Query 001039
Match_columns 1179
No_of_seqs 1261 out of 4542
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 14:06:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001039.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001039hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1090 Predicted dual-specifi 100.0 1.7E-82 3.7E-87 723.6 31.8 608 1-685 1-640 (1732)
2 KOG3569 RAS signaling inhibito 100.0 7.3E-66 1.6E-70 540.6 27.8 378 2-452 11-397 (425)
3 KOG3570 MAPK-activating protei 100.0 3.4E-51 7.5E-56 462.0 25.6 417 2-438 9-561 (1588)
4 KOG0271 Notchless-like WD40 re 100.0 7.8E-49 1.7E-53 412.4 24.6 362 759-1174 106-479 (480)
5 KOG2080 Uncharacterized conser 100.0 2.4E-48 5.3E-53 439.3 17.6 420 2-433 67-645 (1295)
6 KOG0271 Notchless-like WD40 re 100.0 7.3E-42 1.6E-46 359.9 25.9 313 735-1074 109-479 (480)
7 KOG0272 U4/U6 small nuclear ri 100.0 2.9E-39 6.3E-44 345.5 22.3 277 767-1074 174-458 (459)
8 KOG0272 U4/U6 small nuclear ri 100.0 5.5E-39 1.2E-43 343.4 23.3 269 888-1174 182-458 (459)
9 KOG0291 WD40-repeat-containing 100.0 2.2E-36 4.8E-41 342.6 43.6 394 742-1176 56-508 (893)
10 KOG0319 WD40-repeat-containing 100.0 9.8E-38 2.1E-42 354.1 32.3 364 766-1178 103-579 (775)
11 KOG0291 WD40-repeat-containing 100.0 6.1E-36 1.3E-40 339.1 42.8 371 762-1179 139-553 (893)
12 KOG0318 WD40 repeat stress pro 100.0 1.2E-35 2.5E-40 325.1 42.4 385 765-1177 56-561 (603)
13 KOG0286 G-protein beta subunit 100.0 1.7E-35 3.7E-40 303.0 33.2 281 820-1117 48-343 (343)
14 KOG2127 Calmodulin-binding pro 100.0 1E-37 2.2E-42 373.7 17.8 343 189-548 5-366 (1020)
15 KOG0319 WD40-repeat-containing 100.0 3.4E-35 7.3E-40 333.6 31.5 381 759-1176 138-619 (775)
16 smart00799 DENN Domain found i 100.0 4.5E-36 9.8E-41 309.2 19.6 180 123-306 1-183 (183)
17 KOG0273 Beta-transducin family 100.0 2.5E-34 5.5E-39 311.2 32.1 334 763-1119 173-523 (524)
18 PF02141 DENN: DENN (AEX-3) do 100.0 1.3E-36 2.7E-41 317.6 13.1 183 122-306 1-185 (185)
19 KOG0286 G-protein beta subunit 100.0 1.2E-33 2.5E-38 289.6 32.7 282 762-1074 49-343 (343)
20 KOG0318 WD40 repeat stress pro 100.0 1.9E-32 4.2E-37 300.0 40.6 369 756-1176 177-602 (603)
21 KOG0306 WD40-repeat-containing 100.0 6.8E-33 1.5E-37 314.3 37.4 365 759-1176 98-622 (888)
22 KOG0279 G protein beta subunit 100.0 1.7E-32 3.7E-37 279.7 31.6 288 819-1119 7-313 (315)
23 KOG0279 G protein beta subunit 100.0 4.5E-32 9.8E-37 276.7 32.9 292 873-1177 5-314 (315)
24 KOG0315 G-protein beta subunit 100.0 2.6E-32 5.6E-37 273.5 29.4 272 893-1179 10-291 (311)
25 KOG0273 Beta-transducin family 100.0 4.8E-32 1E-36 293.6 32.4 324 820-1176 172-523 (524)
26 KOG0295 WD40 repeat-containing 100.0 4.9E-33 1.1E-37 292.8 23.1 309 849-1175 74-405 (406)
27 KOG0315 G-protein beta subunit 100.0 8.2E-32 1.8E-36 269.9 30.1 282 781-1098 11-307 (311)
28 KOG0296 Angio-associated migra 100.0 1.5E-31 3.1E-36 282.1 33.1 327 817-1176 54-398 (399)
29 KOG0295 WD40 repeat-containing 100.0 1E-32 2.2E-37 290.4 23.7 283 761-1075 101-405 (406)
30 KOG0296 Angio-associated migra 100.0 1.9E-31 4.2E-36 281.1 32.5 324 758-1119 54-398 (399)
31 KOG0281 Beta-TrCP (transducin 100.0 1.1E-33 2.3E-38 294.3 14.6 275 826-1121 196-479 (499)
32 KOG0306 WD40-repeat-containing 100.0 5.9E-31 1.3E-35 298.6 36.4 362 764-1178 61-582 (888)
33 KOG0285 Pleiotropic regulator 100.0 6.5E-32 1.4E-36 282.7 26.3 291 873-1176 141-439 (460)
34 KOG0281 Beta-TrCP (transducin 100.0 2E-33 4.4E-38 292.2 14.8 281 882-1178 196-479 (499)
35 KOG1408 WD40 repeat protein [F 100.0 3.9E-31 8.4E-36 296.8 32.3 402 735-1177 50-714 (1080)
36 KOG0263 Transcription initiati 100.0 1.1E-31 2.4E-36 309.2 27.3 255 768-1036 378-651 (707)
37 KOG0265 U5 snRNP-specific prot 100.0 3.5E-31 7.5E-36 272.7 28.1 277 764-1073 43-335 (338)
38 KOG0284 Polyadenylation factor 100.0 7.5E-33 1.6E-37 295.0 16.1 275 769-1077 97-381 (464)
39 KOG0265 U5 snRNP-specific prot 100.0 6.2E-31 1.3E-35 270.9 27.7 284 875-1174 39-336 (338)
40 KOG0645 WD40 repeat protein [G 100.0 4.3E-30 9.4E-35 261.1 33.0 287 874-1176 5-311 (312)
41 KOG0284 Polyadenylation factor 100.0 3.7E-32 8E-37 289.7 16.7 273 885-1175 100-379 (464)
42 KOG0285 Pleiotropic regulator 100.0 6.6E-31 1.4E-35 275.2 25.6 286 758-1077 140-440 (460)
43 KOG0263 Transcription initiati 100.0 1.7E-30 3.6E-35 299.5 27.1 318 833-1164 372-703 (707)
44 KOG0645 WD40 repeat protein [G 100.0 2.9E-29 6.2E-34 255.1 31.4 282 763-1076 9-311 (312)
45 KOG0293 WD40 repeat-containing 100.0 4.9E-30 1.1E-34 273.2 25.7 317 729-1077 184-514 (519)
46 KOG0282 mRNA splicing factor [ 100.0 3.5E-31 7.6E-36 288.5 17.0 286 873-1174 204-503 (503)
47 cd00200 WD40 WD40 domain, foun 100.0 8.9E-29 1.9E-33 276.2 36.8 280 821-1117 3-289 (289)
48 cd00200 WD40 WD40 domain, foun 100.0 1E-28 2.2E-33 275.7 36.9 280 877-1174 3-289 (289)
49 KOG0266 WD40 repeat-containing 100.0 1.9E-29 4.1E-34 301.1 32.8 280 767-1076 158-454 (456)
50 KOG0276 Vesicle coat complex C 100.0 3.4E-29 7.3E-34 278.8 32.1 277 822-1115 8-295 (794)
51 KOG0276 Vesicle coat complex C 100.0 6.5E-29 1.4E-33 276.5 33.8 274 765-1071 10-294 (794)
52 KOG0316 Conserved WD40 repeat- 100.0 1.6E-29 3.5E-34 251.4 26.0 278 876-1174 10-297 (307)
53 KOG0266 WD40 repeat-containing 100.0 1.2E-28 2.7E-33 294.0 34.0 282 877-1176 152-454 (456)
54 PLN00181 protein SPA1-RELATED; 100.0 6.3E-28 1.4E-32 309.4 42.0 295 822-1175 478-792 (793)
55 KOG0293 WD40 repeat-containing 100.0 2.6E-29 5.7E-34 267.6 22.2 282 876-1177 217-514 (519)
56 KOG0292 Vesicle coat complex C 100.0 4.2E-28 9.2E-33 278.8 33.5 336 769-1164 10-383 (1202)
57 KOG0282 mRNA splicing factor [ 100.0 1.4E-29 3.1E-34 275.9 17.3 283 819-1117 206-503 (503)
58 KOG0278 Serine/threonine kinas 100.0 3.8E-29 8.3E-34 250.6 18.6 282 877-1179 8-300 (334)
59 KOG0313 Microtubule binding pr 100.0 2.5E-28 5.3E-33 258.7 25.4 286 759-1077 96-419 (423)
60 KOG0316 Conserved WD40 repeat- 100.0 5.5E-28 1.2E-32 240.5 25.9 277 819-1117 9-297 (307)
61 KOG0274 Cdc4 and related F-box 100.0 4E-28 8.6E-33 288.1 29.7 272 769-1079 209-485 (537)
62 PLN00181 protein SPA1-RELATED; 100.0 5.2E-27 1.1E-31 301.0 40.8 285 764-1075 479-792 (793)
63 KOG0643 Translation initiation 100.0 2.8E-27 6.1E-32 239.8 28.4 295 878-1177 5-318 (327)
64 KOG0274 Cdc4 and related F-box 100.0 1.3E-27 2.7E-32 283.8 30.4 275 882-1179 207-485 (537)
65 KOG0292 Vesicle coat complex C 100.0 3.1E-27 6.7E-32 271.8 30.1 281 823-1121 5-323 (1202)
66 KOG0313 Microtubule binding pr 100.0 3.3E-27 7.1E-32 250.2 27.3 279 881-1176 103-418 (423)
67 KOG0278 Serine/threonine kinas 100.0 2.4E-28 5.2E-33 244.8 17.7 284 758-1078 4-299 (334)
68 KOG0640 mRNA cleavage stimulat 100.0 6.4E-27 1.4E-31 241.0 23.3 320 743-1076 84-426 (430)
69 KOG0643 Translation initiation 100.0 3.1E-26 6.8E-31 232.3 26.7 283 760-1077 2-318 (327)
70 KOG0308 Conserved WD40 repeat- 99.9 1.4E-26 3.1E-31 259.8 22.2 324 849-1177 35-394 (735)
71 KOG0275 Conserved WD40 repeat- 99.9 3.7E-27 8E-32 243.3 14.5 268 888-1174 220-507 (508)
72 KOG1539 WD repeat protein [Gen 99.9 1.2E-24 2.5E-29 250.9 36.3 385 765-1178 111-608 (910)
73 KOG0275 Conserved WD40 repeat- 99.9 7.8E-27 1.7E-31 240.9 15.9 275 825-1117 211-507 (508)
74 KOG0301 Phospholipase A2-activ 99.9 1.6E-25 3.4E-30 253.5 26.3 278 819-1120 6-289 (745)
75 KOG1407 WD40 repeat protein [F 99.9 3.2E-25 6.9E-30 224.5 25.3 280 877-1177 14-312 (313)
76 KOG0268 Sof1-like rRNA process 99.9 2E-26 4.4E-31 242.6 16.8 281 874-1176 57-345 (433)
77 KOG0268 Sof1-like rRNA process 99.9 1.2E-26 2.5E-31 244.4 14.7 283 819-1119 58-345 (433)
78 KOG1407 WD40 repeat protein [F 99.9 7.3E-25 1.6E-29 221.9 27.1 274 762-1067 14-293 (313)
79 KOG0277 Peroxisomal targeting 99.9 2.1E-25 4.5E-30 224.9 22.4 238 826-1075 59-308 (311)
80 KOG2106 Uncharacterized conser 99.9 2.5E-23 5.4E-28 227.3 38.7 367 757-1175 93-520 (626)
81 KOG0310 Conserved WD40 repeat- 99.9 6.6E-25 1.4E-29 240.3 26.1 278 764-1077 22-310 (487)
82 KOG0305 Anaphase promoting com 99.9 5.1E-25 1.1E-29 251.5 26.4 269 775-1078 184-463 (484)
83 KOG0288 WD40 repeat protein Ti 99.9 6.7E-26 1.5E-30 242.6 16.6 281 877-1174 169-459 (459)
84 KOG0288 WD40 repeat protein Ti 99.9 5.5E-26 1.2E-30 243.3 16.0 280 819-1117 167-459 (459)
85 KOG1539 WD repeat protein [Gen 99.9 8.9E-24 1.9E-28 243.6 34.8 360 763-1175 197-647 (910)
86 KOG0308 Conserved WD40 repeat- 99.9 2.7E-25 5.8E-30 249.7 20.2 318 778-1120 35-394 (735)
87 KOG0301 Phospholipase A2-activ 99.9 2.3E-24 5.1E-29 244.1 27.0 278 872-1177 3-289 (745)
88 KOG0973 Histone transcription 99.9 3.4E-24 7.3E-29 255.6 29.2 293 767-1078 12-357 (942)
89 KOG0277 Peroxisomal targeting 99.9 1.4E-24 2.9E-29 219.0 21.4 259 901-1175 36-308 (311)
90 PTZ00421 coronin; Provisional 99.9 2.4E-23 5.1E-28 247.5 34.9 282 760-1058 12-315 (493)
91 KOG0283 WD40 repeat-containing 99.9 1.9E-24 4.1E-29 252.1 24.7 244 820-1077 259-577 (712)
92 KOG0289 mRNA splicing factor [ 99.9 8.2E-24 1.8E-28 227.6 26.9 273 890-1175 228-505 (506)
93 KOG0299 U3 snoRNP-associated p 99.9 4.7E-24 1E-28 231.8 25.1 287 761-1065 135-444 (479)
94 KOG0640 mRNA cleavage stimulat 99.9 6.3E-24 1.4E-28 219.0 23.4 305 819-1176 104-426 (430)
95 KOG1408 WD40 repeat protein [F 99.9 1.2E-23 2.6E-28 237.0 27.3 331 770-1121 326-715 (1080)
96 KOG2048 WD40 repeat protein [G 99.9 4E-22 8.8E-27 225.9 39.1 371 766-1179 67-508 (691)
97 KOG0305 Anaphase promoting com 99.9 1.4E-23 3.1E-28 239.7 27.6 263 850-1120 187-462 (484)
98 KOG0641 WD40 repeat protein [G 99.9 2.2E-22 4.8E-27 198.8 31.9 299 762-1076 26-349 (350)
99 KOG1446 Histone H3 (Lys4) meth 99.9 1.8E-22 3.8E-27 211.3 32.7 280 877-1176 8-303 (311)
100 KOG2106 Uncharacterized conser 99.9 4.7E-22 1E-26 217.4 37.0 355 769-1175 247-625 (626)
101 KOG0300 WD40 repeat-containing 99.9 1.9E-23 4.2E-28 215.6 24.5 304 853-1178 126-478 (481)
102 PTZ00420 coronin; Provisional 99.9 2.1E-22 4.6E-27 240.0 36.3 245 899-1158 50-318 (568)
103 KOG0639 Transducin-like enhanc 99.9 4.1E-24 8.9E-29 232.6 19.2 287 760-1075 411-703 (705)
104 PF12335 SBF2: Myotubularin pr 99.9 2.8E-25 6.1E-30 230.5 9.6 147 522-695 1-159 (225)
105 KOG0299 U3 snoRNP-associated p 99.9 4.3E-23 9.2E-28 224.4 25.7 274 820-1107 135-443 (479)
106 KOG0289 mRNA splicing factor [ 99.9 5.6E-23 1.2E-27 221.3 26.1 276 828-1118 220-505 (506)
107 KOG0294 WD40 repeat-containing 99.9 8.7E-23 1.9E-27 212.1 26.2 241 819-1078 35-283 (362)
108 KOG0300 WD40 repeat-containing 99.9 2.9E-23 6.4E-28 214.3 22.6 318 762-1119 142-476 (481)
109 KOG1063 RNA polymerase II elon 99.9 7.7E-23 1.7E-27 231.6 27.9 337 819-1178 183-650 (764)
110 KOG2048 WD40 repeat protein [G 99.9 1.3E-21 2.9E-26 221.8 36.8 285 822-1119 20-319 (691)
111 KOG0310 Conserved WD40 repeat- 99.9 5.2E-23 1.1E-27 225.5 24.4 273 827-1119 26-309 (487)
112 KOG0294 WD40 repeat-containing 99.9 1.7E-22 3.6E-27 210.1 26.3 262 895-1178 3-283 (362)
113 PTZ00421 coronin; Provisional 99.9 6.6E-22 1.4E-26 235.2 35.3 232 888-1121 27-292 (493)
114 KOG0772 Uncharacterized conser 99.9 7.6E-23 1.6E-27 224.1 24.3 286 819-1119 159-487 (641)
115 KOG0973 Histone transcription 99.9 1.8E-22 3.9E-27 241.0 28.3 286 826-1123 12-359 (942)
116 KOG1446 Histone H3 (Lys4) meth 99.9 3.8E-21 8.1E-26 201.4 33.9 281 820-1119 7-303 (311)
117 KOG0647 mRNA export protein (c 99.9 4.1E-22 9E-27 206.0 25.0 268 823-1108 23-312 (347)
118 PTZ00420 coronin; Provisional 99.9 1.8E-21 3.8E-26 232.2 32.8 223 940-1178 50-295 (568)
119 KOG0283 WD40 repeat-containing 99.9 2.4E-22 5.1E-27 234.6 24.2 241 877-1119 260-576 (712)
120 KOG2096 WD40 repeat protein [G 99.9 9.9E-22 2.1E-26 203.8 26.1 295 819-1174 78-400 (420)
121 KOG0641 WD40 repeat protein [G 99.9 1.6E-20 3.4E-25 185.8 32.4 281 882-1176 31-349 (350)
122 KOG0772 Uncharacterized conser 99.9 4.7E-22 1E-26 218.0 23.9 280 877-1173 161-484 (641)
123 KOG1063 RNA polymerase II elon 99.9 3.3E-21 7.1E-26 218.6 31.1 363 775-1177 21-438 (764)
124 KOG1036 Mitotic spindle checkp 99.9 2.2E-21 4.8E-26 201.8 25.9 265 883-1165 13-293 (323)
125 KOG0264 Nucleosome remodeling 99.9 1.1E-21 2.5E-26 214.0 24.4 247 820-1077 117-405 (422)
126 KOG0647 mRNA export protein (c 99.9 3.2E-21 7E-26 199.5 25.8 261 886-1164 32-311 (347)
127 KOG4283 Transcription-coupled 99.9 2.3E-21 5E-26 199.1 24.2 280 880-1175 40-364 (397)
128 KOG1332 Vesicle coat complex C 99.9 4.7E-22 1E-26 199.7 18.2 252 821-1084 5-294 (299)
129 KOG0646 WD40 repeat protein [G 99.9 4.8E-21 1E-25 209.0 24.3 271 903-1177 18-308 (476)
130 KOG1036 Mitotic spindle checkp 99.9 1.1E-20 2.4E-25 196.7 25.5 260 769-1066 14-294 (323)
131 KOG0646 WD40 repeat protein [G 99.9 4.5E-21 9.6E-26 209.3 22.9 283 857-1157 13-330 (476)
132 KOG0264 Nucleosome remodeling 99.9 4.8E-21 1E-25 209.1 22.2 255 921-1178 122-406 (422)
133 KOG1274 WD40 repeat protein [G 99.9 2.7E-20 5.9E-25 217.7 28.8 286 824-1173 10-297 (933)
134 KOG0639 Transducin-like enhanc 99.9 7.3E-21 1.6E-25 207.4 19.7 278 824-1118 416-703 (705)
135 KOG0267 Microtubule severing p 99.9 4.7E-22 1E-26 226.1 9.7 232 823-1068 24-260 (825)
136 KOG0321 WD40 repeat-containing 99.9 2.3E-20 4.9E-25 210.0 22.9 271 893-1178 64-393 (720)
137 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1E-18 2.2E-23 198.4 36.1 264 893-1179 1-282 (300)
138 KOG1332 Vesicle coat complex C 99.9 1.4E-20 3E-25 189.3 18.0 245 920-1177 8-287 (299)
139 KOG1963 WD40 repeat protein [G 99.9 1E-18 2.2E-23 204.9 36.3 383 757-1177 5-539 (792)
140 KOG2096 WD40 repeat protein [G 99.9 1.1E-19 2.3E-24 188.9 23.9 283 763-1074 81-400 (420)
141 KOG0269 WD40 repeat-containing 99.9 1E-20 2.2E-25 217.0 17.9 283 769-1077 40-341 (839)
142 KOG0269 WD40 repeat-containing 99.8 1.3E-20 2.9E-25 216.1 18.3 279 879-1175 38-339 (839)
143 KOG2055 WD40 repeat protein [G 99.8 1.1E-19 2.4E-24 197.7 24.2 279 768-1076 213-512 (514)
144 KOG0650 WD40 repeat nucleolar 99.8 1.7E-19 3.6E-24 201.3 25.8 290 874-1173 391-732 (733)
145 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 3.5E-18 7.5E-23 194.1 37.5 282 851-1156 1-300 (300)
146 COG2319 FOG: WD40 repeat [Gene 99.8 4.1E-17 8.9E-22 192.5 48.1 365 762-1177 59-443 (466)
147 KOG2445 Nuclear pore complex c 99.8 3.1E-19 6.8E-24 185.2 25.5 256 920-1176 10-318 (361)
148 KOG2445 Nuclear pore complex c 99.8 6E-19 1.3E-23 183.1 26.2 254 823-1089 9-331 (361)
149 KOG2055 WD40 repeat protein [G 99.8 2.4E-19 5.2E-24 195.1 23.2 277 827-1119 213-512 (514)
150 KOG4283 Transcription-coupled 99.8 4.6E-19 9.9E-24 182.3 23.3 294 764-1075 39-364 (397)
151 KOG4378 Nuclear protein COP1 [ 99.8 2E-19 4.4E-24 196.2 21.4 286 782-1100 6-302 (673)
152 KOG1274 WD40 repeat protein [G 99.8 1.1E-18 2.4E-23 204.4 28.8 269 765-1070 10-294 (933)
153 KOG0267 Microtubule severing p 99.8 9.2E-21 2E-25 215.7 10.4 251 894-1168 5-260 (825)
154 KOG1273 WD40 repeat protein [G 99.8 1.4E-18 3.1E-23 180.4 24.3 282 877-1177 19-323 (405)
155 KOG1445 Tumor-specific antigen 99.8 1.4E-18 3.1E-23 193.9 24.4 136 819-965 71-214 (1012)
156 smart00800 uDENN Domain always 99.8 4.7E-20 1E-24 166.8 10.3 89 1-104 1-89 (89)
157 KOG0321 WD40 repeat-containing 99.8 9.5E-19 2.1E-23 197.0 22.7 308 849-1159 62-430 (720)
158 KOG0650 WD40 repeat nucleolar 99.8 1.7E-18 3.6E-23 193.4 23.2 314 758-1116 390-732 (733)
159 KOG4378 Nuclear protein COP1 [ 99.8 2.6E-18 5.7E-23 187.6 22.3 281 860-1158 11-305 (673)
160 KOG0270 WD40 repeat-containing 99.8 1.9E-18 4.2E-23 187.7 19.5 230 849-1078 190-451 (463)
161 KOG1034 Transcriptional repres 99.8 4.5E-18 9.7E-23 178.1 21.3 292 820-1119 31-383 (385)
162 KOG4328 WD40 protein [Function 99.8 5.3E-18 1.2E-22 184.6 22.2 289 763-1077 181-496 (498)
163 COG2319 FOG: WD40 repeat [Gene 99.8 8.2E-16 1.8E-20 181.4 43.1 326 822-1178 60-402 (466)
164 KOG4328 WD40 protein [Function 99.8 7.7E-18 1.7E-22 183.4 22.9 288 875-1177 178-496 (498)
165 KOG0270 WD40 repeat-containing 99.8 5.3E-18 1.2E-22 184.3 20.0 228 892-1120 191-450 (463)
166 KOG0302 Ribosome Assembly prot 99.8 1.7E-17 3.6E-22 176.6 23.1 243 820-1074 144-436 (440)
167 KOG1273 WD40 repeat protein [G 99.8 2.1E-17 4.7E-22 171.8 22.8 272 830-1120 26-323 (405)
168 KOG0322 G-protein beta subunit 99.8 4.1E-18 9E-23 173.3 16.8 283 875-1175 6-322 (323)
169 KOG1009 Chromatin assembly com 99.8 3.7E-17 8.1E-22 175.9 24.7 290 768-1079 13-375 (434)
170 KOG1445 Tumor-specific antigen 99.8 8.9E-17 1.9E-21 179.7 26.8 153 1008-1176 629-798 (1012)
171 KOG1538 Uncharacterized conser 99.8 1.7E-17 3.6E-22 186.4 20.9 267 770-1077 14-294 (1081)
172 KOG2919 Guanine nucleotide-bin 99.8 3.5E-17 7.7E-22 170.8 21.5 281 773-1067 54-361 (406)
173 KOG0302 Ribosome Assembly prot 99.8 3.4E-17 7.4E-22 174.3 20.3 250 764-1028 147-433 (440)
174 KOG2919 Guanine nucleotide-bin 99.8 1.2E-16 2.6E-21 166.9 22.8 263 888-1167 56-361 (406)
175 KOG1188 WD40 repeat protein [G 99.8 4.8E-17 1E-21 171.6 20.1 274 894-1176 41-346 (376)
176 KOG1034 Transcriptional repres 99.7 1.1E-16 2.4E-21 167.7 21.2 285 879-1177 34-384 (385)
177 KOG1517 Guanine nucleotide bin 99.7 3E-16 6.5E-21 185.2 24.8 282 886-1178 1069-1383(1387)
178 KOG1538 Uncharacterized conser 99.7 2.2E-16 4.7E-21 177.6 22.6 263 887-1176 18-293 (1081)
179 KOG0649 WD40 repeat protein [G 99.7 2.4E-15 5.2E-20 151.4 26.7 276 769-1073 11-313 (325)
180 KOG0307 Vesicle coat complex C 99.7 2.4E-17 5.1E-22 198.2 14.4 228 852-1079 81-330 (1049)
181 KOG1240 Protein kinase contain 99.7 4E-16 8.7E-21 187.2 24.2 343 816-1174 1037-1431(1431)
182 KOG0642 Cell-cycle nuclear pro 99.7 6.5E-17 1.4E-21 180.8 15.6 255 820-1090 287-572 (577)
183 KOG1009 Chromatin assembly com 99.7 1.6E-15 3.6E-20 163.4 23.9 302 827-1176 13-372 (434)
184 KOG0307 Vesicle coat complex C 99.7 8.4E-17 1.8E-21 193.5 15.2 254 760-1037 56-330 (1049)
185 KOG0649 WD40 repeat protein [G 99.7 2.1E-14 4.6E-19 144.7 27.8 261 848-1117 19-314 (325)
186 KOG1188 WD40 repeat protein [G 99.7 8.7E-16 1.9E-20 162.2 16.8 268 781-1077 41-347 (376)
187 KOG4227 WD40 repeat protein [G 99.7 4E-15 8.7E-20 158.3 21.7 292 760-1076 48-387 (609)
188 KOG4227 WD40 repeat protein [G 99.7 5.9E-15 1.3E-19 157.0 22.9 298 875-1175 48-386 (609)
189 KOG0303 Actin-binding protein 99.7 5.3E-15 1.1E-19 158.5 22.1 212 819-1078 73-296 (472)
190 KOG0642 Cell-cycle nuclear pro 99.7 5.7E-16 1.2E-20 173.3 13.9 260 763-1046 289-573 (577)
191 KOG1517 Guanine nucleotide bin 99.7 8.6E-15 1.9E-19 173.2 24.1 277 773-1077 1069-1382(1387)
192 KOG0644 Uncharacterized conser 99.7 2.2E-16 4.8E-21 182.2 10.6 274 762-1077 184-469 (1113)
193 KOG0322 G-protein beta subunit 99.7 2.8E-15 6.1E-20 152.9 17.2 279 764-1075 10-322 (323)
194 KOG1007 WD repeat protein TSSC 99.7 1.4E-14 2.9E-19 149.5 21.8 286 860-1176 39-361 (370)
195 KOG0644 Uncharacterized conser 99.6 3E-16 6.6E-21 181.0 9.6 275 819-1119 182-468 (1113)
196 KOG0303 Actin-binding protein 99.6 1.4E-14 2.9E-19 155.4 19.5 204 918-1122 76-297 (472)
197 KOG1587 Cytoplasmic dynein int 99.6 5.8E-14 1.3E-18 166.0 25.7 258 790-1077 224-517 (555)
198 KOG2110 Uncharacterized conser 99.6 6.7E-13 1.5E-17 142.1 30.3 223 849-1077 15-249 (391)
199 PF03456 uDENN: uDENN domain; 99.6 5E-17 1.1E-21 137.7 -1.4 65 34-104 1-65 (65)
200 KOG1963 WD40 repeat protein [G 99.6 4.5E-13 9.8E-18 157.9 30.5 320 772-1120 164-539 (792)
201 KOG1007 WD repeat protein TSSC 99.6 8.6E-14 1.9E-18 143.7 21.5 245 820-1077 56-362 (370)
202 KOG1587 Cytoplasmic dynein int 99.6 8.5E-14 1.8E-18 164.7 24.7 260 903-1178 222-518 (555)
203 KOG1524 WD40 repeat-containing 99.6 3.7E-14 8E-19 156.9 19.8 206 850-1072 74-282 (737)
204 PRK11028 6-phosphogluconolacto 99.6 8.6E-13 1.9E-17 152.4 30.5 265 897-1176 6-304 (330)
205 KOG1524 WD40 repeat-containing 99.6 6E-14 1.3E-18 155.2 19.2 255 882-1172 13-282 (737)
206 KOG1334 WD40 repeat protein [G 99.6 1.6E-14 3.5E-19 158.7 13.2 286 764-1077 138-467 (559)
207 KOG1334 WD40 repeat protein [G 99.6 2.8E-14 6.1E-19 156.9 13.9 288 875-1177 134-467 (559)
208 KOG0290 Conserved WD40 repeat- 99.5 5.8E-13 1.3E-17 137.8 21.9 238 924-1177 45-319 (364)
209 KOG1523 Actin-related protein 99.5 5.1E-13 1.1E-17 140.3 20.9 229 769-1025 11-269 (361)
210 KOG1310 WD40 repeat protein [G 99.5 2E-13 4.3E-18 151.6 17.7 211 759-998 41-307 (758)
211 PRK11028 6-phosphogluconolacto 99.5 2.4E-11 5.2E-16 140.4 36.2 264 854-1119 5-304 (330)
212 KOG1272 WD40-repeat-containing 99.5 4E-14 8.6E-19 154.8 10.0 264 888-1168 136-401 (545)
213 KOG2110 Uncharacterized conser 99.5 9.2E-12 2E-16 133.5 26.0 233 924-1177 6-249 (391)
214 KOG0290 Conserved WD40 repeat- 99.5 1.1E-12 2.3E-17 135.9 17.7 233 824-1066 93-356 (364)
215 KOG4497 Uncharacterized conser 99.5 5E-13 1.1E-17 140.2 15.2 353 747-1169 16-425 (447)
216 KOG0771 Prolactin regulatory e 99.5 1.8E-12 3.9E-17 141.5 19.8 194 968-1176 148-354 (398)
217 PRK01742 tolB translocation pr 99.5 2E-12 4.4E-17 154.2 21.9 233 902-1157 183-426 (429)
218 PF02239 Cytochrom_D1: Cytochr 99.5 8.1E-11 1.7E-15 136.1 33.8 295 790-1121 18-349 (369)
219 PRK01742 tolB translocation pr 99.5 3.2E-12 6.9E-17 152.6 22.4 228 790-1057 186-426 (429)
220 KOG2111 Uncharacterized conser 99.5 1.5E-10 3.3E-15 122.1 31.8 225 849-1079 15-259 (346)
221 KOG1240 Protein kinase contain 99.4 6.6E-12 1.4E-16 151.7 23.4 266 908-1177 1034-1335(1431)
222 PF09794 Avl9: Transport prote 99.4 8.7E-12 1.9E-16 140.7 22.2 314 6-381 2-377 (379)
223 KOG1523 Actin-related protein 99.4 9.3E-12 2E-16 131.0 20.6 234 821-1067 4-269 (361)
224 KOG2321 WD40 repeat protein [G 99.4 1.7E-11 3.8E-16 137.5 23.5 278 764-1078 47-345 (703)
225 PF02239 Cytochrom_D1: Cytochr 99.4 3E-10 6.6E-15 131.4 34.9 306 851-1178 5-349 (369)
226 TIGR03300 assembly_YfgL outer 99.4 3.4E-10 7.3E-15 133.4 32.8 296 850-1173 64-376 (377)
227 KOG2394 WD40 protein DMR-N9 [G 99.4 1.9E-11 4.2E-16 136.3 19.8 165 827-1016 219-384 (636)
228 KOG4497 Uncharacterized conser 99.4 2.1E-11 4.5E-16 128.2 18.7 303 845-1176 14-391 (447)
229 KOG1272 WD40-repeat-containing 99.4 9.9E-13 2.2E-17 144.0 9.2 262 771-1069 132-402 (545)
230 KOG0771 Prolactin regulatory e 99.4 5.6E-12 1.2E-16 137.7 14.6 193 884-1077 147-355 (398)
231 KOG2394 WD40 protein DMR-N9 [G 99.4 3.1E-11 6.7E-16 134.6 20.3 234 849-1101 133-384 (636)
232 KOG1310 WD40 repeat protein [G 99.4 4.5E-12 9.7E-17 141.0 13.5 162 916-1077 43-232 (758)
233 KOG3881 Uncharacterized conser 99.4 6.6E-11 1.4E-15 127.9 21.5 242 826-1078 54-322 (412)
234 KOG2315 Predicted translation 99.3 1.4E-09 3E-14 122.9 32.3 303 849-1177 44-391 (566)
235 KOG1409 Uncharacterized conser 99.3 2.2E-11 4.7E-16 129.2 16.6 336 819-1177 16-395 (404)
236 COG5354 Uncharacterized protei 99.3 7.7E-10 1.7E-14 123.3 29.3 311 768-1121 32-397 (561)
237 KOG2111 Uncharacterized conser 99.3 9.7E-10 2.1E-14 116.1 28.1 280 887-1174 11-320 (346)
238 KOG2321 WD40 repeat protein [G 99.3 2.2E-10 4.8E-15 128.8 24.1 273 825-1119 49-343 (703)
239 KOG2139 WD40 repeat protein [G 99.3 7.7E-10 1.7E-14 118.2 25.9 276 827-1119 98-431 (445)
240 PF03455 dDENN: dDENN domain; 99.3 1E-12 2.2E-17 112.6 3.1 65 364-432 1-68 (68)
241 KOG3881 Uncharacterized conser 99.3 1.5E-10 3.3E-15 125.1 20.0 236 924-1178 56-322 (412)
242 KOG2315 Predicted translation 99.3 2.6E-09 5.6E-14 120.8 29.9 308 770-1121 36-392 (566)
243 KOG1912 WD40 repeat protein [G 99.3 1.6E-09 3.4E-14 125.6 28.7 370 770-1177 17-552 (1062)
244 smart00801 dDENN Domain always 99.3 3.9E-12 8.6E-17 109.3 5.9 64 365-432 1-69 (69)
245 TIGR03300 assembly_YfgL outer 99.3 2.7E-09 5.9E-14 125.7 32.0 256 850-1116 104-376 (377)
246 COG5354 Uncharacterized protei 99.3 2.5E-09 5.4E-14 119.3 28.9 314 826-1177 31-396 (561)
247 KOG2314 Translation initiation 99.3 1.1E-09 2.4E-14 122.7 25.6 310 848-1177 219-574 (698)
248 PRK04922 tolB translocation pr 99.3 9.5E-10 2.1E-14 131.7 27.2 231 903-1156 184-432 (433)
249 PRK03629 tolB translocation pr 99.3 1.1E-09 2.3E-14 130.7 27.4 229 790-1056 181-427 (429)
250 KOG0974 WD-repeat protein WDR6 99.3 2.2E-10 4.8E-15 137.7 20.8 223 851-1078 61-290 (967)
251 PRK03629 tolB translocation pr 99.3 2.3E-09 5E-14 127.8 29.2 230 904-1156 180-427 (429)
252 KOG0974 WD-repeat protein WDR6 99.2 1.5E-09 3.2E-14 130.8 26.1 147 845-995 139-289 (967)
253 PRK04922 tolB translocation pr 99.2 2.7E-09 5.9E-14 127.7 25.4 219 820-1056 196-432 (433)
254 PRK02889 tolB translocation pr 99.2 1.3E-09 2.8E-14 130.0 22.6 217 763-1016 190-424 (427)
255 KOG2139 WD40 repeat protein [G 99.2 2.4E-09 5.3E-14 114.5 21.6 236 923-1167 98-366 (445)
256 PRK05137 tolB translocation pr 99.2 6.7E-09 1.5E-13 124.5 27.7 213 944-1178 182-414 (435)
257 COG4946 Uncharacterized protei 99.2 8.7E-08 1.9E-12 105.8 33.3 252 922-1177 358-655 (668)
258 PRK02889 tolB translocation pr 99.2 3E-09 6.4E-14 127.0 23.5 232 903-1157 176-425 (427)
259 KOG0280 Uncharacterized conser 99.1 8.3E-09 1.8E-13 107.9 22.5 264 901-1178 44-335 (339)
260 PF10282 Lactonase: Lactonase, 99.1 2.8E-07 6E-12 106.9 37.9 269 896-1176 2-322 (345)
261 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.8E-07 4E-12 105.8 35.1 257 903-1179 27-333 (352)
262 PRK05137 tolB translocation pr 99.1 1.7E-08 3.6E-13 121.1 28.5 211 903-1120 182-413 (435)
263 PF10282 Lactonase: Lactonase, 99.1 6.1E-07 1.3E-11 104.0 40.5 266 854-1119 2-322 (345)
264 COG4946 Uncharacterized protei 99.1 2.7E-07 5.9E-12 102.0 34.7 371 757-1179 67-480 (668)
265 KOG0309 Conserved WD40 repeat- 99.1 5.5E-10 1.2E-14 128.4 13.2 270 738-1035 24-340 (1081)
266 PF08662 eIF2A: Eukaryotic tra 99.1 6.5E-09 1.4E-13 109.4 19.0 148 968-1121 9-181 (194)
267 KOG2041 WD40 repeat protein [G 99.1 1.7E-08 3.8E-13 115.7 23.2 273 828-1119 15-337 (1189)
268 PF08662 eIF2A: Eukaryotic tra 99.1 8.1E-09 1.8E-13 108.7 19.3 129 1028-1177 39-180 (194)
269 KOG4190 Uncharacterized conser 99.0 6.1E-10 1.3E-14 123.7 10.0 281 819-1115 727-1032(1034)
270 KOG4547 WD40 repeat-containing 99.0 3.1E-08 6.6E-13 113.3 23.1 183 849-1035 3-221 (541)
271 KOG2041 WD40 repeat protein [G 99.0 5.1E-07 1.1E-11 104.0 32.7 389 769-1178 15-534 (1189)
272 KOG4547 WD40 repeat-containing 99.0 5.4E-08 1.2E-12 111.3 24.8 185 891-1077 3-221 (541)
273 KOG1409 Uncharacterized conser 99.0 1.7E-08 3.7E-13 107.7 19.0 240 763-1034 19-270 (404)
274 KOG1354 Serine/threonine prote 99.0 2.6E-08 5.5E-13 106.1 19.7 239 827-1078 25-361 (433)
275 KOG1064 RAVE (regulator of V-A 99.0 2.4E-09 5.2E-14 133.8 13.9 188 922-1121 2207-2400(2439)
276 KOG0280 Uncharacterized conser 99.0 4.3E-08 9.4E-13 102.7 20.7 239 826-1076 68-333 (339)
277 PRK11138 outer membrane biogen 99.0 3.5E-07 7.6E-12 108.3 31.2 299 851-1175 69-393 (394)
278 KOG1064 RAVE (regulator of V-A 99.0 3.6E-09 7.7E-14 132.4 14.3 195 824-1043 2205-2407(2439)
279 TIGR02800 propeller_TolB tol-p 99.0 1.2E-07 2.5E-12 113.6 27.1 209 903-1118 170-396 (417)
280 KOG4190 Uncharacterized conser 99.0 3.3E-09 7.1E-14 118.1 11.8 281 876-1172 728-1032(1034)
281 PRK00178 tolB translocation pr 98.9 1.1E-07 2.4E-12 114.0 25.0 218 760-1016 190-427 (430)
282 PRK00178 tolB translocation pr 98.9 2.1E-07 4.5E-12 111.7 26.7 219 820-1056 191-427 (430)
283 PRK11138 outer membrane biogen 98.9 7.3E-07 1.6E-11 105.6 30.7 258 850-1118 119-393 (394)
284 KOG0309 Conserved WD40 repeat- 98.9 7.1E-09 1.5E-13 119.5 12.7 220 827-1059 24-258 (1081)
285 KOG1912 WD40 repeat protein [G 98.9 1.8E-07 3.9E-12 109.0 24.1 326 850-1178 25-457 (1062)
286 PRK04792 tolB translocation pr 98.9 2.2E-07 4.7E-12 111.5 25.8 218 821-1056 211-446 (448)
287 TIGR02800 propeller_TolB tol-p 98.9 2.4E-07 5.3E-12 110.8 26.3 217 820-1054 182-416 (417)
288 KOG2314 Translation initiation 98.9 4.2E-07 9.1E-12 102.5 25.1 309 773-1120 215-574 (698)
289 TIGR02658 TTQ_MADH_Hv methylam 98.9 8.7E-06 1.9E-10 92.4 35.2 230 849-1087 55-338 (352)
290 PRK04792 tolB translocation pr 98.9 6.9E-07 1.5E-11 107.1 27.7 230 904-1156 199-446 (448)
291 PF13360 PQQ_2: PQQ-like domai 98.9 1.6E-06 3.5E-11 95.0 28.5 213 901-1121 1-232 (238)
292 KOG1354 Serine/threonine prote 98.9 7E-08 1.5E-12 102.9 16.5 229 889-1121 33-361 (433)
293 PRK01029 tolB translocation pr 98.8 4.5E-07 9.9E-12 107.8 25.5 219 764-1016 180-424 (428)
294 PF04762 IKI3: IKI3 family; I 98.8 2.2E-05 4.9E-10 100.8 42.3 280 767-1077 74-457 (928)
295 PF13360 PQQ_2: PQQ-like domai 98.8 1E-06 2.3E-11 96.5 25.4 214 860-1079 2-233 (238)
296 PF04762 IKI3: IKI3 family; I 98.8 1.7E-05 3.7E-10 102.0 39.7 268 848-1120 218-565 (928)
297 PLN02919 haloacid dehalogenase 98.8 1.7E-06 3.7E-11 113.1 31.3 245 928-1178 572-890 (1057)
298 KOG4649 PQQ (pyrrolo-quinoline 98.7 1.9E-05 4.2E-10 81.8 28.7 310 851-1178 23-353 (354)
299 PRK01029 tolB translocation pr 98.7 3.1E-06 6.6E-11 100.8 26.8 221 823-1058 180-426 (428)
300 COG2706 3-carboxymuconate cycl 98.7 3.1E-05 6.8E-10 84.6 31.4 264 902-1176 15-321 (346)
301 COG2706 3-carboxymuconate cycl 98.6 0.00013 2.9E-09 79.8 33.9 261 860-1121 15-323 (346)
302 KOG4532 WD40-like repeat conta 98.6 3.3E-06 7.1E-11 87.6 20.2 227 858-1084 49-290 (344)
303 KOG3823 Uncharacterized conser 98.6 1.6E-06 3.5E-11 95.1 18.6 345 34-431 24-430 (630)
304 PF15492 Nbas_N: Neuroblastoma 98.6 2.7E-05 5.9E-10 82.6 27.0 222 930-1177 4-260 (282)
305 PLN02919 haloacid dehalogenase 98.6 3.5E-05 7.6E-10 101.0 33.9 226 850-1079 579-891 (1057)
306 KOG4714 Nucleoporin [Nuclear s 98.5 5.4E-07 1.2E-11 93.0 11.4 224 893-1117 47-316 (319)
307 KOG4532 WD40-like repeat conta 98.5 1.3E-05 2.9E-10 83.3 20.9 227 849-1077 82-332 (344)
308 KOG4714 Nucleoporin [Nuclear s 98.5 5.9E-07 1.3E-11 92.7 10.1 183 849-1032 99-316 (319)
309 PF15492 Nbas_N: Neuroblastoma 98.5 6.5E-05 1.4E-09 79.8 25.6 225 848-1087 6-267 (282)
310 KOG0882 Cyclophilin-related pe 98.5 4.6E-06 1E-10 92.2 16.7 276 826-1116 8-369 (558)
311 KOG1275 PAB-dependent poly(A) 98.4 3.5E-06 7.7E-11 100.4 15.9 182 933-1117 146-340 (1118)
312 KOG3914 WD repeat protein WDR4 98.4 3.4E-06 7.4E-11 92.7 13.9 152 890-1043 71-232 (390)
313 PRK04043 tolB translocation pr 98.4 7.4E-05 1.6E-09 88.5 25.4 186 770-995 189-401 (419)
314 cd00216 PQQ_DH Dehydrogenases 98.4 0.00029 6.3E-09 85.6 30.8 262 851-1121 61-426 (488)
315 PRK04043 tolB translocation pr 98.3 0.00028 6.2E-09 83.5 28.6 209 944-1177 169-401 (419)
316 KOG2695 WD40 repeat protein [G 98.3 1.7E-06 3.7E-11 92.7 8.5 150 891-1044 223-386 (425)
317 KOG2066 Vacuolar assembly/sort 98.3 3.1E-05 6.7E-10 91.9 19.6 178 888-1077 44-234 (846)
318 KOG1275 PAB-dependent poly(A) 98.3 1.2E-05 2.6E-10 96.1 16.0 184 975-1174 146-340 (1118)
319 KOG3914 WD repeat protein WDR4 98.3 6.5E-06 1.4E-10 90.5 12.5 152 966-1122 64-226 (390)
320 PF00400 WD40: WD domain, G-be 98.3 1.8E-06 3.9E-11 64.9 5.8 39 1136-1174 1-39 (39)
321 cd00216 PQQ_DH Dehydrogenases 98.3 0.00053 1.1E-08 83.4 30.3 189 893-1081 61-324 (488)
322 COG5170 CDC55 Serine/threonine 98.3 1.2E-05 2.6E-10 84.9 13.2 213 964-1178 26-311 (460)
323 PF08450 SGL: SMP-30/Gluconola 98.2 0.002 4.3E-08 71.0 31.6 215 928-1165 4-244 (246)
324 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.002 4.4E-08 67.2 28.4 257 851-1119 63-351 (354)
325 COG5170 CDC55 Serine/threonine 98.2 2.8E-05 6.2E-10 82.1 15.2 239 827-1077 26-368 (460)
326 KOG2695 WD40 repeat protein [G 98.2 3.7E-06 8.1E-11 90.2 8.0 138 938-1078 228-378 (425)
327 KOG3617 WD40 and TPR repeat-co 98.2 9E-05 2E-09 87.6 19.4 395 738-1178 26-587 (1416)
328 PF08450 SGL: SMP-30/Gluconola 98.2 0.0024 5.2E-08 70.3 30.4 208 850-1065 11-244 (246)
329 KOG2114 Vacuolar assembly/sort 98.1 0.00031 6.7E-09 84.3 23.3 191 885-1077 27-244 (933)
330 KOG1920 IkappaB kinase complex 98.1 0.0002 4.2E-09 89.0 21.8 238 923-1177 68-323 (1265)
331 KOG0882 Cyclophilin-related pe 98.1 5.9E-05 1.3E-09 83.7 14.4 244 770-1042 10-313 (558)
332 PF00400 WD40: WD domain, G-be 98.0 1.5E-05 3.2E-10 59.9 6.5 39 1036-1074 1-39 (39)
333 KOG1832 HIV-1 Vpr-binding prot 98.0 2.4E-06 5.1E-11 100.9 3.0 215 819-1063 1093-1318(1516)
334 KOG2066 Vacuolar assembly/sort 98.0 0.00039 8.4E-09 82.9 21.0 178 925-1120 41-234 (846)
335 PF07433 DUF1513: Protein of u 98.0 0.0027 5.9E-08 69.9 26.1 189 888-1078 11-249 (305)
336 PF08616 SPA: Stabilization of 98.0 2.8E-05 6.1E-10 73.3 8.7 104 206-311 3-112 (113)
337 KOG1832 HIV-1 Vpr-binding prot 98.0 4.3E-06 9.3E-11 98.8 3.7 195 765-1003 1098-1300(1516)
338 PF07433 DUF1513: Protein of u 98.0 0.0049 1.1E-07 67.9 27.0 213 850-1070 16-279 (305)
339 KOG3621 WD40 repeat-containing 98.0 0.00066 1.4E-08 80.1 21.0 140 886-1025 38-189 (726)
340 KOG2114 Vacuolar assembly/sort 98.0 0.00068 1.5E-08 81.4 21.3 195 849-1047 33-257 (933)
341 KOG1645 RING-finger-containing 97.9 0.00039 8.5E-09 76.6 17.1 249 905-1177 175-462 (463)
342 PF06433 Me-amine-dh_H: Methyl 97.9 0.031 6.6E-07 62.5 32.0 257 903-1179 17-323 (342)
343 KOG1920 IkappaB kinase complex 97.9 0.0046 1E-07 77.3 27.8 269 827-1118 68-364 (1265)
344 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.9 0.017 3.6E-07 70.7 32.6 187 851-1039 69-338 (527)
345 PF04841 Vps16_N: Vps16, N-ter 97.8 0.012 2.5E-07 69.8 29.0 166 904-1077 62-247 (410)
346 KOG3617 WD40 and TPR repeat-co 97.8 0.00083 1.8E-08 79.8 18.1 300 847-1164 23-373 (1416)
347 KOG1645 RING-finger-containing 97.8 0.00075 1.6E-08 74.5 16.0 239 820-1077 186-462 (463)
348 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.043 9.2E-07 67.2 30.6 186 893-1080 69-337 (527)
349 KOG2080 Uncharacterized conser 97.6 5.9E-05 1.3E-09 88.9 5.3 133 188-321 35-167 (1295)
350 PF04053 Coatomer_WDAD: Coatom 97.6 0.016 3.5E-07 68.6 25.4 229 819-1077 24-263 (443)
351 PF11768 DUF3312: Protein of u 97.6 0.028 6E-07 66.1 26.3 112 1048-1177 207-330 (545)
352 PF14583 Pectate_lyase22: Olig 97.6 0.059 1.3E-06 61.4 28.0 278 888-1175 42-380 (386)
353 PF06433 Me-amine-dh_H: Methyl 97.5 0.21 4.6E-06 55.9 31.4 234 849-1085 45-329 (342)
354 PRK02888 nitrous-oxide reducta 97.5 0.0067 1.5E-07 72.8 20.9 224 891-1120 139-405 (635)
355 PF03178 CPSF_A: CPSF A subuni 97.5 0.029 6.2E-07 64.5 25.7 219 944-1172 2-261 (321)
356 PHA02713 hypothetical protein; 97.4 0.0076 1.7E-07 74.4 20.6 217 945-1179 273-536 (557)
357 PF08596 Lgl_C: Lethal giant l 97.4 0.077 1.7E-06 62.1 27.3 265 829-1118 3-334 (395)
358 PF00930 DPPIV_N: Dipeptidyl p 97.4 0.14 2.9E-06 59.8 29.5 287 777-1109 1-347 (353)
359 PF04841 Vps16_N: Vps16, N-ter 97.4 0.072 1.6E-06 63.1 27.3 116 964-1097 216-332 (410)
360 PF04053 Coatomer_WDAD: Coatom 97.4 0.036 7.8E-07 65.7 24.4 224 922-1176 31-262 (443)
361 KOG3621 WD40 repeat-containing 97.3 0.00089 1.9E-08 79.0 10.1 122 1046-1177 33-155 (726)
362 PHA02713 hypothetical protein; 97.3 0.016 3.4E-07 71.7 21.7 217 904-1121 273-535 (557)
363 PRK02888 nitrous-oxide reducta 97.3 0.09 2E-06 63.4 26.5 204 848-1065 201-450 (635)
364 PF14583 Pectate_lyase22: Olig 97.3 0.57 1.2E-05 53.6 31.3 288 819-1118 22-380 (386)
365 COG5276 Uncharacterized conser 97.1 0.53 1.1E-05 50.8 30.8 270 888-1176 91-369 (370)
366 KOG4441 Proteins containing BT 97.1 0.026 5.6E-07 69.5 20.9 217 944-1178 301-548 (571)
367 KOG1897 Damage-specific DNA bi 97.1 1.3 2.9E-05 55.2 35.5 318 826-1173 529-895 (1096)
368 PF00780 CNH: CNH domain; Int 97.1 0.2 4.4E-06 56.0 26.6 220 890-1121 4-257 (275)
369 KOG4441 Proteins containing BT 97.1 0.03 6.5E-07 69.0 21.2 213 903-1119 301-546 (571)
370 PF02897 Peptidase_S9_N: Proly 97.1 0.4 8.7E-06 57.3 30.6 235 773-1039 128-409 (414)
371 PF00780 CNH: CNH domain; Int 97.1 0.26 5.6E-06 55.2 27.3 225 778-1044 5-265 (275)
372 PF00930 DPPIV_N: Dipeptidyl p 97.1 0.12 2.6E-06 60.2 24.9 258 890-1164 1-345 (353)
373 KOG2432 Uncharacterized conser 97.1 0.0043 9.4E-08 69.3 11.4 186 91-288 106-318 (565)
374 PF03178 CPSF_A: CPSF A subuni 97.0 0.35 7.6E-06 55.5 28.0 210 903-1116 2-262 (321)
375 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.033 7.1E-07 51.7 15.2 102 830-948 2-110 (111)
376 PF08553 VID27: VID27 cytoplas 97.0 0.015 3.3E-07 72.4 16.6 131 984-1119 502-647 (794)
377 PF11768 DUF3312: Protein of u 96.9 1.4 3.1E-05 52.3 31.5 75 1044-1121 257-331 (545)
378 COG3391 Uncharacterized conser 96.9 1.4 3E-05 51.9 31.4 253 905-1177 13-284 (381)
379 KOG1897 Damage-specific DNA bi 96.9 2.2 4.8E-05 53.4 34.2 223 945-1172 751-1000(1096)
380 KOG1008 Uncharacterized conser 96.8 0.00048 1E-08 80.0 1.9 196 965-1176 57-275 (783)
381 PF08596 Lgl_C: Lethal giant l 96.7 0.29 6.2E-06 57.4 23.9 221 770-1005 3-301 (395)
382 PF14655 RAB3GAP2_N: Rab3 GTPa 96.7 0.62 1.3E-05 54.5 26.1 80 964-1043 307-407 (415)
383 PF02897 Peptidase_S9_N: Proly 96.7 2.3 4.9E-05 50.8 32.2 229 888-1121 130-406 (414)
384 KOG1008 Uncharacterized conser 96.7 0.00053 1.2E-08 79.7 0.5 183 892-1077 69-276 (783)
385 PF05096 Glu_cyclase_2: Glutam 96.6 1.3 2.8E-05 48.2 25.9 173 890-1065 53-249 (264)
386 smart00320 WD40 WD40 repeats. 96.6 0.0037 8.1E-08 45.1 4.9 38 1137-1174 3-40 (40)
387 KOG2395 Protein involved in va 96.5 0.077 1.7E-06 61.2 16.1 140 1018-1175 348-499 (644)
388 COG3391 Uncharacterized conser 96.5 1.9 4.1E-05 50.8 28.6 189 888-1078 80-285 (381)
389 PF08553 VID27: VID27 cytoplas 96.4 0.05 1.1E-06 68.0 15.6 142 849-993 491-646 (794)
390 PF06977 SdiA-regulated: SdiA- 96.4 2 4.4E-05 46.9 26.6 194 877-1073 15-247 (248)
391 COG0823 TolB Periplasmic compo 96.4 0.12 2.6E-06 61.1 17.8 169 946-1119 175-358 (425)
392 PF05694 SBP56: 56kDa selenium 96.4 2 4.4E-05 49.7 26.4 217 892-1108 86-392 (461)
393 COG3386 Gluconolactonase [Carb 96.4 1 2.2E-05 50.8 24.3 211 849-1065 34-274 (307)
394 smart00320 WD40 WD40 repeats. 96.3 0.011 2.3E-07 42.5 5.6 39 1036-1074 2-40 (40)
395 COG5276 Uncharacterized conser 96.2 2.5 5.4E-05 45.9 29.4 259 851-1118 96-368 (370)
396 PHA03098 kelch-like protein; P 96.2 0.26 5.6E-06 61.0 20.4 185 933-1120 294-512 (534)
397 KOG2079 Vacuolar assembly/sort 96.2 0.058 1.2E-06 67.1 13.8 98 934-1033 99-202 (1206)
398 PF14783 BBS2_Mid: Ciliary BBS 96.1 0.34 7.4E-06 45.1 15.3 99 967-1071 2-109 (111)
399 TIGR03074 PQQ_membr_DH membran 96.1 0.83 1.8E-05 58.0 24.0 110 893-1003 194-353 (764)
400 COG3386 Gluconolactonase [Carb 96.1 1.2 2.5E-05 50.4 22.8 127 888-1016 117-264 (307)
401 PF06977 SdiA-regulated: SdiA- 96.1 1.9 4.1E-05 47.1 23.6 194 821-1030 15-246 (248)
402 TIGR03074 PQQ_membr_DH membran 95.9 1.6 3.6E-05 55.4 25.6 109 934-1043 194-353 (764)
403 KOG2079 Vacuolar assembly/sort 95.9 0.06 1.3E-06 67.0 12.1 98 851-951 99-202 (1206)
404 PF05096 Glu_cyclase_2: Glutam 95.9 0.55 1.2E-05 51.0 18.0 189 762-984 36-250 (264)
405 COG0823 TolB Periplasmic compo 95.8 0.45 9.8E-06 56.3 19.0 181 769-984 193-389 (425)
406 KOG2395 Protein involved in va 95.8 0.1 2.2E-06 60.3 12.8 138 937-1076 349-500 (644)
407 KOG2444 WD40 repeat protein [G 95.8 0.012 2.6E-07 61.1 4.8 138 937-1077 33-178 (238)
408 PHA03098 kelch-like protein; P 95.6 0.24 5.2E-06 61.3 16.8 188 850-1037 294-514 (534)
409 KOG2444 WD40 repeat protein [G 95.6 0.022 4.9E-07 59.1 6.2 139 854-994 33-177 (238)
410 PHA02790 Kelch-like protein; P 95.6 0.32 7E-06 59.1 17.0 184 850-1036 271-472 (480)
411 COG3490 Uncharacterized protei 95.5 2 4.3E-05 46.4 20.1 219 851-1075 80-347 (366)
412 KOG4640 Anaphase-promoting com 95.5 0.047 1E-06 64.3 8.8 72 1007-1079 21-95 (665)
413 KOG4640 Anaphase-promoting com 95.4 0.076 1.6E-06 62.6 10.3 92 924-1016 21-115 (665)
414 PRK13616 lipoprotein LpqB; Pro 95.2 1.2 2.5E-05 55.2 20.3 182 924-1113 350-562 (591)
415 PHA02790 Kelch-like protein; P 95.2 0.54 1.2E-05 57.2 17.3 171 945-1119 288-470 (480)
416 KOG4499 Ca2+-binding protein R 95.2 1.9 4.2E-05 45.2 18.1 128 888-1017 115-264 (310)
417 PRK10115 protease 2; Provision 95.1 14 0.0003 47.0 31.8 233 769-1037 127-397 (686)
418 PRK13616 lipoprotein LpqB; Pro 94.9 1.2 2.7E-05 55.0 19.4 182 829-1030 351-564 (591)
419 PF14655 RAB3GAP2_N: Rab3 GTPa 94.9 11 0.00023 44.5 27.1 88 886-974 6-118 (415)
420 PRK13684 Ycf48-like protein; P 94.7 10 0.00023 43.6 29.3 151 964-1118 172-330 (334)
421 COG3204 Uncharacterized protei 94.7 4.1 8.9E-05 44.6 19.8 161 961-1121 82-265 (316)
422 PF14870 PSII_BNR: Photosynthe 94.7 9.6 0.00021 42.9 33.0 175 895-1073 116-301 (302)
423 PRK10115 protease 2; Provision 94.4 20 0.00044 45.7 30.0 197 772-997 175-397 (686)
424 PF05694 SBP56: 56kDa selenium 94.4 8.3 0.00018 44.8 22.5 146 849-996 139-344 (461)
425 PLN02153 epithiospecifier prot 94.2 10 0.00022 43.9 24.2 185 933-1121 32-286 (341)
426 PLN02153 epithiospecifier prot 94.1 6.3 0.00014 45.6 22.0 186 850-1037 32-287 (341)
427 PF14870 PSII_BNR: Photosynthe 94.0 13 0.00028 41.9 33.0 225 887-1116 65-301 (302)
428 COG1520 FOG: WD40-like repeat 93.9 13 0.00029 43.5 24.5 186 893-1079 68-271 (370)
429 COG3490 Uncharacterized protei 93.6 6.8 0.00015 42.5 18.5 182 848-1032 122-346 (366)
430 PF14727 PHTB1_N: PTHB1 N-term 93.1 23 0.00049 41.8 31.6 145 849-994 35-204 (418)
431 COG3204 Uncharacterized protei 93.1 11 0.00024 41.4 19.5 180 863-1043 65-271 (316)
432 KOG1916 Nuclear protein, conta 93.0 0.015 3.3E-07 70.3 -2.2 208 822-1076 127-374 (1283)
433 KOG4499 Ca2+-binding protein R 92.9 14 0.00031 39.0 19.6 202 893-1102 27-264 (310)
434 PF12894 Apc4_WD40: Anaphase-p 92.6 0.33 7.1E-06 37.9 5.4 31 1146-1176 11-41 (47)
435 COG1520 FOG: WD40-like repeat 92.3 27 0.00059 40.8 29.9 152 893-1045 111-279 (370)
436 KOG2280 Vacuolar assembly/sort 92.2 4.7 0.0001 49.2 16.9 170 903-1077 64-247 (829)
437 PF07792 Afi1: Docking domain 92.0 0.25 5.5E-06 48.8 5.2 49 5-71 2-50 (145)
438 PLN02193 nitrile-specifier pro 91.8 27 0.00058 42.4 23.6 186 933-1121 175-412 (470)
439 COG3823 Glutamine cyclotransfe 91.6 2.9 6.3E-05 43.2 12.2 121 860-983 110-247 (262)
440 TIGR03548 mutarot_permut cycli 91.5 21 0.00046 40.9 21.4 110 889-998 69-198 (323)
441 PF12894 Apc4_WD40: Anaphase-p 91.5 0.58 1.3E-05 36.5 5.7 35 963-998 10-44 (47)
442 PRK13684 Ycf48-like protein; P 91.5 31 0.00068 39.7 30.9 150 923-1075 172-330 (334)
443 TIGR03547 muta_rot_YjhT mutatr 91.4 18 0.0004 41.8 21.0 57 929-985 59-128 (346)
444 TIGR03547 muta_rot_YjhT mutatr 91.4 17 0.00038 42.0 20.8 94 850-943 17-128 (346)
445 PF15390 DUF4613: Domain of un 91.4 9 0.00019 45.8 17.5 146 924-1077 20-187 (671)
446 PLN02193 nitrile-specifier pro 91.3 40 0.00088 40.9 24.4 185 891-1077 174-411 (470)
447 TIGR03548 mutarot_permut cycli 91.2 22 0.00048 40.7 21.2 134 975-1110 72-233 (323)
448 KOG2280 Vacuolar assembly/sort 91.2 7 0.00015 47.8 16.7 54 964-1017 216-270 (829)
449 COG3823 Glutamine cyclotransfe 90.7 7.3 0.00016 40.4 13.9 171 891-1064 54-247 (262)
450 PRK14131 N-acetylneuraminic ac 90.3 19 0.00041 42.3 19.9 94 850-943 38-149 (376)
451 PF10647 Gmad1: Lipoprotein Lp 90.0 18 0.00039 39.8 18.1 151 1008-1168 25-187 (253)
452 PRK14131 N-acetylneuraminic ac 89.8 16 0.00034 42.9 18.7 55 931-985 82-149 (376)
453 PF15390 DUF4613: Domain of un 89.0 6 0.00013 47.2 13.5 148 1007-1175 20-185 (671)
454 KOG3630 Nuclear pore complex, 88.8 4.5 9.6E-05 51.5 12.9 113 965-1077 101-229 (1405)
455 COG3292 Predicted periplasmic 88.7 62 0.0013 38.9 21.2 302 851-1176 175-491 (671)
456 COG5167 VID27 Protein involved 88.5 12 0.00027 43.6 15.2 143 849-994 477-632 (776)
457 COG3292 Predicted periplasmic 88.2 21 0.00046 42.6 17.1 259 893-1171 175-442 (671)
458 PF12234 Rav1p_C: RAVE protein 87.3 13 0.00027 46.0 15.5 102 890-993 38-155 (631)
459 TIGR03118 PEPCTERM_chp_1 conse 86.8 57 0.0012 36.3 20.8 196 966-1178 24-281 (336)
460 PF10168 Nup88: Nuclear pore c 86.6 80 0.0017 40.3 22.6 73 925-997 86-182 (717)
461 COG5167 VID27 Protein involved 86.0 6.5 0.00014 45.8 11.3 139 1018-1175 482-631 (776)
462 PF10647 Gmad1: Lipoprotein Lp 85.5 62 0.0014 35.6 21.4 142 925-1069 25-188 (253)
463 PF10313 DUF2415: Uncharacteri 85.2 2.4 5.1E-05 32.3 5.0 32 1147-1178 1-35 (43)
464 PF09804 DUF2347: Uncharacteri 85.1 19 0.00042 40.0 14.4 34 205-239 162-195 (280)
465 PF08728 CRT10: CRT10; InterP 85.1 23 0.0005 44.3 16.2 147 884-1033 41-245 (717)
466 KOG1916 Nuclear protein, conta 84.8 0.51 1.1E-05 57.9 2.1 160 769-951 184-373 (1283)
467 KOG3616 Selective LIM binding 84.8 15 0.00033 44.6 13.8 68 1044-1117 335-402 (1636)
468 PF10168 Nup88: Nuclear pore c 84.8 23 0.00049 45.0 16.5 28 963-990 83-110 (717)
469 TIGR03118 PEPCTERM_chp_1 conse 84.3 74 0.0016 35.5 23.0 202 830-1044 25-289 (336)
470 KOG2063 Vacuolar assembly/sort 84.2 19 0.00041 46.1 15.3 228 888-1121 21-270 (877)
471 PRK05560 DNA gyrase subunit A; 84.1 1.5E+02 0.0032 38.7 28.4 187 932-1119 546-772 (805)
472 PF12234 Rav1p_C: RAVE protein 83.6 21 0.00046 44.1 15.1 118 1047-1174 30-154 (631)
473 PF08801 Nucleoporin_N: Nup133 82.0 37 0.0008 40.6 16.5 165 888-1077 32-220 (422)
474 KOG3630 Nuclear pore complex, 81.9 15 0.00031 47.2 12.7 128 889-1017 108-254 (1405)
475 KOG1900 Nuclear pore complex, 81.8 8.9 0.00019 49.9 11.2 151 1023-1177 96-273 (1311)
476 PF07569 Hira: TUP1-like enhan 81.0 9.7 0.00021 40.9 9.8 69 1008-1077 14-96 (219)
477 PF10433 MMS1_N: Mono-function 80.8 1.5E+02 0.0032 36.4 24.1 221 891-1121 220-478 (504)
478 smart00036 CNH Domain found in 80.0 1.1E+02 0.0024 34.6 27.7 235 775-1044 8-280 (302)
479 PF08728 CRT10: CRT10; InterP 79.9 34 0.00073 42.9 15.0 107 1057-1175 113-245 (717)
480 TIGR01063 gyrA DNA gyrase, A s 79.7 2E+02 0.0044 37.3 27.1 227 849-1077 494-770 (800)
481 KOG2377 Uncharacterized conser 79.3 54 0.0012 38.1 15.0 137 927-1064 26-171 (657)
482 KOG2247 WD40 repeat-containing 78.8 0.25 5.3E-06 56.8 -3.2 141 888-1030 41-184 (615)
483 PF07569 Hira: TUP1-like enhan 78.1 10 0.00022 40.8 8.9 79 1092-1176 13-95 (219)
484 PF07995 GSDH: Glucose / Sorbo 76.9 1.5E+02 0.0032 34.2 22.3 54 1018-1071 273-330 (331)
485 COG4257 Vgb Streptogramin lyas 75.7 1.3E+02 0.0028 33.0 17.6 143 965-1119 62-218 (353)
486 PF07995 GSDH: Glucose / Sorbo 75.7 1.6E+02 0.0034 33.9 23.8 223 887-1114 7-330 (331)
487 PF10313 DUF2415: Uncharacteri 75.1 11 0.00024 28.8 5.6 32 965-996 1-35 (43)
488 PF12657 TFIIIC_delta: Transcr 75.0 17 0.00037 37.4 9.3 35 828-869 86-121 (173)
489 KOG1983 Tomosyn and related SN 75.0 86 0.0019 41.6 17.7 225 882-1123 36-268 (993)
490 PF07250 Glyoxal_oxid_N: Glyox 74.4 83 0.0018 34.3 14.6 141 1028-1178 48-199 (243)
491 TIGR02604 Piru_Ver_Nterm putat 74.1 80 0.0017 36.9 15.8 101 965-1065 14-142 (367)
492 PF03022 MRJP: Major royal jel 73.9 1.6E+02 0.0034 33.1 23.8 168 987-1164 35-253 (287)
493 KOG1898 Splicing factor 3b, su 72.7 3E+02 0.0066 35.8 34.9 132 1025-1175 911-1047(1205)
494 PRK05560 DNA gyrase subunit A; 72.2 3.1E+02 0.0067 35.7 28.4 227 849-1077 496-773 (805)
495 PF08801 Nucleoporin_N: Nup133 72.0 70 0.0015 38.2 15.0 32 964-995 189-220 (422)
496 KOG1900 Nuclear pore complex, 72.0 33 0.00073 45.0 12.3 135 900-1035 96-273 (1311)
497 KOG1983 Tomosyn and related SN 71.3 46 0.001 44.1 14.0 69 1005-1078 197-266 (993)
498 PF12768 Rax2: Cortical protei 70.8 66 0.0014 35.9 13.1 111 943-1054 15-144 (281)
499 KOG2247 WD40 repeat-containing 70.0 3.5 7.7E-05 47.8 3.0 230 772-1037 38-283 (615)
500 PF14727 PHTB1_N: PTHB1 N-term 69.7 2.4E+02 0.0052 33.5 29.1 178 893-1077 145-361 (418)
No 1
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=100.00 E-value=1.7e-82 Score=723.64 Aligned_cols=608 Identities=19% Similarity=0.205 Sum_probs=497.0
Q ss_pred CCcceEEEEEEccCCCccccCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCcccCCCceEEeecCCCCCCCCCC
Q 001039 1 MARVFEYFVVCGIGPEIRTLDGSKGYHGPEYYYLSSVLDQFPPLNHSLYTPPPPQLSTCVLPAGVQFYSSGFDSDDPSTF 80 (1179)
Q Consensus 1 ~~rl~dyfvvvG~~~~~~~~~~~~~~~~~~~~~~p~vl~~yP~~~~~~~~~~~~~~~~fc~P~g~~~~~~~~~~~~~~~~ 80 (1179)
|.|+.|||+++|+|......-.+.+ +..-.|.|+.++|+.++++.+ +-..|..||-|.| |..+...++
T Consensus 1 m~~~~~~~~~~~~dt~~~~~~~~~~----~e~~~~~v~~~~~~~~~~d~~-~~~~i~~f~~p~g-------w~~~~~~~~ 68 (1732)
T KOG1090|consen 1 MRDPDKVKSGPICDTVAVIVLEESD----DENALPDVLHEVQSPHTSDNI-PTSSIKKFARPRG-------WYNQSVSSP 68 (1732)
T ss_pred CCChhhccccccccchhhhhhhhcC----CCcchhHHHhhcCCCCCCCCC-chhhHHHHhcccc-------chhhcccCc
Confidence 8999999999999987654322221 122389999999999999876 5688999999977 566777888
Q ss_pred CceeEEEEEcCCCCeEEEEEEEeccCCCHHHHHhccCCCCccCCeEEEEEcCCChHHHHHHHHHHHHHHhhccCCCCccH
Q 001039 81 PRTYPIVLTEGDGSKIYVSCISFRDPVSEDIAEAYRIPANSFADKCICLVSRSPSFRILRNALEEIYSLCFLSDGSSKPL 160 (1179)
Q Consensus 81 p~~f~fvlT~~~g~~~Yg~cl~f~e~~~~~~~~~~~~~~~~~~~~~icllS~~p~~~~f~~~L~~i~~~~~~~~~~~~~~ 160 (1179)
|.||+-|||+++|+|.||+||.|||.... ...|+++||+|||+.-+..+|+++|..|++... .+.....
