BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001039
(1179 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 130 bits (328), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 123/226 (54%), Gaps = 12/226 (5%)
Query: 853 FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQT 912
ISGSTD +K+W+ E TL GHT TVR ++ +VVSGS D ++ VWD +T
Sbjct: 171 IIISGSTDRTLKVWNAET--GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIET 228
Query: 913 SQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEY 972
Q L L GH A V CV+ G RV++ ++D VK+WD T+TC+ T+ ++ V +++
Sbjct: 229 GQCLHVLMGHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 287
Query: 973 DDSTGI-LAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMW 1031
D GI + +G D +WD+ G +H GH + + + +++G+ D T ++W
Sbjct: 288 D---GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW 344
Query: 1032 SISRGTCDAVLAC---HAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074
I G C L H V C++++ + +IT S DG ++ W+
Sbjct: 345 DIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWD 388
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 136/263 (51%), Gaps = 7/263 (2%)
Query: 854 FISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTS 913
+SGS D +K+W ++ G LR TL GHT V + ++SGS D+++ VW+ +T
Sbjct: 132 IVSGSDDNTLKVW-SAVTGKCLR-TLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG 189
Query: 914 QLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYD 973
+ + L GH + V C+ L +RV++ S D T+++WD+ T C+ + +AV C++YD
Sbjct: 190 ECIHTLYGHTSTVRCMH-LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 248
Query: 974 DSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSI 1033
+ +G D + +WD +H GHT + S++ D V++GS D + R+W +
Sbjct: 249 GRR--VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV 306
Query: 1034 SRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSA 1093
G C L H +E D +++G++D ++ W+ ++ ++ H SA
Sbjct: 307 ETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 364
Query: 1094 ILSINAGDHWLGIGAADNSMSLF 1116
+ + +++ + D ++ L+
Sbjct: 365 VTCLQFNKNFVITSSDDGTVKLW 387
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 146/311 (46%), Gaps = 25/311 (8%)
Query: 867 DPSLRGSELRA--TLKGHT-RTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHD 923
D + R EL++ LKGH + + ++VSGSDD ++ VW T + L L GH
Sbjct: 100 DTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 159
Query: 924 AQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGG 983
V +M +++ S D T+K+W+ T C+ T+ +S V CM + + +G
Sbjct: 160 GGVWSSQM-RDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGS 216
Query: 984 RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLA 1043
RDA +WDI G+ +H +GH +R ++ D V++G+ D+ ++W TC L
Sbjct: 217 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ 276
Query: 1044 CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHW 1103
H V +++ +++GS D +R W+ + C+ +T H S + D+
Sbjct: 277 GHTNRVYSLQFDGIH--VVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELKDNI 331
Query: 1104 LGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICS 1163
L G AD+++ ++ TG + Q + P K + V C+ + + +
Sbjct: 332 LVSGNADSTVKIWDIK---------TGQCL---QTLQGPNKHQSAVTCL--QFNKNFVIT 377
Query: 1164 GGRNGLLRLWE 1174
+G ++LW+
Sbjct: 378 SSDDGTVKLWD 388
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 24/149 (16%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWD 909
D +SGS D +++WD + TL GH + +VSG+ D +V +WD
Sbjct: 288 DGIHVVSGSLDTSIRVWD--VETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWD 345
Query: 910 KQTSQLLEELKG---HDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA 966
+T Q L+ L+G H + V+C++ + V+T+S DGTVK+WD++T
Sbjct: 346 IKTGQCLQTLQGPNKHQSAVTCLQ-FNKNFVITSSDDGTVKLWDLKTG------------ 392
Query: 967 VLCMEYDDSTGILAAGGRDAVANIWDIRA 995
E+ + L +GG V +W IRA
Sbjct: 393 ----EFIRNLVTLESGGSGGV--VWRIRA 415
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-5-
Nitrophenyl]benzamide
Length = 312
Score = 105 bits (261), Expect = 2e-22, Method: Composition-based stats.
Identities = 67/248 (27%), Positives = 122/248 (49%), Gaps = 14/248 (5%)
Query: 875 LRATLKGHTRTVRAIN-SDRGK-VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML 932
L+ TL GHT+ V ++ S G+ + S S D+ + +W + + + GH +S V
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 933 SGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991
S +L +AS D T+K+WDV + C+ T+ S+ V C ++ + ++ +G D IW
Sbjct: 75 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 992 DIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTC-DAVLACHAGP 1048
D++ G+ + H+ + ++ +RD +++ S D R+W + G C ++ P
Sbjct: 135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194
Query: 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINA-----GDHW 1103
V V++S + + I+ + D L+ W+ KC+K T H + I A G W
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKW 251
Query: 1104 LGIGAADN 1111
+ G+ DN
Sbjct: 252 IVSGSEDN 259
Score = 66.2 bits (160), Expect = 1e-10, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 13/192 (6%)
Query: 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVW 908
+ +SGS D V+IWD ++ + TL H+ V A+ N D +VS S D +W
Sbjct: 119 SNLIVSGSFDESVRIWD--VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 909 DKQTSQLLEELKGHD-AQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA 966
D + Q L+ L D VS V+ +G+ +L A+ D T+K+WD C+ T +
Sbjct: 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 236
Query: 967 VLCMEYDDS-TG--ILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGS 1023
C+ + S TG + +G D + IW+++ + K GHT + S I S
Sbjct: 237 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 296
Query: 1024 ----DDWTARMW 1031
+D T ++W
Sbjct: 297 AALENDKTIKLW 308
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 105 bits (261), Expect = 2e-22, Method: Composition-based stats.
Identities = 67/248 (27%), Positives = 122/248 (49%), Gaps = 14/248 (5%)
Query: 875 LRATLKGHTRTVRAIN-SDRGK-VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML 932
L+ TL GHT+ V ++ S G+ + S S D+ + +W + + + GH +S V
Sbjct: 11 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 70
Query: 933 SGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991
S +L +AS D T+K+WDV + C+ T+ S+ V C ++ + ++ +G D IW
Sbjct: 71 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130
Query: 992 DIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTC-DAVLACHAGP 1048
D++ G+ + H+ + ++ +RD +++ S D R+W + G C ++ P
Sbjct: 131 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 190
Query: 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINA-----GDHW 1103
V V++S + + I+ + D L+ W+ KC+K T H + I A G W
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKW 247
Query: 1104 LGIGAADN 1111
+ G+ DN
Sbjct: 248 IVSGSEDN 255
Score = 66.2 bits (160), Expect = 1e-10, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 13/192 (6%)
Query: 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVW 908
+ +SGS D V+IWD ++ + TL H+ V A+ N D +VS S D +W
Sbjct: 115 SNLIVSGSFDESVRIWD--VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172
Query: 909 DKQTSQLLEELKGHD-AQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA 966
D + Q L+ L D VS V+ +G+ +L A+ D T+K+WD C+ T +
Sbjct: 173 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 232
Query: 967 VLCMEYDDS-TG--ILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGS 1023
C+ + S TG + +G D + IW+++ + K GHT + S I S
Sbjct: 233 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 292
Query: 1024 ----DDWTARMW 1031
+D T ++W
Sbjct: 293 AALENDKTIKLW 304
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 105 bits (261), Expect = 2e-22, Method: Composition-based stats.
Identities = 67/248 (27%), Positives = 122/248 (49%), Gaps = 14/248 (5%)
Query: 875 LRATLKGHTRTVRAIN-SDRGK-VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML 932
L+ TL GHT+ V ++ S G+ + S S D+ + +W + + + GH +S V
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 74
Query: 933 SGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991
S +L +AS D T+K+WDV + C+ T+ S+ V C ++ + ++ +G D IW
Sbjct: 75 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 134
Query: 992 DIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTC-DAVLACHAGP 1048
D++ G+ + H+ + ++ +RD +++ S D R+W + G C ++ P
Sbjct: 135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 194
Query: 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINA-----GDHW 1103
V V++S + + I+ + D L+ W+ KC+K T H + I A G W
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKW 251
Query: 1104 LGIGAADN 1111
+ G+ DN
Sbjct: 252 IVSGSEDN 259
Score = 66.2 bits (160), Expect = 1e-10, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 13/192 (6%)
Query: 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVW 908
+ +SGS D V+IWD ++ + TL H+ V A+ N D +VS S D +W
Sbjct: 119 SNLIVSGSFDESVRIWD--VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 909 DKQTSQLLEELKGHD-AQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA 966
D + Q L+ L D VS V+ +G+ +L A+ D T+K+WD C+ T +
Sbjct: 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 236
Query: 967 VLCMEYDDS-TG--ILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGS 1023
C+ + S TG + +G D + IW+++ + K GHT + S I S
Sbjct: 237 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 296
Query: 1024 ----DDWTARMW 1031
+D T ++W
Sbjct: 297 AALENDKTIKLW 308
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 105 bits (261), Expect = 2e-22, Method: Composition-based stats.
Identities = 67/248 (27%), Positives = 122/248 (49%), Gaps = 14/248 (5%)
Query: 875 LRATLKGHTRTVRAIN-SDRGK-VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML 932
L+ TL GHT+ V ++ S G+ + S S D+ + +W + + + GH +S V
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 933 SGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991
S +L +AS D T+K+WDV + C+ T+ S+ V C ++ + ++ +G D IW
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 992 DIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTC-DAVLACHAGP 1048
D++ G+ + H+ + ++ +RD +++ S D R+W + G C ++ P
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINA-----GDHW 1103
V V++S + + I+ + D L+ W+ KC+K T H + I A G W
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKW 257
Query: 1104 LGIGAADN 1111
+ G+ DN
Sbjct: 258 IVSGSEDN 265
Score = 66.2 bits (160), Expect = 1e-10, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 13/192 (6%)
Query: 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVW 908
+ +SGS D V+IWD ++ + TL H+ V A+ N D +VS S D +W
Sbjct: 125 SNLIVSGSFDESVRIWD--VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 909 DKQTSQLLEELKGHD-AQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA 966
D + Q L+ L D VS V+ +G+ +L A+ D T+K+WD C+ T +
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Query: 967 VLCMEYDDS-TG--ILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGS 1023
C+ + S TG + +G D + IW+++ + K GHT + S I S
Sbjct: 243 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 302
Query: 1024 ----DDWTARMW 1031
+D T ++W
Sbjct: 303 AALENDKTIKLW 314
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated
Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 105 bits (261), Expect = 2e-22, Method: Composition-based stats.
Identities = 67/248 (27%), Positives = 122/248 (49%), Gaps = 14/248 (5%)
Query: 875 LRATLKGHTRTVRAIN-SDRGK-VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML 932
L+ TL GHT+ V ++ S G+ + S S D+ + +W + + + GH +S V
Sbjct: 14 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 73
Query: 933 SGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991
S +L +AS D T+K+WDV + C+ T+ S+ V C ++ + ++ +G D IW
Sbjct: 74 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 992 DIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTC-DAVLACHAGP 1048
D++ G+ + H+ + ++ +RD +++ S D R+W + G C ++ P
Sbjct: 134 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 193
Query: 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINA-----GDHW 1103
V V++S + + I+ + D L+ W+ KC+K T H + I A G W
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKW 250
Query: 1104 LGIGAADN 1111
+ G+ DN
Sbjct: 251 IVSGSEDN 258
Score = 66.2 bits (160), Expect = 1e-10, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 13/192 (6%)
Query: 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVW 908
+ +SGS D V+IWD ++ + TL H+ V A+ N D +VS S D +W
Sbjct: 118 SNLIVSGSFDESVRIWD--VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175
Query: 909 DKQTSQLLEELKGHD-AQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA 966
D + Q L+ L D VS V+ +G+ +L A+ D T+K+WD C+ T +
Sbjct: 176 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 235
Query: 967 VLCMEYDDS-TG--ILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGS 1023
C+ + S TG + +G D + IW+++ + K GHT + S I S
Sbjct: 236 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 295
Query: 1024 ----DDWTARMW 1031
+D T ++W
Sbjct: 296 AALENDKTIKLW 307
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 105 bits (261), Expect = 2e-22, Method: Composition-based stats.
Identities = 67/248 (27%), Positives = 122/248 (49%), Gaps = 14/248 (5%)
Query: 875 LRATLKGHTRTVRAIN-SDRGK-VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML 932
L+ TL GHT+ V ++ S G+ + S S D+ + +W + + + GH +S V
Sbjct: 20 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 79
Query: 933 SGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991
S +L +AS D T+K+WDV + C+ T+ S+ V C ++ + ++ +G D IW
Sbjct: 80 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 139
Query: 992 DIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTC-DAVLACHAGP 1048
D++ G+ + H+ + ++ +RD +++ S D R+W + G C ++ P
Sbjct: 140 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 199
Query: 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINA-----GDHW 1103
V V++S + + I+ + D L+ W+ KC+K T H + I A G W
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKW 256
Query: 1104 LGIGAADN 1111
+ G+ DN
Sbjct: 257 IVSGSEDN 264
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 13/192 (6%)
Query: 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVW 908
+ +SGS D V+IWD ++ + TL H+ V A+ N D +VS S D +W
Sbjct: 124 SNLIVSGSFDESVRIWD--VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181
Query: 909 DKQTSQLLEELKGHD-AQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA 966
D + Q L+ L D VS V+ +G+ +L A+ D T+K+WD C+ T +
Sbjct: 182 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 241
Query: 967 VLCMEYDDS-TG--ILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGS 1023
C+ + S TG + +G D + IW+++ + K GHT + S I S
Sbjct: 242 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 301
Query: 1024 ----DDWTARMW 1031
+D T ++W
Sbjct: 302 AALENDKTIKLW 313
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 159/328 (48%), Gaps = 25/328 (7%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLV 907
D S S D VK+W+ R +L TL GH+ +VR A + D + S SDD++V +
Sbjct: 191 DGQTIASASDDKTVKLWN---RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 247
Query: 908 WDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA 966
W++ QLL+ L GH + V+ V G+ + +AS D TVK+W+ R + T+ SS+
Sbjct: 248 WNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 305
Query: 967 VLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTK--WIRSIRMDRDTVITGSD 1024
V + + +A+ D +W+ R G+ + GH+ W + D T+ + SD
Sbjct: 306 VWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASD 364
Query: 1025 DWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCV 1084
D T ++W+ G L H+ V+ V +S + I + S D ++ W + + +
Sbjct: 365 DKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----QLL 419
Query: 1085 KNVTIHSSAI--LSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTP 1142
+ +T HSS++ ++ + D + + D ++ L++R + L +G S + G + +P
Sbjct: 420 QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRG--VAFSP 477
Query: 1143 QKTVAVVRCIASDLERKRICSGGRNGLL 1170
+ IAS + K + RNG L
Sbjct: 478 DG-----QTIASASDDKTVKLWNRNGQL 500
Score = 96.7 bits (239), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 154/326 (47%), Gaps = 25/326 (7%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLV 907
D S S D VK+W+ R +L TL GH+ +V A + D + S SDD++V +
Sbjct: 27 DGQTIASASDDKTVKLWN---RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 83
Query: 908 WDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA 966
W++ QLL+ L GH + V V G+ + +AS D TVK+W+ R + T+ SS+
Sbjct: 84 WNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 141
Query: 967 VLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTK--WIRSIRMDRDTVITGSD 1024
V + + +A+ D +W+ R G+ + GH+ W + D T+ + SD
Sbjct: 142 VWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 200
Query: 1025 DWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCV 1084
D T ++W+ G L H+ V+ V +S + I + S D ++ W + + +
Sbjct: 201 DKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----QLL 255
Query: 1085 KNVTIHSSAI--LSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTP 1142
+ +T HSS++ ++ + + D ++ L++R + L +G S + W + +P
Sbjct: 256 QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV--WGVAFSP 313
Query: 1143 QKTVAVVRCIASDLERKRICSGGRNG 1168
+ IAS + K + RNG
Sbjct: 314 DG-----QTIASASDDKTVKLWNRNG 334
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 114/230 (49%), Gaps = 12/230 (5%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLV 907
D S S D VK+W+ R +L TL GH+ +VR A + D + S SDD++V +
Sbjct: 355 DGQTIASASDDKTVKLWN---RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 411
Query: 908 WDKQTSQLLEELKGHDAQVSCVRMLSGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSA 966
W++ QLL+ L GH + V V ++ + +AS D TVK+W+ R + T+ SS+
Sbjct: 412 WNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 469
Query: 967 VLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSD 1024
V + + +A+ D +W+ R G+ + GH+ +R + D T+ + SD
Sbjct: 470 VRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 528
Query: 1025 DWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074
D T ++W+ G L H+ V V +S + I + SSD ++ W
Sbjct: 529 DKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 83/306 (27%), Positives = 149/306 (48%), Gaps = 22/306 (7%)
Query: 872 GSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCV 929
G + R L+ H+ +VR A + D + S SDD++V +W++ QLL+ L GH + V V
Sbjct: 5 GVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGV 63
Query: 930 RML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVA 988
G+ + +AS D TVK+W+ R + T+ SS+V + + +A+ D
Sbjct: 64 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 122
Query: 989 NIWDIRAGRQMHKFLGHTK--WIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHA 1046
+W+ R G+ + GH+ W + D T+ + SDD T ++W+ G L H+
Sbjct: 123 KLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS 180
Query: 1047 GPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGI 1106
V V +S + I + S D ++ W + + ++ +T HSS++ + I
Sbjct: 181 SSVWGVAFSPDGQTIASASDDKTVKLWNRNG----QLLQTLTGHSSSVRGVAFSPDGQTI 236
Query: 1107 GAA--DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSG 1164
+A D ++ L++R + L +G S ++G +R +T+A ASD + ++ +
Sbjct: 237 ASASDDKTVKLWNRNGQLLQTLTGHSSSVNG-VAFRPDGQTIAS----ASDDKTVKLWN- 290
Query: 1165 GRNGLL 1170
RNG L
Sbjct: 291 -RNGQL 295
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 104 bits (260), Expect = 2e-22, Method: Composition-based stats.
