEDFVADFRL 88 (135)
T ss_dssp SGGGGGGSSCCCT-TSTTHHHHCSSCCCHHH-HHHHHHSSSCCCSSHHHHHHHHHH
T ss_pred CccchhhcCCCcc-cCCCHHHHcCCCCCHHH-HHHHHhccccCCCCHHHHHHHHHH
Confidence 4567888 55544 79999999999999998 9999998 699877766666543
No 165
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=82.90 E-value=4.3 Score=51.22 Aligned_cols=99 Identities=10% Similarity=0.070 Sum_probs=74.7
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHH----cCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEE
Q 001037 264 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 339 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~----~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VL 339 (1179)
..+||..+..-.+-.....|.++||.+.....+..+.+.|.. .++++..++|+++..+|..++..+.+ +.+.|+
T Consensus 398 TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~--g~~~Iv 475 (780)
T 1gm5_A 398 VGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRN--GQIDVV 475 (780)
T ss_dssp SSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHS--SCCCEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhc--CCCCEE
Confidence 357898876666655566789999999988777666655543 38999999999999999999998884 446677
Q ss_pred eeehhhhccCCCCcccceeeecCCC
Q 001037 340 LLSIRAAGRGLNLQSADTVIIYDPD 364 (1179)
Q Consensus 340 LlST~AGgeGLNLQ~AdtVIi~D~p 364 (1179)
+.+.......+++...+.||+=+-+
T Consensus 476 VgT~~ll~~~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 476 IGTHALIQEDVHFKNLGLVIIDEQH 500 (780)
T ss_dssp EECTTHHHHCCCCSCCCEEEEESCC
T ss_pred EECHHHHhhhhhccCCceEEecccc
Confidence 7777667667788888777664433
No 166
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=81.81 E-value=7.1 Score=46.86 Aligned_cols=87 Identities=15% Similarity=0.175 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhh-cCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcC-CCCHHHHHHHHHHhccCCCCccEEeeeh--h
Q 001037 269 LWILDRILIKLQR-TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDG-TTSLEDRESAIVDFNSHDSDCFIFLLSI--R 344 (1179)
Q Consensus 269 l~~L~~IL~el~~-~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdG-sts~eeRe~iI~~Fn~~ds~i~VLLlST--~ 344 (1179)
...+.+.|..+.. .+..+|||...-..++.+.+ ..+..+. +.| +++ +..+++.|+... . .+|+++ .
T Consensus 378 ~~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~---~~~~~v~-~q~~~~~---~~~~~~~~~~~~-~--~vl~~v~gg 447 (551)
T 3crv_A 378 WKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMS---RISLPKY-VESEDSS---VEDLYSAISANN-K--VLIGSVGKG 447 (551)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHT---TCCSSEE-ECCSSCC---HHHHHHHTTSSS-S--CEEEEESSC
T ss_pred HHHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHH---hcCCcEE-EcCCCCC---HHHHHHHHHhcC-C--eEEEEEecc
Confidence 3455555555543 44566666655555555554 2344433 344 333 456888886322 2 255555 6
Q ss_pred hhccCCCCc-----ccceeeecCCCC
Q 001037 345 AAGRGLNLQ-----SADTVIIYDPDP 365 (1179)
Q Consensus 345 AGgeGLNLQ-----~AdtVIi~D~pW 365 (1179)
...||||++ .+..||+.-+|+
T Consensus 448 ~~~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 448 KLAEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp CSCCSSCCEETTEESEEEEEEESCCC
T ss_pred eecccccccccCCcceeEEEEEcCCC
Confidence 899999999 488899888776
No 167
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=80.49 E-value=0.22 Score=52.69 Aligned_cols=49 Identities=18% Similarity=0.269 Sum_probs=40.0
Q ss_pred cccccc-CCCCccccCchhhhhcCCCCccccccccccc---ccccccCCCccccc
Q 001037 670 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEE---GEIAVSGDSHMDHQ 720 (1179)
Q Consensus 670 ~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 720 (1179)
..+.|| .+|. ..+|+||.+|++||+++. |..+|+. |+|....+-..|+.
T Consensus 97 ~~s~~F~~Pv~-~~~pdY~~iIk~PmdL~t-I~~kl~~~~~~~Y~s~~~f~~Dv~ 149 (207)
T 3u5n_A 97 ELSIEFQEPVP-ASIPNYYKIIKKPMDLST-VKKKLQKKHSQHYQIPDDFVADVR 149 (207)
T ss_dssp TTCGGGSSCCC-TTSTTHHHHCSSCCCHHH-HHHHHSTTSTTCCSSHHHHHHHHH
T ss_pred cchhhhhccCC-hhhccHhHHhCCccCHHH-HHHHHhcccCCCcCCHHHHHHHHH
Confidence 457788 5454 489999999999999998 8899998 89988777666664
No 168
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.25 E-value=0.18 Score=49.92 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=38.1
Q ss_pred cccccCCCCccccCchhhhhcCCCCcccccccccccccccccCCCcccccc
Q 001037 671 LTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 721 (1179)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1179)
.+.||.-| +|+||++|++||+++. +..+|+.|+|....+-..|+..
T Consensus 29 ~~~~F~~P----~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~~f~~D~~L 74 (131)
T 2dkw_A 29 RFNIFSKP----VSDYLEVIKEPMDLST-VITKIDKHNYLTAKDFLKDIDL 74 (131)
T ss_dssp GGCTTSSC----CSSCTTSCSSCCCHHH-HHHHHHTTCCCSSHHHHHHHHH
T ss_pred cchhhcCc----CccHHhHcCCCcCHHH-HHHHHcCCCCCCHHHHHHHHHH
Confidence 45788334 9999999999999998 9999999999988776666543
No 169
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=79.92 E-value=0.78 Score=55.21 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=26.8
Q ss_pred CCCEEEEcHHHHHhchh--hhc-------cCCccEEEEcCCccC
Q 001037 39 KFNVLVTTYEFIMYDRS--KLS-------KVDWKYIIIDEAQRM 73 (1179)
Q Consensus 39 ~~dVVITTYE~L~~d~~--~L~-------ki~wdlVIIDEAHri 73 (1179)
..+|||+||.++..+.. .+. .....+|||||||++
T Consensus 144 ~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl 187 (540)
T 2vl7_A 144 DKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNL 187 (540)
T ss_dssp GCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGG
T ss_pred cCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccH
Confidence 46999999999987532 222 235789999999999
No 170
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=78.70 E-value=1.2 Score=53.64 Aligned_cols=38 Identities=29% Similarity=0.501 Sum_probs=28.3
Q ss_pred CCCCEEEEcHHHHHhch--hhhc-cCCccEEEEcCCccCCC
Q 001037 38 LKFNVLVTTYEFIMYDR--SKLS-KVDWKYIIIDEAQRMKD 75 (1179)
Q Consensus 38 ~~~dVVITTYE~L~~d~--~~L~-ki~wdlVIIDEAHriKN 75 (1179)
...+||||||.++..+. ..+. .....+|||||||++-+
T Consensus 147 ~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 147 YKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp GGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 46799999999998763 2121 13567899999999854
No 171
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=77.98 E-value=7.3 Score=44.32 Aligned_cols=95 Identities=20% Similarity=0.204 Sum_probs=69.3
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHH---cCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEe
Q 001037 264 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 340 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~---~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLL 340 (1179)
..+||-.+..-.+..+...+.++||.+.....+..+.+.|.. .++.+..++|+++..++...+..+..+ .+.|++
T Consensus 45 TGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~--~~~Iiv 122 (414)
T 3oiy_A 45 TGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED--DYHILV 122 (414)
T ss_dssp SSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHT--CCSEEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcC--CCCEEE
Confidence 457888755555444556788999999999999988888887 588999999999998888888888742 356777
Q ss_pred eehhhhccC---CCCcccceeee
Q 001037 341 LSIRAAGRG---LNLQSADTVII 360 (1179)
Q Consensus 341 lST~AGgeG---LNLQ~AdtVIi 360 (1179)
+++...-.- +++...+.||+
T Consensus 123 ~Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 123 FSTQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp EEHHHHHHCHHHHTTCCCSEEEE
T ss_pred ECHHHHHHHHHHhccccccEEEE
Confidence 777665322 33445555544
No 172
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=76.47 E-value=0.25 Score=51.32 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=39.3
Q ss_pred cccccc-CCCCccccCchhhhhcCCCCccccccccccc--ccccccCCCccccc
Q 001037 670 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEE--GEIAVSGDSHMDHQ 720 (1179)
Q Consensus 670 ~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 720 (1179)
..+.|| .+|. ..+|+||.+|++||+++. |..+|+. |+|....+-..|+.
T Consensus 97 ~~s~~F~~Pv~-~~~pdY~~iIk~PmdL~t-I~~kl~~~~~~Y~s~~ef~~Dv~ 148 (184)
T 3o36_A 97 EMSLAFQDPVP-LTVPDYYKIIKNPMDLST-IKKRLQEDYSMYSKPEDFVADFR 148 (184)
T ss_dssp TTCHHHHSCCC-TTSTTHHHHCSSCCCHHH-HHHHHHSTTCSCCSHHHHHHHHH
T ss_pred hhhhhhccccc-cCCCchhhhcCCCCCHHH-HHHHHHhcCCCCCCHHHHHHHHH
Confidence 346777 5554 469999999999999998 8999998 89988777666654
No 173
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=73.94 E-value=1.2 Score=54.63 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=26.2
Q ss_pred CCCCEEEEcHHHHHhchhh---hc----cCCccEEEEcCCccCC
Q 001037 38 LKFNVLVTTYEFIMYDRSK---LS----KVDWKYIIIDEAQRMK 74 (1179)
Q Consensus 38 ~~~dVVITTYE~L~~d~~~---L~----ki~wdlVIIDEAHriK 74 (1179)
...||||++|.++....-. +. ...-.+|||||||++-
T Consensus 174 ~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~ 217 (620)
T 4a15_A 174 PDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLP 217 (620)
T ss_dssp GGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHH
T ss_pred hcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchH
Confidence 3579999999987765311 11 2244699999999984
No 174
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=67.41 E-value=20 Score=47.11 Aligned_cols=95 Identities=11% Similarity=0.080 Sum_probs=73.4
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHH----cCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEE
Q 001037 264 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 339 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~----~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VL 339 (1179)
..+||..+....+-.+...+.++||.+..+..+....+.|.. .++.+..++|..+..++...+..... +.+.|+
T Consensus 633 TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~--g~~dIv 710 (1151)
T 2eyq_A 633 VGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE--GKIDIL 710 (1151)
T ss_dssp CCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHT--TCCSEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhc--CCCCEE
Confidence 347898876655555566788999999998888776666653 36789999999999999999988874 456688
Q ss_pred eeehhhhccCCCCcccceeee
Q 001037 340 LLSIRAAGRGLNLQSADTVII 360 (1179)
Q Consensus 340 LlST~AGgeGLNLQ~AdtVIi 360 (1179)
+++.......+++...+.||+
T Consensus 711 V~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 711 IGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp EECTHHHHSCCCCSSEEEEEE
T ss_pred EECHHHHhCCccccccceEEE
Confidence 888788877788877776665
No 175
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=62.95 E-value=18 Score=47.37 Aligned_cols=95 Identities=20% Similarity=0.204 Sum_probs=72.2
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHH---cCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEe
Q 001037 264 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 340 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~---~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLL 340 (1179)
..+||-.+..-.+..+...+.++||.+..+..+..+.+.|.. .++.+..++|+++..+|...+..+.. +.+.|++
T Consensus 102 TGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~--g~~~IlV 179 (1104)
T 4ddu_A 102 TGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE--DDYHILV 179 (1104)
T ss_dssp TTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHT--SCCSEEE
T ss_pred CCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhC--CCCCEEE
Confidence 457898876666666667788999999999999999998887 57899999999998888888888874 3456777
Q ss_pred eehhhhccC---CCCcccceeee
Q 001037 341 LSIRAAGRG---LNLQSADTVII 360 (1179)
Q Consensus 341 lST~AGgeG---LNLQ~AdtVIi 360 (1179)
+++...-.- +++...+.||+
T Consensus 180 ~Tp~rL~~~l~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 180 FSTQFVSKNREKLSQKRFDFVFV 202 (1104)
T ss_dssp EEHHHHHHSHHHHHTSCCSEEEE
T ss_pred ECHHHHHHHHHhhcccCcCEEEE
Confidence 777665222 33455665554
No 176
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=62.77 E-value=4.8 Score=49.90 Aligned_cols=83 Identities=14% Similarity=0.067 Sum_probs=48.3
Q ss_pred hHHHHHHHHcCCCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHHhchhhhccCCccEEEEcCCccCCCh--hhHH
Q 001037 3 MWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDR--ESVL 80 (1179)
Q Consensus 3 QW~~Ef~Kw~P~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriKN~--~Sk~ 80 (1179)
|+.+.|.+. +..+.++.|.... +. .......+++++|.+.+. ....+++|||||+|++.+. ....