T Consensus 69 ~~ff~~ilt~~~~~r~~~~~ls~~e~~~~---------t~~~~~~~ivlis~~~~~~~fk~~l~~i~~~~~--~~~~~~~ 137 (1732)
T KOG1090|consen 69 SEFFYQILTTERGTRRIAYVLSTWEEDEK---------TLNFKAVSIVLISQNFHPKAFKEILLEISNDLR--TPEFSSS 137 (1732)
T ss_pred chhhhhheecccCceeEEEEeehhhhhhh---------hhcccceEEEEEecccCHHHHHHHHHHHHHHhc--CcccccH
Confidence 99999999999999999999999988544 235899999999999999999999999999765 3456778
Q ss_pred HHHHHhhcccCCCCCCCCceEEeeeccceeEEeCCCCCCCCCCCcchHHHhccCChhhHHHHHHHHhccccEEEEeCCcc
Q 001039 161 WDVISHLVSNVPLPTPGKNRVLFAIENCLLSVEAPPKEGLPHADISFQPLVQLLDVDNLITLFTAVLLERRILLRSNKYS 240 (1179)
Q Consensus 161 ~~~i~~~l~~~p~P~pg~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~l~~~l~~~~~~~l~~~~L~E~~il~~s~~~~ 240 (1179)
+.+|.++.+++..|..+...+.+.++-..-.-..| .+|.++-.+..||+.||+.|++.|+.++|.|.||+|.|+.+.
T Consensus 138 ~~li~~l~~~l~~~~s~~~~~~~tl~~~~~~~l~p---~~p~tg~~v~~lfk~lg~qnvi~ii~a~lsd~ri~~~s~~~~ 214 (1732)
T KOG1090|consen 138 SELIRFLTYELVEEGSTIEIRTKTLHVELGFELIP---ISPVTGKDVAMLFKMLGFQNVIKIIHALLSDCRIVLASSSLM 214 (1732)
T ss_pred HHHHHHhheEEeecCCCCceEEEEeecccCceeee---cCCCCCccHHHHHHHhhhhHHHHHHHHHHhcceEeeehhHHH
Confidence 89999999999899999888888774322111123 678889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcccccCCCceeecccchhhhhhccCCcceEEeccCCCCccccCCCcEEEEEcCCCeeeCCC--CCCCCC
Q 001039 241 LLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSGVDTSNLAMDGVVVVDLEYNRICTTE--EIPPIP 318 (1179)
Q Consensus 241 ~ls~~~~al~~ll~P~~w~~~~IP~lP~~l~~~l~aP~P~iiGi~~~~~~~~~~~~~~~~vdlD~~~i~~~~--~~~~lP 318 (1179)
.|+.|+.|+++|||||+|.|.||||||.+|.++|++||||||||++++.....+ |+++||||+|.|..|+ +++.+|
T Consensus 215 ~ls~~~~ai~sllypf~y~h~~v~ilp~~l~evl~sptpfl~gv~s~~~t~~~d--e~ivv~ld~g~v~vpd~~~i~~~~ 292 (1732)
T KOG1090|consen 215 RLSRCQNAILSLLYPFEYVHSCVTILPDSLAEVLESPTPFLIGVLSEFVTSFGD--ENIVVYLDNGEVHVPDHAEIYKSD 292 (1732)
T ss_pred HHHHHHHHHHHHhcchheeeeeeeecccHHHHHhcCCCceeehhhHHHhhhcCC--ceEEEEecCCEEecCCceeeecCC
Confidence 999999999999999999999999999999999999999999999998665444 8999999999999997 489999
Q ss_pred chhhhhhHHHHHHhcCCCcccccccCCCCCCcccccccCCCCchhhhHHHHHHHHHHHHHHHhhHHhccccc-----Ccc
Q 001039 319 EPELSSLRGDILKLLYPNVVGIDRMNAGGSSEHYSKVCSKPWGEEHDLQLRFIFLKFLASILGGYRNFIENT-----GTQ 393 (1179)
Q Consensus 319 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~Fl~~~~~ll~~y~~~l~~~-----~~~ 393 (1179)
.+..+++..+|..++.+++..+|.+++..+. .......+|+++|++|+++|++||+|||.|+... ++.
T Consensus 293 ~~~~~~~~~~l~mvlfp~l~qaDLafP~p~~-------i~~~d~~~DKeLRA~FirlFAqLLqGYr~cl~~~RIhp~pvi 365 (1732)
T KOG1090|consen 293 DYYYNSLHQRLRMVLFPTLSQADLAFPNPER-------IEVDDFILDKELRACFIRLFAQLLQGYRYCLLYTRIHPTPVI 365 (1732)
T ss_pred cHHHHHHHHHHHHHhccccchhhcCCCChhh-------ccchHHHHhHHHHHHHHHHHHHHHHhhheeEEEEEecCCceE
Confidence 9999999999999999999999998874332 1223457899999999999999999999999643 688
Q ss_pred ccChHHHhcccccCCCCCCchHHHHHHHHhHHHHHHHcc-cCCCCCc---h-hHHHHHHHHhccCCCceeecCCCCCCCC
Q 001039 394 VFNAQAFLKKRSRSTNQPPDPMITQFLDSQGFLDYLERG-LGSDENN---S-NLLDKLQDAIGRGQNPTSILPSSSAEPE 468 (1179)
Q Consensus 394 ~F~~~~Fl~~~~~~~~~~~~~F~~~f~~tq~F~~Fie~~-~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1179)
.|++.+|+..|... +..|+. .++++.|+.|+.+| +--+..+ . .|.+..+..+.++..+..+.-..+ .|
T Consensus 366 tFHkaaFlG~R~L~----e~~fl~-vL~sm~F~tFv~eRg~P~R~~DlfDEl~~~~~~~~~~~~qn~t~~~~l~hi--qe 438 (1732)
T KOG1090|consen 366 TFHKAAFLGFRKLT----EMMFLS-VLKSMYFQTFVLERGLPRRKHDLFDELSCFKELDQLIFKQNSTSSESLKHI--QE 438 (1732)
T ss_pred EEehhhhcchhhhH----HHHHHH-HHHHHHHHHHHhhcCCCCCcchhHHHHHHhHHHHHHHHhhCccHHHHHHHH--HH
Confidence 99999999999887 557777 99999999999555 4222221 1 133322222222211111000000 00
Q ss_pred c-cccCCCCCCCCCCCcceeccCCCcCcchhhHHHHhhhhhhccCC---Cccc-CCCCCCCcccccccCcccc-CChHHH
Q 001039 469 V-ITISDPDIGTSGLGAKYTYDRFPSNVRTEEQEEKRRQILASASG---SFEY-SGKLNSPPSMLVSKDSKDS-LSPIER 542 (1179)
Q Consensus 469 ~-~~~~~~~~~~~~~~~~~~y~~fp~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~p~~p~~~~~~~~~~~-~~~~~r 542 (1179)
+ -..-+.+++++++.++. ++.||++....++| +.+++.+++.+ .+|. .+..|++|.+...-+.+.. +++++|
T Consensus 439 l~~~LyqnERp~E~~~~R~-q~~Fpri~~~sv~~-i~q~~~~k~~gvpp~~~~~r~~~pmgP~~~~~le~~~n~~~~sAr 516 (1732)
T KOG1090|consen 439 LSCELYQNERPMEKCSARK-QEIFPRIHWISVKE-IAQNNNSKIHGVPPKMRSNRILQPMGPVVNTHLEYHANQFEASAR 516 (1732)
T ss_pred HHHHHHhccCCcccchhcc-CCCCcccchHHHHH-HHHcchhhhcCCCccceeeeeeecCCCCchHHHHhccchhhhHHH
Confidence 0 00002236677888888 99999977777777 77777776642 2232 2579999988654444444 557999
Q ss_pred HHhhh---------ccchhhhhhhhHHHHHHHhcCCCCCCCCccccccEEeeecccccCCCCCCcchhhhhccccccccc
Q 001039 543 AAERD---------RMVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHIHSGWHCQ 613 (1179)
Q Consensus 543 ~~e~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 613 (1179)
|+|++ .||.+|+|+|| ||+|+|+. ++||.++ |++|++|++ +++
T Consensus 517 RlEvlRnClsyiFEgkv~~A~KlLp-AV~rsl~~--------------------r~aR~~L----crel~~~v~-~nk-- 568 (1732)
T KOG1090|consen 517 RLEVLRNCLSYIFEGKVAFASKLLP-AVKRSLRF--------------------RPARIEL----CRELNQKVS-HNK-- 568 (1732)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhH-HHHHHhcC--------------------ChHHHHH----HHHHHhhhc-ccc--
Confidence 99999 89999999999 99999999 9999999 999999999 777
Q ss_pred cChHHHHHHHHHHHHHHhhhhccCChHHHHHHH-HHHHHHHhhhcCCchhH----HHHHHhhhHHHHHHHHHHHHHH
Q 001039 614 LTEEQFIAVKELLKTAIGRATSRNDVSTIRDAL-EVSAEMFKKDANNVSDY----VQRHLISLSIWEELRFWEGYFD 685 (1179)
Q Consensus 614 l~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~l-~~~~~~~~~~~~~~~~y----~q~~l~~~p~~~~~~~~~~~~~ 685 (1179)
||+|||++|+++||+|||.|++ .|++||++|| |+|+.||||+++++.|| ||+| -||+|++|||++|-
T Consensus 569 LdhqQFe~vvr~MN~aLQ~~~~-~De~gvaaaLlplstvfcRKls~Gv~QfaYt~vQeH----~vWkn~qFWes~Fy 640 (1732)
T KOG1090|consen 569 LDHQQFEDVVRLMNAALQAECE-EDEDGVAAALLPLSTVFCRKLSQGVQQFAYTAVQEH----KVWKNQQFWESCFY 640 (1732)
T ss_pred ccHHHHHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----hhhcchHHHHHHHH
Confidence 9999999999999999999999 9999999999 99999999999999999 5999 99999999999994
No 2
>KOG3569 consensus RAS signaling inhibitor ST5 [Signal transduction mechanisms]
Probab=100.00 E-value=7.3e-66 Score=540.59 Aligned_cols=378 Identities=28% Similarity=0.520 Sum_probs=315.7
Q ss_pred CcceEEEEEEccCCCccccCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCcccCCCceEEeecCCCCCCCCCCC
Q 001039 2 ARVFEYFVVCGIGPEIRTLDGSKGYHGPEYYYLSSVLDQFPPLNHSLYTPPPPQLSTCVLPAGVQFYSSGFDSDDPSTFP 81 (1179)
Q Consensus 2 ~rl~dyfvvvG~~~~~~~~~~~~~~~~~~~~~~p~vl~~yP~~~~~~~~~~~~~~~~fc~P~g~~~~~~~~~~~~~~~~p 81 (1179)
..+||||++|.++...+ ..|.|.|.++||+.-++ ++....||+||||.++++.+ ..+.+
T Consensus 11 ~~lfe~f~evs~pk~~~------------~~~~P~v~~QFP~d~~d--ee~lkaipqFCFP~~~e~~~-------vs~~~ 69 (425)
T KOG3569|consen 11 RTLFEYFVEVSLPKKPG------------NTYLPEVTYQFPPDFQD--EEILKAIPQFCFPDAVEWLP-------VSEYG 69 (425)
T ss_pred ccceeEEEEEecCCCCC------------CccCccchhhCCCcccc--HHHHhhchhccCCccccccc-------ccccc
Confidence 35899999999776642 23799999999976664 35678999999999998754 22344
Q ss_pred -ceeEEEEEcCCCCeEEEEEEEeccCCCHHHHHhccCCCCccCCeEEEEEcCCChHHHHHHHHHHHHHHhhccCCCCccH
Q 001039 82 -RTYPIVLTEGDGSKIYVSCISFRDPVSEDIAEAYRIPANSFADKCICLVSRSPSFRILRNALEEIYSLCFLSDGSSKPL 160 (1179)
Q Consensus 82 -~~f~fvlT~~~g~~~Yg~cl~f~e~~~~~~~~~~~~~~~~~~~~~icllS~~p~~~~f~~~L~~i~~~~~~~~~~~~~~ 160 (1179)
++|+|||||+||+|.+|+|. .++. .|+||||||+.|||++|.++|+.+..+.... ....+
T Consensus 70 ~q~FsFvLTd~dg~rrFGfCR---------------L~~G--~~~c~CilS~l~wF~vF~KlLn~v~~~~~~~--q~~~v 130 (425)
T KOG3569|consen 70 SQTFSFVLTDEDGSRRFGFCR---------------LPSG--LPECYCILSRLGWFGVFSKLLNEVEDRRGIS--QEADV 130 (425)
T ss_pred cceEEEEEEcCCCceeeeeEe---------------cCCC--CCeEEEEeeCCChHHHHHHHHHHHHHHhcch--HHHHH
Confidence 79999999999999999995 2222 7899999999999999999999998875422 23344
Q ss_pred HHHHHhhcccCCCCCCCCceEEeeeccceeEEeCCCCCCCCCC--CcchHHHhccCChhhHHHHHHHHhccccEEEEeCC
Q 001039 161 WDVISHLVSNVPLPTPGKNRVLFAIENCLLSVEAPPKEGLPHA--DISFQPLVQLLDVDNLITLFTAVLLERRILLRSNK 238 (1179)
Q Consensus 161 ~~~i~~~l~~~p~P~pg~~~~~~~~~~~~~~~~~p~~~~lp~~--~~~~~~l~~~l~~~~~~~l~~~~L~E~~il~~s~~ 238 (1179)
+..+.+ +++.|+|.||.+..+............|...+||.. +..|..||.+++++|++.||+++|+||||||++++
T Consensus 131 ~~~l~~-l~~~p~P~pg~tv~l~~~~~~~~~e~ipd~r~LpS~~E~~~f~elf~als~~qml~ifASlL~ERRIifia~K 209 (425)
T KOG3569|consen 131 EPFLRS-LYEAPFPAPGKTVKLKVFSPGSGTEVIPDTRPLPSILEHVDFTELFVALSVRQMLQIFASLLLERRIIFIASK 209 (425)
T ss_pred HHHHHH-HhcCCCCCCCCeEEEEecCCCCceEECcCCCCCCCcccccCHHHHHhhcCHHHHHHHHHHHHhhceeEeeccc
Confidence 445555 677899999988555443322234556777777754 56799999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHcccccCCCceeecccchhhhhhccCCcceEEeccCCC--CccccCCCcEEEEEcCCCeeeCC-CCCC
Q 001039 239 YSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSGV--DTSNLAMDGVVVVDLEYNRICTT-EEIP 315 (1179)
Q Consensus 239 ~~~ls~~~~al~~ll~P~~w~~~~IP~lP~~l~~~l~aP~P~iiGi~~~~--~~~~~~~~~~~~vdlD~~~i~~~-~~~~ 315 (1179)
++.||+|++|..+|||||.|||+|||+||++|+||++|||||+||||++. +..+.+.+||++||||+|+++.+ +|+.
T Consensus 210 LStLssCiHa~~ALLYPm~WqH~yIPvLPpsLlD~vCaPmPyLIGv~~s~lerv~~~~leeVv~vnld~~tl~~~fdD~~ 289 (425)
T KOG3569|consen 210 LSTLSSCIHAVAALLYPMSWQHTYIPVLPPSLLDYVCAPMPYLIGVHSSLLERVRELPLEEVVMVNLDENTLESPFDDVQ 289 (425)
T ss_pred hhHHHHHHHHHHHHhhhhhhheeeeccCCHHHHhHhcCCcceeecchHHHHHHHhhCCccceEEEEccCCeeeccccchh
Confidence 99999999999999999999999999999999999999999999999986 66678889999999999999998 7799
Q ss_pred CCCchhhhhhHHHHHHhcCCCcccccccCCCCCCcccccccCCCCchhhhHHHHHHHHHHHHHHHhhHHhccccc--Ccc
Q 001039 316 PIPEPELSSLRGDILKLLYPNVVGIDRMNAGGSSEHYSKVCSKPWGEEHDLQLRFIFLKFLASILGGYRNFIENT--GTQ 393 (1179)
Q Consensus 316 ~lP~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~Fl~~~~~ll~~y~~~l~~~--~~~ 393 (1179)
.||.+..+.|+++|++.- + ..+..+.++|+|+|+.+|++|+++++.. ...
T Consensus 290 ~LP~~v~~~Lk~~L~k~~---l-------------------------a~~d~Vs~~Flra~v~lfG~Y~~~l~~~~~e~~ 341 (425)
T KOG3569|consen 290 ALPPKVQSALKNRLRKNE---L-------------------------ATNDGVSRAFLRAFVELFGHYRSALTQSPGEPR 341 (425)
T ss_pred hCCHHHHHHHHHHHhhhc---c-------------------------ccCcchHHHHHHHHHHHhhhhhhhcccCCCCCc
Confidence 999998888888887621 0 1145678899999999999999999865 578
Q ss_pred ccChHHHhcc-cccCCCCCCchHHHHHHHHhHHHHHHHcccCCCCCchhHHHHHHHHhcc
Q 001039 394 VFNAQAFLKK-RSRSTNQPPDPMITQFLDSQGFLDYLERGLGSDENNSNLLDKLQDAIGR 452 (1179)
Q Consensus 394 ~F~~~~Fl~~-~~~~~~~~~~~F~~~f~~tq~F~~Fie~~~~~~~~~~~~~~~~~~~~~~ 452 (1179)
.|.+++|.++ ++++ .+.|++.|+++|+|.+||++|+...+.+..+.|...+|+..
T Consensus 342 tF~eE~F~k~~~s~s----~r~Fl~~~~~~QlF~~FI~~Rl~~~n~g~G~~dqfe~Ei~~ 397 (425)
T KOG3569|consen 342 TFQEEAFVKQVRSKS----MRRFLEVFVELQLFKQFIQDRLELKNDGKGFFDQFEEEIEE 397 (425)
T ss_pred eeeHHHHHHHcccHH----HHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHh
Confidence 9999999999 5444 67999999999999999999999888888888888877763
No 3
>KOG3570 consensus MAPK-activating protein DENN [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-51 Score=462.02 Aligned_cols=417 Identities=23% Similarity=0.383 Sum_probs=321.9
Q ss_pred CcceEEEEEEccCCCccccCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCcccCCCceEEeecCCCCCCCCCCC
Q 001039 2 ARVFEYFVVCGIGPEIRTLDGSKGYHGPEYYYLSSVLDQFPPLNHSLYTPPPPQLSTCVLPAGVQFYSSGFDSDDPSTFP 81 (1179)
Q Consensus 2 ~rl~dyfvvvG~~~~~~~~~~~~~~~~~~~~~~p~vl~~yP~~~~~~~~~~~~~~~~fc~P~g~~~~~~~~~~~~~~~~p 81 (1179)
.||+||.||||-..-... . .+-.|++|.|||.+|+.+|| +|..+-.||-|+|+.-..+. ......+
T Consensus 9 PRL~DylviVGar~P~~~----~------~vq~PelLRRYP~~DH~dFp-LP~Dvv~FCQPEGCtsv~~R---r~~~rD~ 74 (1588)
T KOG3570|consen 9 PRLLDYLVIVGARHPSSD----S------VAQTPELLRRYPLEDHTEFP-LPPDVVFFCQPEGCLSVRQR---RMSLRDD 74 (1588)
T ss_pred hHHhhhhheecccCCCCC----C------ccccHHHHhhCCccccccCC-CCCCeEEEeCCccccchhhh---hhcccCC
Confidence 489999999995421111 1 23489999999999999998 55678899999999765422 1124467
Q ss_pred ceeEEEEEcCCCCeE-EEEEEEeccCCCHHHHHh--------c---------------------c---CC----------
Q 001039 82 RTYPIVLTEGDGSKI-YVSCISFRDPVSEDIAEA--------Y---------------------R---IP---------- 118 (1179)
Q Consensus 82 ~~f~fvlT~~~g~~~-Yg~cl~f~e~~~~~~~~~--------~---------------------~---~~---------- 118 (1179)
++|+|.|||.|..++ ||+|+.||+++.+..... . . .|
T Consensus 75 tsFVF~LTdKDsgktRYGICvNFYrsf~~r~s~~~g~~gag~Rg~~g~h~~~a~~~gg~~~s~s~s~~qP~sads~~~~~ 154 (1588)
T KOG3570|consen 75 TSFVFTLTDKDTGVTRYGICVNFYRSFQKRISKEKGEGGAGSRGKEGTHATCASEEGGTESSESGSSLQPLSADSTPDVN 154 (1588)
T ss_pred ceEEEEEecccCcceeeEEEeeeehhhhhccchhccccccccCCCCCCccccccCCCCcCcCcCCcCcCCCccCCCCccc
Confidence 899999999987766 999999999987432110 0 0 00
Q ss_pred --------------CCccCCeEEEEEcCCChHHHHHHHHHHHHHHhhccCC-------------------------C---
Q 001039 119 --------------ANSFADKCICLVSRSPSFRILRNALEEIYSLCFLSDG-------------------------S--- 156 (1179)
Q Consensus 119 --------------~~~~~~~~icllS~~p~~~~f~~~L~~i~~~~~~~~~-------------------------~--- 156 (1179)
.....-.++|+|||||||+.||++|..|.++....+. +
T Consensus 155 ~sP~~~r~a~~~~r~rn~sLTSLC~iSHhPFfstFrecL~~LKrliD~cner~~~kr~G~~~~v~rD~vW~ilTG~h~~e 234 (1588)
T KOG3570|consen 155 QSPRGKRRAKAGSRSRNSTLTSLCVLSHYPFFSTFRECLYTLKRLVDCCSERLLGKKLGIPRGVQRDTMWRIFTGSLLVE 234 (1588)
T ss_pred cCCCCchhhhhcccccccchhhhhhhccCchHHHHHHHHHHHHHHHHhhcccchhhhcCCcccccccceeeeeccccccc
Confidence 0123456899999999999999999988876311000 0
Q ss_pred ---------CccHHHHHHhhcccCCCCCCCCceEEeeec----cceeEEeCCCCCCCCCCCcchHHHhccCChhhHHHHH
Q 001039 157 ---------SKPLWDVISHLVSNVPLPTPGKNRVLFAIE----NCLLSVEAPPKEGLPHADISFQPLVQLLDVDNLITLF 223 (1179)
Q Consensus 157 ---------~~~~~~~i~~~l~~~p~P~pg~~~~~~~~~----~~~~~~~~p~~~~lp~~~~~~~~l~~~l~~~~~~~l~ 223 (1179)
...||.+|..+|.. |+|.||..+|.+.+- .+.+.|..|+...+.+.|+++...|+.||++..++++
T Consensus 235 ~~~s~vlhd~rEIEtWIlrLLss-PVPVpG~trV~iEVlp~~l~~~l~FALPDhtRFtLvDFPLHlPlElLGvd~cL~Vl 313 (1588)
T KOG3570|consen 235 EKSSALLHDLREIEAWIYRLLRS-PVPVSGQKRVDIEVLPQELQPALTFALPDPSRFTLVDFPLHLPLELLGVDACLQVL 313 (1588)
T ss_pred cccHHHHHHHHHHHHHHHHHhcC-CCCCCCcceeEEEecChhcccceeeccCCCceeeeecccccCcHHHhhHHHHHHHH
Confidence 11278888887754 899999999998873 4557888999999999999999999999999999999
Q ss_pred HHHhccccEEEEeCCcchHHHHHHHHHHcccccCCCceeecccchhh---hhhccCCcceEEeccCCC---CccccCCCc
Q 001039 224 TAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSG---VDYIDAPTPYMMGLHSGV---DTSNLAMDG 297 (1179)
Q Consensus 224 ~~~L~E~~il~~s~~~~~ls~~~~al~~ll~P~~w~~~~IP~lP~~l---~~~l~aP~P~iiGi~~~~---~~~~~~~~~ 297 (1179)
+|+|+|+||+|.|++|+.|++++.|+++||||++|.++.||+||..| ..+|-||+||||||++++ +....-++|
T Consensus 314 T~imlE~Kvv~QSRdYNAlSMsvmafVamlYPLEYMFPVIPLLPtcm~sAEQLLLAPTPfiIGVPaSFf~ykk~f~lPdD 393 (1588)
T KOG3570|consen 314 TCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLLLAPTPYIIGVPASFFLYKLDFKMPDD 393 (1588)
T ss_pred HHHHHhceeeeeeccccHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHhcCCCCeEeccchHHhhhhhhccCCCc
Confidence 99999999999999999999999999999999999999999999755 578999999999999987 333445689
Q ss_pred EEEEEcCCCeeeCCC---CCCCCCchhhhhhHHHHHHhcCCCcc---cccccCC-----------C--------CCCccc
Q 001039 298 VVVVDLEYNRICTTE---EIPPIPEPELSSLRGDILKLLYPNVV---GIDRMNA-----------G--------GSSEHY 352 (1179)
Q Consensus 298 ~~~vdlD~~~i~~~~---~~~~lP~~~~~~l~~~l~~~l~~~~~---~~~~~~~-----------~--------~~~~~~ 352 (1179)
|++||||++++..|. .+|.||+++...||++|+++++.... .+....+ . .++...
T Consensus 394 vwlVDLDsn~l~~Pt~~e~iP~LPEPe~t~LK~hLKqa~~~~sln~~~~~~~~~~h~~q~~~m~~~~~~n~~q~~pst~~ 473 (1588)
T KOG3570|consen 394 VWLVDLDSNRVIAPTNAEVLPILPEPESLELKKHLKQALASMSLNTQPILNLEKFHEGQEIPLLLGRPSNDLQSTPSTEF 473 (1588)
T ss_pred eEEEecCCCceeCCCCcccCCCCCCcchHHHHHHHHhhHhhhcccccccccccCcccccccceecCCccccccCCCCccc
Confidence 999999999999984 59999999999999999998542211 1110000 0 000000
Q ss_pred ccccCCCCchhhhHHHHHHHHHHHH--HHHhhHHhccccc-----CccccChHHHhcccccCCCCCCchHHHHHHHHhHH
Q 001039 353 SKVCSKPWGEEHDLQLRFIFLKFLA--SILGGYRNFIENT-----GTQVFNAQAFLKKRSRSTNQPPDPMITQFLDSQGF 425 (1179)
Q Consensus 353 ~~~~~~~~~~~~~~~ir~~Fl~~~~--~ll~~y~~~l~~~-----~~~~F~~~~Fl~~~~~~~~~~~~~F~~~f~~tq~F 425 (1179)
............|.+-|-|+.+||. ..|+++..+-+.. ++..|...+||.+|++. .+|+.+|..||+.
T Consensus 474 np~~yG~DvDSVDVAtRVAMVrFFNsaNvl~nF~eHTRTLRLyPRPVVafQ~~SFLrSRPr~-----tqf~~~laRTQAV 548 (1588)
T KOG3570|consen 474 NPLIYGNDVDSVDVATRVAMVRFFNSANVLQGFQMHTRTLRLFPRPVVAFQAGSFLASRPRQ-----TPFAEKLARTQAV 548 (1588)
T ss_pred CchhccCccchhhhHHHHHHHHHhhhHHHhhhHHhhhhhhhccCcceeEEeccchhhcCccc-----cHHHHHHHHHHHH
Confidence 0011112223467899999999995 5788888766432 67889999999999885 5899999999999
Q ss_pred HHHHHcccCCCCC
Q 001039 426 LDYLERGLGSDEN 438 (1179)
Q Consensus 426 ~~Fie~~~~~~~~ 438 (1179)
++|-|.++.+.+.
T Consensus 549 EyfaEw~L~PtN~ 561 (1588)
T KOG3570|consen 549 EYFGEWILNPTNY 561 (1588)
T ss_pred HHHHHhhcCcchH
Confidence 9999999887543
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.8e-49 Score=412.40 Aligned_cols=362 Identities=22% Similarity=0.386 Sum_probs=308.9
Q ss_pred CCCcccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEee
Q 001039 759 QQPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCV 836 (1179)
Q Consensus 759 ~~~~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s 836 (1179)
.....+.||.+.|.+++|||||+.+++|+.| +|+||.++.. +..+.+||...|.|++|+
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT-------------------p~~t~KgH~~WVlcvaws 166 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET-------------------PLFTCKGHKNWVLCVAWS 166 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC-------------------cceeecCCccEEEEEEEC
Confidence 3444578999999999999999999999999 9999999887 788999999999999998
Q ss_pred cccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEe-------cCCCEEEEEeCCCcEEEEE
Q 001039 837 TKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAIN-------SDRGKVVSGSDDQSVLVWD 909 (1179)
Q Consensus 837 ~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s-------~d~~~l~sgs~dg~I~iwd 909 (1179)
|||+.||||+.||+|++||.. .+.+....+.+|...|++++ |..+++++++.||+|+|||
T Consensus 167 ------------PDgk~iASG~~dg~I~lwdpk-tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd 233 (480)
T KOG0271|consen 167 ------------PDGKKIASGSKDGSIRLWDPK-TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWD 233 (480)
T ss_pred ------------CCcchhhccccCCeEEEecCC-CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEE
Confidence 899999999999999999987 56777789999999999763 6678999999999999999
Q ss_pred CCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 001039 910 KQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVAN 989 (1179)
Q Consensus 910 ~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~ 989 (1179)
+..++++..+.+|+.+|+|+.|-..+++++|+.|++|++|+...|.+.+.+++|...|+.++.+.+-- |-+|..|.+=+
T Consensus 234 ~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~-LRtgaf~~t~~ 312 (480)
T KOG0271|consen 234 TKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV-LRTGAFDHTGR 312 (480)
T ss_pred ccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh-hhccccccccc
Confidence 99999999999999999999999889999999999999999999999999999999999999886532 33343332111
Q ss_pred EEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccC-CeeeEEeecCCcCEEEEEEecCCCEEEEEeCCC
Q 001039 990 IWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISR-GTCDAVLACHAGPVQCVEYSSSDRGIITGSSDG 1068 (1179)
Q Consensus 990 iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg 1068 (1179)
-....+ +..++ .-...-..+.-+++.+++|+.|.++.+|+-.. .+++..+.+|..-|+.+.||||++++|+++-|.
T Consensus 313 ~~~~~s-e~~~~--Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk 389 (480)
T KOG0271|consen 313 KPKSFS-EEQKK--ALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK 389 (480)
T ss_pred cCCChH-HHHHH--HHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc
Confidence 110000 00000 00000111223567999999999999999754 457888999999999999999999999999999
Q ss_pred cEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCc
Q 001039 1069 LLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTV 1146 (1179)
Q Consensus 1069 ~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~ 1146 (1179)
.|++||.++ .+.+..+++|-..|+.+ +.|.++|++|+.|.++++||+.++ ++...+.+|.
T Consensus 390 SVkLW~g~t---Gk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk---------------Kl~~DLpGh~ 451 (480)
T KOG0271|consen 390 SVKLWDGRT---GKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK---------------KLKQDLPGHA 451 (480)
T ss_pred ceeeeeCCC---cchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeee---------------eecccCCCCC
Confidence 999999999 57888899999999777 678899999999999999999855 5667788999
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001039 1147 AVVRCIASDLERKRICSGGRNGLLRLWE 1174 (1179)
Q Consensus 1147 ~~V~~v~fspdg~~Lasgs~Dg~I~vWd 1174 (1179)
..|.++.|+|||+.+++|+.|..+++|.
T Consensus 452 DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 452 DEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999999999999995
No 5
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-48 Score=439.31 Aligned_cols=420 Identities=27% Similarity=0.429 Sum_probs=313.1
Q ss_pred CcceEEEEEEccCCCccccCC-CCCCCCCccccccccccccccCCCCCCCCCCCCCCcccCCCceEEeecCCCCCCCCCC
Q 001039 2 ARVFEYFVVCGIGPEIRTLDG-SKGYHGPEYYYLSSVLDQFPPLNHSLYTPPPPQLSTCVLPAGVQFYSSGFDSDDPSTF 80 (1179)
Q Consensus 2 ~rl~dyfvvvG~~~~~~~~~~-~~~~~~~~~~~~p~vl~~yP~~~~~~~~~~~~~~~~fc~P~g~~~~~~~~~~~~~~~~ 80 (1179)
+|+++||+++|.|-....... -.|..-+-.+ .-+.+.+||++... .|+.-..+-+.|+|.|+.++.+ +....
T Consensus 67 ~r~~~~f~~~~~dl~~~~~~sr~~g~n~~~~p-L~kpla~ypenvpw-nPfd~~~~~ml~mP~gl~frtq-----~~~~E 139 (1295)
T KOG2080|consen 67 IRLFSCFLLEHQDLLCSKDLSRLMGVNESLLP-LSKPLAWYPENVPW-NPFDKLDFFMLCMPKGLGFRTQ-----DDVPE 139 (1295)
T ss_pred HHHHHHHHHhhhhccccccchhhhccCccccc-ccchhhcCccCCCC-Ccccccceeeeccccccceecc-----CCCCc
Confidence 467777777776543321100 0000000011 22789999998765 5666677888999999988764 45567
Q ss_pred CceeEEEEEcCCCCeEEEEEEEeccCCCHH-H------------HHhc-----------c--------C-----------
Q 001039 81 PRTYPIVLTEGDGSKIYVSCISFRDPVSED-I------------AEAY-----------R--------I----------- 117 (1179)
Q Consensus 81 p~~f~fvlT~~~g~~~Yg~cl~f~e~~~~~-~------------~~~~-----------~--------~----------- 117 (1179)
|+|++|+.|.+||.|.||..++|||.+... + .+.+ . .
T Consensus 140 p~FhSfiitredG~r~ygf~l~fyeevrsk~ic~am~tl~~m~~te~~nsl~~~s~sd~~l~ssldrsep~~v~v~g~~~ 219 (1295)
T KOG2080|consen 140 PQFHSFIITREDGSRTYGFDLTFYEEVRSKQICGAMQTLYSMHNTEIYNSLEALSDSDKDLTSSLDRSEPTEVVVLGRVK 219 (1295)
T ss_pred hhhheeeEEcccCccccCcceeechhhchhhhhhHHHHHHHHHHHHhhhhhhcCccchhhccCccccCCCceeeeechhh
Confidence 999999999999999999999999987621 1 0000 0 0
Q ss_pred ------CCCccCCeEEEEEcCCChHHHHHHHHHHHHHHhhccCCCCccHHHHHHhhcccCCCCCCCCceEEeeeccceeE
Q 001039 118 ------PANSFADKCICLVSRSPSFRILRNALEEIYSLCFLSDGSSKPLWDVISHLVSNVPLPTPGKNRVLFAIENCLLS 191 (1179)
Q Consensus 118 ------~~~~~~~~~icllS~~p~~~~f~~~L~~i~~~~~~~~~~~~~~~~~i~~~l~~~p~P~pg~~~~~~~~~~~~~~ 191 (1179)
....|+.||||++...||-.+.+++|..+|+.....+...+|+|.+|.|+++++|+|.||+....+..-.. +.
T Consensus 220 ~~ydi~rd~lyvaKsi~li~~lp~~~A~~~fL~~lyr~~trq~~~plpLEsyi~Nilyev~lp~pgrsl~vy~~~~~-ii 298 (1295)
T KOG2080|consen 220 NSYDISRDTLYVAKSICLITPLPFMSACSEFLSQLYRAVTRQQPPPLPLESYIYNILYEVPLPPPGRSLKVYGVYDP-II 298 (1295)
T ss_pred hccccccchHHhhhheeecccchHHHHHHHHHHHHHhccCCCCCCCcCHHHHHhhhheecccCCCCceeeEEecCCc-cc
Confidence 01379999999999999999999999999998777777889999999999999999999998666555443 45
Q ss_pred EeCCCCCCCCCCCcchHHHhccCChhhHHHHHHHHhccccEEEEeCCcchHHHHHHHHHHcccccCCCceeecccchhhh
Q 001039 192 VEAPPKEGLPHADISFQPLVQLLDVDNLITLFTAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGV 271 (1179)
Q Consensus 192 ~~~p~~~~lp~~~~~~~~l~~~l~~~~~~~l~~~~L~E~~il~~s~~~~~ls~~~~al~~ll~P~~w~~~~IP~lP~~l~ 271 (1179)
.++|..+++|+.|+.+..+|..||++|++++|+|+|+|.+|++.|.++.+|..++|.+.+|||||+|||+|+||||.+++
T Consensus 299 ~q~~~a~elpL~dfplR~~F~~lgVenviql~tCvLle~qill~s~dyqrlm~v~e~itsllfpf~w~hvy~pilpa~l~ 378 (1295)
T KOG2080|consen 299 CQRPFADELPLDDFPLREYFELLGVENVIQLFTCVLLENQILLYSQDYQRLMTVAECITSLLFPFQWQHVYVPILPASLL 378 (1295)
T ss_pred ccCCCCcccccccHhHHHHHHHhcchHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhhhhhccccccccccccccHHHHH
Confidence 56888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCcceEEeccCCCCcc-ccC-CCcEEEEEcCCCeeeCCCCCCCCCchh--hhhhHHHHHHhc----C---------
Q 001039 272 DYIDAPTPYMMGLHSGVDTS-NLA-MDGVVVVDLEYNRICTTEEIPPIPEPE--LSSLRGDILKLL----Y--------- 334 (1179)
Q Consensus 272 ~~l~aP~P~iiGi~~~~~~~-~~~-~~~~~~vdlD~~~i~~~~~~~~lP~~~--~~~l~~~l~~~l----~--------- 334 (1179)
.+|+||+|||||.|++.+.. +.+ -...++||+|+..|+.|+++|.+|.+. ...+-.-|.+.. .
T Consensus 379 hFldapvp~lmGlhs~drs~~el~~Ea~lcFvdid~~~iqlpeelp~fp~klef~~e~s~il~kf~~~~~~p~EGs~~~d 458 (1295)
T KOG2080|consen 379 HFLDAPVPYLMGLHSDDRSKLELPQEANLCFVDIDNHFIQLPEELPQFPNKLEFQQETSEILSKFGSQWEIPPEGSLHCD 458 (1295)
T ss_pred HHhcCCcceecccCcccHhhhcCcchhhhhhhhhhhcccCCchhcccchhHHHHHHHHHHHHHHhhccccCCCccccchh
Confidence 99999999999999986332 222 235789999999999999999999753 111111111111 0
Q ss_pred -----------------CCc------------------ccccccCC----------------------------------
Q 001039 335 -----------------PNV------------------VGIDRMNA---------------------------------- 345 (1179)
Q Consensus 335 -----------------~~~------------------~~~~~~~~---------------------------------- 345 (1179)
+.+ ...|...+
T Consensus 459 ~~iS~~k~l~g~~lvr~~t~~~tp~g~vat~~l~s~~~~k~d~vi~~~~~La~r~gVr~eg~~p~~~l~tt~~~~~~~~s 538 (1295)
T KOG2080|consen 459 ESISKLKDLLGVSLVRDKTYEATPNGNVATEDLISYELLKTDEVIARLQALAKRTGVRYEGAWPVHQLNTTLLDGANLIS 538 (1295)
T ss_pred hhHHHHHhhhhhhhhcCcccccCCCCccccCchhhcccccccchhhhHHHHHhccCccccCCCcceeccccccccccccC
Confidence 000 00000000
Q ss_pred CCCC--ccc---ccccCCC------CchhhhHHHHHHHHHHHHHHHhhHHhccccc------------CccccChHHHhc
Q 001039 346 GGSS--EHY---SKVCSKP------WGEEHDLQLRFIFLKFLASILGGYRNFIENT------------GTQVFNAQAFLK 402 (1179)
Q Consensus 346 ~~~~--~~~---~~~~~~~------~~~~~~~~ir~~Fl~~~~~ll~~y~~~l~~~------------~~~~F~~~~Fl~ 402 (1179)
+.++ .+. .+..+.. ..-..+..+|++|++-|.++|..|..|.... ....|||.+|+.
T Consensus 539 p~~~~~~~~~~r~k~qKl~~~~~~~qd~r~n~~~revflnrf~~mf~~ye~fvi~~~Q~~eew~tnre~mqnfDK~s~~s 618 (1295)
T KOG2080|consen 539 PAPSPWRQRYPRLKDQKLGCNENELQDYRLNSQYREVFLNRFTQMFADYEQFVIQPQQDLEEWKTNREQMQNFDKMSFLS 618 (1295)
T ss_pred cCCCccccccchhhhhccCcccchhheecchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHhhhhhhhhcc
Confidence 0000 000 0000000 1112457899999999999999999988643 245699999998
Q ss_pred ccccCCCCCCchHHHHHHHHhHHHHHHHccc
Q 001039 403 KRSRSTNQPPDPMITQFLDSQGFLDYLERGL 433 (1179)
Q Consensus 403 ~~~~~~~~~~~~F~~~f~~tq~F~~Fie~~~ 433 (1179)
..+.. .++|+.+|+++|||..||+..+
T Consensus 619 dQp~h----~~afls~fle~qlfasfidnli 645 (1295)
T KOG2080|consen 619 DQPEH----LLAFLSRFLENQLFASFIDNLI 645 (1295)
T ss_pred cChhh----HHHHHHHHHHHHHHHHHHHHHH
Confidence 76655 6799999999999999999665
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.3e-42 Score=359.93 Aligned_cols=313 Identities=26% Similarity=0.417 Sum_probs=275.1
Q ss_pred cccccccCcc-cc-cCCCCC-CCCC-----------CCCCCcccccCCcceEEE-EEccCCCceeeccCc--eEeeeCCC
Q 001039 735 SIKGQSSLSN-GM-PSPLSK-DATN-----------DDQQPAEASGIGRSWVQS-MFSREASSRSHSFSR--VRKWTSDA 797 (1179)
Q Consensus 735 ~~~~~~~~~~-~~-fSP~g~-~~~~-----------~~~~~~~~~gh~~~i~~~-~fSpdg~~las~~~d--I~vWd~~~ 797 (1179)
+.+...-+.+ |+ |||+|+ ...| .+..|..+...|.+|+.+ +|||||+.+|+|+.+ |++||-.+
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence 4555555556 78 999998 1121 445555555555666655 999999999999999 99999999
Q ss_pred CCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEE
Q 001039 798 ANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRA 877 (1179)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~ 877 (1179)
|+. ..+.|.||+..|++++|.|-.. .|..++||+++.||+|+|||+. ...++.
T Consensus 189 g~~------------------~g~~l~gH~K~It~Lawep~hl-------~p~~r~las~skDg~vrIWd~~--~~~~~~ 241 (480)
T KOG0271|consen 189 GQQ------------------IGRALRGHKKWITALAWEPLHL-------VPPCRRLASSSKDGSVRIWDTK--LGTCVR 241 (480)
T ss_pred CCc------------------ccccccCcccceeEEeeccccc-------CCCccceecccCCCCEEEEEcc--CceEEE
Confidence 885 4467999999999999987432 4788899999999999999965 667788
Q ss_pred EeccccccEEEEecC-CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe------------------------
Q 001039 878 TLKGHTRTVRAINSD-RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML------------------------ 932 (1179)
Q Consensus 878 ~l~~h~~~v~~~s~d-~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s------------------------ 932 (1179)
.+.||+.+|+|+... ..++++|+.|++|++|+...|++.+.+++|...|+.++.+
T Consensus 242 ~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~ 321 (480)
T KOG0271|consen 242 TLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQ 321 (480)
T ss_pred EeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHH
Confidence 999999999999776 5789999999999999999999999999999999999875
Q ss_pred -------------CCCEEEEEEcCCeEEEEeCCCC-eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 001039 933 -------------SGERVLTASHDGTVKMWDVRTD-TCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ 998 (1179)
Q Consensus 933 -------------~~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~ 998 (1179)
.+..+++|+.|.++.+|+.... +++..+.+|..-|..+.||||++++|+++.|..|++||.++|+.
T Consensus 322 ~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~ 401 (480)
T KOG0271|consen 322 KKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF 401 (480)
T ss_pred HHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcch
Confidence 1235999999999999997654 57888889999999999999999999999999999999999999
Q ss_pred eEEeecCCCCeEEEEEcCC--EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001039 999 MHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074 (1179)
Q Consensus 999 ~~~~~~~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd 1074 (1179)
+.++++|-..|..++|+.+ ++++|+.|.++++||+++.+....+.+|...|.++.|+|||..+++|+.|..+++|.
T Consensus 402 lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 402 LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred hhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 9999999999999999665 999999999999999999999999999999999999999999999999999999994
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.9e-39 Score=345.54 Aligned_cols=277 Identities=23% Similarity=0.377 Sum_probs=261.4
Q ss_pred CCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecc
Q 001039 767 IGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDL 844 (1179)
Q Consensus 767 h~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~ 844 (1179)
..+++..+.||+|++.+|||+.+ ++||++.+.. .+++|.||++.|.++.|+|.
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-------------------~~~~l~gH~~~v~~~~fhP~------ 228 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-------------------LLQTLRGHTSRVGAAVFHPV------ 228 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-------------------eeEEEeccccceeeEEEccC------
Confidence 35789999999999999999988 9999999776 78999999999999999962
Q ss_pred ccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE--EEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecC
Q 001039 845 VGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGH 922 (1179)
Q Consensus 845 ~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h 922 (1179)
.++..+|||+.||++++|+++ +..++..+.+|...|. +|+|+|++|+|++.|.+-++||+.++..+....||
T Consensus 229 ----~~~~~lat~s~Dgtvklw~~~--~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH 302 (459)
T KOG0272|consen 229 ----DSDLNLATASADGTVKLWKLS--QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH 302 (459)
T ss_pred ----CCccceeeeccCCceeeeccC--CCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccc
Confidence 147799999999999999976 5577789999999888 56999999999999999999999999999999999
Q ss_pred CCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 001039 923 DAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHK 1001 (1179)
Q Consensus 923 ~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~ 1001 (1179)
...|.+++|. +|..+++|+.|..-+|||+++|+++..+.+|..+|.+++|+|+|..+|+|+.|++++|||++..+.+..
T Consensus 303 s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ 382 (459)
T KOG0272|consen 303 SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYT 382 (459)
T ss_pred ccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccccee
Confidence 9999999999 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCeEEEEEcC---CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001039 1002 FLGHTKWIRSIRMDR---DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074 (1179)
Q Consensus 1002 ~~~~~~~I~sl~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd 1074 (1179)
+.+|.+-|+.+.+++ .+|++++.|+++++|...++.+++++.+|++.|.++.+++|++++++++.|.++++|.
T Consensus 383 ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 383 IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999965 4999999999999999999999999999999999999999999999999999999995
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.5e-39 Score=343.43 Aligned_cols=269 Identities=23% Similarity=0.396 Sum_probs=255.0
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeCC---CEEEEEEcCCeEEEEeCCCCeEEEEeccCC
Q 001039 888 AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSG---ERVLTASHDGTVKMWDVRTDTCVATVGRCS 964 (1179)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~ 964 (1179)
.++.|++.|+||+.+|.+++|+..+...+.++.+|...+.++.|++. ..+++|+.||++++|++.+...+..+.+|.
T Consensus 182 ~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~ 261 (459)
T KOG0272|consen 182 SFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHL 261 (459)
T ss_pred EeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcch
Confidence 57999999999999999999999999999999999999999999954 479999999999999999999999999999
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE--cCCEEEEEeCCCcEEEEEccCCeeeEEe
Q 001039 965 SAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVL 1042 (1179)
Q Consensus 965 ~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 1042 (1179)
..|..++|+|+|++|++++.|.+-++||++++..+....||...|.+++| +|..+++|+.|..-+|||+++|.++..+
T Consensus 262 ~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L 341 (459)
T KOG0272|consen 262 ARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFL 341 (459)
T ss_pred hhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEe
Confidence 99999999999999999999999999999999999888999999999999 5669999999999999999999999999
Q ss_pred ecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ec-CCCEEEEEECCCcEEEEeCC
Q 001039 1043 ACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NA-GDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1043 ~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~-dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
.+|..+|.+++|+|+|..+||||.|++++|||++. ...+..+.+|.+-|..+ +| .|.+|++++.|+++++|...
T Consensus 342 ~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~---r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 342 AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRM---RSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred cccccceeeEeECCCceEEeecCCCCcEEEeeecc---cccceecccccchhhheEecccCCeEEEEcccCcceeeecCC
Confidence 99999999999999999999999999999999998 56688889999999666 66 78999999999999999976
Q ss_pred CCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001039 1120 QERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1174 (1179)
Q Consensus 1120 ~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWd 1174 (1179)
.|.+++.+.||.+.|.+++.++|+++++|++.|.++++|.
T Consensus 419 ---------------~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 419 ---------------TWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ---------------CcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 3588999999999999999999999999999999999996
No 9
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-36 Score=342.62 Aligned_cols=394 Identities=17% Similarity=0.298 Sum_probs=325.1
Q ss_pred Ccc-cc-cCCCCC--CCCCCCCCC----------cccccCCcceEEEEEccCCCceeeccCc-eEeeeCCCCCCCCCCCC
Q 001039 742 LSN-GM-PSPLSK--DATNDDQQP----------AEASGIGRSWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRK 806 (1179)
Q Consensus 742 ~~~-~~-fSP~g~--~~~~~~~~~----------~~~~gh~~~i~~~~fSpdg~~las~~~d-I~vWd~~~~~~~~~~~~ 806 (1179)
.+| ++ .||+|. .+.++.+.. +....-.+++-++.|||||+.+|.|.++ +.+|........ ..
T Consensus 56 ~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~-~~-- 132 (893)
T KOG0291|consen 56 YNITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKN-EF-- 132 (893)
T ss_pred CceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCcEEEEEecceeEEEecCcchhc-cc--
Confidence 345 55 699998 222333332 2222334778889999999999999998 999997654321 00
Q ss_pred CCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccE
Q 001039 807 QDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTV 886 (1179)
Q Consensus 807 ~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v 886 (1179)
..-...++..||...|+++.|+ .|.++|++||.|.++++|+++.........+.+|...|
T Consensus 133 --------~pFvl~r~~~g~fddi~si~Ws------------~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~V 192 (893)
T KOG0291|consen 133 --------NPFVLHRTYLGHFDDITSIDWS------------DDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYV 192 (893)
T ss_pred --------CcceEeeeecCCccceeEEEec------------cCCceEEeccccceEEEEEeccccccceEeccCCCcce
Confidence 0112557889999999999998 89999999999999999998855555567899999998
Q ss_pred EE--EecCCCEEEEEeCCCcEEEEECCC-----------------------CeE-----E------EEeecCCCcEEEEE
Q 001039 887 RA--INSDRGKVVSGSDDQSVLVWDKQT-----------------------SQL-----L------EELKGHDAQVSCVR 930 (1179)
Q Consensus 887 ~~--~s~d~~~l~sgs~dg~I~iwd~~t-----------------------~~~-----~------~~~~~h~~~V~~l~ 930 (1179)
.+ |..+...+++.+.||.+.+|.... ++. . .-+......+++.+
T Consensus 193 vacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~ 272 (893)
T KOG0291|consen 193 VACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAA 272 (893)
T ss_pred EEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeee
Confidence 84 378888999999999999997651 111 0 11122336789999
Q ss_pred EeC-CCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC-CeEEEEeCCCCceeEEeecCCCC
Q 001039 931 MLS-GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD-AVANIWDIRAGRQMHKFLGHTKW 1008 (1179)
Q Consensus 931 ~s~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~d-g~I~iwD~~~~~~~~~~~~~~~~ 1008 (1179)
|+. .+.+++|-..|...+|++..-.+++.+.-....|..++|+..|.++|.|+.. |.+.+|+..+..-+.+.++|...
T Consensus 273 fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~ 352 (893)
T KOG0291|consen 273 FHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDR 352 (893)
T ss_pred ccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccc
Confidence 995 5678888899999999999999999998888899999999999999998864 89999999999889999999999
Q ss_pred eEEEEEcCC--EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEe
Q 001039 1009 IRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKN 1086 (1179)
Q Consensus 1009 I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~ 1086 (1179)
+++++++++ ++++|++||.|+|||..+|-|..++..|.+.|+.+.|+..|+.+++.+-||+|+.||+.. .+..++
T Consensus 353 i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR---YrNfRT 429 (893)
T KOG0291|consen 353 ITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR---YRNFRT 429 (893)
T ss_pred eeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc---cceeee
Confidence 999999766 999999999999999999999999999999999999999999999999999999999998 455555
Q ss_pred eccc---CceEEEEecCCCEEEEEECCC-cEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEE
Q 001039 1087 VTIH---SSAILSINAGDHWLGIGAADN-SMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRIC 1162 (1179)
Q Consensus 1087 ~~~h---~~~i~sis~dg~~lasgs~Dg-~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~La 1162 (1179)
+... +-...++.|.|.++.+|+.|. .|.+|+++ +| +++..+.||.++|.+++|+|+|..||
T Consensus 430 ft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q---------TG------qllDiLsGHEgPVs~l~f~~~~~~La 494 (893)
T KOG0291|consen 430 FTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ---------TG------QLLDILSGHEGPVSGLSFSPDGSLLA 494 (893)
T ss_pred ecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEee---------cC------eeeehhcCCCCcceeeEEccccCeEE
Confidence 5433 333455578899999999875 69999999 45 77888899999999999999999999
Q ss_pred EEeCCCcEEEEECC
Q 001039 1163 SGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1163 sgs~Dg~I~vWdv~ 1176 (1179)
|||.|.+||+||+-
T Consensus 495 S~SWDkTVRiW~if 508 (893)
T KOG0291|consen 495 SGSWDKTVRIWDIF 508 (893)
T ss_pred eccccceEEEEEee
Confidence 99999999999974
No 10
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.8e-38 Score=354.13 Aligned_cols=364 Identities=18% Similarity=0.354 Sum_probs=306.7
Q ss_pred cCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceec
Q 001039 766 GIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWD 843 (1179)
Q Consensus 766 gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~ 843 (1179)
-|..+++.++|+|.|..+|+|+.| |+|||+..+. +.+.|+||.|.|.++.|+|.
T Consensus 103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~-------------------~th~fkG~gGvVssl~F~~~----- 158 (775)
T KOG0319|consen 103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY-------------------CTHSFKGHGGVVSSLLFHPH----- 158 (775)
T ss_pred ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE-------------------EEEEecCCCceEEEEEeCCc-----
Confidence 389999999999999999999999 9999999877 89999999999999999963
Q ss_pred cccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCe-------
Q 001039 844 LVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQ------- 914 (1179)
Q Consensus 844 ~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~------- 914 (1179)
.....|++|+.|++|++||+.... .+...+..|...|+++ ++|+..+++++.|..+.+||+.+.+
T Consensus 159 -----~~~~lL~sg~~D~~v~vwnl~~~~-tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ 232 (775)
T KOG0319|consen 159 -----WNRWLLASGATDGTVRVWNLNDKR-TCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPL 232 (775)
T ss_pred -----cchhheeecCCCceEEEEEcccCc-hHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheech
Confidence 344678999999999999987333 3567788888888854 6777777777777777777653211
Q ss_pred ---------------------------------------E----------------------------------------
Q 001039 915 ---------------------------------------L---------------------------------------- 915 (1179)
Q Consensus 915 ---------------------------------------~---------------------------------------- 915 (1179)
+
T Consensus 233 ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 233 YESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred hhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccc
Confidence 0
Q ss_pred ---EEEeecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 001039 916 ---LEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANI 990 (1179)
Q Consensus 916 ---~~~~~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~i 990 (1179)
.+.+-|..+.|.+++|. ..+++++++..+.+++|+..+..+. .+.+|...|.++....+|.+|++|+.|.++++
T Consensus 313 l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svil 391 (775)
T KOG0319|consen 313 LTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVIL 391 (775)
T ss_pred cEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEE
Confidence 01112344556677776 4678999999999999998888776 77899999999997778899999999999999
Q ss_pred EeCCCC----ceeEEeecCCCCeEEEEEc---CCEEEEEeCCCcEEEEEccCCee---------eEEeecCCcCEEEEEE
Q 001039 991 WDIRAG----RQMHKFLGHTKWIRSIRMD---RDTVITGSDDWTARMWSISRGTC---------DAVLACHAGPVQCVEY 1054 (1179)
Q Consensus 991 wD~~~~----~~~~~~~~~~~~I~sl~~~---~~~l~sgs~dg~I~iwd~~~~~~---------~~~~~~h~~~V~~l~~ 1054 (1179)
|.++++ .++....+|.+.|.+++.+ ...++++|.|+++++|++...+. ..+...|+..|+++++
T Consensus 392 Wr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai 471 (775)
T KOG0319|consen 392 WRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI 471 (775)
T ss_pred EEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe
Confidence 987443 3455678999999999984 34999999999999999976221 1133479999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCc
Q 001039 1055 SSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSK 1132 (1179)
Q Consensus 1055 spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~ 1132 (1179)
+|+.+.++|||.|.+.+||++.. ......+.+|...++++ ++..+.+|++|.|++|+||.+.+.
T Consensus 472 a~ndkLiAT~SqDktaKiW~le~---~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f----------- 537 (775)
T KOG0319|consen 472 APNDKLIATGSQDKTAKIWDLEQ---LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF----------- 537 (775)
T ss_pred cCCCceEEecccccceeeecccC---ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc-----------
Confidence 99999999999999999999996 78888999999999887 578889999999999999999833
Q ss_pred cccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1133 MSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1133 ~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
.|+.++.||...|..+.|-.+|+.|+||+.||.|++|+++|+
T Consensus 538 ----SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 538 ----SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN 579 (775)
T ss_pred ----eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence 899999999999999999999999999999999999999987
No 11
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.1e-36 Score=339.07 Aligned_cols=371 Identities=15% Similarity=0.249 Sum_probs=316.4
Q ss_pred cccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeeccc
Q 001039 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1179)
Q Consensus 762 ~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~ 839 (1179)
.+..||-..++++.||.|.+++++|+.| +|+|+++.... -..+.+.||++.|.+.-|.
T Consensus 139 r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~-----------------~~~~~l~gHkd~VvacfF~--- 198 (893)
T KOG0291|consen 139 RTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN-----------------LFTYALNGHKDYVVACFFG--- 198 (893)
T ss_pred eeecCCccceeEEEeccCCceEEeccccceEEEEEeccccc-----------------cceEeccCCCcceEEEEec---
Confidence 4458999999999999999999999999 99999986552 1467899999999999887
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCC----------------------ce-----eEEE-----eccccccEE
Q 001039 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG----------------------SE-----LRAT-----LKGHTRTVR 887 (1179)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~----------------------~~-----~~~~-----l~~h~~~v~ 887 (1179)
.|...++|.+.||.+.+|..+... .+ .... +......|+
T Consensus 199 ---------~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvt 269 (893)
T KOG0291|consen 199 ---------ANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVT 269 (893)
T ss_pred ---------cCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeeccccccee
Confidence 788889999999999999865110 00 0001 111224455
Q ss_pred E--EecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcC-CeEEEEeCCCCeEEEEeccC
Q 001039 888 A--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHD-GTVKMWDVRTDTCVATVGRC 963 (1179)
Q Consensus 888 ~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~d-g~I~iwd~~~~~~~~~~~~~ 963 (1179)
| +++..+.|++|-..|...+|++..-.+++.+.-...+|..++|+ .|+.++.|+.. |.+-+|+..+...+...++|
T Consensus 270 aa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH 349 (893)
T KOG0291|consen 270 AAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH 349 (893)
T ss_pred eeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccc
Confidence 4 46777889999999999999999999999999888999999999 79999988764 89999999999988888999
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE--cCCEEEEEeCCCcEEEEEccCCeeeEE
Q 001039 964 SSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAV 1041 (1179)
Q Consensus 964 ~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~ 1041 (1179)
...+++++++|||+++++|+.||.|++||..+|-|..++..|++.|+.+.| .++.+++.+-||+|+.||+......++
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRT 429 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRT 429 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeee
Confidence 999999999999999999999999999999999999999999999999999 577999999999999999999999888
Q ss_pred eecC-CcCEEEEEEecCCCEEEEEeCCC-cEEEEEcCCCCcceEEEeecccCceEEE--EecCCCEEEEEECCCcEEEEe
Q 001039 1042 LACH-AGPVQCVEYSSSDRGIITGSSDG-LLRFWENDDAGGIKCVKNVTIHSSAILS--INAGDHWLGIGAADNSMSLFH 1117 (1179)
Q Consensus 1042 ~~~h-~~~V~~l~~spdg~~l~sgs~Dg-~I~iwd~~~~~~~~~~~~~~~h~~~i~s--is~dg~~lasgs~Dg~I~iwd 1117 (1179)
+... .....|++..|.|..+++|+.|. .|.+|++.+ .+.+..+.||.++|.+ ++|++..||+||+|.+|++||
T Consensus 430 ft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qT---GqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 430 FTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQT---GQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred ecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeec---CeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence 8743 34567889999999999999887 499999999 5777888899999975 689999999999999999999
Q ss_pred CCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 001039 1118 RPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATINI 1179 (1179)
Q Consensus 1118 ~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg~ 1179 (1179)
+-.. .| ... .-.+...+.+++|+|||+.||+++-||.|.+||++.++
T Consensus 507 if~s-------~~-------~vE-tl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 507 IFSS-------SG-------TVE-TLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred eecc-------Cc-------eee-eEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence 8633 11 111 22455679999999999999999999999999998653
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-35 Score=325.13 Aligned_cols=385 Identities=17% Similarity=0.254 Sum_probs=305.3
Q ss_pred ccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCC---------CCCCCCCCCC------------------cc
Q 001039 765 SGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGT---------PRKQDSTAGG------------------KK 815 (1179)
Q Consensus 765 ~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~---------~~~~~~~~~~------------------~~ 815 (1179)
..|.-.++...|||.|.|+|+|... ||+||....+..-+ .+........ -+
T Consensus 56 tEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D 135 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD 135 (603)
T ss_pred ccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec
Confidence 4454445555899999999888766 99999876332111 1100000000 12
Q ss_pred cccceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ecCC
Q 001039 816 IQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDR 893 (1179)
Q Consensus 816 ~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d~ 893 (1179)
....+..+.||...|++++|-| ...-.++||++|++|.+|+ ....+...++..|..-|.|+ +|||
T Consensus 136 SG~SvGei~GhSr~ins~~~Kp-----------sRPfRi~T~sdDn~v~ffe--GPPFKFk~s~r~HskFV~~VRysPDG 202 (603)
T KOG0318|consen 136 SGNSVGEITGHSRRINSVDFKP-----------SRPFRIATGSDDNTVAFFE--GPPFKFKSSFREHSKFVNCVRYSPDG 202 (603)
T ss_pred CCCccceeeccceeEeeeeccC-----------CCceEEEeccCCCeEEEee--CCCeeeeecccccccceeeEEECCCC
Confidence 3456778899999999999974 2344789999999999998 45667778889999999986 9999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEee---cCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEE-----------
Q 001039 894 GKVVSGSDDQSVLVWDKQTSQLLEELK---GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVA----------- 958 (1179)
Q Consensus 894 ~~l~sgs~dg~I~iwd~~t~~~~~~~~---~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~----------- 958 (1179)
.++++++.||++.+||-.+|+.+..+. +|.+.|.+++|+ |+..+++++.|.+++|||+.++++++
T Consensus 203 ~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dq 282 (603)
T KOG0318|consen 203 SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQ 282 (603)
T ss_pred CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhce
Confidence 999999999999999999999999998 899999999999 78899999999999999987764332
Q ss_pred --------------------------------EeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe-ecC
Q 001039 959 --------------------------------TVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKF-LGH 1005 (1179)
Q Consensus 959 --------------------------------~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~-~~~ 1005 (1179)
.+.+|...|+++..++++++|++|+.||.|.-||..++..-+.. .+|
T Consensus 283 qvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h 362 (603)
T KOG0318|consen 283 QVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGH 362 (603)
T ss_pred EEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccc
Confidence 23567888999999999999999999999999999988765543 689
Q ss_pred CCCeEEEEEcC-CEEEEEeCCCcEEEEEccCCee-------------------------------eEEeecC--------
Q 001039 1006 TKWIRSIRMDR-DTVITGSDDWTARMWSISRGTC-------------------------------DAVLACH-------- 1045 (1179)
Q Consensus 1006 ~~~I~sl~~~~-~~l~sgs~dg~I~iwd~~~~~~-------------------------------~~~~~~h-------- 1045 (1179)
...|.+++.+. +.+++.+.|.++++.++..+.. +..++.+
T Consensus 363 ~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~ 442 (603)
T KOG0318|consen 363 TNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPI 442 (603)
T ss_pred cceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecc
Confidence 99999999976 7899999999999997642110 0011111
Q ss_pred CcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCc
Q 001039 1046 AGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERL 1123 (1179)
Q Consensus 1046 ~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~ 1123 (1179)
.-...+++++|+++.++.|+.||.|++|.+..... ........|...++++ |||+.+||+|...+.+.+||+.++..