Identities = 67/248 (27%), Positives = 122/248 (49%), Gaps = 14/248 (5%)
Query: 875 LRATLKGHTRTVRAIN-SDRGK-VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML 932
L+ TL GHT+ V ++ S G+ + S S D+ + +W + + + GH +S V
Sbjct: 16 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 75
Query: 933 SGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991
S +L +AS D T+K+WDV + C+ T+ S+ V C ++ + ++ +G D IW
Sbjct: 76 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 135
Query: 992 DIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTC-DAVLACHAGP 1048
D++ G+ + H+ + ++ +RD +++ S D R+W + G C ++ P
Sbjct: 136 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 195
Query: 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINA-----GDHW 1103
V V++S + + I+ + D L+ W+ KC+K T H + I A G W
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKW 252
Query: 1104 LGIGAADN 1111
+ G+ DN
Sbjct: 253 IVSGSEDN 260
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 13/192 (6%)
Query: 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVW 908
+ +SGS D V+IWD ++ + TL H+ V A+ N D +VS S D +W
Sbjct: 120 SNLIVSGSFDESVRIWD--VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177
Query: 909 DKQTSQLLEELKGHD-AQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA 966
D + Q L+ L D VS V+ +G+ +L A+ D T+K+WD C+ T +
Sbjct: 178 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 237
Query: 967 VLCMEYDDS-TG--ILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGS 1023
C+ + S TG + +G D + IW+++ + K GHT + S I S
Sbjct: 238 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 297
Query: 1024 ----DDWTARMW 1031
+D T ++W
Sbjct: 298 AALENDKTIKLW 309
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 152/315 (48%), Gaps = 26/315 (8%)
Query: 814 KKIQSNIRIIRGHAGAITALHCV--TKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLR 871
+ I+SN R R ++ +HC T + V+ L D + +SG D +KIWD +
Sbjct: 110 ETIESNWRCGRH---SLQRIHCRSETSKGVYCLQYDDQK---IVSGLRDNTIKIWDKN-- 161
Query: 872 GSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRM 931
E + L GHT +V + D +++GS D +V VWD T ++L L H V +R
Sbjct: 162 TLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF 221
Query: 932 LSGERVLTASHDGTVKMWDVRTDTCV----ATVGRCSSAVLCMEYDDSTGILAAGGRDAV 987
+G V T S D ++ +WD+ + T + VG +AV +++DD + A+G D
Sbjct: 222 NNGMMV-TCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVDFDDKYIVSASG--DRT 277
Query: 988 ANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAG 1047
+W+ + GH + I ++ V++GS D T R+W I G C VL H
Sbjct: 278 IKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE 337
Query: 1048 PVQCVEYSSSDRGIITGSSDGLLRFWENDDA------GGIKCVKNVTIHSSAILSINAGD 1101
V+C+ + ++ I++G+ DG ++ W+ A G C++ + HS + + +
Sbjct: 338 LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE 395
Query: 1102 HWLGIGAADNSMSLF 1116
+ + D+++ ++
Sbjct: 396 FQIVSSSHDDTILIW 410
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 112/243 (46%), Gaps = 27/243 (11%)
Query: 935 ERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR 994
+++++ D T+K+WD T C + + +VLC++YD+ ++ G D+ +WD+
Sbjct: 144 QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER--VIITGSSDSTVRVWDVN 201
Query: 995 AGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGT---CDAVLACHAGPVQC 1051
G ++ + H + + +R + ++T S D + +W ++ T VL H V
Sbjct: 202 TGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 261
Query: 1052 VEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADN 1111
V++ D+ I++ S D ++ W + + V+ + H I + D + G++DN
Sbjct: 262 VDFD--DKYIVSASGDRTIKVW---NTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDN 316
Query: 1112 SMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLR 1171
++ L+ + R + +VRCI D KRI SG +G ++
Sbjct: 317 TIRLW---------------DIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIK 359
Query: 1172 LWE 1174
+W+
Sbjct: 360 VWD 362
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 23/174 (13%)
Query: 836 VTKREVWDLVGDRE-------DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA 888
+T R V LVG R D + +S S D +K+W+ S E TL GH R +
Sbjct: 246 ITLRRV--LVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS--TCEFVRTLNGHKRGIAC 301
Query: 889 INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKM 948
+ VVSGS D ++ +WD + L L+GH+ V C+R +R+++ ++DG +K+
Sbjct: 302 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR-FDNKRIVSGAYDGKIKV 360
Query: 949 WDVRT---------DTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDI 993
WD+ C+ T+ S V +++D+ + + D IWD
Sbjct: 361 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIWDF 412
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 28/145 (19%)
Query: 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATL 879
+R + GH I L DR +SGS+D +++WD G+ LR L
Sbjct: 289 VRTLNGHKRGIACLQ----------YRDR----LVVSGSSDNTIRLWDIEC-GACLRV-L 332
Query: 880 KGHTRTVRAINSDRGKVVSGSDDQSVLVWD---------KQTSQLLEELKGHDAQVSCVR 930
+GH VR I D ++VSG+ D + VWD + L L H +V R
Sbjct: 333 EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV--FR 390
Query: 931 MLSGE-RVLTASHDGTVKMWDVRTD 954
+ E +++++SHD T+ +WD D
Sbjct: 391 LQFDEFQIVSSSHDDTILIWDFLND 415
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 104 bits (260), Expect = 3e-22, Method: Composition-based stats.
Identities = 67/248 (27%), Positives = 122/248 (49%), Gaps = 14/248 (5%)
Query: 875 LRATLKGHTRTVRAIN-SDRGK-VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML 932
L+ TL GHT+ V ++ S G+ + S S D+ + +W + + + GH +S V
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 933 SGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991
S +L +AS D T+K+WDV + C+ T+ S+ V C ++ + ++ +G D IW
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 992 DIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTC-DAVLACHAGP 1048
D++ G+ + H+ + ++ +RD +++ S D R+W + G C ++ P
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINA-----GDHW 1103
V V++S + + I+ + D L+ W+ KC+K T H + I A G W
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKW 257
Query: 1104 LGIGAADN 1111
+ G+ DN
Sbjct: 258 IVSGSEDN 265
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 13/192 (6%)
Query: 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVW 908
+ +SGS D V+IWD ++ + TL H+ V A+ N D +VS S D +W
Sbjct: 125 SNLIVSGSFDESVRIWD--VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 909 DKQTSQLLEELKGHD-AQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA 966
D + Q L+ L D VS V+ +G+ +L A+ D T+K+WD C+ T +
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Query: 967 VLCMEYDDS-TG--ILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGS 1023
C+ + S TG + +G D + IW+++ + K GHT + S I S
Sbjct: 243 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 302
Query: 1024 ----DDWTARMW 1031
+D T ++W
Sbjct: 303 AALENDKTIKLW 314
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3 Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3 Peptide
Length = 334
Score = 104 bits (259), Expect = 3e-22, Method: Composition-based stats.
Identities = 67/248 (27%), Positives = 122/248 (49%), Gaps = 14/248 (5%)
Query: 875 LRATLKGHTRTVRAIN-SDRGK-VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML 932
L+ TL GHT+ V ++ S G+ + S S D+ + +W + + + GH +S V
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 96
Query: 933 SGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991
S +L +AS D T+K+WDV + C+ T+ S+ V C ++ + ++ +G D IW
Sbjct: 97 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 156
Query: 992 DIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTC-DAVLACHAGP 1048
D++ G+ + H+ + ++ +RD +++ S D R+W + G C ++ P
Sbjct: 157 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 216
Query: 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINA-----GDHW 1103
V V++S + + I+ + D L+ W+ KC+K T H + I A G W
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKW 273
Query: 1104 LGIGAADN 1111
+ G+ DN
Sbjct: 274 IVSGSEDN 281
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 13/192 (6%)
Query: 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVW 908
+ +SGS D V+IWD ++ + TL H+ V A+ N D +VS S D +W
Sbjct: 141 SNLIVSGSFDESVRIWD--VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 909 DKQTSQLLEELKGHD-AQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA 966
D + Q L+ L D VS V+ +G+ +L A+ D T+K+WD C+ T +
Sbjct: 199 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 258
Query: 967 VLCMEYDDS-TG--ILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGS 1023
C+ + S TG + +G D + IW+++ + K GHT + S I S
Sbjct: 259 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 318
Query: 1024 ----DDWTARMW 1031
+D T ++W
Sbjct: 319 AALENDKTIKLW 330
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone
Mark That Supports Euchromatin Maintenance
Length = 318
Score = 104 bits (259), Expect = 3e-22, Method: Composition-based stats.
Identities = 67/248 (27%), Positives = 122/248 (49%), Gaps = 14/248 (5%)
Query: 875 LRATLKGHTRTVRAIN-SDRGK-VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML 932
L+ TL GHT+ V ++ S G+ + S S D+ + +W + + + GH +S V
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 80
Query: 933 SGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991
S +L +AS D T+K+WDV + C+ T+ S+ V C ++ + ++ +G D IW
Sbjct: 81 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 140
Query: 992 DIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTC-DAVLACHAGP 1048
D++ G+ + H+ + ++ +RD +++ S D R+W + G C ++ P
Sbjct: 141 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 200
Query: 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINA-----GDHW 1103
V V++S + + I+ + D L+ W+ KC+K T H + I A G W
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKW 257
Query: 1104 LGIGAADN 1111
+ G+ DN
Sbjct: 258 IVSGSEDN 265
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 13/192 (6%)
Query: 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVW 908
+ +SGS D V+IWD ++ + TL H+ V A+ N D +VS S D +W
Sbjct: 125 SNLIVSGSFDESVRIWD--VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 909 DKQTSQLLEELKGHD-AQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA 966
D + Q L+ L D VS V+ +G+ +L A+ D T+K+WD C+ T +
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 242
Query: 967 VLCMEYDDS-TG--ILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGS 1023
C+ + S TG + +G D + IW+++ + K GHT + S I S
Sbjct: 243 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 302
Query: 1024 ----DDWTARMW 1031
+D T ++W
Sbjct: 303 AALENDKTIKLW 314
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 131/271 (48%), Gaps = 21/271 (7%)
Query: 871 RGSE-------LRATLKGHTRTVRAIN-SDRGK-VVSGSDDQSVLVWDKQTSQLLEELKG 921
RGSE L+ TL GHT+ V ++ S G+ + S S D+ + +W + + + G
Sbjct: 7 RGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 66
Query: 922 HDAQVSCVRMLSGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILA 980
H +S V S +L +AS D T+K+WDV + C+ T+ S+ V C ++ + ++
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 981 AGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTC 1038
+G D IWD++ G+ + H+ + ++ +RD +++ S D R+W + G C
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Query: 1039 DAVLACHAG-PVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI 1097
L PV V++S + + I+ + D L+ W D KC+K T H + I
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW---DYSKGKCLKTYTGHKNEKYCI 243
Query: 1098 NA-----GDHWLGIGAADNSMSLFHRPQERL 1123
A G W+ G+ DN + +++ + +
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 87/206 (42%), Gaps = 51/206 (24%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLV 907
D+ +S S D +KIWD S G L+ TLKGH+ V N +VSGS D+SV +
Sbjct: 79 DSNLLVSASDDKTLKIWDVS-SGKCLK-TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 908 WDKQTSQLLEELKGHDAQVS-----------------------------CVRML------ 932
WD +T + L+ L H VS C++ L
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 933 ---------SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS-TG--ILA 980
+G+ +L A+ D T+K+WD C+ T + C+ + S TG +
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 981 AGGRDAVANIWDIRAGRQMHKFLGHT 1006
+G D + IW+++ + K GHT
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQGHT 282
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 58/105 (55%), Gaps = 10/105 (9%)
Query: 853 FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSD----RGK-VVSGSDDQSVLV 907
+ ++ + D +K+WD S +G L+ T GH I ++ GK +VSGS+D V +
Sbjct: 209 YILAATLDNTLKLWDYS-KGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 266
Query: 908 WDKQTSQLLEELKGHDAQVSCVRMLSGERVLTAS---HDGTVKMW 949
W+ QT +++++L+GH V E ++ ++ +D T+K++
Sbjct: 267 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 126/254 (49%), Gaps = 14/254 (5%)
Query: 875 LRATLKGHTRTVRAIN-SDRGK-VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML 932
L+ TL GHT+ V ++ S G+ + S S D+ + +W + + + GH +S V
Sbjct: 39 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 98
Query: 933 SGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991
S +L +AS D T+K+WDV + C+ T+ S+ V C ++ + ++ +G D IW
Sbjct: 99 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 158
Query: 992 DIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTC-DAVLACHAGP 1048
D++ G+ + H+ + ++ +RD +++ S D R+W + G C ++ P
Sbjct: 159 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 218
Query: 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINA-----GDHW 1103
V V++S + + I+ + D L+ W D KC+K T H + I A G W
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLW---DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 275
Query: 1104 LGIGAADNSMSLFH 1117
+ G+ DN + +++
Sbjct: 276 IVSGSEDNLVYIWN 289
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 97/235 (41%), Gaps = 55/235 (23%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLV 907
D+ +S S D +KIWD S G L+ TLKGH+ V N +VSGS D+SV +
Sbjct: 100 DSNLLVSASDDKTLKIWDVS-SGKCLK-TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 157
Query: 908 WDKQTSQLLEELKGHDAQVS-----------------------------CVRML------ 932
WD +T + L+ L H VS C++ L
Sbjct: 158 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 217
Query: 933 ---------SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS-TG--ILA 980
+G+ +L A+ D T+K+WD C+ T + C+ + S TG +
Sbjct: 218 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 277
Query: 981 AGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGS----DDWTARMW 1031
+G D + IW+++ + K GHT + S I S +D T ++W
Sbjct: 278 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 103 bits (258), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 131/271 (48%), Gaps = 21/271 (7%)
Query: 871 RGSE-------LRATLKGHTRTVRAIN-SDRGK-VVSGSDDQSVLVWDKQTSQLLEELKG 921
RGSE L+ TL GHT+ V ++ S G+ + S S D+ + +W + + + G
Sbjct: 7 RGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 66
Query: 922 HDAQVSCVRMLSGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILA 980
H +S V S +L +AS D T+K+WDV + C+ T+ S+ V C ++ + ++
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 981 AGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTC 1038
+G D IWD++ G+ + H+ + ++ +RD +++ S D R+W + G C
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Query: 1039 DAVLACHAG-PVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI 1097
L PV V++S + + I+ + D L+ W D KC+K T H + I
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW---DYSKGKCLKTYTGHKNEKYCI 243
Query: 1098 NA-----GDHWLGIGAADNSMSLFHRPQERL 1123
A G W+ G+ DN + +++ + +
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 88/206 (42%), Gaps = 51/206 (24%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSD--RGKVVSGSDDQSVLV 907
D+ +S S D +KIWD S G L+ TLKGH+ V N + +VSGS D+SV +
Sbjct: 79 DSNLLVSASDDKTLKIWDVS-SGKCLK-TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 908 WDKQTSQLLEELKGHDAQVS-----------------------------CVRML------ 932
WD +T + L+ L H VS C++ L
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 933 ---------SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS-TG--ILA 980
+G+ +L A+ D T+K+WD C+ T + C+ + S TG +
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 981 AGGRDAVANIWDIRAGRQMHKFLGHT 1006
+G D + IW+++ + K GHT
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQGHT 282
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 10/104 (9%)
Query: 853 FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSD----RGK-VVSGSDDQSVLV 907
+ ++ + D +K+WD S +G L+ T GH I ++ GK +VSGS+D V +
Sbjct: 209 YILAATLDNTLKLWDYS-KGKCLK-TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 266
Query: 908 WDKQTSQLLEELKGHDAQVSCVRMLSGERVLTAS---HDGTVKM 948
W+ QT +++++L+GH V E ++ ++ +D T+K+
Sbjct: 267 WNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 310
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 103 bits (257), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 127/260 (48%), Gaps = 14/260 (5%)
Query: 875 LRATLKGHTRTVRAIN-SDRGK-VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML 932
L+ TL GHT+ V ++ S G+ + S S D+ + +W + + + GH +S V
Sbjct: 32 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 91
Query: 933 SGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991
S +L +AS D T+K+WDV + C+ T+ S+ V C ++ + ++ +G D IW
Sbjct: 92 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 151
Query: 992 DIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAG-P 1048
D++ G+ + H+ + ++ +RD +++ S D R+W + G C L P
Sbjct: 152 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 211
Query: 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINA-----GDHW 1103
V V++S + + I+ + D L+ W D KC+K T H + I A G W
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLW---DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 268
Query: 1104 LGIGAADNSMSLFHRPQERL 1123
+ G+ DN + +++ + +
Sbjct: 269 IVSGSEDNLVYIWNLQTKEI 288
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 97/235 (41%), Gaps = 55/235 (23%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLV 907
D+ +S S D +KIWD S G L+ TLKGH+ V N +VSGS D+SV +
Sbjct: 93 DSNLLVSASDDKTLKIWDVS-SGKCLK-TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 150
Query: 908 WDKQTSQLLEELKGHDAQVS-----------------------------CVRML------ 932
WD +T + L+ L H VS C++ L
Sbjct: 151 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 210
Query: 933 ---------SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS-TG--ILA 980
+G+ +L A+ D T+K+WD C+ T + C+ + S TG +
Sbjct: 211 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 270
Query: 981 AGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGS----DDWTARMW 1031
+G D + IW+++ + K GHT + S I S +D T ++W
Sbjct: 271 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 103 bits (256), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 125/270 (46%), Gaps = 30/270 (11%)
Query: 854 FISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDR-GKVV-SGSDDQSVLVWDKQ 911
+S S D +K+WD + TLKGHT +V+ I+ D GK++ S S D ++ +WD Q
Sbjct: 123 MVSASEDATIKVWD--YETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180
Query: 912 TSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCM 970
+ + + GHD VS V ++ +G+ +++AS D T+KMW+V+T CV T V +
Sbjct: 181 GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV 240
Query: 971 EYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDT------------ 1018
+ ++A+ D +W + + H + I ++
Sbjct: 241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 300
Query: 1019 ----------VITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDG 1068
+++GS D T +MW +S G C L H V+ V + S + I++ + D
Sbjct: 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360
Query: 1069 LLRFWENDDAGGIKCVKNVTIHSSAILSIN 1098
LR W D +C+K + H + S++
Sbjct: 361 TLRVW---DYKNKRCMKTLNAHEHFVTSLD 387
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Query: 853 FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDK 910
F +SGS D +K+WD S G L TL GH VR + +S ++S +DD+++ VWD
Sbjct: 310 FLLSGSRDKTIKMWDVST-GMCL-MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 911 QTSQLLEELKGHDAQVSCVRM-LSGERVLTASHDGTVKMWDVR 952