T Consensus 194 Qi~~~l~~~--g~~v~lltG~~~~---iv--~TpGr~~~il~~T~e~~~------l~~~v~lvVIDEaH~l~d~~~g~~~ 260 (677)
T 3rc3_A 194 EIFEKSNAA--GVPCDLVTGEERV---TV--QPNGKQASHVSCTVEMCS------VTTPYEVAVIDEIQMIRDPARGWAW 260 (677)
T ss_dssp HHHHHHHHT--TCCEEEECSSCEE---CC--STTCCCCSEEEEEGGGCC------SSSCEEEEEECSGGGGGCTTTHHHH
T ss_pred HHHHHHHhc--CCcEEEEECCeeE---Ee--cCCCcccceeEecHhHhh------hcccCCEEEEecceecCCccchHHH
Confidence 444555543 5567777665322 00 001123678888876543 1236799999999998543 2344
Q ss_pred HHHHHhhc--CCcEEEEecc
Q 001037 81 ARDLDRYR--CQRRLLLTGT 98 (1179)
Q Consensus 81 tkaL~~Lk--a~~RLLLTGT 98 (1179)
...+..+. ..+.+++|||
T Consensus 261 ~~~l~~l~~~~i~il~~SAT 280 (677)
T 3rc3_A 261 TRALLGLCAEEVHLCGEPAA 280 (677)
T ss_dssp HHHHHHCCEEEEEEEECGGG
T ss_pred HHHHHccCccceEEEeccch
Confidence 55555554 3346777888
No 177
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=59.40 E-value=5.6 Score=40.86 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=24.1
Q ss_pred CccEEEEcCCccCCChhhHHHHHHHhh-cCCcEEEEecc
Q 001037 61 DWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLLLTGT 98 (1179)
Q Consensus 61 ~wdlVIIDEAHriKN~~Sk~tkaL~~L-ka~~RLLLTGT 98 (1179)
.+++|||||+|.+.. .....|..+ .....+++||+
T Consensus 76 ~~dvviIDE~Q~~~~---~~~~~l~~l~~~~~~Vi~~Gl 111 (184)
T 2orw_A 76 DTRGVFIDEVQFFNP---SLFEVVKDLLDRGIDVFCAGL 111 (184)
T ss_dssp TEEEEEECCGGGSCT---THHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEECcccCCH---HHHHHHHHHHHCCCCEEEEee
Confidence 589999999999832 134444443 34667888887
No 178
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=57.48 E-value=35 Score=41.36 Aligned_cols=99 Identities=18% Similarity=0.136 Sum_probs=57.3
Q ss_pred hhHHHHHHHHcCCCcEEEEEcChhHHhHH----HhhHhhhCCCCEEEEcHHHHHhc------------hh-hh-------
Q 001037 2 SMWQSELHKWLPSVSCIYYVGAKDQRSRL----FSQEVAALKFNVLVTTYEFIMYD------------RS-KL------- 57 (1179)
Q Consensus 2 sQW~~Ef~Kw~P~l~Vvvy~G~~~~R~~l----~~~~~~~~~~dVVITTYE~L~~d------------~~-~L------- 57 (1179)
..|+.+.-..+-.-.++++.|.+-.-+.. +..........|+++++.-.... .. .|
T Consensus 191 ~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~ 270 (574)
T 3e1s_A 191 SEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGF 270 (574)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEE
T ss_pred CHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchh
Confidence 46777776666555677777654222111 11122334677888755431110 00 11
Q ss_pred -----ccCCccEEEEcCCccCCChhhHHHHHHHhhcCCcEEEEeccCCCC
Q 001037 58 -----SKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 102 (1179)
Q Consensus 58 -----~ki~wdlVIIDEAHriKN~~Sk~tkaL~~Lka~~RLLLTGTPiqN 102 (1179)
....+++|||||+|.+-. ..+...+..+....+++|.|-|-|.
T Consensus 271 ~~~~~~~~~~dvlIIDEasml~~--~~~~~Ll~~~~~~~~lilvGD~~QL 318 (574)
T 3e1s_A 271 RHNHLEPAPYDLLIVDEVSMMGD--ALMLSLLAAVPPGARVLLVGDTDQL 318 (574)
T ss_dssp SCSSSSCCSCSEEEECCGGGCCH--HHHHHHHTTSCTTCEEEEEECTTSC
T ss_pred hhhhcccccCCEEEEcCccCCCH--HHHHHHHHhCcCCCEEEEEeccccc
Confidence 123689999999999842 2333444455667799999999884
No 179
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=56.07 E-value=16 Score=46.52 Aligned_cols=66 Identities=17% Similarity=0.291 Sum_probs=42.5
Q ss_pred hhHHHHHHHHcCCCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHH-----Hhc----hhhhccCCccEEEEcCCcc
Q 001037 2 SMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI-----MYD----RSKLSKVDWKYIIIDEAQR 72 (1179)
Q Consensus 2 sQW~~Ef~Kw~P~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L-----~~d----~~~L~ki~wdlVIIDEAHr 72 (1179)
.+|...|.+|+ ++++.+..|......+... ...+|++.|...| ... ...+..-...++|||||+.
T Consensus 169 ae~m~~l~~~l-GLsv~~i~gg~~~~~r~~~-----y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDs 242 (922)
T 1nkt_A 169 SEWMGRVHRFL-GLQVGVILATMTPDERRVA-----YNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDS 242 (922)
T ss_dssp HHHHHHHHHHT-TCCEEECCTTCCHHHHHHH-----HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHH
T ss_pred HHHHHHHHhhc-CCeEEEEeCCCCHHHHHHh-----cCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHH
Confidence 47889999988 5777666654322111111 1369999998776 222 1234444788999999997
Q ss_pred C
Q 001037 73 M 73 (1179)
Q Consensus 73 i 73 (1179)
+
T Consensus 243 m 243 (922)
T 1nkt_A 243 I 243 (922)
T ss_dssp H
T ss_pred H
Confidence 6
No 180
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=54.60 E-value=57 Score=36.64 Aligned_cols=89 Identities=18% Similarity=0.216 Sum_probs=61.9
Q ss_pred ccCHHHHHHHHHHHHh-hcCCeEEEeehhHHHHHHHHHHHHHc-CC---eEEEEcCCCCHHHHHHHHHHhccCCCCccEE
Q 001037 265 SCGKLWILDRILIKLQ-RTGHRVLLFSTMTKLLDILEEYLQWR-QL---VYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 339 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~-~~g~KVLIFSqft~~ldiLe~~L~~~-Gi---~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VL 339 (1179)
.+||-.....++..+. ..+.++||.+.....+....+.|... ++ .+..++|+....++...... ..|+
T Consensus 33 G~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-------~~iv 105 (494)
T 1wp9_A 33 GLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR-------AKVI 105 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHH-------CSEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhccC-------CCEE
Confidence 5688877766665543 46789999999988887777777654 66 89999999988776554332 3477
Q ss_pred eeehhhhcc-----CCCCcccceeee
Q 001037 340 LLSIRAAGR-----GLNLQSADTVII 360 (1179)
Q Consensus 340 LlST~AGge-----GLNLQ~AdtVIi 360 (1179)
+++...... .+++...+.||+
T Consensus 106 v~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 106 VATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp EECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred EecHHHHHHHHhcCCcchhhceEEEE
Confidence 777766542 355666666665
No 181
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=52.99 E-value=98 Score=31.45 Aligned_cols=92 Identities=14% Similarity=0.103 Sum_probs=58.2
Q ss_pred cccCHHHHHHHHHHHH-hh--cCCeEEEeehhHHHHHHHHHHHHHc-----CCeEEEEcCCCCHHHHHHHHHHhccCCCC
Q 001037 264 KSCGKLWILDRILIKL-QR--TGHRVLLFSTMTKLLDILEEYLQWR-----QLVYRRIDGTTSLEDRESAIVDFNSHDSD 335 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el-~~--~g~KVLIFSqft~~ldiLe~~L~~~-----Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~ 335 (1179)
..+||.....-.+... .. .+.++||.+.....+..+.+.+... ++.+..+.|+.+..+....+.. ..
T Consensus 60 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-----~~ 134 (220)
T 1t6n_A 60 SGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK-----NC 134 (220)
T ss_dssp TTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH-----SC
T ss_pred CCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc-----CC
Confidence 3568876544333333 22 2348999999988888777777654 7889999999887665544433 12
Q ss_pred ccEEeeehhhhc-----cCCCCcccceeee
Q 001037 336 CFIFLLSIRAAG-----RGLNLQSADTVII 360 (1179)
Q Consensus 336 i~VLLlST~AGg-----eGLNLQ~AdtVIi 360 (1179)
+.|++++....- ..+++...+.||+
T Consensus 135 ~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 135 PHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 456666655432 3456666666665
No 182
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=51.74 E-value=23 Score=38.77 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=27.2
Q ss_pred CccEEEEcCCccCC-C-hhhHHHHHHHhhcCCcEEEEeccCCC
Q 001037 61 DWKYIIIDEAQRMK-D-RESVLARDLDRYRCQRRLLLTGTPLQ 101 (1179)
Q Consensus 61 ~wdlVIIDEAHriK-N-~~Sk~tkaL~~Lka~~RLLLTGTPiq 101 (1179)
...+|||||+|.+. . ....+.+.+.......++++|+++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 67899999999984 1 22233444444456678888887654
No 183
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=51.63 E-value=9.8 Score=48.20 Aligned_cols=81 Identities=10% Similarity=0.206 Sum_probs=50.4
Q ss_pred hhHHHHHHHHcCCCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHH-----Hhch----hhhccCCccEEEEcCCcc
Q 001037 2 SMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI-----MYDR----SKLSKVDWKYIIIDEAQR 72 (1179)
Q Consensus 2 sQW~~Ef~Kw~P~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L-----~~d~----~~L~ki~wdlVIIDEAHr 72 (1179)
.+|...|.+|+ ++++.+..|......+... ...+|++.|...| .... ..+..-...++|||||+.