T Consensus 443 ~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l-~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 443 GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL-KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV 521 (603)
T ss_pred ccccceEEEcCCCCEEEEecccceEEEEEecCCcc-cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce
Confidence 11356899999999999999999999999987543 3343455688888666 89999999999999999999985532
Q ss_pred CcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001039 1124 GGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1124 ~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
....+.-|++.|.|++|+|+..++||||-|.+|.||+++.
T Consensus 522 --------------~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 522 --------------KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred --------------ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence 1223446999999999999999999999999999999874
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.7e-35 Score=302.97 Aligned_cols=281 Identities=25% Similarity=0.397 Sum_probs=255.7
Q ss_pred eEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE--EEecCCCEEE
Q 001039 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVV 897 (1179)
Q Consensus 820 ~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~l~ 897 (1179)
.++|+||.+.|.++.|+ +|.++++++|.||.+.|||.-+ ....+.+.-....|. +++|.|+++|
T Consensus 48 rr~LkGH~~Ki~~~~ws------------~Dsr~ivSaSqDGklIvWDs~T--tnK~haipl~s~WVMtCA~sPSg~~VA 113 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWS------------TDSRRIVSASQDGKLIVWDSFT--TNKVHAIPLPSSWVMTCAYSPSGNFVA 113 (343)
T ss_pred EEEecccccceeeeEec------------CCcCeEEeeccCCeEEEEEccc--ccceeEEecCceeEEEEEECCCCCeEE
Confidence 47899999999999998 8999999999999999999653 333455555667776 5799999999
Q ss_pred EEeCCCcEEEEECCCC------eEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEE
Q 001039 898 SGSDDQSVLVWDKQTS------QLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCME 971 (1179)
Q Consensus 898 sgs~dg~I~iwd~~t~------~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~ 971 (1179)
+|+-|+...||++.+. +..+.+.+|.+.+.|+.|.++..|++++.|.++.+||+++|+.+..+.+|.+.|.+++
T Consensus 114 cGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~sls 193 (343)
T KOG0286|consen 114 CGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLS 193 (343)
T ss_pred ecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEe
Confidence 9999999999999865 4566789999999999999999999999999999999999999999999999999999
Q ss_pred EcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE--cCCEEEEEeCCCcEEEEEccCCeeeEEeec--CC
Q 001039 972 YDD-STGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLAC--HA 1046 (1179)
Q Consensus 972 ~sp-~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--h~ 1046 (1179)
++| +++.+++|+.|+..++||+|.+.+++.|.+|...|+++.| ++.-+++|+.|++.++||++..+.+..+.. ..
T Consensus 194 l~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~ 273 (343)
T KOG0286|consen 194 LSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSII 273 (343)
T ss_pred cCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCccc
Confidence 999 9999999999999999999999999999999999999999 456999999999999999999998888873 24
Q ss_pred cCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEe
Q 001039 1047 GPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFH 1117 (1179)
Q Consensus 1047 ~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd 1117 (1179)
.+|++++||..|++|.+|..|.++.+||.-. .+.+..+.+|...|.++ +|||..+++|++|.+++||.
T Consensus 274 ~gitSv~FS~SGRlLfagy~d~~c~vWDtlk---~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 274 CGITSVAFSKSGRLLFAGYDDFTCNVWDTLK---GERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCceeEEEcccccEEEeeecCCceeEeeccc---cceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 5799999999999999999999999999887 46677788999999877 79999999999999999994
No 14
>KOG2127 consensus Calmodulin-binding protein CRAG, contains DENN domain [Signal transduction mechanisms]
Probab=100.00 E-value=1e-37 Score=373.70 Aligned_cols=343 Identities=26% Similarity=0.389 Sum_probs=256.1
Q ss_pred eeEEeCCCCCCCCCCCcchHHHhccCChhhHHHHHHHHhccccEEEEeCCcchHHHHHHHHHHcccccCCCceeecccch
Q 001039 189 LLSVEAPPKEGLPHADISFQPLVQLLDVDNLITLFTAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLLFF 268 (1179)
Q Consensus 189 ~~~~~~p~~~~lp~~~~~~~~l~~~l~~~~~~~l~~~~L~E~~il~~s~~~~~ls~~~~al~~ll~P~~w~~~~IP~lP~ 268 (1179)
.+.+..|.+..+|+.+..+..++++||++|+|+++.++|+|+||+++|..+.+|+.++||++++||||+|||+|||++|.
T Consensus 5 ~i~l~~~~ds~lp~~~a~~~~~l~~l~~e~~l~~ll~~lteqkil~hslr~~~lt~v~e~~~s~~fp~~wq~pyip~~pl 84 (1020)
T KOG2127|consen 5 NILLPQPADSPLPLSGADLHLLLQCLGPENVLQLLLLALTEQKILIHSLRPALLTAVAEAFVALLFPFHWQCPYIPLCPL 84 (1020)
T ss_pred cccccCccCCCCCcCcchHHHHHHhhChHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcccceecCCccccccc
Confidence 45666889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCcceEEeccCCCCccccCCCcEEEEEcCCCeeeCCC-----CCCCCCchhhhhhHHHHHHhcCCCccccccc
Q 001039 269 SGVDYIDAPTPYMMGLHSGVDTSNLAMDGVVVVDLEYNRICTTE-----EIPPIPEPELSSLRGDILKLLYPNVVGIDRM 343 (1179)
Q Consensus 269 ~l~~~l~aP~P~iiGi~~~~~~~~~~~~~~~~vdlD~~~i~~~~-----~~~~lP~~~~~~l~~~l~~~l~~~~~~~~~~ 343 (1179)
.|+|+|+||+|||||+|+.+.....+++||+++|||+|+|...+ +.+.+|....+.|++++......--...+..
T Consensus 85 ~la~vl~aP~pf~~g~~s~~f~~~~pp~dv~~~dldt~~i~~~~~~~~~s~~~lp~~~a~~l~~~l~~l~~~l~~~y~s~ 164 (1020)
T KOG2127|consen 85 GLADVLHAPLPFLMGVDSRYFELYDPPDDVTCIDLDTNTISYSESTDDLSPPDLPKRAAKTLIQTLTSLQLHLDLHYAST 164 (1020)
T ss_pred hhcccccCCcccccCCChhhhhccCCCccceEEecCCCceeeeeccccCCcccCchhHHHHHHHHHHHHHhhhhcccccc
Confidence 99999999999999999997666688899999999999999874 3577788888888888776553321111111
Q ss_pred CCCCCCcccccccCCCCchhhhHHHHHHHHHHHHHHHhhHHhcccccCccccChHHHhcccccCCCCCCchHHHHHHHHh
Q 001039 344 NAGGSSEHYSKVCSKPWGEEHDLQLRFIFLKFLASILGGYRNFIENTGTQVFNAQAFLKKRSRSTNQPPDPMITQFLDSQ 423 (1179)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~ir~~Fl~~~~~ll~~y~~~l~~~~~~~F~~~~Fl~~~~~~~~~~~~~F~~~f~~tq 423 (1179)
.. .......+.....+...++.+|+.+|++|++++|.|||+|++ .....++.++||++|.+. +.+||+++++||
T Consensus 165 ~~-~~~l~~~~~~~~l~~~~le~~iq~afl~f~asil~g~r~~l~-~~a~~~~~~~fL~sR~~s----~~~fy~~~~~Tq 238 (1020)
T KOG2127|consen 165 NS-STDLDFGIADRRLRRQKLECEIQQAFLQFMASILRGYRNFLR-EGATDVNLEGFLRSRDRS----SHKFYKQVLKTQ 238 (1020)
T ss_pred cc-ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh-cccccCChHHHHhhcchh----hhhHHHhcchhH
Confidence 11 111111111122245568899999999999999999999998 555667799999999988 559999999999
Q ss_pred HHHHHHHcccCCCCCchh------HHHHHHHHhccCCC-ceeecCC------CCCCCCccccCCCCCCCCCCCcceeccC
Q 001039 424 GFLDYLERGLGSDENNSN------LLDKLQDAIGRGQN-PTSILPS------SSAEPEVITISDPDIGTSGLGAKYTYDR 490 (1179)
Q Consensus 424 ~F~~Fie~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 490 (1179)
||.+|||+|+...+.+.. |.+++.......+. ++..+.. .+.+|+.... +.+.+..+.|+|+.
T Consensus 239 mf~~fieers~~s~~~~~~~ffd~~~ekv~~~~e~p~~~~~v~~~~~~ts~~~i~~~~~~~~----p~~g~~~~~~~~~~ 314 (1020)
T KOG2127|consen 239 MFHRFIEERSFVSDDNFALMFFDTCSEKVNGMLESPRRPTVVQLEERKTSHLHITPPRMVAS----PNGGGSTMAYIYGC 314 (1020)
T ss_pred HHHHHHHHHhcccchHhHhhhHHHHHHHHcccccCCccCcceeeccccccceeccchhhccC----CCCCCCchhhhhcc
Confidence 999999999976544322 56665544433322 2222211 1344443332 56778899999999
Q ss_pred CCcCcchhhHHHHhhhhhh-ccCCCcccCCCCCCCcccccccCccccCChHHHHHhhhc
Q 001039 491 FPSNVRTEEQEEKRRQILA-SASGSFEYSGKLNSPPSMLVSKDSKDSLSPIERAAERDR 548 (1179)
Q Consensus 491 fp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~r~~e~~~ 548 (1179)
|+. ++.++..-.++...+ +.+. +.++.|..|.. ++++.+..-.++.+++.+
T Consensus 315 F~~-lr~~~~~~~~~ts~~~~~s~---~~~~sp~~~~~---~~~k~~~~~~q~f~~~~~ 366 (1020)
T KOG2127|consen 315 FSH-LRAELLADCGKTSEVLPKSL---VSRSSPSSPDE---RLTKDENGLIQVFASKGS 366 (1020)
T ss_pred cch-hhHHHHHhhccccccccCCc---ccccCcccccc---ccccccccchHHHHhhhh
Confidence 996 554444323333322 1110 12577788876 577777776666666664
No 15
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.4e-35 Score=333.56 Aligned_cols=381 Identities=20% Similarity=0.349 Sum_probs=304.2
Q ss_pred CCCcccccCCcceEEEEEccCCCc--eeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEE
Q 001039 759 QQPAEASGIGRSWVQSMFSREASS--RSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALH 834 (1179)
Q Consensus 759 ~~~~~~~gh~~~i~~~~fSpdg~~--las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~ 834 (1179)
.....+.||+..|..+.|.|+-++ |++|..| |++||..+... +++++..|.+.|++++
T Consensus 138 ~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t------------------cl~~~~~H~S~vtsL~ 199 (775)
T KOG0319|consen 138 YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT------------------CLHTMILHKSAVTSLA 199 (775)
T ss_pred EEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch------------------HHHHHHhhhhheeeee
Confidence 345567888888888899999875 7888888 99999986652 6888999999999999
Q ss_pred eeccc------------ceecc-----------------ccccCC-----CCEEEEEeCCCcEEEEcCCCCC--------
Q 001039 835 CVTKR------------EVWDL-----------------VGDRED-----AGFFISGSTDCLVKIWDPSLRG-------- 872 (1179)
Q Consensus 835 ~s~~~------------~~~~~-----------------~~~s~d-----~~~Lasgs~Dg~I~lWd~~~~~-------- 872 (1179)
|+++. .+|+. +..-++ |.++.|+|.+|.+++||.+...
T Consensus 200 ~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~ 279 (775)
T KOG0319|consen 200 FSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQS 279 (775)
T ss_pred eccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccC
Confidence 98431 11211 111112 3455566666666666543100
Q ss_pred --ce-------------------------------eEEEeccccccEEEE---ecCCCEEEEEeCCCcEEEEECCCCeEE
Q 001039 873 --SE-------------------------------LRATLKGHTRTVRAI---NSDRGKVVSGSDDQSVLVWDKQTSQLL 916 (1179)
Q Consensus 873 --~~-------------------------------~~~~l~~h~~~v~~~---s~d~~~l~sgs~dg~I~iwd~~t~~~~ 916 (1179)
.+ +...+-|..+.|..+ .|+.++++.++..+.+++++..+..+.
T Consensus 280 ~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ 359 (775)
T KOG0319|consen 280 DSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ 359 (775)
T ss_pred CchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE
Confidence 00 001111222233322 466788999999999999998877775
Q ss_pred EEeecCCCcEEEEE-EeCCCEEEEEEcCCeEEEEeCCCCe----EEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEE
Q 001039 917 EELKGHDAQVSCVR-MLSGERVLTASHDGTVKMWDVRTDT----CVATVGRCSSAVLCMEYDDST-GILAAGGRDAVANI 990 (1179)
Q Consensus 917 ~~~~~h~~~V~~l~-~s~~~~l~sgs~dg~I~iwd~~~~~----~~~~~~~~~~~v~~l~~sp~~-~~l~sgs~dg~I~i 990 (1179)
.+.||+..|.++. |+.|..+++|+.|.++++|.++++. ++....+|.+.|.+++++..+ .++++++.|+++++
T Consensus 360 -ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~ 438 (775)
T KOG0319|consen 360 -IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL 438 (775)
T ss_pred -EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence 8899999999998 5578899999999999999885443 445567899999999997754 57899999999999
Q ss_pred EeCCCCce-----eE----EeecCCCCeEEEEEcCC--EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCC
Q 001039 991 WDIRAGRQ-----MH----KFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDR 1059 (1179)
Q Consensus 991 wD~~~~~~-----~~----~~~~~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~ 1059 (1179)
|++...+. .. ....|...|+++++.++ .+++||.|.+.++|++.......++.+|...|+++.|++..+
T Consensus 439 W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq 518 (775)
T KOG0319|consen 439 WDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQ 518 (775)
T ss_pred ecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccc
Confidence 99986322 11 23479999999999665 999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEe--cCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccce
Q 001039 1060 GIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSIN--AGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQ 1137 (1179)
Q Consensus 1060 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis--~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~ 1137 (1179)
.++|+|.|++|+||.+.+ ..|++++.||+..|...+ .+|+.|++++.||-|++|++++. .
T Consensus 519 ~laT~SgD~TvKIW~is~---fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~---------------e 580 (775)
T KOG0319|consen 519 LLATCSGDKTVKIWSIST---FSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN---------------E 580 (775)
T ss_pred eeEeccCCceEEEEEecc---ceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch---------------h
Confidence 999999999999999999 899999999999997764 68999999999999999999844 7
Q ss_pred eeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1138 LYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1138 ~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
|..++..|...|++++-++++..++|||.||.|.+|.=.
T Consensus 581 C~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 581 CEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred hhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence 899999999999999999999999999999999999643
No 16
>smart00799 DENN Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN. The DENN domain is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=100.00 E-value=4.5e-36 Score=309.18 Aligned_cols=180 Identities=43% Similarity=0.746 Sum_probs=161.3
Q ss_pred CCeEEEEEcCCChHHHHHHHHHHHHHHhhccCCCCccHHHHHHhhcccCCCCCCCCceEEeeeccc-eeEEeCCCCCCCC
Q 001039 123 ADKCICLVSRSPSFRILRNALEEIYSLCFLSDGSSKPLWDVISHLVSNVPLPTPGKNRVLFAIENC-LLSVEAPPKEGLP 201 (1179)
Q Consensus 123 ~~~~icllS~~p~~~~f~~~L~~i~~~~~~~~~~~~~~~~~i~~~l~~~p~P~pg~~~~~~~~~~~-~~~~~~p~~~~lp 201 (1179)
+|||+|++||+|||++||++|+.+++.... +...++|.++.++. .|+|.||++.+.+.++.. ...+++|....+|
T Consensus 1 ~p~~icilS~~P~~~~f~~~L~~l~~~~~~--~~~~~~e~~~~~~~--~p~P~pg~~~~~~~~~~~~~~~~~~p~~~~lp 76 (183)
T smart00799 1 APKCICILSRLPFFELFRKILNELYRLLPS--SSNLPLELLISLLL--YPVPPPGGSLVLVSLGPGDLIELQRPLDSSLP 76 (183)
T ss_pred CCeEEEEEeCCcHHHHHHHHHHHHHHHHcc--CccchHHHHHHHhC--CCCCcCCCeEEEEEcCCCCcEEEECCCCCCCC
Confidence 489999999999999999999999998763 44688888887765 478999999988877543 3567899999999
Q ss_pred CCCcchHHHhccCChhhHHHHHHHHhccccEEEEeCCcchHHHHHHHHHHcccccCCCceeecccchhhhhhccCCcceE
Q 001039 202 HADISFQPLVQLLDVDNLITLFTAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYM 281 (1179)
Q Consensus 202 ~~~~~~~~l~~~l~~~~~~~l~~~~L~E~~il~~s~~~~~ls~~~~al~~ll~P~~w~~~~IP~lP~~l~~~l~aP~P~i 281 (1179)
..++++..+|++|+++|++.++.++|+|+||||+|+++++|+.+++|+.+|||||+|+|+|||+||.+++|+++||+|||
T Consensus 77 ~~~~~~~~lf~~l~~~~i~~l~~~~LlE~~Ii~~s~~~~~ls~~~~~l~~ll~Pf~w~~~~iP~lp~~l~~~l~aP~P~i 156 (183)
T smart00799 77 LIDFSLHELFECLGVENILQLFAALLLERRIIFTSSNLSTLSAVIEALLALLYPFVWQHIYIPILPASLLDVLSAPTPFI 156 (183)
T ss_pred CCCccHHHHHHhCCHHHHHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHHhCCccCCceEEEECCHHHHHHhcCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCcc--ccCCCcEEEEEcCCC
Q 001039 282 MGLHSGVDTS--NLAMDGVVVVDLEYN 306 (1179)
Q Consensus 282 iGi~~~~~~~--~~~~~~~~~vdlD~~ 306 (1179)
||++++.... ....+|+++||||+|
T Consensus 157 iGv~~~~~~~~~~~~~~~vv~vDlD~~ 183 (183)
T smart00799 157 IGVHSSYFEEVKELPDEDVVVVDLDTG 183 (183)
T ss_pred EEechhHhHHhhccCCCCEEEEECCCC
Confidence 9999976332 223467999999987
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.5e-34 Score=311.23 Aligned_cols=334 Identities=22% Similarity=0.320 Sum_probs=283.4
Q ss_pred ccccCCcceEEEEEccCCC-ceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeeccc
Q 001039 763 EASGIGRSWVQSMFSREAS-SRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1179)
Q Consensus 763 ~~~gh~~~i~~~~fSpdg~-~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~ 839 (1179)
...+|...|.+++|+|-.. .+|+|+.+ .|+|++......++.... .........+. ...+..|++++|+
T Consensus 173 kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~----lrh~~~~~~~s-~~~nkdVT~L~Wn--- 244 (524)
T KOG0273|consen 173 KVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLV----LRHCIREGGKS-VPSNKDVTSLDWN--- 244 (524)
T ss_pred eeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhh----hhhhhhhhccc-CCccCCcceEEec---
Confidence 3445999999999999776 88898888 999998752211110000 00000000000 0123579999998
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeEEE
Q 001039 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLE 917 (1179)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~ 917 (1179)
.+|..||+|+.||.+++|+.. +.+..++..|.++|.++ +.+|++|++++.||++.+||..+|+..+
T Consensus 245 ---------~~G~~LatG~~~G~~riw~~~---G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 245 ---------NDGTLLATGSEDGEARIWNKD---GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred ---------CCCCeEEEeecCcEEEEEecC---chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE
Confidence 899999999999999999954 56668899999999976 7889999999999999999999999999
Q ss_pred EeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 001039 918 ELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR 997 (1179)
Q Consensus 918 ~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~ 997 (1179)
.+.-|..+...+.|-+.+.+++++.||.|+++.+....++.++.+|.+.|.++.|+|.|.+|++++.|++++||......
T Consensus 313 ~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred eeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence 99999988888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeecCCCCeEEEEEcCC-----------EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeC
Q 001039 998 QMHKFLGHTKWIRSIRMDRD-----------TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSS 1066 (1179)
Q Consensus 998 ~~~~~~~~~~~I~sl~~~~~-----------~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~ 1066 (1179)
....+.+|...|..+.|+|. .+++++.|++|++||+..+.++.++..|..+|++++|+|+|+++|+|+.
T Consensus 393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~ 472 (524)
T KOG0273|consen 393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL 472 (524)
T ss_pred chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCC
Confidence 99999999999999999542 7999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEcCCCCcceEEEeecccCc-eEEEEecCCCEEEEEECCCcEEEEeCC
Q 001039 1067 DGLLRFWENDDAGGIKCVKNVTIHSS-AILSINAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1067 Dg~I~iwd~~~~~~~~~~~~~~~h~~-~i~sis~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
||.|.+|++++ .+.++...+... .-++++.+|.+|.++-.||.+++.|+.
T Consensus 473 dg~V~iws~~~---~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 473 DGCVHIWSTKT---GKLVKSYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCeeEeccccc---hheeEeecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 99999999998 455665554443 235567899999999999999999874
No 18
>PF02141 DENN: DENN (AEX-3) domain; InterPro: IPR001194 The human serine- and leucine-rich DENN protein possesses a RGD cellular adhesion motif and a leucine-zipper-like motif associated with protein dimerization, and shows partial homology to the receptor binding domain of tumor necrosis factor alpha. DENN is virtually identical to MADD, a human MAP kinase-activating death domain protein that interacts with type I tumor necrosis factor receptor. DENN displays significant homology to Rab3 GEP, a rat GDP/GTP exchange protein specific for Rab3 small G proteins implicated in intracellular vesicle trafficking. DENN also exhibits strong similarity to Caenorhabditis elegans AEX-3, which interacts with Rab3 to regulate synaptic vesicle release []. The DENN domain is always encircled on both sides by more divergent domains, known as uDENN (IPR005113 from INTERPRO) and dDENN (IPR005112 from INTERPRO), which could play a key role in DENN function.; PDB: 3TW8_A.
Probab=100.00 E-value=1.3e-36 Score=317.64 Aligned_cols=183 Identities=45% Similarity=0.775 Sum_probs=129.5
Q ss_pred cCCeEEEEEcCCChHHHHHHHHHHHHHHhhccCCCCccHHHHHHhhcccCCCCCCCCceEEee-eccceeEEeCCCCCCC
Q 001039 122 FADKCICLVSRSPSFRILRNALEEIYSLCFLSDGSSKPLWDVISHLVSNVPLPTPGKNRVLFA-IENCLLSVEAPPKEGL 200 (1179)
Q Consensus 122 ~~~~~icllS~~p~~~~f~~~L~~i~~~~~~~~~~~~~~~~~i~~~l~~~p~P~pg~~~~~~~-~~~~~~~~~~p~~~~l 200 (1179)
|+|+|+|++||+|||++|+++|..+++.+... ...++++++.+++..+|+|.+|...+... .++..+.+..|....+
T Consensus 1 y~p~~~clvS~~p~~~~f~~~L~~i~~~~~~~--~~~~l~~~i~~~~~~~~~P~~g~~~~~~~~~~~~~~~~~~p~~~~l 78 (185)
T PF02141_consen 1 YVPKAICLVSRYPFFDLFREILKIIYNLYKSS--RINPLEQFISNLLYSIPLPPPGSTIVFFSPFKNEKIIFQRPSNNDL 78 (185)
T ss_dssp ----EEEEEESS--HHHHHHHHHHHHHHHHTT---HHHHHHHHHH-HHHS----TT-B--------------B---SSS-
T ss_pred CCceEEEEECCCcHHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHhcCCCCCCCcceeeecccccccccccCCCccCC
Confidence 78999999999999999999999999987643 23789999999999999999998877654 3556677888999999
Q ss_pred CCCCcchHHHhccCChhhHHHHHHHHhccccEEEEeCCcchHHHHHHHHHHcccccCCCceeecccchhhhhhccCCcce
Q 001039 201 PHADISFQPLVQLLDVDNLITLFTAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPY 280 (1179)
Q Consensus 201 p~~~~~~~~l~~~l~~~~~~~l~~~~L~E~~il~~s~~~~~ls~~~~al~~ll~P~~w~~~~IP~lP~~l~~~l~aP~P~ 280 (1179)
|..++++..||++|+++++++++.++|+|+||+|+|++++.||.+++|+.+|||||+|+|+|||+||.+++|+|+||+||
T Consensus 79 p~~~~~~~~lf~~l~~~~i~~l~~~lL~E~~Ii~~S~~~~~ls~~~~~l~~ll~Pf~w~~~~ip~LP~~l~~~l~aP~P~ 158 (185)
T PF02141_consen 79 PLSDFSLSPLFSCLSIDNILKLFSALLLERRIIFVSSNLSLLSSCVEALLSLLYPFQWQHVYIPVLPPSLLDYLEAPTPF 158 (185)
T ss_dssp --TSHHHHHHHHHS-HHHHHHHHHHHTTT-EEEEEES-HHHHHHHHHHHHHTTTTS---SEEESS--GGGGGGGG-SS-E
T ss_pred CccccchhHHHhcCCHHHHHHHHHHHHHhCCEEEEeCchhhHHHHHHHHHHHccCcccCceEEeecCHHHHhhcCCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCc-cccCCCcEEEEEcCCC
Q 001039 281 MMGLHSGVDT-SNLAMDGVVVVDLEYN 306 (1179)
Q Consensus 281 iiGi~~~~~~-~~~~~~~~~~vdlD~~ 306 (1179)
|||++++... ...+.+|+++||||+|
T Consensus 159 iiGv~~~~~~~~~~~~~~~v~VDLD~n 185 (185)
T PF02141_consen 159 IIGVHSSFFEILIDPPDDVVIVDLDTN 185 (185)
T ss_dssp EEEEECCCHHHHCS---S-EEEETTTT
T ss_pred EEEEechhhhhhcCCCCCEEEEECCCC
Confidence 9999998755 4566789999999997
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=289.56 Aligned_cols=282 Identities=24% Similarity=0.404 Sum_probs=259.6
Q ss_pred cccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeeccc
Q 001039 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1179)
Q Consensus 762 ~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~ 839 (1179)
..+.||...|.++.|++|++++++++.| +.|||.-|.. .++.+.-....|..++|+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn-------------------K~haipl~s~WVMtCA~s--- 106 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN-------------------KVHAIPLPSSWVMTCAYS--- 106 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc-------------------ceeEEecCceeEEEEEEC---
Confidence 5578999999999999999999999999 9999998876 677788888899999998
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCC----ceeEEEeccccccEEEE-ecCCCEEEEEeCCCcEEEEECCCCe
Q 001039 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG----SELRATLKGHTRTVRAI-NSDRGKVVSGSDDQSVLVWDKQTSQ 914 (1179)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~----~~~~~~l~~h~~~v~~~-s~d~~~l~sgs~dg~I~iwd~~t~~ 914 (1179)
|.|+++|.|+-|+...||++.... ....+.+.+|++-+.|. -.++..|++++.|.+..+||+++|+
T Consensus 107 ---------PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~ 177 (343)
T KOG0286|consen 107 ---------PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQ 177 (343)
T ss_pred ---------CCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccce
Confidence 899999999999999999987431 24556799999999876 4678899999999999999999999
Q ss_pred EEEEeecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 001039 915 LLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWD 992 (1179)
Q Consensus 915 ~~~~~~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD 992 (1179)
.+..+.+|.+.|.+++++ +++.+++|+.|+..++||++.+.+++++.+|.+.|.++.|.|+|.-+++|+.|++.++||
T Consensus 178 ~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyD 257 (343)
T KOG0286|consen 178 QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYD 257 (343)
T ss_pred EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEe
Confidence 999999999999999998 588999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeecC--CCCeEEEEE--cCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCC
Q 001039 993 IRAGRQMHKFLGH--TKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDG 1068 (1179)
Q Consensus 993 ~~~~~~~~~~~~~--~~~I~sl~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg 1068 (1179)
+|..+.+..+... ..+|++++| +|.+|++|..|.++.+||.-.++.+..+.+|++.|+++..+|||.-+++|+.|.
T Consensus 258 lRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs 337 (343)
T KOG0286|consen 258 LRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDS 337 (343)
T ss_pred ecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhH
Confidence 9999988887643 348899999 678999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEE
Q 001039 1069 LLRFWE 1074 (1179)
Q Consensus 1069 ~I~iwd 1074 (1179)
+++||.
T Consensus 338 ~lriW~ 343 (343)
T KOG0286|consen 338 TLRIWA 343 (343)
T ss_pred heeecC
Confidence 999994
No 20
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.9e-32 Score=299.96 Aligned_cols=369 Identities=17% Similarity=0.255 Sum_probs=293.0
Q ss_pred CCCCCCccccc-CCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEe---cccCc
Q 001039 756 NDDQQPAEASG-IGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIR---GHAGA 829 (1179)
Q Consensus 756 ~~~~~~~~~~g-h~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---gH~~~ 829 (1179)
|...+-....+ |++-+.++.|||||+.+|+.+.| |.+||=.+++ .+..+. +|++.
T Consensus 177 GPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge-------------------~vg~l~~~~aHkGs 237 (603)
T KOG0318|consen 177 GPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE-------------------KVGELEDSDAHKGS 237 (603)
T ss_pred CCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc-------------------EEEEecCCCCcccc
Confidence 34444444444 44555566999999999999999 9999999888 566666 89999
Q ss_pred eEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEecccc----ccEEEEecCCCEEEEEeCCCcE
Q 001039 830 ITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHT----RTVRAINSDRGKVVSGSDDQSV 905 (1179)
Q Consensus 830 V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~----~~v~~~s~d~~~l~sgs~dg~I 905 (1179)
|.+++|+ ||+..++|+|.|.+++|||+. ...+..++.-.. ..+-++-+ +..|++.+.+|+|
T Consensus 238 IfalsWs------------PDs~~~~T~SaDkt~KIWdVs--~~slv~t~~~~~~v~dqqvG~lWq-kd~lItVSl~G~i 302 (603)
T KOG0318|consen 238 IFALSWS------------PDSTQFLTVSADKTIKIWDVS--TNSLVSTWPMGSTVEDQQVGCLWQ-KDHLITVSLSGTI 302 (603)
T ss_pred EEEEEEC------------CCCceEEEecCCceEEEEEee--ccceEEEeecCCchhceEEEEEEe-CCeEEEEEcCcEE
Confidence 9999998 899999999999999999987 345555554322 23334444 8899999999999
Q ss_pred EEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEe-ccCCCcEEEEEEcCCCCEEEEEe
Q 001039 906 LVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV-GRCSSAVLCMEYDDSTGILAAGG 983 (1179)
Q Consensus 906 ~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~sgs 983 (1179)
..++...+..+..+.||...|+++..+ ++.+|++|+.||.|.-||..+|..-+.. +.|...|.+++.+..+. +++.+
T Consensus 303 n~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~t~g 381 (603)
T KOG0318|consen 303 NYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LFTIG 381 (603)
T ss_pred EEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCc-EEEEe
Confidence 999999999999999999999999999 7899999999999999999998876554 57899999999887665 56777
Q ss_pred CCCeEEEEeCCCCce--------------e-----------------EEeecCCC--------CeEEEEE--cCCEEEEE
Q 001039 984 RDAVANIWDIRAGRQ--------------M-----------------HKFLGHTK--------WIRSIRM--DRDTVITG 1022 (1179)
Q Consensus 984 ~dg~I~iwD~~~~~~--------------~-----------------~~~~~~~~--------~I~sl~~--~~~~l~sg 1022 (1179)
.|.++++.++..+.. + ..++.+.. ...++++ +++.++.|
T Consensus 382 ~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVG 461 (603)
T KOG0318|consen 382 WDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVG 461 (603)
T ss_pred cCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEe
Confidence 888999997743210 0 00111111 2234444 45699999
Q ss_pred eCCCcEEEEEccCCee--eEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--e
Q 001039 1023 SDDWTARMWSISRGTC--DAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--N 1098 (1179)
Q Consensus 1023 s~dg~I~iwd~~~~~~--~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s 1098 (1179)
+.||.|++|.+..+.. ......|.++|+++++|||+.+||+|...+.+.+||..+... ....+..|+..|.++ +
T Consensus 462 G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWs 539 (603)
T KOG0318|consen 462 GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWS 539 (603)
T ss_pred cccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeC
Confidence 9999999999987653 334567999999999999999999999999999999998542 444556688888766 7
Q ss_pred cCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1099 AGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1099 ~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
|+..++|+|+-|.+|.||++.... +.+....+|...|+.++|-. ...++|.|.|..|++|++.
T Consensus 540 P~n~~vATGSlDt~Viiysv~kP~--------------~~i~iknAH~~gVn~v~wld-e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 540 PNNKLVATGSLDTNVIIYSVKKPA--------------KHIIIKNAHLGGVNSVAWLD-ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred CCceEEEeccccceEEEEEccChh--------------hheEeccccccCceeEEEec-CceEEeccCcceeEEeccc
Confidence 999999999999999999997431 22444568888899999964 5679999999999999985
No 21
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.8e-33 Score=314.27 Aligned_cols=365 Identities=19% Similarity=0.316 Sum_probs=317.1
Q ss_pred CCCcccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEee
Q 001039 759 QQPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCV 836 (1179)
Q Consensus 759 ~~~~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s 836 (1179)
.-+....||.+.|+.+.|+..|..+|||+.| |.+||+-... -+..++||+..|+..-|.
T Consensus 98 ~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~-------------------Gl~rL~GHkd~iT~~~F~ 158 (888)
T KOG0306|consen 98 EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE-------------------GLFRLRGHKDSITQALFL 158 (888)
T ss_pred ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccce-------------------eeEEeecchHHHhHHhcc
Confidence 4566778999999999999999999999999 9999998665 577899999999999887
Q ss_pred cccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCC----
Q 001039 837 TKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQT---- 912 (1179)
Q Consensus 837 ~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t---- 912 (1179)
.+.+++++.|.|+.|++||++ ...+..+.-.|.+.++++.-+++.+++++.|+.+++|++..
T Consensus 159 ------------~~~~~lvS~sKDs~iK~WdL~--tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~ 224 (888)
T KOG0306|consen 159 ------------NGDSFLVSVSKDSMIKFWDLE--TQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDE 224 (888)
T ss_pred ------------CCCeEEEEeccCceEEEEecc--cceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeeccccc
Confidence 678999999999999999987 67777888899999999988889999999999999998710
Q ss_pred ------------C--------e----------------------------------------------------------
Q 001039 913 ------------S--------Q---------------------------------------------------------- 914 (1179)
Q Consensus 913 ------------~--------~---------------------------------------------------------- 914 (1179)
| +
T Consensus 225 ~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~ 304 (888)
T KOG0306|consen 225 KETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVE 304 (888)
T ss_pred ccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchh
Confidence 0 0
Q ss_pred ------------------------------E------------E------------------EEeecCCCcEEEEEEeCC
Q 001039 915 ------------------------------L------------L------------------EELKGHDAQVSCVRMLSG 934 (1179)
Q Consensus 915 ------------------------------~------------~------------------~~~~~h~~~V~~l~~s~~ 934 (1179)
. . .++.+|...|.+++++++
T Consensus 305 ~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d 384 (888)
T KOG0306|consen 305 KSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD 384 (888)
T ss_pred hhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC
Confidence 0 0 112357777888888877
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE
Q 001039 935 ERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM 1014 (1179)
Q Consensus 935 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~ 1014 (1179)
+.++..+..+.+++|+..+.++++++... .+.+..|-|.++++++|..+|.+.+||+.+...+.+...|.+.|++++.
T Consensus 385 ~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~ 462 (888)
T KOG0306|consen 385 SILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISL 462 (888)
T ss_pred ceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeee
Confidence 77776677889999999999999999654 8899999999999999999999999999999999999999999999998
Q ss_pred cC--CEEEEEeCCCcEEEEEccC-----CeeeEEee-------cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc
Q 001039 1015 DR--DTVITGSDDWTARMWSISR-----GTCDAVLA-------CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGG 1080 (1179)
Q Consensus 1015 ~~--~~l~sgs~dg~I~iwd~~~-----~~~~~~~~-------~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~ 1080 (1179)
.+ ..+++||.|.+|++||..- |...+.+. .-...|.|+.+||||++|+++--|.+|+||-+++
T Consensus 463 ~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt--- 539 (888)
T KOG0306|consen 463 SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT--- 539 (888)
T ss_pred cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc---
Confidence 54 5899999999999999742 22212111 1356799999999999999999999999999999
Q ss_pred ceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCC
Q 001039 1081 IKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLER 1158 (1179)
Q Consensus 1081 ~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg 1158 (1179)
.+..-++-||.-+|.++ |||++++++||.|.+|++|-++ -| .|...+.+|...|.+|.|-|+.
T Consensus 540 lKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd---------FG------DCHKS~fAHdDSvm~V~F~P~~ 604 (888)
T KOG0306|consen 540 LKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD---------FG------DCHKSFFAHDDSVMSVQFLPKT 604 (888)
T ss_pred eeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc---------cc------hhhhhhhcccCceeEEEEcccc
Confidence 88888999999999887 8999999999999999999987 44 7888899999999999999999
Q ss_pred CEEEEEeCCCcEEEEECC
Q 001039 1159 KRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1159 ~~Lasgs~Dg~I~vWdv~ 1176 (1179)
..+.|||.||.|+-||-.
T Consensus 605 ~~FFt~gKD~kvKqWDg~ 622 (888)
T KOG0306|consen 605 HLFFTCGKDGKVKQWDGE 622 (888)
T ss_pred eeEEEecCcceEEeechh
Confidence 999999999999999854
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-32 Score=279.70 Aligned_cols=288 Identities=19% Similarity=0.340 Sum_probs=242.1
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCc---eeEEEeccccccEEE--EecCC
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGS---ELRATLKGHTRTVRA--INSDR 893 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~---~~~~~l~~h~~~v~~--~s~d~ 893 (1179)
...+++||++.|++++..+ .+.+.+++++.|.++.+|++..... ..++.+.||...|.. +++||
T Consensus 7 l~~tl~gh~d~Vt~la~~~-----------~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg 75 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKI-----------KNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG 75 (315)
T ss_pred eeeeecCCCceEEEEEeec-----------CCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC
Confidence 3458999999999999874 4578999999999999999864433 457889999999984 58999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccC-CCcEEEEE
Q 001039 894 GKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRC-SSAVLCME 971 (1179)
Q Consensus 894 ~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-~~~v~~l~ 971 (1179)
++.++++.|+++++||+.+|+..+.|.+|...|.+++++ ++..+++|+.|.+|++|++..+......... .+.|.|+.
T Consensus 76 ~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvr 155 (315)
T KOG0279|consen 76 NFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVR 155 (315)
T ss_pred ceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEE
Confidence 999999999999999999999999999999999999999 7889999999999999998755444333333 78999999
Q ss_pred EcCC--CCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEEeecCCc
Q 001039 972 YDDS--TGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLACHAG 1047 (1179)
Q Consensus 972 ~sp~--~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~ 1047 (1179)
|+|+ ..+|++++.|+++++||+++.+....+.+|.+.++.+++++ ...++|+.||.+.+||++.++.+..+. |..
T Consensus 156 fsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~ 234 (315)
T KOG0279|consen 156 FSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFD 234 (315)
T ss_pred EcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCC
Confidence 9997 78999999999999999999999999999999999999854 599999999999999999999988776 788
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEe-eccc-----CceE--EEEecCCCEEEEEECCCcEEEEeCC
Q 001039 1048 PVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKN-VTIH-----SSAI--LSINAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1048 ~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~-~~~h-----~~~i--~sis~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
.|.+++|+|+.-.|+.+. +..|+|||+.+......++. ..+. .... ++++.||..|.+|..|+.|++|.+.
T Consensus 235 ~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 235 IVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 999999999887777665 44599999998442222211 1111 1122 3347899999999999999999874
No 23
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-32 Score=276.66 Aligned_cols=292 Identities=21% Similarity=0.395 Sum_probs=242.2
Q ss_pred ceeEEEeccccccEEEE--ec-CCCEEEEEeCCCcEEEEECC-----CCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcC
Q 001039 873 SELRATLKGHTRTVRAI--NS-DRGKVVSGSDDQSVLVWDKQ-----TSQLLEELKGHDAQVSCVRML-SGERVLTASHD 943 (1179)
Q Consensus 873 ~~~~~~l~~h~~~v~~~--s~-d~~~l~sgs~dg~I~iwd~~-----t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~d 943 (1179)
..+..++++|++.|+++ .+ +.+.+++++.|.++.+|++. .|..++.++||...|..+..+ ++++.++++.|
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 44567899999999976 33 46789999999999999874 467889999999999999998 89999999999
Q ss_pred CeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC--CCCeEEEEEcCC----
Q 001039 944 GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH--TKWIRSIRMDRD---- 1017 (1179)
Q Consensus 944 g~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~--~~~I~sl~~~~~---- 1017 (1179)
+++++||+.+++..+.+.+|...|.++++++|.+.+++|+.|.+|.+||+... +..++..+ .++|.++.|+|+
T Consensus 85 ~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 85 GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 99999999999999999999999999999999999999999999999998754 44444333 789999999876
Q ss_pred EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEE--
Q 001039 1018 TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAIL-- 1095 (1179)
Q Consensus 1018 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~-- 1095 (1179)
++++++.|++|++||+++.+....+.+|.+.++.+++||||..+++|+.||.+.+||++.+ +.+..+ .|...|.
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~lysl-~a~~~v~sl 239 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KNLYSL-EAFDIVNSL 239 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---ceeEec-cCCCeEeeE
Confidence 8999999999999999999999999999999999999999999999999999999999984 444444 4666664
Q ss_pred EEecCCCEEEEEECCCcEEEEeCCCCCcCc-ccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001039 1096 SINAGDHWLGIGAADNSMSLFHRPQERLGG-FSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1174 (1179)
Q Consensus 1096 sis~dg~~lasgs~Dg~I~iwd~~~~~~~~-~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWd 1174 (1179)
+++|+.-+|+.+.. ..|+|||+.++.... +..++... ........-.+++||+||..|.+|-.|+.|++|.
T Consensus 240 ~fspnrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~-------s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 240 CFSPNRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGP-------SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EecCCceeEeeccC-CceEEEeccchhhhhhcccccccc-------ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 45788777777655 469999998654311 11111000 1122233457889999999999999999999999
Q ss_pred CCC
Q 001039 1175 ATI 1177 (1179)
Q Consensus 1175 v~t 1177 (1179)
+..
T Consensus 312 v~~ 314 (315)
T KOG0279|consen 312 VAK 314 (315)
T ss_pred eec
Confidence 864
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.6e-32 Score=273.53 Aligned_cols=272 Identities=16% Similarity=0.307 Sum_probs=237.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCe--EEEEeccCCCcEEEE
Q 001039 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDT--CVATVGRCSSAVLCM 970 (1179)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~~~~v~~l 970 (1179)
.-.|+++|.|.+|++|...+|.+.++++..++.|+.+...+++..+++.....|++||++++. ++.++.+|...|+++
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 357899999999999999999999999988999999999965554445556789999999875 588999999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC--EEEEEeCCCcEEEEEccCCeeeEEee-cCCc
Q 001039 971 EYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLA-CHAG 1047 (1179)
Q Consensus 971 ~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~ 1047 (1179)
.|..+|+++++|+.||+++|||++...+.+.+ .+..+|+++..+++ .|++|..+|.|++||+....+...+. ....
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 99999999999999999999999996666655 56699999999876 89999999999999999887766654 3456
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEEcCCCC---cceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCC
Q 001039 1048 PVQCVEYSSSDRGIITGSSDGLLRFWENDDAG---GIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQER 1122 (1179)
Q Consensus 1048 ~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~---~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~ 1122 (1179)
.|.++...|||.+++.+...|..++|++-+.. ....+..++.|...++.. |||+++||++|.|.+++||+.++-
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~- 247 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF- 247 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-
Confidence 89999999999999999999999999987643 456667788899888664 999999999999999999998732
Q ss_pred cCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 001039 1123 LGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATINI 1179 (1179)
Q Consensus 1123 ~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg~ 1179 (1179)
++.-..+.+|...+++.+||.||.+|+||+.|+++++|++.+|+
T Consensus 248 -------------~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 248 -------------FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred -------------eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 14556678999999999999999999999999999999999875
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.8e-32 Score=293.63 Aligned_cols=324 Identities=19% Similarity=0.379 Sum_probs=277.3
Q ss_pred eEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCce------eEEEe--ccc----cccEE
Q 001039 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSE------LRATL--KGH----TRTVR 887 (1179)
Q Consensus 820 ~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~------~~~~l--~~h----~~~v~ 887 (1179)
.+.+. |+.+|.+.+|+| -....+++|+.|-+.++|++...... +.+.+ .++ ...|+
T Consensus 172 ~kvl~-~~~~V~~~~WnP-----------~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT 239 (524)
T KOG0273|consen 172 AKVLR-HESEVFICAWNP-----------LRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVT 239 (524)
T ss_pred eeecc-CCCceEEEecCc-----------hhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcc
Confidence 34444 999999999985 34458999999999999998631111 11111 111 23455
Q ss_pred E--EecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCC
Q 001039 888 A--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCS 964 (1179)
Q Consensus 888 ~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~ 964 (1179)
+ ++.+|..|++|+.||.+++|+.. |..+.++..|.++|.++.|+ .|++|++++.||++.+||..+|+..+.+.-|.
T Consensus 240 ~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s 318 (524)
T KOG0273|consen 240 SLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHS 318 (524)
T ss_pred eEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeecc
Confidence 5 56779999999999999999954 78889999999999999999 89999999999999999999999999998888
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEc--CCEEEEEeCCCcEEEEEccCCeeeEEe
Q 001039 965 SAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVL 1042 (1179)
Q Consensus 965 ~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~ 1042 (1179)
.+-..+.|-.+. .+++.+.||.|+++.+....++.++.+|.+.|.++.|+ +.+|++++.|++++||+.....+...+
T Consensus 319 ~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l 397 (524)
T KOG0273|consen 319 APALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDL 397 (524)
T ss_pred CCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhh
Confidence 887778886554 48888999999999999999999999999999999998 559999999999999999999999999
Q ss_pred ecCCcCEEEEEEecCC---------CEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCC
Q 001039 1043 ACHAGPVQCVEYSSSD---------RGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADN 1111 (1179)
Q Consensus 1043 ~~h~~~V~~l~~spdg---------~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg 1111 (1179)
.+|...|..+.|+|+| ..+++++.|++|++||+.. ..++..+..|+.+|+++ +|+|+++|+|+.||
T Consensus 398 ~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~---gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg 474 (524)
T KOG0273|consen 398 QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES---GVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDG 474 (524)
T ss_pred hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC---CceeEeeccCCCceEEEEecCCCcEEEecCCCC
Confidence 9999999999999965 4689999999999999998 68888999999999887 78999999999999
Q ss_pred cEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1112 SMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1112 ~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
.|.+|+++.. ++++...+ .+.|..++|+.+|..|..+-.||.+++-|+.
T Consensus 475 ~V~iws~~~~---------------~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 475 CVHIWSTKTG---------------KLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eeEeccccch---------------heeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999844 44444443 3459999999999999999999999998874
No 26
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.9e-33 Score=292.80 Aligned_cols=309 Identities=22% Similarity=0.420 Sum_probs=275.5
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcE
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQV 926 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V 926 (1179)
..+.-++.|.-.+..+.-+.-.+...+.+.+.+|...|+.+ +|+-..+++++.|++|++||..+|++.+.++||.+.+
T Consensus 74 ~~~~el~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv 153 (406)
T KOG0295|consen 74 ETGDELIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSV 153 (406)
T ss_pred ccccccccCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccce
Confidence 34455566655555554433233455667788999999864 8898999999999999999999999999999999999
Q ss_pred EEEEEe-CCCEEEEEEcCCeEEEEeCCC-CeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec
Q 001039 927 SCVRML-SGERVLTASHDGTVKMWDVRT-DTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG 1004 (1179)
Q Consensus 927 ~~l~~s-~~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~ 1004 (1179)
..++|+ .|.++++++.|-.+++||..+ .++++.+.+|...|.++.|-|.|.++++++.|.+|+.|++.+|.++.++.+
T Consensus 154 ~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~ 233 (406)
T KOG0295|consen 154 FDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPG 233 (406)
T ss_pred eEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccC
Confidence 999999 689999999999999999987 567888889999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEc--CCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecC---------------CCEEEEEeCC
Q 001039 1005 HTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSS---------------DRGIITGSSD 1067 (1179)
Q Consensus 1005 ~~~~I~sl~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd---------------g~~l~sgs~D 1067 (1179)
|..+|..+..+ +.++++++.|.++++|-+.++++...+..|..+|.+++|-|. ++++.+++.|
T Consensus 234 h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD 313 (406)
T KOG0295|consen 234 HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD 313 (406)
T ss_pred chHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence 99999999984 558999999999999999999999999999999999999772 3689999999
Q ss_pred CcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCC
Q 001039 1068 GLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKT 1145 (1179)
Q Consensus 1068 g~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h 1145 (1179)
++|++||+.+ ..|+.++.+|..+|..+ +|.|++|+++.+|+++++||+++. ++...+..|
T Consensus 314 ktIk~wdv~t---g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~---------------~cmk~~~ah 375 (406)
T KOG0295|consen 314 KTIKIWDVST---GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL---------------QCMKTLEAH 375 (406)
T ss_pred ceEEEEeccC---CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc---------------eeeeccCCC
Confidence 9999999999 68999999999999655 789999999999999999999844 778888899
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001039 1146 VAVVRCIASDLERKRICSGGRNGLLRLWEA 1175 (1179)
Q Consensus 1146 ~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv 1175 (1179)
..-|++++|+.+..+++||+-|.++++|.-
T Consensus 376 ~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 376 EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999999974
No 27
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.2e-32 Score=269.95 Aligned_cols=282 Identities=21% Similarity=0.351 Sum_probs=248.4
Q ss_pred CceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCEEEEEe
Q 001039 781 SSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGS 858 (1179)
Q Consensus 781 ~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs 858 (1179)
-+|++++.| ||+|.+.+|. +.+++....+.|+.+... ||++.||+|+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~-------------------C~rTiqh~dsqVNrLeiT------------pdk~~LAaa~ 59 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGI-------------------CSRTIQHPDSQVNRLEIT------------PDKKDLAAAG 59 (311)
T ss_pred eEEEeccCcceeeeeehhcCe-------------------EEEEEecCccceeeEEEc------------CCcchhhhcc
Confidence 478999999 9999999998 999999999999999997 8999999998
Q ss_pred CCCcEEEEcCCCCCceeEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCC
Q 001039 859 TDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGE 935 (1179)
Q Consensus 859 ~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~ 935 (1179)
. -.||+||++......+.++.+|+..|+++ ..+|+++++|++||+++|||++...+.+.++ |..+|+++..+ +..
T Consensus 60 ~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQt 137 (311)
T KOG0315|consen 60 N-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQT 137 (311)
T ss_pred C-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcc
Confidence 5 57999999977777899999999999864 7899999999999999999999976666665 67999999999 566
Q ss_pred EEEEEEcCCeEEEEeCCCCeEEEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------ceeEEeecCCCC
Q 001039 936 RVLTASHDGTVKMWDVRTDTCVATV-GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG------RQMHKFLGHTKW 1008 (1179)
Q Consensus 936 ~l~sgs~dg~I~iwd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~------~~~~~~~~~~~~ 1008 (1179)
.|++|..+|.|++||+.+..+...+ ......|.++...|||..++++...|..++|++-+. +++.+++.|.+.
T Consensus 138 eLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~ 217 (311)
T KOG0315|consen 138 ELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH 217 (311)
T ss_pred eEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce
Confidence 7999999999999999998776665 345678999999999999999999999999998764 456778899999
Q ss_pred eEEEEEcCC--EEEEEeCCCcEEEEEccCC-eeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEE
Q 001039 1009 IRSIRMDRD--TVITGSDDWTARMWSISRG-TCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVK 1085 (1179)
Q Consensus 1009 I~sl~~~~~--~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~ 1085 (1179)
+..+.++|+ +|++++.|.+++||+.++. +....+.+|..+++.++||.||.||++|+.|+.+++||+.. .+.+.
T Consensus 218 il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~---~k~v~ 294 (311)
T KOG0315|consen 218 ILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSA---GKEVR 294 (311)
T ss_pred EEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccccc---Cceee
Confidence 999888665 9999999999999999887 66677889999999999999999999999999999999998 46667
Q ss_pred eecccCceEEEEe
Q 001039 1086 NVTIHSSAILSIN 1098 (1179)
Q Consensus 1086 ~~~~h~~~i~sis 1098 (1179)
...+|.....++.
T Consensus 295 qy~gh~K~~vc~~ 307 (311)
T KOG0315|consen 295 QYQGHHKAAVCVA 307 (311)
T ss_pred ecCCcccccEEEE
Confidence 7778877665553
No 28
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.5e-31 Score=282.05 Aligned_cols=327 Identities=18% Similarity=0.256 Sum_probs=283.9
Q ss_pred ccceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCC
Q 001039 817 QSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRG 894 (1179)
Q Consensus 817 ~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~ 894 (1179)
...+..+..|++.|.+++.+ |+.++++||+.|..-.+|+.. +++....+.+|...|++ |+.+|.
T Consensus 54 DdS~~tF~~H~~svFavsl~------------P~~~l~aTGGgDD~AflW~~~--~ge~~~eltgHKDSVt~~~Fshdgt 119 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLH------------PNNNLVATGGGDDLAFLWDIS--TGEFAGELTGHKDSVTCCSFSHDGT 119 (399)
T ss_pred ccceeehhhcCCceEEEEeC------------CCCceEEecCCCceEEEEEcc--CCcceeEecCCCCceEEEEEccCce
Confidence 34678999999999999998 889999999999999999976 45577889999999996 589999
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeC-CCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEc
Q 001039 895 KVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS-GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYD 973 (1179)
Q Consensus 895 ~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s 973 (1179)
+||+|+.+|.|+||+..++.....+...-+.+.-+.|++ +..+++|+.||.+.+|.+.++...+.+.+|..++++-.|.
T Consensus 120 lLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~ 199 (399)
T KOG0296|consen 120 LLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFI 199 (399)
T ss_pred EEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccccc
Confidence 999999999999999999999998887777888899994 7789999999999999999988889999999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEeecCC-CCeEEEEE--cCCEEEEEeCCCcEEEEEccCCeeeEEee-------
Q 001039 974 DSTGILAAGGRDAVANIWDIRAGRQMHKFLGHT-KWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLA------- 1043 (1179)
Q Consensus 974 p~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~-~~I~sl~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~------- 1043 (1179)
|+|+.++++..||+|++||..++.++.++.+.. ....++.+ .+..++.|+.++.+++-+..+|+.+....
T Consensus 200 pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~ 279 (399)
T KOG0296|consen 200 PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELK 279 (399)
T ss_pred CCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcccc
Confidence 999999999999999999999999998886433 23445555 56789999999999999988888777665
Q ss_pred -cCCcCEEEE---EEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCC-CEEEEEECCCcEEEEeC
Q 001039 1044 -CHAGPVQCV---EYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGD-HWLGIGAADNSMSLFHR 1118 (1179)
Q Consensus 1044 -~h~~~V~~l---~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg-~~lasgs~Dg~I~iwd~ 1118 (1179)
.+...+.++ .++..-.+.|+|+-||+|.|||+.. ..++..-.|...|+.+-+.+ .+|++++.||.|+.||.
T Consensus 280 ~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~----~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDa 355 (399)
T KOG0296|consen 280 PSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA----STLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDA 355 (399)
T ss_pred ccchhhhhhhhhcccccccchhhcccccceEEEEeccc----chhheeccCCCceEEEEEcCcchheeeccCceEEeeec
Confidence 344444444 4555667789999999999999988 44555557888898886655 89999999999999999
Q ss_pred CCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1119 PQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1119 ~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
. +| ++..+..+|...|.+++.+|++++++|+|.|++.+|+++.
T Consensus 356 R---------tG------~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 356 R---------TG------QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred c---------cc------ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 8 45 7888999999999999999999999999999999999975
No 29
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-32 Score=290.45 Aligned_cols=283 Identities=23% Similarity=0.461 Sum_probs=263.5
Q ss_pred CcccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecc
Q 001039 761 PAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTK 838 (1179)
Q Consensus 761 ~~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~ 838 (1179)
...+.||..++..+-|.|+-..+++++.| |++||..+++ ..+.++||++.|..|+|+
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~-------------------~e~~LrGHt~sv~di~~~-- 159 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGE-------------------LERSLRGHTDSVFDISFD-- 159 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchh-------------------hhhhhhccccceeEEEEe--
Confidence 34467899999999999999999999988 9999999998 778899999999999998
Q ss_pred cceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeEE
Q 001039 839 REVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLL 916 (1179)
Q Consensus 839 ~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~ 916 (1179)
..|+++|+++.|-.+++||.+ ....+++.+.+|...|.++ -|.|.++++++.|.+|+.|++.+|-++
T Consensus 160 ----------a~Gk~l~tcSsDl~~~LWd~~-~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv 228 (406)
T KOG0295|consen 160 ----------ASGKYLATCSSDLSAKLWDFD-TFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCV 228 (406)
T ss_pred ----------cCccEEEecCCccchhheeHH-HHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeE
Confidence 789999999999999999976 2356678888999988864 689999999999999999999999999
Q ss_pred EEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCC---------------CCEEE
Q 001039 917 EELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS---------------TGILA 980 (1179)
Q Consensus 917 ~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~---------------~~~l~ 980 (1179)
.++.+|...|..++.+ ||..+++++.|.++++|-+.++++...+..|.-+|.|++|-|. +.++.
T Consensus 229 ~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~ 308 (406)
T KOG0295|consen 229 KTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLG 308 (406)
T ss_pred EeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEE
Confidence 9999999999999999 8999999999999999999999999999999999999999652 25899
Q ss_pred EEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEc--CCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCC
Q 001039 981 AGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSD 1058 (1179)
Q Consensus 981 sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg 1058 (1179)
+++.|++|++||+.++.++.++.+|.++|..++++ |.+|+++.+|+++++||++++++.+++..|..-++++.|+.+.
T Consensus 309 s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~ 388 (406)
T KOG0295|consen 309 SGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTA 388 (406)
T ss_pred eecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCC
Confidence 99999999999999999999999999999999997 6799999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEEc
Q 001039 1059 RGIITGSSDGLLRFWEN 1075 (1179)
Q Consensus 1059 ~~l~sgs~Dg~I~iwd~ 1075 (1179)
.++++|+-|.++++|..
T Consensus 389 p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 389 PYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceEEeccccceeeeeec
Confidence 99999999999999964
No 30
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.9e-31 Score=281.14 Aligned_cols=324 Identities=17% Similarity=0.276 Sum_probs=280.2
Q ss_pred CCCCcccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEe
Q 001039 758 DQQPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHC 835 (1179)
Q Consensus 758 ~~~~~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~ 835 (1179)
+.......+|..++.+++.+|+.+++|||+.| -.+|+..++. ....+.||+..|+++.|
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-------------------~~~eltgHKDSVt~~~F 114 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-------------------FAGELTGHKDSVTCCSF 114 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-------------------ceeEecCCCCceEEEEE
Confidence 34455678999999999999999999999998 8999999988 57789999999999999
Q ss_pred ecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE--EEecCCCEEEEEeCCCcEEEEECCCC
Q 001039 836 VTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTS 913 (1179)
Q Consensus 836 s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~l~sgs~dg~I~iwd~~t~ 913 (1179)
+ .||.+||||+.+|.|+||+.+ ++.....+......+. +++|.+..|++|+.||.+.+|.+.++
T Consensus 115 s------------hdgtlLATGdmsG~v~v~~~s--tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~ 180 (399)
T KOG0296|consen 115 S------------HDGTLLATGDMSGKVLVFKVS--TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ 180 (399)
T ss_pred c------------cCceEEEecCCCccEEEEEcc--cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc
Confidence 8 899999999999999999987 3333344432222232 67999999999999999999999998
Q ss_pred eEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccC-CCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 001039 914 QLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRC-SSAVLCMEYDDSTGILAAGGRDAVANIW 991 (1179)
Q Consensus 914 ~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~sgs~dg~I~iw 991 (1179)
...+.+.||..++++=.|. +|++++++..||+|++||..+++++..+... .....++.++..+..++.|+.++.+++.
T Consensus 181 ~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~ 260 (399)
T KOG0296|consen 181 ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGV 260 (399)
T ss_pred ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEE
Confidence 8889999999999999998 7999999999999999999999999888643 4567889999999999999999999999
Q ss_pred eCCCCceeEEee--------cCCCCeEEEEE---cCC--EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCC
Q 001039 992 DIRAGRQMHKFL--------GHTKWIRSIRM---DRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSD 1058 (1179)
Q Consensus 992 D~~~~~~~~~~~--------~~~~~I~sl~~---~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg 1058 (1179)
+..+|+.+.... .+...+.++.+ +.. +.++|+-||+|.|||+...+...... |...|+.+.|.+ .
T Consensus 261 ~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t 338 (399)
T KOG0296|consen 261 NNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-T 338 (399)
T ss_pred ccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-c
Confidence 999999887766 33444444444 333 78999999999999999887776666 888999999998 7
Q ss_pred CEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCC
Q 001039 1059 RGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1059 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
.+|++++.+|.|+.||.++ .++.....+|...|+++ +|++++++++|.|++.+||+.+
T Consensus 339 ~~l~t~c~~g~v~~wDaRt---G~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 339 DYLLTACANGKVRQWDART---GQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred chheeeccCceEEeeeccc---cceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 8999999999999999999 67888899999999877 7999999999999999999875
No 31
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.1e-33 Score=294.32 Aligned_cols=275 Identities=25% Similarity=0.478 Sum_probs=250.1
Q ss_pred ccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcE
Q 001039 826 HAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSV 905 (1179)
Q Consensus 826 H~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I 905 (1179)
....|+|+.+ |...+++|..|++|+|||.+ ...+...+.||++.|.|+..+.+.+++|+.|.+|
T Consensus 196 ~skgVYClQY--------------DD~kiVSGlrDnTikiWD~n--~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTv 259 (499)
T KOG0281|consen 196 NSKGVYCLQY--------------DDEKIVSGLRDNTIKIWDKN--SLECLKILTGHTGSVLCLQYDERVIVSGSSDSTV 259 (499)
T ss_pred cCCceEEEEe--------------cchhhhcccccCceEEeccc--cHHHHHhhhcCCCcEEeeeccceEEEecCCCceE
Confidence 4567999997 57789999999999999954 6778889999999999999999999999999999
Q ss_pred EEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCe---EEEEeccCCCcEEEEEEcCCCCEEEEE
Q 001039 906 LVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDT---CVATVGRCSSAVLCMEYDDSTGILAAG 982 (1179)
Q Consensus 906 ~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~---~~~~~~~~~~~v~~l~~sp~~~~l~sg 982 (1179)
++||+++|+++.++-+|...|..+.|++ +++++++.|.++.+||+.... +.+.+.+|...|..+.|+ .++++++
T Consensus 260 rvWDv~tge~l~tlihHceaVLhlrf~n-g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsA 336 (499)
T KOG0281|consen 260 RVWDVNTGEPLNTLIHHCEAVLHLRFSN-GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSA 336 (499)
T ss_pred EEEeccCCchhhHHhhhcceeEEEEEeC-CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEe
Confidence 9999999999999999999999999985 589999999999999998754 234567899999999986 4599999
Q ss_pred eCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEE
Q 001039 983 GRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGII 1062 (1179)
Q Consensus 983 s~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 1062 (1179)
+.|.+|++|++.+++.++++.+|...|.|+.+.+.++++|+.|.+|++||+..|.++..+.+|+.-|.++.|. .+.++
T Consensus 337 SgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIV 414 (499)
T KOG0281|consen 337 SGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIV 414 (499)
T ss_pred cCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 78899
Q ss_pred EEeCCCcEEEEEcCCCCcc------eEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCCCC
Q 001039 1063 TGSSDGLLRFWENDDAGGI------KCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQE 1121 (1179)
Q Consensus 1063 sgs~Dg~I~iwd~~~~~~~------~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~ 1121 (1179)
+|+.||+|++||+..+... -|+..+..|++.|..+..|...+++++.|.+|-|||..+.
T Consensus 415 SGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 415 SGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred eccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCC
Confidence 9999999999999875422 2666777899999999999999999999999999998744
No 32
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.9e-31 Score=298.59 Aligned_cols=362 Identities=17% Similarity=0.313 Sum_probs=295.4
Q ss_pred cccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccce
Q 001039 764 ASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREV 841 (1179)
Q Consensus 764 ~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~ 841 (1179)
..+....++++.=+||.-.+|.|-.| |++|+..++. ..-++.||+.+|+++.|.
T Consensus 61 ~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~-------------------~~~tfngHK~AVt~l~fd----- 116 (888)
T KOG0306|consen 61 LLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEE-------------------ILITFNGHKAAVTTLKFD----- 116 (888)
T ss_pred hhcccceEEEeeccCCcceEEEEecCceEEeeccCCCc-------------------eeeeecccccceEEEEEc-----
Confidence 33433466666777899899999999 9999998775 567899999999999997
Q ss_pred eccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 001039 842 WDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEEL 919 (1179)
Q Consensus 842 ~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~ 919 (1179)
..|..|+|||.|+.|.+||+- +..-...+.||...|+. |..+.+.+++.+.|+.|++||+.+..+..+.