+ + ++ L H+ V+ + + V+T S D TVK+W+ R
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 5/140 (3%)
Query: 978 ILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISR 1035
++ + DA +WD G GHT ++ I D + + S D T ++W
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181
Query: 1036 GTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAIL 1095
C + H V V + I++ S D ++ WE CVK T H +
Sbjct: 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG---YCVKTFTGHREWVR 238
Query: 1096 SINAGDHWLGIGAADNSMSL 1115
+ I + N ++
Sbjct: 239 MVRPNQDGTLIASCSNDQTV 258
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 131/271 (48%), Gaps = 21/271 (7%)
Query: 871 RGSE-------LRATLKGHTRTVRAIN-SDRGK-VVSGSDDQSVLVWDKQTSQLLEELKG 921
RGSE L+ TL GHT+ V ++ S G+ + + S D+ + +W + + + G
Sbjct: 7 RGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISG 66
Query: 922 HDAQVSCVRMLSGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILA 980
H +S V S +L +AS D T+K+WDV + C+ T+ S+ V C ++ + ++
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 981 AGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTC 1038
+G D IWD++ G+ + H+ + ++ +RD +++ S D R+W + G C
Sbjct: 127 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Query: 1039 DAVLACHAG-PVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI 1097
L PV V++S + + I+ + D L+ W D KC+K T H + I
Sbjct: 187 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW---DYSKGKCLKTYTGHKNEKYCI 243
Query: 1098 NA-----GDHWLGIGAADNSMSLFHRPQERL 1123
A G W+ G+ DN + +++ + +
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 97/235 (41%), Gaps = 55/235 (23%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLV 907
D+ +S S D +KIWD S G L+ TLKGH+ V N +VSGS D+SV +
Sbjct: 79 DSNLLVSASDDKTLKIWDVS-SGKCLK-TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 908 WDKQTSQLLEELKGHDAQVS-----------------------------CVRML------ 932
WD +T + L+ L H VS C++ L
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 933 ---------SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS-TG--ILA 980
+G+ +L A+ D T+K+WD C+ T + C+ + S TG +
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 981 AGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGS----DDWTARMW 1031
+G D + IW+++ + K GHT + S I S +D T ++W
Sbjct: 257 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 100 bits (249), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 125/260 (48%), Gaps = 14/260 (5%)
Query: 875 LRATLKGHTRTVRAIN-SDRGK-VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML 932
L TL GHT+ V ++ S G+ + S S D+ + +W + + + GH +S V
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 933 SGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991
S +L +AS D T+K+WDV + C+ T+ S+ V C ++ + ++ +G D IW
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 992 DIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAG-P 1048
D++ G + H+ + ++ +RD +++ S D R+W + G C L P
Sbjct: 138 DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINA-----GDHW 1103
V V++S + + I+ + D L+ W D KC+K T H + I A G W
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLW---DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 254
Query: 1104 LGIGAADNSMSLFHRPQERL 1123
+ G+ DN + +++ + +
Sbjct: 255 IVSGSEDNMVYIWNLQTKEI 274
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 96/235 (40%), Gaps = 55/235 (23%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLV 907
D+ +S S D +KIWD S G L+ TLKGH+ V N +VSGS D+SV +
Sbjct: 79 DSNLLVSASDDKTLKIWDVS-SGKCLK-TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 908 WDKQTSQLLEELKGHDAQVS-----------------------------CVRML------ 932
WD +T L+ L H VS C++ L
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 933 ---------SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS-TG--ILA 980
+G+ +L A+ D T+K+WD C+ T + C+ + S TG +
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 981 AGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGS----DDWTARMW 1031
+G D + IW+++ + K GHT + S I S +D T ++W
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 125/260 (48%), Gaps = 14/260 (5%)
Query: 875 LRATLKGHTRTVRAIN-SDRGK-VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML 932
L TL GHT+ V ++ S G+ + S S D+ + +W + + + GH +S V
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 933 SGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991
S +L +AS D T+K+WDV + C+ T+ S+ V C ++ + ++ +G D IW
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 992 DIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAG-P 1048
D++ G + H+ + ++ +RD +++ S D R+W + G C L P
Sbjct: 138 DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP 197
Query: 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINA-----GDHW 1103
V V++S + + I+ + D L+ W D KC+K T H + I A G W
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLW---DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 254
Query: 1104 LGIGAADNSMSLFHRPQERL 1123
+ G+ DN + +++ + +
Sbjct: 255 IVSGSEDNMVYIWNLQTKEI 274
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 97/235 (41%), Gaps = 55/235 (23%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLV 907
D+ +S S D +KIWD S G L+ TLKGH+ V N +VSGS D+SV +
Sbjct: 79 DSNLLVSASDDKTLKIWDVS-SGKCLK-TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 908 WDKQTSQLLEELKGHDAQVSCVRM-LSGERVLTASHDGTVKMWDVRTDTCVATV------ 960
WD +T L+ L H VS V G ++++S+DG ++WD + C+ T+
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 961 ------------------------------GRC-------SSAVLCMEYDDS-TG--ILA 980
G+C + C+ + S TG +
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 256
Query: 981 AGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGS----DDWTARMW 1031
+G D + IW+++ + K GHT + S I S +D T ++W
Sbjct: 257 SGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 118/264 (44%), Gaps = 29/264 (10%)
Query: 876 RATLKGH-TRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSG 934
R TL+GH T + + + V++G+DD+ + V+D + L +L GHD V ++ G
Sbjct: 114 RTTLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG 173
Query: 935 ERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI--LAAGGRDAVANIWD 992
+++ S D TV++WD++ C +S V C++ + I + G RD ++W
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 993 IRAGRQM------HKF-----------------LGHTKWIRSIRMDRDTVITGSDDWTAR 1029
+ + H + GH +R++ + V++GS D T
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLI 293
Query: 1030 MWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTI 1089
+W +++ C +L+ H + Y + I+ S D +R W+ ++ + +
Sbjct: 294 VWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENG---ELXYTLQG 350
Query: 1090 HSSAILSINAGDHWLGIGAADNSM 1113
H++ + + D +L AAD S+
Sbjct: 351 HTALVGLLRLSDKFLVSAAADGSI 374
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 129/298 (43%), Gaps = 34/298 (11%)
Query: 853 FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKV-VSGSDDQSVLVWDKQ 911
+ I+G+ D ++++D + L+ L GH V A+ G + VSGS D++V VWD +
Sbjct: 134 YVITGADDKXIRVYDSINKKFLLQ--LSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK 191
Query: 912 TSQLLEELKGHDAQVSCVRMLSGERV---LTASHDGTVKMWDVRTDTCVATVGRCSSAVL 968
+GH++ V C+ ++ + + +T S D T+ +W + ++ V G L
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL 251
Query: 969 CMEYDDST---------------------GILAAGGRDAVANIWDIRAGRQMHKFLGHTK 1007
+ I+ +G D +WD+ + ++ GHT
Sbjct: 252 VFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTD 311
Query: 1008 WIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS 1065
I S D R I+ S D T R+W + G L H V + S D+ +++ +
Sbjct: 312 RIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLS--DKFLVSAA 369
Query: 1066 SDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERL 1123
+DG +R W+ +D + + SAI + D+ L + ++N ++++ +L
Sbjct: 370 ADGSIRGWDANDYSRKFSYHHTNL--SAITTFYVSDNIL-VSGSENQFNIYNLRSGKL 424
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 30/208 (14%)
Query: 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGK----VVSGSDDQSVL 906
G +SGSTD V++WD ++ +GH TVR ++ K +V+GS D ++
Sbjct: 173 GGILVSGSTDRTVRVWD--IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 907 VWD-----------------------KQTSQLLEELKGHDAQVSCVRMLSGERVLTASHD 943
VW ++ + L+GH A V V G V++ S+D
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSG-HGNIVVSGSYD 289
Query: 944 GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFL 1003
T+ +WDV C+ + + + YD + D IWD+ G +
Sbjct: 290 NTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQ 349
Query: 1004 GHTKWIRSIRMDRDTVITGSDDWTARMW 1031
GHT + +R+ +++ + D + R W
Sbjct: 350 GHTALVGLLRLSDKFLVSAAADGSIRGW 377
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Query: 855 ISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQ 914
IS S D ++IWD L EL TL+GHT V + +VS + D S+ WD +
Sbjct: 326 ISASXDTTIRIWD--LENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWD--AND 381
Query: 915 LLEELKGHDAQVSCVRMLS-GERVLTASHDGTVKMWDVRTDTCV-ATVGRCSSAVLCMEY 972
+ H +S + + +L + + ++++R+ V A + + + + + +
Sbjct: 382 YSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNF 441
Query: 973 DDSTGILAAGGRDA 986
T ++AA +D
Sbjct: 442 KGKT-LVAAVEKDG 454
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 119/264 (45%), Gaps = 29/264 (10%)
Query: 876 RATLKGH-TRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSG 934
R TL+GH T + + + V++G+DD+ + V+D + L +L GHD V ++ G
Sbjct: 114 RTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 173
Query: 935 ERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI--LAAGGRDAVANIWD 992
+++ S D TV++WD++ C +S V C++ + I + G RD ++W
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 993 IRAGRQM------HKF-----------------LGHTKWIRSIRMDRDTVITGSDDWTAR 1029
+ + H + GH +R++ + V++GS D T
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLI 293
Query: 1030 MWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTI 1089
+W +++ C +L+ H + Y + I+ S D +R W+ ++ + ++
Sbjct: 294 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG--- 350
Query: 1090 HSSAILSINAGDHWLGIGAADNSM 1113
H++ + + D +L AAD S+
Sbjct: 351 HTALVGLLRLSDKFLVSAAADGSI 374
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 130/299 (43%), Gaps = 34/299 (11%)
Query: 852 GFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKV-VSGSDDQSVLVWDK 910
+ I+G+ D +++++D + L+ L GH V A+ G + VSGS D++V VWD
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQ--LSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI 190
Query: 911 QTSQLLEELKGHDAQVSCVRMLSGERV---LTASHDGTVKMWDVRTDTCVATVGRCSSAV 967
+ +GH++ V C+ ++ + + +T S D T+ +W + ++ V G
Sbjct: 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP 250
Query: 968 LCMEYDDST---------------------GILAAGGRDAVANIWDIRAGRQMHKFLGHT 1006
L + I+ +G D +WD+ + ++ GHT
Sbjct: 251 LVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT 310
Query: 1007 KWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITG 1064
I S D R I+ S D T R+W + G L H V + S D+ +++
Sbjct: 311 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSA 368
Query: 1065 SSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERL 1123
++DG +R W+ +D + + SAI + D+ L + ++N ++++ +L
Sbjct: 369 AADGSIRGWDANDYSRKFSYHHTNL--SAITTFYVSDNIL-VSGSENQFNIYNLRSGKL 424
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 30/208 (14%)
Query: 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGK----VVSGSDDQSVL 906
G +SGSTD V++WD ++ +GH TVR ++ K +V+GS D ++
Sbjct: 173 GGILVSGSTDRTVRVWD--IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 907 VWD-----------------------KQTSQLLEELKGHDAQVSCVRMLSGERVLTASHD 943
VW ++ + L+GH A V V G V++ S+D
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG-HGNIVVSGSYD 289
Query: 944 GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFL 1003
T+ +WDV C+ + + + YD + D IWD+ G M+
Sbjct: 290 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 349
Query: 1004 GHTKWIRSIRMDRDTVITGSDDWTARMW 1031
GHT + +R+ +++ + D + R W
Sbjct: 350 GHTALVGLLRLSDKFLVSAAADGSIRGW 377
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Query: 855 ISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQ 914
IS S D ++IWD L EL TL+GHT V + +VS + D S+ WD +
Sbjct: 326 ISASMDTTIRIWD--LENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWD--AND 381
Query: 915 LLEELKGHDAQVSCVRMLS-GERVLTASHDGTVKMWDVRTDTCV-ATVGRCSSAVLCMEY 972
+ H +S + + +L + + ++++R+ V A + + + + + +
Sbjct: 382 YSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNF 441
Query: 973 DDSTGILAAGGRDA 986
T ++AA +D
Sbjct: 442 KGKT-LVAAVEKDG 454
>pdb|3TW8|A Chain A, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|C Chain C, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 391
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 143/331 (43%), Gaps = 57/331 (17%)
Query: 126 CICLVSRSPSFRILRNALEEIYSLCFLSDGSSKPLW-DVISHLVSNVPLPTPGKNR-VLF 183
C+C++S P F + L L+D +K L D+ L S P P N V
Sbjct: 95 CLCILSYLPWFEVYYKLLNT------LADYLAKELENDLNETLRSLYNHPVPKANTPVNL 148
Query: 184 AIENCLLSVEAPPKEGLPHADIS--FQPLVQLLDVDNLITLFTAVLLERRILLRSNKYSL 241
++ + + AP GLP S +DV+N++ L+ ++L ERRI++ S+K S
Sbjct: 149 SVHSYFI---APDVTGLPTIPESRNLTEYFVAVDVNNMLQLYASMLHERRIVIISSKLST 205
Query: 242 LTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSGV--DTSNLAMDGVV 299
LT L+YP WQH+YIP+L +DY AP PY++G+HS + N +++ VV
Sbjct: 206 LTACIHGSAALLYPMYWQHIYIPVLPPHLLDYCCAPMPYLIGIHSSLIERVKNKSLEDVV 265
Query: 300 VVDLEYNRICTTXXXXXXXXXXLSSLRGDILKLLYPNVVGIDRMNAGGSSEHYSKVCSKP 359
+++++ N + L++L D++ L + G +
Sbjct: 266 MLNVDTNTL-------ESPFSDLNNLPSDVVSALKNKLKKQSTATGDGVAR--------- 309
Query: 360 WGEEHDLQLRFIFLKFLASILGGYRNFIENTGTQ--VFNAQAFLKKRSRSTNQPPDPMIT 417
FL+ A++ G YR+ + + F ++F+K RS Q + I
Sbjct: 310 -----------AFLRAQAALFGSYRDALRYKPGEPITFCEESFVKHRSSVMKQFLETAIN 358
Query: 418 -----QFLD--------SQGFLDYLERGLGS 435
QF+D +GF D E + S
Sbjct: 359 LQLFKQFIDGRLAKLNAGRGFSDVFEEEITS 389
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 98/217 (45%), Gaps = 18/217 (8%)
Query: 875 LRATLKGHTRTVRAINSDRGK---VVSGSDDQSVLVW-----DKQTSQLLEELKGHDAQV 926
LR TL+GH V ++ + G+ ++S S D++++ W D++ + KGH V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 927 S-CVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD 985
C G L+AS D T+++WDV T S V+ ++ D ++ +G RD
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 986 AVANIWDIRAGRQMHKFLGHTKWIRSIRM--------DRDTVITGSDDWTARMWSISRGT 1037
+W I+ G+ + LGH W+ +R+ D T+I+ +D + W++++
Sbjct: 129 KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 1038 CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074
+A H + + S I + DG + W
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 14/163 (8%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDR--GKVVSGSDDQSVLV 907
D + +S S D +++WD + E GH V +++ D+ ++SGS D+++ V
Sbjct: 76 DGAYALSASWDKTLRLWD--VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 908 WDKQTSQLLEELKGHDAQVSCVRMLSGER-------VLTASHDGTVKMWDVRTDTCVAT- 959
W + Q L L GH+ VS VR++ E+ +++A +D VK W++ A
Sbjct: 134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 960 VGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKF 1002
+G S+ D T ++A+ G+D +W++ A + M+
Sbjct: 193 IGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKKAMYTL 234
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 98/217 (45%), Gaps = 18/217 (8%)
Query: 875 LRATLKGHTRTVRAINSDRGK---VVSGSDDQSVLVW-----DKQTSQLLEELKGHDAQV 926
LR TL+GH V ++ + G+ ++S S D++++ W D++ + KGH V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 927 S-CVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD 985
C G L+AS D T+++WDV T S V+ ++ D ++ +G RD
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 986 AVANIWDIRAGRQMHKFLGHTKWIRSIRM--------DRDTVITGSDDWTARMWSISRGT 1037
+W I+ G+ + LGH W+ +R+ D T+I+ +D + W++++
Sbjct: 129 KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 1038 CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074
+A H + + S I + DG + W
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 14/163 (8%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDR--GKVVSGSDDQSVLV 907
D + +S S D +++WD + E GH V +++ D+ ++SGS D+++ V
Sbjct: 76 DGAYALSASWDKTLRLWD--VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 908 WDKQTSQLLEELKGHDAQVSCVRMLSGER-------VLTASHDGTVKMWDVRTDTCVAT- 959
W + Q L L GH+ VS VR++ E+ +++A +D VK W++ A
Sbjct: 134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 960 VGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKF 1002
+G S+ D T ++A+ G+D +W++ A + M+
Sbjct: 193 IGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKKAMYTL 234
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 98/217 (45%), Gaps = 18/217 (8%)
Query: 875 LRATLKGHTRTVRAINSDRGK---VVSGSDDQSVLVW-----DKQTSQLLEELKGHDAQV 926
LR TL+GH V ++ + G+ ++S S D++++ W D++ + KGH V
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 927 S-CVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD 985
C G L+AS D T+++WDV T S V+ ++ D ++ +G RD
Sbjct: 63 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 122
Query: 986 AVANIWDIRAGRQMHKFLGHTKWIRSIRM--------DRDTVITGSDDWTARMWSISRGT 1037
+W I+ G+ + LGH W+ +R+ D T+I+ +D + W++++
Sbjct: 123 KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 181
Query: 1038 CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074
+A H + + S I + DG + W
Sbjct: 182 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 14/163 (8%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDR--GKVVSGSDDQSVLV 907
D + +S S D +++WD + E GH V +++ D+ ++SGS D+++ V
Sbjct: 70 DGAYALSASWDKTLRLWD--VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 127
Query: 908 WDKQTSQLLEELKGHDAQVSCVRMLSGER-------VLTASHDGTVKMWDVRTDTCVAT- 959
W + Q L L GH+ VS VR++ E+ +++A +D VK W++ A
Sbjct: 128 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 186
Query: 960 VGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKF 1002
+G S+ D T ++A+ G+D +W++ A + M+
Sbjct: 187 IGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKKAMYTL 228
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 79.7 bits (195), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 98/217 (45%), Gaps = 18/217 (8%)
Query: 875 LRATLKGHTRTVRAINSDRGK---VVSGSDDQSVLVW-----DKQTSQLLEELKGHDAQV 926
LR TL+GH V ++ + G+ ++S S D++++ W D++ + KGH V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 927 S-CVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD 985
C G L+AS D T+++WDV T S V+ ++ D ++ +G RD
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 986 AVANIWDIRAGRQMHKFLGHTKWIRSIRM--------DRDTVITGSDDWTARMWSISRGT 1037
+W I+ G+ + LGH W+ +R+ D T+I+ +D + W++++
Sbjct: 129 KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 1038 CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074
+A H + + S I + DG + W
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 14/163 (8%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDR--GKVVSGSDDQSVLV 907
D + +S S D +++WD + E GH V +++ D+ ++SGS D+++ V
Sbjct: 76 DGAYALSASWDKTLRLWD--VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 908 WDKQTSQLLEELKGHDAQVSCVRMLSGER-------VLTASHDGTVKMWDVRTDTCVAT- 959
W + Q L L GH+ VS VR++ E+ +++A +D VK W++ A
Sbjct: 134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 960 VGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKF 1002
+G S+ D T ++A+ G+D +W++ A + M+
Sbjct: 193 IGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKKAMYTL 234
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A
6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating
80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 79.7 bits (195), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 98/217 (45%), Gaps = 18/217 (8%)
Query: 875 LRATLKGHTRTVRAINSDRGK---VVSGSDDQSVLVW-----DKQTSQLLEELKGHDAQV 926
LR TL+GH V ++ + G+ ++S S D++++ W D++ + KGH V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 927 S-CVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD 985
C G L+AS D T+++WDV T S V+ ++ D ++ +G RD
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 986 AVANIWDIRAGRQMHKFLGHTKWIRSIRM--------DRDTVITGSDDWTARMWSISRGT 1037
+W I+ G+ + LGH W+ +R+ D T+I+ +D + W++++