T Consensus 141 ~e~~~~l~~~l-gl~v~~i~gg~~~~~r~~~-----~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~ 214 (844)
T 1tf5_A 141 AEQMGKIFEFL-GLTVGLNLNSMSKDEKREA-----YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDS 214 (844)
T ss_dssp HHHHHHHHHHT-TCCEEECCTTSCHHHHHHH-----HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHH
T ss_pred HHHHHHHHhhc-CCeEEEEeCCCCHHHHHHh-----cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhh
Confidence 46888888888 6777666654332221111 2479999998777 3321 234444788999999998
Q ss_pred CCChhhHHHHHHHhhcCCcEEEEeccC
Q 001037 73 MKDRESVLARDLDRYRCQRRLLLTGTP 99 (1179)
Q Consensus 73 iKN~~Sk~tkaL~~Lka~~RLLLTGTP 99 (1179)
|-- . .+..-|++||.+
T Consensus 215 mLi---------D--ea~tplIisg~~ 230 (844)
T 1tf5_A 215 ILI---------D--EARTPLIISGQA 230 (844)
T ss_dssp HHT---------T--TTTCEEEEEEEE
T ss_pred hhh---------h--ccccchhhcCCc
Confidence 630 0 234467888743
No 184
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=49.89 E-value=1.1e+02 Score=31.69 Aligned_cols=91 Identities=13% Similarity=0.126 Sum_probs=57.2
Q ss_pred cccCHHHH-HHHHHHHHhh-------cCCeEEEeehhHHHHHHHHHHHH----HcCCeEEEEcCCCCHHHHHHHHHHhcc
Q 001037 264 KSCGKLWI-LDRILIKLQR-------TGHRVLLFSTMTKLLDILEEYLQ----WRQLVYRRIDGTTSLEDRESAIVDFNS 331 (1179)
Q Consensus 264 ~~SgKl~~-L~~IL~el~~-------~g~KVLIFSqft~~ldiLe~~L~----~~Gi~~~rIdGsts~eeRe~iI~~Fn~ 331 (1179)
..+||-.+ +.-++..+.. .+.++||.+.....+..+.+.+. ..++.+..+.|+.+.......+..
T Consensus 75 TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--- 151 (242)
T 3fe2_A 75 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER--- 151 (242)
T ss_dssp TTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH---
T ss_pred CcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC---
Confidence 35688755 4444544432 46679999988877766655554 458999999999987665544432
Q ss_pred CCCCccEEeeehhhhc-----cCCCCcccceeee
Q 001037 332 HDSDCFIFLLSIRAAG-----RGLNLQSADTVII 360 (1179)
Q Consensus 332 ~ds~i~VLLlST~AGg-----eGLNLQ~AdtVIi 360 (1179)
.+.|++++....- ..+++...+.||+
T Consensus 152 ---~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 152 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp ---CCSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred ---CCCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 2456666654432 2345666666654
No 185
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=49.76 E-value=1.2e+02 Score=32.06 Aligned_cols=91 Identities=18% Similarity=0.146 Sum_probs=56.7
Q ss_pred cccCHHHH-HHHHHHHHhhc--CCeEEEeehhHHHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHhccCCCCc
Q 001037 264 KSCGKLWI-LDRILIKLQRT--GHRVLLFSTMTKLLDILEEYLQWR----QLVYRRIDGTTSLEDRESAIVDFNSHDSDC 336 (1179)
Q Consensus 264 ~~SgKl~~-L~~IL~el~~~--g~KVLIFSqft~~ldiLe~~L~~~----Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i 336 (1179)
..+||-.+ +.-++..+... +.++||.+.....+..+.+.+... ++.+..+.|+.........+. ..+
T Consensus 89 TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~ 162 (249)
T 3ber_A 89 TGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA------KKP 162 (249)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH------TCC
T ss_pred CCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc------CCC
Confidence 35788765 34444444443 357999999888777766666543 889999999987655443332 134
Q ss_pred cEEeeehhhh------ccCCCCcccceeee
Q 001037 337 FIFLLSIRAA------GRGLNLQSADTVII 360 (1179)
Q Consensus 337 ~VLLlST~AG------geGLNLQ~AdtVIi 360 (1179)
.|++++.... ..++++...+.||+
T Consensus 163 ~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 163 HIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp SEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred CEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 5666665543 23456666666654
No 186
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=49.42 E-value=12 Score=47.55 Aligned_cols=67 Identities=10% Similarity=0.076 Sum_probs=42.5
Q ss_pred hhHHHHHHHHcCCCcEEEEEcChhHHhHHHhhHhhhCCCCEEEEcHHHHH-----hc----hhhhccCCccEEEEcCCcc
Q 001037 2 SMWQSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM-----YD----RSKLSKVDWKYIIIDEAQR 72 (1179)
Q Consensus 2 sQW~~Ef~Kw~P~l~Vvvy~G~~~~R~~l~~~~~~~~~~dVVITTYE~L~-----~d----~~~L~ki~wdlVIIDEAHr 72 (1179)
.+|...|.+++ ++++.+..|......+.. ....+|+|.|...|. .. ...+..-...++||||||+
T Consensus 132 ~e~~~~l~~~l-gl~v~~i~GG~~~~~r~~-----~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~ 205 (853)
T 2fsf_A 132 AENNRPLFEFL-GLTVGINLPGMPAPAKRE-----AYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDS 205 (853)
T ss_dssp HHHHHHHHHHT-TCCEEECCTTCCHHHHHH-----HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHH
T ss_pred HHHHHHHHHhc-CCeEEEEeCCCCHHHHHH-----hcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHH
Confidence 46888888887 577766665433221111 114799999987763 22 1224445788999999997
Q ss_pred CC
Q 001037 73 MK 74 (1179)
Q Consensus 73 iK 74 (1179)
+-
T Consensus 206 mL 207 (853)
T 2fsf_A 206 IL 207 (853)
T ss_dssp HT
T ss_pred HH
Confidence 64
No 187
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=48.78 E-value=78 Score=32.71 Aligned_cols=90 Identities=18% Similarity=0.168 Sum_probs=58.3
Q ss_pred cccCHHHH-HHHHHHHHhh--cCCeEEEeehhHHHHHHHHHHHHHc-----CCeEEEEcCCCCHHHHHHHHHHhccCCCC
Q 001037 264 KSCGKLWI-LDRILIKLQR--TGHRVLLFSTMTKLLDILEEYLQWR-----QLVYRRIDGTTSLEDRESAIVDFNSHDSD 335 (1179)
Q Consensus 264 ~~SgKl~~-L~~IL~el~~--~g~KVLIFSqft~~ldiLe~~L~~~-----Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~ 335 (1179)
..+||..+ +.-++..+.. .+.++||.+.....+..+.+.+... ++.+..+.|+....++...+ + .
T Consensus 70 TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~----~ 142 (230)
T 2oxc_A 70 SGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---K----K 142 (230)
T ss_dssp TTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---T----S
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---c----C
Confidence 35788765 4555555533 3568999999988888877777653 67889999998866554332 2 3
Q ss_pred ccEEeeehhhhc-----cCCCCcccceeee
Q 001037 336 CFIFLLSIRAAG-----RGLNLQSADTVII 360 (1179)
Q Consensus 336 i~VLLlST~AGg-----eGLNLQ~AdtVIi 360 (1179)
+.|++++....- ..+++...+.||+
T Consensus 143 ~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 143 CHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp CSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred CCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 557777665442 2345555555543
No 188
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=45.52 E-value=51 Score=38.82 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=35.6
Q ss_pred EEEEcHHHHHhchhhhccCCccEEEEcCCccCCChhhHHHHHHHhhcCCcEEEEeccCCCC
Q 001037 42 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 102 (1179)
Q Consensus 42 VVITTYE~L~~d~~~L~ki~wdlVIIDEAHriKN~~Sk~tkaL~~Lka~~RLLLTGTPiqN 102 (1179)
+-+.|++.+...........+++||||||..+- ...+...+..+.+ .+++|.|=|-|-
T Consensus 215 ~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~--~~~l~~l~~~~~~-~~vilvGD~~Ql 272 (446)
T 3vkw_A 215 DNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLH--TGCVNFLVEMSLC-DIAYVYGDTQQI 272 (446)
T ss_dssp TTEEEHHHHHHTTTSSCCCCCSEEEEETGGGSC--HHHHHHHHHHTTC-SEEEEEECTTSC
T ss_pred ceEEEeHHhhcCCCCCCCCcCCEEEEeCcccCC--HHHHHHHHHhCCC-CEEEEecCcccc
Confidence 346666665543333223358999999998762 2233333334444 899999988763
No 189
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=44.30 E-value=58 Score=42.39 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=67.9
Q ss_pred cccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHH----cCC----eEEEEcCCCCHHHHHHHHHHhccCCCC
Q 001037 264 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----RQL----VYRRIDGTTSLEDRESAIVDFNSHDSD 335 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~----~Gi----~~~rIdGsts~eeRe~iI~~Fn~~ds~ 335 (1179)
..+||-..+.-++..+...+.++||.+.....+..+.+.|.. .++ .+..++|+++..++...+..+..
T Consensus 80 TGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~---- 155 (1054)
T 1gku_B 80 TGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN---- 155 (1054)
T ss_dssp BTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG----
T ss_pred CCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC----
Confidence 457898766777777777788999999999888777766654 366 88999999998888777777763
Q ss_pred ccEEeeehhhhccCCC-Ccccceeee
Q 001037 336 CFIFLLSIRAAGRGLN-LQSADTVII 360 (1179)
Q Consensus 336 i~VLLlST~AGgeGLN-LQ~AdtVIi 360 (1179)
+.|++++....-.-+. |...+.||+
T Consensus 156 ~~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 156 FKIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp CSEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred CCEEEEcHHHHHHHHHHhccCCEEEE
Confidence 5677777766554433 555555553
No 190
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=43.24 E-value=1.3e+02 Score=30.87 Aligned_cols=90 Identities=18% Similarity=0.157 Sum_probs=53.7
Q ss_pred cccCHHHHH-HHHHHHHh------hcCCeEEEeehhHHHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHhccC
Q 001037 264 KSCGKLWIL-DRILIKLQ------RTGHRVLLFSTMTKLLDILEEYLQWR----QLVYRRIDGTTSLEDRESAIVDFNSH 332 (1179)
Q Consensus 264 ~~SgKl~~L-~~IL~el~------~~g~KVLIFSqft~~ldiLe~~L~~~----Gi~~~rIdGsts~eeRe~iI~~Fn~~ 332 (1179)
..+||-.+. .-++..+. ..+.++||.+.....+..+.+.+... ++.+..+.|+.+....... ++
T Consensus 71 TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~-- 145 (236)
T 2pl3_A 71 TGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAER---IN-- 145 (236)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHH---HT--
T ss_pred CCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHh---CC--
Confidence 357887653 33343332 34678999999988888777777654 4788888998765443332 22
Q ss_pred CCCccEEeeehhhhc------cCCCCcccceeee
Q 001037 333 DSDCFIFLLSIRAAG------RGLNLQSADTVII 360 (1179)
Q Consensus 333 ds~i~VLLlST~AGg------eGLNLQ~AdtVIi 360 (1179)
.+.|++++....- ..+++...+.||+
T Consensus 146 --~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 146 --NINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp --TCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred --CCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 3457777765442 1345555555554
No 191
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=42.17 E-value=1.4e+02 Score=32.79 Aligned_cols=92 Identities=16% Similarity=0.126 Sum_probs=59.6
Q ss_pred cccCHHHHHHH-HHHHHhh--cCCeEEEeehhHHHHHHHHHHHHHc-----CCeEEEEcCCCCHHHHHHHHHHhccCCCC
Q 001037 264 KSCGKLWILDR-ILIKLQR--TGHRVLLFSTMTKLLDILEEYLQWR-----QLVYRRIDGTTSLEDRESAIVDFNSHDSD 335 (1179)
Q Consensus 264 ~~SgKl~~L~~-IL~el~~--~g~KVLIFSqft~~ldiLe~~L~~~-----Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~ 335 (1179)
..+||-....- ++..+.. .+.++||.+.....+..+.+.+... ++.+..+.|+.+..+....+.. ..