T Consensus 117 -------~~G~rlaSGskDt~IIvwDlV--~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Th 187 (888)
T KOG0306|consen 117 -------KIGTRLASGSKDTDIIVWDLV--GEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETH 187 (888)
T ss_pred -------ccCceEeecCCCccEEEEEec--cceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEE
Confidence 899999999999999999976 55666889999999995 3556789999999999999999999999999
Q ss_pred ecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCC------------------------CeEE------------------
Q 001039 920 KGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRT------------------------DTCV------------------ 957 (1179)
Q Consensus 920 ~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~------------------------~~~~------------------ 957 (1179)
-.|.+.++.+++.+ +.+++++.|+.+++|++.. ++.+
T Consensus 188 vd~r~Eiw~l~~~~-~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~ 266 (888)
T KOG0306|consen 188 VDHRGEIWALVLDE-KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADK 266 (888)
T ss_pred ecccceEEEEEEec-ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchh
Confidence 99999999999987 7899999999999998710 0000
Q ss_pred --------------------------------------------------------------------------------
Q 001039 958 -------------------------------------------------------------------------------- 957 (1179)
Q Consensus 958 -------------------------------------------------------------------------------- 957 (1179)
T Consensus 267 ~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv 346 (888)
T KOG0306|consen 267 VIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTV 346 (888)
T ss_pred hhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCce
Confidence
Q ss_pred --------------------EEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE--c
Q 001039 958 --------------------ATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--D 1015 (1179)
Q Consensus 958 --------------------~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~--~ 1015 (1179)
..+.+|...|.+++++.+...+++|+ .+.+++|+..+.++++++... .+.+..| .
T Consensus 347 ~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpg 423 (888)
T KOG0306|consen 347 EWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPG 423 (888)
T ss_pred EEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCC
Confidence 00123444566777777776666654 578999999999999998654 5666666 4
Q ss_pred CCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCC-----CcceEE-----E
Q 001039 1016 RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDA-----GGIKCV-----K 1085 (1179)
Q Consensus 1016 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~-----~~~~~~-----~ 1085 (1179)
+.++++|...|.+.+||+.+...+.+..+|++.|++++.+||++.+++||.|.+|++||..-. .+.+.+ +
T Consensus 424 d~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~r 503 (888)
T KOG0306|consen 424 DRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTR 503 (888)
T ss_pred CceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccce
Confidence 459999999999999999999999999999999999999999999999999999999997531 111111 1
Q ss_pred eecccCceEEE--EecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEE
Q 001039 1086 NVTIHSSAILS--INAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICS 1163 (1179)
Q Consensus 1086 ~~~~h~~~i~s--is~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Las 1163 (1179)
++ .-...|.+ +||||++||++--|++++||-+.+- +..-.+-||.-+|.|+..|||++.++|
T Consensus 504 tL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl---------------KFflsLYGHkLPV~smDIS~DSklivT 567 (888)
T KOG0306|consen 504 TL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL---------------KFFLSLYGHKLPVLSMDISPDSKLIVT 567 (888)
T ss_pred EE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecce---------------eeeeeecccccceeEEeccCCcCeEEe
Confidence 11 11233444 4899999999999999999998743 667778899999999999999999999
Q ss_pred EeCCCcEEEEECCCC
Q 001039 1164 GGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1164 gs~Dg~I~vWdv~tg 1178 (1179)
||.|.+|++|-++=|
T Consensus 568 gSADKnVKiWGLdFG 582 (888)
T KOG0306|consen 568 GSADKNVKIWGLDFG 582 (888)
T ss_pred ccCCCceEEeccccc
Confidence 999999999987643
No 33
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.5e-32 Score=282.70 Aligned_cols=291 Identities=24% Similarity=0.414 Sum_probs=257.5
Q ss_pred ceeEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeC-CCEEEEEEcCCeEEEE
Q 001039 873 SELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS-GERVLTASHDGTVKMW 949 (1179)
Q Consensus 873 ~~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~-~~~l~sgs~dg~I~iw 949 (1179)
.++...+++|.+.|.|+ .|.+.++++|+.|++++|||+.+|+...++.||...|..+++++ ..++++++.|+.|+.|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 45667899999999976 68899999999999999999999999999999999999999994 6789999999999999
Q ss_pred eCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEc--CCEEEEEeCCCc
Q 001039 950 DVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWT 1027 (1179)
Q Consensus 950 d~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~--~~~l~sgs~dg~ 1027 (1179)
|++..+.++.+.+|-+.|.|++.+|.-..|++|+.|.++++||+++...+..+.||...|.++.+. ...+++|+.|++
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t 300 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST 300 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence 999999999999999999999999999999999999999999999999999999999999999996 348999999999
Q ss_pred EEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEe-cCCCEEEE
Q 001039 1028 ARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSIN-AGDHWLGI 1106 (1179)
Q Consensus 1028 I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis-~dg~~las 1106 (1179)
|++||++.|+...++..|...|.+++.+|....+|+++.|. |+-|++.. ...+..+.+|+..+.+++ .++.++++
T Consensus 301 vrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~---g~f~~nlsgh~~iintl~~nsD~v~~~ 376 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPE---GEFLQNLSGHNAIINTLSVNSDGVLVS 376 (460)
T ss_pred EEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCc---cchhhccccccceeeeeeeccCceEEE
Confidence 99999999999999999999999999999999999998886 99999988 456666889999998885 45678899
Q ss_pred EECCCcEEEEeCCCCCcCcccCCCCccccceeeeec--CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1107 GAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTP--QKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1107 gs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~--~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
|+++|.+..||..++ ......+....+ ......|.+.+|...|..|+||..|.+|++|.-+
T Consensus 377 G~dng~~~fwdwksg---------~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 377 GGDNGSIMFWDWKSG---------HNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred cCCceEEEEEecCcC---------cccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 999999999999843 211111111111 1234579999999999999999999999999754
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2e-33 Score=292.23 Aligned_cols=281 Identities=23% Similarity=0.430 Sum_probs=251.6
Q ss_pred ccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEec
Q 001039 882 HTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVG 961 (1179)
Q Consensus 882 h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 961 (1179)
....|.|+-.|...+++|..|++|+|||..+-.+...+.||++.|.|+.|.+ ..+++|+.|.+|++||+++|+++.++-
T Consensus 196 ~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~-rviisGSSDsTvrvWDv~tge~l~tli 274 (499)
T KOG0281|consen 196 NSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE-RVIVSGSSDSTVRVWDVNTGEPLNTLI 274 (499)
T ss_pred cCCceEEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc-eEEEecCCCceEEEEeccCCchhhHHh
Confidence 4567889999999999999999999999999999999999999999999864 489999999999999999999999999
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCee
Q 001039 962 RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ---MHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTC 1038 (1179)
Q Consensus 962 ~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~---~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~ 1038 (1179)
+|...|..+.|+ +.++++++.|.++.+||+..... .+.+.||...|+.+.|+.+++++++.|.+|++|++.+++.
T Consensus 275 hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~ef 352 (499)
T KOG0281|consen 275 HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEF 352 (499)
T ss_pred hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceee
Confidence 999999999997 45799999999999999987643 3557899999999999999999999999999999999999
Q ss_pred eEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeC
Q 001039 1039 DAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHR 1118 (1179)
Q Consensus 1039 ~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~ 1118 (1179)
+.++.+|...|-|+.+. |+++++|++|.+|++||+.. ..++..+.||..-|.++..|.+.+++|+.||+|+|||+
T Consensus 353 vRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~---G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl 427 (499)
T KOG0281|consen 353 VRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC---GACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 427 (499)
T ss_pred ehhhhcccccceehhcc--CeEEEecCCCceEEEEeccc---cHHHHHHhchHHhhhheeecCceeeeccccceEEEEec
Confidence 99999999999999885 89999999999999999999 67888889999999999999999999999999999999
Q ss_pred CCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1119 PQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1119 ~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
....- ......--|+.+...|++.|..+.| |...|++++.|.+|-|||+..|
T Consensus 428 ~aald------pra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 428 QAALD------PRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred ccccC------CcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence 74321 1111122467778899999999999 5678999999999999999765
No 35
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.9e-31 Score=296.78 Aligned_cols=402 Identities=15% Similarity=0.200 Sum_probs=297.5
Q ss_pred cccccccCcccc-cCCCCCCCCCCCCCCcccccCCcceEEEEEccCCCceeeccCc----eEeeeCCCCCCCCCCCCCCC
Q 001039 735 SIKGQSSLSNGM-PSPLSKDATNDDQQPAEASGIGRSWVQSMFSREASSRSHSFSR----VRKWTSDAANENGTPRKQDS 809 (1179)
Q Consensus 735 ~~~~~~~~~~~~-fSP~g~~~~~~~~~~~~~~gh~~~i~~~~fSpdg~~las~~~d----I~vWd~~~~~~~~~~~~~~~ 809 (1179)
+..+++.|++.| |.|+.. .|......|...+++++||++|+|+|+|-.. ++||++....
T Consensus 50 gl~aYpAGCvVVlfn~~~~------tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~---------- 113 (1080)
T KOG1408|consen 50 GLCAYPAGCVVVLFNVDSC------TQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHG---------- 113 (1080)
T ss_pred cceeeccCcEEEEEccccc------chhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeecccc----------
Confidence 556788888866 877743 3666677778899999999999999999643 9999998655
Q ss_pred CCCCcccccceEEEecccCceEEEEeecccce-------------------------------eccccccCCCCEEEEEe
Q 001039 810 TAGGKKIQSNIRIIRGHAGAITALHCVTKREV-------------------------------WDLVGDREDAGFFISGS 858 (1179)
Q Consensus 810 ~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~-------------------------------~~~~~~s~d~~~Lasgs 858 (1179)
.+..+..|+-.|+|++|+|..+- ..+++|+.||.|++|.+
T Consensus 114 ---------vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~g 184 (1080)
T KOG1408|consen 114 ---------VVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSG 184 (1080)
T ss_pred ---------chhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccccccceeEEEEEEccCCceeeeee
Confidence 56678889999999999876422 23578889999999988
Q ss_pred CCCcEEEEcCCCCCc-----------------------------------eeEEEecccc-----------------ccE
Q 001039 859 TDCLVKIWDPSLRGS-----------------------------------ELRATLKGHT-----------------RTV 886 (1179)
Q Consensus 859 ~Dg~I~lWd~~~~~~-----------------------------------~~~~~l~~h~-----------------~~v 886 (1179)
+..|++|.++.... ....+-+||- ...
T Consensus 185 -nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnA 263 (1080)
T KOG1408|consen 185 -NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNA 263 (1080)
T ss_pred -eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhcccc
Confidence 57899998652210 0000111110 011
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCC-----------------------------------------------------
Q 001039 887 RAINSDRGKVVSGSDDQSVLVWDKQTS----------------------------------------------------- 913 (1179)
Q Consensus 887 ~~~s~d~~~l~sgs~dg~I~iwd~~t~----------------------------------------------------- 913 (1179)
.|++-..+++++|+.+|.|++++..+-
T Consensus 264 nCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVY 343 (1080)
T KOG1408|consen 264 NCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVY 343 (1080)
T ss_pred ceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEE
Confidence 234445666777777777777654321
Q ss_pred -------------eEE---EEeecCCCcEEEEEEe------------CCCEEEEEEcCCeEEEEeCCCCeEEEEe-----
Q 001039 914 -------------QLL---EELKGHDAQVSCVRML------------SGERVLTASHDGTVKMWDVRTDTCVATV----- 960 (1179)
Q Consensus 914 -------------~~~---~~~~~h~~~V~~l~~s------------~~~~l~sgs~dg~I~iwd~~~~~~~~~~----- 960 (1179)
+.+ ..+-.|...||.+.-. +...+++++.|++|++||+..+..-..+
T Consensus 344 ndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNil 423 (1080)
T KOG1408|consen 344 NDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNIL 423 (1080)
T ss_pred cCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccc
Confidence 110 1112355555555432 2345899999999999998753110000
Q ss_pred --------------------------------ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCC
Q 001039 961 --------------------------------GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKW 1008 (1179)
Q Consensus 961 --------------------------------~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~ 1008 (1179)
-+....+.+++.+|+|++||+|..-|++++||+...+.+..+..|...
T Consensus 424 s~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesE 503 (1080)
T KOG1408|consen 424 SANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESE 503 (1080)
T ss_pred hhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccce
Confidence 012336899999999999999999999999999999988899999999
Q ss_pred eEEEEEcC-----CEEEEEeCCCcEEEEEccCC-eeeEEeecCCc-----------------------------------
Q 001039 1009 IRSIRMDR-----DTVITGSDDWTARMWSISRG-TCDAVLACHAG----------------------------------- 1047 (1179)
Q Consensus 1009 I~sl~~~~-----~~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~----------------------------------- 1047 (1179)
|.|+.++. .+|++++.|.-|.+||+... ..+.++.+|..
T Consensus 504 ilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~ 583 (1080)
T KOG1408|consen 504 ILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS 583 (1080)
T ss_pred eEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccC
Confidence 99999953 38999999999999997542 22223333333
Q ss_pred --------------CEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCC
Q 001039 1048 --------------PVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADN 1111 (1179)
Q Consensus 1048 --------------~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg 1111 (1179)
.++.++..|+.+++++++.|..|+|||+.++++.+.++.-.+|.+....+ .|.|.|+|+.+.|.
T Consensus 584 g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdk 663 (1080)
T KOG1408|consen 584 GRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDK 663 (1080)
T ss_pred ceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCC
Confidence 35666777777889999999999999999977666666666776666555 79999999999999
Q ss_pred cEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001039 1112 SMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1112 ~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
++.++|.. +| ++..+..||...|+.+.|++|.+.|++.+.||.|.||.+..
T Consensus 664 tl~~~Df~---------sg------EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 664 TLCFVDFV---------SG------ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ceEEEEec---------cc------hhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 99999998 44 78888899999999999999999999999999999999853
No 36
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.1e-31 Score=309.18 Aligned_cols=255 Identities=25% Similarity=0.422 Sum_probs=223.4
Q ss_pred CcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCC------CCCC------CCCCCCcccccceEEEecccCceEEE
Q 001039 768 GRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGT------PRKQ------DSTAGGKKIQSNIRIIRGHAGAITAL 833 (1179)
Q Consensus 768 ~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~------~~~~------~~~~~~~~~~~~~~~l~gH~~~V~~v 833 (1179)
+..+.|+.||+|++.+|.|..| |++|.+........ ...+ .............+++.||+++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 4678889999999999999999 99999985321000 0000 00111122234567799999999999
Q ss_pred EeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECC
Q 001039 834 HCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQ 911 (1179)
Q Consensus 834 ~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~ 911 (1179)
.|+ |+.++|+++|.|++||+|.+. +......++||..+|+. |+|.|-++|||+.|++.++|..+
T Consensus 458 sFs------------Pd~rfLlScSED~svRLWsl~--t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d 523 (707)
T KOG0263|consen 458 SFS------------PDRRFLLSCSEDSSVRLWSLD--TWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD 523 (707)
T ss_pred eec------------ccccceeeccCCcceeeeecc--cceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence 998 899999999999999999976 56667788899999995 58999999999999999999999
Q ss_pred CCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 001039 912 TSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANI 990 (1179)
Q Consensus 912 t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~i 990 (1179)
..++.+.+.+|-+.|.|+.|+ +.+++++||.|.+|++||+.+|..++.+.+|.++|.+++|||+|++|++|+.||.|.+
T Consensus 524 ~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 524 HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKI 603 (707)
T ss_pred cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEE
Confidence 999999999999999999999 6889999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCceeEEeecCCCCeEEEEE--cCCEEEEEeCCCcEEEEEccCC
Q 001039 991 WDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRG 1036 (1179)
Q Consensus 991 wD~~~~~~~~~~~~~~~~I~sl~~--~~~~l~sgs~dg~I~iwd~~~~ 1036 (1179)
||+.+++.+..+.+|.+.|.++.| +++.|++|+.|.+|++||+...
T Consensus 604 WDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 604 WDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999999999999999 5779999999999999998653
No 37
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.5e-31 Score=272.68 Aligned_cols=277 Identities=23% Similarity=0.397 Sum_probs=244.7
Q ss_pred cccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccce
Q 001039 764 ASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREV 841 (1179)
Q Consensus 764 ~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~ 841 (1179)
..||...|..+.|+|||+++|||+.| |.+|++....+ ....++||+++|..+.|.
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce------------------N~~~lkgHsgAVM~l~~~----- 99 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE------------------NFWVLKGHSGAVMELHGM----- 99 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc------------------ceeeeccccceeEeeeec-----
Confidence 47787888888999999999999999 99999886553 567788999999999998
Q ss_pred eccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecC---CCEEEEEeCCCcEEEEECCCCeEEEE
Q 001039 842 WDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSD---RGKVVSGSDDQSVLVWDKQTSQLLEE 918 (1179)
Q Consensus 842 ~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d---~~~l~sgs~dg~I~iwd~~t~~~~~~ 918 (1179)
.|++.++++|.|.+|+.||++ .++.....++|...|+++.|. ...+.+|+.||++++||+++...+++
T Consensus 100 -------~d~s~i~S~gtDk~v~~wD~~--tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t 170 (338)
T KOG0265|consen 100 -------RDGSHILSCGTDKTVRGWDAE--TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT 170 (338)
T ss_pred -------cCCCEEEEecCCceEEEEecc--cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc
Confidence 899999999999999999987 667778899999999988653 35678899999999999999888887
Q ss_pred eecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-
Q 001039 919 LKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG- 996 (1179)
Q Consensus 919 ~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~- 996 (1179)
+. ..-.++++.|. .++.+.+|+-|+.|++||++.+....++.+|.+.|+.+..+++|.++.+-+.|.++++||++..
T Consensus 171 ~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~ 249 (338)
T KOG0265|consen 171 FE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA 249 (338)
T ss_pred cc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccC
Confidence 75 35678999999 6888999999999999999999999999999999999999999999999999999999999853
Q ss_pred ---ceeEEeecCCC----CeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCC
Q 001039 997 ---RQMHKFLGHTK----WIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSD 1067 (1179)
Q Consensus 997 ---~~~~~~~~~~~----~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~D 1067 (1179)
+++..+.+|.. .....+|++ +.+.+|+.|..+++||......+..+.+|.+.|++++|+|....|.+++.|
T Consensus 250 p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sd 329 (338)
T KOG0265|consen 250 PSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSD 329 (338)
T ss_pred CCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccC
Confidence 44667776653 334556754 489999999999999999989999999999999999999999999999999
Q ss_pred CcEEEE
Q 001039 1068 GLLRFW 1073 (1179)
Q Consensus 1068 g~I~iw 1073 (1179)
.+|.+=
T Consensus 330 k~i~lg 335 (338)
T KOG0265|consen 330 KTIYLG 335 (338)
T ss_pred ceeEee
Confidence 998763
No 38
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.5e-33 Score=294.97 Aligned_cols=275 Identities=21% Similarity=0.433 Sum_probs=245.5
Q ss_pred cceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecccc
Q 001039 769 RSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVG 846 (1179)
Q Consensus 769 ~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~ 846 (1179)
-.|..+.|+|+|+.|++|+.. +.+|+..+-. -..++..|..+|.++.|+
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn-------------------FEtilQaHDs~Vr~m~ws---------- 147 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN-------------------FETILQAHDSPVRTMKWS---------- 147 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceee-------------------HHHHhhhhcccceeEEEc----------
Confidence 456777999999999999888 9999975322 234678899999999998
Q ss_pred ccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEecccc-ccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC
Q 001039 847 DREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHT-RTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHD 923 (1179)
Q Consensus 847 ~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~-~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~ 923 (1179)
.++.+++||+.+|.|++|+.+ ...++.+++|. ..|++ ++|++..+++++.||+|+|||....+..+.+.+|.
T Consensus 148 --~~g~wmiSgD~gG~iKyWqpn---mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHg 222 (464)
T KOG0284|consen 148 --HNGTWMISGDKGGMIKYWQPN---MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHG 222 (464)
T ss_pred --cCCCEEEEcCCCceEEecccc---hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCC
Confidence 899999999999999999976 33344555555 77774 68999999999999999999999999989999999
Q ss_pred CcEEEEEEeC-CCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe
Q 001039 924 AQVSCVRMLS-GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKF 1002 (1179)
Q Consensus 924 ~~V~~l~~s~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~ 1002 (1179)
-.|.+++|++ ...+++||.|..|++||.++|.++.++..|+..|..+.|++++++|++++.|..++++|+++.+.+..+
T Consensus 223 wdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~ 302 (464)
T KOG0284|consen 223 WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTY 302 (464)
T ss_pred CCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHh
Confidence 9999999994 678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEc---CCEEEEEeCCCcEEEEEccCCeeeEEee-cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1003 LGHTKWIRSIRMD---RDTVITGSDDWTARMWSISRGTCDAVLA-CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1003 ~~~~~~I~sl~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
++|...++++.|+ ++++.+|+.||.|..|.+...+++..+. +|...|++++|+|-|..|++|+.|.++++|.-..
T Consensus 303 r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 303 RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 9999999999995 5699999999999999998666655554 7999999999999999999999999999997554
No 39
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.2e-31 Score=270.85 Aligned_cols=284 Identities=20% Similarity=0.327 Sum_probs=249.6
Q ss_pred eEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEEC-CCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEe
Q 001039 875 LRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDK-QTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWD 950 (1179)
Q Consensus 875 ~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~-~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd 950 (1179)
....+.+|.+.|.. |+|+|..+++|+.|..|.+|++ ...+....+++|.++|..+.|. +++.+++++.|.+|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 34567899999984 6999999999999999999995 4456677889999999999999 899999999999999999
Q ss_pred CCCCeEEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEc--CCEEEEEeCCCc
Q 001039 951 VRTDTCVATVGRCSSAVLCMEYDDSTG-ILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWT 1027 (1179)
Q Consensus 951 ~~~~~~~~~~~~~~~~v~~l~~sp~~~-~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~--~~~l~sgs~dg~ 1027 (1179)
+++|++++.++.|.+-|.++.-+.-|. .+.+|+.||++++||+|+...++++ .....++++.|. ++.+.+|+-|+.
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~-~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF-ENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc-ccceeEEEEEecccccceeeccccCc
Confidence 999999999999999999998655454 5667889999999999998888776 455678999994 569999999999
Q ss_pred EEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc-ceEEEeecccCceE------EEEecC
Q 001039 1028 ARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGG-IKCVKNVTIHSSAI------LSINAG 1100 (1179)
Q Consensus 1028 I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~-~~~~~~~~~h~~~i------~sis~d 1100 (1179)
|++||++.+.....+.+|...|+.+..+++|.++.+-+.|.++++||++.... .+++..+.+|.... .+++|+
T Consensus 198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 99999999999999999999999999999999999999999999999986432 35577777765433 556899
Q ss_pred CCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001039 1101 DHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1174 (1179)
Q Consensus 1101 g~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWd 1174 (1179)
+..+.+|+.|..+++||.... .++-.+.||.+.|++++|+|...+|.+++.|.+|.+=+
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r---------------~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSR---------------RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCccccccccceEEEeecccc---------------cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 999999999999999998643 56778899999999999999999999999999998744
No 40
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.3e-30 Score=261.08 Aligned_cols=287 Identities=23% Similarity=0.408 Sum_probs=243.3
Q ss_pred eeEEEeccccccEEE--EecC-CCEEEEEeCCCcEEEEECCCC---eEEEEe-ecCCCcEEEEEEe-CCCEEEEEEcCCe
Q 001039 874 ELRATLKGHTRTVRA--INSD-RGKVVSGSDDQSVLVWDKQTS---QLLEEL-KGHDAQVSCVRML-SGERVLTASHDGT 945 (1179)
Q Consensus 874 ~~~~~l~~h~~~v~~--~s~d-~~~l~sgs~dg~I~iwd~~t~---~~~~~~-~~h~~~V~~l~~s-~~~~l~sgs~dg~ 945 (1179)
...+.+++|.+.+.. ++|. |..|++|+.|+.|++|+...+ .+...+ .+|+..|.+++|+ .|++|++|+.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 345788999998874 5676 778999999999999998853 344333 4799999999999 5889999999999
Q ss_pred EEEEeCCCC--eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---ceeEEeecCCCCeEEEEEcC--CE
Q 001039 946 VKMWDVRTD--TCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG---RQMHKFLGHTKWIRSIRMDR--DT 1018 (1179)
Q Consensus 946 I~iwd~~~~--~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~---~~~~~~~~~~~~I~sl~~~~--~~ 1018 (1179)
+.||.-..+ +++.++.+|...|.|++|+++|++||+++.|..|-+|.+..+ ++...+++|...|..+.|+| ++
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 999986644 688899999999999999999999999999999999998754 56778899999999999998 69
Q ss_pred EEEEeCCCcEEEEEcc---CCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEE
Q 001039 1019 VITGSDDWTARMWSIS---RGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAIL 1095 (1179)
Q Consensus 1019 l~sgs~dg~I~iwd~~---~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~ 1095 (1179)
|++++.|.+|++|+-. ...+..++.+|.+.|.+++|++.|..+++++.|++++||...+. -...|+..++
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~~Y 237 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LSGMHSRALY 237 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-------cchhcccceE
Confidence 9999999999999866 34688999999999999999999999999999999999985531 1124777888
Q ss_pred EEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeee-ecCCCcccEEEEEEcCC-CCEEEEEeCCCcEEEE
Q 001039 1096 SINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYR-TPQKTVAVVRCIASDLE-RKRICSGGRNGLLRLW 1173 (1179)
Q Consensus 1096 sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~-~~~~h~~~V~~v~fspd-g~~Lasgs~Dg~I~vW 1173 (1179)
.++.+...||+|+.|+.|++|.-.. +..-+.|+++. ....|...|++|+|.|. .++|++||+||.|++|
T Consensus 238 ~v~W~~~~IaS~ggD~~i~lf~~s~---------~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W 308 (312)
T KOG0645|consen 238 DVPWDNGVIASGGGDDAIRLFKESD---------SPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFW 308 (312)
T ss_pred eeeecccceEeccCCCEEEEEEecC---------CCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEE
Confidence 8888888999999999999998652 22223344443 45689999999999995 7899999999999999
Q ss_pred ECC
Q 001039 1174 EAT 1176 (1179)
Q Consensus 1174 dv~ 1176 (1179)
.+.
T Consensus 309 ~l~ 311 (312)
T KOG0645|consen 309 ELE 311 (312)
T ss_pred Eec
Confidence 975
No 41
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.98 E-value=3.7e-32 Score=289.72 Aligned_cols=273 Identities=18% Similarity=0.362 Sum_probs=242.3
Q ss_pred cEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEecc-
Q 001039 885 TVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGR- 962 (1179)
Q Consensus 885 ~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~- 962 (1179)
.+..+.|+|+.|++|+..|.+.+|+..+......+..|+.+|.++.|+ ++..+++|+.+|.|++|+..-.. ++.+..
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ah 178 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAH 178 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHhhHh
Confidence 344678999999999999999999986554444567899999999999 89999999999999999976443 444444
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC--EEEEEeCCCcEEEEEccCCeeeE
Q 001039 963 CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDA 1040 (1179)
Q Consensus 963 ~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~~~~ 1040 (1179)
|...|++++|+|+...+++++.||+|+|||....+....+.+|.-.|.++.|++. .+++|+.|..|++||.++|.++.
T Consensus 179 h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~ 258 (464)
T KOG0284|consen 179 HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA 258 (464)
T ss_pred hhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhh
Confidence 4589999999999999999999999999999999998999999999999999876 89999999999999999999999
Q ss_pred EeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ec-CCCEEEEEECCCcEEEEe
Q 001039 1041 VLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NA-GDHWLGIGAADNSMSLFH 1117 (1179)
Q Consensus 1041 ~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~-dg~~lasgs~Dg~I~iwd 1117 (1179)
++.+|...|..+.|++++++|+++|.|..++++|+++ .+.+..+++|...+.++ +| ...++.+|+.||.|..|.
T Consensus 259 tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~---mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~ 335 (464)
T KOG0284|consen 259 TLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT---MKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWV 335 (464)
T ss_pred hhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH---hHHHHHhhcchhhheeeccccccccceeeccCCCceEEEe
Confidence 9999999999999999999999999999999999997 67788888999999888 55 568899999999999999
Q ss_pred CCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001039 1118 RPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEA 1175 (1179)
Q Consensus 1118 ~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv 1175 (1179)
+.... .......+|.+.|++++|+|=|.+|++|+.|.++++|.-
T Consensus 336 v~~~~--------------p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 336 VGLEE--------------PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred ccccc--------------cccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 87321 223345689999999999999999999999999999964
No 42
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=6.6e-31 Score=275.20 Aligned_cols=286 Identities=19% Similarity=0.370 Sum_probs=254.5
Q ss_pred CCCCcccccCCcceE-EEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEE
Q 001039 758 DQQPAEASGIGRSWV-QSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALH 834 (1179)
Q Consensus 758 ~~~~~~~~gh~~~i~-~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~ 834 (1179)
.++..+....|-+|+ ++++.|..+++++|+.| |++||+.+++ ...++.||-..|..++
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-------------------LkltltGhi~~vr~va 200 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-------------------LKLTLTGHIETVRGVA 200 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-------------------EEEeecchhheeeeee
Confidence 344444444445555 55999999999999999 9999999998 6778999999999999
Q ss_pred eecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCC
Q 001039 835 CVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQT 912 (1179)
Q Consensus 835 ~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t 912 (1179)
+| +...|+.+++.|+.|+.||++ ..+.++.+.||-..|.|+ .|.-..|++|+.|.++++||+++
T Consensus 201 vS------------~rHpYlFs~gedk~VKCwDLe--~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt 266 (460)
T KOG0285|consen 201 VS------------KRHPYLFSAGEDKQVKCWDLE--YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT 266 (460)
T ss_pred ec------------ccCceEEEecCCCeeEEEech--hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc
Confidence 98 678899999999999999987 567778899999999987 67789999999999999999999
Q ss_pred CeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 001039 913 SQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991 (1179)
Q Consensus 913 ~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iw 991 (1179)
...+..+.||..+|..+.+. -+..+++|+.|++|++||++.|+...++..|+..+.+++.+|....+|+++.| .|+-|
T Consensus 267 r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w 345 (460)
T KOG0285|consen 267 RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQW 345 (460)
T ss_pred cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceec
Confidence 99999999999999999988 46679999999999999999999999999999999999999999999998876 68999
Q ss_pred eCCCCceeEEeecCCCCeEEEEEcC-CEEEEEeCCCcEEEEEccCCeeeEEeec--------CCcCEEEEEEecCCCEEE
Q 001039 992 DIRAGRQMHKFLGHTKWIRSIRMDR-DTVITGSDDWTARMWSISRGTCDAVLAC--------HAGPVQCVEYSSSDRGII 1062 (1179)
Q Consensus 992 D~~~~~~~~~~~~~~~~I~sl~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~--------h~~~V~~l~~spdg~~l~ 1062 (1179)
++..|..+..+.+|...|.+++.+. +.+++|+++|.+..||.++|...+.... ....|.+.+|+..|..|+
T Consensus 346 ~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rli 425 (460)
T KOG0285|consen 346 KLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLI 425 (460)
T ss_pred cCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEE
Confidence 9999999999999999999999954 5999999999999999999866554421 345799999999999999
Q ss_pred EEeCCCcEEEEEcCC
Q 001039 1063 TGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1063 sgs~Dg~I~iwd~~~ 1077 (1179)
+|..|.+|++|.-+.
T Consensus 426 t~eadKtIk~~keDe 440 (460)
T KOG0285|consen 426 TGEADKTIKMYKEDE 440 (460)
T ss_pred eccCCcceEEEeccc
Confidence 999999999997665
No 43
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.97 E-value=1.7e-30 Score=299.51 Aligned_cols=318 Identities=22% Similarity=0.341 Sum_probs=255.9
Q ss_pred EEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCC
Q 001039 833 LHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQT 912 (1179)
Q Consensus 833 v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t 912 (1179)
.+|++..+...|+.+++|+.+||.|-.|..|++|.+. ..+ .+.+++-. +...+=+.+.|-.+.+-|-.+
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~--p~k-l~~lk~~~--------~l~~~d~~sad~~~~~~D~~~ 440 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLT--PKK-LKKLKDAS--------DLSNIDTESADVDVDMLDDDS 440 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecc--hhh-hccccchh--------hhccccccccchhhhhccccC
Confidence 3333334444444455999999999999999999975 222 22333211 112222344455577777777
Q ss_pred CeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 001039 913 SQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIW 991 (1179)
Q Consensus 913 ~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iw 991 (1179)
+...+++.||.++|....|+ +.++|++++.|++|++|.+.+..++..+++|..+|+.+.|+|.|-++|+++.|++.++|
T Consensus 441 ~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLW 520 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLW 520 (707)
T ss_pred CceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeee
Confidence 77788899999999999999 57789999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCceeEEeecCCCCeEEEEEcCC--EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCc
Q 001039 992 DIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGL 1069 (1179)
Q Consensus 992 D~~~~~~~~~~~~~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~ 1069 (1179)
.....++.+.+.+|-+.|.|+.|+|+ ++++||.|.+||+||+.+|..++.+.||.++|++++|||+|++|++|+.||.
T Consensus 521 s~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~ 600 (707)
T KOG0263|consen 521 STDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL 600 (707)
T ss_pred ecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc
Confidence 99999999999999999999999776 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccC----C-----CCcccccee
Q 001039 1070 LRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSG----T-----GSKMSGWQL 1138 (1179)
Q Consensus 1070 I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~----~-----g~~~~~~~~ 1138 (1179)
|.+||+.+ ...+..+.+|++.|.++ +.+|..||+|+.|++|++||+.......... . ...-..-.+
T Consensus 601 I~iWDl~~---~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 677 (707)
T KOG0263|consen 601 IKIWDLAN---GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLL 677 (707)
T ss_pred EEEEEcCC---CcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcce
Confidence 99999998 56777888999988776 7899999999999999999986432210000 0 000011134
Q ss_pred eeecCCCcccEEEEEEcCCCCEEEEE
Q 001039 1139 YRTPQKTVAVVRCIASDLERKRICSG 1164 (1179)
Q Consensus 1139 ~~~~~~h~~~V~~v~fspdg~~Lasg 1164 (1179)
+..+.....+|.++.|....-.|+.|
T Consensus 678 lgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 678 LGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred eeeeeecCceEEEEEEeccceeEEec
Confidence 55555566689999998776555554
No 44
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.9e-29 Score=255.11 Aligned_cols=282 Identities=20% Similarity=0.350 Sum_probs=240.6
Q ss_pred ccccCCcceEEEEEccC-CCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEE-ecccCceEEEEeecc
Q 001039 763 EASGIGRSWVQSMFSRE-ASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRII-RGHAGAITALHCVTK 838 (1179)
Q Consensus 763 ~~~gh~~~i~~~~fSpd-g~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~gH~~~V~~v~~s~~ 838 (1179)
.+.||...+-.++|+|- |..||||+.| ||+|+...+.. -.+..++ .+|+..|.+++|+
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s----------------~~ck~vld~~hkrsVRsvAws-- 70 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS----------------WTCKTVLDDGHKRSVRSVAWS-- 70 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc----------------EEEEEeccccchheeeeeeec--
Confidence 35788888888999999 9999999999 99999885331 1144444 4799999999998
Q ss_pred cceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCC---
Q 001039 839 REVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTS--- 913 (1179)
Q Consensus 839 ~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~--- 913 (1179)
|.|++||+||-|.++.||.-.....+++.++.||...|-+ ++.+|++||+++.|+.|.||.+..+
T Consensus 71 ----------p~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEf 140 (312)
T KOG0645|consen 71 ----------PHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEF 140 (312)
T ss_pred ----------CCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcE
Confidence 8999999999999999999776677899999999999986 5899999999999999999998754
Q ss_pred eEEEEeecCCCcEEEEEEeC-CCEEEEEEcCCeEEEEeCCC---CeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 001039 914 QLLEELKGHDAQVSCVRMLS-GERVLTASHDGTVKMWDVRT---DTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVAN 989 (1179)
Q Consensus 914 ~~~~~~~~h~~~V~~l~~s~-~~~l~sgs~dg~I~iwd~~~---~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~ 989 (1179)
++...++.|...|..+.|++ .+.|++++.|++|++|+-.. -.+++++.+|...|.+++|++.|..+++++.|++++
T Consensus 141 ec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~ 220 (312)
T KOG0645|consen 141 ECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVS 220 (312)
T ss_pred EEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceE
Confidence 57788999999999999995 78899999999999998762 367899999999999999999999999999999999
Q ss_pred EEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCee-------eEEeecCCcCEEEEEEecC-CCEE
Q 001039 990 IWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTC-------DAVLACHAGPVQCVEYSSS-DRGI 1061 (1179)
Q Consensus 990 iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~-------~~~~~~h~~~V~~l~~spd-g~~l 1061 (1179)
||-..+.- -..|...+..++|....|++++.|+.|+++.-..+-. .+.-..|...|++++|.|. .++|
T Consensus 221 Iw~~~~~~----~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L 296 (312)
T KOG0645|consen 221 IWRLYTDL----SGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRL 296 (312)
T ss_pred eeeeccCc----chhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCce
Confidence 99865321 1246788999999977999999999999998654311 1123468889999999995 7889
Q ss_pred EEEeCCCcEEEEEcC
Q 001039 1062 ITGSSDGLLRFWEND 1076 (1179)
Q Consensus 1062 ~sgs~Dg~I~iwd~~ 1076 (1179)
++|+.||.|++|.+.
T Consensus 297 ~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 297 ASGGDDGIVNFWELE 311 (312)
T ss_pred eecCCCceEEEEEec
Confidence 999999999999864
No 45
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.9e-30 Score=273.19 Aligned_cols=317 Identities=18% Similarity=0.285 Sum_probs=251.5
Q ss_pred cccCCCcccccccCcccccCCCCCC-CCCCCCCCcccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCC
Q 001039 729 GYWGLSSIKGQSSLSNGMPSPLSKD-ATNDDQQPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPR 805 (1179)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~fSP~g~~-~~~~~~~~~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~ 805 (1179)
.|....+++.-++.++++.|-.-.. ..-.......+..|...|-.+.||++|+|+||++.| ..+|++......
T Consensus 184 ~~Q~d~cvyhnsldsvsll~Dh~c~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~---- 259 (519)
T KOG0293|consen 184 KYQRDSCVYHNSLDSVSLLSDHFCGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHF---- 259 (519)
T ss_pred HHHHhHhHHhcccchhhhhhhcccCcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcce----
Confidence 3333345555566666553322221 112334445567788899999999999999999999 889988754421
Q ss_pred CCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEec-cccc
Q 001039 806 KQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLK-GHTR 884 (1179)
Q Consensus 806 ~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~-~h~~ 884 (1179)
...+++.||..+|..+.|| ||.++|++|+.|..+++||+.. +.....+. +|..
T Consensus 260 ------------kl~~tlvgh~~~V~yi~wS------------PDdryLlaCg~~e~~~lwDv~t--gd~~~~y~~~~~~ 313 (519)
T KOG0293|consen 260 ------------KLKKTLVGHSQPVSYIMWS------------PDDRYLLACGFDEVLSLWDVDT--GDLRHLYPSGLGF 313 (519)
T ss_pred ------------eeeeeeecccCceEEEEEC------------CCCCeEEecCchHheeeccCCc--chhhhhcccCcCC
Confidence 1578999999999999998 8999999999999999999873 33333332 2233
Q ss_pred c--EEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC-CcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEe
Q 001039 885 T--VRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHD-AQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV 960 (1179)
Q Consensus 885 ~--v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~-~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 960 (1179)
. ..++.|||..+++|+.|+++..||.+ |..+...++-. ..|.+++.+ ||.++++.+.|..|++++.++......+
T Consensus 314 S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li 392 (519)
T KOG0293|consen 314 SVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI 392 (519)
T ss_pred CcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc
Confidence 3 34679999999999999999999987 44455555433 568999988 8999999999999999999877665544
Q ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEE--EEE---cCCEEEEEeCCCcEEEEEccC
Q 001039 961 GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRS--IRM---DRDTVITGSDDWTARMWSISR 1035 (1179)
Q Consensus 961 ~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~s--l~~---~~~~l~sgs~dg~I~iwd~~~ 1035 (1179)
....+|++.+.|.+++++++.-.+..+++||+...+.+.++.||...-.- -+| +..++++||+|+.|+||+..+
T Consensus 393 -se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s 471 (519)
T KOG0293|consen 393 -SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS 471 (519)
T ss_pred -cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC
Confidence 44678999999999999999999999999999999999999999874333 334 345999999999999999999
Q ss_pred CeeeEEeecCCcCEEEEEEecCC-CEEEEEeCCCcEEEEEcCC
Q 001039 1036 GTCDAVLACHAGPVQCVEYSSSD-RGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1036 ~~~~~~~~~h~~~V~~l~~spdg-~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
|+++.++.||...|++++|+|.. .++|++|.||+|+||....
T Consensus 472 gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 472 GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 99999999999999999999965 5689999999999998765
No 46
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=3.5e-31 Score=288.45 Aligned_cols=286 Identities=22% Similarity=0.360 Sum_probs=251.1
Q ss_pred ceeEEEeccccccEEEE--ec-CCCEEEEEeCCCcEEEEECCC-CeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEE
Q 001039 873 SELRATLKGHTRTVRAI--NS-DRGKVVSGSDDQSVLVWDKQT-SQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVK 947 (1179)
Q Consensus 873 ~~~~~~l~~h~~~v~~~--s~-d~~~l~sgs~dg~I~iwd~~t-~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~ 947 (1179)
......+.||+..|.++ .| .+.+|++++.|+.|+||++.. +++++++.+|..+|..++|+ ++..+++++.|+.++
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 34567899999999975 56 889999999999999999976 89999999999999999999 799999999999999
Q ss_pred EEeCCCCeEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE--cCCEEEEEeC
Q 001039 948 MWDVRTDTCVATVGRCSSAVLCMEYDDST-GILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSD 1024 (1179)
Q Consensus 948 iwd~~~~~~~~~~~~~~~~v~~l~~sp~~-~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~--~~~~l~sgs~ 1024 (1179)
+||+++|+++..+. ....+.|+.|+|++ +.+++|+.|+.|+.||+|+++.++.+..|-+.|..+.| .+..+++.+.
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 99999999999884 45678999999988 89999999999999999999999999999999999999 5669999999
Q ss_pred CCcEEEEEccCCeeeEEee-cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEE----EEec
Q 001039 1025 DWTARMWSISRGTCDAVLA-CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAIL----SINA 1099 (1179)
Q Consensus 1025 dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~----sis~ 1099 (1179)
|++++||+.+.+..++... .+.....++..+|+++++++-+.|+.|.++.+...-.....+.+.+|..+-+ .+||
T Consensus 363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp 442 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP 442 (503)
T ss_pred CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence 9999999998887665543 2334567899999999999999999999999876544555566778876543 4589
Q ss_pred CCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEE
Q 001039 1100 GDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLE-RKRICSGGRNGLLRLWE 1174 (1179)
Q Consensus 1100 dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspd-g~~Lasgs~Dg~I~vWd 1174 (1179)
||.+|++|+.||.+.+||..+. +++..++.|.+.+..+.|+|. ...+||||.||.|++|+
T Consensus 443 DG~~l~SGdsdG~v~~wdwkt~---------------kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 443 DGRTLCSGDSDGKVNFWDWKTT---------------KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCeEEeecCCccEEEeechhh---------------hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999999999999843 566778899999999999995 45799999999999996
No 47
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=8.9e-29 Score=276.16 Aligned_cols=280 Identities=30% Similarity=0.596 Sum_probs=248.3
Q ss_pred EEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEE
Q 001039 821 RIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVS 898 (1179)
Q Consensus 821 ~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~s 898 (1179)
+.+.+|.++|++++|+ ++++++++|+.||.|++|++. .......+.+|...+.. ++++++.+++
T Consensus 3 ~~~~~h~~~i~~~~~~------------~~~~~l~~~~~~g~i~i~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 68 (289)
T cd00200 3 RTLKGHTGGVTCVAFS------------PDGKLLATGSGDGTIKVWDLE--TGELLRTLKGHTGPVRDVAASADGTYLAS 68 (289)
T ss_pred hHhcccCCCEEEEEEc------------CCCCEEEEeecCcEEEEEEee--CCCcEEEEecCCcceeEEEECCCCCEEEE
Confidence 4577999999999998 789999999999999999976 34455677888888754 5788899999
Q ss_pred EeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeC-CCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCC
Q 001039 899 GSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS-GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTG 977 (1179)
Q Consensus 899 gs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~ 977 (1179)
++.||.|++||+.+++.+..+..|...+.++.|++ +..+++++.||.|.+||+.+++....+..|...+.+++|+|++.
T Consensus 69 ~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 148 (289)
T cd00200 69 GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT 148 (289)
T ss_pred EcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC
Confidence 99999999999999888889999999999999995 46666777799999999999999888888889999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC--EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEe
Q 001039 978 ILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYS 1055 (1179)
Q Consensus 978 ~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s 1055 (1179)
++++++.+|.|++||+++++.+..+..|...+.++.++++ .+++++.||.|++||+++++....+..|...+.+++|+
T Consensus 149 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 228 (289)
T cd00200 149 FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228 (289)
T ss_pred EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEc
Confidence 8888888999999999999999999999999999999765 89999999999999999999988888899999999999
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEe
Q 001039 1056 SSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFH 1117 (1179)
Q Consensus 1056 pdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd 1117 (1179)
+++.++++++.||.|++||+.+ ......+..|...+.++ ++++.++++++.||.+++|+
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRT---GECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCC---ceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999999988899999999987 45556666787777665 67889999999999999996
No 48
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1e-28 Score=275.68 Aligned_cols=280 Identities=30% Similarity=0.585 Sum_probs=248.0
Q ss_pred EEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCC
Q 001039 877 ATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRT 953 (1179)
Q Consensus 877 ~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~ 953 (1179)
..+.+|...|.++ +++++++++++.||.+++||+.+++....+..|...+..+.|+ +++.+++++.||.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 4567899999865 7889999999999999999999998888889999999999998 466999999999999999999
Q ss_pred CeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEEE
Q 001039 954 DTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMW 1031 (1179)
Q Consensus 954 ~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iw 1031 (1179)
++....+..+...+.++.|+++++++++++.+|.+.+||+++++....+..|...+.++.+++ .++++++.||.|++|
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 888888888888999999999998888888899999999999999999988999999999976 477777779999999
Q ss_pred EccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEEC
Q 001039 1032 SISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAA 1109 (1179)
Q Consensus 1032 d~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~ 1109 (1179)
|+++++....+..|...+.+++|+|+++.+++++.||.|++||+.. ...+..+..|...+.++ ++++.++++++.
T Consensus 163 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 239 (289)
T cd00200 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST---GKCLGTLRGHENGVNSVAFSPDGYLLASGSE 239 (289)
T ss_pred EccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCC---CceecchhhcCCceEEEEEcCCCcEEEEEcC
Confidence 9999999999999999999999999999999999999999999987 35555565677777665 677888888888
Q ss_pred CCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001039 1110 DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1174 (1179)
Q Consensus 1110 Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWd 1174 (1179)
||.|++||+... ........|...|.+++|+|++++|++++.||.|++|+
T Consensus 240 ~~~i~i~~~~~~---------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 240 DGTIRVWDLRTG---------------ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEcCCc---------------eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999998732 44555668889999999999999999999999999996
No 49
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.9e-29 Score=301.09 Aligned_cols=280 Identities=28% Similarity=0.530 Sum_probs=250.4
Q ss_pred CCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecc
Q 001039 767 IGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDL 844 (1179)
Q Consensus 767 h~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~ 844 (1179)
|..++.++.||+||+.+++++.+ +++|+..+... ...+.+.+|...|.+++|+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----------------~~~~~l~~h~~~v~~~~fs-------- 212 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----------------NLLRELSGHTRGVSDVAFS-------- 212 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-----------------hhhccccccccceeeeEEC--------
Confidence 36788889999999999999888 99999965441 1456679999999999998
Q ss_pred ccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEEEeecC
Q 001039 845 VGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGH 922 (1179)
Q Consensus 845 ~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h 922 (1179)
+|++++++|+.|++|++||+. ......+++.+|...|++ |+++++.+++|+.|++|+|||+++++++..+.+|
T Consensus 213 ----~d~~~l~s~s~D~tiriwd~~-~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h 287 (456)
T KOG0266|consen 213 ----PDGSYLLSGSDDKTLRIWDLK-DDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGH 287 (456)
T ss_pred ----CCCcEEEEecCCceEEEeecc-CCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeecc
Confidence 899999999999999999984 455777899999999995 5899999999999999999999999999999999
Q ss_pred CCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCe--EEEEeccCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 001039 923 DAQVSCVRML-SGERVLTASHDGTVKMWDVRTDT--CVATVGRCSS--AVLCMEYDDSTGILAAGGRDAVANIWDIRAGR 997 (1179)
Q Consensus 923 ~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~~~--~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~ 997 (1179)
.+.|++++|+ +++.+++++.||.|++||+.++. +...+..+.. .++++.|+|++.++++++.|+.+++||++.+.
T Consensus 288 s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~ 367 (456)
T KOG0266|consen 288 SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK 367 (456)
T ss_pred CCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc
Confidence 9999999999 79999999999999999999999 5677766554 49999999999999999999999999999999
Q ss_pred eeEEeecCCCCeEEEE---E--cCCEEEEEeCCCcEEEEEccCCeeeEEeecC-CcCEEEEEEecCCCEEEEEe--CCCc
Q 001039 998 QMHKFLGHTKWIRSIR---M--DRDTVITGSDDWTARMWSISRGTCDAVLACH-AGPVQCVEYSSSDRGIITGS--SDGL 1069 (1179)
Q Consensus 998 ~~~~~~~~~~~I~sl~---~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h-~~~V~~l~~spdg~~l~sgs--~Dg~ 1069 (1179)
.+..+.+|...+.++. . .+..+++|+.|+.|++||..++..+..+.+| ...+..+.+++..+++++++ .|+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~ 447 (456)
T KOG0266|consen 368 SVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGL 447 (456)
T ss_pred ceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCce
Confidence 9999999988644332 1 4569999999999999999999999999999 89999999999999999998 7899
Q ss_pred EEEEEcC
Q 001039 1070 LRFWEND 1076 (1179)
Q Consensus 1070 I~iwd~~ 1076 (1179)
+++|..+
T Consensus 448 ~~~w~~~ 454 (456)
T KOG0266|consen 448 IRLWKYD 454 (456)
T ss_pred EEEecCC
Confidence 9999754
No 50
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.4e-29 Score=278.80 Aligned_cols=277 Identities=21% Similarity=0.401 Sum_probs=248.9
Q ss_pred EEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEE
Q 001039 822 IIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSG 899 (1179)
Q Consensus 822 ~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sg 899 (1179)
.+..|+..|-+|.++ |...+++++-.+|.|.|||.+ +..+++.+.-...+|.+ |-...+++++|
T Consensus 8 k~~~rSdRVKsVd~H------------PtePw~la~LynG~V~IWnye--tqtmVksfeV~~~PvRa~kfiaRknWiv~G 73 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFH------------PTEPWILAALYNGDVQIWNYE--TQTMVKSFEVSEVPVRAAKFIARKNWIVTG 73 (794)
T ss_pred HhhccCCceeeeecC------------CCCceEEEeeecCeeEEEecc--cceeeeeeeecccchhhheeeeccceEEEe
Confidence 455689999999999 788899999999999999965 67777888877778874 56778899999
Q ss_pred eCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeC-CCEEEEEEcCCeEEEEeCCCC-eEEEEeccCCCcEEEEEEcC-CC
Q 001039 900 SDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS-GERVLTASHDGTVKMWDVRTD-TCVATVGRCSSAVLCMEYDD-ST 976 (1179)
Q Consensus 900 s~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~-~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp-~~ 976 (1179)
+.|..|+||+..+++.+..+..|.+.|.+++.++ ..+++++|.|-+|++||.+.+ .+.+++.+|..-|.+++|.| |.
T Consensus 74 sDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ 153 (794)
T KOG0276|consen 74 SDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP 153 (794)
T ss_pred cCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc
Confidence 9999999999999999999999999999999995 678999999999999999875 67889999999999999999 77
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE-cC---CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEE
Q 001039 977 GILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM-DR---DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCV 1052 (1179)
Q Consensus 977 ~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~-~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l 1052 (1179)
+.+++++-|++|++|.+.+..+..++.+|...|+++.+ .+ -++++|+.|.+|+|||..+.+|++++.+|...|..+
T Consensus 154 ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v 233 (794)
T KOG0276|consen 154 NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFV 233 (794)
T ss_pred cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEE
Confidence 89999999999999999999999999999999999999 22 299999999999999999999999999999999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEe--cCCCEEEEEECCCcEEE
Q 001039 1053 EYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSIN--AGDHWLGIGAADNSMSL 1115 (1179)
Q Consensus 1053 ~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis--~dg~~lasgs~Dg~I~i 1115 (1179)
+|+|.-..+++|++||+++||...+ .+....+...-.+++++. ..+..+++|.++|.|.+
T Consensus 234 ~fhp~lpiiisgsEDGTvriWhs~T---y~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 234 FFHPELPIIISGSEDGTVRIWNSKT---YKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EecCCCcEEEEecCCccEEEecCcc---eehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999999999999999999999888 555555666677788885 67778888888887754
No 51
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.5e-29 Score=276.52 Aligned_cols=274 Identities=20% Similarity=0.351 Sum_probs=248.8
Q ss_pred ccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeeccccee
Q 001039 765 SGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVW 842 (1179)
Q Consensus 765 ~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~ 842 (1179)
..|...|.++.|+|...+++++-.. |.+|+.++.. .++.+.-..-+|.+..|.
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt-------------------mVksfeV~~~PvRa~kfi------ 64 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT-------------------MVKSFEVSEVPVRAAKFI------ 64 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecccce-------------------eeeeeeecccchhhheee------
Confidence 4477889999999999998887655 9999999776 677888888899999997
Q ss_pred ccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCC-eEEEEe
Q 001039 843 DLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTS-QLLEEL 919 (1179)
Q Consensus 843 ~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~-~~~~~~ 919 (1179)
...+++++|++|+.|+||+.+ +.+.+..+..|.+-|.++ +|...++++++.|-+|++||.+.+ .+.+++
T Consensus 65 ------aRknWiv~GsDD~~IrVfnyn--t~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf 136 (794)
T KOG0276|consen 65 ------ARKNWIVTGSDDMQIRVFNYN--TGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF 136 (794)
T ss_pred ------eccceEEEecCCceEEEEecc--cceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE
Confidence 678999999999999999965 777889999999999976 899999999999999999999865 678899
Q ss_pred ecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCC
Q 001039 920 KGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS--TGILAAGGRDAVANIWDIRA 995 (1179)
Q Consensus 920 ~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~--~~~l~sgs~dg~I~iwD~~~ 995 (1179)
.||...|.+++|+ |.+.+++++-|++|++|.+.+..+..++.+|...|+|+.+-+. ..++++|+.|.++++||..+
T Consensus 137 eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt 216 (794)
T KOG0276|consen 137 EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT 216 (794)
T ss_pred cCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch
Confidence 9999999999999 5788999999999999999999999999999999999999874 46999999999999999999
Q ss_pred CceeEEeecCCCCeEEEEEcCC--EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEE
Q 001039 996 GRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLR 1071 (1179)
Q Consensus 996 ~~~~~~~~~~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~ 1071 (1179)
..+++++.||...|..+.|++. .+++|++||+++||+..+-+...++.-.-+.++|++-.+.++.++.|...|.|.
T Consensus 217 k~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 217 KSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred HHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence 9999999999999999999987 899999999999999988888888877788999999999888899988877654
No 52
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.6e-29 Score=251.35 Aligned_cols=278 Identities=19% Similarity=0.310 Sum_probs=244.9
Q ss_pred EEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCC
Q 001039 876 RATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVR 952 (1179)
Q Consensus 876 ~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~ 952 (1179)
...+.+|.++|.++ +-||++.++++.|.+|++||...|.+++++.+|...|..++.+ ++..+++|+.|..|.+||++
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 46788999999975 7899999999999999999999999999999999999999988 88899999999999999999
Q ss_pred CCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEE
Q 001039 953 TDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRA--GRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARM 1030 (1179)
Q Consensus 953 ~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~--~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~i 1030 (1179)
+|+..+.+.+|...|+.+.|+.+...+++|+.|..+++||.++ .++++.+......|.++...+..+++|+.||++|.
T Consensus 90 TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRt 169 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRT 169 (307)
T ss_pred cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEE
Confidence 9999999999999999999999999999999999999999986 46788888888999999999999999999999999
Q ss_pred EEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEE----EecCCCEEEE
Q 001039 1031 WSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILS----INAGDHWLGI 1106 (1179)
Q Consensus 1031 wd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~s----is~dg~~las 1106 (1179)
||++.|+....+- ..+|++++|++|++..++++.|+++++.|-.+ .+.++..++|...-+. ++.....+++
T Consensus 170 ydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~t---GklL~sYkGhkn~eykldc~l~qsdthV~s 244 (307)
T KOG0316|consen 170 YDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKET---GKLLKSYKGHKNMEYKLDCCLNQSDTHVFS 244 (307)
T ss_pred EEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccch---hHHHHHhcccccceeeeeeeecccceeEEe
Confidence 9999998766654 45899999999999999999999999999998 4666677788776544 4567789999
Q ss_pred EECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCccc-EEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001039 1107 GAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAV-VRCIASDLERKRICSGGRNGLLRLWE 1174 (1179)
Q Consensus 1107 gs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~-V~~v~fspdg~~Lasgs~Dg~I~vWd 1174 (1179)
|++||.|++||+... ..+..+..|... |.+++++|.-..++++. ++.+..|.
T Consensus 245 gSEDG~Vy~wdLvd~---------------~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 245 GSEDGKVYFWDLVDE---------------TQISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred ccCCceEEEEEeccc---------------eeeeeeccCCceeEEeeecccCccceeEec-CCceecee
Confidence 999999999999743 344455566666 89999999887777776 44466664
No 53
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.2e-28 Score=294.05 Aligned_cols=282 Identities=27% Similarity=0.486 Sum_probs=249.3
Q ss_pred EEeccc-cccEE--EEecCCCEEEEEeCCCcEEEEECCCCe--EEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEe
Q 001039 877 ATLKGH-TRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQ--LLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWD 950 (1179)
Q Consensus 877 ~~l~~h-~~~v~--~~s~d~~~l~sgs~dg~I~iwd~~t~~--~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd 950 (1179)
..+.+| ...|. .++++|+.+++++.|+.+++|+..+++ ....+.+|...|.+++|+ ++.++++|+.|++|++||
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 444443 45555 469999999999999999999998887 777788999999999999 677999999999999999
Q ss_pred C-CCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEc--CCEEEEEeCCCc
Q 001039 951 V-RTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWT 1027 (1179)
Q Consensus 951 ~-~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~--~~~l~sgs~dg~ 1027 (1179)
+ ..+..++++.+|...|++++|+|+|+.+++|+.|++|++||+++++++..+.+|...|++++++ +..+++++.||.
T Consensus 232 ~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~ 311 (456)
T KOG0266|consen 232 LKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT 311 (456)
T ss_pred ccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCcc
Confidence 9 5568999999999999999999999999999999999999999999999999999999999995 559999999999
Q ss_pred EEEEEccCCe--eeEEeecCCcC--EEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE-----e
Q 001039 1028 ARMWSISRGT--CDAVLACHAGP--VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI-----N 1098 (1179)
Q Consensus 1028 I~iwd~~~~~--~~~~~~~h~~~--V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si-----s 1098 (1179)
|++||+.++. +...+..+... +++++|+|+++++++++.|+.+++||+.. ..+.....+|...+.++ +
T Consensus 312 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~---~~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 312 IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRS---GKSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred EEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccC---CcceeeecccCCcceeEeccccc
Confidence 9999999999 56777776655 99999999999999999999999999998 56666777777754333 5
Q ss_pred cCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCC-cccEEEEEEcCCCCEEEEEe--CCCcEEEEEC
Q 001039 1099 AGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKT-VAVVRCIASDLERKRICSGG--RNGLLRLWEA 1175 (1179)
Q Consensus 1099 ~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h-~~~V~~v~fspdg~~Lasgs--~Dg~I~vWdv 1175 (1179)
+++.++.+|+.|+.|++||..+. ..+....+| ...+..++++|..+++++++ .|+.+++|..
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~---------------~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSG---------------GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCcc---------------chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 78999999999999999999843 455667788 89999999999999999998 7999999986
Q ss_pred C
Q 001039 1176 T 1176 (1179)
Q Consensus 1176 ~ 1176 (1179)
+
T Consensus 454 ~ 454 (456)
T KOG0266|consen 454 D 454 (456)
T ss_pred C
Confidence 4
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=6.3e-28 Score=309.40 Aligned_cols=295 Identities=21% Similarity=0.326 Sum_probs=237.6
Q ss_pred EEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCC---Cc---eeEEEeccccccEEE--Eec-C
Q 001039 822 IIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLR---GS---ELRATLKGHTRTVRA--INS-D 892 (1179)
Q Consensus 822 ~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~---~~---~~~~~l~~h~~~v~~--~s~-d 892 (1179)
.+.+|.+.|++++|+ ++|+++|+|+.||+|+|||.... .. .....+.+ ...+.+ +++ +
T Consensus 478 ~~~~~~~~V~~i~fs------------~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~ 544 (793)
T PLN00181 478 DLLNSSNLVCAIGFD------------RDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYI 544 (793)
T ss_pred cccCCCCcEEEEEEC------------CCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCC
Confidence 356699999999998 89999999999999999996421 00 11222333 344554 433 5
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEE
Q 001039 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCM 970 (1179)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l 970 (1179)
+.++++++.||+|++||+.+++.+..+.+|.+.|++++|+ ++..+++|+.||+|++||++++..+..+..+ ..+.++
T Consensus 545 ~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v 623 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCV 623 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEE
Confidence 7899999999999999999999999999999999999998 4678999999999999999999988888644 678999
Q ss_pred EEc-CCCCEEEEEeCCCeEEEEeCCCCc-eeEEeecCCCCeEEEEE-cCCEEEEEeCCCcEEEEEccCC------eeeEE
Q 001039 971 EYD-DSTGILAAGGRDAVANIWDIRAGR-QMHKFLGHTKWIRSIRM-DRDTVITGSDDWTARMWSISRG------TCDAV 1041 (1179)
Q Consensus 971 ~~s-p~~~~l~sgs~dg~I~iwD~~~~~-~~~~~~~~~~~I~sl~~-~~~~l~sgs~dg~I~iwd~~~~------~~~~~ 1041 (1179)
.|+ +++.++++|+.||.|++||+++++ .+..+.+|...|.++.| +++.+++++.|++|++||++.+ ..+..
T Consensus 624 ~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~ 703 (793)
T PLN00181 624 QFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHS 703 (793)
T ss_pred EEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEE
Confidence 995 579999999999999999998876 46778899999999999 5679999999999999999743 56788
Q ss_pred eecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCCCC
Q 001039 1042 LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQE 1121 (1179)
Q Consensus 1042 ~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~ 1121 (1179)
+.+|...+++++|++++++|++|+.||.|++|+..... .+.. . .....
T Consensus 704 ~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~---~~~s----------~-------------------~~~~~ 751 (793)
T PLN00181 704 FMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM---PVLS----------Y-------------------KFKTI 751 (793)
T ss_pred EcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC---ceEE----------E-------------------ecccC
Confidence 88999999999999999999999999999999976521 1110 0 00000
Q ss_pred CcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001039 1122 RLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEA 1175 (1179)
Q Consensus 1122 ~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv 1175 (1179)
.. . .+ .....|...|.+++|+|++..|++|+.||+|+||++
T Consensus 752 ~~--~--~~---------~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 752 DP--V--SG---------LEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred Cc--c--cc---------cccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 00 0 00 011245667999999999999999999999999986
No 55
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.6e-29 Score=267.61 Aligned_cols=282 Identities=18% Similarity=0.338 Sum_probs=239.4
Q ss_pred EEEeccccccEE--EEecCCCEEEEEeCCCcEEEEECCCC---eEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEE
Q 001039 876 RATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTS---QLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMW 949 (1179)
Q Consensus 876 ~~~l~~h~~~v~--~~s~d~~~l~sgs~dg~I~iwd~~t~---~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iw 949 (1179)
.+.+..|+..|+ .||++|++||+++.|.+..+|++... +...++.+|..+|..+.|+ |++++++|+.|..+.+|
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 467888999998 56999999999999999999987554 4577889999999999999 67889999999999999
Q ss_pred eCCCCeEEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCC-CCeEEEEE--cCCEEEEEeCC
Q 001039 950 DVRTDTCVATVGR-CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHT-KWIRSIRM--DRDTVITGSDD 1025 (1179)
Q Consensus 950 d~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~-~~I~sl~~--~~~~l~sgs~d 1025 (1179)
|+.+|.....+.. +...+.+++|.|||..+++|+.|+.+..||+. |+.....++.. ..|.++++ ++..+++.+.|
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVD 375 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecc
Confidence 9999999888753 46789999999999999999999999999986 44455554443 45777776 67799999999
Q ss_pred CcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEe-----cC
Q 001039 1026 WTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSIN-----AG 1100 (1179)
Q Consensus 1026 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis-----~d 1100 (1179)
..|++++..+......+. ...+|++++.|.||+++++.-.+..+++||+.. ...+..+.||...-.-+. .+
T Consensus 376 ~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e---~~lv~kY~Ghkq~~fiIrSCFgg~~ 451 (519)
T KOG0293|consen 376 KKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEE---NKLVRKYFGHKQGHFIIRSCFGGGN 451 (519)
T ss_pred cceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecch---hhHHHHhhcccccceEEEeccCCCC
Confidence 999999988776655444 567899999999999999999999999999997 566667778876654441 35
Q ss_pred CCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 001039 1101 DHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLE-RKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1101 g~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspd-g~~Lasgs~Dg~I~vWdv~t 1177 (1179)
..++++||+|+.|+||+..+ | +++..+.||...|+||+|+|. -.++||||+||+||||....
T Consensus 452 ~~fiaSGSED~kvyIWhr~s---------g------kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 452 DKFIASGSEDSKVYIWHRIS---------G------KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cceEEecCCCceEEEEEccC---------C------ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 68999999999999999883 4 788889999999999999994 56899999999999998763
No 56
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.2e-28 Score=278.81 Aligned_cols=336 Identities=17% Similarity=0.313 Sum_probs=274.8
Q ss_pred cceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecccc
Q 001039 769 RSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVG 846 (1179)
Q Consensus 769 ~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~ 846 (1179)
..+..++|+|.-.++.++--. |++||..-+. ++..+..|.|+|.+|+|+
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~t-------------------li~rFdeHdGpVRgv~FH---------- 60 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT-------------------LIDRFDEHDGPVRGVDFH---------- 60 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhhhh-------------------HHhhhhccCCccceeeec----------
Confidence 456678999999999988655 9999999777 888999999999999999
Q ss_pred ccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCC
Q 001039 847 DREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDA 924 (1179)
Q Consensus 847 ~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~ 924 (1179)
|++.+++|||+|-+|++|+.. ...+..++.||-+-|.. |++.-.+++++|.|.+|+|||+.+++++..+.||..