Sbjct: 129 KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Query: 1038 CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074
+A H + + S I + DG + W
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 14/163 (8%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDR--GKVVSGSDDQSVLV 907
D + +S S D +++WD + E GH V +++ D+ ++SGS D+++ V
Sbjct: 76 DGAYALSASWDKTLRLWD--VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 908 WDKQTSQLLEELKGHDAQVSCVRMLSGER-------VLTASHDGTVKMWDVRTDTCVAT- 959
W + Q L L GH+ VS VR++ E+ +++A +D VK W++ A
Sbjct: 134 WTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 960 VGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKF 1002
+G S+ D T ++A+ G+D +W++ A + M+
Sbjct: 193 IGHNSNINTLTASPDGT-LIASAGKDGEIMLWNLAAKKAMYTL 234
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 96/217 (44%), Gaps = 18/217 (8%)
Query: 875 LRATLKGHTRTVRAINSDRGK---VVSGSDDQSVLVW-----DKQTSQLLEELKGHDAQV 926
LR TL+GH V ++ + G+ ++S S D++++ W D++ + KGH V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 927 S-CVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD 985
C G L+AS D T+++WDV T S V ++ D + +G RD
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRD 128
Query: 986 AVANIWDIRAGRQMHKFLGHTKWIRSIRM--------DRDTVITGSDDWTARMWSISRGT 1037
+W I+ G+ + LGH W+ +R+ D T+I+ +D + W++++
Sbjct: 129 KTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQ 187
Query: 1038 CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074
+A H + + S I + DG + W
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 12/112 (10%)
Query: 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--------NSDRGKVVSGS 900
+ A ISGS D +K+W +++G L ATL GH V + + D ++S
Sbjct: 117 KKASXIISGSRDKTIKVW--TIKGQCL-ATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173
Query: 901 DDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDV 951
+D+ V W+ Q+ + GH++ ++ + G + +A DG + +W++
Sbjct: 174 NDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNL 225
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 107/263 (40%), Gaps = 22/263 (8%)
Query: 821 RIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLK 880
R +RGH I A+H T D+ +S S D + IWD L+
Sbjct: 60 RTLRGHLAKIYAMHWGT------------DSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 107
Query: 881 GHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQ----LLEELKGHDAQVSCVRMLSGER 936
A V G D +++ +T + + EL GH +SC R L +
Sbjct: 108 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 167
Query: 937 VLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG 996
++T+S D T +WD+ T T + V+ + T + +G DA A +WD+R G
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 227
Query: 997 RQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHAG---PVQC 1051
F GH I +I + + TGSDD T R++ + R + + H +
Sbjct: 228 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITS 286
Query: 1052 VEYSSSDRGIITGSSDGLLRFWE 1074
V +S S R ++ G D W+
Sbjct: 287 VSFSKSGRLLLAGYDDFNCNVWD 309
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 9/149 (6%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAIN--SDRGKVVSGSDDQSVLV 907
D F+SG+ D K+WD +R R T GH + AI + +GSDD + +
Sbjct: 206 DTRLFVSGACDASAKLWD--VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 263
Query: 908 WDKQTSQLLEELKGHDAQVSCVRMLS----GERVLTASHDGTVKMWDVRTDTCVATVGRC 963
+D + Q L HD + + +S G +L D +WD +
Sbjct: 264 FDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 322
Query: 964 SSAVLCMEYDDSTGILAAGGRDAVANIWD 992
+ V C+ D +A G D+ IW+
Sbjct: 323 DNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In
Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 107/263 (40%), Gaps = 22/263 (8%)
Query: 821 RIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLK 880
R +RGH I A+H T D+ +S S D + IWD L+
Sbjct: 49 RTLRGHLAKIYAMHWGT------------DSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 96
Query: 881 GHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQ----LLEELKGHDAQVSCVRMLSGER 936
A V G D +++ +T + + EL GH +SC R L +
Sbjct: 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 156
Query: 937 VLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG 996
++T+S D T +WD+ T T + V+ + T + +G DA A +WD+R G
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 997 RQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHAG---PVQC 1051
F GH I +I + + TGSDD T R++ + R + + H +
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITS 275
Query: 1052 VEYSSSDRGIITGSSDGLLRFWE 1074
V +S S R ++ G D W+
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWD 298
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 9/149 (6%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAIN--SDRGKVVSGSDDQSVLV 907
D F+SG+ D K+WD +R R T GH + AI + +GSDD + +
Sbjct: 195 DTRLFVSGACDASAKLWD--VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252
Query: 908 WDKQTSQLLEELKGHDAQVSCVRMLS----GERVLTASHDGTVKMWDVRTDTCVATVGRC 963
+D + Q L HD + + +S G +L D +WD +
Sbjct: 253 FDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
Query: 964 SSAVLCMEYDDSTGILAAGGRDAVANIWD 992
+ V C+ D +A G D+ IW+
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 16/206 (7%)
Query: 881 GHTRTVRAIN--SDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVL 938
GH + VR I +D ++S S+D + VW+ QT + L+ H V R+L R+L
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDSRLL 1059
Query: 939 TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ 998
+ S DGTVK+W+V T VL ++ D A IW
Sbjct: 1060 SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP 1119
Query: 999 MHKFLGHTKWIRSIRMDRDTVI--TGSDDWTARMWSISRG----TCDAV-----LACHAG 1047
+H+ GH +R D ++ TG D+ R+W++S G +C + A H G
Sbjct: 1120 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGG 1179
Query: 1048 PVQCVEYSSSDRGIITGSSDGLLRFW 1073
V V +S + ++ S+ G L++W
Sbjct: 1180 WVTDVCFSPDSKTLV--SAGGYLKWW 1203
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 105/248 (42%), Gaps = 36/248 (14%)
Query: 876 RATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS 933
R ++ HT V + D ++ S D+++ V+ +T + L ++K H+ +V C S
Sbjct: 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS 667
Query: 934 GER-VLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTG--ILAAGGRDAVANI 990
+ + T S D VK+WD T V T S V C + + + +LA G D +
Sbjct: 668 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727
Query: 991 WDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSI----SRGTCDA---V 1041
WD+ + GHT + R D + + + S D T R+W + R + +
Sbjct: 728 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787
Query: 1042 LACHAGP------VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAIL 1095
L+ P V+C +S+ II + + +L F IH+S +L
Sbjct: 788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF---------------DIHTSGLL 832
Query: 1096 S-INAGDH 1102
+ I+ G H
Sbjct: 833 AEIHTGHH 840
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 24/203 (11%)
Query: 853 FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDK 910
+GS D +K+WD L E R T+ GHT +V + D + S S D ++ +WD
Sbjct: 715 LLATGSNDFFLKLWD--LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Query: 911 QTSQ-----------LLEELKGHDAQV---SCVRMLSGERVLTASHDGTVKMWDVRTDTC 956
+++ L E D +V C G++++ A+ + V ++D+ T
Sbjct: 773 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN-KVLLFDIHTSGL 831
Query: 957 VATV--GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM 1014
+A + G S+ C ++ + +W+I + ++ GH W+ +
Sbjct: 832 LAEIHTGHHSTIQYC-DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMF 890
Query: 1015 DRD--TVITGSDDWTARMWSISR 1035
D + +T SDD T R+W +
Sbjct: 891 SPDGSSFLTASDDQTIRVWETKK 913
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 104/239 (43%), Gaps = 28/239 (11%)
Query: 850 DAGFFISGSTDCLVKIWDPS--------LRGSELRATLKGHTRTVRAINSDRG-KVVSGS 900
D F++ S D +++W+ + E+ + + V A+++ RG ++++G
Sbjct: 893 DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGK 952
Query: 901 DDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSG-ERVLTASHDGTVKMWDVRTDTCVAT 959
Q ++ L +AQVSC + E V DG +K+ ++ + ++
Sbjct: 953 TGQ------------IDYLP--EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS 998
Query: 960 VGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFL-GHTKWIRSIRMDRDT 1018
AV +++ L + D+V +W+ + G + FL H + ++ R+ +D+
Sbjct: 999 GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV--FLQAHQETVKDFRLLQDS 1056
Query: 1019 -VITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEND 1076
+++ S D T ++W++ G + CH G V SS + S+D + W D
Sbjct: 1057 RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1115
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 75/336 (22%), Positives = 137/336 (40%), Gaps = 64/336 (19%)
Query: 863 VKIW--DPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWD-----KQTS 913
V++W D L+ ++ R GH V + + D ++ SDDQ++ VW+ K ++
Sbjct: 864 VELWNIDSRLKVADCR----GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSA 919
Query: 914 QLLEE-----LKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVL 968
+L++ + ++ V V + G +++ + + + C C S L
Sbjct: 920 IVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCC------CLSPHL 973
Query: 969 CMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDW 1026
EY +A G D I ++ R +GH K +R I+ D T+I+ S+D
Sbjct: 974 --EY------VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDS 1025
Query: 1027 TARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKN 1086
++W+ G L H V+ R +++ S DG ++ W N G I+ ++
Sbjct: 1026 VIQVWNWQTGDY-VFLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVW-NVITGRIE--RD 1080
Query: 1087 VTIHSSAILS--INAGDHWLGIGAADNSMSLFH----RPQERLGGFSGTGSKMSGWQLYR 1140
T H +LS I++ +AD + ++ P L G +G
Sbjct: 1081 FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG------------ 1128
Query: 1141 TPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176
VRC A L+ + +G NG +R+W +
Sbjct: 1129 -------CVRCSAFSLDGILLATGDDNGEIRIWNVS 1157
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And
Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma In
Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 107/263 (40%), Gaps = 22/263 (8%)
Query: 821 RIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLK 880
R +RGH I A+H T D+ +S S D + IWD L+
Sbjct: 49 RTLRGHLAKIYAMHWGT------------DSRLLVSASQDGKLIIWDSYTTNKVHAIPLR 96
Query: 881 GHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQ----LLEELKGHDAQVSCVRMLSGER 936
A V G D +++ +T + + EL GH +SC R L +
Sbjct: 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 156
Query: 937 VLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG 996
++T+S D T +WD+ T T + V+ + T + +G DA A +WD+R G
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 997 RQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHAG---PVQC 1051
F GH I +I + + TGSDD T R++ + R + + H +
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITS 275
Query: 1052 VEYSSSDRGIITGSSDGLLRFWE 1074
V +S S R ++ G D W+
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWD 298
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 9/149 (6%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAIN--SDRGKVVSGSDDQSVLV 907
D F+SG+ D K+WD +R R T GH + AI + +GSDD + +
Sbjct: 195 DTRLFVSGACDASAKLWD--VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252
Query: 908 WDKQTSQLLEELKGHDAQVSCVRMLS----GERVLTASHDGTVKMWDVRTDTCVATVGRC 963
+D + Q L HD + + +S G +L D +WD +
Sbjct: 253 FDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
Query: 964 SSAVLCMEYDDSTGILAAGGRDAVANIWD 992
+ V C+ D +A G D+ IW+
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 16/206 (7%)
Query: 881 GHTRTVRAIN--SDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVL 938
GH + VR I +D ++S S+D + VW+ QT + L+ H V R+L R+L
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDSRLL 1066
Query: 939 TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ 998
+ S DGTVK+W+V T VL ++ D A IW
Sbjct: 1067 SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP 1126
Query: 999 MHKFLGHTKWIRSIRMDRDTVI--TGSDDWTARMWSISRG----TCDAV-----LACHAG 1047
+H+ GH +R D ++ TG D+ R+W++S G +C + A H G
Sbjct: 1127 LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGG 1186
Query: 1048 PVQCVEYSSSDRGIITGSSDGLLRFW 1073
V V +S + ++ S+ G L++W
Sbjct: 1187 WVTDVCFSPDSKTLV--SAGGYLKWW 1210
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 105/248 (42%), Gaps = 36/248 (14%)
Query: 876 RATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS 933
R ++ HT V + D ++ S D+++ V+ +T + L ++K H+ +V C S
Sbjct: 615 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS 674
Query: 934 GER-VLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTG--ILAAGGRDAVANI 990
+ + T S D VK+WD T V T S V C + + + +LA G D +
Sbjct: 675 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 734
Query: 991 WDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSI----SRGTCDA---V 1041
WD+ + GHT + R D + + + S D T R+W + R + +
Sbjct: 735 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 794
Query: 1042 LACHAGP------VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAIL 1095
L+ P V+C +S+ II + + +L F IH+S +L
Sbjct: 795 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF---------------DIHTSGLL 839
Query: 1096 S-INAGDH 1102
+ I+ G H
Sbjct: 840 AEIHTGHH 847
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 24/203 (11%)
Query: 853 FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDK 910
+GS D +K+WD L E R T+ GHT +V + D + S S D ++ +WD
Sbjct: 722 LLATGSNDFFLKLWD--LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Query: 911 QTSQ-----------LLEELKGHDAQV---SCVRMLSGERVLTASHDGTVKMWDVRTDTC 956
+++ L E D +V C G++++ A+ + V ++D+ T
Sbjct: 780 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN-KVLLFDIHTSGL 838
Query: 957 VATV--GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM 1014
+A + G S+ C ++ + +W+I + ++ GH W+ +
Sbjct: 839 LAEIHTGHHSTIQYC-DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMF 897
Query: 1015 DRD--TVITGSDDWTARMWSISR 1035
D + +T SDD T R+W +
Sbjct: 898 SPDGSSFLTASDDQTIRVWETKK 920
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 104/239 (43%), Gaps = 28/239 (11%)
Query: 850 DAGFFISGSTDCLVKIWDPS--------LRGSELRATLKGHTRTVRAINSDRG-KVVSGS 900
D F++ S D +++W+ + E+ + + V A+++ RG ++++G
Sbjct: 900 DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGK 959
Query: 901 DDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSG-ERVLTASHDGTVKMWDVRTDTCVAT 959
Q ++ L +AQVSC + E V DG +K+ ++ + ++
Sbjct: 960 TGQ------------IDYLP--EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS 1005
Query: 960 VGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFL-GHTKWIRSIRMDRDT 1018
AV +++ L + D+V +W+ + G + FL H + ++ R+ +D+
Sbjct: 1006 GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV--FLQAHQETVKDFRLLQDS 1063
Query: 1019 -VITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEND 1076
+++ S D T ++W++ G + CH G V SS + S+D + W D
Sbjct: 1064 RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD 1122
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 75/336 (22%), Positives = 137/336 (40%), Gaps = 64/336 (19%)
Query: 863 VKIW--DPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWD-----KQTS 913
V++W D L+ ++ R GH V + + D ++ SDDQ++ VW+ K ++
Sbjct: 871 VELWNIDSRLKVADCR----GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSA 926
Query: 914 QLLEE-----LKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVL 968
+L++ + ++ V V + G +++ + + + C C S L
Sbjct: 927 IVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCC------CLSPHL 980
Query: 969 CMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDW 1026
EY +A G D I ++ R +GH K +R I+ D T+I+ S+D
Sbjct: 981 --EY------VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDS 1032
Query: 1027 TARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKN 1086
++W+ G L H V+ R +++ S DG ++ W N G I+ ++
Sbjct: 1033 VIQVWNWQTGDY-VFLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVW-NVITGRIE--RD 1087
Query: 1087 VTIHSSAILS--INAGDHWLGIGAADNSMSLFH----RPQERLGGFSGTGSKMSGWQLYR 1140
T H +LS I++ +AD + ++ P L G +G
Sbjct: 1088 FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNG------------ 1135
Query: 1141 TPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176
VRC A L+ + +G NG +R+W +
Sbjct: 1136 -------CVRCSAFSLDGILLATGDDNGEIRIWNVS 1164
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 107/263 (40%), Gaps = 22/263 (8%)
Query: 821 RIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLK 880
R +RGH I A+H T D+ +S S D + IWD L+
Sbjct: 49 RTLRGHLAKIYAMHWGT------------DSRLLLSASQDGKLIIWDSYTTNKVHAIPLR 96
Query: 881 GHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQ----LLEELKGHDAQVSCVRMLSGER 936
A V G D +++ +T + + EL GH +SC R L +
Sbjct: 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 156
Query: 937 VLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG 996
++T+S D T +WD+ T T + V+ + T + +G DA A +WD+R G
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 997 RQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHAG---PVQC 1051
F GH I +I + + TGSDD T R++ + R + + H +
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITS 275
Query: 1052 VEYSSSDRGIITGSSDGLLRFWE 1074
V +S S R ++ G D W+
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWD 298
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 9/149 (6%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAIN--SDRGKVVSGSDDQSVLV 907
D F+SG+ D K+WD +R R T GH + AI + +GSDD + +
Sbjct: 195 DTRLFVSGACDASAKLWD--VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252
Query: 908 WDKQTSQLLEELKGHDAQVSCVRMLS----GERVLTASHDGTVKMWDVRTDTCVATVGRC 963
+D + Q L HD + + +S G +L D +WD +
Sbjct: 253 FDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
Query: 964 SSAVLCMEYDDSTGILAAGGRDAVANIWD 992
+ V C+ D +A G D+ IW+
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 124/272 (45%), Gaps = 28/272 (10%)
Query: 823 IRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIW--DPSLRGSELR---- 876
+ GH G +T+L C E A +S S D + W +P SE
Sbjct: 9 LTGHRGWVTSLACPQTPET---------ATKVVSTSRDKTLLSWGPNPDRHSSECSYGLP 59
Query: 877 -ATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS 933
L+GH+ V A++++ VS S D S+ +W+ Q Q + GH V V
Sbjct: 60 DRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSP 119
Query: 934 GER-VLTASHDGTVKMWDVRTDTCVATVGRCSSA--VLCMEYDDS--TGILAAGGRDAVA 988
R +++ D +++W+V+ + C+ T+ R + V C+ + S ++ +GG D +
Sbjct: 120 DNRQIVSGGRDNALRVWNVKGE-CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLV 178
Query: 989 NIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSD--DWTARMWSISRGTCDAVLACHA 1046
+WD+ GR + GHT ++ S+ + D + S D AR+W +++G + +A A
Sbjct: 179 KVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGA 238
Query: 1047 GPVQCVEYSSSDRGIITGSSDGLLRF-WENDD 1077
P+ + +S + + + G+ F EN D
Sbjct: 239 -PINQICFSPNRYWMCAATEKGIRIFDLENKD 269
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The
Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 107/263 (40%), Gaps = 22/263 (8%)
Query: 821 RIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLK 880
R +RGH I A+H T D+ +S S D + IWD L+
Sbjct: 49 RTLRGHLAKIYAMHWGT------------DSRLLLSASQDGKLIIWDSYTTNKVHAIPLR 96
Query: 881 GHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQ----LLEELKGHDAQVSCVRMLSGER 936
A V G D +++ +T + + EL GH +SC R L +
Sbjct: 97 SSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ 156
Query: 937 VLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG 996
++T+S D T +WD+ T T + V+ + T + +G DA A +WD+R G
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 997 RQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHAG---PVQC 1051
F GH I +I + + TGSDD T R++ + R + + H +
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITS 275
Query: 1052 VEYSSSDRGIITGSSDGLLRFWE 1074
V +S S R ++ G D W+
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWD 298
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 60/149 (40%), Gaps = 9/149 (6%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAIN--SDRGKVVSGSDDQSVLV 907
D F+SG+ D K+WD +R R T GH + AI + +GSDD + +