T Consensus 54 TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~ 128 (391)
T 1xti_A 54 SGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK-----NC 128 (391)
T ss_dssp SCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHH-----SC
T ss_pred CCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhc-----CC
Confidence 35688765433 3333322 3458999999988888777777654 7889999999987666554433 12
Q ss_pred ccEEeeehhhhc-----cCCCCcccceeee
Q 001037 336 CFIFLLSIRAAG-----RGLNLQSADTVII 360 (1179)
Q Consensus 336 i~VLLlST~AGg-----eGLNLQ~AdtVIi 360 (1179)
+.|++++....- ..+++...+.||+
T Consensus 129 ~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 129 PHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred CCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 457777766542 3456666666665
No 192
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=40.82 E-value=85 Score=32.18 Aligned_cols=91 Identities=20% Similarity=0.176 Sum_probs=52.6
Q ss_pred cccCHHHH-HHHHHHHHh--------hcCCeEEEeehhHHHHHHHHHHHHHc---CCeEEEEcCCCCHHHHHHHHHHhcc
Q 001037 264 KSCGKLWI-LDRILIKLQ--------RTGHRVLLFSTMTKLLDILEEYLQWR---QLVYRRIDGTTSLEDRESAIVDFNS 331 (1179)
Q Consensus 264 ~~SgKl~~-L~~IL~el~--------~~g~KVLIFSqft~~ldiLe~~L~~~---Gi~~~rIdGsts~eeRe~iI~~Fn~ 331 (1179)
..+||-.+ +.-++..+. ..+.++||.+.....+..+.+.+... ++.+..+.|+.+...+... +..
T Consensus 66 TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 142 (228)
T 3iuy_A 66 TGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---ISK 142 (228)
T ss_dssp TTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HHS
T ss_pred CCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hcC
Confidence 34677654 333343332 25678999999999988888888763 7888888888765443332 232
Q ss_pred CCCCccEEeeehhhhc-----cCCCCcccceeee
Q 001037 332 HDSDCFIFLLSIRAAG-----RGLNLQSADTVII 360 (1179)
Q Consensus 332 ~ds~i~VLLlST~AGg-----eGLNLQ~AdtVIi 360 (1179)
.+.|++++....- ..+++...+.||+
T Consensus 143 ---~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 143 ---GVDIIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp ---CCSEEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred ---CCCEEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 2456666654432 2445666665554
No 193
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=40.66 E-value=1.9e+02 Score=30.52 Aligned_cols=91 Identities=16% Similarity=0.167 Sum_probs=56.4
Q ss_pred cccCHHHH-HHHHHHHHhh------cCCeEEEeehhHHHHHHHHHHHHH----cCCeEEEEcCCCCHHHHHHHHHHhccC
Q 001037 264 KSCGKLWI-LDRILIKLQR------TGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSH 332 (1179)
Q Consensus 264 ~~SgKl~~-L~~IL~el~~------~g~KVLIFSqft~~ldiLe~~L~~----~Gi~~~rIdGsts~eeRe~iI~~Fn~~ 332 (1179)
..+||-.+ +.-++..+.. .+.++||.+.....+..+.+.|.. .++.+..+.|+.........+ ..
T Consensus 100 TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~- 175 (262)
T 3ly5_A 100 TGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GN- 175 (262)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HH-
T ss_pred CCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cC-
Confidence 35678764 4444444433 577899999998888777776665 467888899988765544333 22
Q ss_pred CCCccEEeeehhhh------ccCCCCcccceeee
Q 001037 333 DSDCFIFLLSIRAA------GRGLNLQSADTVII 360 (1179)
Q Consensus 333 ds~i~VLLlST~AG------geGLNLQ~AdtVIi 360 (1179)
.+.|+++++... ..++++.....||+
T Consensus 176 --~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 176 --GINIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp --CCSEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred --CCCEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 245666654322 23456666666554
No 194
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=38.56 E-value=2 Score=44.87 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=38.0
Q ss_pred cccccc-CCCCccccCchhhhhc--CCCCcccccccccccc---cccccCCCcccccc
Q 001037 670 RLTQIV-SPVSPQKFGSLSALEA--RPGSLSKRMPDELEEG---EIAVSGDSHMDHQQ 721 (1179)
Q Consensus 670 ~~~~~~-~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 721 (1179)
..+.|| .+|+ |+||.+|+ +||+++. |..+|+.| +|....+-..|+..
T Consensus 92 ~~s~pF~~pV~----~~Yy~iIk~~~PMDL~t-Ik~kL~~~~~~~Y~s~~eF~~Dv~L 144 (189)
T 2ro1_A 92 EPCRPLHQLAT----DSTFSLDQPGGTLDLTL-IRARLQEKLSPPYSSPQEFAQDVGR 144 (189)
T ss_dssp TTHHHHHSCSC----CTTCSSSCSSCCCCHHH-HHHHHHTSSSSCCSCHHHHHHHHHH
T ss_pred ccchhhcCCCC----hhhhccccCCCcccHHH-HHHHHhcCCCcccCCHHHHHHHHHH
Confidence 356688 6776 78999998 7999988 99999999 89877766666654
No 195
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=37.72 E-value=1e+02 Score=27.94 Aligned_cols=100 Identities=11% Similarity=-0.141 Sum_probs=58.7
Q ss_pred HHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccC--CCCccEEeeehhhhccCCCC
Q 001037 275 ILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH--DSDCFIFLLSIRAAGRGLNL 352 (1179)
Q Consensus 275 IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~--ds~i~VLLlST~AGgeGLNL 352 (1179)
.+..+...+..|..+......+..+ ....+..+.++-.++..+-..++...+.. ...+.|++++...-..-...
T Consensus 19 ~l~~~l~~~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~ 94 (133)
T 3nhm_A 19 TLRLLLSGEFDCTTAADGASGLQQA----LAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPA 94 (133)
T ss_dssp HHHHHHTTTSEEEEESSHHHHHHHH----HHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----T
T ss_pred HHHHHHhCCcEEEEECCHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHH
Confidence 3344444677777777665555443 44678888888766554455566666542 33567777775432211221
Q ss_pred c--ccceeeecCCCCCcchHHHHhhccccc
Q 001037 353 Q--SADTVIIYDPDPNPKNEEQAVARAHRI 380 (1179)
Q Consensus 353 Q--~AdtVIi~D~pWNP~~~eQAiGRIhRI 380 (1179)
. .|+. ++--|+++..+.+++.++.+-
T Consensus 95 ~~~g~~~--~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 95 DQPVPDA--YLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp TSCCCSE--EEESSCCHHHHHHHHHHHHHH
T ss_pred hhcCCce--EEeccCCHHHHHHHHHHHHhh
Confidence 1 2333 344588999999999888653
No 196
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=35.05 E-value=1.9e+02 Score=28.81 Aligned_cols=91 Identities=16% Similarity=0.138 Sum_probs=56.3
Q ss_pred cccCHHHH-HHHHHHHHh-----hcCCeEEEeehhHHHHHHHHHHHHHc--CCeEEEEcCCCCHHHHHHHHHHhccCCCC
Q 001037 264 KSCGKLWI-LDRILIKLQ-----RTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIVDFNSHDSD 335 (1179)
Q Consensus 264 ~~SgKl~~-L~~IL~el~-----~~g~KVLIFSqft~~ldiLe~~L~~~--Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~ 335 (1179)
..+||... +.-++..+. ..+.++||.+.....+..+.+.+... ++.+..+.|+.........+.. .
T Consensus 47 TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 120 (207)
T 2gxq_A 47 TGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLR------G 120 (207)
T ss_dssp TTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHH------C
T ss_pred CCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhC------C
Confidence 35788876 444455443 24678999999988888888888765 4778888888765444333321 2
Q ss_pred ccEEeeehhhhc-----cCCCCcccceeee
Q 001037 336 CFIFLLSIRAAG-----RGLNLQSADTVII 360 (1179)
Q Consensus 336 i~VLLlST~AGg-----eGLNLQ~AdtVIi 360 (1179)
+.|++++....- ..+++...+.||+
T Consensus 121 ~~i~v~T~~~l~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 121 ADAVVATPGRALDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp CSEEEECHHHHHHHHHHTSSCCTTCSEEEE
T ss_pred CCEEEECHHHHHHHHHcCCcchhhceEEEE
Confidence 446666654331 2344555555554
No 197
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=34.00 E-value=60 Score=29.45 Aligned_cols=97 Identities=9% Similarity=-0.092 Sum_probs=55.0
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccC--CCCccEEeeehhhhccCCCCcccceee
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH--DSDCFIFLLSIRAAGRGLNLQSADTVI 359 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~--ds~i~VLLlST~AGgeGLNLQ~AdtVI 359 (1179)
.|..|..+......+..+ ....+..+.++-.++..+-..++...+.. ...+.|++++......-...-.+...-
T Consensus 26 ~g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~ 101 (127)
T 3i42_A 26 LGFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDF 101 (127)
T ss_dssp TTEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSE
T ss_pred cCCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHH
Confidence 466777766655544443 45667888888666544445566666543 456777777744332221111111122
Q ss_pred ecCCCCCcchHHHHhhcccccCC
Q 001037 360 IYDPDPNPKNEEQAVARAHRIGQ 382 (1179)
Q Consensus 360 i~D~pWNP~~~eQAiGRIhRIGQ 382 (1179)
++.-|+++..+.+++.++++-+.
T Consensus 102 ~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 102 YLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp EEESSCCHHHHHHHHHHHC----
T ss_pred heeCCCCHHHHHHHHHHhhccCC
Confidence 45668899999999998876554
No 198
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=33.87 E-value=96 Score=27.03 Aligned_cols=93 Identities=13% Similarity=0.071 Sum_probs=52.1
Q ss_pred hcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCC--CCccEEeeehhhhccCCCCccccee
Q 001037 281 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD--SDCFIFLLSIRAAGRGLNLQSADTV 358 (1179)
Q Consensus 281 ~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~d--s~i~VLLlST~AGgeGLNLQ~AdtV 358 (1179)
..|..|..+......+..+ ....+..+.++-.++...-..++...+... ..+.|++++...... ....+...
T Consensus 23 ~~g~~v~~~~~~~~~~~~l----~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~--~~~~~g~~ 96 (119)
T 2j48_A 23 AAGFKVIWLVDGSTALDQL----DLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD--PLLTAQAS 96 (119)
T ss_dssp HTTCEEEEESCHHHHHHHH----HHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS--HHHHHHCS
T ss_pred hCCcEEEEecCHHHHHHHH----HhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch--hhhhcCHH
Confidence 3567777776655555444 334677777776554333344555554322 456677776443332 22222222
Q ss_pred eecCCCCCcchHHHHhhcccc
Q 001037 359 IIYDPDPNPKNEEQAVARAHR 379 (1179)
Q Consensus 359 Ii~D~pWNP~~~eQAiGRIhR 379 (1179)
-++.-|.++..+.+++.++.+
T Consensus 97 ~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 97 AILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp EECSSCSTTHHHHHHHHTTCC
T ss_pred HhccCCCCHHHHHHHHHHHhc
Confidence 344557888888888877654
No 199
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=33.66 E-value=1.4e+02 Score=26.26 Aligned_cols=90 Identities=13% Similarity=0.014 Sum_probs=49.6
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCCCCc--ccceee
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ--SADTVI 359 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGLNLQ--~AdtVI 359 (1179)
.|..|..+......+.. +....+..+.++-.++..+-..++..++.....+.|++++...... .... .|+.