T Consensus 61 --~~qplFVSGGDDykIkVWnYk--~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH 136 (1202)
T KOG0292|consen 61 --PTQPLFVSGGDDYKIKVWNYK--TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH 136 (1202)
T ss_pred --CCCCeEEecCCccEEEEEecc--cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce
Confidence 889999999999999999965 77888999999999885 578888999999999999999999999999999999
Q ss_pred cEEEEEEeC-CCEEEEEEcCCeEEEEeCCCC---------------------------e--EEEEeccCCCcEEEEEEcC
Q 001039 925 QVSCVRMLS-GERVLTASHDGTVKMWDVRTD---------------------------T--CVATVGRCSSAVLCMEYDD 974 (1179)
Q Consensus 925 ~V~~l~~s~-~~~l~sgs~dg~I~iwd~~~~---------------------------~--~~~~~~~~~~~v~~l~~sp 974 (1179)
.|.|..|++ .+.++++|-|.+|++||+..- . ....+.+|+..|+.++|+|
T Consensus 137 YVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp 216 (1202)
T KOG0292|consen 137 YVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP 216 (1202)
T ss_pred EEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence 999999996 889999999999999998421 0 1234578999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCce--eEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEE
Q 001039 975 STGILAAGGRDAVANIWDIRAGRQ--MHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQ 1050 (1179)
Q Consensus 975 ~~~~l~sgs~dg~I~iwD~~~~~~--~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~ 1050 (1179)
.-..+++|+.|..|++|.+...+. +.+..+|.+.|.++-|+| +.+++.|+|++|++||+...+.+.++....+..+
T Consensus 217 TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW 296 (1202)
T KOG0292|consen 217 TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW 296 (1202)
T ss_pred CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEE
Confidence 999999999999999999876543 556789999999999988 6999999999999999999999999998889999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCC
Q 001039 1051 CVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTG 1130 (1179)
Q Consensus 1051 ~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g 1130 (1179)
.++-+|..+.+++|...| +.+|.++.. .++.+++-+ .++.+ .|..|+-+|+.+.+-..+
T Consensus 297 ~laahP~lNLfAAgHDsG-m~VFkleRE-------------rpa~~v~~n-~LfYv--kd~~i~~~d~~t~~d~~v---- 355 (1202)
T KOG0292|consen 297 ILAAHPELNLFAAGHDSG-MIVFKLERE-------------RPAYAVNGN-GLFYV--KDRFIRSYDLRTQKDTAV---- 355 (1202)
T ss_pred EEEecCCcceeeeecCCc-eEEEEEccc-------------CceEEEcCC-EEEEE--ccceEEeeecccccccee----
Confidence 999999999998886555 668877641 122333322 23333 288999999875321100
Q ss_pred CccccceeeeecCCCcccEEEEEEcCCCCEEEEE
Q 001039 1131 SKMSGWQLYRTPQKTVAVVRCIASDLERKRICSG 1164 (1179)
Q Consensus 1131 ~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasg 1164 (1179)
..++.+.....++.++.++|..+.+..+
T Consensus 356 ------~~lr~~g~~~~~~~smsYNpae~~vlic 383 (1202)
T KOG0292|consen 356 ------ASLRRPGTLWQPPRSLSYNPAENAVLIC 383 (1202)
T ss_pred ------EeccCCCcccCCcceeeeccccCeEEEE
Confidence 1112222223567889999876654444
No 57
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=1.4e-29 Score=275.95 Aligned_cols=283 Identities=22% Similarity=0.378 Sum_probs=243.9
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEE
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKV 896 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l 896 (1179)
.++.+.||+..|+++.|.| ..+.+|++|+.|+.|+||++. ....+++++.||..+|.+ ++.+|..+
T Consensus 206 ~~~~~~gH~kgvsai~~fp-----------~~~hLlLS~gmD~~vklW~vy-~~~~~lrtf~gH~k~Vrd~~~s~~g~~f 273 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFP-----------KKGHLLLSGGMDGLVKLWNVY-DDRRCLRTFKGHRKPVRDASFNNCGTSF 273 (503)
T ss_pred heeeccCCccccchhhhcc-----------ceeeEEEecCCCceEEEEEEe-cCcceehhhhcchhhhhhhhccccCCee
Confidence 6788999999999999984 379999999999999999987 467888999999999995 58899999
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CC-CEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcC
Q 001039 897 VSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SG-ERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDD 974 (1179)
Q Consensus 897 ~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp 974 (1179)
++++.|+.+++||+++|+++..+. ....++|+.|. ++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-+
T Consensus 274 LS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~ 352 (503)
T KOG0282|consen 274 LSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVD 352 (503)
T ss_pred eeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEcc
Confidence 999999999999999999999987 45678999998 34 7899999999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEee---cCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCC---eeeEEeecCC--
Q 001039 975 STGILAAGGRDAVANIWDIRAGRQMHKFL---GHTKWIRSIRMDRDTVITGSDDWTARMWSISRG---TCDAVLACHA-- 1046 (1179)
Q Consensus 975 ~~~~l~sgs~dg~I~iwD~~~~~~~~~~~---~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~---~~~~~~~~h~-- 1046 (1179)
+|+.+++.+.|+.+++|+.+.+-.++... .|..+...+..++..+++-+.|+.|.++.+... ...+.+.+|.
T Consensus 353 ~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~va 432 (503)
T KOG0282|consen 353 EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVA 432 (503)
T ss_pred CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceecc
Confidence 99999999999999999999887665432 344444444456679999999999999986543 2334566775
Q ss_pred cCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEe--c-CCCEEEEEECCCcEEEEe
Q 001039 1047 GPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSIN--A-GDHWLGIGAADNSMSLFH 1117 (1179)
Q Consensus 1047 ~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis--~-dg~~lasgs~Dg~I~iwd 1117 (1179)
+.-..+.|||||++|++|+.||.+.+||.++ .+.+..++.|...++.+. | ....+|+++.||.|++||
T Consensus 433 Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt---~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 433 GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT---TKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CceeeEEEcCCCCeEEeecCCccEEEeechh---hhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 4456789999999999999999999999999 677888889988887774 4 457899999999999996
No 58
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=3.8e-29 Score=250.55 Aligned_cols=282 Identities=22% Similarity=0.400 Sum_probs=243.1
Q ss_pred EEeccccccEEEE-----ecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEe
Q 001039 877 ATLKGHTRTVRAI-----NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWD 950 (1179)
Q Consensus 877 ~~l~~h~~~v~~~-----s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd 950 (1179)
.+..||+.+|..+ .|+|-+|++++.||.-.+-+-++|.-+.++.+|.+.|++.... +..+-++++.|-+-++||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 4567899999854 5899999999999999999999999999999999999999888 556677899999999999
Q ss_pred CCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEeecCCCCeEEEEE--cCCEEEEEeCCCc
Q 001039 951 VRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR-QMHKFLGHTKWIRSIRM--DRDTVITGSDDWT 1027 (1179)
Q Consensus 951 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~-~~~~~~~~~~~I~sl~~--~~~~l~sgs~dg~ 1027 (1179)
.-+|..+..+ .|..-|.+++|+.|.++|++|+.+..+++||++..+ +...+.+|.+.|..+.| ..+.+++.+.|++
T Consensus 88 a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t 166 (334)
T KOG0278|consen 88 AVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT 166 (334)
T ss_pred hhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence 9999999888 678899999999999999999999999999998764 56778999999999999 4458888899999
Q ss_pred EEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeeccc-CceEEEEecCCCEEEE
Q 001039 1028 ARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIH-SSAILSINAGDHWLGI 1106 (1179)
Q Consensus 1028 I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h-~~~i~sis~dg~~las 1106 (1179)
||+||.++++.++++. ...+|+++.++++|++|.++ ..+.|.+||..+ ...++..... +..-.+++|+...+++
T Consensus 167 VRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaks---f~~lKs~k~P~nV~SASL~P~k~~fVa 241 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKS---FGLLKSYKMPCNVESASLHPKKEFFVA 241 (334)
T ss_pred eEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEecccc---ccceeeccCccccccccccCCCceEEe
Confidence 9999999999999988 57899999999999987666 556799999998 4555544332 2233566899999999
Q ss_pred EECCCcEEEEeCCCCCcCcccCCCCccccceeeee-cCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 001039 1107 GAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRT-PQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATINI 1179 (1179)
Q Consensus 1107 gs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~-~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg~ 1179 (1179)
|+.|+.++.||.. +|.. +.. ..+|.++|.||.|+|||..-|+||+||+|++|.+..++
T Consensus 242 Gged~~~~kfDy~---------TgeE------i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 242 GGEDFKVYKFDYN---------TGEE------IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred cCcceEEEEEecc---------CCce------eeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 9999999999998 4432 222 47999999999999999999999999999999987653
No 59
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.5e-28 Score=258.72 Aligned_cols=286 Identities=24% Similarity=0.440 Sum_probs=240.6
Q ss_pred CCCcccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEee
Q 001039 759 QQPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCV 836 (1179)
Q Consensus 759 ~~~~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s 836 (1179)
.++..+.-|..=|..+.-. +..+.+|+.| +|+||..+. ..+.+.||.++|.+++|.
T Consensus 96 P~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk--------------------~~~~~~Ght~~ik~v~~v 153 (423)
T KOG0313|consen 96 PKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK--------------------SIKTIVGHTGPIKSVAWV 153 (423)
T ss_pred CCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCc--------------------eEEEEecCCcceeeeEEE
Confidence 3566666665555555555 7899999999 999998743 578999999999999987
Q ss_pred cccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCce--eEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCC
Q 001039 837 TKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSE--LRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQT 912 (1179)
Q Consensus 837 ~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~--~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t 912 (1179)
..+ +....++++|.|.++++|.++..... .....+||...|-++ .++|..+++|+.|.+|.+|+..+
T Consensus 154 ~~n---------~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~ 224 (423)
T KOG0313|consen 154 IKN---------SSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVET 224 (423)
T ss_pred ecC---------CccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCC
Confidence 321 33447999999999999998743332 233445999999987 48899999999999999999321
Q ss_pred -------------------------CeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcE
Q 001039 913 -------------------------SQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAV 967 (1179)
Q Consensus 913 -------------------------~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v 967 (1179)
+.++.++.||.++|.++.|++...+++++.|.+|+.||+.++..+.++.+ +..+
T Consensus 225 ~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl 303 (423)
T KOG0313|consen 225 DEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSL 303 (423)
T ss_pred CccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-Ccce
Confidence 23566788999999999999999999999999999999999999888754 5678
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---eeEEeecCCCCeEEEEEcCC---EEEEEeCCCcEEEEEccCCe-eeE
Q 001039 968 LCMEYDDSTGILAAGGRDAVANIWDIRAGR---QMHKFLGHTKWIRSIRMDRD---TVITGSDDWTARMWSISRGT-CDA 1040 (1179)
Q Consensus 968 ~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~---~~~~~~~~~~~I~sl~~~~~---~l~sgs~dg~I~iwd~~~~~-~~~ 1040 (1179)
.|++++|..++|++|+.|..+++||.+++. ...++.+|.+.|.++.|++. .+++|+.|+++++||+++.+ ++.
T Consensus 304 ~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~ply 383 (423)
T KOG0313|consen 304 NCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLY 383 (423)
T ss_pred eEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcce
Confidence 999999999999999999999999999863 35678899999999999765 89999999999999999987 899
Q ss_pred EeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1041 VLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1041 ~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
.+.+|...|.++.|. ++..+++|+.|.+|+|+....
T Consensus 384 dI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 384 DIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred eeccCCceEEEEecc-CCceEEeccCcceEEEecccc
Confidence 999999999999998 467899999999999986543
No 60
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.5e-28 Score=240.50 Aligned_cols=277 Identities=24% Similarity=0.399 Sum_probs=236.1
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEE
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKV 896 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l 896 (1179)
..+++..|+++|.++.|+ -||+|.++++.|.+|++|++. ...+++++.+|...|.. .+.|+..+
T Consensus 9 r~~~l~~~qgaV~avryN------------~dGnY~ltcGsdrtvrLWNp~--rg~liktYsghG~EVlD~~~s~Dnskf 74 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYN------------VDGNYCLTCGSDRTVRLWNPL--RGALIKTYSGHGHEVLDAALSSDNSKF 74 (307)
T ss_pred hceeecccccceEEEEEc------------cCCCEEEEcCCCceEEeeccc--ccceeeeecCCCceeeecccccccccc
Confidence 577899999999999998 899999999999999999975 67788999999999985 58899999
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCC--eEEEEeccCCCcEEEEEEc
Q 001039 897 VSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTD--TCVATVGRCSSAVLCMEYD 973 (1179)
Q Consensus 897 ~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~--~~~~~~~~~~~~v~~l~~s 973 (1179)
++|+.|..+.+||+.+|+.++.+.+|.+.|+.+.|+ +...+++|+.|.++++||.++. ++++.+....+.|.++..+
T Consensus 75 ~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~ 154 (307)
T KOG0316|consen 75 ASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA 154 (307)
T ss_pred ccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec
Confidence 999999999999999999999999999999999999 5778899999999999999864 6788888888899998875
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE--cCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEE-
Q 001039 974 DSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQ- 1050 (1179)
Q Consensus 974 p~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~- 1050 (1179)
+..+++|+.||+++.||++.|.....+.+| +|+++++ +++..++++.|+++++.|-.+|+.++.+++|.+.-.
T Consensus 155 --~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eyk 230 (307)
T KOG0316|consen 155 --EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYK 230 (307)
T ss_pred --ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceee
Confidence 557999999999999999999887766555 5777777 567999999999999999999999999999987544
Q ss_pred -EEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCce-EEEE--ecCCCEEEEEECCCcEEEEe
Q 001039 1051 -CVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSA-ILSI--NAGDHWLGIGAADNSMSLFH 1117 (1179)
Q Consensus 1051 -~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~-i~si--s~dg~~lasgs~Dg~I~iwd 1117 (1179)
.++++.....+++|++||.|.+||+.+ ...+..+..+... +.++ +|.-..+.++.. +.+..|-
T Consensus 231 ldc~l~qsdthV~sgSEDG~Vy~wdLvd---~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 231 LDCCLNQSDTHVFSGSEDGKVYFWDLVD---ETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred eeeeecccceeEEeccCCceEEEEEecc---ceeeeeeccCCceeEEeeecccCccceeEecC-Cceecee
Confidence 456777788999999999999999998 4556666666555 5555 465555555543 3455554
No 61
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=4e-28 Score=288.06 Aligned_cols=272 Identities=28% Similarity=0.514 Sum_probs=248.5
Q ss_pred cceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEE-EecccCceEEEEeecccceeccc
Q 001039 769 RSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRI-IRGHAGAITALHCVTKREVWDLV 845 (1179)
Q Consensus 769 ~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~gH~~~V~~v~~s~~~~~~~~~ 845 (1179)
..+++..|. +.++.+++.+ |++||..++. .+.. +.||.+.|+++++.
T Consensus 209 ~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~-------------------~i~~~l~GH~g~V~~l~~~--------- 258 (537)
T KOG0274|consen 209 HVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGY-------------------LILTRLVGHFGGVWGLAFP--------- 258 (537)
T ss_pred chhhhheee--cCeEEecCCCceeEEeecccce-------------------EEEeeccCCCCCceeEEEe---------
Confidence 344555777 4467777777 9999999887 5565 99999999999995
Q ss_pred cccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCc
Q 001039 846 GDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQ 925 (1179)
Q Consensus 846 ~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~ 925 (1179)
.-+.+|++|+.|.++++||.. .+.+...+.+|...+.+++..+..+++|+.|.+|++|++.++..+..+.+|.++
T Consensus 259 ---~~~~~lvsgS~D~t~rvWd~~--sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~ 333 (537)
T KOG0274|consen 259 ---SGGDKLVSGSTDKTERVWDCS--TGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGP 333 (537)
T ss_pred ---cCCCEEEEEecCCcEEeEecC--CCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEecccccc
Confidence 458899999999999999954 778889999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeEEeec
Q 001039 926 VSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG-RQMHKFLG 1004 (1179)
Q Consensus 926 V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~-~~~~~~~~ 1004 (1179)
|.++... +.++++|+.||+|++||+.+++++.++.+|...|.++.+... ..+++|+.|+.|++||+++. +++..+.+
T Consensus 334 V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~ 411 (537)
T KOG0274|consen 334 VNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQG 411 (537)
T ss_pred EEEEEec-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcC
Confidence 9999987 889999999999999999999999999999999999988766 88999999999999999999 99999999
Q ss_pred CCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeec-CCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 001039 1005 HTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLAC-HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAG 1079 (1179)
Q Consensus 1005 ~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~ 1079 (1179)
|..-+.++...++.+++++.||+|++||..+++++.++.+ |.+.|+++++. ...+++++.||.+++||++++.
T Consensus 412 h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 412 HTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred CcccccccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCc
Confidence 9999999999999999999999999999999999999998 67889988886 5678899999999999999954
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=5.2e-27 Score=300.98 Aligned_cols=285 Identities=19% Similarity=0.297 Sum_probs=234.2
Q ss_pred cccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccce
Q 001039 764 ASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREV 841 (1179)
Q Consensus 764 ~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~ 841 (1179)
+.+|...|.+++|+|||+++|+|+.| |++|+..+....+. ........+.+ ...|.+++|++
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-----------~~~~~~~~~~~-~~~v~~l~~~~---- 542 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-----------DIHYPVVELAS-RSKLSGICWNS---- 542 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc-----------ccccceEEecc-cCceeeEEecc----
Confidence 45578888889999999999999998 99999864321100 00112233333 46799999974
Q ss_pred eccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ec-CCCEEEEEeCCCcEEEEECCCCeEEEE
Q 001039 842 WDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NS-DRGKVVSGSDDQSVLVWDKQTSQLLEE 918 (1179)
Q Consensus 842 ~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~-d~~~l~sgs~dg~I~iwd~~t~~~~~~ 918 (1179)
.++.+|++|+.||+|++||+. +......+.+|...|+++ ++ ++.+|++|+.||+|++||+.+++.+..
T Consensus 543 -------~~~~~las~~~Dg~v~lWd~~--~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~ 613 (793)
T PLN00181 543 -------YIKSQVASSNFEGVVQVWDVA--RSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT 613 (793)
T ss_pred -------CCCCEEEEEeCCCeEEEEECC--CCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE
Confidence 568899999999999999976 456667889999999875 54 688999999999999999999999888
Q ss_pred eecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCe-EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 001039 919 LKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDT-CVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRA 995 (1179)
Q Consensus 919 ~~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~ 995 (1179)
+..+ ..+.++.|+ ++..+++|+.||.|++||+++++ .+..+.+|...|.++.|. ++..+++++.|+.|++||++.
T Consensus 614 ~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 614 IKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred EecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCC
Confidence 8755 678999996 58899999999999999998865 466778899999999997 678899999999999999975
Q ss_pred C------ceeEEeecCCCCeEEEEEc--CCEEEEEeCCCcEEEEEccCCeeeEEe-------------ecCCcCEEEEEE
Q 001039 996 G------RQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVL-------------ACHAGPVQCVEY 1054 (1179)
Q Consensus 996 ~------~~~~~~~~~~~~I~sl~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~-------------~~h~~~V~~l~~ 1054 (1179)
+ +.+..+.+|...+.+++++ +.++++|+.||.|++|+.........+ ..|...|.+++|
T Consensus 692 ~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~w 771 (793)
T PLN00181 692 SISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCW 771 (793)
T ss_pred CccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEE
Confidence 3 5678899999999988885 569999999999999998765443222 234567999999
Q ss_pred ecCCCEEEEEeCCCcEEEEEc
Q 001039 1055 SSSDRGIITGSSDGLLRFWEN 1075 (1179)
Q Consensus 1055 spdg~~l~sgs~Dg~I~iwd~ 1075 (1179)
++++..+++|+.||.|++|++
T Consensus 772 s~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 772 RGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999986
No 63
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.8e-27 Score=239.83 Aligned_cols=295 Identities=21% Similarity=0.301 Sum_probs=238.7
Q ss_pred EeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCC
Q 001039 878 TLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTD 954 (1179)
Q Consensus 878 ~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~ 954 (1179)
.++||..+++.+ +.+|.+|++++.|.+..+|-..+|+.+.++.||.+.|+|++.. +...+++|+.|.++++||+.+|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 468999999976 8899999999999999999999999999999999999999998 7889999999999999999999
Q ss_pred eEEEEeccCCCcEEEEEEcCCCCEEEEEeC-----CCeEEEEeCC-------CCceeEEeecCCCCeEEEEEc--CCEEE
Q 001039 955 TCVATVGRCSSAVLCMEYDDSTGILAAGGR-----DAVANIWDIR-------AGRQMHKFLGHTKWIRSIRMD--RDTVI 1020 (1179)
Q Consensus 955 ~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~-----dg~I~iwD~~-------~~~~~~~~~~~~~~I~sl~~~--~~~l~ 1020 (1179)
+++.+++ ...+|..+.|+++|++++.... .+.|.++|++ ..++..++..+.+.++..-|+ ++.|+
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 9999884 4678999999999998887754 4679999998 455678888888999999995 56999
Q ss_pred EEeCCCcEEEEEccCCe-eeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccC-ceEEEEe
Q 001039 1021 TGSDDWTARMWSISRGT-CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHS-SAILSIN 1098 (1179)
Q Consensus 1021 sgs~dg~I~iwd~~~~~-~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~-~~i~sis 1098 (1179)
+|.+||.|.+||+++|+ .+.....|...|+.+++++|..++++++.|.+-++||..+ +.+++++.... ....+++
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t---l~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT---LEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccc---eeeEEEeeecccccceecc
Confidence 99999999999999985 4555678999999999999999999999999999999999 67777664322 2234567
Q ss_pred cCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001039 1099 AGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1099 ~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
|....++.|+.-...-|=-...+ ...+...=-....-+.+...++|-++|++|+|+|||+..+|||+||.||+..++.
T Consensus 241 P~~d~VilgGGqeA~dVTTT~~r-~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 241 PLLDHVILGGGQEAMDVTTTSTR-AGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cccceEEecCCceeeeeeeeccc-ccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 87777777765444433222211 0000000000000133556789999999999999999999999999999987654
No 64
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.3e-27 Score=283.83 Aligned_cols=275 Identities=26% Similarity=0.503 Sum_probs=250.0
Q ss_pred ccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE-eecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEE
Q 001039 882 HTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEE-LKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVAT 959 (1179)
Q Consensus 882 h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~-~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~ 959 (1179)
+...+.+.-..++++++++.|++|++||..++..+.. +.+|.+.|+++++. .++.+++|+.|.++++||..+|++...
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~ 286 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS 286 (537)
T ss_pred CcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE
Confidence 3445555555588999999999999999999999988 99999999999998 488999999999999999999999999
Q ss_pred eccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeee
Q 001039 960 VGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCD 1039 (1179)
Q Consensus 960 ~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~ 1039 (1179)
+.+|.+.+.++...+ ..+++|+.|.+|++|++.++..+..+.+|..+|.++..+++++++|+.||+|++||+.+++++
T Consensus 287 l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl 364 (537)
T KOG0274|consen 287 LQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCL 364 (537)
T ss_pred ecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceee
Confidence 999999999988754 467788999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc-eEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeC
Q 001039 1040 AVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGI-KCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHR 1118 (1179)
Q Consensus 1040 ~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~ 1118 (1179)
+++.+|.+.|+++.+... ..+++|+.|++|++||+.+ . +|+..+.+|...+..+...++.|++++.||+|++||.
T Consensus 365 ~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~---~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~ 440 (537)
T KOG0274|consen 365 KSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRT---KRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDA 440 (537)
T ss_pred eeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCc---hhhhhhhhcCCcccccccccccceeEeccccccEEEeec
Confidence 999999999999988755 8999999999999999999 5 8999999999999999999999999999999999999
Q ss_pred CCCCcCcccCCCCccccceeeeecCC-CcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCC
Q 001039 1119 PQERLGGFSGTGSKMSGWQLYRTPQK-TVAVVRCIASDLERKRICSGGRNGLLRLWEATINI 1179 (1179)
Q Consensus 1119 ~~~~~~~~~~~g~~~~~~~~~~~~~~-h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg~ 1179 (1179)
.++ ++.+...+ |.+.|+++++. ...+++++.||++++||+.++.
T Consensus 441 ~~~---------------~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 441 EEG---------------ECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred ccC---------------ceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCc
Confidence 843 56666666 77899999987 5678899999999999999874
No 65
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.1e-27 Score=271.78 Aligned_cols=281 Identities=21% Similarity=0.404 Sum_probs=243.6
Q ss_pred EecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEe
Q 001039 823 IRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGS 900 (1179)
Q Consensus 823 l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs 900 (1179)
+..-+..|-+++|+ |...+++++-..|.|++||.+ -..++..+.+|.++|.. |+|.+..+++||
T Consensus 5 fEskSsRvKglsFH------------P~rPwILtslHsG~IQlWDYR--M~tli~rFdeHdGpVRgv~FH~~qplFVSGG 70 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFH------------PKRPWILTSLHSGVIQLWDYR--MGTLIDRFDEHDGPVRGVDFHPTQPLFVSGG 70 (1202)
T ss_pred hhcccccccceecC------------CCCCEEEEeecCceeeeehhh--hhhHHhhhhccCCccceeeecCCCCeEEecC
Confidence 34456778899998 788899999999999999966 45677889999999995 589999999999
Q ss_pred CCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEE
Q 001039 901 DDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGIL 979 (1179)
Q Consensus 901 ~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 979 (1179)
.|-.|++|+..+.+++.++.||-+.|..+.|+ .--+++++|.|.+|+||+..+++++..+.+|...|.|..|+|....+
T Consensus 71 DDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlI 150 (1202)
T KOG0292|consen 71 DDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLI 150 (1202)
T ss_pred CccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceE
Confidence 99999999999999999999999999999999 56799999999999999999999999999999999999999999999
Q ss_pred EEEeCCCeEEEEeCCCCc-----------------------------eeEEeecCCCCeEEEEEcCC--EEEEEeCCCcE
Q 001039 980 AAGGRDAVANIWDIRAGR-----------------------------QMHKFLGHTKWIRSIRMDRD--TVITGSDDWTA 1028 (1179)
Q Consensus 980 ~sgs~dg~I~iwD~~~~~-----------------------------~~~~~~~~~~~I~sl~~~~~--~l~sgs~dg~I 1028 (1179)
++++-|.+|++||+..-+ ..+.+.||...|+.++|+|. .+++|+.|+.|
T Consensus 151 VSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqV 230 (1202)
T KOG0292|consen 151 VSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQV 230 (1202)
T ss_pred EEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCccee
Confidence 999999999999985210 11345789999999999995 89999999999
Q ss_pred EEEEccCCee--eEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeeccc--CceEEEEecCCCEE
Q 001039 1029 RMWSISRGTC--DAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIH--SSAILSINAGDHWL 1104 (1179)
Q Consensus 1029 ~iwd~~~~~~--~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h--~~~i~sis~dg~~l 1104 (1179)
++|.++..+. +.+..+|.+.|.++.|+|....+++.|+|++|++||+.. ...+.+++.. .-++.+.+|..+++
T Consensus 231 KlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k---Rt~v~tfrrendRFW~laahP~lNLf 307 (1202)
T KOG0292|consen 231 KLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK---RTSVQTFRRENDRFWILAAHPELNLF 307 (1202)
T ss_pred eEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc---ccceeeeeccCCeEEEEEecCCccee
Confidence 9999876543 455779999999999999999999999999999999998 4555555433 44566668999998
Q ss_pred EEEECCCcEEEEeCCCC
Q 001039 1105 GIGAADNSMSLFHRPQE 1121 (1179)
Q Consensus 1105 asgs~Dg~I~iwd~~~~ 1121 (1179)
|+| .|+-+.||.++.+
T Consensus 308 AAg-HDsGm~VFkleRE 323 (1202)
T KOG0292|consen 308 AAG-HDSGMIVFKLERE 323 (1202)
T ss_pred eee-cCCceEEEEEccc
Confidence 876 5667888888744
No 66
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=3.3e-27 Score=250.24 Aligned_cols=279 Identities=20% Similarity=0.357 Sum_probs=240.2
Q ss_pred cccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CC---CEEEEEEcCCeEEEEeCCCCeE
Q 001039 881 GHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SG---ERVLTASHDGTVKMWDVRTDTC 956 (1179)
Q Consensus 881 ~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~---~~l~sgs~dg~I~iwd~~~~~~ 956 (1179)
.|...|.++.-.++++++|+.||.+++||.. |+....+.||.++|.+++|. .+ ..+++++.|.++++|..+.++.
T Consensus 103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~ 181 (423)
T KOG0313|consen 103 LHDDWVSSVKGASKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN 181 (423)
T ss_pred cchhhhhhhcccCceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh
Confidence 3777777776668999999999999999964 89999999999999999887 33 3599999999999999987754
Q ss_pred E----EEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-------------------------CCceeEEeecCCC
Q 001039 957 V----ATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR-------------------------AGRQMHKFLGHTK 1007 (1179)
Q Consensus 957 ~----~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~-------------------------~~~~~~~~~~~~~ 1007 (1179)
. ..-.+|...|.+++..++|..+++|+.|.+|.+|+.. ++.++..+.||..
T Consensus 182 ~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~ 261 (423)
T KOG0313|consen 182 KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE 261 (423)
T ss_pred hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccc
Confidence 3 3335899999999999999999999999999999932 1234567789999
Q ss_pred CeEEEEEc-CCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEe
Q 001039 1008 WIRSIRMD-RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKN 1086 (1179)
Q Consensus 1008 ~I~sl~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~ 1086 (1179)
+|.++.|+ ...+++++.|.+|+.||+.++....++. ....++++.++|..++|++|+.|..+++||.+++..-.....
T Consensus 262 ~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s 340 (423)
T KOG0313|consen 262 PVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQS 340 (423)
T ss_pred ceeeEEEcCCCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEe
Confidence 99999995 5689999999999999999999988887 467899999999999999999999999999999877777788
Q ss_pred ecccCceEEEE--ec-CCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEE
Q 001039 1087 VTIHSSAILSI--NA-GDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICS 1163 (1179)
Q Consensus 1087 ~~~h~~~i~si--s~-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Las 1163 (1179)
+.+|.+.|.++ +| +...|++|+.||++++||+... +..+..+.+|...|.++.|. ++..|+|
T Consensus 341 ~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~--------------k~plydI~~h~DKvl~vdW~-~~~~IvS 405 (423)
T KOG0313|consen 341 LIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST--------------KAPLYDIAGHNDKVLSVDWN-EGGLIVS 405 (423)
T ss_pred eecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC--------------CCcceeeccCCceEEEEecc-CCceEEe
Confidence 99999999777 45 5578999999999999999743 13566778999999999997 4668999
Q ss_pred EeCCCcEEEEECC
Q 001039 1164 GGRNGLLRLWEAT 1176 (1179)
Q Consensus 1164 gs~Dg~I~vWdv~ 1176 (1179)
||.|.+|+|+.-.
T Consensus 406 GGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 406 GGADNKLRIFKGS 418 (423)
T ss_pred ccCcceEEEeccc
Confidence 9999999998653
No 67
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=2.4e-28 Score=244.84 Aligned_cols=284 Identities=23% Similarity=0.384 Sum_probs=240.7
Q ss_pred CCCCcccccCCcceEEEEEcc---CCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEE
Q 001039 758 DQQPAEASGIGRSWVQSMFSR---EASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITA 832 (1179)
Q Consensus 758 ~~~~~~~~gh~~~i~~~~fSp---dg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~ 832 (1179)
.+.|+.|.||.++++.++||| ||-+|++++.| -.+-+-++|. -+.++.||+++|++
T Consensus 4 ~~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgd-------------------wigtfeghkgavw~ 64 (334)
T KOG0278|consen 4 RQTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGD-------------------WIGTFEGHKGAVWS 64 (334)
T ss_pred ccCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCC-------------------cEEeeeccCcceee
Confidence 356888999999999999986 89899999988 5566666666 67899999999999
Q ss_pred EEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE--EEecCCCEEEEEeCCCcEEEEEC
Q 001039 833 LHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDK 910 (1179)
Q Consensus 833 v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~l~sgs~dg~I~iwd~ 910 (1179)
.+.. .+...-|+++.|-+-++||.- ++..+..+. |..-|. +|+.|.++|++|+.+..++|+|+
T Consensus 65 ~~l~------------~na~~aasaaadftakvw~a~--tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdl 129 (334)
T KOG0278|consen 65 ATLN------------KNATRAASAAADFTAKVWDAV--TGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL 129 (334)
T ss_pred eecC------------chhhhhhhhcccchhhhhhhh--hhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhc
Confidence 9875 667778899999999999965 333334443 444444 67999999999999999999999
Q ss_pred CCCe-EEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 001039 911 QTSQ-LLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVA 988 (1179)
Q Consensus 911 ~t~~-~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I 988 (1179)
+..+ +...+.+|.+.|..+.|. .++.+++.+.|++|++||.++++.++++ ..+..|+++.++++|+++.++. .+.|
T Consensus 130 n~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL-~~~s~VtSlEvs~dG~ilTia~-gssV 207 (334)
T KOG0278|consen 130 NRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL-EFNSPVTSLEVSQDGRILTIAY-GSSV 207 (334)
T ss_pred cCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE-ecCCCCcceeeccCCCEEEEec-Ccee
Confidence 8754 456789999999999998 6778888899999999999999999998 4567899999999999887664 5789
Q ss_pred EEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEEe-ecCCcCEEEEEEecCCCEEEEEe
Q 001039 989 NIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVL-ACHAGPVQCVEYSSSDRGIITGS 1065 (1179)
Q Consensus 989 ~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~-~~h~~~V~~l~~spdg~~l~sgs 1065 (1179)
.+||..+-..++.+.. ...|.+.+.+| ..+++|++|..++.||..+|+.+..+ ++|.++|.|+.|+|||...++||
T Consensus 208 ~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGS 286 (334)
T KOG0278|consen 208 KFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGS 286 (334)
T ss_pred EEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccC
Confidence 9999999888887743 33466666655 48999999999999999999999886 89999999999999999999999
Q ss_pred CCCcEEEEEcCCC
Q 001039 1066 SDGLLRFWENDDA 1078 (1179)
Q Consensus 1066 ~Dg~I~iwd~~~~ 1078 (1179)
.||+|++|....+
T Consensus 287 EDGTirlWQt~~~ 299 (334)
T KOG0278|consen 287 EDGTIRLWQTTPG 299 (334)
T ss_pred CCceEEEEEecCC
Confidence 9999999987763
No 68
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=6.4e-27 Score=240.98 Aligned_cols=320 Identities=20% Similarity=0.336 Sum_probs=245.8
Q ss_pred cccc-cCCCCCCCCC--CCCCCcccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcc-c
Q 001039 743 SNGM-PSPLSKDATN--DDQQPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKK-I 816 (1179)
Q Consensus 743 ~~~~-fSP~g~~~~~--~~~~~~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~-~ 816 (1179)
++.+ |-|+-+.+.. ......-+..|.....+.+|||||.++|+|+.| |++.|++.--... .......+..+ .
T Consensus 84 giDle~dadaq~~s~e~~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks--~~~em~~~~~qa~ 161 (430)
T KOG0640|consen 84 GIDLEFDADAQGSSPEPSEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS--KPKEMISGDTQAR 161 (430)
T ss_pred ceeeeeccccccCCCCCcccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc--chhhhccCCcccC
Confidence 4444 5555442221 334445567788887778999999999999999 9999998322111 11111111111 2
Q ss_pred ccceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE--EEecCCC
Q 001039 817 QSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRG 894 (1179)
Q Consensus 817 ~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~ 894 (1179)
.+.++++-.|.+.|+++.|+ |....|++|+.|++|+++|+.....+.....-....+|. +++|.|.
T Consensus 162 hPvIRTlYDH~devn~l~FH------------Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe 229 (430)
T KOG0640|consen 162 HPVIRTLYDHVDEVNDLDFH------------PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE 229 (430)
T ss_pred CceEeehhhccCcccceeec------------chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc
Confidence 35789999999999999999 788999999999999999987433322222222344555 4579999
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEe---ecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEecc-C-CCcEE
Q 001039 895 KVVSGSDDQSVLVWDKQTSQLLEEL---KGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGR-C-SSAVL 968 (1179)
Q Consensus 895 ~l~sgs~dg~I~iwd~~t~~~~~~~---~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~-~~~v~ 968 (1179)
+++.|....++++||+++-++...- ..|.+.|+++.++ .+++.++|+.||.|++||--+++|+.++.. | ...|.
T Consensus 230 fllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevc 309 (430)
T KOG0640|consen 230 FLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVC 309 (430)
T ss_pred eEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceee
Confidence 9999999999999999998886543 4689999999999 688999999999999999999999998853 3 46799
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCC-----CeEEEEEc--CCEEEEEe-CCCcEEEEEccCCeeeE
Q 001039 969 CMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTK-----WIRSIRMD--RDTVITGS-DDWTARMWSISRGTCDA 1040 (1179)
Q Consensus 969 ~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~-----~I~sl~~~--~~~l~sgs-~dg~I~iwd~~~~~~~~ 1040 (1179)
+..|..+|+++++.+.|..+++|.+.+++++..+.|... --+...|+ .++++.-. ..+.+.-||.+++..+.
T Consensus 310 Sa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~ 389 (430)
T KOG0640|consen 310 SAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVA 389 (430)
T ss_pred eEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhh
Confidence 999999999999999999999999999999999876522 11223343 34555443 45789999999987666
Q ss_pred Eee-cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 001039 1041 VLA-CHAGPVQCVEYSSSDRGIITGSSDGLLRFWEND 1076 (1179)
Q Consensus 1041 ~~~-~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~ 1076 (1179)
.+. +|++.+..+.-||.+.-+++|+.|-.+++|--+
T Consensus 390 l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 390 LLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 554 799999999999999999999999999999654
No 69
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=3.1e-26 Score=232.26 Aligned_cols=283 Identities=21% Similarity=0.333 Sum_probs=233.7
Q ss_pred CCcccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeec
Q 001039 760 QPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVT 837 (1179)
Q Consensus 760 ~~~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~ 837 (1179)
+|+.+.||.++++++.|..+|.+|.+|+.| ..||-..+|+ .+.++.||+++|+|+...
T Consensus 2 rpi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe-------------------rlGty~GHtGavW~~Did- 61 (327)
T KOG0643|consen 2 RPILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE-------------------RLGTYDGHTGAVWCCDID- 61 (327)
T ss_pred CccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc-------------------eeeeecCCCceEEEEEec-
Confidence 467889999999999999999999999999 9999998888 788999999999999986
Q ss_pred ccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE--EEecCCCEEEEEeC-----CCcEEEEEC
Q 001039 838 KREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSD-----DQSVLVWDK 910 (1179)
Q Consensus 838 ~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~l~sgs~-----dg~I~iwd~ 910 (1179)
.+.+.++||+.|.++++||+. .++.+..++.. .+|. .|+.+|++++.+.. .+.|.++|+
T Consensus 62 -----------~~s~~liTGSAD~t~kLWDv~--tGk~la~~k~~-~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi 127 (327)
T KOG0643|consen 62 -----------WDSKHLITGSADQTAKLWDVE--TGKQLATWKTN-SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDI 127 (327)
T ss_pred -----------CCcceeeeccccceeEEEEcC--CCcEEEEeecC-CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEc
Confidence 788999999999999999987 44444555432 3333 57899999887754 478999998
Q ss_pred C-------CCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCe-EEEEeccCCCcEEEEEEcCCCCEEEE
Q 001039 911 Q-------TSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDT-CVATVGRCSSAVLCMEYDDSTGILAA 981 (1179)
Q Consensus 911 ~-------t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~s 981 (1179)
+ ..++...+..+...++.+.|. -++.|++|..||.|..||+++|+ .+.....|...|+.+.++++..++++
T Consensus 128 ~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT 207 (327)
T KOG0643|consen 128 RDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFIT 207 (327)
T ss_pred cCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEe
Confidence 7 456678888889999999999 58899999999999999999985 45555778999999999999999999
Q ss_pred EeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEEEeCCCc--EEEEEccCC------------eeeEEeecC
Q 001039 982 GGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWT--ARMWSISRG------------TCDAVLACH 1045 (1179)
Q Consensus 982 gs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~--I~iwd~~~~------------~~~~~~~~h 1045 (1179)
++.|.+-++||.++-+.++++. ...++++.++.| +.++.|+.... |.-=+.+.| +.+..+++|
T Consensus 208 ~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH 286 (327)
T KOG0643|consen 208 GSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH 286 (327)
T ss_pred cccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc
Confidence 9999999999999999998884 456788888876 35555543221 222222222 345667899
Q ss_pred CcCEEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1046 AGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1046 ~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
-++|++++|+|+|+..++|+.||.|++.-.+.
T Consensus 287 FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 287 FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 99999999999999999999999999986554
No 70
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.4e-26 Score=259.84 Aligned_cols=324 Identities=20% Similarity=0.379 Sum_probs=254.6
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCce----eEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCC--eEEEEee
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRGSE----LRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTS--QLLEELK 920 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~~~----~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~--~~~~~~~ 920 (1179)
|.+++|.|||.||.|++|++.....+ ....++.|...|..+ +.+++.+++++.|-+|++|+...+ -++.++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 78889999999999999998644332 456788999999964 678889999999999999999877 5778899
Q ss_pred cCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCeE--E--------EEec-cCCCcEEEEEEcCCCCEEEEEeCCCe
Q 001039 921 GHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTC--V--------ATVG-RCSSAVLCMEYDDSTGILAAGGRDAV 987 (1179)
Q Consensus 921 ~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~~--~--------~~~~-~~~~~v~~l~~sp~~~~l~sgs~dg~ 987 (1179)
.|.+.|.|+++. +...+++||-|+.|.+||++++.. + ..+. ++...|.+++.++.|..+++|+..+.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 999999999994 677899999999999999998732 2 2222 67788999999999999999999999
Q ss_pred EEEEeCCCCceeEEeecCCCCeEEEEE--cCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEe
Q 001039 988 ANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS 1065 (1179)
Q Consensus 988 I~iwD~~~~~~~~~~~~~~~~I~sl~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs 1065 (1179)
+++||.++++.+.+++||+..|.++.. +|..+++++.||+|++||+...+|+.++..|...|+++..+|+-..+.+|+
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~ 274 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGG 274 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecC
Confidence 999999999999999999999999998 566999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeee---
Q 001039 1066 SDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYR--- 1140 (1179)
Q Consensus 1066 ~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~--- 1140 (1179)
.||.|..=|+.+......+. ....+|..+ +...+-+.+++.|+.|+-|...... .+...|.....+....
T Consensus 275 rd~~i~~Tdl~n~~~~tlic---k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~--~l~~s~~~~~~~T~~~~~~ 349 (735)
T KOG0308|consen 275 RDGNIYRTDLRNPAKSTLIC---KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI--ALSVSGDLDFFSTDSNNHS 349 (735)
T ss_pred CCCcEEecccCCchhheEee---cCCCchhhhhhccccCCceeeeccccceecCCcccc--ccccCCCCCcccccCCCcc
Confidence 99999999999843222222 233444444 2223444778899999999765321 1111111100111000
Q ss_pred --e---c---CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001039 1141 --T---P---QKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1141 --~---~---~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
. + ..-..+|..-+.-.|.+.++|-..+|.+.+||+-.
T Consensus 350 ~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~ 394 (735)
T KOG0308|consen 350 CDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILA 394 (735)
T ss_pred ccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeee
Confidence 0 0 01112344455566888999999999999999854
No 71
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=3.7e-27 Score=243.33 Aligned_cols=268 Identities=21% Similarity=0.395 Sum_probs=235.1
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeEEEEe--------ecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEE
Q 001039 888 AINSDRGKVVSGSDDQSVLVWDKQTSQLLEEL--------KGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVA 958 (1179)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~--------~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~ 958 (1179)
.|+|||+++++|+.||-|.+||..+|+..+.+ --++.+|.|+.|+ +..++++|+.||.|++|.+++|.|++
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR 299 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR 299 (508)
T ss_pred eeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH
Confidence 48999999999999999999999999765543 3477899999999 88899999999999999999999999
Q ss_pred Eec-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE--cCCEEEEEeCCCcEEEEEccC
Q 001039 959 TVG-RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISR 1035 (1179)
Q Consensus 959 ~~~-~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~--~~~~l~sgs~dg~I~iwd~~~ 1035 (1179)
.+. .|...|+|+.|+.|+..+++++.|.++++.-+++|++++.++||.+.|+...| +|..+++++.||+|++|+.++
T Consensus 300 rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 300 RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKT 379 (508)
T ss_pred HhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcc
Confidence 986 79999999999999999999999999999999999999999999999999988 567999999999999999999
Q ss_pred CeeeEEee--cCCcCEEEEEEecC-CCEEEEEeCCCcEEEEEcCCCCcceEEEeeccc----CceEE-EEecCCCEEEEE
Q 001039 1036 GTCDAVLA--CHAGPVQCVEYSSS-DRGIITGSSDGLLRFWENDDAGGIKCVKNVTIH----SSAIL-SINAGDHWLGIG 1107 (1179)
Q Consensus 1036 ~~~~~~~~--~h~~~V~~l~~spd-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h----~~~i~-sis~dg~~lasg 1107 (1179)
++|+.+++ +.+.+|+++..-|. -..++++...++|+|-++.. +.++.+... ...|. .++|.|.++.+.
T Consensus 380 teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----QvVrsfsSGkREgGdFi~~~lSpkGewiYci 455 (508)
T KOG0275|consen 380 TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----QVVRSFSSGKREGGDFINAILSPKGEWIYCI 455 (508)
T ss_pred hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----eEEeeeccCCccCCceEEEEecCCCcEEEEE
Confidence 99999887 35567888887774 45688888899999999875 555554322 22343 449999999999
Q ss_pred ECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001039 1108 AADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1174 (1179)
Q Consensus 1108 s~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWd 1174 (1179)
+.|+.++-|.+.+ | .+-+++.-|...|-.++-+|..+.||+-++||.+++|.
T Consensus 456 gED~vlYCF~~~s---------G------~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 456 GEDGVLYCFSVLS---------G------KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ccCcEEEEEEeec---------C------ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999874 3 56667778888899999999999999999999999996
No 72
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=1.2e-24 Score=250.86 Aligned_cols=385 Identities=15% Similarity=0.200 Sum_probs=282.6
Q ss_pred ccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeeccccee
Q 001039 765 SGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVW 842 (1179)
Q Consensus 765 ~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~ 842 (1179)
.+|...|... -+=|.++.++..+ +.+|+..+++... ...+..+..-.+.|+++. ||
T Consensus 111 ~~~~a~v~~l--~~fGe~lia~d~~~~l~vw~~s~~~~e~--------------~l~~~~~~~~~~~Ital~-HP----- 168 (910)
T KOG1539|consen 111 LLHGAKVHLL--LPFGEHLIAVDISNILFVWKTSSIQEEL--------------YLQSTFLKVEGDFITALL-HP----- 168 (910)
T ss_pred ccccceEEEE--eeecceEEEEEccCcEEEEEeccccccc--------------cccceeeeccCCceeeEe-cc-----
Confidence 4444343333 2335666666555 9999988752110 001222333333388885 32
Q ss_pred ccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeEEEEee
Q 001039 843 DLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEELK 920 (1179)
Q Consensus 843 ~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~ 920 (1179)
+--=+.++.|+.+|.+.+|+++ ..+.+.+++++...|+++ +|-=..++.|..+|+|.++|++.++.+.+++
T Consensus 169 -----~TYLNKIvvGs~~G~lql~Nvr--t~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk 241 (910)
T KOG1539|consen 169 -----STYLNKIVVGSSQGRLQLWNVR--TGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK 241 (910)
T ss_pred -----hhheeeEEEeecCCcEEEEEec--cCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE
Confidence 1234668899999999999987 677889999999999998 6777889999999999999999999999999
Q ss_pred cCCCcEEEEEEe-CCC-EEEEEEcCCeEEEEeCCCCeEEEEec-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-
Q 001039 921 GHDAQVSCVRML-SGE-RVLTASHDGTVKMWDVRTDTCVATVG-RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG- 996 (1179)
Q Consensus 921 ~h~~~V~~l~~s-~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~- 996 (1179)
...+.|+.++|. ||. .+++|+..|.+.+||++..+.+..+. .|.+.+....|.+....+++++.|+.+++|=..++
T Consensus 242 ~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~d 321 (910)
T KOG1539|consen 242 QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGD 321 (910)
T ss_pred ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCC
Confidence 667999999999 555 56777788999999999988877765 67789999999999999999999998888755433
Q ss_pred ---ceeEEeecCCCCeEEEEEc---CCEEEEEeCCCcEEEEEc-------------------------------------
Q 001039 997 ---RQMHKFLGHTKWIRSIRMD---RDTVITGSDDWTARMWSI------------------------------------- 1033 (1179)
Q Consensus 997 ---~~~~~~~~~~~~I~sl~~~---~~~l~sgs~dg~I~iwd~------------------------------------- 1033 (1179)
+.++.-.||..+..++.+. +..+.+++.|++.+.+++
T Consensus 322 g~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~f 401 (910)
T KOG1539|consen 322 GVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEF 401 (910)
T ss_pred CcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceee
Confidence 3344445777777777773 336666666766665543
Q ss_pred ----------------------------cCCee-eEEee-----cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 001039 1034 ----------------------------SRGTC-DAVLA-----CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAG 1079 (1179)
Q Consensus 1034 ----------------------------~~~~~-~~~~~-----~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~ 1079 (1179)
++... ...+. .....+++++.++.|++.+.|+..|.|.+|++.++-
T Consensus 402 a~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi 481 (910)
T KOG1539|consen 402 AFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI 481 (910)
T ss_pred ecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCe
Confidence 22211 11111 123568999999999999999999999999999954
Q ss_pred cceEEEeecccCceEEEEecCC--CEEEEEECCCcEEEEeCCCCCcCcccCCCCccc-----------------------
Q 001039 1080 GIKCVKNVTIHSSAILSINAGD--HWLGIGAADNSMSLFHRPQERLGGFSGTGSKMS----------------------- 1134 (1179)
Q Consensus 1080 ~~~~~~~~~~h~~~i~sis~dg--~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~----------------------- 1134 (1179)
.......-..|..+|.+++-|+ +.+++++.+|.+..||..++.+..-..-|....
T Consensus 482 ~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vv 561 (910)
T KOG1539|consen 482 HRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVV 561 (910)
T ss_pred eecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEE
Confidence 3333333368999999987664 669999999999999998765321111111100
Q ss_pred ---cceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1135 ---GWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1135 ---~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
+.+..+.+.+|.+.|++++|||||++|++++.|++||+||+.||
T Consensus 562 D~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 562 DVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred EchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc
Confidence 11345567899999999999999999999999999999999987
No 73
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=7.8e-27 Score=240.92 Aligned_cols=275 Identities=19% Similarity=0.352 Sum_probs=236.0
Q ss_pred cccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEE--------EeccccccEEEE--ecCCC
Q 001039 825 GHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRA--------TLKGHTRTVRAI--NSDRG 894 (1179)
Q Consensus 825 gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~--------~l~~h~~~v~~~--s~d~~ 894 (1179)
|.++.+-|..|| |||++|++|+.||-|-+||.- ++++.+ .+.-+..+|.|+ +.|..
T Consensus 211 g~KSh~EcA~FS------------PDgqyLvsgSvDGFiEVWny~--~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE 276 (508)
T KOG0275|consen 211 GQKSHVECARFS------------PDGQYLVSGSVDGFIEVWNYT--TGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE 276 (508)
T ss_pred ccccchhheeeC------------CCCceEeeccccceeeeehhc--cchhhhhhhhhhhcceeecccceEEEeecccHH
Confidence 445556666666 999999999999999999965 333322 233466777765 78899
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEee-cCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEE
Q 001039 895 KVVSGSDDQSVLVWDKQTSQLLEELK-GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEY 972 (1179)
Q Consensus 895 ~l~sgs~dg~I~iwd~~t~~~~~~~~-~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~ 972 (1179)
.+++|+.||.|++|.+.+|.+++.+. .|...|+|+.|+ ++..+++++.|.++++--+.+|++++.+.+|.+.|+...|
T Consensus 277 MlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f 356 (508)
T KOG0275|consen 277 MLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF 356 (508)
T ss_pred HhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEE
Confidence 99999999999999999999999997 899999999999 8899999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEeec--CCCCeEEEEE---cCCEEEEEeCCCcEEEEEccCCeeeEEeec---
Q 001039 973 DDSTGILAAGGRDAVANIWDIRAGRQMHKFLG--HTKWIRSIRM---DRDTVITGSDDWTARMWSISRGTCDAVLAC--- 1044 (1179)
Q Consensus 973 sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~--~~~~I~sl~~---~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--- 1044 (1179)
+++|..+++++.||+|++|+.++.+++.+++. ...+|.++.. ++..++++...++|++.++. |+.++++..
T Consensus 357 t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkR 435 (508)
T KOG0275|consen 357 TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKR 435 (508)
T ss_pred cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCc
Confidence 99999999999999999999999999988864 4457777766 66799999999999999975 677777653
Q ss_pred CCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEe
Q 001039 1045 HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFH 1117 (1179)
Q Consensus 1045 h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd 1117 (1179)
..+...+.+.||.|.++.+.+.|+.++.+...++ ..-..+..|...+..+ +|..+.+|+-+.||.+++|.
T Consensus 436 EgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG---~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 436 EGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG---KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCceEEEEecCCCcEEEEEccCcEEEEEEeecC---ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 2456778889999999999999999999999884 4455666788888777 68999999999999999995
No 74
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1.6e-25 Score=253.51 Aligned_cols=278 Identities=24% Similarity=0.434 Sum_probs=237.8
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE-E--e-cCCC
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA-I--N-SDRG 894 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~-~--s-~d~~ 894 (1179)
..+.+.||+..|..+++. ++..++++|.||++++|+-..........+.+|.+.+.. + . .++.
T Consensus 6 ls~~l~gH~~DVr~v~~~-------------~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~ 72 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVT-------------DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKG 72 (745)
T ss_pred eEEEeccCccchheeEec-------------CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCc
Confidence 457899999999999874 577899999999999999653344444567778777663 3 2 4667
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcC
Q 001039 895 KVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDD 974 (1179)
Q Consensus 895 ~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp 974 (1179)
.+++|+.|++|.+|...+..++.++++|...|.++.......+++||+|.++++|- .+++...+.+|...|++++.-|
T Consensus 73 ~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~ 150 (745)
T KOG0301|consen 73 RLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLP 150 (745)
T ss_pred ceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEec--chhhhcccCCcchheeeeeecC
Confidence 79999999999999999999999999999999999977555699999999999995 4677777999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE-cCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEE
Q 001039 975 STGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM-DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVE 1053 (1179)
Q Consensus 975 ~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 1053 (1179)
++ .+++|+.|.+|++|.- ++.++++.+|...|+.+++ +...+++++.||.|+.|++ +|+++.++.+|.+-|+++.
T Consensus 151 e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis 226 (745)
T KOG0301|consen 151 EN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSIS 226 (745)
T ss_pred CC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEE
Confidence 88 7889999999999974 7889999999999999998 5559999999999999998 8999999999999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEe-cCCCEEEEEECCCcEEEEeCCC
Q 001039 1054 YSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSIN-AGDHWLGIGAADNSMSLFHRPQ 1120 (1179)
Q Consensus 1054 ~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis-~dg~~lasgs~Dg~I~iwd~~~ 1120 (1179)
...++..++++++|++++||+.. .+.+.+......+++.. -...-|++|++||.||||....
T Consensus 227 ~~~~~~~Ivs~gEDrtlriW~~~-----e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 227 MALSDGLIVSTGEDRTLRIWKKD-----ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred ecCCCCeEEEecCCceEEEeecC-----ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 88899999999999999999876 45555555566777763 3344567899999999998763
No 75
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=3.2e-25 Score=224.47 Aligned_cols=280 Identities=20% Similarity=0.350 Sum_probs=234.5
Q ss_pred EEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEE--EeecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEe
Q 001039 877 ATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLE--ELKGHDAQVSCVRML--SGERVLTASHDGTVKMWD 950 (1179)
Q Consensus 877 ~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~--~~~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd 950 (1179)
..+++|...+.+ ++.+|..+++|+.|+++.+|+++..+... ...+|.+.|-.++|. ..+.+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 456778888875 57899999999999999999998775544 457899999999998 578899999999999999
Q ss_pred CCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE--cCCEEEEEeCCCcE
Q 001039 951 VRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTA 1028 (1179)
Q Consensus 951 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~--~~~~l~sgs~dg~I 1028 (1179)
++++++...+....+. .-+.|+|+|+++++++.|..|...|.++.+.+...+ ....+.-++| ++++++.....|+|
T Consensus 94 ~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 94 IRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred eccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceE
Confidence 9999999888554444 557899999999999999999999999988776653 2334556666 45677777778999
Q ss_pred EEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEE--EEecCCCEEEE
Q 001039 1029 RMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAIL--SINAGDHWLGI 1106 (1179)
Q Consensus 1029 ~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~--sis~dg~~las 1106 (1179)
.|.....-+++..+++|.....|+.|+|+|+++|+|+.|..+.+||++. +.|.+.+..+.-+|. +++.||++||+
T Consensus 172 ~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E---LiC~R~isRldwpVRTlSFS~dg~~lAS 248 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE---LICERCISRLDWPVRTLSFSHDGRMLAS 248 (313)
T ss_pred EEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH---hhhheeeccccCceEEEEeccCcceeec
Confidence 9999999999999999999999999999999999999999999999998 788888888887775 45789999999
Q ss_pred EECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCC---------CcEEEEECCC
Q 001039 1107 GAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRN---------GLLRLWEATI 1177 (1179)
Q Consensus 1107 gs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~D---------g~I~vWdv~t 1177 (1179)
|++|..|-|=+++ +|.++ |+ ..+.++...|+|+|...+||-+++| |+++++-+.+
T Consensus 249 aSEDh~IDIA~ve---------tGd~~--~e-----I~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 249 ASEDHFIDIAEVE---------TGDRV--WE-----IPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred cCccceEEeEecc---------cCCeE--EE-----eeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence 9999999998887 55432 11 2467788999999999999988654 6788887654
No 76
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2e-26 Score=242.56 Aligned_cols=281 Identities=19% Similarity=0.342 Sum_probs=235.8
Q ss_pred eeEEEeccccccEEEEe--cCC-CEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEe
Q 001039 874 ELRATLKGHTRTVRAIN--SDR-GKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWD 950 (1179)
Q Consensus 874 ~~~~~l~~h~~~v~~~s--~d~-~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd 950 (1179)
..+..+.||...|.++. |.. ..+++|+.||.|++||+.+..+..+++.|.+.|..+++.. ..+++++.|.+|+.|-
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWK 135 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecCCcceeeee
Confidence 34567789999999984 444 5689999999999999999999999999999999999987 6788999999999999
Q ss_pred CCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC---EEEEEeCCCc
Q 001039 951 VRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD---TVITGSDDWT 1027 (1179)
Q Consensus 951 ~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~---~l~sgs~dg~ 1027 (1179)
++. ....++ ..++.+..+.-+..+..++++|. .|.|||.....++..+.-....|.++.+++. .|++|++|+.
T Consensus 136 ~~~-~p~~ti-lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 136 IDG-PPLHTI-LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred ccC-Ccceee-eccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 765 466666 33566777887778888888875 4999999999999999888889999999764 8899999999
Q ss_pred EEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEE
Q 001039 1028 ARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLG 1105 (1179)
Q Consensus 1028 I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~la 1105 (1179)
|.+||++.+.+++.+. ....-+.++|+|.+--+++|++|..++.+|++.-. ..+....+|.+.|+++ +|.|+-++
T Consensus 212 IvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG~Efv 288 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTGQEFV 288 (433)
T ss_pred eEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCCcchhc
Confidence 9999999999887765 34566789999988889999999999999998743 5666778899999887 89999999
Q ss_pred EEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1106 IGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1106 sgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
+||.|.+|+||.+..+ ... +... ......|.||.||.|.++++|||+|+.|++|...
T Consensus 289 sgsyDksIRIf~~~~~---------~SR---diYh--tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 289 SGSYDKSIRIFPVNHG---------HSR---DIYH--TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred cccccceEEEeecCCC---------cch---hhhh--HhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 9999999999998733 211 1111 1223569999999999999999999999999864
No 77
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.2e-26 Score=244.37 Aligned_cols=283 Identities=19% Similarity=0.304 Sum_probs=233.8
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEE
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVS 898 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~s 898 (1179)
-+..|.||.+.|.|++=+| ..-..++||+.||.|++||+. ..++..+++.|.+.|..++-+...+++
T Consensus 58 Fv~~L~gHrdGV~~lakhp-----------~~ls~~aSGs~DG~VkiWnls--qR~~~~~f~AH~G~V~Gi~v~~~~~~t 124 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHP-----------NKLSTVASGSCDGEVKIWNLS--QRECIRTFKAHEGLVRGICVTQTSFFT 124 (433)
T ss_pred chhhccccccccchhhcCc-----------chhhhhhccccCceEEEEehh--hhhhhheeecccCceeeEEecccceEE
Confidence 5667899999999999874 223679999999999999976 677788999999999999888899999
Q ss_pred EeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCC-C
Q 001039 899 GSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS-T 976 (1179)
Q Consensus 899 gs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~-~ 976 (1179)
++.|.+|+.|.++. .++.++.+ ...+..+..+ .++.++|||. .|.|||.....++..+.-....|.++.|+|. .
T Consensus 125 vgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET 200 (433)
T KOG0268|consen 125 VGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVET 200 (433)
T ss_pred ecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcc
Confidence 99999999999874 46666654 3456677666 5677888875 4899999999999999877889999999995 4
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC--EEEEEeCCCcEEEEEccCC-eeeEEeecCCcCEEEEE
Q 001039 977 GILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRG-TCDAVLACHAGPVQCVE 1053 (1179)
Q Consensus 977 ~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~ 1053 (1179)
..|+++++|+.|.+||++++.+++++. -...-+.++|+|+ .+++|++|..++.+|++.- .++....+|.+.|.++.
T Consensus 201 sILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVd 279 (433)
T KOG0268|consen 201 SILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVD 279 (433)
T ss_pred hheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEec
Confidence 567777799999999999999988763 3344567899886 7899999999999999874 56778889999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCC
Q 001039 1054 YSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1054 ~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
|||.|+-+++||.|.+|+||..+.+.......+-.........+|.|.+++++||+|++|++|...
T Consensus 280 fsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 280 FSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred cCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 999999999999999999999988554444333332223334458999999999999999999875
No 78
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=7.3e-25 Score=221.86 Aligned_cols=274 Identities=16% Similarity=0.264 Sum_probs=237.5
Q ss_pred cccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeeccc
Q 001039 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1179)
Q Consensus 762 ~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~ 839 (1179)
..+.+|...+-.++|+-||..+|+|+.| +++|+++..... .--..+||.+.|-.++|+|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-----------------~~~~~~gh~~svdql~w~~-- 74 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-----------------KELVYRGHTDSVDQLCWDP-- 74 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-----------------hhhcccCCCcchhhheeCC--
Confidence 4567888899999999999999999999 999999976421 1224678999999999986
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE-EEecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 001039 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR-AINSDRGKVVSGSDDQSVLVWDKQTSQLLEE 918 (1179)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~-~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~ 918 (1179)
+....+++++.|.+|++||+. ..++........+.+. +++|+|+++++++.|..|...|.++.+....
T Consensus 75 ---------~~~d~~atas~dk~ir~wd~r--~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~ 143 (313)
T KOG1407|consen 75 ---------KHPDLFATASGDKTIRIWDIR--SGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE 143 (313)
T ss_pred ---------CCCcceEEecCCceEEEEEec--cCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeeh
Confidence 678899999999999999987 3444444444444444 7899999999999999999999998877766
Q ss_pred eecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 001039 919 LKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR 997 (1179)
Q Consensus 919 ~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~ 997 (1179)
.+ ....+.-+.|+ +++.++.....|+|.|.....-+++.+++.|.....|+.|+|+|+++|+|+.|..+.+||+..--
T Consensus 144 ~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi 222 (313)
T KOG1407|consen 144 EQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI 222 (313)
T ss_pred hc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh
Confidence 54 34456677777 78888888888999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeecCCCCeEEEEE--cCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCC
Q 001039 998 QMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSD 1067 (1179)
Q Consensus 998 ~~~~~~~~~~~I~sl~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~D 1067 (1179)
+++.+.-+.-+|..++| ++.+|++|++|..|-|=++.+|..+..++ +.++...++|+|...+||-++.|
T Consensus 223 C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 223 CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred hheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 99999999999999999 67799999999999999999999999988 78999999999999999987765
No 79
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.1e-25 Score=224.90 Aligned_cols=238 Identities=22% Similarity=0.405 Sum_probs=207.2
Q ss_pred ccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEe---cCCCEEEEEeCC
Q 001039 826 HAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAIN---SDRGKVVSGSDD 902 (1179)
Q Consensus 826 H~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s---~d~~~l~sgs~d 902 (1179)
-++.+..++|++ ...+.+++++.||++++||.. ....++..++.|...|.++. .++..+++++.|
T Consensus 59 ~~D~LfdV~Wse-----------~~e~~~~~a~GDGSLrl~d~~-~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD 126 (311)
T KOG0277|consen 59 TEDGLFDVAWSE-----------NHENQVIAASGDGSLRLFDLT-MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWD 126 (311)
T ss_pred cccceeEeeecC-----------CCcceEEEEecCceEEEeccC-CCCcchhHHHhhhhheEEeccccccceeEEeeccC
Confidence 356789999985 456788899999999999965 44557788999999999884 346678889999
Q ss_pred CcEEEEECCCCeEEEEeecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcC-CCCEE
Q 001039 903 QSVLVWDKQTSQLLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDD-STGIL 979 (1179)
Q Consensus 903 g~I~iwd~~t~~~~~~~~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l 979 (1179)
|+|++|+...++.+.++.+|...|....|+ ..+.+++++.||++++||++.......+..|...+.|+.|+. +.+.+
T Consensus 127 ~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl 206 (311)
T KOG0277|consen 127 GTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVL 206 (311)
T ss_pred CceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEE
Confidence 999999999999999999999999999999 588999999999999999987544444888999999999998 67789
Q ss_pred EEEeCCCeEEEEeCCCC-ceeEEeecCCCCeEEEEEcCC---EEEEEeCCCcEEEEEccCC-eeeEEeecCCcCEEEEEE
Q 001039 980 AAGGRDAVANIWDIRAG-RQMHKFLGHTKWIRSIRMDRD---TVITGSDDWTARMWSISRG-TCDAVLACHAGPVQCVEY 1054 (1179)
Q Consensus 980 ~sgs~dg~I~iwD~~~~-~~~~~~~~~~~~I~sl~~~~~---~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~ 1054 (1179)
++|+.|+.|+.||+++- .++..+.+|.-.|+.+.++|. .|++++.|-++++||...+ ..+.+...|..-+..+.|
T Consensus 207 ~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dw 286 (311)
T KOG0277|consen 207 ATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDW 286 (311)
T ss_pred EecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccc
Confidence 99999999999999975 457888999999999999875 8999999999999998854 455667778999999999
Q ss_pred ec-CCCEEEEEeCCCcEEEEEc
Q 001039 1055 SS-SDRGIITGSSDGLLRFWEN 1075 (1179)
Q Consensus 1055 sp-dg~~l~sgs~Dg~I~iwd~ 1075 (1179)
|+ ++.++|+++.|+.++||+.