Sbjct: 195 DTRLFVSGACDASAKLWD--VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRL 252
Query: 908 WDKQTSQLLEELKGHDAQVSCVRMLS----GERVLTASHDGTVKMWDVRTDTCVATVGRC 963
+D + Q L HD + + +S G +L D +WD +
Sbjct: 253 FDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH 311
Query: 964 SSAVLCMEYDDSTGILAAGGRDAVANIWD 992
+ V C+ D +A G D+ IW+
Sbjct: 312 DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 73.2 bits (178), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 11/208 (5%)
Query: 876 RATLKGHTRTVRAI---NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML 932
+ ++ HT + A NSD ++++ S D + +WD ++ QLL+ GH A V C+ +
Sbjct: 147 KKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLA 205
Query: 933 ---SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVAN 989
+G ++ D +WD+R+ CV S V + Y S A+G DA
Sbjct: 206 PSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCR 265
Query: 990 IWDIRAGRQMHKFLGHTKWIRSIRMDRD----TVITGSDDWTARMWSISRGTCDAVLACH 1045
++D+RA R++ + + + +D + G +D+T +W + +G+ ++L H
Sbjct: 266 LYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH 325
Query: 1046 AGPVQCVEYSSSDRGIITGSSDGLLRFW 1073
V + S +GS D LR W
Sbjct: 326 ENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 86/218 (39%), Gaps = 25/218 (11%)
Query: 876 RATLKGHTRTVRAIN--SDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML- 932
R TLKGH V ++ D+ ++VS S D V+VWD T+ K H + C ++
Sbjct: 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN-----KEHAVTMPCTWVMA 111
Query: 933 -----SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEY-------DDSTGILA 980
SG + D ++ + D + S + Y + IL
Sbjct: 112 CAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILT 171
Query: 981 AGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM----DRDTVITGSDDWTARMWSISRG 1036
A G D +WD+ +G+ + F GH + + + +T ++G D A +W + G
Sbjct: 172 ASG-DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG 230
Query: 1037 TCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074
C H V V Y S +GS D R ++
Sbjct: 231 QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD 268
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 15/204 (7%)
Query: 882 HTRTVRAIN--SDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLT 939
H +TV I +D ++S SDD + VW+ Q + + L+GH V R+L R+L+
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRLLKNSRLLS 1066
Query: 940 ASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM 999
S DGTVK+W++ T VL + ++ D A IW +
Sbjct: 1067 WSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPL 1126
Query: 1000 HKFLGHTKWIR--SIRMDRDTVITGSDDWTARMWSISRGT----CDAV----LACHAGPV 1049
H+ GH +R + +D + TG D+ R+W++S G C + A H G V
Sbjct: 1127 HELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWV 1186
Query: 1050 QCVEYSSSDRGIITGSSDGLLRFW 1073
+ +S + +I S+ G +++W
Sbjct: 1187 TDLCFSPDGKMLI--SAGGYIKWW 1208
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 7/163 (4%)
Query: 876 RATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS 933
R ++ HT V + D ++ S D+++ V+ +T + L E+K H+ +V C +
Sbjct: 614 RLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFST 673
Query: 934 GERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTG--ILAAGGRDAVANI 990
+R + T S D VK+W+ T V T S V C + +S+ +LA G D +
Sbjct: 674 DDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKL 733
Query: 991 WDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMW 1031
WD+ + GHT + R D + + S D T ++W
Sbjct: 734 WDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 89/231 (38%), Gaps = 15/231 (6%)
Query: 934 GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDI 993
G+R+ + D T++++ T + + VLC + +A D IW+
Sbjct: 633 GQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNS 692
Query: 994 RAGRQMHKFLGHTKWIRSIRMDRDT----VITGSDDWTARMWSISRGTCDAVLACHAGPV 1049
G +H + H++ + + + TGS D ++W +++ C + H V
Sbjct: 693 MTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSV 752
Query: 1050 QCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVK------NVTIHSSAILSINAGDHW 1103
+S D+ + + S+DG L+ W+ A K + N+ + I W
Sbjct: 753 NHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSW 812
Query: 1104 LGIG-----AADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVV 1149
G AA N + LF L G TG + +PQ +AVV
Sbjct: 813 SADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVV 863
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 24/200 (12%)
Query: 856 SGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTS 913
+GS+DC +K+WD L E R T+ GHT +V + D + S S D ++ +WD ++
Sbjct: 724 TGSSDCFLKLWD--LNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSA 781
Query: 914 ---------QLLEELKG--HDAQV---SCVRMLSGERVLTASHDGTVKMWDVRTDTCVAT 959
Q L+ D +V C G R++ A+ + + ++D+ T +
Sbjct: 782 NERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKN-KIFLFDIHTSGLLGE 840
Query: 960 V--GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD 1017
+ G S+ C ++ + +W+ + ++ GH W+ + D
Sbjct: 841 IHTGHHSTIQYC-DFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPD 899
Query: 1018 --TVITGSDDWTARMWSISR 1035
+ +T SDD T R+W +
Sbjct: 900 GSSFLTSSDDQTIRLWETKK 919
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 879 LKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGER 936
+K H V A ++D + + S D+ V +W+ T +L+ H QV+C +
Sbjct: 659 IKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSH 718
Query: 937 VL---TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDI 993
L T S D +K+WD+ C T+ +++V + +LA+ D +WD
Sbjct: 719 HLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDA 778
Query: 994 RAGRQ 998
+ +
Sbjct: 779 TSANE 783
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/330 (21%), Positives = 127/330 (38%), Gaps = 52/330 (15%)
Query: 863 VKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWD-----KQTSQL 915
V++W+ R A +GH V + + D ++ SDDQ++ +W+ K ++ +
Sbjct: 870 VELWNTDSRSK--VADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVM 927
Query: 916 LEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA-VLCMEYDD 974
L++ +V V + VL H +++ + RT + + A V C
Sbjct: 928 LKQ------EVDVVFQENEVMVLAVDHIRRLQLINGRT----GQIDYLTEAQVSCCCLSP 977
Query: 975 STGILAAGGRDAVANIWDIRAGRQMHKFLGHTK--WIRSIRMDRDTVITGSDDWTARMWS 1032
+A G + I ++ R H K W D T+I+ SDD ++W+
Sbjct: 978 HLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWN 1037
Query: 1033 ISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSS 1092
C L H V+ + R +++ S DG ++ W N G + K+ H
Sbjct: 1038 WQLDKC-IFLRGHQETVKDFRLLKNSR-LLSWSFDGTVKVW-NIITGNKE--KDFVCHQG 1092
Query: 1093 AILS--INAGDHWLGIGAADNSMSLFH----RPQERLGGFSGTGSKMSGWQLYRTPQKTV 1146
+LS I+ +AD + ++ P L G +G
Sbjct: 1093 TVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNG------------------ 1134
Query: 1147 AVVRCIASDLERKRICSGGRNGLLRLWEAT 1176
VRC A ++ + +G NG +R+W +
Sbjct: 1135 -CVRCSAFSVDSTLLATGDDNGEIRIWNVS 1163
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 16/153 (10%)
Query: 1025 DWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCV 1084
D T +++ G + H V C +S+ DR I T S D ++ W + +
Sbjct: 642 DKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTY 701
Query: 1085 KNVTIHSSAILSINAGDH-WLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQ 1143
+ + N+ H L G++D + L+ Q+ + M G
Sbjct: 702 DEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKE------CRNTMFG-------- 747
Query: 1144 KTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176
T +V C S + K + S +G L+LW+AT
Sbjct: 748 HTNSVNHCRFSP-DDKLLASCSADGTLKLWDAT 779
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 111/257 (43%), Gaps = 34/257 (13%)
Query: 872 GSELRATLKGHTRTVRAI-----NSDRGKVVSGSDDQSVLVW-----DKQTSQLLEELKG 921
G L+ T++ HT V AI N+D +VS S D+S+++W DK L G
Sbjct: 371 GLVLKGTMRAHTDMVTAIATPIDNADI--IVSASRDKSIILWKLTKDDKAYGVAQRRLTG 428
Query: 922 HDAQVSCVRMLS-GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILA 980
H V V + S G+ L+ S DG +++WD+ + VL + + +
Sbjct: 429 HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIV 488
Query: 981 AGGRDAVANIWD--------IRAGRQMHKFLGHTKWIRSIRMD----RDTVITGSDDWTA 1028
+ RD +W+ I G + GH W+ +R + T+++ S D T
Sbjct: 489 SASRDRTIKLWNTLGECKYTISEGGE-----GHRDWVSCVRFSPNTLQPTIVSASWDKTV 543
Query: 1029 RMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVK-NV 1087
++W++S + LA H G V V S +G DG++ W+ + + ++ N
Sbjct: 544 KVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS 603
Query: 1088 TIHSSAILSINAGDHWL 1104
IH+ L + +WL
Sbjct: 604 VIHA---LCFSPNRYWL 617
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 119/252 (47%), Gaps = 31/252 (12%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLV 907
D F +SGS D +++WD + S R GHT+ V A + D ++VS S D+++ +
Sbjct: 441 DGQFALSGSWDGELRLWDLAAGVSTRR--FVGHTKDVLSVAFSLDNRQIVSASRDRTIKL 498
Query: 908 WD---KQTSQLLEELKGHDAQVSCVRMLSGE---RVLTASHDGTVKMWDVRTDTCVATVG 961
W+ + + E +GH VSCVR +++AS D TVK+W++ +T+
Sbjct: 499 WNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA 558
Query: 962 RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTV-I 1020
+ V + + A+GG+D V +WD+ G++++ ++ I ++ + +
Sbjct: 559 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV-IHALCFSPNRYWL 617
Query: 1021 TGSDDWTARMWSISRGT----------CDAVLACHAGP-------VQC--VEYSSSDRGI 1061
+ + ++W + + +A A ++GP + C + +S+ +
Sbjct: 618 CAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTL 677
Query: 1062 ITGSSDGLLRFW 1073
+G +DG++R W
Sbjct: 678 FSGYTDGVIRVW 689
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 113/255 (44%), Gaps = 8/255 (3%)
Query: 848 REDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSD--DQSV 905
+E++ ++GS D LVK+W +L+ +L+GH V +++ ++ S D +
Sbjct: 45 KENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104
Query: 906 LVWDKQTSQLLEELKGHDAQVSCVRMLSGERVL-TASHDGTVKMWDVRTDTCVATVGRCS 964
+WD + + ++ + + + L T +H G V ++ V + ++
Sbjct: 105 RLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRG 164
Query: 965 SAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDT--VITG 1022
+L + Y LA+G D + NI+DI G+ +H GH IRS+ D+ ++T
Sbjct: 165 KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTA 224
Query: 1023 SDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIK 1082
SDD +++ + L+ HA V V + D ++ SSD ++ W D G
Sbjct: 225 SDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVW---DVGTRT 281
Query: 1083 CVKNVTIHSSAILSI 1097
CV H + +
Sbjct: 282 CVHTFFDHQDQVWGV 296
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 5/146 (3%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLV 907
D + SG+ D ++ I+D + +L TL+GH +R++ + D +V+ SDD + +
Sbjct: 175 DGKYLASGAIDGIINIFD--IATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 232
Query: 908 WDKQTSQLLEELKGHDAQVSCVRMLSGE-RVLTASHDGTVKMWDVRTDTCVATVGRCSSA 966
+D Q + L L GH + V V + +++S D +VK+WDV T TCV T
Sbjct: 233 YDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQ 292
Query: 967 VLCMEYDDSTGILAAGGRDAVANIWD 992
V ++Y+ + + + G D +I+D
Sbjct: 293 VWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 1/167 (0%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWD 909
D+ + +G+ V I+ E +G A + D + SG+ D + ++D
Sbjct: 133 DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD 192
Query: 910 KQTSQLLEELKGHDAQVSCVRMLSGERVL-TASHDGTVKMWDVRTDTCVATVGRCSSAVL 968
T +LL L+GH + + ++L TAS DG +K++DV+ T+ +S VL
Sbjct: 193 IATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVL 252
Query: 969 CMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD 1015
+ + + D +WD+ +H F H + ++ +
Sbjct: 253 NVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN 299
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 40/244 (16%)
Query: 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATL 879
+ I++GH I +L GD+ +SGS D V+IWD L ++
Sbjct: 158 VMILQGHEQDIYSLDYFPS-------GDK-----LVSGSGDRTVRIWDLRTGQCSLTLSI 205
Query: 880 KGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELK-------GH-DAQVSCVRM 931
+ TV D + +GS D++V VWD +T L+E L GH D+ S V
Sbjct: 206 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 265
Query: 932 LSGERVLTASHDGTVKMWDV-----RTDTCVATVGRCSSA-------VLCMEYDDSTGIL 979
G+ V++ S D +VK+W++ ++D+ G C VL + + +
Sbjct: 266 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI 325
Query: 980 AAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--------DRDTVITGSDDWTARMW 1031
+G +D WD ++G + GH + S+ + + + TGS D AR+W
Sbjct: 326 LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Query: 1032 SISR 1035
+
Sbjct: 386 KYKK 389
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 113/263 (42%), Gaps = 53/263 (20%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAIN--SDRGKVVSGSDDQSVLV 907
D F +G+ D L++IWD + ++ L+GH + + +++ K+VSGS D++V +
Sbjct: 134 DGKFLATGAEDRLIRIWD--IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 191
Query: 908 WDKQTSQLLEELKGHDAQVS-CVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA 966
WD +T Q L D + V G+ + S D V++WD T
Sbjct: 192 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG------------ 239
Query: 967 VLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDW 1026
+E DS G +D+V ++ R G+ +V++GS D
Sbjct: 240 -FLVERLDSENESGTGHKDSVYSVVFTRDGQ--------------------SVVSGSLDR 278
Query: 1027 TARMWSI------------SRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074
+ ++W++ + GTC+ H V V + +D I++GS D + FW+
Sbjct: 279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338
Query: 1075 NDDAGGIKCVKNVTIHSSAILSI 1097
+ ++ H ++++S+
Sbjct: 339 KKSGNPLLMLQG---HRNSVISV 358
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 26/178 (14%)
Query: 922 HDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA--------------- 966
H + V CV+ + L + T +++ V + VA + S+A
Sbjct: 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 122
Query: 967 -----VLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTV 1019
+C D LA G D + IWDI + + GH + I S+ D +
Sbjct: 123 DLYIRSVCFSPDGK--FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 180
Query: 1020 ITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSD-RGIITGSSDGLLRFWEND 1076
++GS D T R+W + G C L+ G V V S D + I GS D +R W+++
Sbjct: 181 VSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/253 (20%), Positives = 95/253 (37%), Gaps = 13/253 (5%)
Query: 934 GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDI 993
G+ + T + D +++WD+ V + + ++Y S L +G D IWD+
Sbjct: 135 GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL 194
Query: 994 RAGRQMHKFLGHTKWIRSIRM---DRDTVITGSDDWTARMWSISRGTCDAVL-------A 1043
R G Q L + ++ + D + GS D R+W G L
Sbjct: 195 RTG-QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGT 253
Query: 1044 CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHW 1103
H V V ++ + +++GS D ++ W +A K + + I D
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 313
Query: 1104 LGIGAADNSMSLFHRPQERLGGF--SGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRI 1161
L + N + ++R F +G+ + Q +R +VAV + E
Sbjct: 314 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 373
Query: 1162 CSGGRNGLLRLWE 1174
+G + R+W+
Sbjct: 374 ATGSGDCKARIWK 386
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 98/208 (47%), Gaps = 8/208 (3%)
Query: 872 GSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQV--SCV 929
G + TL GH V +++ G V+SGS D++ VW + L+ L+ H+A V + V
Sbjct: 93 GEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKV 150
Query: 930 RMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVAN 989
S + LTAS D T+K+W + D + T + V+ G + D +
Sbjct: 151 VSFSENKFLTASADKTIKLW--QNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIK 208
Query: 990 IWDIRAGRQMHKFLGHTKWIRSIR-MDRDTVITGSDDWTARMWSISRGTCDAVLACHAGP 1048
+ D G + + GH ++ I+ + +++ +D T R+WS G+ V+ A
Sbjct: 209 LVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAIS 268
Query: 1049 VQCVEYSSSDRGIITGSSDGLLRFWEND 1076
+ V+ S+ II GSSD L+R + +
Sbjct: 269 IWSVD-CXSNGDIIVGSSDNLVRIFSQE 295
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 8/168 (4%)
Query: 914 QLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVL-CMEY 972
QL LKGHD V V + +V + S DGTV++W + D + TV L + Y
Sbjct: 9 QLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWS-KDDQWLGTVVYTGQGFLNSVCY 67
Query: 973 DDSTGILAAGGRDAVAN---IWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTAR 1029
D +L GG+D N ++ ++ +GH + S+ VI+GS D TA+
Sbjct: 68 DSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAK 127
Query: 1030 MWSISRGTCDAVLACHAGPVQCVEYSS-SDRGIITGSSDGLLRFWEND 1076
+W G+ L H V + S S+ +T S+D ++ W+ND
Sbjct: 128 VW--KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND 173
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 854 FISGSTDCLVKIWDPSLRGSELRATLKG-HTRTVRAINS-DRGKVVSGSDDQSVLVWDKQ 911
F++ S D +K+W + ++ T G H VR + D G +S S+D + + D
Sbjct: 158 FLTASADKTIKLW----QNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXH 213
Query: 912 TSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMW 949
T +L +GH++ V C+++L +++ D TV++W
Sbjct: 214 TGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIW 251
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 84/187 (44%), Gaps = 14/187 (7%)
Query: 852 GFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTV---RAINSDRGKVVSGSDDQSVLVW 908
G ISGS D K+W + L L+ H +V + ++ K ++ S D+++ +W
Sbjct: 115 GVVISGSWDKTAKVW----KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW 170
Query: 909 DKQTSQLLEELKG-HDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAV 967
Q ++++ G H+ V + ++ ++ S+DG +K+ D T + T S V
Sbjct: 171 --QNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFV 228
Query: 968 LCMEYDDSTGILAAGGRDAVANIWDIRAG--RQMHKFLGHTKWIRSIRMDRDTVITGSDD 1025
C++ + I++ G D IW G +Q+ + W + D +I GS D
Sbjct: 229 YCIKLLPNGDIVSC-GEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGD-IIVGSSD 286
Query: 1026 WTARMWS 1032
R++S
Sbjct: 287 NLVRIFS 293
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 12/191 (6%)
Query: 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDV 951
+ ++ GSDD + V++ T + + + + H + + + + VL+ S D TVK+W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 952 RTDTCV-ATVGRCSSAVLCMEYD-DSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWI 1009
+ + T V+C+ ++ A+G D +W + G+ F T
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQE 184
Query: 1010 RSIRM-------DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGII 1062
R + D+ +IT SDD T ++W +C A L H V + + II
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 1063 TGSSDGLLRFW 1073
+GS DG L+ W
Sbjct: 245 SGSEDGTLKIW 255
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 21/154 (13%)
Query: 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLK-GHTRTVRAIN----SDRGKVVSGSDDQ 903
+D F SG D VK+W SL S TL G R V ++ D+ +++ SDD
Sbjct: 151 KDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL 208
Query: 904 SVLVWDKQTSQLLEELKGHDAQVS-CVRMLSGERVLTASHDGTVKMWDVRT--------- 953
++ +WD QT + L+GH + VS V + +++ S DGT+K+W+ T
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
Query: 954 ----DTCVATVGRCSSAVLCMEYDDSTGILAAGG 983
C+AT + +D+ +L+ G
Sbjct: 269 GLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 52/191 (27%)
Query: 852 GFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWD 909
+ I GS D +++++ E + H +R A++ + V+SGSDD +V +W+
Sbjct: 68 NWIIVGSDDFRIRVFN--YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 910 KQTSQLLEE-LKGHDAQVSCV-------------------------------RMLSGER- 936
+ + LE+ +GH+ V CV + +G+
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 937 ---------------VLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAA 981
++TAS D T+K+WD +T +CVAT+ S V + + I+ +
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 982 GGRDAVANIWD 992
G D IW+
Sbjct: 246 GSEDGTLKIWN 256
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 4/141 (2%)
Query: 937 VLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG 996
VLT + G V++W+ T V ++ + V ++ + G D +++ G
Sbjct: 28 VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87
Query: 997 RQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRG-TCDAVLACHAGPVQCVE 1053
++ F H +IRSI + + V++GSDD T ++W+ + H V CV
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 1054 YSSSDRGII-TGSSDGLLRFW 1073