T Consensus 24 ~~~~v~~~~~~~~a~~~----~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~-~~~~~~g~~~-- 96 (116)
T 3a10_A 24 EGYEIDTAENGEEALKK----FFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR-SDMSSWAADE-- 96 (116)
T ss_dssp TTCEEEEESSHHHHHHH----HHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG-GCGGGGGSSE--
T ss_pred CCCEEEEeCCHHHHHHH----HhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH-HHHHhccccc--
Confidence 46677665554444443 3445677888876654333334555554323456677776443222 2222 2333
Q ss_pred ecCCCCCcchHHHHhhccc
Q 001037 360 IYDPDPNPKNEEQAVARAH 378 (1179)
Q Consensus 360 i~D~pWNP~~~eQAiGRIh 378 (1179)
++.-|+++....+++.++.
T Consensus 97 ~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 97 YVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp EEECCSSTHHHHHHHHHHT
T ss_pred eEECCCCHHHHHHHHHHHh
Confidence 3346788888888887764
No 200
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=33.55 E-value=59 Score=37.77 Aligned_cols=91 Identities=18% Similarity=0.210 Sum_probs=56.1
Q ss_pred cccCHHHHHHHHHHHHhhc-----CCeEEEeehhHHHHHHHHHHHHH----cCCeEEEEcCCCCHHHHHHHHHHhccCCC
Q 001037 264 KSCGKLWILDRILIKLQRT-----GHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDS 334 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~-----g~KVLIFSqft~~ldiLe~~L~~----~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds 334 (1179)
..+||.....-.+...... +.++||.+.....+..+...+.. .++.+..++|+.+...+...+. .
T Consensus 28 tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~---- 101 (555)
T 3tbk_A 28 TGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII--E---- 101 (555)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH--H----
T ss_pred CCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh--c----
Confidence 3578877655444444332 77899999988777665555554 3899999999986544322222 1
Q ss_pred CccEEeeehhhhccC-----C-CCcccceeee
Q 001037 335 DCFIFLLSIRAAGRG-----L-NLQSADTVII 360 (1179)
Q Consensus 335 ~i~VLLlST~AGgeG-----L-NLQ~AdtVIi 360 (1179)
.+.|+++++...-.- + .+...+.||+
T Consensus 102 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 133 (555)
T 3tbk_A 102 DNDIIILTPQILVNNLNNGAIPSLSVFTLMIF 133 (555)
T ss_dssp HCSEEEECHHHHHHHHHTSSSCCGGGCSEEEE
T ss_pred CCCEEEECHHHHHHHHhcCcccccccCCEEEE
Confidence 244777776664321 2 4555666654
No 201
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=33.53 E-value=75 Score=36.98 Aligned_cols=91 Identities=14% Similarity=0.187 Sum_probs=54.4
Q ss_pred cccCHHHHHHHHHHHHhhc-----CCeEEEeehhHHHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHhccCCC
Q 001037 264 KSCGKLWILDRILIKLQRT-----GHRVLLFSTMTKLLDILEEYLQWR----QLVYRRIDGTTSLEDRESAIVDFNSHDS 334 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~-----g~KVLIFSqft~~ldiLe~~L~~~----Gi~~~rIdGsts~eeRe~iI~~Fn~~ds 334 (1179)
..+||.....-.+...... +.++||.+.....+..+...|... ++.+..++|+.+...+...+. .
T Consensus 31 tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~---- 104 (556)
T 4a2p_A 31 TGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI--E---- 104 (556)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH--H----
T ss_pred CCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh--C----
Confidence 3578876655444443332 678999999887777666666543 899999999986554432222 1
Q ss_pred CccEEeeehhhhcc----C-C-CCcccceeee
Q 001037 335 DCFIFLLSIRAAGR----G-L-NLQSADTVII 360 (1179)
Q Consensus 335 ~i~VLLlST~AGge----G-L-NLQ~AdtVIi 360 (1179)
.+.|+++++...-. | + ++...+.||+
T Consensus 105 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 136 (556)
T 4a2p_A 105 DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 136 (556)
T ss_dssp HCSEEEECHHHHHHHHHSSSCCCSTTCSEEEE
T ss_pred CCCEEEECHHHHHHHHHhCcccccccCCEEEE
Confidence 24477777766542 2 3 5666666665
No 202
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=32.30 E-value=56 Score=30.57 Aligned_cols=50 Identities=10% Similarity=0.049 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhcC-CeEEEeeh-hHHHHHHHHHHHHHcCCeEEEEcCCCC
Q 001037 268 KLWILDRILIKLQRTG-HRVLLFST-MTKLLDILEEYLQWRQLVYRRIDGTTS 318 (1179)
Q Consensus 268 Kl~~L~~IL~el~~~g-~KVLIFSq-ft~~ldiLe~~L~~~Gi~~~rIdGsts 318 (1179)
++..+...+..+- .+ ..|||||. .-.........|...|+.+..++|++.
T Consensus 74 ~~~~~~~~~~~~~-~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 74 KLKDIYLQAAELA-LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp GHHHHHHHHHHHH-TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred cHHHHHHHHHHhc-cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 3444444455443 44 88999994 545566788889999999999999874
No 203
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=31.56 E-value=1.1e+02 Score=36.93 Aligned_cols=79 Identities=13% Similarity=0.099 Sum_probs=60.9
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehh
Q 001037 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 344 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~ 344 (1179)
.+||-.+. +|.-+. .+.++||.+.....+....+.|...|+.+..++|+++..++..++..+......+.|++++..
T Consensus 69 GsGKTl~~--~lpal~-~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe 145 (591)
T 2v1x_A 69 GGGKSLCY--QLPALC-SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPE 145 (591)
T ss_dssp TSCTTHHH--HHHHHT-SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHH
T ss_pred CChHHHHH--HHHHHH-cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChh
Confidence 45675432 233333 355899999999999988999998999999999999999988888888544567788888876
Q ss_pred hh
Q 001037 345 AA 346 (1179)
Q Consensus 345 AG 346 (1179)
..
T Consensus 146 ~L 147 (591)
T 2v1x_A 146 KI 147 (591)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 204
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=31.45 E-value=1.5e+02 Score=29.84 Aligned_cols=86 Identities=14% Similarity=0.179 Sum_probs=43.7
Q ss_pred CCcEEEEEcChhHHh----HHHhhHhhhCCCCEEEEcHHHHHhch-hhhcc-CCccEEEEcCCccCCCh---hhHHHHHH
Q 001037 14 SVSCIYYVGAKDQRS----RLFSQEVAALKFNVLVTTYEFIMYDR-SKLSK-VDWKYIIIDEAQRMKDR---ESVLARDL 84 (1179)
Q Consensus 14 ~l~Vvvy~G~~~~R~----~l~~~~~~~~~~dVVITTYE~L~~d~-~~L~k-i~wdlVIIDEAHriKN~---~Sk~tkaL 84 (1179)
....+++.|.+-.-+ ..+........+.++.++...+.... ..+.. ....+|||||+|.+... ...+...+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l 130 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLY 130 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGGTTGGGSSEEEEETGGGGTTCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHHhccCCCEEEEeccccccCCHHHHHHHHHHH
Confidence 345566666442221 22222233335667666655444321 12222 24689999999998543 23344444
Q ss_pred Hhhc--CCcEEEEeccC
Q 001037 85 DRYR--CQRRLLLTGTP 99 (1179)
Q Consensus 85 ~~Lk--a~~RLLLTGTP 99 (1179)
..+. ...++++|++.
T Consensus 131 ~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 131 NRVAEQKRGSLIVSASA 147 (242)
T ss_dssp HHHHHHCSCEEEEEESS
T ss_pred HHHHHcCCCeEEEEcCC
Confidence 4442 22247777764
No 205
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=31.27 E-value=36 Score=41.51 Aligned_cols=57 Identities=25% Similarity=0.294 Sum_probs=0.0
Q ss_pred CCCEEEEcHHHHHhchhhhccCCccEEEEcCCccCCChhhHHHHHHHhhcCCcEEEEeccCCC
Q 001037 39 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 101 (1179)
Q Consensus 39 ~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriKN~~Sk~tkaL~~Lka~~RLLLTGTPiq 101 (1179)
..+||++|...+.... |....|++||||||..+-.+. ..+..+....+++|-|=|.|
T Consensus 319 ~~~vI~~T~~~~~~~~--l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~Q 375 (624)
T 2gk6_A 319 NADVICCTCVGAGDPR--LAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQ 375 (624)
T ss_dssp TCSEEEEETGGGGCGG--GTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred cCCEEEEcChhhcchh--hhcCCCCEEEEecccccCcHH----HHHHHHhcCCeEEEecChhc
No 206
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=31.05 E-value=1.1e+02 Score=31.21 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=50.2
Q ss_pred cccCHHHH-HHHHHHHHhh--cCCeEEEeehhHHHHHHHHHHHHH----cCCeEEEEcCCCCHHHHHHHHHHhccCCCCc
Q 001037 264 KSCGKLWI-LDRILIKLQR--TGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDC 336 (1179)
Q Consensus 264 ~~SgKl~~-L~~IL~el~~--~g~KVLIFSqft~~ldiLe~~L~~----~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i 336 (1179)
..+||-.. +.-++..+.. .+.++||.+.....+..+.+.+.. .++.+..+.|+.+..+... .+. .+
T Consensus 60 TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~----~~ 132 (224)
T 1qde_A 60 SGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GLR----DA 132 (224)
T ss_dssp TTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT----TC
T ss_pred CCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cCC----CC
Confidence 35788876 5555555432 356899999998887777766654 3788888999876444322 222 25
Q ss_pred cEEeeehhhh-----ccCCCCcccceeee
Q 001037 337 FIFLLSIRAA-----GRGLNLQSADTVII 360 (1179)
Q Consensus 337 ~VLLlST~AG-----geGLNLQ~AdtVIi 360 (1179)
.|++++.... ...+++...+.||+
T Consensus 133 ~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 133 QIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 5777665543 12344444554443
No 207
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=30.63 E-value=1e+02 Score=38.53 Aligned_cols=91 Identities=13% Similarity=0.164 Sum_probs=54.6
Q ss_pred cccCHHHHHHHHHHHHhhc-----CCeEEEeehhHHHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHhccCCC
Q 001037 264 KSCGKLWILDRILIKLQRT-----GHRVLLFSTMTKLLDILEEYLQWR----QLVYRRIDGTTSLEDRESAIVDFNSHDS 334 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~~-----g~KVLIFSqft~~ldiLe~~L~~~----Gi~~~rIdGsts~eeRe~iI~~Fn~~ds 334 (1179)
..+||.....-.+...... +.++||.+.....+..+...|... ++.+..++|+.+...+...+. .
T Consensus 272 TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~--~---- 345 (797)
T 4a2q_A 272 TGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI--E---- 345 (797)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH--H----
T ss_pred CCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh--C----
Confidence 4578987665555544433 778999999887777766666543 999999999987554432222 2
Q ss_pred CccEEeeehhhhccC-----C-CCcccceeee
Q 001037 335 DCFIFLLSIRAAGRG-----L-NLQSADTVII 360 (1179)
Q Consensus 335 ~i~VLLlST~AGgeG-----L-NLQ~AdtVIi 360 (1179)
.+.|+++++...-.- + .+...+.||+
T Consensus 346 ~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 377 (797)
T 4a2q_A 346 DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (797)
T ss_dssp TCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred CCCEEEEchHHHHHHHHhccccccccCCEEEE
Confidence 245777776654321 2 4455566554
No 208
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=29.91 E-value=77 Score=33.61 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=24.9
Q ss_pred CCccEEEEcCCccCCChhhHHHHHHHhh-cCCcEEEEecc
Q 001037 60 VDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLLLTGT 98 (1179)
Q Consensus 60 i~wdlVIIDEAHriKN~~Sk~tkaL~~L-ka~~RLLLTGT 98 (1179)
..+++|||||+|.+-.. ....+..+ .....++|+|.