T Consensus 287 s~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 287 SLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccCceeeecccccceeeecc
Confidence 88 5778999999999999984
No 80
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=2.5e-23 Score=227.33 Aligned_cols=367 Identities=14% Similarity=0.288 Sum_probs=273.6
Q ss_pred CCCCCcccccCCcceEEEEEccCCCceeeccC-----c-----eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecc
Q 001039 757 DDQQPAEASGIGRSWVQSMFSREASSRSHSFS-----R-----VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGH 826 (1179)
Q Consensus 757 ~~~~~~~~~gh~~~i~~~~fSpdg~~las~~~-----d-----I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH 826 (1179)
+...+....||+..|.+++.+||--.+|+|.. . ||+||..+-+ .++++...
T Consensus 93 ee~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~-------------------TL~V~g~f 153 (626)
T KOG2106|consen 93 EERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLS-------------------TLHVIGFF 153 (626)
T ss_pred hhhhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccce-------------------eeeeeccc
Confidence 34455668999999999999999888886532 1 9999987666 67888888
Q ss_pred cCceEEEEeecccceeccccccCCCCEEEEE--eCCCcEEEEcCCCCCceeEEEeccccccEE--EEecCCCEEEEEeCC
Q 001039 827 AGAITALHCVTKREVWDLVGDREDAGFFISG--STDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDD 902 (1179)
Q Consensus 827 ~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasg--s~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~l~sgs~d 902 (1179)
...|+|++|++. ..|.++..- +.+..+.+||... .......+.....|. .|+|.+..++.....
T Consensus 154 ~~GV~~vaFsk~----------~~G~~l~~vD~s~~h~lSVWdWqk--~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk 221 (626)
T KOG2106|consen 154 DRGVTCVAFSKI----------NGGSLLCAVDDSNPHMLSVWDWQK--KAKLGPVKTSNEVVFLATFHPTDPNLIITCGK 221 (626)
T ss_pred cccceeeeeccc----------CCCceEEEecCCCccccchhhchh--hhccCcceeccceEEEEEeccCCCcEEEEeCC
Confidence 899999999952 345555544 3356789999862 222233333344444 478877666666667
Q ss_pred CcEEEEECCCCeEEEE---eecC-CCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCE
Q 001039 903 QSVLVWDKQTSQLLEE---LKGH-DAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI 978 (1179)
Q Consensus 903 g~I~iwd~~t~~~~~~---~~~h-~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 978 (1179)
|.+..|+.+.+...++ ++.+ ...|.|++|..+.-+++|..+|.|.||+..+.+..+....|++.|.+++.-.+|.+
T Consensus 222 ~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl 301 (626)
T KOG2106|consen 222 GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL 301 (626)
T ss_pred ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE
Confidence 8999999998866543 3333 36799999998888999999999999999888887777799999999999999986
Q ss_pred EEEEeCCCeEEEEeCCCCce------------eE-----------------------------EeecCCCCeEEEEEcC-
Q 001039 979 LAAGGRDAVANIWDIRAGRQ------------MH-----------------------------KFLGHTKWIRSIRMDR- 1016 (1179)
Q Consensus 979 l~sgs~dg~I~iwD~~~~~~------------~~-----------------------------~~~~~~~~I~sl~~~~- 1016 (1179)
+- |+.|..|..||-. -+. ++ ...+|....+.++..+
T Consensus 302 lS-GgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps 379 (626)
T KOG2106|consen 302 LS-GGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPS 379 (626)
T ss_pred ee-cCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCC
Confidence 55 9999999999932 111 00 1124555566666643
Q ss_pred -CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEE
Q 001039 1017 -DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAIL 1095 (1179)
Q Consensus 1017 -~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~ 1095 (1179)
+.+++++.|+.+++|+ ..+...+.. -..++.|+.|+|.| .++.|+..|...+.|.++ ...-.++.- ...-.+.
T Consensus 380 ~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~-~~lv~~~~d-~~~ls~v 453 (626)
T KOG2106|consen 380 KNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTET-QDLVTIHTD-NEQLSVV 453 (626)
T ss_pred hhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEeccc-ceeEEEEec-CCceEEE
Confidence 4899999999999999 444444433 46788999999999 999999999999999988 222223222 3444556
Q ss_pred EEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001039 1096 SINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEA 1175 (1179)
Q Consensus 1096 sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv 1175 (1179)
.++|+|.+||+|+.|+.|++|.+.. +|. ...+.-..|..+|+.+.||+|+++|.+-+.|-.|-.|..
T Consensus 454 ~ysp~G~~lAvgs~d~~iyiy~Vs~--------~g~-----~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 454 RYSPDGAFLAVGSHDNHIYIYRVSA--------NGR-----KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred EEcCCCCEEEEecCCCeEEEEEECC--------CCc-----EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 6699999999999999999999873 232 222223344489999999999999999999999999943
No 81
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.6e-25 Score=240.31 Aligned_cols=278 Identities=23% Similarity=0.369 Sum_probs=234.9
Q ss_pred cccCCcceEEEEEccCCC-ceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccce
Q 001039 764 ASGIGRSWVQSMFSREAS-SRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREV 841 (1179)
Q Consensus 764 ~~gh~~~i~~~~fSpdg~-~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~ 841 (1179)
....+..|..++|||... .+|++++. +.+++..+.. ..+.+.-.+..|++++|.
T Consensus 22 ~~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~-------------------~~k~~srFk~~v~s~~fR----- 77 (487)
T KOG0310|consen 22 VHKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRS-------------------VRKTFSRFKDVVYSVDFR----- 77 (487)
T ss_pred cccccCcceeEecCCCCCCceEEecccEEEEEecchhh-------------------hhhhHHhhccceeEEEee-----
Confidence 445568899999999554 35555555 9999988776 556677788899999997
Q ss_pred eccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--Eec-CCCEEEEEeCCCcEEEEECCCCeEEEE
Q 001039 842 WDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INS-DRGKVVSGSDDQSVLVWDKQTSQLLEE 918 (1179)
Q Consensus 842 ~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~-d~~~l~sgs~dg~I~iwd~~t~~~~~~ 918 (1179)
.||++||+|+..|.|+|+|.. ....+..+.+|+.++.. |++ ++..+++|+.|+.+++||+.+......
T Consensus 78 -------~DG~LlaaGD~sG~V~vfD~k--~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~ 148 (487)
T KOG0310|consen 78 -------SDGRLLAAGDESGHVKVFDMK--SRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAE 148 (487)
T ss_pred -------cCCeEEEccCCcCcEEEeccc--cHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEE
Confidence 899999999999999999944 55667788999999885 565 456678889999999999999988778
Q ss_pred eecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCC-eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 001039 919 LKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTD-TCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRA 995 (1179)
Q Consensus 919 ~~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~ 995 (1179)
+.+|++.|.|.+|+ ++..+++||.||+|++||+++. ..+..+ .|..+|..+.+-|.|..+++++. ..+++||+-+
T Consensus 149 l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~ 226 (487)
T KOG0310|consen 149 LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTT 226 (487)
T ss_pred ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecC
Confidence 99999999999999 4668999999999999999987 555555 78899999999999999999875 5899999996
Q ss_pred Cce-eEEeecCCCCeEEEEEc--CCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEE
Q 001039 996 GRQ-MHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRF 1072 (1179)
Q Consensus 996 ~~~-~~~~~~~~~~I~sl~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~i 1072 (1179)
|.. +.....|...|+|+.+. +..|++|+-||.|++||+.+-+.+..+. ..++|.+++.+|+++.++.|..||.+.+
T Consensus 227 G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 227 GGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred CceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeee
Confidence 655 44455599999999995 4799999999999999998888888887 6899999999999999999999998877
Q ss_pred EEcCC
Q 001039 1073 WENDD 1077 (1179)
Q Consensus 1073 wd~~~ 1077 (1179)
-+...
T Consensus 306 rr~~~ 310 (487)
T KOG0310|consen 306 RRREV 310 (487)
T ss_pred ehhhc
Confidence 64433
No 82
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.1e-25 Score=251.52 Aligned_cols=269 Identities=23% Similarity=0.398 Sum_probs=235.8
Q ss_pred EEccCCCceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCE
Q 001039 775 MFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGF 853 (1179)
Q Consensus 775 ~fSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~ 853 (1179)
.|| ..+.+|.|... |.+|+..++. .......+...|+++.|+ ++|++
T Consensus 184 dWs-s~n~laValg~~vylW~~~s~~-------------------v~~l~~~~~~~vtSv~ws------------~~G~~ 231 (484)
T KOG0305|consen 184 DWS-SANVLAVALGQSVYLWSASSGS-------------------VTELCSFGEELVTSVKWS------------PDGSH 231 (484)
T ss_pred hcc-cCCeEEEEecceEEEEecCCCc-------------------eEEeEecCCCceEEEEEC------------CCCCE
Confidence 788 44577777766 9999999877 344444558999999998 89999
Q ss_pred EEEEeCCCcEEEEcCCCCCceeEEEecc-ccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE-eecCCCcEEEEEE
Q 001039 854 FISGSTDCLVKIWDPSLRGSELRATLKG-HTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEE-LKGHDAQVSCVRM 931 (1179)
Q Consensus 854 Lasgs~Dg~I~lWd~~~~~~~~~~~l~~-h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~-~~~h~~~V~~l~~ 931 (1179)
|++|..+|.|.|||.. .......+.+ |...|.+++.++..+.+|+.||.|..+|+...+.... +.+|...|..+.|
T Consensus 232 LavG~~~g~v~iwD~~--~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkw 309 (484)
T KOG0305|consen 232 LAVGTSDGTVQIWDVK--EQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKW 309 (484)
T ss_pred EEEeecCCeEEEEehh--hccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEE
Confidence 9999999999999976 4555567777 9999999999999999999999999999998776555 8899999999999
Q ss_pred e-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcC-CCCEEEEEe--CCCeEEEEeCCCCceeEEeecCCC
Q 001039 932 L-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDD-STGILAAGG--RDAVANIWDIRAGRQMHKFLGHTK 1007 (1179)
Q Consensus 932 s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~sgs--~dg~I~iwD~~~~~~~~~~~~~~~ 1007 (1179)
+ ++.++++|+.|+.+.|||.........+..|...|.+++|+| ....||+|+ .|+.|++||+.+++.+... ....
T Consensus 310 s~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v-dtgs 388 (484)
T KOG0305|consen 310 SPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV-DTGS 388 (484)
T ss_pred CCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc-ccCC
Confidence 9 899999999999999999988889999999999999999999 667888875 6899999999999988876 5567
Q ss_pred CeEEEEEcCCE--EEE--EeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 001039 1008 WIRSIRMDRDT--VIT--GSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDA 1078 (1179)
Q Consensus 1008 ~I~sl~~~~~~--l~s--gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~ 1078 (1179)
.|.++.|++.. +++ |..++.|.||+..+.+.+..+.+|...|..++++|||..+++|+.|.++++|++-+.
T Consensus 389 QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 389 QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 89999997652 444 446778999999999999999999999999999999999999999999999998773
No 83
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=6.7e-26 Score=242.61 Aligned_cols=281 Identities=16% Similarity=0.282 Sum_probs=236.9
Q ss_pred EEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCe--EEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeC
Q 001039 877 ATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQ--LLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDV 951 (1179)
Q Consensus 877 ~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~--~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~ 951 (1179)
..+..|.+.+..+ -++...|++|+.|..|++|++..++ .+.++.|..+.|+.+.|. ++..+++++.|+.+++|++
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv 248 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV 248 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence 4456677777754 5677899999999999999998776 677888899999999998 7889999999999999999
Q ss_pred CCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEE
Q 001039 952 RTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMW 1031 (1179)
Q Consensus 952 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iw 1031 (1179)
.+.+...++.+|.+.|+++.|......+++|+.|.+|+.||+....+.+++ -....+..|...+..+++|..|++|++|
T Consensus 249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~-l~~S~cnDI~~~~~~~~SgH~DkkvRfw 327 (459)
T KOG0288|consen 249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV-LPGSQCNDIVCSISDVISGHFDKKVRFW 327 (459)
T ss_pred cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccc-cccccccceEecceeeeecccccceEEE
Confidence 999999999999999999999988777999999999999999998888775 3344566777778899999999999999
Q ss_pred EccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEe---ecccCceEEEEecCCCEEEEEE
Q 001039 1032 SISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKN---VTIHSSAILSINAGDHWLGIGA 1108 (1179)
Q Consensus 1032 d~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~---~~~h~~~i~sis~dg~~lasgs 1108 (1179)
|.++..+..+...+. .|+++..+++|..+.+++.|.++.+.|+++.+...+... ..++...-..+||++.|+|+||
T Consensus 328 D~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS 406 (459)
T KOG0288|consen 328 DIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS 406 (459)
T ss_pred eccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc
Confidence 999999999988665 999999999999999999999999999998442222221 1234444466799999999999
Q ss_pred CCCcEEEEeCCCCCcCcccCCCCccccceeeeecC--CCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001039 1109 ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQ--KTVAVVRCIASDLERKRICSGGRNGLLRLWE 1174 (1179)
Q Consensus 1109 ~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~--~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWd 1174 (1179)
.||.|+||++.+++ +...+. .....|++++|+|.|..|++++.++.+.+|.
T Consensus 407 ~dgsv~iW~v~tgK---------------lE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 407 ADGSVYIWSVFTGK---------------LEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCCcEEEEEccCce---------------EEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999998543 333332 2223699999999999999999999999993
No 84
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=5.5e-26 Score=243.26 Aligned_cols=280 Identities=23% Similarity=0.394 Sum_probs=236.2
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ecCCCEE
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKV 896 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d~~~l 896 (1179)
....+..|.+.|..+.|- ++...|++|+.|..|++|++.........++.|..+.++++ .+++.++
T Consensus 167 ~~~~ld~h~gev~~v~~l------------~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~ 234 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFL------------RNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHV 234 (459)
T ss_pred hhhhhhccccccceeEEc------------cCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceE
Confidence 455688899999999997 67789999999999999998755556778899998999865 6889999
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCC
Q 001039 897 VSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS 975 (1179)
Q Consensus 897 ~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~ 975 (1179)
++++.|+.+++|++.+.+...++.+|.+.|+++.|. ....+++|+.|.+|+.||+....|.+++. ..+.+..+..+
T Consensus 235 iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~-- 311 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS-- 311 (459)
T ss_pred EeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--
Confidence 999999999999999999999999999999999998 44449999999999999999988888763 33445555555
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE--cCCEEEEEeCCCcEEEEEccCCeeeEEeecC----CcCE
Q 001039 976 TGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACH----AGPV 1049 (1179)
Q Consensus 976 ~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h----~~~V 1049 (1179)
...+++|..|+.|++||++++.+......+. .|+++.. ++..+.+++.|.++.+.|+++.+....+.+. ....
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDw 390 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDW 390 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccc
Confidence 5568899999999999999999998887666 8998877 5568888999999999999998888777632 2348
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCc--eEEEE--ecCCCEEEEEECCCcEEEEe
Q 001039 1050 QCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSS--AILSI--NAGDHWLGIGAADNSMSLFH 1117 (1179)
Q Consensus 1050 ~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~--~i~si--s~dg~~lasgs~Dg~I~iwd 1117 (1179)
+.+.|||++.|+++||.||.|+||++.++ ++.+.+..... .|+++ ++.|..+++++.++.+.+|.
T Consensus 391 trvvfSpd~~YvaAGS~dgsv~iW~v~tg---KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAAGSADGSVYIWSVFTG---KLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeEECCCCceeeeccCCCcEEEEEccCc---eEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 89999999999999999999999999994 44444433333 47665 67899999999999999993
No 85
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=8.9e-24 Score=243.59 Aligned_cols=360 Identities=16% Similarity=0.228 Sum_probs=290.4
Q ss_pred ccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccc
Q 001039 763 EASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKRE 840 (1179)
Q Consensus 763 ~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~ 840 (1179)
...++...|+++.=+|-=..+|.|..+ |.++++..++ .+..++...+.|++++|.
T Consensus 197 ~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dk-------------------il~sFk~d~g~VtslSFr---- 253 (910)
T KOG1539|consen 197 TFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDK-------------------ILMSFKQDWGRVTSLSFR---- 253 (910)
T ss_pred EecccccceeEeccCCcceEEEEeccCceEEEEEcccCc-------------------EEEEEEccccceeEEEec----
Confidence 345666788888888888889999888 9999999887 778888667999999997
Q ss_pred eeccccccCCCC-EEEEEeCCCcEEEEcCCCCCceeEE-EeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCC---
Q 001039 841 VWDLVGDREDAG-FFISGSTDCLVKIWDPSLRGSELRA-TLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTS--- 913 (1179)
Q Consensus 841 ~~~~~~~s~d~~-~Lasgs~Dg~I~lWd~~~~~~~~~~-~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~--- 913 (1179)
.||+ .+|+|+..|.+.+||++ +..+.. ....|.+.+.. +.+....+++++.|..+++|=.+++
T Consensus 254 --------tDG~p~las~~~~G~m~~wDLe--~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~ 323 (910)
T KOG1539|consen 254 --------TDGNPLLASGRSNGDMAFWDLE--KKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV 323 (910)
T ss_pred --------cCCCeeEEeccCCceEEEEEcC--CCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc
Confidence 5665 56778888999999987 344444 44478777774 4677889999999999999966543
Q ss_pred -eEEEEeecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCC-------------------------------------
Q 001039 914 -QLLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRT------------------------------------- 953 (1179)
Q Consensus 914 -~~~~~~~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~------------------------------------- 953 (1179)
+.++.-.||..+..|+.|. .+..+.+++.|++.+.+++..
T Consensus 324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~ 403 (910)
T KOG1539|consen 324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF 403 (910)
T ss_pred chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence 4566678899999999987 577788888888776665411
Q ss_pred ----------------------------CeE-EEEe-----ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 001039 954 ----------------------------DTC-VATV-----GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM 999 (1179)
Q Consensus 954 ----------------------------~~~-~~~~-----~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~ 999 (1179)
... ...+ +.....+++++.++.|++.+.|+..|.|.+|++.+|-..
T Consensus 404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r 483 (910)
T KOG1539|consen 404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR 483 (910)
T ss_pred ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee
Confidence 000 0001 012246789999999999999999999999999999888
Q ss_pred EEe---ecCCCCeEEEEEcCC--EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001039 1000 HKF---LGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074 (1179)
Q Consensus 1000 ~~~---~~~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd 1074 (1179)
.++ ..|.+.|+.++.|+. .+++++.+|.+.+||..+...+..+. -...++++..+.....++.+..|-.|+++|
T Consensus 484 ~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD 562 (910)
T KOG1539|consen 484 KSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVD 562 (910)
T ss_pred cccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEE
Confidence 888 589999999999864 79999999999999999988777776 456788999999999999999999999999
Q ss_pred cCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEE
Q 001039 1075 NDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCI 1152 (1179)
Q Consensus 1075 ~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v 1152 (1179)
..+ .+.++.+.+|+..|.++ ||||+||++++.|++|++||+.+..+ +-. -.-..+.+++
T Consensus 563 ~~t---~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~l---------------ID~-~~vd~~~~sl 623 (910)
T KOG1539|consen 563 VVT---RKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTL---------------IDG-LLVDSPCTSL 623 (910)
T ss_pred chh---hhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcce---------------eee-EecCCcceee
Confidence 998 67888899999999665 89999999999999999999984422 111 1234678899
Q ss_pred EEcCCCCEEEEEeCC-CcEEEEEC
Q 001039 1153 ASDLERKRICSGGRN-GLLRLWEA 1175 (1179)
Q Consensus 1153 ~fspdg~~Lasgs~D-g~I~vWdv 1175 (1179)
.|||+|.+|||+..| .-|++|.=
T Consensus 624 s~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 624 SFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred EECCCCCEEEEEEecCceEEEEEc
Confidence 999999999999988 57999963
No 86
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.7e-25 Score=249.71 Aligned_cols=318 Identities=16% Similarity=0.291 Sum_probs=254.9
Q ss_pred cCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCEEE
Q 001039 778 REASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFI 855 (1179)
Q Consensus 778 pdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~La 855 (1179)
|.|++|.+||.| |++|++...... .....+..+..|.+.|+.++.. .+++.|+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~-------------~s~~~~asme~HsDWVNDiiL~------------~~~~tlI 89 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNE-------------PSTPYIASMEHHSDWVNDIILC------------GNGKTLI 89 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCC-------------cccchhhhhhhhHhHHhhHHhh------------cCCCceE
Confidence 456789999999 999998854410 1112467889999999999887 7899999
Q ss_pred EEeCCCcEEEEcCCCCCceeEEEeccccccEEEEe---cCCCEEEEEeCCCcEEEEECCCCe--EEEE--------ee-c
Q 001039 856 SGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAIN---SDRGKVVSGSDDQSVLVWDKQTSQ--LLEE--------LK-G 921 (1179)
Q Consensus 856 sgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s---~d~~~l~sgs~dg~I~iwd~~t~~--~~~~--------~~-~ 921 (1179)
|+|.|-+|++|+....+.-+..++..|..-|.|+. ++...+|+||-|+.|.+||++++. .+.+ +. |
T Consensus 90 S~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG 169 (735)
T KOG0308|consen 90 SASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSG 169 (735)
T ss_pred EecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCC
Confidence 99999999999987554466788999999999874 578899999999999999999872 2222 22 7
Q ss_pred CCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE
Q 001039 922 HDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMH 1000 (1179)
Q Consensus 922 h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~ 1000 (1179)
+...|++++.+ .+..+++|+..+.+++||.++++.+..+.+|...|.++..++||..++++++||+|++||+...+++.
T Consensus 170 ~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~ 249 (735)
T KOG0308|consen 170 PKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLA 249 (735)
T ss_pred CccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceee
Confidence 88899999988 57788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCeEEEEEcCC--EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 001039 1001 KFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDA 1078 (1179)
Q Consensus 1001 ~~~~~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~ 1078 (1179)
++..|...|+++..+++ .+.+|+.||.|..=|+++......+-..+.+|..+..+.+.+-+.+++.|+.|+-|.....
T Consensus 250 T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 250 TYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred eEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccc
Confidence 99999999999999876 8999999999999999985444444446678888888766666788889999999976542
Q ss_pred CcceEEE----ee---cccCce--------E--------EEEecCCCEEEEEECCCcEEEEeCCC
Q 001039 1079 GGIKCVK----NV---TIHSSA--------I--------LSINAGDHWLGIGAADNSMSLFHRPQ 1120 (1179)
Q Consensus 1079 ~~~~~~~----~~---~~h~~~--------i--------~sis~dg~~lasgs~Dg~I~iwd~~~ 1120 (1179)
.....-. .. ..|... | .++--|.+.+.+-...|.+.+||+-.
T Consensus 330 ~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~ 394 (735)
T KOG0308|consen 330 IALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILA 394 (735)
T ss_pred cccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeee
Confidence 1110000 00 001000 0 11124678999999999999999864
No 87
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=2.3e-24 Score=244.09 Aligned_cols=278 Identities=23% Similarity=0.393 Sum_probs=239.3
Q ss_pred CceeEEEeccccccEEEE-ecCCCEEEEEeCCCcEEEEECCCCeEEE--EeecCCCcEEE-EEEe--CCCEEEEEEcCCe
Q 001039 872 GSELRATLKGHTRTVRAI-NSDRGKVVSGSDDQSVLVWDKQTSQLLE--ELKGHDAQVSC-VRML--SGERVLTASHDGT 945 (1179)
Q Consensus 872 ~~~~~~~l~~h~~~v~~~-s~d~~~l~sgs~dg~I~iwd~~t~~~~~--~~~~h~~~V~~-l~~s--~~~~l~sgs~dg~ 945 (1179)
..++...+.||...|.++ .-++..++++|.||++++|+-..++.+. .+.+|.+.|.+ +++. ++..+++|+.|++
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred cceeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 345678899999998876 4566689999999999999987666544 46778887777 7776 5667999999999
Q ss_pred EEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE-cCCEEEEEeC
Q 001039 946 VKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM-DRDTVITGSD 1024 (1179)
Q Consensus 946 I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~-~~~~l~sgs~ 1024 (1179)
|.+|...+..+..++++|.+.|.|++...++. +++|+.|.++++|-. +++...+.+|+..|+++.. ..+.+++|+.
T Consensus 83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsa 159 (745)
T KOG0301|consen 83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENTYVTGSA 159 (745)
T ss_pred EEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCCcEEeccC
Confidence 99999999999999999999999999888887 899999999999965 5667779999999999887 4559999999
Q ss_pred CCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEe--cCCC
Q 001039 1025 DWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSIN--AGDH 1102 (1179)
Q Consensus 1025 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis--~dg~ 1102 (1179)
|.+|++|.- ++.++++.+|.+.|+++++-+++ .+++++.||.|+.|++.. .++....+|+.-+++++ .++.
T Consensus 160 DKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g----e~l~~~~ghtn~vYsis~~~~~~ 232 (745)
T KOG0301|consen 160 DKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG----EVLLEMHGHTNFVYSISMALSDG 232 (745)
T ss_pred cceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccC----ceeeeeeccceEEEEEEecCCCC
Confidence 999999974 88899999999999999998765 477999999999999954 78888899999999985 7889
Q ss_pred EEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001039 1103 WLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1103 ~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
.++++++|+++++|+.. ++.+........|+++.+-++|. |++|+.||.||||....
T Consensus 233 ~Ivs~gEDrtlriW~~~-----------------e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 233 LIVSTGEDRTLRIWKKD-----------------ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred eEEEecCCceEEEeecC-----------------ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 99999999999999975 55666655566899999988886 67789999999998763
No 88
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=3.4e-24 Score=255.64 Aligned_cols=293 Identities=19% Similarity=0.310 Sum_probs=242.0
Q ss_pred CCcceEEEEEccCCCceeecc--Cc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeeccccee
Q 001039 767 IGRSWVQSMFSREASSRSHSF--SR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVW 842 (1179)
Q Consensus 767 h~~~i~~~~fSpdg~~las~~--~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~ 842 (1179)
++..|..+..+|||..+|||+ .| +++|+.+.--.... ......+..+-....|.+.|+|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~-------~~~~~l~k~l~~m~~h~~sv~CVR~S------ 78 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKE-------EKNENLPKHLCTMDDHDGSVNCVRFS------ 78 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhh-------hhhcccchhheeeccccCceeEEEEC------
Confidence 345577789999999999999 66 88999874221000 00011344677888999999999998
Q ss_pred ccccccCCCCEEEEEeCCCcEEEEcCCC----------------CCceeEEEeccccccEEE--EecCCCEEEEEeCCCc
Q 001039 843 DLVGDREDAGFFISGSTDCLVKIWDPSL----------------RGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQS 904 (1179)
Q Consensus 843 ~~~~~s~d~~~Lasgs~Dg~I~lWd~~~----------------~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~ 904 (1179)
+||++||+||+|+.|.||+... ...+....+.+|...|.. ++|++.++++++.|++
T Consensus 79 ------~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dns 152 (942)
T KOG0973|consen 79 ------PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNS 152 (942)
T ss_pred ------CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccce
Confidence 8999999999999999999651 012356788999999985 5899999999999999
Q ss_pred EEEEECCCCeEEEEeecCCCcEEEEEEeC-CCEEEEEEcCCeEEEEeCCCCeEEEEeccC------CCcEEEEEEcCCCC
Q 001039 905 VLVWDKQTSQLLEELKGHDAQVSCVRMLS-GERVLTASHDGTVKMWDVRTDTCVATVGRC------SSAVLCMEYDDSTG 977 (1179)
Q Consensus 905 I~iwd~~t~~~~~~~~~h~~~V~~l~~s~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~------~~~v~~l~~sp~~~ 977 (1179)
|.|||..+.+.+..+++|.+.|..+.|.+ |+++++-+.|++|++|++.+-...+.+..+ ...+..+.|||||+
T Consensus 153 Viiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~ 232 (942)
T KOG0973|consen 153 VIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGH 232 (942)
T ss_pred EEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcC
Confidence 99999999999999999999999999995 999999999999999998776666666443 34578899999999
Q ss_pred EEEEEe----CCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC---------------C----EEEEEeCCCcEEEEEcc
Q 001039 978 ILAAGG----RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR---------------D----TVITGSDDWTARMWSIS 1034 (1179)
Q Consensus 978 ~l~sgs----~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~---------------~----~l~sgs~dg~I~iwd~~ 1034 (1179)
+|++.. .-..+.|.+-.+.+.-..+-||.+++.++.|+| + .+|+|+.|++|.||...
T Consensus 233 ~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~ 312 (942)
T KOG0973|consen 233 HLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTA 312 (942)
T ss_pred eecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecC
Confidence 999864 234788999888888888999999999999953 1 68899999999999987
Q ss_pred CCeeeEEee-cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 001039 1035 RGTCDAVLA-CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDA 1078 (1179)
Q Consensus 1035 ~~~~~~~~~-~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~ 1078 (1179)
..+++.... -....|..++|+|||..|+++|.||+|.+...+..
T Consensus 313 ~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 313 LPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred CCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 777765543 34678999999999999999999999999988753
No 89
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.4e-24 Score=219.02 Aligned_cols=259 Identities=17% Similarity=0.329 Sum_probs=217.4
Q ss_pred CCCcEEEEECCCCeEEEEee--cCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCC-CeEEEEeccCCCcEEEEEEcC-
Q 001039 901 DDQSVLVWDKQTSQLLEELK--GHDAQVSCVRML--SGERVLTASHDGTVKMWDVRT-DTCVATVGRCSSAVLCMEYDD- 974 (1179)
Q Consensus 901 ~dg~I~iwd~~t~~~~~~~~--~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~~~~~v~~l~~sp- 974 (1179)
..|++.|.++..++-+.... .-.+.+..++|+ ..+.+++++.||++++||... ..++..++.|...|.++.|++
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~ 115 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV 115 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc
Confidence 36788888886444333332 245678999999 477899999999999999643 357888899999999999998
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEc---CCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEE
Q 001039 975 STGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD---RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQC 1051 (1179)
Q Consensus 975 ~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~ 1051 (1179)
.+..+++++.||+|++||...++.+.++.+|...|....|+ ++.+++++.||++++||++.......+..|...|.+
T Consensus 116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~ 195 (311)
T KOG0277|consen 116 RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILC 195 (311)
T ss_pred cceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEe
Confidence 56677888999999999999999999999999999999995 569999999999999999876555558899999999
Q ss_pred EEEec-CCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ec-CCCEEEEEECCCcEEEEeCCCCCcCccc
Q 001039 1052 VEYSS-SDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NA-GDHWLGIGAADNSMSLFHRPQERLGGFS 1127 (1179)
Q Consensus 1052 l~~sp-dg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~-dg~~lasgs~Dg~I~iwd~~~~~~~~~~ 1127 (1179)
+.|+. +.+.++||+.|+.|+.||+++-+ ..+..+.+|.-.|..+ || ....||+++.|-+++|||...+
T Consensus 196 cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~------ 267 (311)
T KOG0277|consen 196 CDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ------ 267 (311)
T ss_pred ecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc------
Confidence 99987 56678999999999999999854 4567778999999777 44 4578999999999999998733
Q ss_pred CCCCccccceeeeecCCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 001039 1128 GTGSKMSGWQLYRTPQKTVAVVRCIASDL-ERKRICSGGRNGLLRLWEA 1175 (1179)
Q Consensus 1128 ~~g~~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~Lasgs~Dg~I~vWdv 1175 (1179)
+ .++.+...|+.-|..+.||+ ++.++|+++.|+.++||+.
T Consensus 268 -d-------s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 268 -D-------SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred -h-------hhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 1 35566678999999999997 6789999999999999984
No 90
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=2.4e-23 Score=247.47 Aligned_cols=282 Identities=20% Similarity=0.226 Sum_probs=213.2
Q ss_pred CCcccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeec
Q 001039 760 QPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVT 837 (1179)
Q Consensus 760 ~~~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~ 837 (1179)
++..-..|-.++....+++|+..+++++.+ ...|+..++...- .....+ +.......+.||.+.|++++|+|
T Consensus 12 ~~~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~----~~~~~G--~~~~~~~~l~GH~~~V~~v~fsP 85 (493)
T PTZ00421 12 VPARPDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVL----KHTDYG--KLASNPPILLGQEGPIIDVAFNP 85 (493)
T ss_pred ccCCcccceeccccccccCCCCCcEeECCceEEEEEecCCceEEe----eccccc--cCCCCCceEeCCCCCEEEEEEcC
Confidence 444444455677777899998888888777 6789876553110 001111 11122345889999999999983
Q ss_pred ccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC-----ceeEEEeccccccEEE--EecCC-CEEEEEeCCCcEEEEE
Q 001039 838 KREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG-----SELRATLKGHTRTVRA--INSDR-GKVVSGSDDQSVLVWD 909 (1179)
Q Consensus 838 ~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~-----~~~~~~l~~h~~~v~~--~s~d~-~~l~sgs~dg~I~iwd 909 (1179)
.++++|++|+.||+|++||+...+ ...+..+.+|...|.+ ++|++ +.|++|+.|++|++||
T Consensus 86 -----------~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWD 154 (493)
T PTZ00421 86 -----------FDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWD 154 (493)
T ss_pred -----------CCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEE
Confidence 278899999999999999986332 1345678999999986 47765 6899999999999999
Q ss_pred CCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCc-EEEEEEcCCCCEEEEEe----
Q 001039 910 KQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA-VLCMEYDDSTGILAAGG---- 983 (1179)
Q Consensus 910 ~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~-v~~l~~sp~~~~l~sgs---- 983 (1179)
+.+++.+..+.+|...|.+++|+ ++..+++|+.||+|++||+++++.+..+..|.+. +..+.|.+++..+++++
T Consensus 155 l~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s 234 (493)
T PTZ00421 155 VERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKS 234 (493)
T ss_pred CCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCC
Confidence 99999999999999999999999 7889999999999999999999998888887654 45678888888777654
Q ss_pred CCCeEEEEeCCCCc-eeEEeecCC-CCeEEEEE--cCCEEEEEe-CCCcEEEEEccCCeeeEEeec-CCcCEEEEEEecC
Q 001039 984 RDAVANIWDIRAGR-QMHKFLGHT-KWIRSIRM--DRDTVITGS-DDWTARMWSISRGTCDAVLAC-HAGPVQCVEYSSS 1057 (1179)
Q Consensus 984 ~dg~I~iwD~~~~~-~~~~~~~~~-~~I~sl~~--~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~spd 1057 (1179)
.|+.|++||+++.. +......+. ..+....+ +++.+++|+ .||.|++||+.+++....... +..++.+++|.|.
T Consensus 235 ~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 235 QQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred CCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 47899999998764 333333333 33444445 455777776 599999999999987766543 4557888888885
Q ss_pred C
Q 001039 1058 D 1058 (1179)
Q Consensus 1058 g 1058 (1179)
-
T Consensus 315 ~ 315 (493)
T PTZ00421 315 W 315 (493)
T ss_pred c
Confidence 3
No 91
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.9e-24 Score=252.07 Aligned_cols=244 Identities=20% Similarity=0.356 Sum_probs=204.8
Q ss_pred eEEEe-cccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCC----------------------------
Q 001039 820 IRIIR-GHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSL---------------------------- 870 (1179)
Q Consensus 820 ~~~l~-gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~---------------------------- 870 (1179)
.+.+. +|.++|+++.|| +||+|||+||.||.|+||.+..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS------------~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~ 326 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFS------------HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPST 326 (712)
T ss_pred eeccccccCCcEEEEEeC------------CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccc
Confidence 34455 899999999998 8999999999999999998643
Q ss_pred C------------------------------CceeEEEeccccccEEEEec-CCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 001039 871 R------------------------------GSELRATLKGHTRTVRAINS-DRGKVVSGSDDQSVLVWDKQTSQLLEEL 919 (1179)
Q Consensus 871 ~------------------------------~~~~~~~l~~h~~~v~~~s~-d~~~l~sgs~dg~I~iwd~~t~~~~~~~ 919 (1179)
. ..++...+.||.+.|..+++ .+++|++++.|.+|++|++...+++..|
T Consensus 327 s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F 406 (712)
T KOG0283|consen 327 SSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF 406 (712)
T ss_pred cccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE
Confidence 0 00123455789999998864 5678999999999999999999999998
Q ss_pred ecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 001039 920 KGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR 997 (1179)
Q Consensus 920 ~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~ 997 (1179)
. |.+.|+|++|+ |++++++|+-||.|+||++...+.+.-. ....-|++++|.|+|+..++|+.+|..++|++...+
T Consensus 407 ~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 407 S-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred e-cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCe
Confidence 7 99999999999 7899999999999999999877766554 445889999999999999999999999999999877
Q ss_pred eeEEee--cC------CCCeEEEEEc---CCEEEEEeCCCcEEEEEccCCeeeEEeecCCc--CEEEEEEecCCCEEEEE
Q 001039 998 QMHKFL--GH------TKWIRSIRMD---RDTVITGSDDWTARMWSISRGTCDAVLACHAG--PVQCVEYSSSDRGIITG 1064 (1179)
Q Consensus 998 ~~~~~~--~~------~~~I~sl~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~--~V~~l~~spdg~~l~sg 1064 (1179)
...... .+ ...|+.+.+. ++.+++.+.|..|||+|.++...+..++++.. .-....|+.||++|++|
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA 564 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence 655432 11 2279999884 45799999999999999988888888886543 34567899999999999
Q ss_pred eCCCcEEEEEcCC
Q 001039 1065 SSDGLLRFWENDD 1077 (1179)
Q Consensus 1065 s~Dg~I~iwd~~~ 1077 (1179)
++|..|++|+...
T Consensus 565 seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 565 SEDSWVYIWKNDS 577 (712)
T ss_pred ecCceEEEEeCCC
Confidence 9999999999854
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=8.2e-24 Score=227.64 Aligned_cols=273 Identities=20% Similarity=0.365 Sum_probs=237.3
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEE
Q 001039 890 NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVL 968 (1179)
Q Consensus 890 s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~ 968 (1179)
.+..+.+++|+.|.++.++|..+++.+..++||...|+.+.++ +...+++++.|..|++|.............|..+|+
T Consensus 228 ~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~ 307 (506)
T KOG0289|consen 228 IPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVT 307 (506)
T ss_pred cCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccce
Confidence 4446889999999999999999999999999999999999999 577889999999999999988888888889999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC--CCCeEEEEEcCC--EEEEEeCCCcEEEEEccCCeeeEEeec
Q 001039 969 CMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH--TKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLAC 1044 (1179)
Q Consensus 969 ~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~--~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~ 1044 (1179)
.+..+|.|.|+++++.||+..+.|++++..+...... .-.+++.+++++ .+.+|..||.|++||+.++.....+.+
T Consensus 308 ~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg 387 (506)
T KOG0289|consen 308 GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG 387 (506)
T ss_pred eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC
Confidence 9999999999999999999999999999988776543 346888999665 888999999999999999999999999
Q ss_pred CCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCCCCCcC
Q 001039 1045 HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLG 1124 (1179)
Q Consensus 1045 h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~ 1124 (1179)
|.++|..++|+.+|-++++++.|+.|++||++.....+.+..-......-+++...|.+++.++.|=.|++++-.+
T Consensus 388 ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~---- 463 (506)
T KOG0289|consen 388 HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT---- 463 (506)
T ss_pred CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc----
Confidence 9999999999999999999999999999999984433333322222234456678899999998877777776442
Q ss_pred cccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001039 1125 GFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEA 1175 (1179)
Q Consensus 1125 ~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv 1175 (1179)
..|.+......|.+..+++.|..+.++++++|.|..++++.+
T Consensus 464 ---------k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 464 ---------KSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ---------ccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 368899999999999999999999999999999999998865
No 93
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4.7e-24 Score=231.84 Aligned_cols=287 Identities=22% Similarity=0.354 Sum_probs=228.3
Q ss_pred CcccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecc
Q 001039 761 PAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTK 838 (1179)
Q Consensus 761 ~~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~ 838 (1179)
-.....|+.++++++++||+++..+++.+ |.-|++.++...............+-.+..... ++|...|.+++.|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS-- 211 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR-KGHVKEILTLAVS-- 211 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc-ccccceeEEEEEc--
Confidence 34567889999999999999999999999 999999998744211111111111111112222 5999999999998
Q ss_pred cceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeEE
Q 001039 839 REVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLL 916 (1179)
Q Consensus 839 ~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~ 916 (1179)
+||++||+|+.|..|.||+.+ +.+.++.+.+|.+.|.++ -.....+++++.|++|++|+++....+
T Consensus 212 ----------~Dgkylatgg~d~~v~Iw~~~--t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v 279 (479)
T KOG0299|consen 212 ----------SDGKYLATGGRDRHVQIWDCD--TLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV 279 (479)
T ss_pred ----------CCCcEEEecCCCceEEEecCc--ccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH
Confidence 899999999999999999976 667778899999999965 456678999999999999999999999
Q ss_pred EEeecCCCcEEEEEEeCCCEEEE-EEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 001039 917 EELKGHDAQVSCVRMLSGERVLT-ASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRA 995 (1179)
Q Consensus 917 ~~~~~h~~~V~~l~~s~~~~l~s-gs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~ 995 (1179)
.++.+|.+.|..+....-..++| |+.|+++++|++.. +....+.++.+.+-|++|-.+. .+++|+.||.|.+|++.+
T Consensus 280 etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~-HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 280 ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDE-HFVSGSDNGSIALWSLLK 357 (479)
T ss_pred HHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEeccc-ceeeccCCceEEEeeecc
Confidence 99999999999998886555555 55999999999943 3344556788899999997655 588999999999999999
Q ss_pred CceeEEeec-C-----------CCCeEEEEE--cCCEEEEEeCCCcEEEEEccCC----eeeEEeecCCcCEEEEEEecC
Q 001039 996 GRQMHKFLG-H-----------TKWIRSIRM--DRDTVITGSDDWTARMWSISRG----TCDAVLACHAGPVQCVEYSSS 1057 (1179)
Q Consensus 996 ~~~~~~~~~-~-----------~~~I~sl~~--~~~~l~sgs~dg~I~iwd~~~~----~~~~~~~~h~~~V~~l~~spd 1057 (1179)
.+++.+... | ..+|++++. ..+++++|+.+|.|++|-+..+ +++..+. -.+.|++++|+++
T Consensus 358 Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~s 436 (479)
T KOG0299|consen 358 KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNS 436 (479)
T ss_pred cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccC
Confidence 888776531 1 127888887 4569999999999999999887 3444444 6789999999999
Q ss_pred CCEEEEEe
Q 001039 1058 DRGIITGS 1065 (1179)
Q Consensus 1058 g~~l~sgs 1065 (1179)
|+.+++|-
T Consensus 437 gk~ivagi 444 (479)
T KOG0299|consen 437 GKRIVAGI 444 (479)
T ss_pred CCEEEEec
Confidence 99777663
No 94
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=6.3e-24 Score=218.98 Aligned_cols=305 Identities=17% Similarity=0.278 Sum_probs=233.6
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEE
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVS 898 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~s 898 (1179)
....+..|++++.+-+|+ +||.++|||+.|..|+|.|++ ..+.+. .+. .+..
T Consensus 104 Et~ylt~HK~~cR~aafs------------~DG~lvATGsaD~SIKildve---rmlaks--~~~-----------em~~ 155 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFS------------PDGSLVATGSADASIKILDVE---RMLAKS--KPK-----------EMIS 155 (430)
T ss_pred ceEEEeecccceeeeeeC------------CCCcEEEccCCcceEEEeehh---hhhhhc--chh-----------hhcc
Confidence 456788899999999998 899999999999999999975 111110 111 1111
Q ss_pred EeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeC-CCEEEEEEcCCeEEEEeCCCCeEEEEec--cCCCcEEEEEEcCC
Q 001039 899 GSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS-GERVLTASHDGTVKMWDVRTDTCVATVG--RCSSAVLCMEYDDS 975 (1179)
Q Consensus 899 gs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~ 975 (1179)
+..+. ..-.++++..|.+.|+++.|++ ...|++|+.|++|+++|+......+.++ ....+|.++.|+|.
T Consensus 156 ~~~qa--------~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs 227 (430)
T KOG0640|consen 156 GDTQA--------RHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS 227 (430)
T ss_pred CCccc--------CCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC
Confidence 11111 1246788889999999999995 6788999999999999997644332222 34568999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEe---ecCCCCeEEEEEc--CCEEEEEeCCCcEEEEEccCCeeeEEee-cCC-cC
Q 001039 976 TGILAAGGRDAVANIWDIRAGRQMHKF---LGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLA-CHA-GP 1048 (1179)
Q Consensus 976 ~~~l~sgs~dg~I~iwD~~~~~~~~~~---~~~~~~I~sl~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~-~~ 1048 (1179)
|.++++|.....+++||+++.++...- ..|.+.|+++.++ +++.++|+.||.|++||--+++|+.++. .|. ..
T Consensus 228 GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gse 307 (430)
T KOG0640|consen 228 GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSE 307 (430)
T ss_pred CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCce
Confidence 999999999999999999998876543 4688899999995 4599999999999999999999988875 454 46
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccC--ceE-----EEEecCCCEEEEEE-CCCcEEEEeCCC
Q 001039 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHS--SAI-----LSINAGDHWLGIGA-ADNSMSLFHRPQ 1120 (1179)
Q Consensus 1049 V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~--~~i-----~sis~dg~~lasgs-~Dg~I~iwd~~~ 1120 (1179)
|.+..|..+|+++++.+.|..+++|.+.++ +++....|.. +.. ..++....++..-. ..+.+.-||..+
T Consensus 308 vcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~---R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRt 384 (430)
T KOG0640|consen 308 VCSAVFTKNGKYILSSGKDSTVKLWEISTG---RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDART 384 (430)
T ss_pred eeeEEEccCCeEEeecCCcceeeeeeecCC---ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccc
Confidence 899999999999999999999999999994 5555554431 111 11234445555433 357899999873
Q ss_pred CCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1121 ERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1121 ~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
+.+...| ..+|.+.++.+.-||.+.-+.+||.|-.+|+|--.
T Consensus 385 ---------adr~~l~-----slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 385 ---------ADRVALL-----SLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ---------hhhhhhc-----ccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 3222222 35899999999999999999999999999999643
No 95
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.2e-23 Score=236.99 Aligned_cols=331 Identities=19% Similarity=0.246 Sum_probs=257.6
Q ss_pred ceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecc-cc
Q 001039 770 SWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDL-VG 846 (1179)
Q Consensus 770 ~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~-~~ 846 (1179)
.-+++.|+|....+.+.-+| +.|||++.-...+ ....+..|+..|++|.--|- ++-+. .+
T Consensus 326 D~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvg----------------k~~s~lyHS~ciW~Ve~~p~-nv~~~~~a 388 (1080)
T KOG1408|consen 326 DAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVG----------------KCSSMLYHSACIWDVENLPC-NVHSPTAA 388 (1080)
T ss_pred ceeEEEecCCCceEEEEEcCceEEEEecccccccc----------------ceeeeeeccceeeeeccccc-cccCcccc
Confidence 34778999999998888777 9999999655433 45667789999999987641 11000 00
Q ss_pred ccCCCCEEEEEeCCCcEEEEcCCCCC--ce---------eEEE------------------------eccccccEE--EE
Q 001039 847 DREDAGFFISGSTDCLVKIWDPSLRG--SE---------LRAT------------------------LKGHTRTVR--AI 889 (1179)
Q Consensus 847 ~s~d~~~Lasgs~Dg~I~lWd~~~~~--~~---------~~~~------------------------l~~h~~~v~--~~ 889 (1179)
--| ...++|++.||+||+||+.... .. +.+. .-+....+. ++
T Consensus 389 clp-~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~v 467 (1080)
T KOG1408|consen 389 CLP-RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAV 467 (1080)
T ss_pred cCC-ccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEE
Confidence 002 2348899999999999976311 00 0000 001122233 56
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeC----CCEEEEEEcCCeEEEEeCCCC-eEEEEeccCC
Q 001039 890 NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS----GERVLTASHDGTVKMWDVRTD-TCVATVGRCS 964 (1179)
Q Consensus 890 s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~----~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~~ 964 (1179)
+|+|++|++|...|+++||++..-+....+..|+..|.|+.|+. ..+|++++.|..|++||+... ..++++.+|.
T Consensus 468 Sp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HS 547 (1080)
T KOG1408|consen 468 SPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHS 547 (1080)
T ss_pred CCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccc
Confidence 99999999999999999999999999999999999999999982 567999999999999998654 5678889999
Q ss_pred CcEEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCceeEEeec-----CCCCeEEEEEcCC--EEEEEeCCCcEEEEEccC
Q 001039 965 SAVLCMEYDDST--GILAAGGRDAVANIWDIRAGRQMHKFLG-----HTKWIRSIRMDRD--TVITGSDDWTARMWSISR 1035 (1179)
Q Consensus 965 ~~v~~l~~sp~~--~~l~sgs~dg~I~iwD~~~~~~~~~~~~-----~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~ 1035 (1179)
+.|+++.|.-+| ..+++++.|..|.+--.+.......+.. ....+..++.+++ ++++++.|..|+|||+.+
T Consensus 548 ssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~s 627 (1080)
T KOG1408|consen 548 SSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIES 627 (1080)
T ss_pred cceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccc
Confidence 999999998877 6788888888775432221111112221 2346778888765 899999999999999999
Q ss_pred CeeeEEeec---CCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECC
Q 001039 1036 GTCDAVLAC---HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAAD 1110 (1179)
Q Consensus 1036 ~~~~~~~~~---h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~D 1110 (1179)
|+..+.+++ |++....+...|.|.|+++.+.|.++.++|..+ .+|+....||...|+.+ .+|-+.|++.+.|
T Consensus 628 gKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s---gEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD 704 (1080)
T KOG1408|consen 628 GKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS---GECVAQMTGHSEAVTGVKFLNDCKHLISVSGD 704 (1080)
T ss_pred cceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEecc---chhhhhhcCcchheeeeeecccchhheeecCC
Confidence 999999874 667888999999999999999999999999999 67888899999999776 7899999999999
Q ss_pred CcEEEEeCCCC
Q 001039 1111 NSMSLFHRPQE 1121 (1179)
Q Consensus 1111 g~I~iwd~~~~ 1121 (1179)
|.|.||.++..
T Consensus 705 gCIFvW~lp~~ 715 (1080)
T KOG1408|consen 705 GCIFVWKLPLT 715 (1080)
T ss_pred ceEEEEECchh
Confidence 99999998754
No 96
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4e-22 Score=225.94 Aligned_cols=371 Identities=15% Similarity=0.200 Sum_probs=277.4
Q ss_pred cCCcceEEEEEccCCCceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecc
Q 001039 766 GIGRSWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDL 844 (1179)
Q Consensus 766 gh~~~i~~~~fSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~ 844 (1179)
+..++|-.++|++.|+++.++.+. |.-||+.++. +...+....++|++++.+
T Consensus 67 ~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk-------------------~~~~~d~~gg~IWsiai~-------- 119 (691)
T KOG2048|consen 67 PEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLK-------------------QKYNIDSNGGAIWSIAIN-------- 119 (691)
T ss_pred CCCCceeeEEEccCCeEEeecCCceEEEEecccCc-------------------eeEEecCCCcceeEEEeC--------
Confidence 344678888999888888777777 9999999887 678888899999999998
Q ss_pred ccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeEEEEe---
Q 001039 845 VGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEEL--- 919 (1179)
Q Consensus 845 ~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~--- 919 (1179)
|.+..++.|++||.+...+.....-+....+...++.+.++ ++++..+++|+.||.|++||..++..+...
T Consensus 120 ----p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~ 195 (691)
T KOG2048|consen 120 ----PENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQ 195 (691)
T ss_pred ----CccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeec
Confidence 78899999999997777776533334445566667788865 678888999999999999999998876622
Q ss_pred ----e-cCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 001039 920 ----K-GHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR 994 (1179)
Q Consensus 920 ----~-~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~ 994 (1179)
. +...-|+++.+...+.+++|...|+|.+||...+..++.+..|...|.+++..++++.+++++.|+.|..+...
T Consensus 196 ~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 196 LDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLT 275 (691)
T ss_pred ccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEec
Confidence 1 13345788888888899999999999999999999999999999999999999999999999999999999877
Q ss_pred CCce----eEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCe-----------------------e---------
Q 001039 995 AGRQ----MHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGT-----------------------C--------- 1038 (1179)
Q Consensus 995 ~~~~----~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~-----------------------~--------- 1038 (1179)
+++. ......|...+.+++.-++.+++|+.|.++.+-..+..+ .
T Consensus 276 ~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v 355 (691)
T KOG2048|consen 276 TNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGV 355 (691)
T ss_pred CCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccc
Confidence 6643 222357888899999988899999998888775432200 0
Q ss_pred -------------------eEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEE--eeccc--CceEE
Q 001039 1039 -------------------DAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVK--NVTIH--SSAIL 1095 (1179)
Q Consensus 1039 -------------------~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~--~~~~h--~~~i~ 1095 (1179)
.+........|.+.+.||+|++++.+.- ...++|.+......+... ..... ...-.
T Consensus 356 ~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i 434 (691)
T KOG2048|consen 356 DLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAI 434 (691)
T ss_pred cceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhhccceee
Confidence 0001112345889999999999998864 347788877643222111 11111 12224
Q ss_pred EEecCCCEEEEEE-CCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001039 1096 SINAGDHWLGIGA-ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1174 (1179)
Q Consensus 1096 sis~dg~~lasgs-~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWd 1174 (1179)
.++-|++.++..+ .+..+.+++..+. ++..+.. ...++....|..++.||||++||..+.+|.|.+|+
T Consensus 435 ~ftid~~k~~~~s~~~~~le~~el~~p-------s~kel~~----~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~n 503 (691)
T KOG2048|consen 435 SFTIDKNKLFLVSKNIFSLEEFELETP-------SFKELKS----IQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYN 503 (691)
T ss_pred EEEecCceEEEEecccceeEEEEecCc-------chhhhhc----cccccCCCcceeEEEcCCCCEEEEEeccceEEEEE
Confidence 4466777777776 6778888887643 2211110 11224567899999999999999999999999999
Q ss_pred CCCCC
Q 001039 1175 ATINI 1179 (1179)
Q Consensus 1175 v~tg~ 1179 (1179)
+++++
T Consensus 504 l~~~~ 508 (691)
T KOG2048|consen 504 LETLE 508 (691)
T ss_pred cccce
Confidence 98863
No 97
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.4e-23 Score=239.68 Aligned_cols=263 Identities=20% Similarity=0.350 Sum_probs=228.5
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeEEEEeec-CCCcE
Q 001039 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG-HDAQV 926 (1179)
Q Consensus 850 d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~-h~~~V 926 (1179)
..+.+|.|. ...|++|+... .........+...|+++ +++|.+|++|..+|.|.|||..+.+.+..+.+ |...|
T Consensus 187 s~n~laVal-g~~vylW~~~s--~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rv 263 (484)
T KOG0305|consen 187 SANVLAVAL-GQSVYLWSASS--GSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRV 263 (484)
T ss_pred cCCeEEEEe-cceEEEEecCC--CceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCcee
Confidence 456677665 44799999663 33333333347777765 78999999999999999999999999999998 99999
Q ss_pred EEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEE-eccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC
Q 001039 927 SCVRMLSGERVLTASHDGTVKMWDVRTDTCVAT-VGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH 1005 (1179)
Q Consensus 927 ~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~ 1005 (1179)
.+++|. +..+.+|+.||.|..+|++..+.... +.+|...|..+.|++|++++|+|+.|+.+.|||.....+...+..|
T Consensus 264 g~laW~-~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H 342 (484)
T KOG0305|consen 264 GSLAWN-SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEH 342 (484)
T ss_pred EEEecc-CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEecc
Confidence 999998 67889999999999999998876555 7889999999999999999999999999999999989999999999
Q ss_pred CCCeEEEEEcC---CEEEEEe--CCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEe--CCCcEEEEEcCCC
Q 001039 1006 TKWIRSIRMDR---DTVITGS--DDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS--SDGLLRFWENDDA 1078 (1179)
Q Consensus 1006 ~~~I~sl~~~~---~~l~sgs--~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs--~Dg~I~iwd~~~~ 1078 (1179)
.+.|.+++|+| +.||+|+ .|++|++||..+++.+..+. ..+.|.++.|++..+-|+++. .++.|.||+..+
T Consensus 343 ~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps- 420 (484)
T KOG0305|consen 343 TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS- 420 (484)
T ss_pred ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-
Confidence 99999999965 4888875 79999999999999988876 567899999999998887654 577899999998
Q ss_pred CcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCC
Q 001039 1079 GGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQ 1120 (1179)
Q Consensus 1079 ~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~ 1120 (1179)
...+..+.+|...|+.+ +|||..+++|+.|.++++|++-.
T Consensus 421 --~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 421 --MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred --cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 78888899999999766 89999999999999999999864
No 98
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.2e-22 Score=198.84 Aligned_cols=299 Identities=21% Similarity=0.289 Sum_probs=233.7
Q ss_pred cccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeeccc
Q 001039 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1179)
Q Consensus 762 ~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~ 839 (1179)
+.+..-.+.|.+++|.|.|.+-|.|++. .|+--...-... ... ..+...+..-..+.-+.|.+.|+|.+|+
T Consensus 26 i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~---r~~-hea~~~pp~v~~kr~khhkgsiyc~~ws--- 98 (350)
T KOG0641|consen 26 INILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDL---RHA-HEAAKQPPSVLCKRNKHHKGSIYCTAWS--- 98 (350)
T ss_pred EEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCc---ccc-cccccCCCeEEeeeccccCccEEEEEec---
Confidence 3345566788999999999999999887 444322111000 000 0000001111234556799999999998
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCce---eEEEeccccccEEEE------ecCCCEEEEEe-CCCcEEEEE
Q 001039 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSE---LRATLKGHTRTVRAI------NSDRGKVVSGS-DDQSVLVWD 909 (1179)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~---~~~~l~~h~~~v~~~------s~d~~~l~sgs-~dg~I~iwd 909 (1179)
|+|+++++|+.|.+|++.-++..+.. ....+.-|.+.|..+ ...+..|++++ .|..|++-|
T Consensus 99 ---------~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~td 169 (350)
T KOG0641|consen 99 ---------PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITD 169 (350)
T ss_pred ---------CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEee
Confidence 89999999999999999876532221 123566688888854 23345666654 467788889
Q ss_pred CCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEecc-------CCCcEEEEEEcCCCCEEEEE
Q 001039 910 KQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGR-------CSSAVLCMEYDDSTGILAAG 982 (1179)
Q Consensus 910 ~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-------~~~~v~~l~~sp~~~~l~sg 982 (1179)
..+|+....+.+|.+.|.++.--++-++++|+.|.+|++||++-..++.++.. ..+.|.+++.+|.|+++++|
T Consensus 170 c~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg 249 (350)
T KOG0641|consen 170 CGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASG 249 (350)
T ss_pred cCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeec
Confidence 99999999999999999988655899999999999999999999998888742 23679999999999999999
Q ss_pred eCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC--EEEEEeCCCcEEEEEccCC----eeeEEeecCCcCEEEEEEec
Q 001039 983 GRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRG----TCDAVLACHAGPVQCVEYSS 1056 (1179)
Q Consensus 983 s~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~----~~~~~~~~h~~~V~~l~~sp 1056 (1179)
-.|....+||++.++.++.+..|...|.++.|+|. ++++++.|..|++-|+... -.+.....|...+..+.|+|
T Consensus 250 ~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~ 329 (350)
T KOG0641|consen 250 HADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHP 329 (350)
T ss_pred cCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecC
Confidence 99999999999999999999999999999999886 8999999999999998642 23455667999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEcC
Q 001039 1057 SDRGIITGSSDGLLRFWEND 1076 (1179)
Q Consensus 1057 dg~~l~sgs~Dg~I~iwd~~ 1076 (1179)
+.-.+++.+.|.++.+|-+.
T Consensus 330 ~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 330 QDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccceeeeccCcceEEEeccC
Confidence 99999999999999999764
No 99
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.8e-22 Score=211.28 Aligned_cols=280 Identities=11% Similarity=0.183 Sum_probs=227.7
Q ss_pred EEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEc--CCeEEEEeC
Q 001039 877 ATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASH--DGTVKMWDV 951 (1179)
Q Consensus 877 ~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~--dg~I~iwd~ 951 (1179)
+.+......|.+ ++.+|..+++++.|.++++||..+++.+.++..+.-.+..++|. ..+.++.++. |.+|+..++
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 444445566665 58999999999999999999999999999999888889999998 5666666665 889999999
Q ss_pred CCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEE
Q 001039 952 RTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMW 1031 (1179)
Q Consensus 952 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iw 1031 (1179)
.+.+.++.+.+|...|.+++.+|-+..+++++.|++|++||++..++...+.....++.+....|-.+|++...+.|++|
T Consensus 88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLy 167 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLY 167 (311)
T ss_pred ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEE
Confidence 99999999999999999999999999999999999999999999888888776666776666666688888888899999
Q ss_pred EccCC--eeeEEee---cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCce-----EEEEecCC
Q 001039 1032 SISRG--TCDAVLA---CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSA-----ILSINAGD 1101 (1179)
Q Consensus 1032 d~~~~--~~~~~~~---~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~-----i~sis~dg 1101 (1179)
|++.- .+-.++. +.....+.+.|||||++++.++..+.+++.|.-++. ...++.++... -.+++||+
T Consensus 168 D~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~---~~~tfs~~~~~~~~~~~a~ftPds 244 (311)
T KOG1446|consen 168 DLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT---VKSTFSGYPNAGNLPLSATFTPDS 244 (311)
T ss_pred EecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc---EeeeEeeccCCCCcceeEEECCCC
Confidence 99863 2333333 346678999999999999999999999999998854 44444433322 24558999
Q ss_pred CEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCC-CcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1102 HWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQK-TVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1102 ~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~-h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
+++.+|+.||+|.+|++. +|. ....+.+ +.+.+.++.|+|.-.++||+ +..+-+|=..
T Consensus 245 ~Fvl~gs~dg~i~vw~~~---------tg~------~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 245 KFVLSGSDDGTIHVWNLE---------TGK------KVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred cEEEEecCCCcEEEEEcC---------CCc------EeeEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence 999999999999999997 553 3333444 78899999999988777766 4567888544
No 100
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=4.7e-22 Score=217.41 Aligned_cols=355 Identities=16% Similarity=0.275 Sum_probs=268.2
Q ss_pred cceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecccc
Q 001039 769 RSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVG 846 (1179)
Q Consensus 769 ~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~ 846 (1179)
.-+.+++|.++|..+ +|.++ |.+|+..+.. ..+....|.+.|.+++..
T Consensus 247 k~Vl~v~F~engdvi-TgDS~G~i~Iw~~~~~~-------------------~~k~~~aH~ggv~~L~~l---------- 296 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVI-TGDSGGNILIWSKGTNR-------------------ISKQVHAHDGGVFSLCML---------- 296 (626)
T ss_pred eEEEEEEEcCCCCEE-eecCCceEEEEeCCCce-------------------EEeEeeecCCceEEEEEe----------
Confidence 446777999999765 55444 9999986554 344445999999999986
Q ss_pred ccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcE
Q 001039 847 DREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQV 926 (1179)
Q Consensus 847 ~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V 926 (1179)
.+|. |+||+.|..|..||-+. .......+....+.+..+.+.+.-|+.|...+.|.-=+++++-. ....+|....
T Consensus 297 --r~Gt-llSGgKDRki~~Wd~~y-~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~-~~v~gh~del 371 (626)
T KOG2106|consen 297 --RDGT-LLSGGKDRKIILWDDNY-RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFT-LTVQGHGDEL 371 (626)
T ss_pred --cCcc-EeecCccceEEeccccc-cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCce-EEEEecccce
Confidence 5565 45599999999999332 22222345667788998987776699998888887767766544 3456788899
Q ss_pred EEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC
Q 001039 927 SCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH 1005 (1179)
Q Consensus 927 ~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~ 1005 (1179)
+.++.+ +.+.+++++.|+.+++|+ ..+...+. ....++.|+.|+|.| .++.|+..|...+.|.++...+..- ..
T Consensus 372 wgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~-~d 446 (626)
T KOG2106|consen 372 WGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIH-TD 446 (626)
T ss_pred eeEEcCCChhheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEE-ec
Confidence 999988 678899999999999999 44444443 346788999999999 8999999999999999985554443 44
Q ss_pred CCCeEEEEEc--CCEEEEEeCCCcEEEEEccCCe-eeEE-eecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcc
Q 001039 1006 TKWIRSIRMD--RDTVITGSDDWTARMWSISRGT-CDAV-LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGI 1081 (1179)
Q Consensus 1006 ~~~I~sl~~~--~~~l~sgs~dg~I~iwd~~~~~-~~~~-~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~ 1081 (1179)
..++++++++ +.++|.|+.|+.|++|.+..+. .... -+.+.++|+.+.||+|++++.+-+.|-.|..|....-...
T Consensus 447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ 526 (626)
T KOG2106|consen 447 NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQI 526 (626)
T ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCccc
Confidence 8889999884 5699999999999999986543 2222 2345589999999999999999999999999954432222
Q ss_pred eEEEeecc---------------cCceE--EEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCC
Q 001039 1082 KCVKNVTI---------------HSSAI--LSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQK 1144 (1179)
Q Consensus 1082 ~~~~~~~~---------------h~~~i--~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~ 1144 (1179)
...+.++- +...+ .+.+.+.+++|+|.+.|+|++|..+-.+.. .......+
T Consensus 527 ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r------------A~~he~~g 594 (626)
T KOG2106|consen 527 TSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPR------------APSHEYGG 594 (626)
T ss_pred ceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCc------------ccceeecc
Confidence 22222221 11111 233567899999999999999998632210 34456779
Q ss_pred CcccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001039 1145 TVAVVRCIASDLERKRICSGGRNGLLRLWEA 1175 (1179)
Q Consensus 1145 h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv 1175 (1179)
|+..|++|+|..+.+.+++.+.|.+|..|++
T Consensus 595 hs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 595 HSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred ccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 9999999999998888888889999999986
No 101
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.9e-23 Score=215.62 Aligned_cols=304 Identities=21% Similarity=0.372 Sum_probs=244.0
Q ss_pred EEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecC--CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEE
Q 001039 853 FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSD--RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVR 930 (1179)
Q Consensus 853 ~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d--~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~ 930 (1179)
.+++.-.+++++ ..+...+.||...|+.++.+ ...+.+++.|.+.+||.+++|.++.++.||.+.|+++.
T Consensus 126 rivssFk~~t~~--------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsik 197 (481)
T KOG0300|consen 126 RIVSSFKDGTVK--------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIK 197 (481)
T ss_pred hheeeecCCcee--------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEE
Confidence 345555566533 23456789999999988543 34678889999999999999999999999999999999
Q ss_pred Ee-CCCEEEEEEcCCeEEEEeC------CC------------------------------C----eEEEEeccCCCcEEE
Q 001039 931 ML-SGERVLTASHDGTVKMWDV------RT------------------------------D----TCVATVGRCSSAVLC 969 (1179)
Q Consensus 931 ~s-~~~~l~sgs~dg~I~iwd~------~~------------------------------~----~~~~~~~~~~~~v~~ 969 (1179)
|+ .+..+++++.|++-.||.. .. + .++..+.+|.+.|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 99 5778889999999999962 10 0 134456788889999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC--EEEEEeCCCcEEEEEccCC-eeeEEeecCC
Q 001039 970 MEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRG-TCDAVLACHA 1046 (1179)
Q Consensus 970 l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~ 1046 (1179)
..|-..|+.+++++.|.+..+||+++|+.+..+.||....+.++-+++ ++++.+.|.+.++||++.. ..+..+++|.
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt 357 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT 357 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccc
Confidence 999999999999999999999999999999999999999988887665 8899999999999999854 4577899999
Q ss_pred cCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeeccc-CceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCc
Q 001039 1047 GPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIH-SSAILSINAGDHWLGIGAADNSMSLFHRPQERLGG 1125 (1179)
Q Consensus 1047 ~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h-~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~ 1125 (1179)
..|+++.|..+. .+++|+.|.+|++||+++.. ..+.++... ...-.+++..+..||.--++..|++||+.+.++..