++ D +G D ++ W
Sbjct: 148 FNPKDPSTFASGCLDRTVKVW 168
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 12/191 (6%)
Query: 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDV 951
+ ++ GSDD + V++ T + + + + H + + + + VL+ S D TVK+W+
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 952 RTDTCV-ATVGRCSSAVLCMEYD-DSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWI 1009
+ + T V+C+ ++ A+G D +W + G+ F T
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQE 184
Query: 1010 RSIRM-------DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGII 1062
R + D+ +IT SDD T ++W +C A L H V + + II
Sbjct: 185 RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 1063 TGSSDGLLRFW 1073
+GS DG L+ W
Sbjct: 245 SGSEDGTLKIW 255
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 21/154 (13%)
Query: 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLK-GHTRTVRAIN----SDRGKVVSGSDDQ 903
+D F SG D VK+W SL S TL G R V ++ D+ +++ SDD
Sbjct: 151 KDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL 208
Query: 904 SVLVWDKQTSQLLEELKGHDAQVS-CVRMLSGERVLTASHDGTVKMWDVRT--------- 953
++ +WD QT + L+GH + VS V + +++ S DGT+K+W+ T
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
Query: 954 ----DTCVATVGRCSSAVLCMEYDDSTGILAAGG 983
C+AT + +D+ +L+ G
Sbjct: 269 GLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 52/191 (27%)
Query: 852 GFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWD 909
+ I GS D +++++ E + H +R A++ + V+SGSDD +V +W+
Sbjct: 68 NWIIVGSDDFRIRVFN--YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 910 KQTSQLLEE-LKGHDAQVSCV-------------------------------RMLSGER- 936
+ + LE+ +GH+ V CV + +G+
Sbjct: 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER 185
Query: 937 ---------------VLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAA 981
++TAS D T+K+WD +T +CVAT+ S V + + I+ +
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 982 GGRDAVANIWD 992
G D IW+
Sbjct: 246 GSEDGTLKIWN 256
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 4/141 (2%)
Query: 937 VLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG 996
VLT + G V++W+ T V ++ + V ++ + G D +++ G
Sbjct: 28 VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87
Query: 997 RQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRG-TCDAVLACHAGPVQCVE 1053
++ F H +IRSI + + V++GSDD T ++W+ + H V CV
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 1054 YSSSDRGII-TGSSDGLLRFW 1073
++ D +G D ++ W
Sbjct: 148 FNPKDPSTFASGCLDRTVKVW 168
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of
The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of
The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of
The Copi Vesicular Coat
Length = 814
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 12/188 (6%)
Query: 896 VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTD 954
++ GSDD + V++ T + + + + H + + + + VL+ S D TVK+W+ +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 955 TCVA-TVGRCSSAVLCMEYD-DSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSI 1012
+ T V+C+ ++ A+G D +W + G+ F T R +
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGV 187
Query: 1013 RM-------DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS 1065
D+ +IT SDD T ++W +C A L H V + + II+GS
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 1066 SDGLLRFW 1073
DG L+ W
Sbjct: 248 EDGTLKIW 255
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 8/111 (7%)
Query: 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLK-GHTRTVRAIN----SDRGKVVSGSDDQ 903
+D F SG D VK+W SL S TL G R V ++ D+ +++ SDD
Sbjct: 151 KDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL 208
Query: 904 SVLVWDKQTSQLLEELKGHDAQVS-CVRMLSGERVLTASHDGTVKMWDVRT 953
++ +WD QT + L+GH + VS V + +++ S DGT+K+W+ T
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 4/141 (2%)
Query: 937 VLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG 996
VLT + G V++W+ T V ++ + V ++ + G D +++ G
Sbjct: 28 VLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87
Query: 997 RQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRG-TCDAVLACHAGPVQCVE 1053
++ F H +IRSI + + V++GSDD T ++W+ + H V CV
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 1054 YSSSDRGII-TGSSDGLLRFW 1073
++ D +G D ++ W
Sbjct: 148 FNPKDPSTFASGCLDRTVKVW 168
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 79/190 (41%), Gaps = 52/190 (27%)
Query: 853 FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDK 910
+ I GS D +++++ E + H +R A++ + V+SGSDD +V +W+
Sbjct: 69 WIIVGSDDFRIRVFN--YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 911 QTSQLLEE-LKGHDAQVSCV-------------------------------RMLSGER-- 936
+ + LE+ +GH+ V CV + +G+
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 937 --------------VLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAG 982
++TAS D T+K+WD +T +CVAT+ S V + + I+ +G
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246
Query: 983 GRDAVANIWD 992
D IW+
Sbjct: 247 SEDGTLKIWN 256
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 12/188 (6%)
Query: 896 VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTD 954
++ GSDD + V++ T + + + + H + + + + VL+ S D TVK+W+ +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 955 TCVA-TVGRCSSAVLCMEYD-DSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSI 1012
+ T V+C+ ++ A+G D +W + G+ F T R +
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGV 187
Query: 1013 RM-------DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS 1065
D+ +IT SDD T ++W +C A L H V + + II+GS
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 1066 SDGLLRFW 1073
DG L+ W
Sbjct: 248 EDGTLKIW 255
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 21/153 (13%)
Query: 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLK-GHTRTVRAIN----SDRGKVVSGSDDQ 903
+D F SG D VK+W SL S TL G R V ++ D+ +++ SDD
Sbjct: 151 KDPSTFASGCLDRTVKVW--SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL 208
Query: 904 SVLVWDKQTSQLLEELKGHDAQVS-CVRMLSGERVLTASHDGTVKMWDVRT--------- 953
++ +WD QT + L+GH + VS V + +++ S DGT+K+W+ T
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
Query: 954 ----DTCVATVGRCSSAVLCMEYDDSTGILAAG 982
C+AT + +D+ +L+ G
Sbjct: 269 GLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 79/190 (41%), Gaps = 52/190 (27%)
Query: 853 FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDK 910
+ I GS D +++++ E + H +R A++ + V+SGSDD +V +W+
Sbjct: 69 WIIVGSDDFRIRVFN--YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 911 QTSQLLEE-LKGHDAQVSCV-------------------------------RMLSGER-- 936
+ + LE+ +GH+ V CV + +G+
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 937 --------------VLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAG 982
++TAS D T+K+WD +T +CVAT+ S V + + I+ +G
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246
Query: 983 GRDAVANIWD 992
D IW+
Sbjct: 247 SEDGTLKIWN 256
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 4/141 (2%)
Query: 937 VLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG 996
VLT + G V++W+ T V ++ + V ++ + G D +++ G
Sbjct: 28 VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87
Query: 997 RQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRG-TCDAVLACHAGPVQCVE 1053
++ F H +IRSI + + V++GSDD T ++W+ + H V CV
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 1054 YSSSDRGII-TGSSDGLLRFW 1073
++ D +G D ++ W
Sbjct: 148 FNPKDPSTFASGCLDRTVKVW 168
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A Resolution
Of 2.45 Angstrom
Length = 340
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 97/214 (45%), Gaps = 14/214 (6%)
Query: 875 LRATLKGHTRTVRAINSDR---GKVVSGSDDQSVLVWD---KQTSQLLEE--LKGHDAQV 926
LR TLKGH V I + ++S S D+++++W +T+ + + L+GH V
Sbjct: 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 89
Query: 927 SCVRMLS-GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD 985
S V + S G+ L+ S DGT+++WD+ T T + VL + + + +G RD
Sbjct: 90 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 149
Query: 986 AVANIWD-IRAGRQMHKFLGHTKWIRSIRMDRDT----VITGSDDWTARMWSISRGTCDA 1040
+W+ + + + H++W+ +R ++ +++ D ++W+++
Sbjct: 150 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT 209
Query: 1041 VLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074
H G + V S +G DG W+
Sbjct: 210 NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 243
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 20/190 (10%)
Query: 821 RIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLK 880
R +RGH+ H V+ + D F +SGS D +++WD + + R
Sbjct: 80 RALRGHS------HFVSDVVI------SSDGQFALSGSWDGTLRLWDLTTGTTTRR--FV 125
Query: 881 GHTRTVR--AINSDRGKVVSGSDDQSVLVWDK-QTSQLLEELKGHDAQVSCVRM---LSG 934
GHT+ V A +SD ++VSGS D+++ +W+ + + + H VSCVR S
Sbjct: 126 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 185
Query: 935 ERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR 994
+++ D VK+W++ + + + + A+GG+D A +WD+
Sbjct: 186 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 245
Query: 995 AGRQMHKFLG 1004
G+ ++ G
Sbjct: 246 EGKHLYTLDG 255
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s
Complex Obtained By Docking Homology Models Of The Rna
And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 97/214 (45%), Gaps = 14/214 (6%)
Query: 875 LRATLKGHTRTVRAINSDR---GKVVSGSDDQSVLVWD---KQTSQLLEE--LKGHDAQV 926
LR TLKGH V I + ++S S D+++++W +T+ + + L+GH V
Sbjct: 7 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 66
Query: 927 SCVRMLS-GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD 985
S V + S G+ L+ S DGT+++WD+ T T + VL + + + +G RD
Sbjct: 67 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 126
Query: 986 AVANIWD-IRAGRQMHKFLGHTKWIRSIRMDRDT----VITGSDDWTARMWSISRGTCDA 1040
+W+ + + + H++W+ +R ++ +++ D ++W+++
Sbjct: 127 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT 186
Query: 1041 VLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074
H G + V S +G DG W+
Sbjct: 187 NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWD 220
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 20/190 (10%)
Query: 821 RIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLK 880
R +RGH+ H V+ + D F +SGS D +++WD + + R
Sbjct: 57 RALRGHS------HFVSDVVI------SSDGQFALSGSWDGTLRLWDLTTGTTTRR--FV 102
Query: 881 GHTRTVR--AINSDRGKVVSGSDDQSVLVWDK-QTSQLLEELKGHDAQVSCVRM---LSG 934
GHT+ V A +SD ++VSGS D+++ +W+ + + + H VSCVR S
Sbjct: 103 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 162
Query: 935 ERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR 994
+++ D VK+W++ + + + + A+GG+D A +WD+
Sbjct: 163 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 222
Query: 995 AGRQMHKFLG 1004
G+ ++ G
Sbjct: 223 EGKHLYTLDG 232
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A
5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 94/218 (43%), Gaps = 22/218 (10%)
Query: 878 TLKGHTRTVRAIN--SDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQV-SCVRMLSG 934
TL+GH+ V +++ ++ +VS S D ++VW+ TSQ +K H V C +G
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 935 ERVLTASHDGTVKMWDVRTD--------TCVATVGRCSSAVLCMEYDDSTGILAAGGRDA 986
+ V D ++++ + G A C D L G D
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 987 VANIWDIRAGRQMHKF-----LGHTKWIRSI---RMDRDTVITGSDDWTARMWSISRGTC 1038
+WD+ G+++ F GHT + S+ ++ + I+GS D T R+W + R T
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL-RITS 239
Query: 1039 DAVLACHA--GPVQCVEYSSSDRGIITGSSDGLLRFWE 1074
AV H G + V++ + TGS DG R ++
Sbjct: 240 RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD 277
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 92/220 (41%), Gaps = 31/220 (14%)
Query: 880 KGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLL-----EELKGHDAQVSCVRM--L 932
KG+ + + + ++++GS DQ+ ++WD T Q + E GH A V + + L
Sbjct: 157 KGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL 216
Query: 933 SGERVLTASHDGTVKMWDVR-TDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991
+ ++ S D TV++WD+R T V T + +++ G D ++
Sbjct: 217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLF 276
Query: 992 DIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDW--TARMW--SISRGTC---DAVLA- 1043
D+R G Q+ + R D + I S + + R+ S G C D +LA
Sbjct: 277 DMRTGHQLQVYNREPD-----RNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE 331
Query: 1044 ----------CHAGPVQCVEYSSSDRGIITGSSDGLLRFW 1073
H G + C+ SS + TGS D L+ W
Sbjct: 332 MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 15/164 (9%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAIN--SDRGKVVSGSDDQSVLV 907
+A FISGS D V++WD + +R T GH + ++ D + +GSDD + +
Sbjct: 217 NANMFISGSCDTTVRLWDLRITSRAVR-TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRL 275
Query: 908 WDKQTSQLLE----ELKGHDAQVSCVR----MLSGERVLTASHDGTVKMWDVRTDTCVAT 959
+D +T L+ E +D ++ V +SG + +G +WD V
Sbjct: 276 FDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLN 335
Query: 960 VGRCSSA----VLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM 999
+G ++ + C+ L G D IW R++
Sbjct: 336 LGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRKI 379
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 15/158 (9%)
Query: 851 AGFFISGSTDCLVKIWDPSLRGSE-----LRATLKGHTRTVRAINSD---RGKVVSGSDD 902
+G +S S D + +WD S E + GHT V ++ S +DD
Sbjct: 190 SGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADD 249
Query: 903 QSVLVWD---KQTSQLLEELKGHDAQVSCVRMLS-GERVL-TASHDGTVKMWDVRT-DTC 956
Q +++WD TS+ + H A+V+C+ E +L T S D TV +WD+R
Sbjct: 250 QKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 309
Query: 957 VATVGRCSSAVLCMEYD-DSTGILAAGGRDAVANIWDI 993
+ + + +++ + ILA+ G D N+WD+
Sbjct: 310 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 31/191 (16%)
Query: 867 DPSLRGSELRATLKGHTRTVRAINSD---RGKVVSGSDDQSVLVWDKQTSQLLEELK--- 920
+P LR L+GH + ++ + G ++S SDD ++ +WD S + +E K
Sbjct: 168 NPDLR-------LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWD--ISAVPKEGKVVD 218
Query: 921 ------GHDAQVSCV--RMLSGERVLTASHDGTVKMWDVRTDTCVA---TVGRCSSAVLC 969
GH A V V +L + + D + +WD R++ +V ++ V C
Sbjct: 219 AKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNC 278
Query: 970 MEYDD-STGILAAGGRDAVANIWDIRAGR-QMHKFLGHTKWIRSIRMD--RDTVITGS-D 1024
+ ++ S ILA G D +WD+R + ++H F H I ++ +T++ S
Sbjct: 279 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 338
Query: 1025 DWTARMWSISR 1035
D +W +S+
Sbjct: 339 DRRLNVWDLSK 349
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 21/160 (13%)
Query: 852 GFFISGSTDCLVKIWDPSLRGSELRAT-----LKGHTRTVRAI------NSDRGKVVSGS 900
G+ +S S D + +WD + E R GHT V + S G V +
Sbjct: 195 GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV---A 251
Query: 901 DDQSVLVWD---KQTSQLLEELKGHDAQVSCVRMLS-GERVL-TASHDGTVKMWDVRT-D 954
DDQ +++WD TS+ + H A+V+C+ E +L T S D TV +WD+R
Sbjct: 252 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 311
Query: 955 TCVATVGRCSSAVLCMEYD-DSTGILAAGGRDAVANIWDI 993
+ + + +++ + ILA+ G D ++WD+
Sbjct: 312 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 97/231 (41%), Gaps = 35/231 (15%)
Query: 879 LKGHTRTVRAINSD---RGKVVSGSDDQSVLVWDKQTSQLLEEL-------KGHDAQVSC 928
L+GH + ++ + G ++S SDD ++ +WD + + GH A V
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 929 V--RMLSGERVLTASHDGTVKMWDVRTDTCVA---TVGRCSSAVLCMEYDD-STGILAAG 982
V +L + + D + +WD R + TV ++ V C+ ++ S ILA G
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 983 GRDAVANIWDIRAGR-QMHKFLGHTKWIRSIRMD--RDTVITGS-DDWTARMWSISR--- 1035
D +WD+R + ++H F H I ++ +T++ S D +W +S+
Sbjct: 297 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356
Query: 1036 --GTCDA---------VLACHAGPVQCVEYSSSDRGIITG-SSDGLLRFWE 1074
T DA + H + ++ ++ II S D +++ W+
Sbjct: 357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In
Complex With Initiation Factor 1. This File Contains The
40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In
Complex With Initiation Factor 1. This File Contains The
40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 45/236 (19%)
Query: 876 RATLKGHTRTVRAI--------NSDRGKVVSGSDDQSVLVWDKQTSQLLEE--------- 918
R L+GH+ V +I N D ++SGS D++V++W +L EE
Sbjct: 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIW-----KLYEEEQNGYFGIP 68
Query: 919 ---LKGHDAQVSCVRMLSGER--VLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYD 973
L GH+ VS + LS E +++S D T+++WD+RT T S V + +
Sbjct: 69 HKALTGHNHFVSDL-ALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS 127
Query: 974 -DSTGILAAGGRDAVANIWDIRAGRQMH--KFLGHTKWIRSIR----MDRDTVIT----- 1021
D+ IL+AG + +W+I + + H+ W+ +R M +
Sbjct: 128 PDNRQILSAGAEREI-KLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPY 186
Query: 1022 -GSDDWTARM--WSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074
S W R+ W+ + H V + S + + I TG D L W+
Sbjct: 187 FASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 20/163 (12%)
Query: 822 IIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRA---- 877
I+ GH+ +T++ ++ + ED+ ISGS D V IW L E
Sbjct: 16 ILEGHSDWVTSIVAGFSQK------ENEDSPVLISGSRDKTVMIW--KLYEEEQNGYFGI 67
Query: 878 ---TLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML 932
L GH V A++ + +S S D+++ +WD +T + GH ++V V
Sbjct: 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS 127
Query: 933 SGER-VLTASHDGTVKMWDVRTDTCVATVGR--CSSAVLCMEY 972
R +L+A + +K+W++ + ++ + S V C+ Y
Sbjct: 128 PDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRY 170
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 21/160 (13%)
Query: 852 GFFISGSTDCLVKIWDPSLRGSELRAT-----LKGHTRTVRAI------NSDRGKVVSGS 900
G+ +S S D + +WD + E R GHT V + S G V +
Sbjct: 197 GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV---A 253
Query: 901 DDQSVLVWD---KQTSQLLEELKGHDAQVSCVRM--LSGERVLTASHDGTVKMWDVRT-D 954
DDQ +++WD TS+ + H A+V+C+ S + T S D TV +WD+R
Sbjct: 254 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 313
Query: 955 TCVATVGRCSSAVLCMEYD-DSTGILAAGGRDAVANIWDI 993
+ + + +++ + ILA+ G D ++WD+
Sbjct: 314 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 97/231 (41%), Gaps = 35/231 (15%)
Query: 879 LKGHTRTVRAINSD---RGKVVSGSDDQSVLVWDKQTSQLLEEL-------KGHDAQVSC 928
L+GH + ++ + G ++S SDD ++ +WD + + GH A V
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 929 V--RMLSGERVLTASHDGTVKMWDVRTDTCVA---TVGRCSSAVLCMEYDD-STGILAAG 982
V +L + + D + +WD R + TV ++ V C+ ++ S ILA G
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Query: 983 GRDAVANIWDIRAGR-QMHKFLGHTKWIRSIRMD--RDTVITGS-DDWTARMWSISR--- 1035
D +WD+R + ++H F H I ++ +T++ S D +W +S+
Sbjct: 299 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 358
Query: 1036 --GTCDA---------VLACHAGPVQCVEYSSSDRGIITG-SSDGLLRFWE 1074
T DA + H + ++ ++ II S D +++ W+
Sbjct: 359 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 409
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 21/160 (13%)
Query: 852 GFFISGSTDCLVKIWDPSLRGSELRAT-----LKGHTRTVRAI------NSDRGKVVSGS 900
G+ +S S D + +WD + E R GHT V + S G V +
Sbjct: 199 GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV---A 255
Query: 901 DDQSVLVWD---KQTSQLLEELKGHDAQVSCVRM--LSGERVLTASHDGTVKMWDVRT-D 954
DDQ +++WD TS+ + H A+V+C+ S + T S D TV +WD+R
Sbjct: 256 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 315
Query: 955 TCVATVGRCSSAVLCMEYD-DSTGILAAGGRDAVANIWDI 993
+ + + +++ + ILA+ G D ++WD+
Sbjct: 316 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 97/231 (41%), Gaps = 35/231 (15%)
Query: 879 LKGHTRTVRAINSD---RGKVVSGSDDQSVLVWDKQTSQLLEEL-------KGHDAQVSC 928
L+GH + ++ + G ++S SDD ++ +WD + + GH A V
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 929 V--RMLSGERVLTASHDGTVKMWDVRTDTCVA---TVGRCSSAVLCMEYDD-STGILAAG 982
V +L + + D + +WD R + TV ++ V C+ ++ S ILA G
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 983 GRDAVANIWDIRAGR-QMHKFLGHTKWIRSIRMD--RDTVITGS-DDWTARMWSISR--- 1035
D +WD+R + ++H F H I ++ +T++ S D +W +S+
Sbjct: 301 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 360
Query: 1036 --GTCDA---------VLACHAGPVQCVEYSSSDRGIITG-SSDGLLRFWE 1074
T DA + H + ++ ++ II S D +++ W+
Sbjct: 361 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 411
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron
Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite Degron
Recognition By ApcC
Length = 431
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 93/212 (43%), Gaps = 19/212 (8%)
Query: 899 GSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTA-SHDGTVKMWDVR-TDTC 956
G+ V +WD Q + L + H A+V + S +L++ S G + DVR +
Sbjct: 176 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS--YILSSGSRSGHIHHHDVRVAEHH 233
Query: 957 VATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR----QMHKFLGHTKWIRSI 1012
VAT+ S V + + LA+GG D + N+W G + F H ++++
Sbjct: 234 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 293
Query: 1013 R---MDRDTVIT--GSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS-- 1065
+ + T G+ D R+W++ G C + + H+ V + +S + +I+G
Sbjct: 294 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKELISGHGF 352
Query: 1066 SDGLLRFWENDDAGGIKCVKNVTIHSSAILSI 1097
+ L W+ + +K H+S +LS+
Sbjct: 353 AQNQLVIWKYPTMAKVAELKG---HTSRVLSL 381
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 123/295 (41%), Gaps = 36/295 (12%)
Query: 894 GKVVSGSDDQSVLVWDKQTS---QLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWD 950
G V++ + D SV +W + QLL+ + + S + G + + V++WD
Sbjct: 127 GNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWD 186
Query: 951 VRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR-AGRQMHKFLGHTKWI 1009
V+ + + S+ V + ++ + IL++G R + D+R A + GH++ +
Sbjct: 187 VQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 244
Query: 1010 RSIRMDRD--TVITGSDDWTARMWSISRGTCDAV----LACHAGPVQCVEYSSSDRGIIT 1063
+R D + +G +D +W + G V H G V+ V + ++
Sbjct: 245 CGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 304
Query: 1064 ---GSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWL----GIGAADNSMSLF 1116
G+SD +R W N +G C+ V HS + SI H+ G G A N + ++
Sbjct: 305 TGGGTSDRHIRIW-NVCSGA--CLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIW 360
Query: 1117 HRP-QERLGGFSGTGSKMSGWQLYRTP----------QKTVAVVRCIASDLERKR 1160
P ++ G S++ L +P +T+ + RC D R+R
Sbjct: 361 KYPTMAKVAELKGHTSRVLS--LTMSPDGATVASAAADETLRLWRCFELDPARRR 413
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 857 GSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGK-VVSGSD--DQSVLVWDKQTS 913
G++D ++IW+ G+ L A + H++ + S K ++SG +++W T
Sbjct: 308 GTSDRHIRIWN-VCSGACLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 365
Query: 914 QLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMW 949
+ ELKGH ++V + M G V +A+ D T+++W
Sbjct: 366 AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 128/300 (42%), Gaps = 28/300 (9%)
Query: 816 IQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSEL 875
++ N+ + +G+++AL + V D F G + LV I+D + ++L
Sbjct: 111 LERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ-TKL 169
Query: 876 RATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWD-KQTSQLLEELKGHDAQVSCVRMLS- 933
R T+ GH V ++ +R + SGS ++ D + + + L+GH ++V + S
Sbjct: 170 R-TMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD 228
Query: 934 GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDD-STGILAAGG--RDAVANI 990
G ++ + +D V++WD R+ T ++AV + + + +LA GG D +
Sbjct: 229 GLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288
Query: 991 WD---------IRAGRQMHKFL--GHTKWIRSIRMDRDTVITGSDDWTARMWSISRG--T 1037
W+ + AG Q+ + H+K I S G D +WS S T
Sbjct: 289 WNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTH--------GFPDNNLSIWSYSSSGLT 340
Query: 1038 CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI 1097
+ H V S R + T +SD L+FW D +K +T S+ ++I
Sbjct: 341 KQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPITKTPSSSITI 400
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 93/212 (43%), Gaps = 19/212 (8%)
Query: 899 GSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTA-SHDGTVKMWDVR-TDTC 956
G+ V +WD Q + L + H A+V + S +L++ S G + DVR +
Sbjct: 165 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS--YILSSGSRSGHIHHHDVRVAEHH 222
Query: 957 VATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR----QMHKFLGHTKWIRSI 1012
VAT+ S V + + LA+GG D + N+W G + F H ++++
Sbjct: 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 282
Query: 1013 R---MDRDTVIT--GSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS-- 1065
+ + T G+ D R+W++ G C + + H+ V + +S + +I+G
Sbjct: 283 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKELISGHGF 341
Query: 1066 SDGLLRFWENDDAGGIKCVKNVTIHSSAILSI 1097
+ L W+ + +K H+S +LS+
Sbjct: 342 AQNQLVIWKYPTMAKVAELKG---HTSRVLSL 370
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 123/295 (41%), Gaps = 36/295 (12%)
Query: 894 GKVVSGSDDQSVLVWDKQTS---QLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWD 950
G V++ + D SV +W + QLL+ + + S + G + + V++WD
Sbjct: 116 GNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWD 175
Query: 951 VRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR-AGRQMHKFLGHTKWI 1009
V+ + + S+ V + ++ + IL++G R + D+R A + GH++ +
Sbjct: 176 VQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 233
Query: 1010 RSIRMDRD--TVITGSDDWTARMWSISRGTCDAV----LACHAGPVQCVEYSSSDRGIIT 1063
+R D + +G +D +W + G V H G V+ V + ++
Sbjct: 234 CGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 293
Query: 1064 ---GSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWL----GIGAADNSMSLF 1116
G+SD +R W N +G C+ V HS + SI H+ G G A N + ++
Sbjct: 294 TGGGTSDRHIRIW-NVCSGA--CLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIW 349
Query: 1117 HRP-QERLGGFSGTGSKMSGWQLYRTP----------QKTVAVVRCIASDLERKR 1160
P ++ G S++ L +P +T+ + RC D R+R
Sbjct: 350 KYPTMAKVAELKGHTSRVLS--LTMSPDGATVASAAADETLRLWRCFELDPARRR 402
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 857 GSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGK-VVSGSD--DQSVLVWDKQTS 913
G++D ++IW+ G+ L A + H++ + S K ++SG +++W T
Sbjct: 297 GTSDRHIRIWN-VCSGACLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 354
Query: 914 QLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMW 949
+ ELKGH ++V + M G V +A+ D T+++W
Sbjct: 355 AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 27/189 (14%)
Query: 867 DPSLRGSELRATLKGHTRTVRAI--NSD-RGKVVSGSDDQSVLVWD----KQTSQLLEE- 918
+P LR L+GH + + NS+ G ++S SDD +V +WD + ++++
Sbjct: 170 NPDLR-------LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAK 222
Query: 919 --LKGHDAQVSCV--RMLSGERVLTASHDGTVKMWDVRTDTCVAT---VGRCSSAVLCME 971
GH A V V +L + + D + +WD R++T V ++ V C+
Sbjct: 223 AIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLS 282
Query: 972 YDD-STGILAAGGRDAVANIWDIRAGR-QMHKFLGHTKWIRSIRMD--RDTVITGS-DDW 1026
++ S ILA G D +WD+R + ++H F H I + +T++ S D
Sbjct: 283 FNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDR 342
Query: 1027 TARMWSISR 1035
+W +S+
Sbjct: 343 RLNVWDLSK 351
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i
Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor Eif3i
Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 970 MEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDT--VITGSDDWT 1027
++Y+ +L + +D+ A++W G ++ GHT I SI +D T +TGS D++
Sbjct: 38 VKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYS 97
Query: 1028 ARMWSISRGTCDAVLACHAGPVQCVEYS 1055
++W +S G C A PV+ VE+S
Sbjct: 98 IKLWDVSNGQCVATWKSPV-PVKRVEFS 124
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 870 LRGSELRA-TLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQV 926
+GS ++A L GH R + + N + + S S D S VW + L L GH +
Sbjct: 18 FQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTI 77
Query: 927 SCVRM-LSGERVLTASHDGTVKMWDVRTDTCVAT 959
+ + + +T S D ++K+WDV CVAT
Sbjct: 78 WSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVAT 111
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 848 REDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSD--RGKVVSGSDDQSV 905
++ S S D +W SL G L TL GHT T+ +I+ D V+GS D S+
Sbjct: 41 NKEGDLLFSCSKDSSASVW-YSLNGERL-GTLDGHTGTIWSIDVDCFTKYCVTGSADYSI 98
Query: 906 LVWDKQTSQLLEELK 920
+WD Q + K
Sbjct: 99 KLWDVSNGQCVATWK 113
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 1001 KFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSD 1058
K GH + + ++ ++ D + + S D +A +W G L H G + ++
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT 86
Query: 1059 RGIITGSSDGLLRFWENDDAGGIKCV 1084
+ +TGS+D ++ W D +CV
Sbjct: 87 KYCVTGSADYSIKLW---DVSNGQCV 109
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 27/189 (14%)
Query: 867 DPSLRGSELRATLKGHTRTVRAI--NSD-RGKVVSGSDDQSVLVWD----KQTSQLLEE- 918
+P LR L+GH + + NS+ G ++S SDD +V +WD + ++++
Sbjct: 170 NPDLR-------LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAK 222
Query: 919 --LKGHDAQVSCV--RMLSGERVLTASHDGTVKMWDVRTDTCVAT---VGRCSSAVLCME 971
GH A V V +L + + D + +WD R++T V ++ V C+
Sbjct: 223 AIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLS 282
Query: 972 YDD-STGILAAGGRDAVANIWDIRAGR-QMHKFLGHTKWIRSIRMD--RDTVITGS-DDW 1026
++ S ILA G D +WD+R + ++H F H I + +T++ S D
Sbjct: 283 FNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDR 342
Query: 1027 TARMWSISR 1035
+W +S+
Sbjct: 343 RLNVWDLSK 351
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 888 AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERV--LTASHDGT 945
++ SD + VSG D SV VWD +L+ H ++V+CV G+ L+ DG
Sbjct: 146 SVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGR 205
Query: 946 VKMWDVRTDTCVATVGRCSSAVL 968
+ +WD R + C+S +
Sbjct: 206 ILLWDTRKPKPATRIDFCASDTI 228
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 8/147 (5%)
Query: 853 FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAIN-SDRGKVV-SGSDDQSVLVW-- 908
+ S S D IW + E TL+GH V+++ + G ++ + S D+SV VW
Sbjct: 75 YLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEV 134
Query: 909 -DKQTSQLLEELKGHDAQVS-CVRMLSGERVLTASHDGTVKMWDVRTD--TCVATVGRCS 964
++ + + L H V V S E + +AS+D TVK++ D C AT+
Sbjct: 135 DEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHE 194
Query: 965 SAVLCMEYDDSTGILAAGGRDAVANIW 991
S V + +D S LA+ D IW
Sbjct: 195 STVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 41/213 (19%), Positives = 85/213 (39%), Gaps = 22/213 (10%)
Query: 970 MEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFL---GHTKWIRSIRMDR--DTVITGSD 1024
+ ++ + +LA+ G D IW + K + GH + +R + + + + S
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 1025 DWTARMWSISRG--TCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIK 1082
D T +W ++ C L H V+ V ++ S + T S D + WE D+ +
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 1083 CVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYR 1140
CV + H+ + + + L + D+++ L+ ++ W
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED-------------DWVCCA 188
Query: 1141 TPQKTVAVVRCIASDLERKRICSGGRNGLLRLW 1173
T + + V +A D +R+ S + +R+W
Sbjct: 189 TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 24/222 (10%)
Query: 925 QVSCVRM-LSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYD-DSTGILAAG 982
QV+C+ G ++T +G +++W+ +T + + + ++ ++++ D T I++
Sbjct: 110 QVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMD 168
Query: 983 GRDAVANIWDIRAGRQMHKFLGHTKWIRSIR----------------MDRDTVITGSDDW 1026
+ V +W++ +G M F SI +D D +
Sbjct: 169 VEN-VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKG 227
Query: 1027 TARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKN 1086
++ I+ T L H GP+ +E++ +++ +++ S DG LR W + C
Sbjct: 228 AIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG 287
Query: 1087 VTIHSSAILSIN-AGDHWLGIGAADNSMSLFHRPQERLGGFS 1127
HS +I+S + GD + + D S+ L+ Q L S
Sbjct: 288 ---HSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALS 326
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/218 (18%), Positives = 89/218 (40%), Gaps = 21/218 (9%)
Query: 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLV 907
D ++G + +++W+ + L L H + ++ N D ++S + ++
Sbjct: 119 DGNSIVTGVENGELRLWN---KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTIL 175
Query: 908 WDKQTSQLLE--ELK----------GHDAQVSC---VRMLSGERVLTASHDGTVKMWDVR 952
W+ + +++ ELK H S V + ++ + G + ++ +
Sbjct: 176 WNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQIT 235
Query: 953 TDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSI 1012
T + + +E++D+ +L + D IW G + F GH++ I S
Sbjct: 236 EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSA 295
Query: 1013 R-MDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPV 1049
+ D VI+ S D + R+WS+ + T A+ P+
Sbjct: 296 SWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPI 333
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 91/211 (43%), Gaps = 17/211 (8%)
Query: 899 GSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVR-TDTCV 957
G+ V +WD Q + L + H A+V + S + + S G + DVR + V
Sbjct: 85 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS-YILSSGSRSGHIHHHDVRVAEHHV 143
Query: 958 ATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR----QMHKFLGHTKWIRSIR 1013
AT+ S V + + LA+GG D + N+W G + F H ++++
Sbjct: 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203
Query: 1014 ---MDRDTVIT--GSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS--S 1066
+ + T G+ D R+W++ G C + + H+ V + +S + +I+G +
Sbjct: 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKELISGHGFA 262
Query: 1067 DGLLRFWENDDAGGIKCVKNVTIHSSAILSI 1097
L W+ + +K H+S +LS+
Sbjct: 263 QNQLVIWKYPTMAKVAELKG---HTSRVLSL 290
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 106/248 (42%), Gaps = 23/248 (9%)
Query: 889 INSDRGKVVSGSDDQSVLVWDKQTS---QLLEELKGHDAQVSCVRMLSGERVLTASHDGT 945
++ G V++ + D SV +W + QLL+ + + S + G + +
Sbjct: 31 VDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAE 90
Query: 946 VKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR-AGRQMHKFLG 1004
V++WDV+ + + S+ V + ++ + IL++G R + D+R A + G
Sbjct: 91 VQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSG 148
Query: 1005 HTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAV----LACHAGPVQCVEYSSSD 1058
H++ + +R D + +G +D +W + G V H G V+ V +
Sbjct: 149 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 208
Query: 1059 RGIIT---GSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWL----GIGAADN 1111
++ G+SD +R W N +G C+ V HS + SI H+ G G A N
Sbjct: 209 SNVLATGGGTSDRHIRIW-NVCSGA--CLSAVDAHSQ-VCSILWSPHYKELISGHGFAQN 264
Query: 1112 SMSLFHRP 1119
+ ++ P
Sbjct: 265 QLVIWKYP 272
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 857 GSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGK-VVSGSD--DQSVLVWDKQTS 913
G++D ++IW+ G+ L A + H++ + S K ++SG +++W T
Sbjct: 217 GTSDRHIRIWN-VCSGACLSA-VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 274
Query: 914 QLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMW 949
+ ELKGH ++V + M G V +A+ D T+++W
Sbjct: 275 AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 854 FISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAIN--SDRGKVVSGSDDQSVLVWDKQ 911
FI G+T+ +K+ D + R + H + + ++S S D + +W +
Sbjct: 112 FILGTTEGDIKVLDSNFNLQ--REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 169
Query: 912 TSQLLEELKGHDAQVSCVRMLS-GERVLTASHDGTVKMWDVRTDTCVATVGR 962
L GH A V+ + ++ G VL+AS DGT+++W+ T T + T R
Sbjct: 170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR 221
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 1017 DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEND 1076
+ +I+ S D ++WS+ G+ L H V + R +++ S DG +R WE
Sbjct: 152 EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE-- 209
Query: 1077 DAGGIKCVKNVTIHS 1091
C TIH+
Sbjct: 210 ------CGTGTTIHT 218
Score = 33.5 bits (75), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 2/121 (1%)
Query: 919 LKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI 978
LK D L R + + +G +K+ D + S + +++ S
Sbjct: 94 LKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEA 153
Query: 979 LAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIR-MDRD-TVITGSDDWTARMWSISRG 1036
L + +D IW ++ G +GH + I +DR V++ S D T R+W G
Sbjct: 154 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG 213
Query: 1037 T 1037
T
Sbjct: 214 T 214
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 854 FISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAIN--SDRGKVVSGSDDQSVLVWDKQ 911
FI G+T+ +K+ D + R + H + + ++S S D + +W +
Sbjct: 109 FILGTTEGDIKVLDSNFNLQ--REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 166
Query: 912 TSQLLEELKGHDAQVSCVRMLS-GERVLTASHDGTVKMWDVRTDTCVATVGR 962
L GH A V+ + ++ G VL+AS DGT+++W+ T T + T R
Sbjct: 167 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR 218
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 1017 DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEND 1076
+ +I+ S D ++WS+ G+ L H V + R +++ S DG +R WE
Sbjct: 149 EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE-- 206
Query: 1077 DAGGIKCVKNVTIHS 1091
C TIH+
Sbjct: 207 ------CGTGTTIHT 215
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 2/121 (1%)
Query: 919 LKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI 978
LK D L R + + +G +K+ D + S + +++ S
Sbjct: 91 LKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEA 150
Query: 979 LAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIR-MDRD-TVITGSDDWTARMWSISRG 1036
L + +D IW ++ G +GH + I +DR V++ S D T R+W G
Sbjct: 151 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG 210
Query: 1037 T 1037
T
Sbjct: 211 T 211
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/287 (20%), Positives = 113/287 (39%), Gaps = 47/287 (16%)
Query: 856 SGSTDCLVKIWDPSLRGSELRATL------KGHTRTVRAINSDRGKVVSGSDDQSVLVWD 909
+G C VK+WD S G++ + + R+ + + D ++ G + ++ +WD
Sbjct: 68 TGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL-PDGCTLIVGGEASTLSIWD 125
Query: 910 --KQTSQLLEELKGHDAQVSCVRMLSGERV-LTASHDGTVKMWDVRTDTCVATVGRCSSA 966
T ++ EL + + +V + DG + +WD+ T V +
Sbjct: 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 185
Query: 967 VLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM--HKF------LGHT---KWIRSIRMD 1015
C++ + L GG D WD+R GRQ+ H F LG+ +W+ ++ M+
Sbjct: 186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWL-AVGME 244
Query: 1016 RDTV----ITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLR 1071
V + D + + H V ++++ + ++ D LL
Sbjct: 245 SSNVEVLHVNKPDKYQLHL--------------HESCVLSLKFAYCGKWFVSTGKDNLLN 290
Query: 1072 FWENDDAGGIKCVKNVTIHSSAILS--INAGDHWLGIGAADNSMSLF 1116
W I K SS++LS I+ D ++ G+ D +++
Sbjct: 291 AWRTPYGASIFQSKE----SSSVLSCDISVDDKYIVTGSGDKKATVY 333
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 854 FISGSTDCLVKIW--DPSLRGSELRATLKGHTRTVRAINSD-----RGKVVSGSDDQSVL 906
F++G D LVKIW + + L +TL+GH+ VR + R + S S D++ +
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 907 VWDKQTSQ------LLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMW 949
+W + Q LL+E K D LSG + + D V +W
Sbjct: 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Query: 854 FISGSTDCLVKIW--DPSLRGSELRATLKGHTRTVRAINSD-----RGKVVSGSDDQSVL 906
F++G D LVKIW + + L +TL+GH+ VR + R S S D++ +
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCI 232
Query: 907 VWDKQTSQ------LLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMW 949
+W + Q LL+E K D LSG + + D V +W
Sbjct: 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 888 AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGER--VLTASHDGT 945
++ S + VSGS D + VWD +L + H AQV+CV + L+ S D
Sbjct: 134 SVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNR 193
Query: 946 VKMWDVRTDTCVATVGRCSS 965
+ +WD R + +G CS+
Sbjct: 194 ILLWDTRCPKPASQIG-CSA 212
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 9/110 (8%)
Query: 855 ISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGK---VVSGSDDQSVLVWD-- 909
+SGS D +K+WD L + ++ + H V + + K +S S+D +L+WD
Sbjct: 143 VSGSKDICIKVWD--LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR 200
Query: 910 --KQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCV 957
K SQ+ G+ E + +GTV + D ++ +CV
Sbjct: 201 CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV 250
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 892 DRGKVVSGSDDQSVLVWDKQTSQLLEELK----GHDAQVSCVRMLS-GERVLTASHDGTV 946