T Consensus 88 ~~~dvViIDEaQ~l~~~---~ve~l~~L~~~gi~Vil~Gl 124 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDDR---ICEVANILAENGFVVIISGL 124 (223)
T ss_dssp TTCCEEEECSGGGSCTH---HHHHHHHHHHTTCEEEEECC
T ss_pred CCCCEEEEecCccCcHH---HHHHHHHHHhCCCeEEEEec
Confidence 35899999999997532 33344443 23567999996
No 209
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=28.72 E-value=70 Score=36.86 Aligned_cols=56 Identities=9% Similarity=0.172 Sum_probs=36.6
Q ss_pred hhhccCCccEEEEcCCccCCChhhHHHHHHHh-hc--CCcEEEEeccCCCCChHHHHHHHhh
Q 001037 55 SKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YR--CQRRLLLTGTPLQNDLKELWSLLNL 113 (1179)
Q Consensus 55 ~~L~ki~wdlVIIDEAHriKN~~Sk~tkaL~~-Lk--a~~RLLLTGTPiqN~l~EL~sLL~f 113 (1179)
..+.....++||+||+|.+++. ..++.++.. +. ...+++++.||-..+ -++.+...
T Consensus 267 ~slrG~~~~~viiDE~a~~~~~-~el~~al~~~ls~~~~~kiiiiSTP~g~n--~fy~l~~~ 325 (385)
T 2o0j_A 267 DAVRGNSFAMIYIEDCAFIPNF-HDSWLAIQPVISSGRRSKIIITTTPNGLN--HFYDIWTA 325 (385)
T ss_dssp HHHHTSCCSEEEEESGGGSTTH-HHHHHHHHHHHHSTTCCEEEEEECCCSSS--HHHHHHHH
T ss_pred CCccCCCCCEEEechhhhcCCC-HHHHHHHHHHhhcCCCCcEEEEeCCCCch--hHHHHHHH
Confidence 3455667899999999999863 244444443 33 346888899996553 55555443
No 210
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=28.39 E-value=1e+02 Score=27.89 Aligned_cols=96 Identities=14% Similarity=0.019 Sum_probs=56.1
Q ss_pred CCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhc-----cCC-CCcccc
Q 001037 283 GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG-----RGL-NLQSAD 356 (1179)
Q Consensus 283 g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGg-----eGL-NLQ~Ad 356 (1179)
+..|..+......+.. +... +..+.++-.++..+-..++..++.....+.|++++..... .-+ ....+.
T Consensus 27 ~~~v~~~~~~~~~~~~----~~~~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g 101 (135)
T 3eqz_A 27 FGNVEAFQHPRAFLTL----SLNK-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLN 101 (135)
T ss_dssp CSCEEEESCHHHHTTS----CCCT-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCE
T ss_pred cceeeeecCHHHHHHh----hccC-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCC
Confidence 4455555554333322 2233 7788888777766666777777765566778777754331 111 111222
Q ss_pred eeeecCCCCCcchHHHHhhcccccCCc
Q 001037 357 TVIIYDPDPNPKNEEQAVARAHRIGQK 383 (1179)
Q Consensus 357 tVIi~D~pWNP~~~eQAiGRIhRIGQk 383 (1179)
..-++.-|+++..+.+++.++..-++.
T Consensus 102 ~~~~l~KP~~~~~l~~~l~~~~~~~~~ 128 (135)
T 3eqz_A 102 VINTFTKPINTEVLTCFLTSLSNRQAE 128 (135)
T ss_dssp EEEEEESSCCHHHHHHHHHHHSCCC--
T ss_pred cceeeCCCCCHHHHHHHHHHHHhhccc
Confidence 233455688999999999998765543
No 211
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=27.80 E-value=25 Score=36.71 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=23.2
Q ss_pred ccEEEEcCCccCCC---hhhHHHHHHHhhc----CCcEEEEeccC
Q 001037 62 WKYIIIDEAQRMKD---RESVLARDLDRYR----CQRRLLLTGTP 99 (1179)
Q Consensus 62 wdlVIIDEAHriKN---~~Sk~tkaL~~Lk----a~~RLLLTGTP 99 (1179)
-.+|||||||.+-+ ......+.+..+. ...-++|.+.|
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 56899999999832 2222224444442 22357888887
No 212
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=27.07 E-value=3.4e+02 Score=28.06 Aligned_cols=72 Identities=10% Similarity=0.110 Sum_probs=45.4
Q ss_pred CCeEEEeehhHHHHHHHHHHHHH----cCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhc-----cCCCCc
Q 001037 283 GHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG-----RGLNLQ 353 (1179)
Q Consensus 283 g~KVLIFSqft~~ldiLe~~L~~----~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGg-----eGLNLQ 353 (1179)
+.++||.+..+..+..+.+.+.. .++.++.+.|+......... .. ..+.|++++....- ..+++.
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~---~~~~Ivv~Tp~~l~~~l~~~~~~~~ 173 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---VQ---MGCHLLVATPGRLVDFIEKNKISLE 173 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---HS---SCCSEEEECHHHHHHHHHTTSBCCT
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---hC---CCCCEEEECHHHHHHHHHcCCCChh
Confidence 35899999998887777666654 36788888888765443322 22 24567777766543 134555
Q ss_pred ccceeee
Q 001037 354 SADTVII 360 (1179)
Q Consensus 354 ~AdtVIi 360 (1179)
..+.||+
T Consensus 174 ~~~~lVi 180 (253)
T 1wrb_A 174 FCKYIVL 180 (253)
T ss_dssp TCCEEEE
T ss_pred hCCEEEE
Confidence 5565554
No 213
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=26.61 E-value=3e+02 Score=25.12 Aligned_cols=100 Identities=10% Similarity=0.003 Sum_probs=53.1
Q ss_pred HHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCC--CCccEEeeehhhhccC-CCC
Q 001037 276 LIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD--SDCFIFLLSIRAAGRG-LNL 352 (1179)
Q Consensus 276 L~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~d--s~i~VLLlST~AGgeG-LNL 352 (1179)
|..+......|..+......+..+ ....+..+.++-.++..+-..++...+... ..+.|++++......- ...
T Consensus 19 l~~~l~~~~~v~~~~~~~~a~~~~----~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~ 94 (140)
T 3n53_A 19 LKNFLDSEYLVIESKNEKEALEQI----DHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNG 94 (140)
T ss_dssp HHHHHTTTSEEEEESSHHHHHHHH----HHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTT
T ss_pred HHHHHHhcceEEEeCCHHHHHHHH----hcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHH
Confidence 333333335666666555555444 345678888887776656566677776533 5677777775432221 111
Q ss_pred cccceeeecCCCCCcchHHHHhhcccc
Q 001037 353 QSADTVIIYDPDPNPKNEEQAVARAHR 379 (1179)
Q Consensus 353 Q~AdtVIi~D~pWNP~~~eQAiGRIhR 379 (1179)
..+...-++--|+++..+.+++.++.+
T Consensus 95 ~~~g~~~~l~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 95 LHSGADDYLTKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp TTCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HhcCCCeeeeCCCCHHHHHHHHHHHHh
Confidence 122222233457899999988888765
No 214
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=26.27 E-value=2.6e+02 Score=25.44 Aligned_cols=95 Identities=11% Similarity=-0.023 Sum_probs=54.0
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhcc--CCCCccEEeeehhhhccC-CCCccccee
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS--HDSDCFIFLLSIRAAGRG-LNLQSADTV 358 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~--~ds~i~VLLlST~AGgeG-LNLQ~AdtV 358 (1179)
.|..|..+......+.. +....+..+.++-.++..+-..++...+. ....+.|++++......- ...-.+...
T Consensus 30 ~g~~v~~~~~~~~a~~~----l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~ 105 (142)
T 3cg4_A 30 AGFHIISADSGGQCIDL----LKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVV 105 (142)
T ss_dssp TTCEEEEESSHHHHHHH----HHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEE
T ss_pred CCeEEEEeCCHHHHHHH----HHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCcc
Confidence 36677666555444443 34456778888765543333445555554 345677777775433221 122222233
Q ss_pred eecCCCCCcchHHHHhhccccc
Q 001037 359 IIYDPDPNPKNEEQAVARAHRI 380 (1179)
Q Consensus 359 Ii~D~pWNP~~~eQAiGRIhRI 380 (1179)
-++.-|.++..+.+++.++.+.
T Consensus 106 ~~l~kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 106 DYITKPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp EEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHH
Confidence 3445578898888888887654
No 215
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=25.31 E-value=1.8e+02 Score=34.51 Aligned_cols=77 Identities=12% Similarity=0.097 Sum_probs=58.1
Q ss_pred ccCHHHHHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehh
Q 001037 265 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 344 (1179)
Q Consensus 265 ~SgKl~~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~ 344 (1179)
.+||-.+ -++.-+.. +.++||.+.....+....+.|...|+.+..++|+.+..++...+..+.. +.+.|+++++.
T Consensus 50 GsGKTl~--~~lp~l~~-~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~--~~~~ilv~Tpe 124 (523)
T 1oyw_A 50 GGGKSLC--YQIPALLL-NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRT--GQIRLLYIAPE 124 (523)
T ss_dssp HHHHHHH--HHHHHHHS-SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHH--TCCSEEEECHH
T ss_pred CcHHHHH--HHHHHHHh-CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECHH
Confidence 3566542 22333332 4578999999999999999999999999999999998888888888774 34667888776
Q ss_pred hh
Q 001037 345 AA 346 (1179)
Q Consensus 345 AG 346 (1179)
..
T Consensus 125 ~l 126 (523)
T 1oyw_A 125 RL 126 (523)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 216
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=25.25 E-value=1.8e+02 Score=26.53 Aligned_cols=95 Identities=17% Similarity=0.094 Sum_probs=56.6
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhcc--CCCCccEEeeehhhhccCC--CCcccce
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS--HDSDCFIFLLSIRAAGRGL--NLQSADT 357 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~--~ds~i~VLLlST~AGgeGL--NLQ~Adt 357 (1179)
.|..|..+......+..+ ....+..+.++-.++..+-..++..++. ....+.|++++......-+ ....+..
T Consensus 29 ~g~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~ 104 (140)
T 3grc_A 29 GGFDSDMVHSAAQALEQV----ARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAV 104 (140)
T ss_dssp TTCEEEEECSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCC
T ss_pred CCCeEEEECCHHHHHHHH----HhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCC
Confidence 566777766655544443 4567888888866655445566666664 3456777777754422111 2222222
Q ss_pred eeecCCCCCcchHHHHhhccccc
Q 001037 358 VIIYDPDPNPKNEEQAVARAHRI 380 (1179)
Q Consensus 358 VIi~D~pWNP~~~eQAiGRIhRI 380 (1179)
.-++.-|.++..+.+++.++.+-
T Consensus 105 ~~~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 105 STWLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp CEEECSSCCHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCHHHHHHHHHHHHHh
Confidence 23345678999999988888653
No 217
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=25.02 E-value=82 Score=32.48 Aligned_cols=51 Identities=24% Similarity=0.431 Sum_probs=31.8
Q ss_pred CccEEEEcCCccCCChhhHHHHHHHhh-cCCcEEEEecc--CCC----CChHHHHHHHhhh
Q 001037 61 DWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLLLTGT--PLQ----NDLKELWSLLNLL 114 (1179)
Q Consensus 61 ~wdlVIIDEAHriKN~~Sk~tkaL~~L-ka~~RLLLTGT--Piq----N~l~EL~sLL~fL 114 (1179)
.+++|||||++.+... ....+..+ .....++++|- .++ +...+|..+.+.+
T Consensus 81 ~~dvViIDEaqfl~~~---~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V 138 (191)
T 1xx6_A 81 DTEVIAIDEVQFFDDE---IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFV 138 (191)
T ss_dssp TCSEEEECSGGGSCTH---HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEE
T ss_pred cCCEEEEECCCCCCHH---HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccE
Confidence 4899999999998422 24445554 33557888875 222 4455566665555
No 218
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=24.94 E-value=90 Score=31.23 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=31.4
Q ss_pred cCHHHHHHHHHHHHhh------cCCeEEEeehhHHHHHH-HHHHHHH---cCCeEEEEcCCCCH
Q 001037 266 CGKLWILDRILIKLQR------TGHRVLLFSTMTKLLDI-LEEYLQW---RQLVYRRIDGTTSL 319 (1179)
Q Consensus 266 SgKl~~L~~IL~el~~------~g~KVLIFSqft~~ldi-Le~~L~~---~Gi~~~rIdGsts~ 319 (1179)
+||-.....++..+.. .+.++||.+.....+.. +.+.+.. .++.+..++|+...