T Consensus 358 dtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMR--splATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR 434 (481)
T KOG0300|consen 358 DTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMR--SPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR 434 (481)
T ss_pred cceeEEEEecCC-ceeecCCCceEEEeeecccc--CcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCcccc
Confidence 999999998755 58899999999999999843 333333322 12224556777889988889999999997654422
Q ss_pred ccCCCCccccceeeeecCCCcccEEEEEEcCCC--CEEEEEeCCCcEEEEECCCC
Q 001039 1126 FSGTGSKMSGWQLYRTPQKTVAVVRCIASDLER--KRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1126 ~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg--~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
+. ...-++|..-|+|++|..+- .-|.+||.|..+.-|++.+.
T Consensus 435 lP-----------rtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 435 LP-----------RTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred CC-----------cccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 21 12346899999999997653 34889999999999998763
No 102
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=2.1e-22 Score=240.00 Aligned_cols=245 Identities=12% Similarity=0.214 Sum_probs=193.2
Q ss_pred EeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeC--CCEEEEEEcCCeEEEEeCCCCe--------EEEEeccCCCcEE
Q 001039 899 GSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRTDT--------CVATVGRCSSAVL 968 (1179)
Q Consensus 899 gs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~--~~~l~sgs~dg~I~iwd~~~~~--------~~~~~~~~~~~v~ 968 (1179)
|+.+|.+++|+......+..+.+|.+.|.+++|++ ++++++|+.||+|++||+.++. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 56788999999988888889999999999999994 6799999999999999998642 3446678999999
Q ss_pred EEEEcCCCCE-EEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEc--CCEEEEEeCCCcEEEEEccCCeeeEEeecC
Q 001039 969 CMEYDDSTGI-LAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACH 1045 (1179)
Q Consensus 969 ~l~~sp~~~~-l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h 1045 (1179)
+++|+|++.. +++++.||.|++||+++++.+..+. +...|.+++|+ ++.+++++.|+.|++||+++++.+.++.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 9999998875 4688999999999999998877775 56789999995 568999999999999999999999999999
Q ss_pred CcCEEEE-----EEecCCCEEEEEeCCC----cEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEE
Q 001039 1046 AGPVQCV-----EYSSSDRGIITGSSDG----LLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMS 1114 (1179)
Q Consensus 1046 ~~~V~~l-----~~spdg~~l~sgs~Dg----~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~ 1114 (1179)
.+.+.+. .|++++.++++++.|+ .|++||+++.........+..+...+... .++|.++++|+.|++|+
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence 8865443 3458999999988774 79999999643222233333344443333 45688999999999999
Q ss_pred EEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCC
Q 001039 1115 LFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLER 1158 (1179)
Q Consensus 1115 iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg 1158 (1179)
+|++..+.+ ..+... .+..++.+++|.|+.
T Consensus 289 ~~e~~~~~~-------------~~l~~~-~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 289 YYQHSLGSI-------------RKVNEY-KSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEccCCcE-------------Eeeccc-ccCCCccceEEcccc
Confidence 999974311 112222 356778889999864
No 103
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=4.1e-24 Score=232.56 Aligned_cols=287 Identities=19% Similarity=0.314 Sum_probs=235.1
Q ss_pred CCcccccCCcceEEEEEccCCCceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecc
Q 001039 760 QPAEASGIGRSWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTK 838 (1179)
Q Consensus 760 ~~~~~~gh~~~i~~~~fSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~ 838 (1179)
+.+.+..|++-|.++++|...+++.+|+.. |+|||+.... .+.+|..+..-.+
T Consensus 411 rq~~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg--------------------------~k~PvsqLdcl~r 464 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPG--------------------------NKSPVSQLDCLNR 464 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCC--------------------------CCCccccccccCc
Confidence 345668888887778999999999999999 9999998543 1122222222222
Q ss_pred cceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE--EEecCCCEEEEEeCCCcEEEEECCCCeEE
Q 001039 839 REVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLL 916 (1179)
Q Consensus 839 ~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~l~sgs~dg~I~iwd~~t~~~~ 916 (1179)
..-++.+...+||+.|++|+.-.++.|||+...+..+...+......+. ++++|.+..+++..||.|.|||+.+...+
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V 544 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV 544 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence 2222333334999999999999999999988655555555544333443 56999999999999999999999999999
Q ss_pred EEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 001039 917 EELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRA 995 (1179)
Q Consensus 917 ~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~ 995 (1179)
+.++||.+.+.||..+ +|..|.+|+-|++|+.||+++++.+... ...+.|.++.++|++.++++|-.++.+.+.....
T Consensus 545 rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~sk 623 (705)
T KOG0639|consen 545 RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK 623 (705)
T ss_pred ecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCC
Confidence 9999999999999999 7999999999999999999999877654 4568899999999999999999999999888654
Q ss_pred CceeEEeecCCCCeEEEEE--cCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEE
Q 001039 996 GRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFW 1073 (1179)
Q Consensus 996 ~~~~~~~~~~~~~I~sl~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iw 1073 (1179)
. ....+.-|...|.++.| .+.++++.+.|.-+-.|...-|..+...+ ..+.|.++.+|.|.++++||+.|....+|
T Consensus 624 p-~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 624 P-EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred c-cceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEE
Confidence 3 44556688999999998 68899999999999999998888777666 56789999999999999999999988888
Q ss_pred Ec
Q 001039 1074 EN 1075 (1179)
Q Consensus 1074 d~ 1075 (1179)
.+
T Consensus 702 eV 703 (705)
T KOG0639|consen 702 EV 703 (705)
T ss_pred EE
Confidence 65
No 104
>PF12335 SBF2: Myotubularin protein ; InterPro: IPR022096 This domain family is found in eukaryotes, and is approximately 220 amino acids in length. The family is found in association with PF02141 from PFAM, PF03456 from PFAM, PF03455 from PFAM. This family is the middle region of SBF2, a member of the myotubularin family. Myotubularin-related proteins have been suggested to work in phosphoinositide-mediated signalling events that may also convey control of myelination. Mutations of SBF2 are implicated in Charcot-Marie-Tooth disease.
Probab=99.92 E-value=2.8e-25 Score=230.45 Aligned_cols=147 Identities=22% Similarity=0.331 Sum_probs=131.3
Q ss_pred CCCcccccccCccccC-ChHHHHHhhh---------ccchhhhhhhhHHHHHHHhcCCCCCCCCccccccEEeeeccccc
Q 001039 522 NSPPSMLVSKDSKDSL-SPIERAAERD---------RMVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAE 591 (1179)
Q Consensus 522 p~~p~~~~~~~~~~~~-~~~~r~~e~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (1179)
|+||++.++.++...+ .|++||+|++ +|++|++|.+| +|+|+||. +.+|
T Consensus 1 ~~~p~~~~~~~~~~~~~~~s~rrlevlr~ci~~if~~k~~e~~k~~~-av~~~lk~--------------------~~aR 59 (225)
T PF12335_consen 1 PMGPPVVSIVDKNGNVFANSARRLEVLRNCISFIFDNKILEARKSLP-AVLRALKS--------------------RSAR 59 (225)
T ss_pred CCCCCchhHHhcccchhhhHHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHcc--------------------chHH
Confidence 7889887767766654 4999999999 99999999999 99999999 9999
Q ss_pred CCCCCCcchhhhhccccccccccChHHHHHHHHHHHHHHhhhhccCChHHHHHHH-HHHHHHHhhhcCCchhHHHHHHhh
Q 001039 592 GIGGSGFVECIREHIHSGWHCQLTEEQFIAVKELLKTAIGRATSRNDVSTIRDAL-EVSAEMFKKDANNVSDYVQRHLIS 670 (1179)
Q Consensus 592 ~~~~~~~~~~l~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~l-~~~~~~~~~~~~~~~~y~q~~l~~ 670 (1179)
.++ |++|.+|++ ++++.|+++||++|++|||+||++|++ .|+++++++| ++|+.||||+++++.+|+++++..
T Consensus 60 ~~~----~~~L~~~~~-~~k~~L~~~qF~~lv~lin~aLq~~s~-~dd~~~Aa~LL~ls~~fyrkl~~g~~eylyt~i~~ 133 (225)
T PF12335_consen 60 QAF----CRELSKHVK-SNKAVLDDQQFDYLVRLINCALQDCSE-SDDYGIAAALLPLSTAFYRKLSNGVQEYLYTCIQS 133 (225)
T ss_pred HHH----HHHHHHHHh-cCCccCCHHHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHcCcchhHHHHHHHHc
Confidence 988 999999999 788899999999999999999999999 7777777777 999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHH-Hhcccc
Q 001039 671 LSIWEELRFWEGYFDYLMD-RFSSKS 695 (1179)
Q Consensus 671 ~p~~~~~~~~~~~~~~~l~-~~~~~~ 695 (1179)
.|||++++|||++|-+-++ .++...
T Consensus 134 hpvW~n~~FWe~~F~~~vq~~ir~ly 159 (225)
T PF12335_consen 134 HPVWQNQRFWEAAFFDDVQSQIRKLY 159 (225)
T ss_pred CccccchhhHHHHHHHHHHHHHHHHc
Confidence 9999999999999966555 444333
No 105
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=4.3e-23 Score=224.41 Aligned_cols=274 Identities=22% Similarity=0.367 Sum_probs=228.0
Q ss_pred eEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCce--eEE-------------Ee-cccc
Q 001039 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSE--LRA-------------TL-KGHT 883 (1179)
Q Consensus 820 ~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~--~~~-------------~l-~~h~ 883 (1179)
...+..|.-+|++++++ +|+.+.++++.||+|.=|++...... ... .- ++|.
T Consensus 135 ~~~~~~H~~s~~~vals------------~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~ 202 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALS------------PDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHV 202 (479)
T ss_pred ceeeccccCcceEEEee------------ccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccccccc
Confidence 45678899999999998 89999999999999999997632211 000 01 2666
Q ss_pred ccEE--EEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEe
Q 001039 884 RTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV 960 (1179)
Q Consensus 884 ~~v~--~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 960 (1179)
..+. ++++||++|++|+.|..|.||+.++.+.+..+.+|.+.|.+++|- ..+.+++++.|++|++|+++....+.++
T Consensus 203 keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetl 282 (479)
T KOG0299|consen 203 KEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETL 282 (479)
T ss_pred ceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHH
Confidence 6666 469999999999999999999999999999999999999999999 5667999999999999999999999999
Q ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE-cCCEEEEEeCCCcEEEEEccCCeee
Q 001039 961 GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM-DRDTVITGSDDWTARMWSISRGTCD 1039 (1179)
Q Consensus 961 ~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~-~~~~l~sgs~dg~I~iwd~~~~~~~ 1039 (1179)
.+|.+.|..+....-++.+.+|+.|+++++|++.. +....+.++.+.+.|+++ +.+.+++|+.||.|.+|++.+.+++
T Consensus 283 yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkpl 361 (479)
T KOG0299|consen 283 YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPL 361 (479)
T ss_pred hCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCce
Confidence 99999999999999899888888999999999943 334456789999999999 7789999999999999999988887
Q ss_pred EEee-cC-----------CcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCC-cceEEEeecccCceEEEE--ecCCCEE
Q 001039 1040 AVLA-CH-----------AGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAG-GIKCVKNVTIHSSAILSI--NAGDHWL 1104 (1179)
Q Consensus 1040 ~~~~-~h-----------~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~-~~~~~~~~~~h~~~i~si--s~dg~~l 1104 (1179)
.+.. +| ..+|++++..|...++++|+.+|.|++|.+..+- .+..+..+. -.+.|.++ +.+|+.+
T Consensus 362 f~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~i 440 (479)
T KOG0299|consen 362 FTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRI 440 (479)
T ss_pred eEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEE
Confidence 6643 12 2389999999999999999999999999998852 234444443 44556554 6788866
Q ss_pred EEE
Q 001039 1105 GIG 1107 (1179)
Q Consensus 1105 asg 1107 (1179)
++|
T Consensus 441 vag 443 (479)
T KOG0299|consen 441 VAG 443 (479)
T ss_pred EEe
Confidence 666
No 106
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=5.6e-23 Score=221.28 Aligned_cols=276 Identities=22% Similarity=0.372 Sum_probs=239.4
Q ss_pred CceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ecCCCEEEEEeCCCcE
Q 001039 828 GAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSV 905 (1179)
Q Consensus 828 ~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I 905 (1179)
..|+++... +....+++|+.|.++.++|.. ....+..++||...|+.+ +++...+++++.|..|
T Consensus 220 pgi~ald~~------------~s~~~ilTGG~d~~av~~d~~--s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i 285 (506)
T KOG0289|consen 220 PGITALDII------------PSSSKILTGGEDKTAVLFDKP--SNQILATLKGHTKKITSVKFHKDLDTVITASADEII 285 (506)
T ss_pred CCeeEEeec------------CCCCcceecCCCCceEEEecc--hhhhhhhccCcceEEEEEEeccchhheeecCCcceE
Confidence 346777665 446789999999999999954 667778999999999975 7899999999999999
Q ss_pred EEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEecc--CCCcEEEEEEcCCCCEEEEE
Q 001039 906 LVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGR--CSSAVLCMEYDDSTGILAAG 982 (1179)
Q Consensus 906 ~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~sg 982 (1179)
+||.............|.++|+.+..+ .|+++++++.||+..+.|+++|.++..... ..-.+++.+|+|||.++.+|
T Consensus 286 ~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtg 365 (506)
T KOG0289|consen 286 RVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTG 365 (506)
T ss_pred EeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEecc
Confidence 999998888888888999999999998 799999999999999999999998877644 34568999999999999999
Q ss_pred eCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC--EEEEEeCCCcEEEEEccCCeeeEEeecCC-cCEEEEEEecCCC
Q 001039 983 GRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHA-GPVQCVEYSSSDR 1059 (1179)
Q Consensus 983 s~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~spdg~ 1059 (1179)
..||.+++||+.++..+..|.+|.++|.+++|+.+ +++++++|+.|++||++..+..+++...+ ..+.++.|+..|.
T Consensus 366 t~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt 445 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGT 445 (506)
T ss_pred CCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCC
Confidence 99999999999999999999999999999999655 89999999999999999988777776432 4799999999999
Q ss_pred EEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeC
Q 001039 1060 GIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHR 1118 (1179)
Q Consensus 1060 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~ 1118 (1179)
+++.++.|=.|++++-.+ +.+.++..+..|.+....+ ....+++++++.|..++++.+
T Consensus 446 ~L~~~g~~l~Vy~~~k~~-k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 446 YLGIAGSDLQVYICKKKT-KSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eEEeecceeEEEEEeccc-ccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 999998888888887655 4588888888887665555 456789999999999888764
No 107
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=8.7e-23 Score=212.12 Aligned_cols=241 Identities=21% Similarity=0.374 Sum_probs=203.2
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEe--cCC--C
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAIN--SDR--G 894 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s--~d~--~ 894 (1179)
++-.+..|.++|++++.+ +.++||||.|-+|+|||+. .......+..|.+.|+++. ++- +
T Consensus 35 ~lF~~~aH~~sitavAVs--------------~~~~aSGssDetI~IYDm~--k~~qlg~ll~HagsitaL~F~~~~S~s 98 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--------------GPYVASGSSDETIHIYDMR--KRKQLGILLSHAGSITALKFYPPLSKS 98 (362)
T ss_pred ccccccccccceeEEEec--------------ceeEeccCCCCcEEEEecc--chhhhcceeccccceEEEEecCCcchh
Confidence 456778999999999985 9999999999999999976 4444567788999999863 332 3
Q ss_pred EEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeC-CCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEc
Q 001039 895 KVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS-GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYD 973 (1179)
Q Consensus 895 ~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s 973 (1179)
.|++|+.||.|.+|+....+++.++++|.+.|+.++.++ +..-++.+.|+.++.||+-+|+.-....- ....+.+.|+
T Consensus 99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~ 177 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWS 177 (362)
T ss_pred heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEc
Confidence 899999999999999999999999999999999999996 55566889999999999999886555432 2333559999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE-cCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEE
Q 001039 974 DSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM-DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCV 1052 (1179)
Q Consensus 974 p~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l 1052 (1179)
|.|.+++.++.+ .|-+|.+.+......+... ..+.++.| +++.+++|+.|+.|.+||.++..+...+.+|...|.++
T Consensus 178 ~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i 255 (362)
T KOG0294|consen 178 PQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDI 255 (362)
T ss_pred CCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeee
Confidence 999999888764 6889999887766555333 55667777 77899999999999999999999999999999999999
Q ss_pred EE--ecCCCEEEEEeCCCcEEEEEcCCC
Q 001039 1053 EY--SSSDRGIITGSSDGLLRFWENDDA 1078 (1179)
Q Consensus 1053 ~~--spdg~~l~sgs~Dg~I~iwd~~~~ 1078 (1179)
.+ .|++.+|+++|+||.|++||++..
T Consensus 256 ~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 256 ASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEEecCCceEEEEeccCceEEEEEcccc
Confidence 84 567889999999999999999874
No 108
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.9e-23 Score=214.26 Aligned_cols=318 Identities=19% Similarity=0.296 Sum_probs=249.0
Q ss_pred cccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeeccc
Q 001039 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1179)
Q Consensus 762 ~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~ 839 (1179)
.++.||..+|..++-......+.+++.| -++|.++++. |+..+.||.|.|++|+|+
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~-------------------CL~~Y~GH~GSVNsikfh--- 199 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA-------------------CLATYTGHTGSVNSIKFH--- 199 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeecccc-------------------ceeeecccccceeeEEec---
Confidence 3467899999999777777789999988 9999999998 899999999999999998
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeE--EEeccccccEEE-EecCCCEEEEE--eCCC-cEEEEECCCC
Q 001039 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELR--ATLKGHTRTVRA-INSDRGKVVSG--SDDQ-SVLVWDKQTS 913 (1179)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~--~~l~~h~~~v~~-~s~d~~~l~sg--s~dg-~I~iwd~~t~ 913 (1179)
+.+.++++++.|++-.||.... +.+.- ..-.+|.+.--- -+........+ ..|| +|+
T Consensus 200 ---------~s~~L~lTaSGD~taHIW~~av-~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR------- 262 (481)
T KOG0300|consen 200 ---------NSGLLLLTASGDETAHIWKAAV-NWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR------- 262 (481)
T ss_pred ---------cccceEEEccCCcchHHHHHhh-cCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee-------
Confidence 7899999999999999998321 11100 011222221110 01011111111 1122 332
Q ss_pred eEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 001039 914 QLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWD 992 (1179)
Q Consensus 914 ~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD 992 (1179)
.++..+.+|.+.|.+..|. .++.++++++|.+..+||+++|+.+..+.+|....+.++-+|..+++++.+.|.+.++||
T Consensus 263 vPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWD 342 (481)
T KOG0300|consen 263 VPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWD 342 (481)
T ss_pred eeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEecc
Confidence 3667889999999999998 788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-ceeEEeecCCCCeEEEEEc-CCEEEEEeCCCcEEEEEccCCe-eeEEeecCCcCEEEEEEecCCCEEEEEeCCCc
Q 001039 993 IRAG-RQMHKFLGHTKWIRSIRMD-RDTVITGSDDWTARMWSISRGT-CDAVLACHAGPVQCVEYSSSDRGIITGSSDGL 1069 (1179)
Q Consensus 993 ~~~~-~~~~~~~~~~~~I~sl~~~-~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~ 1069 (1179)
.+.. ..+..|+||...|++..|. ++.+++|+.|.+|++||+++.. ++.++. .+++++.++.+..+..|+.-..+..
T Consensus 343 FReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRq 421 (481)
T KOG0300|consen 343 FREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQ 421 (481)
T ss_pred chhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCce
Confidence 9854 3467799999999999995 5699999999999999998764 556665 5788999999998889999989999
Q ss_pred EEEEEcCCCCcceEE-EeecccCceEEEEecC----CCEEEEEECCCcEEEEeCC
Q 001039 1070 LRFWENDDAGGIKCV-KNVTIHSSAILSINAG----DHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1070 I~iwd~~~~~~~~~~-~~~~~h~~~i~sis~d----g~~lasgs~Dg~I~iwd~~ 1119 (1179)
|++||++.....+.- ..-++|...|.+..+. -.-|.+++-|..+.-|.+.
T Consensus 422 vRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 422 VRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred EEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence 999999874422221 1345788888776432 2457788899999999986
No 109
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=7.7e-23 Score=231.62 Aligned_cols=337 Identities=17% Similarity=0.287 Sum_probs=257.5
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCc-----------------------ee
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGS-----------------------EL 875 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~-----------------------~~ 875 (1179)
.+..+.||.+.|.+++|... ..+.-+|||+|.|..||||.+...+. +.
T Consensus 183 ~v~el~GH~DWIrsl~f~~~---------~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i 253 (764)
T KOG1063|consen 183 RVAELEGHTDWIRSLAFARL---------GGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEI 253 (764)
T ss_pred EEEEeeccchhhhhhhhhcc---------CCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeE
Confidence 67889999999999999731 23456899999999999998653220 11
Q ss_pred E------EEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCe--E-----EEEeecCCCcEEEEEEe-CCCEEEE
Q 001039 876 R------ATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQ--L-----LEELKGHDAQVSCVRML-SGERVLT 939 (1179)
Q Consensus 876 ~------~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~--~-----~~~~~~h~~~V~~l~~s-~~~~l~s 939 (1179)
. ..+.||.+.|.++ +|.+..|++++.|.++.+|...+.. - +....+.....+...|+ +++.+++
T Consensus 254 ~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~ 333 (764)
T KOG1063|consen 254 QYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIA 333 (764)
T ss_pred EEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEE
Confidence 1 2235999999975 7888899999999999999876542 1 22233445567888888 6788889
Q ss_pred EEcCCeEEEEeCCCC---eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeEEeecCCCCeEEE
Q 001039 940 ASHDGTVKMWDVRTD---TCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG----RQMHKFLGHTKWIRSI 1012 (1179)
Q Consensus 940 gs~dg~I~iwd~~~~---~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~----~~~~~~~~~~~~I~sl 1012 (1179)
-+..|..++|..... .....+.+|.+.|+.++|+|.|.++++.+.|.+-+++-.-.. ..+..-+-|...++|+
T Consensus 334 ~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~ 413 (764)
T KOG1063|consen 334 HGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCL 413 (764)
T ss_pred ecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceee
Confidence 999999999983332 233445789999999999999999999999999999875411 1223335677889999
Q ss_pred EE-c-CCEEEEEeCCCcEEEEEccC-------------------------------------------Cee---------
Q 001039 1013 RM-D-RDTVITGSDDWTARMWSISR-------------------------------------------GTC--------- 1038 (1179)
Q Consensus 1013 ~~-~-~~~l~sgs~dg~I~iwd~~~-------------------------------------------~~~--------- 1038 (1179)
++ + +-.+++|.....+|+|+... |..
T Consensus 414 ~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~ 493 (764)
T KOG1063|consen 414 SFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPL 493 (764)
T ss_pred ehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccc
Confidence 98 4 34788888888899987421 000
Q ss_pred ------------------------eEEeecCCcCEEEEEEecCCCEEEEEeCC-----CcEEEEEcCCCCcceEEEeecc
Q 001039 1039 ------------------------DAVLACHAGPVQCVEYSSSDRGIITGSSD-----GLLRFWENDDAGGIKCVKNVTI 1089 (1179)
Q Consensus 1039 ------------------------~~~~~~h~~~V~~l~~spdg~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~ 1089 (1179)
+..+-+|...|++++.+|+|+.+|+++.. ..|++|+..+ ......+.+
T Consensus 494 ~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~---W~~~~~L~~ 570 (764)
T KOG1063|consen 494 AAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN---WLQVQELEG 570 (764)
T ss_pred ccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc---hhhhheecc
Confidence 01123577789999999999999998854 3589999888 666678889
Q ss_pred cCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCC
Q 001039 1090 HSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRN 1167 (1179)
Q Consensus 1090 h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~D 1167 (1179)
|+-.|+.+ ||||++|++.+.|.++.+|.........+ .....+.|+-.|++..|+||++++||+|.|
T Consensus 571 HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~-----------~fa~~k~HtRIIWdcsW~pde~~FaTaSRD 639 (764)
T KOG1063|consen 571 HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEF-----------RFACLKAHTRIIWDCSWSPDEKYFATASRD 639 (764)
T ss_pred cceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhh-----------hhccccccceEEEEcccCcccceeEEecCC
Confidence 99998665 89999999999999999999864321111 122367899999999999999999999999
Q ss_pred CcEEEEECCCC
Q 001039 1168 GLLRLWEATIN 1178 (1179)
Q Consensus 1168 g~I~vWdv~tg 1178 (1179)
++|+||....+
T Consensus 640 K~VkVW~~~~~ 650 (764)
T KOG1063|consen 640 KKVKVWEEPDL 650 (764)
T ss_pred ceEEEEeccCc
Confidence 99999998764
No 110
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.3e-21 Score=221.81 Aligned_cols=285 Identities=16% Similarity=0.288 Sum_probs=232.5
Q ss_pred EEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEecccccc-EEEEec-CCCEEEEE
Q 001039 822 IIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRT-VRAINS-DRGKVVSG 899 (1179)
Q Consensus 822 ~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~-v~~~s~-d~~~l~sg 899 (1179)
-+..-..+|+++||+ .+.+.||.+-.||.|-+|++. .+..+...+.++... |-++.. ++..|++.
T Consensus 20 f~d~~Ps~I~slA~s------------~kS~~lAvsRt~g~IEiwN~~-~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~ 86 (691)
T KOG2048|consen 20 FVDYKPSEIVSLAYS------------HKSNQLAVSRTDGNIEIWNLS-NNWFLEPVIHGPEDRSIESLAWAEGGRLFSS 86 (691)
T ss_pred EEeeeccceEEEEEe------------ccCCceeeeccCCcEEEEccC-CCceeeEEEecCCCCceeeEEEccCCeEEee
Confidence 334456789999998 677789999999999999997 566666777776554 444432 68899999
Q ss_pred eCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeC-CCEEEEEEcCCeEEEEeCCCCeEEE--EeccCCCcEEEEEEcCCC
Q 001039 900 SDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS-GERVLTASHDGTVKMWDVRTDTCVA--TVGRCSSAVLCMEYDDST 976 (1179)
Q Consensus 900 s~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~-~~~l~sgs~dg~I~iwd~~~~~~~~--~~~~~~~~v~~l~~sp~~ 976 (1179)
+.+|.|.-||+.+++....+....+.|++++.++ ++.++.|+.||.+..++...++... .+...++.+.+++|++++
T Consensus 87 g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~ 166 (691)
T KOG2048|consen 87 GLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTG 166 (691)
T ss_pred cCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCc
Confidence 9999999999999999999999999999999994 6778899999988888887776543 344567899999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEee--------cCCCCeEEEEE-cCCEEEEEeCCCcEEEEEccCCeeeEEeecCCc
Q 001039 977 GILAAGGRDAVANIWDIRAGRQMHKFL--------GHTKWIRSIRM-DRDTVITGSDDWTARMWSISRGTCDAVLACHAG 1047 (1179)
Q Consensus 977 ~~l~sgs~dg~I~iwD~~~~~~~~~~~--------~~~~~I~sl~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~ 1047 (1179)
..+++|+.||.|++||..++..++... +...-|+++.+ ..+.+++|...|+|.+||...++.+..+..|.+
T Consensus 167 ~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a 246 (691)
T KOG2048|consen 167 TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDA 246 (691)
T ss_pred cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhc
Confidence 999999999999999999988766221 12335677766 677999999999999999999999999999999
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc-ceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCC
Q 001039 1048 PVQCVEYSSSDRGIITGSSDGLLRFWENDDAGG-IKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1048 ~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~-~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
.|.+++..++++++++++.|+.|.-+...+.+. .........|...+.++..-+..+++|+.|+++.+-...
T Consensus 247 dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 247 DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSR 319 (691)
T ss_pred ceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEcccc
Confidence 999999999999999999999999998877543 223334456666776665555588888888888776554
No 111
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.2e-23 Score=225.51 Aligned_cols=273 Identities=21% Similarity=0.364 Sum_probs=222.6
Q ss_pred cCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCCc
Q 001039 827 AGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQS 904 (1179)
Q Consensus 827 ~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~ 904 (1179)
.+.|++++|+|. +..-+|+++ .-.+.+|+.. +....+.+......+.+ |..||+++++|+..|.
T Consensus 26 ~~~vssl~fsp~-----------~P~d~aVt~-S~rvqly~~~--~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~ 91 (487)
T KOG0310|consen 26 HNSVSSLCFSPK-----------HPYDFAVTS-SVRVQLYSSV--TRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGH 91 (487)
T ss_pred cCcceeEecCCC-----------CCCceEEec-ccEEEEEecc--hhhhhhhHHhhccceeEEEeecCCeEEEccCCcCc
Confidence 468999999962 222344444 2368999854 44455556666666764 5789999999999999
Q ss_pred EEEEECCCCeEEEEeecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCC-CCEEEE
Q 001039 905 VLVWDKQTSQLLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS-TGILAA 981 (1179)
Q Consensus 905 I~iwd~~t~~~~~~~~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~-~~~l~s 981 (1179)
|+|+|..+...++.+.+|+.++..+.|+ ++..+++|++|+.+++||+.+......+.+|.+.|.|.+|+|. +..+++
T Consensus 92 V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvt 171 (487)
T KOG0310|consen 92 VKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVT 171 (487)
T ss_pred EEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEe
Confidence 9999987767788899999999999999 5778899999999999999999887788999999999999995 558899
Q ss_pred EeCCCeEEEEeCCCC-ceeEEeecCCCCeEEEEE--cCCEEEEEeCCCcEEEEEccCC-eeeEEeecCCcCEEEEEEecC
Q 001039 982 GGRDAVANIWDIRAG-RQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRG-TCDAVLACHAGPVQCVEYSSS 1057 (1179)
Q Consensus 982 gs~dg~I~iwD~~~~-~~~~~~~~~~~~I~sl~~--~~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~spd 1057 (1179)
|+.||.|++||+++. ..+.++ .|..+|.++.+ ++..+++++ ...|++||+.+| +.+..+..|...|+|+++..+
T Consensus 172 GsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~ 249 (487)
T KOG0310|consen 172 GSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASD 249 (487)
T ss_pred cCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecC
Confidence 999999999999987 555555 78899999888 445777765 458999999855 555555569999999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCC
Q 001039 1058 DRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1058 g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
+..|++|+-||.|++||+.+ .+.+..+. -.++|+++ +|+++.++.|..||.+.+-+..
T Consensus 250 ~~rLlS~sLD~~VKVfd~t~---~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 250 STRLLSGSLDRHVKVFDTTN---YKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred CceEeecccccceEEEEccc---eEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhh
Confidence 99999999999999999877 66776664 45666555 8999999999999999887554
No 112
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.7e-22 Score=210.05 Aligned_cols=262 Identities=16% Similarity=0.314 Sum_probs=213.3
Q ss_pred EEEEEeCCCcEEEEECCCC------------eEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEecc
Q 001039 895 KVVSGSDDQSVLVWDKQTS------------QLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGR 962 (1179)
Q Consensus 895 ~l~sgs~dg~I~iwd~~t~------------~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 962 (1179)
.+++|+....|.-+++.-. .++..+..|.+.+++++.+ +.++++||.|-+|+|||+++...+..+-.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs-~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS-GPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec-ceeEeccCCCCcEEEEeccchhhhcceec
Confidence 3566777666655554321 2345678899999999975 77999999999999999999999999989
Q ss_pred CCCcEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCee
Q 001039 963 CSSAVLCMEYDDSTG--ILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTC 1038 (1179)
Q Consensus 963 ~~~~v~~l~~sp~~~--~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~ 1038 (1179)
|.+.|+++.|.+.-. .|++|+.||.|.+|+....+.+..+++|.+.|+.++.+| .+.++.+.|+.++.||+-+|+.
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 999999999998664 899999999999999999999999999999999999965 4788889999999999998876
Q ss_pred eEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEe-cCCCEEEEEECCCcEEEEe
Q 001039 1039 DAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSIN-AGDHWLGIGAADNSMSLFH 1117 (1179)
Q Consensus 1039 ~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis-~dg~~lasgs~Dg~I~iwd 1117 (1179)
-....- ...-+.+.|+|.|.+++.++.++ |-+|.+++. .....+... ..+.++. -++..+++|++|+.|.+||
T Consensus 162 a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A---~v~~~i~~~-~r~l~~~~l~~~~L~vG~d~~~i~~~D 235 (362)
T KOG0294|consen 162 AFVLNL-KNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNA---SVFREIENP-KRILCATFLDGSELLVGGDNEWISLKD 235 (362)
T ss_pred ceeecc-CCcceeeEEcCCCCEEEEEeccE-EEEEecccH---hHhhhhhcc-ccceeeeecCCceEEEecCCceEEEec
Confidence 555442 22334599999999999888776 889999883 333333222 3444553 4788999999999999999
Q ss_pred CCCCCcCcccCCCCccccceeeeecCCCcccEEEEEE--cCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1118 RPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIAS--DLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1118 ~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~f--spdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
... + .+...+.+|.++|.++.+ .|++.+|+|+|.||.|+|||++..
T Consensus 236 ~ds---------~------~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 236 TDS---------D------TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCC---------C------ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 873 2 567778899999999994 678999999999999999999764
No 113
>PTZ00421 coronin; Provisional
Probab=99.91 E-value=6.6e-22 Score=235.17 Aligned_cols=232 Identities=21% Similarity=0.331 Sum_probs=183.8
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeEE-------------EEeecCCCcEEEEEEeC--CCEEEEEEcCCeEEEEeCC
Q 001039 888 AINSDRGKVVSGSDDQSVLVWDKQTSQLL-------------EELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVR 952 (1179)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~t~~~~-------------~~~~~h~~~V~~l~~s~--~~~l~sgs~dg~I~iwd~~ 952 (1179)
..++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|++ ++.+++|+.||+|++||+.
T Consensus 27 ~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~ 106 (493)
T PTZ00421 27 TALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIP 106 (493)
T ss_pred cccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecC
Confidence 34566666666666666666664433222 24678999999999984 6789999999999999997
Q ss_pred CC-------eEEEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEc--CCEEEEE
Q 001039 953 TD-------TCVATVGRCSSAVLCMEYDDST-GILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITG 1022 (1179)
Q Consensus 953 ~~-------~~~~~~~~~~~~v~~l~~sp~~-~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~--~~~l~sg 1022 (1179)
++ +.+..+.+|...|.+++|+|++ ++|++|+.|+.|++||+++++.+..+.+|...|.+++|+ ++.++++
T Consensus 107 ~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatg 186 (493)
T PTZ00421 107 EEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTT 186 (493)
T ss_pred CCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEe
Confidence 65 3466788999999999999975 699999999999999999999999999999999999995 5589999
Q ss_pred eCCCcEEEEEccCCeeeEEeecCCcC-EEEEEEecCCCEEEEEe----CCCcEEEEEcCCCCcceEEEeecccC-ceE--
Q 001039 1023 SDDWTARMWSISRGTCDAVLACHAGP-VQCVEYSSSDRGIITGS----SDGLLRFWENDDAGGIKCVKNVTIHS-SAI-- 1094 (1179)
Q Consensus 1023 s~dg~I~iwd~~~~~~~~~~~~h~~~-V~~l~~spdg~~l~sgs----~Dg~I~iwd~~~~~~~~~~~~~~~h~-~~i-- 1094 (1179)
+.||+|++||+++++.+..+.+|.+. +..+.|.+++..+++++ .|+.|++||+++... .+.....+. ..+
T Consensus 187 s~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--p~~~~~~d~~~~~~~ 264 (493)
T PTZ00421 187 SKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--PYSTVDLDQSSALFI 264 (493)
T ss_pred cCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--ceeEeccCCCCceEE
Confidence 99999999999999999999888765 45778999888887654 478999999987432 232222222 222
Q ss_pred EEEecCCCEEEEEE-CCCcEEEEeCCCC
Q 001039 1095 LSINAGDHWLGIGA-ADNSMSLFHRPQE 1121 (1179)
Q Consensus 1095 ~sis~dg~~lasgs-~Dg~I~iwd~~~~ 1121 (1179)
..++++++++++|+ .||.|++||+.++
T Consensus 265 ~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 265 PFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 23478999999887 5999999999844
No 114
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=7.6e-23 Score=224.08 Aligned_cols=286 Identities=22% Similarity=0.318 Sum_probs=222.8
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCc-----eeEEEeccccccEEEEecCC
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGS-----ELRATLKGHTRTVRAINSDR 893 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~-----~~~~~l~~h~~~v~~~s~d~ 893 (1179)
+--.+.+|+..|.++++- |.|..|+|||.|.+|++||+..-.. ..+....+|......+++.|
T Consensus 159 hEi~l~hgtk~Vsal~~D------------p~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg 226 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVD------------PSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG 226 (641)
T ss_pred ceEeccCCceEEEEeeec------------CCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC
Confidence 445688999999999986 8999999999999999999763221 22334456777777889999
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEE------------eecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCeE-EE
Q 001039 894 GKVVSGSDDQSVLVWDKQTSQLLEE------------LKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTC-VA 958 (1179)
Q Consensus 894 ~~l~sgs~dg~I~iwd~~t~~~~~~------------~~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~~-~~ 958 (1179)
..|++.+.....+++|-...+.... -+||...++|.+|+ +.+.+++++.||++++||+.+.+. ..
T Consensus 227 ~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 227 DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred CeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 9999999999999999654433322 25799999999999 466799999999999999987542 22
Q ss_pred Ee-----ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEeecCCC--CeEEEEE--cCCEEEEEeCCC
Q 001039 959 TV-----GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ---MHKFLGHTK--WIRSIRM--DRDTVITGSDDW 1026 (1179)
Q Consensus 959 ~~-----~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~---~~~~~~~~~--~I~sl~~--~~~~l~sgs~dg 1026 (1179)
.+ .+..-.+++++|+++|++||+|+.||.|.+||.++... ...-..|.. .|+|++| ++++|++-+.|+
T Consensus 307 Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~ 386 (641)
T KOG0772|consen 307 VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD 386 (641)
T ss_pred EEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC
Confidence 22 23345789999999999999999999999999864322 222346666 8999999 577999999999
Q ss_pred cEEEEEccCC-eeeEEeecC--CcCEEEEEEecCCCEEEEEeC------CCcEEEEEcCCCCcceEEEeecccCceEEEE
Q 001039 1027 TARMWSISRG-TCDAVLACH--AGPVQCVEYSSSDRGIITGSS------DGLLRFWENDDAGGIKCVKNVTIHSSAILSI 1097 (1179)
Q Consensus 1027 ~I~iwd~~~~-~~~~~~~~h--~~~V~~l~~spdg~~l~sgs~------Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si 1097 (1179)
++++||++.. +++.+..+- .-+-+.++|||+.+.|++|+. .|++.+||..+ ...+..+...+..|..+
T Consensus 387 tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t---~d~v~ki~i~~aSvv~~ 463 (641)
T KOG0772|consen 387 TLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT---LDTVYKIDISTASVVRC 463 (641)
T ss_pred ceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc---eeeEEEecCCCceEEEE
Confidence 9999999875 445544432 345678999999999999863 57899999888 66676666666666544
Q ss_pred --ecCCCEEEEEECCCcEEEEeCC
Q 001039 1098 --NAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1098 --s~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
+|.-+.|.+|+.||++++|--+
T Consensus 464 ~WhpkLNQi~~gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 464 LWHPKLNQIFAGSGDGTAHVYYDP 487 (641)
T ss_pred eecchhhheeeecCCCceEEEECc
Confidence 6777789999999999998544
No 115
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=1.8e-22 Score=240.98 Aligned_cols=286 Identities=20% Similarity=0.289 Sum_probs=237.9
Q ss_pred ccCceEEEEeecccceeccccccCCCCEEEEEe--CCCcEEEEcCCCC----------CceeEEEeccccccEEEE--ec
Q 001039 826 HAGAITALHCVTKREVWDLVGDREDAGFFISGS--TDCLVKIWDPSLR----------GSELRATLKGHTRTVRAI--NS 891 (1179)
Q Consensus 826 H~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs--~Dg~I~lWd~~~~----------~~~~~~~l~~h~~~v~~~--s~ 891 (1179)
++..|.+|..+ |||..+|||+ .||.++||+.+.- -.+.+.....|.+.|.|+ ++
T Consensus 12 ~~~~IfSIdv~------------pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~ 79 (942)
T KOG0973|consen 12 NEKSIFSIDVH------------PDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP 79 (942)
T ss_pred CCeeEEEEEec------------CCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC
Confidence 44578999988 8999999999 8999999986411 123456677899999985 99
Q ss_pred CCCEEEEEeCCCcEEEEECCC------------------CeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCC
Q 001039 892 DRGKVVSGSDDQSVLVWDKQT------------------SQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVR 952 (1179)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t------------------~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~ 952 (1179)
||.+||+|++|+.|.||+... .+++..+.+|...|..++|+ ++.++++++.|++|.+||..
T Consensus 80 dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~ 159 (942)
T KOG0973|consen 80 DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAK 159 (942)
T ss_pred CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccc
Confidence 999999999999999998762 14677889999999999999 68899999999999999999
Q ss_pred CCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCC------CeEEEEEcCC--EEEEEe-
Q 001039 953 TDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTK------WIRSIRMDRD--TVITGS- 1023 (1179)
Q Consensus 953 ~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~------~I~sl~~~~~--~l~sgs- 1023 (1179)
+.+.+..+.+|.+.|..+.|+|-|+++|+-+.|++|++|++.+....+.+.++.. ....+.|+|+ +|++..
T Consensus 160 tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 160 TFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred cceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 9999999999999999999999999999999999999999888777777655432 4667788654 777653
Q ss_pred ---CCCcEEEEEccCCeeeEEeecCCcCEEEEEEecC-------------CC----EEEEEeCCCcEEEEEcCCCCcceE
Q 001039 1024 ---DDWTARMWSISRGTCDAVLACHAGPVQCVEYSSS-------------DR----GIITGSSDGLLRFWENDDAGGIKC 1083 (1179)
Q Consensus 1024 ---~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd-------------g~----~l~sgs~Dg~I~iwd~~~~~~~~~ 1083 (1179)
.-.++.|.+-.+.+.-..+.+|.+++.++.|+|. .. .+|+|+.|++|.||.....+..-.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~v 319 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFV 319 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhh
Confidence 3346888888888888899999999999999981 11 678999999999999877555555
Q ss_pred EEeecccCceEEEEecCCCEEEEEECCCcEEEEeCCCCCc
Q 001039 1084 VKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERL 1123 (1179)
Q Consensus 1084 ~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~ 1123 (1179)
++.+..+...-++++|||..|.++|.||+|.+.+.+.+.+
T Consensus 320 i~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 320 IHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred hhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 5555555545566689999999999999999999986655
No 116
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.8e-21 Score=201.38 Aligned_cols=281 Identities=15% Similarity=0.310 Sum_probs=222.4
Q ss_pred eEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccc--cEEEEecCCCEEE
Q 001039 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTR--TVRAINSDRGKVV 897 (1179)
Q Consensus 820 ~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~--~v~~~s~d~~~l~ 897 (1179)
.+.+..-.+.|+++.|+ .+|.++++++.|.++++||.. ......++..+.- .+.++....+.++
T Consensus 7 ak~f~~~~~~i~sl~fs------------~~G~~litss~dDsl~LYd~~--~g~~~~ti~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFS------------DDGLLLITSSEDDSLRLYDSL--SGKQVKTINSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred ccccccCCCceeEEEec------------CCCCEEEEecCCCeEEEEEcC--CCceeeEeecccccccEEEEecCCceEE
Confidence 34556677889999998 899999999999999999976 4555566655533 3446655666666
Q ss_pred EEeC--CCcEEEEECCCCeEEEEeecCCCcEEEEEEeC-CCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcC
Q 001039 898 SGSD--DQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS-GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDD 974 (1179)
Q Consensus 898 sgs~--dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp 974 (1179)
.++. |.+|+..++.+.+.++.+.||...|..++.++ ++.+++++.|++|++||++..++...+..... ..++|+|
T Consensus 73 ~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp 150 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDP 150 (311)
T ss_pred EccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECC
Confidence 6665 88999999999999999999999999999994 78999999999999999998888777654333 4578999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC--ceeEEee---cCCCCeEEEEE--cCCEEEEEeCCCcEEEEEccCCeeeEEeecCCc
Q 001039 975 STGILAAGGRDAVANIWDIRAG--RQMHKFL---GHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHAG 1047 (1179)
Q Consensus 975 ~~~~l~sgs~dg~I~iwD~~~~--~~~~~~~---~~~~~I~sl~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~ 1047 (1179)
+|-++|++...+.|++||+|.- .+-.++. +.....+.+.| +|+.++.++..+.+++.|.-+|....++..+..
T Consensus 151 ~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~ 230 (311)
T KOG1446|consen 151 EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPN 230 (311)
T ss_pred CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccC
Confidence 9999999998889999999864 2333332 33567778888 456899999999999999999999988887654
Q ss_pred CE---EEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecc-cCceEEEEecCCCEEEEEECCCcEEEEeCC
Q 001039 1048 PV---QCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTI-HSSAILSINAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1048 ~V---~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~-h~~~i~sis~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
.- -..+|+||++++++|+.||+|.+|+++++ ..+..+.+ +...+.++..+.++..-++.+..+.+|=..
T Consensus 231 ~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg---~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 231 AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETG---KKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCC---cEeeEecCCCCCCccccccCCceeeeeecCceEEEEecc
Confidence 33 57789999999999999999999999884 45555555 566666665555555555566788888654
No 117
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=4.1e-22 Score=206.03 Aligned_cols=268 Identities=22% Similarity=0.345 Sum_probs=209.3
Q ss_pred EecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEe
Q 001039 823 IRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGS 900 (1179)
Q Consensus 823 l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs 900 (1179)
-..-.+.|.+++||| ....++++||.||+||+|+++..+...-+....|.++|.+ ++.||..+++|+
T Consensus 23 ~~pP~DsIS~l~FSP-----------~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~ 91 (347)
T KOG0647|consen 23 PNPPEDSISALAFSP-----------QADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGG 91 (347)
T ss_pred CCCcccchheeEecc-----------ccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeec
Confidence 344578899999985 3677888999999999999985444444667789999985 588999999999
Q ss_pred CCCcEEEEECCCCeEEEEeecCCCcEEEEEEeC---CCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCC
Q 001039 901 DDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS---GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTG 977 (1179)
Q Consensus 901 ~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~ 977 (1179)
.|+.+++||+.+++ +..+..|.++|.++.|-. ...|++||+|.+|+.||.+....+.++. ..+.+.++.. -..
T Consensus 92 ~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv--~~p 167 (347)
T KOG0647|consen 92 CDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADV--LYP 167 (347)
T ss_pred cCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhc--cCc
Confidence 99999999999995 466778999999999983 3468999999999999999998888874 3455666554 345
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEE-eec-CCCCeEEEEE--cCCEEEEEeCCCcEEEEEccCC--eeeEEeecCCc----
Q 001039 978 ILAAGGRDAVANIWDIRAGRQMHK-FLG-HTKWIRSIRM--DRDTVITGSDDWTARMWSISRG--TCDAVLACHAG---- 1047 (1179)
Q Consensus 978 ~l~sgs~dg~I~iwD~~~~~~~~~-~~~-~~~~I~sl~~--~~~~l~sgs~dg~I~iwd~~~~--~~~~~~~~h~~---- 1047 (1179)
.++++..+..|.+|+++++....+ ... -.-.++|++. +.+..+.|+-+|.+.+..++.+ +.-.++++|..
T Consensus 168 m~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~ 247 (347)
T KOG0647|consen 168 MAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSV 247 (347)
T ss_pred eeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCC
Confidence 678888899999999987643322 211 2235667766 5667799999999999998876 44455667753
Q ss_pred -----CEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEE--EEecCCCEEEEEE
Q 001039 1048 -----PVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAIL--SINAGDHWLGIGA 1108 (1179)
Q Consensus 1048 -----~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~--sis~dg~~lasgs 1108 (1179)
.|++++|+|.-..|+|++.||+..+||-+. ...++....|..+|. +++.+|.++|.+.
T Consensus 248 ~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkda---r~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 248 NDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDA---RTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred CCceEEecceEeecccceEEEecCCceEEEecchh---hhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 478899999999999999999999999887 455566666777764 4567888877653
No 118
>PTZ00420 coronin; Provisional
Probab=99.90 E-value=1.8e-21 Score=232.17 Aligned_cols=223 Identities=13% Similarity=0.196 Sum_probs=178.7
Q ss_pred EEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCc--------eeEEeecCCCCeE
Q 001039 940 ASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS-TGILAAGGRDAVANIWDIRAGR--------QMHKFLGHTKWIR 1010 (1179)
Q Consensus 940 gs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~-~~~l~sgs~dg~I~iwD~~~~~--------~~~~~~~~~~~I~ 1010 (1179)
|+.++.|++|+......+..+.+|.+.|.+++|+|+ +++|++|+.||.|++||+.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566788999998888888889999999999999996 7899999999999999998642 3446789999999
Q ss_pred EEEEcCC---EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEee
Q 001039 1011 SIRMDRD---TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNV 1087 (1179)
Q Consensus 1011 sl~~~~~---~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~ 1087 (1179)
+++|+++ .+++++.||+|++||+++++....+. |...|.+++|+|+|.+|++++.|+.|++||+++ ...+..+
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs---g~~i~tl 205 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK---QEIASSF 205 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCC---CcEEEEE
Confidence 9999864 56799999999999999998877776 667899999999999999999999999999998 4556667
Q ss_pred cccCceEE-------EEecCCCEEEEEECCC----cEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcC
Q 001039 1088 TIHSSAIL-------SINAGDHWLGIGAADN----SMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDL 1156 (1179)
Q Consensus 1088 ~~h~~~i~-------sis~dg~~lasgs~Dg----~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fsp 1156 (1179)
.+|...+. .+++++.++++++.|+ .|++||+... +..+ .......+.+.+......+
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~--------~~pl----~~~~ld~~~~~L~p~~D~~ 273 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT--------TSAL----VTMSIDNASAPLIPHYDES 273 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC--------CCce----EEEEecCCccceEEeeeCC
Confidence 78876432 2347888999888774 7999998732 1111 1112333444444455566
Q ss_pred CCCEEEEEeCCCcEEEEECCCC
Q 001039 1157 ERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1157 dg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
+|.++++|+.|++|++|++.++
T Consensus 274 tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 274 TGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCCEEEEEECCCeEEEEEccCC
Confidence 7999999999999999999765
No 119
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.4e-22 Score=234.65 Aligned_cols=241 Identities=17% Similarity=0.313 Sum_probs=196.5
Q ss_pred EEec-cccccEEE--EecCCCEEEEEeCCCcEEEEECCC--------------------------------C--------
Q 001039 877 ATLK-GHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQT--------------------------------S-------- 913 (1179)
Q Consensus 877 ~~l~-~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t--------------------------------~-------- 913 (1179)
+.+. .|.+.|++ ||+||++||+||.||.|+||.+.. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 4455 89999997 599999999999999999997654 0
Q ss_pred --------------------eEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEc
Q 001039 914 --------------------QLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYD 973 (1179)
Q Consensus 914 --------------------~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s 973 (1179)
+++..+.||.+.|..+.|+.++.|++++.|.+|++|++...+|++.+ .|.+-|+|++|+
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFn 418 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFN 418 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEec
Confidence 13455678999999999999999999999999999999999999998 789999999999
Q ss_pred C-CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE--cCCEEEEEeCCCcEEEEEccCCeeeEEeec--C---
Q 001039 974 D-STGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLAC--H--- 1045 (1179)
Q Consensus 974 p-~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--h--- 1045 (1179)
| |.+++++|+-||.++||++...+.+.-. .-..-|+++++ +|+..+.|+.+|.+++|+....+......- |
T Consensus 419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 419 PVDDRYFISGSLDGKVRLWSISDKKVVDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred ccCCCcEeecccccceEEeecCcCeeEeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 9 8899999999999999999877665443 44478999998 566999999999999999988776554321 1
Q ss_pred ---CcCEEEEEEecCC-CEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceE-EEEecCCCEEEEEECCCcEEEEeCC
Q 001039 1046 ---AGPVQCVEYSSSD-RGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAI-LSINAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1046 ---~~~V~~l~~spdg-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i-~sis~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
...|+++.|.|.. ..+++.+.|..|+|+|.++......++.+......+ .+++.||++|++|++|..|++|+..
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 2279999998754 357788899999999997733333333333333333 4567899999999999999999974
No 120
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=9.9e-22 Score=203.82 Aligned_cols=295 Identities=17% Similarity=0.253 Sum_probs=209.9
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCc----eeEEEeccccccEEEEecCCC
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGS----ELRATLKGHTRTVRAINSDRG 894 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~----~~~~~l~~h~~~v~~~s~d~~ 894 (1179)
.+.+|+||.+.|++++|+ .||++|||++.|++|++|+++.-.. .+...+.........|+||-+
T Consensus 78 ~~~~LKgH~~~vt~~~Fs------------SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~ 145 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFS------------SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCK 145 (420)
T ss_pred hhhhhhccCCceeeeEEc------------CCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcc
Confidence 455789999999999998 8999999999999999999762111 122222222223335788876
Q ss_pred EEE-EEeCCCcEEEEECCCC---eEEE---------EeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEe
Q 001039 895 KVV-SGSDDQSVLVWDKQTS---QLLE---------ELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV 960 (1179)
Q Consensus 895 ~l~-sgs~dg~I~iwd~~t~---~~~~---------~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 960 (1179)
-++ ++-...++++|.+... .... --+.|...+..+-.. ++.++++++.|..|.+||++ |+.+..+
T Consensus 146 s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~i 224 (420)
T KOG2096|consen 146 SVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSI 224 (420)
T ss_pred eEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeee
Confidence 554 4445568899876432 1111 112344555555555 56789999999999999998 9999988
Q ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeE
Q 001039 961 GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDA 1040 (1179)
Q Consensus 961 ~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 1040 (1179)
......-...+.||+|+++++++..-.+++|.+-- ..||++ ..-..+.
T Consensus 225 dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f---------------------------~kdG~f-----qev~rvf 272 (420)
T KOG2096|consen 225 DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIF---------------------------TKDGTF-----QEVKRVF 272 (420)
T ss_pred ccccccccceeeCCCCcEEEEecCCCCceEEEEEe---------------------------ccCcch-----hhhhhhh
Confidence 77777778889999999999999888899997421 123332 1122345
Q ss_pred EeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCC----CcceEEEee----c--ccCceEEEEecCCCEEEEEECC
Q 001039 1041 VLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDA----GGIKCVKNV----T--IHSSAILSINAGDHWLGIGAAD 1110 (1179)
Q Consensus 1041 ~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~----~~~~~~~~~----~--~h~~~i~sis~dg~~lasgs~D 1110 (1179)
.+++|.+.|..++|+++...+++.|.||++++||++-. +....++.. . +...--++++|+|+.||.+..
T Consensus 273 ~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g- 351 (420)
T KOG2096|consen 273 SLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG- 351 (420)
T ss_pred eeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-
Confidence 67789999999999999999999999999999998641 111222221 0 111123677999999997654
Q ss_pred CcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001039 1111 NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1174 (1179)
Q Consensus 1111 g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWd 1174 (1179)
..++++... +|+... .....|...|++++|++||+++|||| |..+++..
T Consensus 352 s~l~~~~se---------~g~~~~-----~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 352 SDLKVFASE---------DGKDYP-----ELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred CceEEEEcc---------cCccch-----hHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 589999887 443222 12347889999999999999999998 66777765
No 121
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.6e-20 Score=185.77 Aligned_cols=281 Identities=21% Similarity=0.311 Sum_probs=228.9
Q ss_pred ccccEE--EEecCCCEEEEEeCCCcEEEEECC------CCe---------EEEEeecCCCcEEEEEEe-CCCEEEEEEcC
Q 001039 882 HTRTVR--AINSDRGKVVSGSDDQSVLVWDKQ------TSQ---------LLEELKGHDAQVSCVRML-SGERVLTASHD 943 (1179)
Q Consensus 882 h~~~v~--~~s~d~~~l~sgs~dg~I~iwd~~------t~~---------~~~~~~~h~~~V~~l~~s-~~~~l~sgs~d 943 (1179)
.+..|. +|+|.|...++|+...+.+|.-.. .+. ..+.-+.|.+.|.|.+|+ .|..+++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 344555 568999999999999999987432 211 122345689999999999 79999999999
Q ss_pred CeEEEEeCCCCeEE-----EEeccCCCcEEEEEEcC----CCCEEEEEe-CCCeEEEEeCCCCceeEEeecCCCCeEEE-
Q 001039 944 GTVKMWDVRTDTCV-----ATVGRCSSAVLCMEYDD----STGILAAGG-RDAVANIWDIRAGRQMHKFLGHTKWIRSI- 1012 (1179)
Q Consensus 944 g~I~iwd~~~~~~~-----~~~~~~~~~v~~l~~sp----~~~~l~sgs-~dg~I~iwD~~~~~~~~~~~~~~~~I~sl- 1012 (1179)
.+|++.-++...+. ..+.-|.+.|..++|-. .+.++++++ .|..|++-|..+|+..+.+.+|.+-|.++
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly 190 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY 190 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE
Confidence 99999877655432 23556889999999965 345666655 57789999999999999999999999887
Q ss_pred EEcCCEEEEEeCCCcEEEEEccCCeeeEEeec--C-----CcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEE
Q 001039 1013 RMDRDTVITGSDDWTARMWSISRGTCDAVLAC--H-----AGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVK 1085 (1179)
Q Consensus 1013 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--h-----~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~ 1085 (1179)
.|++-++++|+.|.+|++||++-..++.++.. | .+.|.+++..|.|+.|++|..|....+||++. .+.++
T Consensus 191 swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg---~r~iq 267 (350)
T KOG0641|consen 191 SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG---GRMIQ 267 (350)
T ss_pred EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC---Cceee
Confidence 57999999999999999999998888887652 2 35799999999999999999999999999998 57888
Q ss_pred eecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEE
Q 001039 1086 NVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICS 1163 (1179)
Q Consensus 1086 ~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Las 1163 (1179)
.+..|+..|.++ +|...++.+++.|..|++-|++..-. .. -.......|...+-.+.|+|..-.+++
T Consensus 268 ~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla-------~e----l~~~vv~ehkdk~i~~rwh~~d~sfis 336 (350)
T KOG0641|consen 268 RFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA-------HE----LPIMVVAEHKDKAIQCRWHPQDFSFIS 336 (350)
T ss_pred eeCCCccceeEEEeCCCceEEEEecccceEEEeecccchh-------hc----CceEEEEeccCceEEEEecCccceeee
Confidence 888999988776 89999999999999999999974311 11 122234578888889999999999999
Q ss_pred EeCCCcEEEEECC
Q 001039 1164 GGRNGLLRLWEAT 1176 (1179)
Q Consensus 1164 gs~Dg~I~vWdv~ 1176 (1179)
.+.|.++.+|-+.
T Consensus 337 ssadkt~tlwa~~ 349 (350)
T KOG0641|consen 337 SSADKTATLWALN 349 (350)
T ss_pred ccCcceEEEeccC
Confidence 9999999999764
No 122
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=4.7e-22 Score=217.95 Aligned_cols=280 Identities=18% Similarity=0.257 Sum_probs=215.5
Q ss_pred EEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeE----EEEe-ecCCCcEEEEEEe-CCCEEEEEEcCCeEEE
Q 001039 877 ATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQL----LEEL-KGHDAQVSCVRML-SGERVLTASHDGTVKM 948 (1179)
Q Consensus 877 ~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~----~~~~-~~h~~~V~~l~~s-~~~~l~sgs~dg~I~i 948 (1179)
..+++|+..|.++ .|.|..+++|+.|.+|++||+..... .+.+ ......|.++.|+ .++.|++.+.....++
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl 240 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL 240 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence 4678888888865 78999999999999999999875321 1222 2344578999999 6889999999999999
Q ss_pred EeCCCCeEEEE------------eccCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCce-eEEee-----cCCCCe
Q 001039 949 WDVRTDTCVAT------------VGRCSSAVLCMEYDDS-TGILAAGGRDAVANIWDIRAGRQ-MHKFL-----GHTKWI 1009 (1179)
Q Consensus 949 wd~~~~~~~~~------------~~~~~~~v~~l~~sp~-~~~l~sgs~dg~I~iwD~~~~~~-~~~~~-----~~~~~I 1009 (1179)
+|-...+.... .++|...++|.+|+|. ...+++++.||++++||+...+. ...++ +..-.+
T Consensus 241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPV 320 (641)
T ss_pred EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCc
Confidence 99654433322 2568888999999995 45788999999999999987543 22232 334478
Q ss_pred EEEEEc--CCEEEEEeCCCcEEEEEccCCee---eEEeecCCc--CEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcce
Q 001039 1010 RSIRMD--RDTVITGSDDWTARMWSISRGTC---DAVLACHAG--PVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIK 1082 (1179)
Q Consensus 1010 ~sl~~~--~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~h~~--~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~ 1082 (1179)
++++|+ +..+|+|+.||.|.+|+..+... ...-.+|.. .|+|+.||+||++|++-+.|+++++||++... +
T Consensus 321 tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k--k 398 (641)
T KOG0772|consen 321 TSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK--K 398 (641)
T ss_pred eeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc--c
Confidence 889995 45899999999999999755432 233456776 89999999999999999999999999999754 3
Q ss_pred EEEeecc----cCceEEEEecCCCEEEEEEC------CCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEE
Q 001039 1083 CVKNVTI----HSSAILSINAGDHWLGIGAA------DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCI 1152 (1179)
Q Consensus 1083 ~~~~~~~----h~~~i~sis~dg~~lasgs~------Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v 1152 (1179)
++....+ ....-.++||+.++|++|+. .|++.+||..+- +.+..+.-....|..+
T Consensus 399 pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---------------d~v~ki~i~~aSvv~~ 463 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---------------DTVYKIDISTASVVRC 463 (641)
T ss_pred chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---------------eeEEEecCCCceEEEE
Confidence 3333222 23344778999999999864 578999997632 4455555557789999
Q ss_pred EEcCCCCEEEEEeCCCcEEEE
Q 001039 1153 ASDLERKRICSGGRNGLLRLW 1173 (1179)
Q Consensus 1153 ~fspdg~~Lasgs~Dg~I~vW 1173 (1179)
.|+|.-+.|..|+.||+++|+
T Consensus 464 ~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 464 LWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred eecchhhheeeecCCCceEEE
Confidence 999999999999999999987
No 123
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=3.3e-21 Score=218.57 Aligned_cols=363 Identities=19% Similarity=0.311 Sum_probs=276.8
Q ss_pred EEccCCCceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCE
Q 001039 775 MFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGF 853 (1179)
Q Consensus 775 ~fSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~ 853 (1179)
.|.|.+ .+|.|... |-+||-.... ....+.||.++|+|+.|-|.++ -..+
T Consensus 21 sw~~~~-~vafGa~~~Iav~dp~k~~-------------------i~t~l~GH~a~VnC~~~l~~s~---------~~a~ 71 (764)
T KOG1063|consen 21 SWGPGG-LVAFGAGPAIAVADPEKIL-------------------IVTTLDGHVARVNCVHWLPTSE---------IVAE 71 (764)
T ss_pred cccccc-eEEecCCceEEEeCcccce-------------------eEEeccCCccceEEEEEccccc---------ccce
Confidence 666665 56666666 9999977543 6778999999999999985332 1128
Q ss_pred EEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCe--EEEEeecCCCcE--EEE
Q 001039 854 FISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQ--LLEELKGHDAQV--SCV 929 (1179)
Q Consensus 854 Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~--~~~~~~~h~~~V--~~l 929 (1179)
+++|+.||.|++|.++......+..+++|...+.|+........+.+.|+++.+||.+..+ +...+.-..+.+ .|+
T Consensus 72 ~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL 151 (764)
T KOG1063|consen 72 MVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCL 151 (764)
T ss_pred EEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHH
Confidence 9999999999999988556667788999999999987666555555889999999996555 223333222222 233
Q ss_pred EEe--CCCE-EEEEEcCCeEEEEeCCCC--eEEEEeccCCCcEEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCc----
Q 001039 930 RML--SGER-VLTASHDGTVKMWDVRTD--TCVATVGRCSSAVLCMEYDDSTG---ILAAGGRDAVANIWDIRAGR---- 997 (1179)
Q Consensus 930 ~~s--~~~~-l~sgs~dg~I~iwd~~~~--~~~~~~~~~~~~v~~l~~sp~~~---~l~sgs~dg~I~iwD~~~~~---- 997 (1179)
+.. ++.. ++.|+.+..|.++.-.++ +.+..+.+|.+.|.+++|...+. +++++++|..|++|.+.-+.
T Consensus 152 ~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~ 231 (764)
T KOG1063|consen 152 AALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDS 231 (764)
T ss_pred hhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccc
Confidence 333 2333 456677777888866544 45667889999999999987544 78899999999999875322
Q ss_pred -----------------eeEE----------eecCCCCeEEEEEcCC--EEEEEeCCCcEEEEEccCCe--e-----eEE
Q 001039 998 -----------------QMHK----------FLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGT--C-----DAV 1041 (1179)
Q Consensus 998 -----------------~~~~----------~~~~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~--~-----~~~ 1041 (1179)
...+ +.||.++|.++.|++. .|++++.|.++.+|.-.+.. - +..
T Consensus 232 ~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe 311 (764)
T KOG1063|consen 232 NEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGE 311 (764)
T ss_pred cccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeec
Confidence 1111 2489999999999776 79999999999999876542 2 222
Q ss_pred eecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCC
Q 001039 1042 LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1042 ~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
+.+..+...+..|+|+++.+++-+..|..++|...+.........+.||...|.++ +|.|.++.+.|.|.+-|+|-.-
T Consensus 312 ~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 312 VGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred ccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc
Confidence 33456678999999999999999999999999955555556666778999999887 5679999999999999999754
Q ss_pred CCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001039 1120 QERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1120 ~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
|++ ..|..+..++.|...++|++|-+....+++|.+...+|+++...
T Consensus 392 ----------g~q-~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk 438 (764)
T KOG1063|consen 392 ----------GRQ-QEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPK 438 (764)
T ss_pred ----------ccc-cceeeecccccccccceeeehccCCceeeecccceeeeeecCcH
Confidence 222 23888899999999999999998777889999999999998753
No 124
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.2e-21 Score=201.85 Aligned_cols=265 Identities=15% Similarity=0.279 Sum_probs=210.5
Q ss_pred cccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEe
Q 001039 883 TRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATV 960 (1179)
Q Consensus 883 ~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 960 (1179)
...|.+ +++.++.|++++.||++++||+........++ |..++.+++|.+...+++|+.||.|+.+|+.++... .+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~-~i 90 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNED-QI 90 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCceEEEeccCceEEEEEecCCcce-ee
Confidence 344553 57888999999999999999999886655655 899999999999999999999999999999988754 45
Q ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeE
Q 001039 961 GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDA 1040 (1179)
Q Consensus 961 ~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 1040 (1179)
..|...|.|+.+++....+++|++|++|++||.+.......+ .....|.++...++.|++|+.|..|.+||+++.....