+RG +V+ SD +V +W+ ++ L K HD VS V +LS G + ++ S D +
Sbjct: 93 ERGILVA-SDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICI 151
Query: 947 KMWDVRTDTCVATVGRCSSAVLCM---EYDDSTGILAAGGRDAVANIWDIRAGR 997
K+WD+ +++ ++ V C+ + DS + + D +WD R +
Sbjct: 152 KVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS--VFLSCSEDNRILLWDTRCPK 203
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 854 FISGSTDCLVKIW--DPSLRGSELRATLKGHTRTVRAINSD-----RGKVVSGSDDQSVL 906
F++G D LVKIW + + L +TL+GH+ VR + R + S S D++ +
Sbjct: 175 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 234
Query: 907 VWDKQTSQ------LLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMW 949
+W + Q LL+E K D LSG + + D V +W
Sbjct: 235 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 283
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 854 FISGSTDCLVKIW--DPSLRGSELRATLKGHTRTVRAINSD-----RGKVVSGSDDQSVL 906
F++G D LVKIW + + L +TL+GH+ VR + R + S S D++ +
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 907 VWDKQTSQ------LLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMW 949
+W + Q LL+E K D LSG + + D V +W
Sbjct: 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 854 FISGSTDCLVKIW--DPSLRGSELRATLKGHTRTVRAINSD-----RGKVVSGSDDQSVL 906
F++G D LVKIW + + L +TL+GH+ VR + R + S S D++ +
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI 232
Query: 907 VWDKQTSQ------LLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMW 949
+W + Q LL+E K D LSG + + D V +W
Sbjct: 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 24/160 (15%)
Query: 815 KIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG-- 872
++ N+ ++ GH V D+ + SGS DC V +W+ G
Sbjct: 69 RVDKNVPLVXGHTAP-----------VLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLV 117
Query: 873 ---SELRATLKGHTRTVRAIN---SDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQV 926
E TL+GHT+ V + + + ++S D +LVWD T + L G D
Sbjct: 118 LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTL-GPDVHP 176
Query: 927 SCVRML----SGERVLTASHDGTVKMWDVRTDTCVATVGR 962
+ + G + T+ D V++ + R T VA R
Sbjct: 177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR 216
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 92/227 (40%), Gaps = 43/227 (18%)
Query: 972 YDDSTGILAAGGRD----AVANIWDIRAGRQMHKFLGHTKWIRSI--RMDRDTVITGSDD 1025
+D S GILA G D V+ +D + H K IRS+ R + GS D
Sbjct: 20 FDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79
Query: 1026 WTARMWSISRGTCD--------AVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077
T +W+ + D A++ H V+ V +S+ + T S D + WE D+
Sbjct: 80 STVSIWA-KEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138
Query: 1078 AGG-IKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGW 1136
+G +C+ + HS + + ++H P E L S + W
Sbjct: 139 SGEEYECISVLQEHSQDVKHV-----------------IWH-PSEALLASSSYDDTVRIW 180
Query: 1137 QLYRTPQKTVAVVR-----CIASDLERK----RICSGGRNGLLRLWE 1174
+ Y + VAV+ +SD ++ R+CSG + +R+W+
Sbjct: 181 KDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 63/163 (38%), Gaps = 21/163 (12%)
Query: 852 GFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRG----KVVSGSDDQSVLV 907
S S D V+IW E A L GH TV + + D+ ++ SGSDD +V V
Sbjct: 166 ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV 225
Query: 908 W-------DKQTSQLLEEL--KGHDAQVSCVRMLSGERVLTASHDGTVKM-------WDV 951
W D Q + E + H QV V + + DG + + W V
Sbjct: 226 WKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKV 285
Query: 952 RTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR 994
+ + V +E + T ILA GG D + N W +
Sbjct: 286 FAKRALCHGVYEINVVKWLELNGKT-ILATGGDDGIVNFWSLE 327
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 24/160 (15%)
Query: 815 KIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG-- 872
++ N+ ++ GH V D+ + SGS DC V +W+ G
Sbjct: 69 RVDKNVPLVCGHTAP-----------VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV 117
Query: 873 ---SELRATLKGHTRTVRAIN---SDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQV 926
E TL+GHT+ V + + + ++S D +LVWD T + L G D
Sbjct: 118 LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL-GPDVHP 176
Query: 927 SCVRML----SGERVLTASHDGTVKMWDVRTDTCVATVGR 962
+ + G + T+ D V++ + R T VA R
Sbjct: 177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR 216
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 92/229 (40%), Gaps = 36/229 (15%)
Query: 823 IRGHAGAITALHCVTKREVWDL-VGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKG 881
+ GH+ I A H R + + VGD F+ P + S T
Sbjct: 156 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQG-----------PPFKFSASDRTHHK 204
Query: 882 HTRTVRAI--NSDRGK-VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVS----CVRMLSG 934
VR + + D G+ V++ D+ + +D ++ + L+ ++ V + L
Sbjct: 205 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS 264
Query: 935 ERVLTASHDGTVKMWDVRTDTCVA--TVGRCSSAVLCMEYDDSTGILAAG-GR------D 985
++ T D T+++WDV T CV T+ + + G++A G GR D
Sbjct: 265 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG------NQQVGVVATGNGRIISLSLD 318
Query: 986 AVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSIS 1034
N +++ + GH K I ++ + + +I+GS D WS S
Sbjct: 319 GTLNFYELGHDEVLKTISGHNKGITALTV--NPLISGSYDGRIMEWSSS 365
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 863 VKIWDPSLRGSELRA--TLKGHTRTVRAIN---SDRGKVVSGSDDQSVLVWD-KQTSQLL 916
+KIWD +G+E +L G + ++ + + V +G D + +WD +Q + +
Sbjct: 214 LKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPV 273
Query: 917 EELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTD 954
LK H+A++ V + E + T S DG++ WD TD
Sbjct: 274 SLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTD 313
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 17/84 (20%)
Query: 924 AQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYD---------- 973
+ + V L +LT + G +K+WD R G S +L + D
Sbjct: 192 STLHAVTFLRTPEILTVNSIGQLKIWDFRQQ------GNEPSQILSLTGDRVPLHCVDRH 245
Query: 974 -DSTGILAAGGRDAVANIWDIRAG 996
+ ++A GG+D + +IWD+R G
Sbjct: 246 PNQQHVVATGGQDGMLSIWDVRQG 269
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 37.0 bits (84), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 912 TSQLLEELKGHDAQVSCVRMLSGE--RVLTASHDGTVKMWDVRTDTCVATVGRCS---SA 966
T Q ++ GH ++ ++ + +L+ S D +++W+++TDT VA G
Sbjct: 99 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 158
Query: 967 VLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMH 1000
VL +YD + + G D +W I + R M+
Sbjct: 159 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMN 192
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 912 TSQLLEELKGHDAQVSCVRMLSGE--RVLTASHDGTVKMWDVRTDTCVATVGRCS---SA 966
T Q ++ GH ++ ++ + +L+ S D +++W+++TDT VA G
Sbjct: 140 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 199
Query: 967 VLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMH 1000
VL +YD + + G D +W I + R M+
Sbjct: 200 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMN 233
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 912 TSQLLEELKGHDAQVSCVRMLSGE--RVLTASHDGTVKMWDVRTDTCVATVGRCS---SA 966
T Q ++ GH ++ ++ + +L+ S D +++W+++TDT VA G
Sbjct: 104 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 163
Query: 967 VLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMH 1000
VL +YD + + G D +W I + R M+
Sbjct: 164 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMN 197
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 36.6 bits (83), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 912 TSQLLEELKGHDAQVSCVRMLSGE--RVLTASHDGTVKMWDVRTDTCVATVGRCS---SA 966
T Q ++ GH ++ ++ + +L+ S D +++W+++TDT VA G
Sbjct: 103 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 162
Query: 967 VLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMH 1000
VL +YD + + G D +W I + R M+
Sbjct: 163 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMN 196
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 912 TSQLLEELKGHDAQVSCVRMLSGE--RVLTASHDGTVKMWDVRTDTCVATVGRCS---SA 966
T Q ++ GH ++ ++ + +L+ S D +++W+++TDT VA G
Sbjct: 103 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 162
Query: 967 VLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMH 1000
VL +YD + + G D +W I + R M+
Sbjct: 163 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMN 196
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 1015 DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEY--SSSDRGIITGSSDGLLRF 1072
D V T S D TA+MW +S +A H PV+ + + + + ++TGS D L+F
Sbjct: 97 DGSKVFTASCDKTAKMWDLSSNQA-IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKF 155
Query: 1073 WE 1074
W+
Sbjct: 156 WD 157
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 934 GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTG--ILAAGGRDAVANIW 991
G +V TAS D T KMWD+ ++ + + + + V + + + + G D W
Sbjct: 98 GSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156
Query: 992 DIRAGRQM 999
D R+ M
Sbjct: 157 DTRSSNPM 164
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 101/260 (38%), Gaps = 43/260 (16%)
Query: 849 EDAGFFISGSTDCLVKIWDPSLRGS----ELRATLKGHTRTVRAINSDRGKVVSGSDDQS 904
D G F S S D +K+WD + + T+ H + +++ V G+
Sbjct: 110 HDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHH--MSPVSTKHCLVAVGTRGPK 167
Query: 905 VLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVL--TASHDGTVKMWDVRTDT-CVATV- 960
V + D ++ L+GH ++ V + TAS D VK+WDVR + C+ T+
Sbjct: 168 VQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD 227
Query: 961 ---GRCSSAV-------------LCMEYDDSTGI-LAAGGRDAVANIWD--------IRA 995
G+ S AV LC D G+ L G D +W+ +
Sbjct: 228 QHNGKKSQAVESANTAHNGKVNGLCFTSD---GLHLLTVGTDNRMRLWNSSNGENTLVNY 284
Query: 996 GRQMHKFLGHTKWIRSIRMDRDTVIT--GSDDWTARMWSISRGTCDAVLACHAGPVQCVE 1053
G+ + K+ S + V GS T ++++ G +L H V C
Sbjct: 285 GKVCNNSKKGLKFTVSCGCSSEFVFVPYGS---TIAVYTVYSGEQITMLKGHYKTVDCCV 341
Query: 1054 YSSSDRGIITGSSDGLLRFW 1073
+ S+ + + +GS D + W
Sbjct: 342 FQSNFQELYSGSRDCNILAW 361
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 64/163 (39%), Gaps = 25/163 (15%)
Query: 939 TASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTG---ILAAGGRDAVANIWDIRA 995
++S D T+K+WD T A V V + ++A G R + D+++
Sbjct: 117 SSSFDKTLKVWDTNTLQ-TADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175
Query: 996 GRQMHKFLGHTKWIRSI----RMDRDTVITGSDDWTARMWSISRGT-------------- 1037
G H GH + I ++ R D + T S D ++W + R +
Sbjct: 176 GSCSHILQGHRQEILAVSWSPRYDY-ILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234
Query: 1038 --CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDA 1078
++ H G V + ++S ++T +D +R W + +
Sbjct: 235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 34.3 bits (77), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 88/226 (38%), Gaps = 36/226 (15%)
Query: 823 IRGHAGAITALHCVTKREVWD-LVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKG 881
+ GH+ I A H R VGD F+ P + S T
Sbjct: 156 VSGHSQRINACHLKQSRPXRSXTVGDDGSVVFYQG-----------PPFKFSASDRTHHK 204
Query: 882 HTRTVRAI--NSDRGK-VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVS----CVRMLSG 934
VR + + D G+ V++ D+ + +D ++ + L+ ++ V + L
Sbjct: 205 QGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS 264
Query: 935 ERVLTASHDGTVKMWDVRTDTCVA--TVGRCSSAVLCMEYDDSTGILAAG-GR------D 985
++ T D T+++WDV T CV T+ + + G++A G GR D
Sbjct: 265 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG------NQQVGVVATGNGRIISLSLD 318
Query: 986 AVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMW 1031
N +++ + GH K I ++ + + +I+GS D W
Sbjct: 319 GTLNFYELGHDEVLKTISGHNKGITALTV--NPLISGSYDGRIXEW 362
>pdb|3IYN|A Chain A, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|B Chain B, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|C Chain C, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|D Chain D, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|E Chain E, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|F Chain F, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|G Chain G, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|H Chain H, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|I Chain I, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|J Chain J, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|K Chain K, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|L Chain L, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|1VSZ|A Chain A, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|B Chain B, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|C Chain C, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|D Chain D, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|E Chain E, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|F Chain F, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|G Chain G, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|H Chain H, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|I Chain I, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|J Chain J, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|K Chain K, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|L Chain L, Crystal Structure Of Human Adenovirus At 3.5a
Length = 952
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 375 FLASILGGYRNFIENTGTQVFNAQAFLKKRSRSTNQPPDPMITQFLDSQGFLDYLERGLG 434
FL +L Y N G Q F K R S + PM Q +D + DY + G+
Sbjct: 766 FLVQMLANY-----NIGYQGFYIPESYKDRMYSFFRNFQPMSRQVVDDTKYKDYQQVGIL 820
Query: 435 SDENNSNLLDKLQDAIGRGQ 454
NNS + L + GQ
Sbjct: 821 HQHNNSGFVGYLAPTMREGQ 840
>pdb|2BVI|F Chain F, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|G Chain G, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|H Chain H, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|I Chain I, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|J Chain J, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|K Chain K, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|L Chain L, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|M Chain M, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|N Chain N, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|O Chain O, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|P Chain P, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|Q Chain Q, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|1P30|A Chain A, Refinement Of Adenovirus Type 5 Hexon With Cns
pdb|3TG7|A Chain A, Crystal Structure Of Adenovirus Serotype 5 Hexon At 1.6a
Resolution
Length = 951
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 375 FLASILGGYRNFIENTGTQVFNAQAFLKKRSRSTNQPPDPMITQFLDSQGFLDYLERGLG 434
FL +L Y N G Q F K R S + PM Q +D + DY + G+
Sbjct: 765 FLVQMLANY-----NIGYQGFYIPESYKDRMYSFFRNFQPMSRQVVDDTKYKDYQQVGIL 819
Query: 435 SDENNSNLLDKLQDAIGRGQ 454
NNS + L + GQ
Sbjct: 820 HQHNNSGFVGYLAPTMREGQ 839
>pdb|2EIG|A Chain A, Lotus Tetragonolobus Seed Lectin (Isoform)
pdb|2EIG|B Chain B, Lotus Tetragonolobus Seed Lectin (Isoform)
pdb|2EIG|C Chain C, Lotus Tetragonolobus Seed Lectin (Isoform)
pdb|2EIG|D Chain D, Lotus Tetragonolobus Seed Lectin (Isoform)
Length = 234
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 854 FISGSTDCLVKIWDP-SLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQT 912
F++ D +WDP SLR S + + +++A+N +R VSGS +++ +++D T
Sbjct: 114 FVAVEFDSHPNVWDPKSLRSSHIGIDVNS-IMSLKAVNWNR---VSGSLEKATIIYDSDT 169
Query: 913 SQLLEELKGHDAQVSCV 929
L + + Q++ +
Sbjct: 170 KILTVVMTHQNGQITTI 186
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 106/279 (37%), Gaps = 54/279 (19%)
Query: 858 STDCLVKIWDPSLRGSELRATLKGHTRTVRAI---NSDRGKVV-SGSDDQSVLVWDKQ-- 911
S+D VKI+D G L A L+GH V + + G ++ S S D+ V++W ++
Sbjct: 32 SSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG 91
Query: 912 TSQLLEELKGHDAQVSCVRMLS---GERVLTASHDGTVKM--------WDVRTDTCVATV 960
T + E GHD+ V+ V G + S DG + + W+V+ T+
Sbjct: 92 TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTI 151
Query: 961 GRCSSAVLCMEY------DDSTGI-------LAAGGRDAVANIWDIRAGRQM---HKFLG 1004
G C++ D +G A+GG D + +W Q K
Sbjct: 152 G-CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA 210
Query: 1005 HTKWIR------SIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGP---------V 1049
H+ W+R SI + T+ + S D +W TCD + P V
Sbjct: 211 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW-----TCDDASSNTWSPKLLHKFNDVV 265
Query: 1050 QCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVT 1088
V +S + + D + W+ G C+ +V
Sbjct: 266 WHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVN 304
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 28/223 (12%)
Query: 854 FISGSTDCLVKIWD-PSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWD- 909
ISGS D V I++ P + ++T HT+ V ++ N D S D ++++++
Sbjct: 163 IISGSDDNTVAIFEGPPFK---FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 219
Query: 910 ---KQTSQLLEELKGHDAQVSCVRMLS----GERVLTASHDGTVKMWDVRTDTCVATVGR 962
+T ++ + A V L+ G ++ +AS D T+K+W+V T T+
Sbjct: 220 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI-- 277
Query: 963 CSSAVLCMEYDDSTGI------LAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR 1016
V D GI L + + N + G GH K I ++
Sbjct: 278 ---PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA 334
Query: 1017 D--TVITGSDDWTARMWSISRGTCDAVLA-CHAGPVQCVEYSS 1056
D T+ + + W IS G + V HA + ++ +S
Sbjct: 335 DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS 377
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 882 HTRTVRAIN--SDRGKVVSGSDDQSVLVWD-KQTSQLLEELKGHDA--QVSCVRMLSGER 936
HT V ++ D ++ +GS D SV+VW+ + S +KG A V+ V L+
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT 594
Query: 937 VLTASHDGTVKMWDV 951
+++A D +K W+V
Sbjct: 595 IVSAGQDSNIKFWNV 609
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 896 VVSGSDDQSVLVW--DKQTS--QLLEELKGHDAQVSCVRMLS---GERVLTASHDGTVKM 948
V + S DQ + V+ DK TS +L + + HD+ + + S G + +AS+D TVK+
Sbjct: 26 VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85
Query: 949 WDVRTD 954
W+ D
Sbjct: 86 WEEDPD 91
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 896 VVSGSDDQSVLVW--DKQTS--QLLEELKGHDAQVSCVRMLS---GERVLTASHDGTVKM 948
V + S DQ + V+ DK TS +L + + HD+ + + S G + +AS+D TVK+
Sbjct: 26 VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85
Query: 949 WDVRTD 954
W+ D
Sbjct: 86 WEEDPD 91
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 896 VVSGSDDQSVLVW--DKQTS--QLLEELKGHDAQVSCVRMLS---GERVLTASHDGTVKM 948
V + S DQ + V+ DK TS +L + + HD+ + + S G + +AS+D TVK+
Sbjct: 24 VATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 83
Query: 949 WDVRTD 954
W+ D
Sbjct: 84 WEEDPD 89
>pdb|2OBE|A Chain A, Crystal Structure Of Chimpanzee Adenovirus (Type 68SIMIAN
25) MAJOR Coat Protein Hexon
pdb|2OBE|B Chain B, Crystal Structure Of Chimpanzee Adenovirus (Type 68SIMIAN
25) MAJOR Coat Protein Hexon
pdb|2OBE|C Chain C, Crystal Structure Of Chimpanzee Adenovirus (Type 68SIMIAN
25) MAJOR Coat Protein Hexon
Length = 932
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 375 FLASILGGYRNFIENTGTQVFNAQAFLKKRSRSTNQPPDPMITQFLDSQGFLDYLERGLG 434
FL +L Y N G Q F K R S + PM Q +D + DY L
Sbjct: 746 FLVQMLAHY-----NIGYQGFYVPEGYKDRMYSFFRNFQPMSRQVVDEVNYKDYQAVTLA 800
Query: 435 SDENNSNLLDKLQDAIGRGQ 454
NNS + L + +GQ
Sbjct: 801 YQHNNSGFVGYLAPTMRQGQ 820
>pdb|1P2Z|A Chain A, Refinement Of Adenovirus Type 2 Hexon With Cns
Length = 967
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 375 FLASILGGYRNFIENTGTQVFNAQAFLKKRSRSTNQPPDPMITQFLDSQGFLDYLERGLG 434
FL +L Y N G Q F K R S + PM Q +D + +Y + G+
Sbjct: 781 FLVQMLANY-----NIGYQGFYIPESYKDRMYSFFRNFQPMSRQVVDDTKYKEYQQVGIL 835
Query: 435 SDENNSNLLDKLQDAIGRGQ 454
NNS + L + GQ
Sbjct: 836 HQHNNSGFVGYLAPTMREGQ 855
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,182,645
Number of Sequences: 62578
Number of extensions: 1476750
Number of successful extensions: 4156
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 2999
Number of HSP's gapped (non-prelim): 366
length of query: 1179
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1069
effective length of database: 8,089,757
effective search space: 8647950233
effective search space used: 8647950233
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)