T Consensus 59 sGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~ 122 (216)
T 3b6e_A 59 SGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQL 122 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---C
T ss_pred CCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCccc
Confidence 4565544444433321 26789999988777665 5544443 36788888887643
No 219
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=24.42 E-value=2.5e+02 Score=32.07 Aligned_cols=91 Identities=19% Similarity=0.180 Sum_probs=59.4
Q ss_pred cccCHHHH-HHHHHHHHhhc-------CCeEEEeehhHHHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHhcc
Q 001037 264 KSCGKLWI-LDRILIKLQRT-------GHRVLLFSTMTKLLDILEEYLQWR----QLVYRRIDGTTSLEDRESAIVDFNS 331 (1179)
Q Consensus 264 ~~SgKl~~-L~~IL~el~~~-------g~KVLIFSqft~~ldiLe~~L~~~----Gi~~~rIdGsts~eeRe~iI~~Fn~ 331 (1179)
..+||..+ +.-++..+... +.++||.+..+..+..+.+.+... ++.+..+.|+.+.......+ .
T Consensus 102 TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~- 177 (434)
T 2db3_A 102 TGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI---T- 177 (434)
T ss_dssp TTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH---T-
T ss_pred CCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh---h-
Confidence 45788874 45566655443 458999999998888877777653 57788899998865543332 2
Q ss_pred CCCCccEEeeehhhhc-----cCCCCcccceeee
Q 001037 332 HDSDCFIFLLSIRAAG-----RGLNLQSADTVII 360 (1179)
Q Consensus 332 ~ds~i~VLLlST~AGg-----eGLNLQ~AdtVIi 360 (1179)
..+.|++++....- ..++|...+.||+
T Consensus 178 --~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVl 209 (434)
T 2db3_A 178 --RGCHVVIATPGRLLDFVDRTFITFEDTRFVVL 209 (434)
T ss_dssp --TCCSEEEECHHHHHHHHHTTSCCCTTCCEEEE
T ss_pred --cCCCEEEEChHHHHHHHHhCCcccccCCeEEE
Confidence 24567777765532 2345666776664
No 220
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=23.78 E-value=1.8e+02 Score=27.63 Aligned_cols=47 Identities=11% Similarity=0.190 Sum_probs=41.0
Q ss_pred eEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhcc
Q 001037 285 RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 331 (1179)
Q Consensus 285 KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~ 331 (1179)
-+++|+.-...+.-|...++..|..++.+........|.+.++.|..
T Consensus 4 ifvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefek 50 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEK 50 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHT
T ss_pred EEEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHH
Confidence 36788888888888888888899999999999988888899999985
No 221
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=23.75 E-value=4.2e+02 Score=26.18 Aligned_cols=77 Identities=12% Similarity=0.085 Sum_probs=48.2
Q ss_pred cccCHHHHHH-HHHHHHhh--cCCeEEEeehhHHHHHHHHHHHHHc-----CCeEEEEcCCCCHHHHHHHHHHhccCCCC
Q 001037 264 KSCGKLWILD-RILIKLQR--TGHRVLLFSTMTKLLDILEEYLQWR-----QLVYRRIDGTTSLEDRESAIVDFNSHDSD 335 (1179)
Q Consensus 264 ~~SgKl~~L~-~IL~el~~--~g~KVLIFSqft~~ldiLe~~L~~~-----Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~ 335 (1179)
..+||-.+.. -++..+.. .+.++||.+.....+..+.+.+... ++.+..+.|+....+.. ..+. ..
T Consensus 49 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~---~~ 122 (206)
T 1vec_A 49 NGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI---MRLD---DT 122 (206)
T ss_dssp SSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHH---HHTT---SC
T ss_pred CCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHH---HhcC---CC
Confidence 3567876433 34444322 3458999999988877777766543 67888999998765432 2232 24
Q ss_pred ccEEeeehhhh
Q 001037 336 CFIFLLSIRAA 346 (1179)
Q Consensus 336 i~VLLlST~AG 346 (1179)
+.|++++....
T Consensus 123 ~~i~v~T~~~l 133 (206)
T 1vec_A 123 VHVVIATPGRI 133 (206)
T ss_dssp CSEEEECHHHH
T ss_pred CCEEEeCHHHH
Confidence 56777766543
No 222
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=23.60 E-value=3.5e+02 Score=29.79 Aligned_cols=91 Identities=15% Similarity=0.147 Sum_probs=56.0
Q ss_pred cccCHHHHHH-HHHHHHhh--cCCeEEEeehhHHHHHHHHHHHHHc----CCeEEEEcCCCCHHHHHHHHHHhccCCCCc
Q 001037 264 KSCGKLWILD-RILIKLQR--TGHRVLLFSTMTKLLDILEEYLQWR----QLVYRRIDGTTSLEDRESAIVDFNSHDSDC 336 (1179)
Q Consensus 264 ~~SgKl~~L~-~IL~el~~--~g~KVLIFSqft~~ldiLe~~L~~~----Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i 336 (1179)
..+||-.... -++..+.. .+.++||.+.....+..+.+.+... ++.+..+.|+....+.. .... ..+
T Consensus 67 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~---~~~ 140 (400)
T 1s2m_A 67 NGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDI---LRLN---ETV 140 (400)
T ss_dssp TTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHH---HHTT---SCC
T ss_pred CCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHH---HHhc---CCC
Confidence 3578886543 33333322 4568999999988887777666643 78889999988754332 2222 345
Q ss_pred cEEeeehhhh-----ccCCCCcccceeee
Q 001037 337 FIFLLSIRAA-----GRGLNLQSADTVII 360 (1179)
Q Consensus 337 ~VLLlST~AG-----geGLNLQ~AdtVIi 360 (1179)
.|++++.... ...+++...+.||+
T Consensus 141 ~Ivv~T~~~l~~~~~~~~~~~~~~~~vIi 169 (400)
T 1s2m_A 141 HILVGTPGRVLDLASRKVADLSDCSLFIM 169 (400)
T ss_dssp SEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred CEEEEchHHHHHHHHhCCcccccCCEEEE
Confidence 6777775543 22345666666665
No 223
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=23.28 E-value=62 Score=40.84 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=0.0
Q ss_pred CCCEEEEcHHHHHhchhhhccCCccEEEEcCCccCCChhhHHHHHHHhhcCCcEEEEeccCCC
Q 001037 39 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 101 (1179)
Q Consensus 39 ~~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriKN~~Sk~tkaL~~Lka~~RLLLTGTPiq 101 (1179)
..+||++|...+. ...|.. .|++||||||..+ +.....+..+....+++|-|=|.|
T Consensus 498 ~a~VI~~T~~~~~--~~~L~~-~fd~viIDEA~q~----~e~~~li~l~~~~~~lilvGD~~Q 553 (802)
T 2xzl_A 498 KADVVCCTCVGAG--DKRLDT-KFRTVLIDESTQA----SEPECLIPIVKGAKQVILVGDHQQ 553 (802)
T ss_dssp TCSEEEEETTGGG--CTTCCS-CCSEEEETTGGGS----CHHHHHHHHTTTBSEEEEEECTTS
T ss_pred cCCEEEechhhcC--hHHHhc-cCCEEEEECcccc----chHHHHHHHHhCCCEEEEEeCccc
No 224
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=23.22 E-value=54 Score=41.38 Aligned_cols=56 Identities=25% Similarity=0.294 Sum_probs=0.0
Q ss_pred CCEEEEcHHHHHhchhhhccCCccEEEEcCCccCCChhhHHHHHHHhhcCCcEEEEeccCCC
Q 001037 40 FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 101 (1179)
Q Consensus 40 ~dVVITTYE~L~~d~~~L~ki~wdlVIIDEAHriKN~~Sk~tkaL~~Lka~~RLLLTGTPiq 101 (1179)
.+||++|...+.... |....|++||||||..+-.+. ..+..+....+++|-|=|.|
T Consensus 496 a~VI~~T~~~~~~~~--l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~Q 551 (800)
T 2wjy_A 496 ADVICCTCVGAGDPR--LAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQ 551 (800)
T ss_dssp CSEEEEETGGGGCTT--TTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTS
T ss_pred CCEEEEchhhhCChh--hhcCCCCEEEEECCCCCCcHH----HHHHHHhcCCeEEEeccccc
No 225
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=23.07 E-value=4.3e+02 Score=28.35 Aligned_cols=90 Identities=18% Similarity=0.216 Sum_probs=56.4
Q ss_pred cccCHHHHHHHHHHHHhh--cCCeEEEeehhHHHHHHHHHHHHH----cCCeEEEEcCCCCHHHHHHHHHHhccCCCCcc
Q 001037 264 KSCGKLWILDRILIKLQR--TGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337 (1179)
Q Consensus 264 ~~SgKl~~L~~IL~el~~--~g~KVLIFSqft~~ldiLe~~L~~----~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~ 337 (1179)
..+||-....-.+..+.. .+.++||.+.....+..+.+.+.. .++.+..+.|+....+....+ . .+.
T Consensus 53 TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~----~~~ 125 (367)
T 1hv8_A 53 TGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL---K----NAN 125 (367)
T ss_dssp SSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH---H----TCS
T ss_pred CCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhc---C----CCC
Confidence 457888765544444432 467899999988887777777765 367888899988765543333 2 234
Q ss_pred EEeeehhhhc-----cCCCCcccceeee
Q 001037 338 IFLLSIRAAG-----RGLNLQSADTVII 360 (1179)
Q Consensus 338 VLLlST~AGg-----eGLNLQ~AdtVIi 360 (1179)
|++++....- ..+++...+.||+
T Consensus 126 iiv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 126 IVVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp EEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred EEEecHHHHHHHHHcCCcccccCCEEEE
Confidence 6666655432 1244555555554
No 226
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=23.00 E-value=75 Score=38.41 Aligned_cols=54 Identities=9% Similarity=0.177 Sum_probs=35.3
Q ss_pred hhhccCCccEEEEcCCccCCChhhHHHHHHHh-hc--CCcEEEEeccCCCCChHHHHHHH
Q 001037 55 SKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YR--CQRRLLLTGTPLQNDLKELWSLL 111 (1179)
Q Consensus 55 ~~L~ki~wdlVIIDEAHriKN~~Sk~tkaL~~-Lk--a~~RLLLTGTPiqN~l~EL~sLL 111 (1179)
..+.....+++|+||+|.+++.. .+..++.. +. ...++++++||-.. .-++.++
T Consensus 267 ~~lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~~~~~~~ii~isTP~~~--~~~y~~~ 323 (592)
T 3cpe_A 267 DAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISSGRRSKIIITTTPNGL--NHFYDIW 323 (592)
T ss_dssp HHHHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHSSSSCCEEEEEECCCTT--SHHHHHH
T ss_pred CCccCCCcceEEEehhccCCchh-HHHHHHHHHhccCCCceEEEEeCCCCc--hhHHHHH
Confidence 34455678999999999998742 45555543 33 34689999999655 3344443
No 227
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=22.49 E-value=2.1e+02 Score=26.26 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=42.6
Q ss_pred HHHHHHHhhcCCeEEEeeh------hHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeee
Q 001037 273 DRILIKLQRTGHRVLLFST------MTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 342 (1179)
Q Consensus 273 ~~IL~el~~~g~KVLIFSq------ft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlS 342 (1179)
...+..+. ..++|+||+. +=........+|...|+.|..++=....+.+..+..... ...+.++++.
T Consensus 8 ~~~v~~~i-~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g--~~tvP~ifi~ 80 (109)
T 3ipz_A 8 KDTLEKLV-NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSN--WPTFPQLYIG 80 (109)
T ss_dssp HHHHHHHH-TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHT--CSSSCEEEET
T ss_pred HHHHHHHH-ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHC--CCCCCeEEEC
Confidence 34444444 3578999987 456778888899999999887764444455555444433 3445455554
No 228
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=22.47 E-value=65 Score=34.75 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=24.0
Q ss_pred CccEEEEcCCccCCChhhHHHHHHHhh-cCCcEEEEecc
Q 001037 61 DWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLLLTGT 98 (1179)
Q Consensus 61 ~wdlVIIDEAHriKN~~Sk~tkaL~~L-ka~~RLLLTGT 98 (1179)
.+++|||||++.+.. ....+..+ .....+++||-
T Consensus 90 ~~dvViIDEaQF~~~----v~el~~~l~~~gi~VI~~GL 124 (234)
T 2orv_A 90 GVAVIGIDEGQFFPD----IVEFCEAMANAGKTVIVAAL 124 (234)
T ss_dssp TCSEEEESSGGGCTT----HHHHHHHHHHTTCEEEEECC
T ss_pred cCCEEEEEchhhhhh----HHHHHHHHHhCCCEEEEEec
Confidence 589999999999953 44444444 34557888884
No 229
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=22.28 E-value=61 Score=29.83 Aligned_cols=38 Identities=11% Similarity=0.102 Sum_probs=31.9
Q ss_pred hcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCC
Q 001037 281 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 318 (1179)
Q Consensus 281 ~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts 318 (1179)
..+..|||||..-.........|...|+.+..+.|++.
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 35678999998877777888999999999999999863
No 230
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=22.14 E-value=2.3e+02 Score=25.79 Aligned_cols=90 Identities=7% Similarity=-0.101 Sum_probs=53.0
Q ss_pred cCCeEEEeehhHHHHHHHHHHHHH-cCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeee-hhhhccCCCCcc-ccee
Q 001037 282 TGHRVLLFSTMTKLLDILEEYLQW-RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS-IRAAGRGLNLQS-ADTV 358 (1179)
Q Consensus 282 ~g~KVLIFSqft~~ldiLe~~L~~-~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlS-T~AGgeGLNLQ~-AdtV 358 (1179)
.|..|..+......+.. +.. ..+..+.++-.++..+-..++...+.....+.|++++ .... ... ... |+.
T Consensus 38 ~g~~v~~~~~~~~al~~----l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~-~~~-~~~~~~~- 110 (138)
T 2b4a_A 38 LGAEVTVHPSGSAFFQH----RSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRHE-LIE-SSEHNLS- 110 (138)
T ss_dssp TTCEEEEESSHHHHHHT----GGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC---CCC-CSSSCEE-
T ss_pred cCCEEEEeCCHHHHHHH----HHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCCC-HHH-HHHHHHh-
Confidence 46667666554444433 334 5677888876665444456677776544567777776 3332 222 222 333
Q ss_pred eecCCCCCcchHHHHhhcccc
Q 001037 359 IIYDPDPNPKNEEQAVARAHR 379 (1179)
Q Consensus 359 Ii~D~pWNP~~~eQAiGRIhR 379 (1179)
++.-|+++..+.+++.++.+
T Consensus 111 -~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 111 -YLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp -EEESSCCHHHHHHHHHHTCC
T ss_pred -eeeCCCCHHHHHHHHHHHHH
Confidence 34457888888888888754
No 231
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=21.49 E-value=4.2e+02 Score=29.23 Aligned_cols=71 Identities=10% Similarity=0.143 Sum_probs=46.6
Q ss_pred CeEEEeehhHHHHHHHHHHHHH----cCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhc-----cCCCCcc
Q 001037 284 HRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG-----RGLNLQS 354 (1179)
Q Consensus 284 ~KVLIFSqft~~ldiLe~~L~~----~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGg-----eGLNLQ~ 354 (1179)
.++||.+.....+..+.+.+.. .++.++.+.|+....+... .+.. .+.|++++....- ..+++..
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~---~~~I~v~Tp~~l~~~l~~~~~~~~~ 175 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---DLER---GCHLLVATPGRLVDMMERGKIGLDF 175 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HHTT---CCSEEEECHHHHHHHHHTTSBCCTT
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---HhhC---CCCEEEEChHHHHHHHHcCCcChhh
Confidence 4699999998888777776654 4788899999987655433 2322 3567777765542 2345666
Q ss_pred cceeee
Q 001037 355 ADTVII 360 (1179)
Q Consensus 355 AdtVIi 360 (1179)
.+.||+
T Consensus 176 ~~~iVi 181 (417)
T 2i4i_A 176 CKYLVL 181 (417)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 666654
No 232
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=21.26 E-value=2.9e+02 Score=30.22 Aligned_cols=89 Identities=13% Similarity=0.120 Sum_probs=55.0
Q ss_pred ccCHHHH-HHHHHHHHhh--cCCeEEEeehhHHHHHHHHHHHHH----cCCeEEEEcCCCCHHHHHHHHHHhccCCCCcc
Q 001037 265 SCGKLWI-LDRILIKLQR--TGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCF 337 (1179)
Q Consensus 265 ~SgKl~~-L~~IL~el~~--~g~KVLIFSqft~~ldiLe~~L~~----~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~ 337 (1179)
.+||-.. +.-++..+.. .+.++||.+.....+..+.+.+.. .++.+..+.|+....+....+.. +.
T Consensus 68 GsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~ 140 (394)
T 1fuu_A 68 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-------AQ 140 (394)
T ss_dssp SHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHH-------CS
T ss_pred CChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCC-------CC
Confidence 4677755 3444444332 456899999998888777766654 47889999999887665544432 34
Q ss_pred EEeeehhhhc-----cCCCCcccceeee
Q 001037 338 IFLLSIRAAG-----RGLNLQSADTVII 360 (1179)
Q Consensus 338 VLLlST~AGg-----eGLNLQ~AdtVIi 360 (1179)
|++++....- ..+.+...+.||+
T Consensus 141 i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 141 IVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp EEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred EEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 6666655432 2334445555554
No 233
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=21.00 E-value=53 Score=32.63 Aligned_cols=41 Identities=24% Similarity=0.446 Sum_probs=24.6
Q ss_pred CCccEEEEcCCccCCChh-hHHHHHHHhhcCCcEEEEeccCC
Q 001037 60 VDWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLTGTPL 100 (1179)
Q Consensus 60 i~wdlVIIDEAHriKN~~-Sk~tkaL~~Lka~~RLLLTGTPi 100 (1179)
....+|||||+|.+.... ..+...+.......++++|++..
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 457899999999985321 22333333334555677776543
No 234
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=20.61 E-value=2.4e+02 Score=28.52 Aligned_cols=90 Identities=14% Similarity=0.169 Sum_probs=51.8
Q ss_pred ccCHHHH-HHHHHHHHhh--cCCeEEEeehhHHHHHHHHHHHHHc--------CCeEEEEcCCCCHHHHHHHHHHhccCC
Q 001037 265 SCGKLWI-LDRILIKLQR--TGHRVLLFSTMTKLLDILEEYLQWR--------QLVYRRIDGTTSLEDRESAIVDFNSHD 333 (1179)
Q Consensus 265 ~SgKl~~-L~~IL~el~~--~g~KVLIFSqft~~ldiLe~~L~~~--------Gi~~~rIdGsts~eeRe~iI~~Fn~~d 333 (1179)
.+||..+ +.-++..+.. .+.++||.+.....+..+.+.+... ++.+..+.|+....+. ...+ .
T Consensus 51 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~---~ 124 (219)
T 1q0u_A 51 GTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKA---LEKL---N 124 (219)
T ss_dssp SHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHT---TCCC---S
T ss_pred CChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHH---HHHc---C
Confidence 4577665 3444444332 3568999999888877766666542 6788888998753321 1112 2
Q ss_pred CCccEEeeehhhhcc-----CCCCcccceeee
Q 001037 334 SDCFIFLLSIRAAGR-----GLNLQSADTVII 360 (1179)
Q Consensus 334 s~i~VLLlST~AGge-----GLNLQ~AdtVIi 360 (1179)
..+.|++++....-. .+++...+.||+
T Consensus 125 ~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 125 VQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp SCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred CCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 245677776544321 344555555543
No 235
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=20.60 E-value=1e+02 Score=29.80 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhc
Q 001037 296 LDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 330 (1179)
Q Consensus 296 ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn 330 (1179)
...+..+|..+|+.|..++=++..+.|..++++.+
T Consensus 19 c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 19 QQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp HHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 36788899999999999999989999999999984
No 236
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=20.43 E-value=82 Score=33.41 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=24.3
Q ss_pred CccEEEEcCCccCCChhhHHHHHHHhh-cCCcEEEEecc
Q 001037 61 DWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLLLTGT 98 (1179)
Q Consensus 61 ~wdlVIIDEAHriKN~~Sk~tkaL~~L-ka~~RLLLTGT 98 (1179)
.+++||||||+.+... .. ..+..+ .....+++||-
T Consensus 101 ~~dvViIDEaQF~~~~--~V-~~l~~l~~~~~~Vi~~Gl 136 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGD--IV-EVVQVLANRGYRVIVAGL 136 (214)
T ss_dssp SCCEEEECCGGGSCTT--HH-HHHHHHHHTTCEEEEEEC
T ss_pred CCCEEEEECcccCCHH--HH-HHHHHHhhCCCEEEEEec
Confidence 4899999999998432 22 445554 34567888886
No 237
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=20.34 E-value=4.2e+02 Score=26.27 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhcCCeEEEeehhHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHhccCCCCccEEeeehhhhccCC
Q 001037 271 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGL 350 (1179)
Q Consensus 271 ~L~~IL~el~~~g~KVLIFSqft~~ldiLe~~L~~~Gi~~~rIdGsts~eeRe~iI~~Fn~~ds~i~VLLlST~AGgeGL 350 (1179)
.+.+.+..+......+.|.+........|+..|...|+.+..+++... .|. .. | .+.|--..-||
T Consensus 49 ~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~~---~~--v-~v~t~~~~KGl 113 (174)
T 3dmn_A 49 QVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RLA---PG--V-IVVPSFLAKGL 113 (174)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CCC---SS--E-EEEEGGGCTTC
T ss_pred HHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------ccC---CC--e-EEEEccccCCc
Confidence 344444442233467888888888899999999999999988876542 122 22 3 34445555676
Q ss_pred CCcccceeeecCCCC
Q 001037 351 NLQSADTVIIYDPDP 365 (1179)
Q Consensus 351 NLQ~AdtVIi~D~pW 365 (1179)
- .+.||++++..
T Consensus 114 E---f~~V~~~~~~~ 125 (174)
T 3dmn_A 114 E---FDAVIVWNANQ 125 (174)
T ss_dssp C---EEEEEEETCBT
T ss_pred C---CCEEEEecCCc
Confidence 5 78899988764
Done!