T Consensus 91 gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~-d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~ 169 (323)
T KOG1036|consen 91 GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF-DQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPF 169 (323)
T ss_pred ccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc-ccCceEEEEeccCCEEEEeecCceEEEEEcccccchh
Confidence 689999999999998889999999999999999985555554 3344899999999999999999999999999865443
Q ss_pred Eee--cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc-------ceEEEeecccCc---eE--EEEecCCCEEEE
Q 001039 1041 VLA--CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGG-------IKCVKNVTIHSS---AI--LSINAGDHWLGI 1106 (1179)
Q Consensus 1041 ~~~--~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~-------~~~~~~~~~h~~---~i--~sis~dg~~las 1106 (1179)
... .-.-.+.|+++-|++.-.++++-||.|.+=.++.... .+|......... +| ++++|-...+|+
T Consensus 170 q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaT 249 (323)
T KOG1036|consen 170 QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFAT 249 (323)
T ss_pred hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEe
Confidence 222 2345789999999999999999999998877766411 122222222122 23 445778889999
Q ss_pred EECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEe
Q 001039 1107 GAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGG 1165 (1179)
Q Consensus 1107 gs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs 1165 (1179)
|+.||.|.+||+.++ +.+..+..-...|.+++|+.||..||.|+
T Consensus 250 gGsDG~V~~Wd~~~r---------------Krl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 250 GGSDGIVNIWDLFNR---------------KRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred cCCCceEEEccCcch---------------hhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 999999999999854 23344445567799999999999999986
No 125
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=1.1e-21 Score=213.97 Aligned_cols=247 Identities=22% Similarity=0.411 Sum_probs=204.4
Q ss_pred eEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCce--------eEEEeccccccEEEE--
Q 001039 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSE--------LRATLKGHTRTVRAI-- 889 (1179)
Q Consensus 820 ~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~--------~~~~l~~h~~~v~~~-- 889 (1179)
+...--|.+.|+.+.+.| .+..++|+++..+.|.|||....... ....+.||...-.++
T Consensus 117 i~~~i~h~gEVnRaRymP-----------Qnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsW 185 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMP-----------QNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSW 185 (422)
T ss_pred EEEeccCCccchhhhhCC-----------CCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccc
Confidence 334445999999999986 67788899999999999997532222 223788998854444
Q ss_pred ec-CCCEEEEEeCCCcEEEEECCCCe-------EEEEeecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCC--CCeEE
Q 001039 890 NS-DRGKVVSGSDDQSVLVWDKQTSQ-------LLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVR--TDTCV 957 (1179)
Q Consensus 890 s~-d~~~l~sgs~dg~I~iwd~~t~~-------~~~~~~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~--~~~~~ 957 (1179)
++ ....+++|+.|++|++||+.... ....+.+|...|..++|+ +.+.+++++.|+.+.|||++ +.++.
T Consensus 186 n~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 186 NRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred ccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCc
Confidence 33 45689999999999999986532 345788999999999999 67889999999999999999 56667
Q ss_pred EEeccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-ceeEEeecCCCCeEEEEEcCC---EEEEEeCCCcEEEEE
Q 001039 958 ATVGRCSSAVLCMEYDD-STGILAAGGRDAVANIWDIRAG-RQMHKFLGHTKWIRSIRMDRD---TVITGSDDWTARMWS 1032 (1179)
Q Consensus 958 ~~~~~~~~~v~~l~~sp-~~~~l~sgs~dg~I~iwD~~~~-~~~~~~~~~~~~I~sl~~~~~---~l~sgs~dg~I~iwd 1032 (1179)
.....|.+.|.|++|+| ++..||+|+.|++|.+||+|+. +++.++.+|...|.++.|+|. .+++++.|+.+.+||
T Consensus 266 ~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD 345 (422)
T ss_pred ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence 77789999999999999 6678899999999999999985 568889999999999999875 899999999999999
Q ss_pred ccCC--------------eeeEEeecCCcCEEEEEEecCCCE-EEEEeCCCcEEEEEcCC
Q 001039 1033 ISRG--------------TCDAVLACHAGPVQCVEYSSSDRG-IITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1033 ~~~~--------------~~~~~~~~h~~~V~~l~~spdg~~-l~sgs~Dg~I~iwd~~~ 1077 (1179)
+..- +.+..-.||...|..+.|+|+..+ +++.+.|+.+.||.+..
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 8652 223455689999999999998876 56788999999999874
No 126
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=3.2e-21 Score=199.45 Aligned_cols=261 Identities=16% Similarity=0.276 Sum_probs=207.2
Q ss_pred EEEEec-CCCEEEEEeCCCcEEEEECCC-CeEE-EEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEec
Q 001039 886 VRAINS-DRGKVVSGSDDQSVLVWDKQT-SQLL-EELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVG 961 (1179)
Q Consensus 886 v~~~s~-d~~~l~sgs~dg~I~iwd~~t-~~~~-~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 961 (1179)
..+||| ....+++|+.||+|++|+++. |..+ +....|.++|.+++|+ +|..+++|+.|+.+++||+.+++ ...+.
T Consensus 32 ~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~ 110 (347)
T KOG0647|consen 32 ALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVA 110 (347)
T ss_pred eeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeee
Confidence 346788 556677999999999999987 3433 3445789999999999 78999999999999999999995 55667
Q ss_pred cCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeee
Q 001039 962 RCSSAVLCMEYDDSTG--ILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCD 1039 (1179)
Q Consensus 962 ~~~~~v~~l~~sp~~~--~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~ 1039 (1179)
.|..+|.++.|-+... .|++|+.|.+|+.||+|...++.++. -...+.++..-..+++++..++.|.+|+++++...
T Consensus 111 ~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te 189 (347)
T KOG0647|consen 111 AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVLYPMAVVATAERHIAVYNLENPPTE 189 (347)
T ss_pred ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhccCceeEEEecCCcEEEEEcCCCcch
Confidence 8999999999988666 89999999999999999999988874 34567787777779999999999999999876432
Q ss_pred EE-e-ecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccC------ceEEE-----EecCCCEEEE
Q 001039 1040 AV-L-ACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHS------SAILS-----INAGDHWLGI 1106 (1179)
Q Consensus 1040 ~~-~-~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~------~~i~s-----is~dg~~las 1106 (1179)
.. . ..-.-.++|++..+|....+.|+-+|.+-|..++.+.. +.-..++-|. ..|++ ++|.-..|++
T Consensus 190 ~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvT 268 (347)
T KOG0647|consen 190 FKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVT 268 (347)
T ss_pred hhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeecccceEEE
Confidence 22 1 12334688999999998889999999999999987432 2222233333 22444 3688899999
Q ss_pred EECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEE
Q 001039 1107 GAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSG 1164 (1179)
Q Consensus 1107 gs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasg 1164 (1179)
++.||++..||-..+ ..+.+...|..+|+|.+|+.+|.++|-+
T Consensus 269 aGsDGtf~FWDkdar---------------~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 269 AGSDGTFSFWDKDAR---------------TKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ecCCceEEEecchhh---------------hhhhccCcCCCccceeEecCCCCEEEEE
Confidence 999999999997633 2344556789999999999999998866
No 127
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=2.3e-21 Score=199.11 Aligned_cols=280 Identities=23% Similarity=0.372 Sum_probs=218.0
Q ss_pred ccccccEEEEe---cCCCEEEEEeCCCcEEEEECCCCeE----------EE-----EeecCCCcEEEEEEe--CCCEEEE
Q 001039 880 KGHTRTVRAIN---SDRGKVVSGSDDQSVLVWDKQTSQL----------LE-----ELKGHDAQVSCVRML--SGERVLT 939 (1179)
Q Consensus 880 ~~h~~~v~~~s---~d~~~l~sgs~dg~I~iwd~~t~~~----------~~-----~~~~h~~~V~~l~~s--~~~~l~s 939 (1179)
..|.+.|+++. ..|+++++|+.||.|.+||++.... +. .-.+|.-.|..+.|- +..++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45778888764 4689999999999999999976431 11 114677889998887 6788999
Q ss_pred EEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC
Q 001039 940 ASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDD---STGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR 1016 (1179)
Q Consensus 940 gs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp---~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~ 1016 (1179)
++.|.++++||.++.+....+ ...+.|.+-+++| ...++|+|..+-.|++.|+.+|...+.+.||...|.++.|++
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 999999999999998887777 4567788888888 345788888999999999999999999999999999999987
Q ss_pred C---EEEEEeCCCcEEEEEccCC-eeeEE--------------eecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 001039 1017 D---TVITGSDDWTARMWSISRG-TCDAV--------------LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDA 1078 (1179)
Q Consensus 1017 ~---~l~sgs~dg~I~iwd~~~~-~~~~~--------------~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~ 1078 (1179)
. .|++|+.||.|++||++.. .+... -..|.+.|++++|+.+|.++++++.|..+++|+..++
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 6 7999999999999999764 23222 2357788999999999999999999999999999886
Q ss_pred CcceEEEeecccCceE-EE--E-ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEE
Q 001039 1079 GGIKCVKNVTIHSSAI-LS--I-NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIAS 1154 (1179)
Q Consensus 1079 ~~~~~~~~~~~h~~~i-~s--i-s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~f 1154 (1179)
.....-.....|+..+ .+ + +.+...++---.|+.+.++++- .| ..++.+..|...|.|.++
T Consensus 279 ~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~---------sg------s~ir~l~~h~k~i~c~~~ 343 (397)
T KOG4283|consen 279 RNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLL---------EG------SFVRRLSTHLKRINCAAY 343 (397)
T ss_pred cccccccccccccccccceEEEeecccceEEEEecCCeEEEEEcc---------Cc------eEEEeeecccceeeEEee
Confidence 4221111111111111 11 1 3334444444456888888876 33 556677788889999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEC
Q 001039 1155 DLERKRICSGGRNGLLRLWEA 1175 (1179)
Q Consensus 1155 spdg~~Lasgs~Dg~I~vWdv 1175 (1179)
.|+=+...+|+.|+.|..|-+
T Consensus 344 ~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 344 RPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCchhhhhccccCCccccccc
Confidence 999999999999999999965
No 128
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4.7e-22 Score=199.74 Aligned_cols=252 Identities=23% Similarity=0.312 Sum_probs=204.1
Q ss_pred EEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCc-eeEEEeccccccEEEE---ec-CCCE
Q 001039 821 RIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGS-ELRATLKGHTRTVRAI---NS-DRGK 895 (1179)
Q Consensus 821 ~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~-~~~~~l~~h~~~v~~~---s~-d~~~ 895 (1179)
.+-.+|++.|..+... -.|+.|||++.|++|+|+.+..++. .++..+.||.++|..+ +| .|..
T Consensus 5 ~idt~H~D~IHda~lD------------yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~i 72 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLD------------YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTI 72 (299)
T ss_pred ehhhhhhhhhhHhhhh------------hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcE
Confidence 3455788888777653 5699999999999999999986665 7888999999999965 33 6899
Q ss_pred EEEEeCCCcEEEEECCCCeE--EEEeecCCCcEEEEEEeC---CCEEEEEEcCCeEEEEeCCCC-e--EEEEeccCCCcE
Q 001039 896 VVSGSDDQSVLVWDKQTSQL--LEELKGHDAQVSCVRMLS---GERVLTASHDGTVKMWDVRTD-T--CVATVGRCSSAV 967 (1179)
Q Consensus 896 l~sgs~dg~I~iwd~~t~~~--~~~~~~h~~~V~~l~~s~---~~~l~sgs~dg~I~iwd~~~~-~--~~~~~~~~~~~v 967 (1179)
|++++.||.|.||.-++|+- ......|...|++++|.+ |-.|++++.||.|.+.+.++. . ..+....|.-.|
T Consensus 73 LAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gv 152 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGV 152 (299)
T ss_pred eeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccc
Confidence 99999999999999888743 345678999999999984 556999999999999998765 2 223345788999
Q ss_pred EEEEEcCC---C-----------CEEEEEeCCCeEEEEeCCCCc--eeEEeecCCCCeEEEEEcCC------EEEEEeCC
Q 001039 968 LCMEYDDS---T-----------GILAAGGRDAVANIWDIRAGR--QMHKFLGHTKWIRSIRMDRD------TVITGSDD 1025 (1179)
Q Consensus 968 ~~l~~sp~---~-----------~~l~sgs~dg~I~iwD~~~~~--~~~~~~~~~~~I~sl~~~~~------~l~sgs~d 1025 (1179)
++++|.|. | +.|++|+.|..|+||+..+++ .-.++.+|.+.|+.++|.|. .+++++.|
T Consensus 153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD 232 (299)
T KOG1332|consen 153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD 232 (299)
T ss_pred ceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCC
Confidence 99999985 4 569999999999999998763 33458899999999999764 79999999
Q ss_pred CcEEEEEccCCe---eeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEE
Q 001039 1026 WTARMWSISRGT---CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCV 1084 (1179)
Q Consensus 1026 g~I~iwd~~~~~---~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~ 1084 (1179)
|++.||..+... ....+......++.+.||..|+.|+.++.|+.|.+|.-+..++..++
T Consensus 233 g~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v 294 (299)
T KOG1332|consen 233 GTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEV 294 (299)
T ss_pred CcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEc
Confidence 999999876321 12223345678999999999999999999999999987665544443
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.8e-21 Score=209.02 Aligned_cols=271 Identities=17% Similarity=0.293 Sum_probs=210.1
Q ss_pred CcEEEEECCCCeEEEEeecC-CCcEEEEEEeCCCEEEEEE-cCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEE
Q 001039 903 QSVLVWDKQTSQLLEELKGH-DAQVSCVRMLSGERVLTAS-HDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILA 980 (1179)
Q Consensus 903 g~I~iwd~~t~~~~~~~~~h-~~~V~~l~~s~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~ 980 (1179)
.++.+||+++|....++++. ...-.++....+.+++++. ....+.+|.+.............++|.+++-+|+|.+++
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ 97 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLL 97 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEE
Confidence 45999999999999998876 3333333333556666655 455789999876555544445578899999999999999
Q ss_pred EEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEc--CCEEEEEeCCCcEEEEEcc---------CCeeeEEeecCCcCE
Q 001039 981 AGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSIS---------RGTCDAVLACHAGPV 1049 (1179)
Q Consensus 981 sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~--~~~l~sgs~dg~I~iwd~~---------~~~~~~~~~~h~~~V 1049 (1179)
.|+..|.|++|.+.+|+.+..+.+|-..|+++.|+ +.++++|+.||.|.+|++. +-++...+..|.-+|
T Consensus 98 ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsI 177 (476)
T KOG0646|consen 98 AGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSI 177 (476)
T ss_pred eecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCccee
Confidence 99999999999999999999999999999999994 5599999999999999863 245678889999999
Q ss_pred EEEEEecC--CCEEEEEeCCCcEEEEEcCCCCcceEEEeecc-cCceEEEEecCCCEEEEEECCCcEEEEeCCCCC--cC
Q 001039 1050 QCVEYSSS--DRGIITGSSDGLLRFWENDDAGGIKCVKNVTI-HSSAILSINAGDHWLGIGAADNSMSLFHRPQER--LG 1124 (1179)
Q Consensus 1050 ~~l~~spd--g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~-h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~--~~ 1124 (1179)
+.+...+. ..+++|+|.|.++++||+..+ ..+.++.. ..-..+.++|.++.+.+|+.+|.|.+.++..-. ..
T Consensus 178 TDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~ 254 (476)
T KOG0646|consen 178 TDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSA 254 (476)
T ss_pred EEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccc
Confidence 99988765 467999999999999999984 44444332 222334558999999999999999998876422 00
Q ss_pred cccCCCCccccceeeeecCCCcc--cEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001039 1125 GFSGTGSKMSGWQLYRTPQKTVA--VVRCIASDLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1125 ~~~~~g~~~~~~~~~~~~~~h~~--~V~~v~fspdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
.+...+.. ........+.+|.+ .|+|++.+-||..|++|+.||.|+|||+.+
T Consensus 255 ~v~~k~~~-~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 255 GVNQKGRH-EENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred cccccccc-cccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 00000000 11144556779988 999999999999999999999999999864
No 130
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.1e-20 Score=196.68 Aligned_cols=260 Identities=17% Similarity=0.234 Sum_probs=213.7
Q ss_pred cceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecccc
Q 001039 769 RSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVG 846 (1179)
Q Consensus 769 ~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~ 846 (1179)
..|..+.|+|.++.|+.++.| +++||+...+ ++..-.|..++.+++|.
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~--------------------l~~~~~~~~plL~c~F~---------- 63 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS--------------------LKLKFKHGAPLLDCAFA---------- 63 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchh--------------------hhhheecCCceeeeecc----------
Confidence 678889999999999888898 9999998654 22334589999999995
Q ss_pred ccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCC
Q 001039 847 DREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDA 924 (1179)
Q Consensus 847 ~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~ 924 (1179)
|...+++|+.||.|+.+|++.... ..+..|..++.|+ ++..+.+++||.|++|++||.+.......+.. ..
T Consensus 64 ---d~~~~~~G~~dg~vr~~Dln~~~~---~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~k 136 (323)
T KOG1036|consen 64 ---DESTIVTGGLDGQVRRYDLNTGNE---DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GK 136 (323)
T ss_pred ---CCceEEEeccCceEEEEEecCCcc---eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-Cc
Confidence 578899999999999999873332 4567799999988 45688999999999999999997666666653 34
Q ss_pred cEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEe--ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ce
Q 001039 925 QVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATV--GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG----RQ 998 (1179)
Q Consensus 925 ~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~--~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~----~~ 998 (1179)
.|.++... ++.|++|+.|..|.+||+++.....+. ...+..+.|+++-|++.-.++++-||.|.+=.+... +.
T Consensus 137 kVy~~~v~-g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~sk 215 (323)
T KOG1036|consen 137 KVYCMDVS-GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSK 215 (323)
T ss_pred eEEEEecc-CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhh
Confidence 78887654 778999999999999999987654332 234668999999998888999999999988777665 33
Q ss_pred eEEeecCCC---------CeEEEEEcCC--EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeC
Q 001039 999 MHKFLGHTK---------WIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSS 1066 (1179)
Q Consensus 999 ~~~~~~~~~---------~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~ 1066 (1179)
...++.|.. +|++++|++- .++||+.||.|.+||+.+.+.+..+......|.+++|+.+|..||+++.
T Consensus 216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 344555542 7889999875 8999999999999999999999999888888999999999999999874
No 131
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.5e-21 Score=209.29 Aligned_cols=283 Identities=16% Similarity=0.273 Sum_probs=220.7
Q ss_pred EeCC-CcEEEEcCCCCCceeEEEeccccccEE-EE-ecCCCEEEEEeC-CCcEEEEECCCCeEEEEeecCCCcEEEEEEe
Q 001039 857 GSTD-CLVKIWDPSLRGSELRATLKGHTRTVR-AI-NSDRGKVVSGSD-DQSVLVWDKQTSQLLEELKGHDAQVSCVRML 932 (1179)
Q Consensus 857 gs~D-g~I~lWd~~~~~~~~~~~l~~h~~~v~-~~-s~d~~~l~sgs~-dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s 932 (1179)
++.| .++.+||+.+ +....++++...... +. .-.+.+++++.. ...+.+|.+...........-.++|.+++-+
T Consensus 13 sS~d~~~~~~~dl~T--Gt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRT--GTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS 90 (476)
T ss_pred cCCCCcceeEEecCC--CceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence 3444 4599999873 333345555422111 12 223467776653 4579999987665544333456789999888
Q ss_pred C-CCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC---------CCceeEEe
Q 001039 933 S-GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR---------AGRQMHKF 1002 (1179)
Q Consensus 933 ~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~---------~~~~~~~~ 1002 (1179)
+ |.+++.|+..|.+++|.+.+|..+..+..|-..|+|+.|+.||.++++|+.||.|.+|++. +.++.+.+
T Consensus 91 n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f 170 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF 170 (476)
T ss_pred CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee
Confidence 4 6666666699999999999999999999999999999999999999999999999999864 34678889
Q ss_pred ecCCCCeEEEEEcC----CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 001039 1003 LGHTKWIRSIRMDR----DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDA 1078 (1179)
Q Consensus 1003 ~~~~~~I~sl~~~~----~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~ 1078 (1179)
..|.-+|+++.... .+++++|.|.++++||+..|..+.++. ....+.+++.+|-++.+.+|+.+|.|.+.++...
T Consensus 171 ~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 171 SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKL 249 (476)
T ss_pred ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeeehhcC
Confidence 99999999999843 289999999999999999999888876 6788999999999999999999999999887653
Q ss_pred C-------------cceEEEeecccCc--eEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeee
Q 001039 1079 G-------------GIKCVKNVTIHSS--AILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRT 1141 (1179)
Q Consensus 1079 ~-------------~~~~~~~~~~h~~--~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~ 1141 (1179)
. ....+..+.+|.. .|+++ +.||.+|++|+.||.++|||+.+. +++++
T Consensus 250 ~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~---------------Q~iRt 314 (476)
T KOG0646|consen 250 SGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK---------------QCIRT 314 (476)
T ss_pred CcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH---------------HHHHH
Confidence 2 1235566778887 77665 799999999999999999999855 45555
Q ss_pred cCCCcccEEEEEEcCC
Q 001039 1142 PQKTVAVVRCIASDLE 1157 (1179)
Q Consensus 1142 ~~~h~~~V~~v~fspd 1157 (1179)
.....++|+.+.+.|-
T Consensus 315 l~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 315 LQTSKGPVTNLQINPL 330 (476)
T ss_pred HhhhccccceeEeecc
Confidence 5555667777777543
No 132
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.87 E-value=4.8e-21 Score=209.11 Aligned_cols=255 Identities=18% Similarity=0.294 Sum_probs=203.4
Q ss_pred cCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCeE----------EEEeccCCCcEEEEEEcCC-CCEEEEEeCCCe
Q 001039 921 GHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTC----------VATVGRCSSAVLCMEYDDS-TGILAAGGRDAV 987 (1179)
Q Consensus 921 ~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~~----------~~~~~~~~~~v~~l~~sp~-~~~l~sgs~dg~ 987 (1179)
.|.+.|+.+.+. +...+++++..+.|.|||..+... -..+.+|...-.+++|++. ...+++|+.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 488889888887 466788889999999999865321 1256678777788999984 457889999999
Q ss_pred EEEEeCCCCc-------eeEEeecCCCCeEEEEEc---CCEEEEEeCCCcEEEEEcc--CCeeeEEeecCCcCEEEEEEe
Q 001039 988 ANIWDIRAGR-------QMHKFLGHTKWIRSIRMD---RDTVITGSDDWTARMWSIS--RGTCDAVLACHAGPVQCVEYS 1055 (1179)
Q Consensus 988 I~iwD~~~~~-------~~~~~~~~~~~I~sl~~~---~~~l~sgs~dg~I~iwd~~--~~~~~~~~~~h~~~V~~l~~s 1055 (1179)
|.+||+.... +...+.+|...|..++|+ .+.+++++.|+.+.|||++ +.++.....+|.+.|+|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 9999997532 345678999999999995 4599999999999999999 566677788999999999999
Q ss_pred cC-CCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ec-CCCEEEEEECCCcEEEEeCCCCCcCcccCCCC
Q 001039 1056 SS-DRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NA-GDHWLGIGAADNSMSLFHRPQERLGGFSGTGS 1131 (1179)
Q Consensus 1056 pd-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~ 1131 (1179)
|- +..||+||.|++|.+||+++.. .++..+.+|...|..+ +| ....||+++.|+.+.|||+..-.-.....++.
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~ 359 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLN--KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE 359 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcc--cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc
Confidence 95 5668899999999999999854 4788899999999888 55 45789999999999999997421110000111
Q ss_pred ccccceeeeecCCCcccEEEEEEcCCCCE-EEEEeCCCcEEEEECCCC
Q 001039 1132 KMSGWQLYRTPQKTVAVVRCIASDLERKR-ICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1132 ~~~~~~~~~~~~~h~~~V~~v~fspdg~~-Lasgs~Dg~I~vWdv~tg 1178 (1179)
-..-+++....||.+.|..+.|+|...+ |+|+++|+.+.||+....
T Consensus 360 -dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 360 -DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred -cCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 1122667778899999999999998765 788899999999998743
No 133
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.7e-20 Score=217.66 Aligned_cols=286 Identities=16% Similarity=0.205 Sum_probs=226.2
Q ss_pred ecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCC
Q 001039 824 RGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQ 903 (1179)
Q Consensus 824 ~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg 903 (1179)
.+|++.-+.|+|. ++|++|++++.||.|++|+......++ .++.-+...|.++..+++++++|+.++
T Consensus 10 yaht~G~t~i~~d------------~~gefi~tcgsdg~ir~~~~~sd~e~P-~ti~~~g~~v~~ia~~s~~f~~~s~~~ 76 (933)
T KOG1274|consen 10 YAHTGGLTLICYD------------PDGEFICTCGSDGDIRKWKTNSDEEEP-ETIDISGELVSSIACYSNHFLTGSEQN 76 (933)
T ss_pred hhccCceEEEEEc------------CCCCEEEEecCCCceEEeecCCcccCC-chhhccCceeEEEeecccceEEeeccc
Confidence 4789999999997 899999999999999999965332222 334448888999999999999999999
Q ss_pred cEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE
Q 001039 904 SVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAG 982 (1179)
Q Consensus 904 ~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sg 982 (1179)
+|.+|...+++.-..+....-++.+++++ +|++++.||.|-.|++.+..+......+.+|..+|.++.|+|++++||+.
T Consensus 77 tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvs 156 (933)
T KOG1274|consen 77 TVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVS 156 (933)
T ss_pred eEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEE
Confidence 99999999887766666667789999999 89999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEE
Q 001039 983 GRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGII 1062 (1179)
Q Consensus 983 s~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 1062 (1179)
+.||.|++||+.++.....+.+-.. ..+... ...+..++|+|+|..++
T Consensus 157 s~dG~v~iw~~~~~~~~~tl~~v~k----------------------~n~~~~----------s~i~~~~aW~Pk~g~la 204 (933)
T KOG1274|consen 157 SCDGKVQIWDLQDGILSKTLTGVDK----------------------DNEFIL----------SRICTRLAWHPKGGTLA 204 (933)
T ss_pred ecCceEEEEEcccchhhhhcccCCc----------------------cccccc----------cceeeeeeecCCCCeEE
Confidence 9999999999998877666532211 111100 34567789999999999
Q ss_pred EEeCCCcEEEEEcCCCCcceEEEeecccC-ceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeee
Q 001039 1063 TGSSDGLLRFWENDDAGGIKCVKNVTIHS-SAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRT 1141 (1179)
Q Consensus 1063 sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~-~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~ 1141 (1179)
..+.|+.|++|+..+......+..-..++ -.++.++|+|+|||+++.||.|.|||+++..
T Consensus 205 ~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~------------------- 265 (933)
T KOG1274|consen 205 VPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE------------------- 265 (933)
T ss_pred eeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch-------------------
Confidence 99999999999998844333332222222 3456679999999999999999999997311
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 001039 1142 PQKTVAVVRCIASDLERKRICSGGRNGLLRLW 1173 (1179)
Q Consensus 1142 ~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vW 1173 (1179)
-......|.+++|.|+++.|-.-...|+..+|
T Consensus 266 ~~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 266 RHEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred hccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 01233569999999998876555555554444
No 134
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.86 E-value=7.3e-21 Score=207.44 Aligned_cols=278 Identities=18% Similarity=0.343 Sum_probs=219.5
Q ss_pred ecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCc-eeEEEeccc--cccEE--EEecCCCEEEE
Q 001039 824 RGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGS-ELRATLKGH--TRTVR--AINSDRGKVVS 898 (1179)
Q Consensus 824 ~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~-~~~~~l~~h--~~~v~--~~s~d~~~l~s 898 (1179)
..|..-|.++++| ...+++.||+. |.|+|||+...+. ..+..+..- ..-+. .+.+||+.|++
T Consensus 416 L~HGEvVcAvtIS------------~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLiv 482 (705)
T KOG0639|consen 416 LAHGEVVCAVTIS------------NPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIV 482 (705)
T ss_pred hccCcEEEEEEec------------CCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEe
Confidence 4588889999887 67889999984 6799999874322 222333221 22333 35899999999
Q ss_pred EeCCCcEEEEECCCCeE--EEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCC
Q 001039 899 GSDDQSVLVWDKQTSQL--LEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS 975 (1179)
Q Consensus 899 gs~dg~I~iwd~~t~~~--~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~ 975 (1179)
|+.-.++.|||+..... ...+........+++.+ |.+..++++.||.|.|||+.+...++.+++|.+.+.|+.++++
T Consensus 483 GGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~d 562 (705)
T KOG0639|consen 483 GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKD 562 (705)
T ss_pred ccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCC
Confidence 99999999999976543 33444444566778888 6777889999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE--cCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEE
Q 001039 976 TGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVE 1053 (1179)
Q Consensus 976 ~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 1053 (1179)
|..|.+|+-|++|+.||+++++.+... .....|.++.. .++++++|-+++.+.+-... +.....+.-|++-|.++.
T Consensus 563 GtklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlK 640 (705)
T KOG0639|consen 563 GTKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLK 640 (705)
T ss_pred CceeecCCCccceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEE
Confidence 999999999999999999999876554 33567888776 45699999999999888854 444556667999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeC
Q 001039 1054 YSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHR 1118 (1179)
Q Consensus 1054 ~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~ 1118 (1179)
|.+.|+++++.+.|+.+..|...-+. ..+..-.......+.++.|+++|++|+.|....||.+
T Consensus 641 Fa~cGkwfvStGkDnlLnawrtPyGa--siFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 641 FAYCGKWFVSTGKDNLLNAWRTPYGA--SIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ecccCceeeecCchhhhhhccCcccc--ceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999999999999999999887643 2222222223334567999999999999998888875
No 135
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=4.7e-22 Score=226.08 Aligned_cols=232 Identities=22% Similarity=0.440 Sum_probs=210.9
Q ss_pred EecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ecCCCEEEEEe
Q 001039 823 IRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGS 900 (1179)
Q Consensus 823 l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d~~~l~sgs 900 (1179)
+..|...|.++..- ..++.+++|+.|-.+-+|.+. .......+.+|..+|-++ +++...|++|+
T Consensus 24 ~~~hsaav~~lk~~------------~s~r~~~~Gg~~~k~~L~~i~--kp~~i~S~~~hespIeSl~f~~~E~Llaags 89 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIR------------KSSRSLVTGGEDEKVNLWAIG--KPNAITSLTGHESPIESLTFDTSERLLAAGS 89 (825)
T ss_pred hhhhhhhhceeeee------------ccceeeccCCCceeecccccc--CCchhheeeccCCcceeeecCcchhhhcccc
Confidence 44688888888763 578899999999999999976 344445689999999986 67788999999
Q ss_pred CCCcEEEEECCCCeEEEEeecCCCcEEEEEEeC-CCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEE
Q 001039 901 DDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS-GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGIL 979 (1179)
Q Consensus 901 ~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 979 (1179)
.+|+|++||++.++.++++.+|...+..+.|++ +.+.+.|+.|+.+++||++...|...+++|...+.++.|+|+|+++
T Consensus 90 asgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v 169 (825)
T KOG0267|consen 90 ASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWV 169 (825)
T ss_pred cCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCcee
Confidence 999999999999999999999999999999995 7778899999999999999889999999999999999999999999
Q ss_pred EEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC--EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecC
Q 001039 980 AAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSS 1057 (1179)
Q Consensus 980 ~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd 1057 (1179)
+.|+.|..+++||...|+....|.+|...+.++.+++. .+++|+.|+++++||+++.+.+.........|.+..|+|+
T Consensus 170 ~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 170 ASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPD 249 (825)
T ss_pred eccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCC
Confidence 99999999999999999999999999999999999776 7899999999999999999888888888899999999999
Q ss_pred CCEEEEEeCCC
Q 001039 1058 DRGIITGSSDG 1068 (1179)
Q Consensus 1058 g~~l~sgs~Dg 1068 (1179)
++.+++|..+.
T Consensus 250 ~~~~~~G~q~s 260 (825)
T KOG0267|consen 250 GKIVLSGEQIS 260 (825)
T ss_pred ceeeecCchhh
Confidence 99999887654
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.86 E-value=2.3e-20 Score=209.97 Aligned_cols=271 Identities=15% Similarity=0.252 Sum_probs=207.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCeE------EEEeecCCCcEEEEEEeCC-CEEEEEEcCCeEEEEeCCCCeEEEE--eccC
Q 001039 893 RGKVVSGSDDQSVLVWDKQTSQL------LEELKGHDAQVSCVRMLSG-ERVLTASHDGTVKMWDVRTDTCVAT--VGRC 963 (1179)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~------~~~~~~h~~~V~~l~~s~~-~~l~sgs~dg~I~iwd~~~~~~~~~--~~~~ 963 (1179)
...|+.+.+||.|.++|...... +.....|...|..+.|.++ ..|++++.|.++++||+++++++.. +.+|
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH 143 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH 143 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence 45688999999999999865432 3455689999999999964 5688999999999999999988876 7899
Q ss_pred CCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCce---------------------------eEEeecCCC----CeEE
Q 001039 964 SSAVLCMEYDDS-TGILAAGGRDAVANIWDIRAGRQ---------------------------MHKFLGHTK----WIRS 1011 (1179)
Q Consensus 964 ~~~v~~l~~sp~-~~~l~sgs~dg~I~iwD~~~~~~---------------------------~~~~~~~~~----~I~s 1011 (1179)
...|.+++|.+. ...+++|+.||.|.|||++-... +.....+.. .|+.
T Consensus 144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv 223 (720)
T KOG0321|consen 144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV 223 (720)
T ss_pred ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence 999999999994 56788999999999999974220 111122333 3455
Q ss_pred EEE-cCCEEEEEeC-CCcEEEEEccCCeeeEE--------eecC---CcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 001039 1012 IRM-DRDTVITGSD-DWTARMWSISRGTCDAV--------LACH---AGPVQCVEYSSSDRGIITGSSDGLLRFWENDDA 1078 (1179)
Q Consensus 1012 l~~-~~~~l~sgs~-dg~I~iwd~~~~~~~~~--------~~~h---~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~ 1078 (1179)
+.| |.+.|++++. |+.|++||+++...... +..| .-.++++..+..|.+|.+.+.|+.|+.|++.+.
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 566 6778998887 99999999987654322 2223 346788888888999999999999999999873
Q ss_pred CcceEEEeecccCce---E-EEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEE
Q 001039 1079 GGIKCVKNVTIHSSA---I-LSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIAS 1154 (1179)
Q Consensus 1079 ~~~~~~~~~~~h~~~---i-~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~f 1154 (1179)
. ...+..+.++... + ..++|++.++++|+.|...++|.+.... .....+.+|.-.|++|+|
T Consensus 304 s-~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--------------~~~~~l~Ght~eVt~V~w 368 (720)
T KOG0321|consen 304 S-ISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--------------APPALLLGHTREVTTVRW 368 (720)
T ss_pred C-cCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--------------CChhhhhCcceEEEEEee
Confidence 3 3344444444332 2 2348999999999999999999997432 334456789999999999
Q ss_pred cCCC-CEEEEEeCCCcEEEEECCCC
Q 001039 1155 DLER-KRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1155 spdg-~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
.|.. .-+|+|++|-++++|++..|
T Consensus 369 ~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 369 LPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ccccCCCceeeccCcceEEEeccCc
Confidence 8743 34778899999999999765
No 137
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=1e-18 Score=198.41 Aligned_cols=264 Identities=11% Similarity=0.114 Sum_probs=194.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEE-EEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEE
Q 001039 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERV-LTASHDGTVKMWDVRTDTCVATVGRCSSAVLCM 970 (1179)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l 970 (1179)
+..+++++.|+.+++||..+++.+..+..+.. +.+++|+ ++..+ ++++.++.|++||..+++....+..+. .+..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEE
Confidence 35688999999999999999999888886544 6778898 55655 566788999999999998877765443 35678
Q ss_pred EEcCCCCEEEEE-eCCCeEEEEeCCCCceeEEeecCCCCeEEEEEc--CCEEEEEeCCC-cEEEEEccCCeeeEEeecCC
Q 001039 971 EYDDSTGILAAG-GRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDW-TARMWSISRGTCDAVLACHA 1046 (1179)
Q Consensus 971 ~~sp~~~~l~sg-s~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~--~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~h~ 1046 (1179)
+++|+++.++++ +.++.+++||+++++.+..+..+ ..+.+++++ ++.+++++.++ .+.+||.++++....... .
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~ 156 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-D 156 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-C
Confidence 999999977655 46899999999998877776432 345677775 55788777765 567789988877665442 3
Q ss_pred cCEEEEEEecCCCEEEEE-eCCCcEEEEEcCCCCcceEEEeeccc-----Cc----eEEEEecCCCEEEEE-ECCCcEEE
Q 001039 1047 GPVQCVEYSSSDRGIITG-SSDGLLRFWENDDAGGIKCVKNVTIH-----SS----AILSINAGDHWLGIG-AADNSMSL 1115 (1179)
Q Consensus 1047 ~~V~~l~~spdg~~l~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~h-----~~----~i~sis~dg~~lasg-s~Dg~I~i 1115 (1179)
....+++|+++|++++++ ..+|.|++||+.+++ .+..+..+ .. .-.++++++++++++ +.++.+.+
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK---VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce---eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 456789999999988655 469999999999843 33322211 11 124568999986554 45678999
Q ss_pred EeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCC
Q 001039 1116 FHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSG-GRNGLLRLWEATINI 1179 (1179)
Q Consensus 1116 wd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasg-s~Dg~I~vWdv~tg~ 1179 (1179)
||+.+. +..... .+...+.+++|+|+|++|+++ +.+|.|++||+.++.
T Consensus 234 ~d~~~~---------------~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 234 VDAKTY---------------EVLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred EECCCC---------------cEEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 998733 222221 233468899999999999886 569999999998863
No 138
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.4e-20 Score=189.27 Aligned_cols=245 Identities=19% Similarity=0.350 Sum_probs=199.4
Q ss_pred ecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCC---eEEEEeccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEeC
Q 001039 920 KGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTD---TCVATVGRCSSAVLCMEYDD--STGILAAGGRDAVANIWDI 993 (1179)
Q Consensus 920 ~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~---~~~~~~~~~~~~v~~l~~sp--~~~~l~sgs~dg~I~iwD~ 993 (1179)
..|.+.|..+... -|.+|+|++.|++|+|+..++. +.+.++.+|.++|..++|.. .|.+||+++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 4577777777665 6899999999999999999875 46778899999999999976 8999999999999999998
Q ss_pred CCCc--eeEEeecCCCCeEEEEEcCC----EEEEEeCCCcEEEEEccCC---eeeEEeecCCcCEEEEEEecC---C---
Q 001039 994 RAGR--QMHKFLGHTKWIRSIRMDRD----TVITGSDDWTARMWSISRG---TCDAVLACHAGPVQCVEYSSS---D--- 1058 (1179)
Q Consensus 994 ~~~~--~~~~~~~~~~~I~sl~~~~~----~l~sgs~dg~I~iwd~~~~---~~~~~~~~h~~~V~~l~~spd---g--- 1058 (1179)
.+++ .......|...|++++|-+. .|++++.||.|.+.+.++. ...+...+|.-.|++++|.|- |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 8874 34456789999999999654 8999999999999988764 233445689999999999985 4
Q ss_pred --------CEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecC----CCEEEEEECCCcEEEEeCCCCCcC
Q 001039 1059 --------RGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAG----DHWLGIGAADNSMSLFHRPQERLG 1124 (1179)
Q Consensus 1059 --------~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~d----g~~lasgs~Dg~I~iwd~~~~~~~ 1124 (1179)
+.|++|+.|..|+||+.+++ ....-..+.+|...|..+ +|. ...||+++.||++.||.....
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e--- 243 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE--- 243 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc---
Confidence 67999999999999999885 455556688999998766 343 368999999999999987521
Q ss_pred cccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001039 1125 GFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1125 ~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
...|+. ..+......+..+.||..|+.|+.++.|..|.+|.-+.
T Consensus 244 --------~e~wk~-tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 244 --------YEPWKK-TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred --------cCcccc-cccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 112221 12233567899999999999999999999999997543
No 139
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1e-18 Score=204.88 Aligned_cols=383 Identities=16% Similarity=0.245 Sum_probs=281.8
Q ss_pred CCCCCcccccCCcceEEE-EEccCCCceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEE
Q 001039 757 DDQQPAEASGIGRSWVQS-MFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALH 834 (1179)
Q Consensus 757 ~~~~~~~~~gh~~~i~~~-~fSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~ 834 (1179)
+.+++..+ |....+... .||+|++++..+..+ |.|+.+.|+. +++.+.+|..+++.+.
T Consensus 5 ~~~~~~~l-gg~n~~~~~avfSnD~k~l~~~~~~~V~VyS~~Tg~-------------------~i~~l~~~~a~l~s~~ 64 (792)
T KOG1963|consen 5 SGGKPALL-GGRNGNKSPAVFSNDAKFLFLCTGNFVKVYSTATGE-------------------CITSLEDHTAPLTSVI 64 (792)
T ss_pred cccceeee-ccccceecccccccCCcEEEEeeCCEEEEEecchHh-------------------hhhhcccccCccceee
Confidence 34555554 434444444 999999999998888 9999999998 8889999999999999
Q ss_pred eecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEe-----------------------------------
Q 001039 835 CVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATL----------------------------------- 879 (1179)
Q Consensus 835 ~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l----------------------------------- 879 (1179)
+.|.. +.-.++++++.||+|++||.... .+.+++
T Consensus 65 ~~~~~---------~~~~~~~~~sl~G~I~vwd~~~~--~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~ 133 (792)
T KOG1963|consen 65 VLPSS---------ENANYLIVCSLDGTIRVWDWSDG--ELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTF 133 (792)
T ss_pred ecCCC---------ccceEEEEEecCccEEEecCCCc--EEEEEEecCCceeEEEechhHhCccceeEeecccceeeeec
Confidence 97532 22368889999999999985311 000000
Q ss_pred --------------------------------------------------------------------cccccc--EEEE
Q 001039 880 --------------------------------------------------------------------KGHTRT--VRAI 889 (1179)
Q Consensus 880 --------------------------------------------------------------------~~h~~~--v~~~ 889 (1179)
..|.-. +.++
T Consensus 134 s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~ 213 (792)
T KOG1963|consen 134 SKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVAL 213 (792)
T ss_pred ccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEe
Confidence 011221 2346
Q ss_pred ecCCCEEEEEeCCCcEEEEECCC----CeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCC
Q 001039 890 NSDRGKVVSGSDDQSVLVWDKQT----SQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCS 964 (1179)
Q Consensus 890 s~d~~~l~sgs~dg~I~iwd~~t----~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~ 964 (1179)
+|+++++++|..||.|.+|.--. ......+.-|...|.+++|+ +|.++++|+..|.+.+|.+.+++ .+-+..-.
T Consensus 214 spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLg 292 (792)
T KOG1963|consen 214 SPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLG 292 (792)
T ss_pred ccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccC
Confidence 89999999999999999996432 23345678899999999999 89999999999999999999998 56667788
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec-----------CCCCeEEEEEcC--CEEEEEeCCCcEEEE
Q 001039 965 SAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG-----------HTKWIRSIRMDR--DTVITGSDDWTARMW 1031 (1179)
Q Consensus 965 ~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~-----------~~~~I~sl~~~~--~~l~sgs~dg~I~iw 1031 (1179)
++|..+.++||+...+....|+.|.+....+.....++.+ ..+-.+.+++++ +.++-.+..|.|.+|
T Consensus 293 s~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~y 372 (792)
T KOG1963|consen 293 SPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFY 372 (792)
T ss_pred CeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEE
Confidence 9999999999999999999999999998766554443332 133355666666 478888899999999
Q ss_pred EccCCeeeEEeec-----C------CcCEEEEEEecCCCEEEEEe--------CCC--cEEEEEcCCCCcceEEEe--ec
Q 001039 1032 SISRGTCDAVLAC-----H------AGPVQCVEYSSSDRGIITGS--------SDG--LLRFWENDDAGGIKCVKN--VT 1088 (1179)
Q Consensus 1032 d~~~~~~~~~~~~-----h------~~~V~~l~~spdg~~l~sgs--------~Dg--~I~iwd~~~~~~~~~~~~--~~ 1088 (1179)
|+-+.+.+..+.. + .-.+++++.+..|.+++|+- .|| .+++|-.........+.+ ..
T Consensus 373 dl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~ 452 (792)
T KOG1963|consen 373 DLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINN 452 (792)
T ss_pred eccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEec
Confidence 9988766655431 2 23477888888899999874 233 478897766443333322 23
Q ss_pred ccCceEEE--E-ec-CCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEE
Q 001039 1089 IHSSAILS--I-NA-GDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSG 1164 (1179)
Q Consensus 1089 ~h~~~i~s--i-s~-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasg 1164 (1179)
.|...+.+ + ++ .....++++.||.+++|-.....- --..-..|.|.....-|..++++++|+.||..| ++
T Consensus 453 PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n-----~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsll-a~ 526 (792)
T KOG1963|consen 453 PHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSN-----IYKKSSNWTCKAIGSYHKTPITALCFSQDGSLL-AV 526 (792)
T ss_pred CCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccc-----cCcCccceEEeeeeccccCcccchhhcCCCcEE-EE
Confidence 45554433 2 23 333899999999999998853211 112334688887777789999999999999655 56
Q ss_pred eCCCcEEEEECCC
Q 001039 1165 GRNGLLRLWEATI 1177 (1179)
Q Consensus 1165 s~Dg~I~vWdv~t 1177 (1179)
|.|++|.+||..+
T Consensus 527 s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 527 SFDDTITIWDYDT 539 (792)
T ss_pred ecCCEEEEecCCC
Confidence 7799999999876
No 140
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.1e-19 Score=188.87 Aligned_cols=283 Identities=16% Similarity=0.193 Sum_probs=202.4
Q ss_pred ccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccc
Q 001039 763 EASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKRE 840 (1179)
Q Consensus 763 ~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~ 840 (1179)
.+.||...|++++||.||++||+++.| ||+|+++.-.... ..+++.- ---+.-+.+.|+
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~e--------------Hr~~R~n-ve~dhpT~V~Fa---- 141 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKE--------------HRCIRQN-VEYDHPTRVVFA---- 141 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhh--------------hhHhhcc-ccCCCceEEEEC----
Confidence 357999999999999999999999999 9999998533110 0112110 011234677787
Q ss_pred eeccccccCCCCEE-EEEeCCCcEEEEcCCCCC--c-ee-------EEEeccccccEEEE--ecCCCEEEEEeCCCcEEE
Q 001039 841 VWDLVGDREDAGFF-ISGSTDCLVKIWDPSLRG--S-EL-------RATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLV 907 (1179)
Q Consensus 841 ~~~~~~~s~d~~~L-asgs~Dg~I~lWd~~~~~--~-~~-------~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~i 907 (1179)
||-+-+ ++.-...++++|...... . .. ...-+.|...+..+ .-.+.+|++++.|.+|.+
T Consensus 142 --------pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~l 213 (420)
T KOG2096|consen 142 --------PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICL 213 (420)
T ss_pred --------CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEE
Confidence 666544 455556789999864211 1 00 01112345555543 567889999999999999
Q ss_pred EECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCC---C-----eEEEEeccCCCcEEEEEEcCCCCE
Q 001039 908 WDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRT---D-----TCVATVGRCSSAVLCMEYDDSTGI 978 (1179)
Q Consensus 908 wd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~---~-----~~~~~~~~~~~~v~~l~~sp~~~~ 978 (1179)
|++. |+.+..+......-+..+.+ +|..+++++..-.|++|.+-- | ..+..+++|.+.|..++|+++...
T Consensus 214 w~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r 292 (420)
T KOG2096|consen 214 WDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR 292 (420)
T ss_pred EecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce
Confidence 9998 99999998777777788888 678888888888999998632 2 234567899999999999999999
Q ss_pred EEEEeCCCeEEEEeCCC-------CceeEEe----ecCCCCeEEEEEcCC-EEEEEeCCCcEEEEEccCCeeeEEee-cC
Q 001039 979 LAAGGRDAVANIWDIRA-------GRQMHKF----LGHTKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLA-CH 1045 (1179)
Q Consensus 979 l~sgs~dg~I~iwD~~~-------~~~~~~~----~~~~~~I~sl~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~-~h 1045 (1179)
+++.+.||.+++||+.- .+.+++. ....+....++.+|+ .+++.+....+.++..++|+...++. .|
T Consensus 293 ~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h 372 (420)
T KOG2096|consen 293 AVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIH 372 (420)
T ss_pred eEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhh
Confidence 99999999999999863 1222222 112222335555544 33444456689999999988766654 68
Q ss_pred CcCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001039 1046 AGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074 (1179)
Q Consensus 1046 ~~~V~~l~~spdg~~l~sgs~Dg~I~iwd 1074 (1179)
...|.+++|+++|+++++++ |..+++..
T Consensus 373 ~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 373 STTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred cCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 99999999999999999986 55577764
No 141
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1e-20 Score=217.04 Aligned_cols=283 Identities=17% Similarity=0.318 Sum_probs=221.6
Q ss_pred cceEEEEEccCCCceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEeccc---CceEEEEeecccceecc
Q 001039 769 RSWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHA---GAITALHCVTKREVWDL 844 (1179)
Q Consensus 769 ~~i~~~~fSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~---~~V~~v~~s~~~~~~~~ 844 (1179)
....++.-.+|-..++.++.. .+++.+........ +....++-. -.+..|.|+
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~---------------~~~~~k~kqn~~~S~~DVkW~-------- 96 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEK---------------CNHRFKTKQNKFYSAADVKWG-------- 96 (839)
T ss_pred cccceEeecCCcceeEEecccceeeEeeCcccCCcc---------------eeeecccccceeeehhhcccc--------
Confidence 445566777888888888888 88888775432110 111111111 123455665
Q ss_pred ccccCCCCEEEEEeCCCcEEEEcCCCC-CceeEEEeccccccEEEE---ecCCCEEEEEeCCCcEEEEECCCCeEEEEee
Q 001039 845 VGDREDAGFFISGSTDCLVKIWDPSLR-GSELRATLKGHTRTVRAI---NSDRGKVVSGSDDQSVLVWDKQTSQLLEELK 920 (1179)
Q Consensus 845 ~~~s~d~~~Lasgs~Dg~I~lWd~~~~-~~~~~~~l~~h~~~v~~~---s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~ 920 (1179)
.-+.++|||++..|.|.+||++.. ..+.+..+..|...+.++ +....+|++|+.||+|++||++..+-..++.
T Consensus 97 ---~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~ 173 (839)
T KOG0269|consen 97 ---QLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFR 173 (839)
T ss_pred ---cchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccc
Confidence 267899999999999999998742 234556789999999976 3567899999999999999999999999999
Q ss_pred cCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCC-eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 001039 921 GHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTD-TCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR 997 (1179)
Q Consensus 921 ~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~ 997 (1179)
+....|..+.|+ +++.++++...|.+.+||++.. ++...+..|.++|.|+.|+|++.+||+||.|+.|+|||..+++
T Consensus 174 ~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 174 SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSR 253 (839)
T ss_pred ccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCC
Confidence 999999999999 5789999999999999999874 5667788999999999999999999999999999999998765
Q ss_pred eeEEee-cCCCCeEEEEEcCC---EEEEEe--CCCcEEEEEccCCe-eeEEeecCCcCEEEEEEec-CCCEEEEEeCCCc
Q 001039 998 QMHKFL-GHTKWIRSIRMDRD---TVITGS--DDWTARMWSISRGT-CDAVLACHAGPVQCVEYSS-SDRGIITGSSDGL 1069 (1179)
Q Consensus 998 ~~~~~~-~~~~~I~sl~~~~~---~l~sgs--~dg~I~iwd~~~~~-~~~~~~~h~~~V~~l~~sp-dg~~l~sgs~Dg~ 1069 (1179)
.-.... ....++..+.|.|. .|++++ .|-.|+|||++..- +..++..|...++.++|.. |-..+.+++.||+
T Consensus 254 ~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~t 333 (839)
T KOG0269|consen 254 AKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGT 333 (839)
T ss_pred ccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccH
Confidence 433322 34568899999765 677766 57789999998764 5667889999999999965 4556889999998
Q ss_pred EEEEEcCC
Q 001039 1070 LRFWENDD 1077 (1179)
Q Consensus 1070 I~iwd~~~ 1077 (1179)
|..-.+++
T Consensus 334 v~qh~~kn 341 (839)
T KOG0269|consen 334 VLQHLFKN 341 (839)
T ss_pred HHHhhhhc
Confidence 77655554
No 142
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.3e-20 Score=216.13 Aligned_cols=279 Identities=18% Similarity=0.372 Sum_probs=212.1
Q ss_pred eccccccEEEEecCCCEEEEEeCCCcEEEEECCCC----eEEEEeecCC---CcEEEEEEe--CCCEEEEEEcCCeEEEE
Q 001039 879 LKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTS----QLLEELKGHD---AQVSCVRML--SGERVLTASHDGTVKMW 949 (1179)
Q Consensus 879 l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~----~~~~~~~~h~---~~V~~l~~s--~~~~l~sgs~dg~I~iw 949 (1179)
++++...| ++.++-..++.++. ..++++.+... ++...+++.. -.+..+.|. ..++|++++..|.|.+|
T Consensus 38 ~k~~~nAI-s~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vW 115 (839)
T KOG0269|consen 38 LKAKANAI-SVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVW 115 (839)
T ss_pred cccccceE-eecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEE
Confidence 44444333 45677777777775 36777766432 2222222111 234556776 57899999999999999
Q ss_pred eCCC---CeEEEEeccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC---CEEEEE
Q 001039 950 DVRT---DTCVATVGRCSSAVLCMEYDD-STGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR---DTVITG 1022 (1179)
Q Consensus 950 d~~~---~~~~~~~~~~~~~v~~l~~sp-~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~---~~l~sg 1022 (1179)
|+.. .+.+..+..|...+.++.|++ ..++|++|+.||.|++||++..+...++.+....|+.+.|++ +.++++
T Consensus 116 dlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~ 195 (839)
T KOG0269|consen 116 DLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASI 195 (839)
T ss_pred ecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEe
Confidence 9987 556667888999999999998 567899999999999999999999999999999999999954 589999
Q ss_pred eCCCcEEEEEccCC-eeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceE--EEEec
Q 001039 1023 SDDWTARMWSISRG-TCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAI--LSINA 1099 (1179)
Q Consensus 1023 s~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i--~sis~ 1099 (1179)
.+.|.+++||++.. ++...+.+|.++|.|+.|+|++.+|||||.|++|+|||+.+... ..+.++. ...++ ..+-|
T Consensus 196 ~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tIn-Tiapv~rVkWRP 273 (839)
T KOG0269|consen 196 HDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTIN-TIAPVGRVKWRP 273 (839)
T ss_pred cCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEe-ecceeeeeeecc
Confidence 99999999999875 56677889999999999999999999999999999999987442 2222221 22233 33445
Q ss_pred CC-CEEEEEE--CCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 001039 1100 GD-HWLGIGA--ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDL-ERKRICSGGRNGLLRLWEA 1175 (1179)
Q Consensus 1100 dg-~~lasgs--~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~Lasgs~Dg~I~vWdv 1175 (1179)
+. ..||+++ .|-.|+|||+... +-+..++..|...++.++|.. |...+.+++.||+|..-.+
T Consensus 274 ~~~~hLAtcsmv~dtsV~VWDvrRP--------------YIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 274 ARSYHLATCSMVVDTSVHVWDVRRP--------------YIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred CccchhhhhhccccceEEEEeeccc--------------cccceeeeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence 44 4566654 5889999999743 245667889999999999954 6678999999998764433
No 143
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.1e-19 Score=197.71 Aligned_cols=279 Identities=14% Similarity=0.201 Sum_probs=229.9
Q ss_pred CcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccc
Q 001039 768 GRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLV 845 (1179)
Q Consensus 768 ~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~ 845 (1179)
+++|.++.|+|.-..+.+++.| ++++-+++... ..++.+.--..+|.+.+|+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-----------------~~lqS~~l~~fPi~~a~f~--------- 266 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-----------------PKLQSIHLEKFPIQKAEFA--------- 266 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC-----------------hhheeeeeccCccceeeec---------
Confidence 5789999999999999999999 99999986541 2566677778899999998
Q ss_pred cccCCCC-EEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE---EEecCCCEEEEEeCCCcEEEEECCCCeEEEEeec
Q 001039 846 GDREDAG-FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR---AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG 921 (1179)
Q Consensus 846 ~~s~d~~-~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~---~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~ 921 (1179)
|+|. .+++++.-..++.||+.......+....|+..... .+++++++|+..|..|.|.+....+++.+.+++
T Consensus 267 ---p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K- 342 (514)
T KOG2055|consen 267 ---PNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK- 342 (514)
T ss_pred ---CCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-
Confidence 7888 89999999999999987554455555666664433 569999999999999999999999999999887
Q ss_pred CCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCC-CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC----
Q 001039 922 HDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCS-SAVLCMEYDDSTGILAAGGRDAVANIWDIRA---- 995 (1179)
Q Consensus 922 h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~---- 995 (1179)
-.+.|..++|+ ++..+++++.+|.|.+||++...+++.+.... -.-++++.++++.++|+|+..|.|.|||.++
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s 422 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS 422 (514)
T ss_pred eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhcc
Confidence 45779999998 78899999999999999999999988885432 2346788889999999999999999999653
Q ss_pred --CceeEEeecCCCCeEEEEEcCC--EEEEEe--CCCcEEEEEccCCeeeEEeecC---CcCEEEEEEecCCCEEEEEeC
Q 001039 996 --GRQMHKFLGHTKWIRSIRMDRD--TVITGS--DDWTARMWSISRGTCDAVLACH---AGPVQCVEYSSSDRGIITGSS 1066 (1179)
Q Consensus 996 --~~~~~~~~~~~~~I~sl~~~~~--~l~sgs--~dg~I~iwd~~~~~~~~~~~~h---~~~V~~l~~spdg~~l~sgs~ 1066 (1179)
.+++..+..-...|+++.|+++ .++.+| .+..+++-.+.+.+....+... -+.|+|++|||.|.++|.|..
T Consensus 423 ~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 423 TNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE 502 (514)
T ss_pred CCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC
Confidence 4566667667778999999766 555554 5678999988877766665533 356899999999999999999
Q ss_pred CCcEEEEEcC
Q 001039 1067 DGLLRFWEND 1076 (1179)
Q Consensus 1067 Dg~I~iwd~~ 1076 (1179)
+|.+.+|.+.
T Consensus 503 ~grv~l~kL~ 512 (514)
T KOG2055|consen 503 AGRVHLFKLH 512 (514)
T ss_pred CCceeeEeec
Confidence 9999999875
No 144
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.7e-19 Score=201.27 Aligned_cols=290 Identities=17% Similarity=0.221 Sum_probs=225.3
Q ss_pred eeEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeC--CCEEEEEEcCCeEEEE
Q 001039 874 ELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS--GERVLTASHDGTVKMW 949 (1179)
Q Consensus 874 ~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~--~~~l~sgs~dg~I~iw 949 (1179)
.+...+.||++.|.++ .+.|.+|++|+.||+|+||.+.+|++++++. ..+.|.|++|++ ...++++..++.+.+.
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEe
Confidence 3456789999999987 4789999999999999999999999999887 456899999984 2233333333334444
Q ss_pred eCCCC-------------------------------------eEEEEeccCCCcEEEEEEcCCCCEEEEEeCC---CeEE
Q 001039 950 DVRTD-------------------------------------TCVATVGRCSSAVLCMEYDDSTGILAAGGRD---AVAN 989 (1179)
Q Consensus 950 d~~~~-------------------------------------~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~d---g~I~ 989 (1179)
+..-| .-++..-.|...|..+.|+..|.+|++...+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 43211 0112223567789999999999999987653 4788
Q ss_pred EEeCCCCceeEEeecCCCCeEEEEEcCC--EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCC
Q 001039 990 IWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSD 1067 (1179)
Q Consensus 990 iwD~~~~~~~~~~~~~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~D 1067 (1179)
|+++...+...-++...+.|.++.|+|. ++++++ ...|++||+..+..++.+.....+|.+++.+|.|.-|+.|+.|
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC
Confidence 9999877766667777788999999876 555554 5679999999988888888788899999999999999999999
Q ss_pred CcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCC
Q 001039 1068 GLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKT 1145 (1179)
Q Consensus 1068 g~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h 1145 (1179)
+.+..+|++-+ .+..+++..|...+.++ ++.-.++++|+.||++.|+.-.-. .+-........+..+.+|
T Consensus 629 ~k~~WfDldls--skPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY------~Dl~qnpliVPlK~L~gH 700 (733)
T KOG0650|consen 629 KKMCWFDLDLS--SKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVY------NDLLQNPLIVPLKRLRGH 700 (733)
T ss_pred CeeEEEEcccC--cchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeee------hhhhcCCceEeeeeccCc
Confidence 99999999864 35777888899888777 456678999999999999964310 000011112556677888
Q ss_pred ccc----EEEEEEcCCCCEEEEEeCCCcEEEE
Q 001039 1146 VAV----VRCIASDLERKRICSGGRNGLLRLW 1173 (1179)
Q Consensus 1146 ~~~----V~~v~fspdg~~Lasgs~Dg~I~vW 1173 (1179)
... |.++.|+|...+|.|+|.||+|++|
T Consensus 701 ~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 701 EKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeecccceEeecccCCCceEEecCCCceEEee
Confidence 866 9999999999999999999999999
No 145
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.85 E-value=3.5e-18 Score=194.05 Aligned_cols=282 Identities=11% Similarity=0.108 Sum_probs=199.8
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccE-EEEecCCCEE-EEEeCCCcEEEEECCCCeEEEEeecCCCcEEE
Q 001039 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTV-RAINSDRGKV-VSGSDDQSVLVWDKQTSQLLEELKGHDAQVSC 928 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v-~~~s~d~~~l-~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~ 928 (1179)
++.++|++.||.|++||.. +.+....+.++.... .+++++++.+ ++++.++.|++||..+++....+..+.. +..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~--t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTA--TLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECC--CCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccE
Confidence 3568899999999999976 344556666554322 3678999876 5667889999999999988877765544 456
Q ss_pred EEEe-CCCEEEE-EEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCceeEEeecC
Q 001039 929 VRML-SGERVLT-ASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDA-VANIWDIRAGRQMHKFLGH 1005 (1179)
Q Consensus 929 l~~s-~~~~l~s-gs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg-~I~iwD~~~~~~~~~~~~~ 1005 (1179)
++++ +++.+++ ++.++.+++||+.+++.+..+.. ...+.+++|+|+|+++++++.++ .+..||.++++.......
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~- 155 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV- 155 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-
Confidence 7787 5666654 45689999999999887777643 33468899999999999988765 567789988877665432
Q ss_pred CCCeEEEEEc--CCEEE-EEeCCCcEEEEEccCCeeeEEeecCC-------cCEEEEEEecCCCEEEE-EeCCCcEEEEE
Q 001039 1006 TKWIRSIRMD--RDTVI-TGSDDWTARMWSISRGTCDAVLACHA-------GPVQCVEYSSSDRGIIT-GSSDGLLRFWE 1074 (1179)
Q Consensus 1006 ~~~I~sl~~~--~~~l~-sgs~dg~I~iwd~~~~~~~~~~~~h~-------~~V~~l~~spdg~~l~s-gs~Dg~I~iwd 1074 (1179)
.....+++++ +..++ ++..++.|++||+++++....+..+. .....++|+|+++++++ .+.++.+.+||
T Consensus 156 ~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d 235 (300)
T TIGR03866 156 DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVD 235 (300)
T ss_pred CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEE
Confidence 2344566774 45664 44569999999999998777664321 12356889999998654 45567899999
Q ss_pred cCCCCcceEEEee-cccCceEEEEecCCCEEEEEE-CCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEE
Q 001039 1075 NDDAGGIKCVKNV-TIHSSAILSINAGDHWLGIGA-ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCI 1152 (1179)
Q Consensus 1075 ~~~~~~~~~~~~~-~~h~~~i~sis~dg~~lasgs-~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v 1152 (1179)
..+.+ ..... .++.....+++|+|++|++++ .+|.|.+||+.+. +++..... ....+++
T Consensus 236 ~~~~~---~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~---------------~~~~~~~~-~~~~~~~ 296 (300)
T TIGR03866 236 AKTYE---VLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL---------------KVIKSIKV-GRLPWGV 296 (300)
T ss_pred CCCCc---EEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC---------------cEEEEEEc-cccccee
Confidence 98743 23222 233334456789999998864 6899999999843 33333332 2445777
Q ss_pred EEcC
Q 001039 1153 ASDL 1156 (1179)
Q Consensus 1153 ~fsp 1156 (1179)
+++|
T Consensus 297 ~~~~ 300 (300)
T TIGR03866 297 VVRP 300 (300)
T ss_pred EeCC
Confidence 7765
No 146
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=4.1e-17 Score=192.53 Aligned_cols=365 Identities=26% Similarity=0.480 Sum_probs=278.3
Q ss_pred cccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccC-ceEEEEe-ec
Q 001039 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAG-AITALHC-VT 837 (1179)
Q Consensus 762 ~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~-~V~~v~~-s~ 837 (1179)
....+|...+..+.|.+++..++.++.+ +.+|+...+.. .+..+.++.. .+..+.+ +
T Consensus 59 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~- 119 (466)
T COG2319 59 LLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK------------------LIKSLEGLHDSSVSKLALSS- 119 (466)
T ss_pred heeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCce------------------eEEEEeccCCCceeeEEEEC-
Confidence 3567788889999999999999988866 99999886541 3455666443 6666665 3
Q ss_pred ccceeccccccCCCC-EEEEEeC-CCcEEEEcCCCCCceeEEEeccccccEE--EEecCCCEEEEEeC-CCcEEEEECCC
Q 001039 838 KREVWDLVGDREDAG-FFISGST-DCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSD-DQSVLVWDKQT 912 (1179)
Q Consensus 838 ~~~~~~~~~~s~d~~-~Lasgs~-Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~l~sgs~-dg~I~iwd~~t 912 (1179)
+++. .++..+. |+.+++|+... .......+..|...+. ++++++..+++++. |+.+++|+..+
T Consensus 120 -----------~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (466)
T COG2319 120 -----------PDGNSILLASSSLDGTVKLWDLST-PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT 187 (466)
T ss_pred -----------CCcceEEeccCCCCccEEEEEecC-CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC
Confidence 5666 5555444 99999999762 2566678888998888 46899988888886 99999999999
Q ss_pred CeEEEEeecCCCcEEEEEEe-CCC-EEEEEEcCCeEEEEeCCCCeEEE-EeccCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 001039 913 SQLLEELKGHDAQVSCVRML-SGE-RVLTASHDGTVKMWDVRTDTCVA-TVGRCSSAVLCMEYDDSTGILAAGGRDAVAN 989 (1179)
Q Consensus 913 ~~~~~~~~~h~~~V~~l~~s-~~~-~l~sgs~dg~I~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~ 989 (1179)
+..+..+.+|...+.+++|+ ++. .+++++.|+.|++||...+.... .+..|.... ...|++++..+++++.|+.++
T Consensus 188 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~ 266 (466)
T COG2319 188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIR 266 (466)
T ss_pred CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEE
Confidence 89999999999999999999 444 45555899999999999888887 577777765 448999998899999999999
Q ss_pred EEeCCCCce-eEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEEee--cCCcCEEEEEEecCCCEEEEE
Q 001039 990 IWDIRAGRQ-MHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLA--CHAGPVQCVEYSSSDRGIITG 1064 (1179)
Q Consensus 990 iwD~~~~~~-~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~spdg~~l~sg 1064 (1179)
+||.+.... ...+.+|...+.++.+++ ..+++++.|+.+.+||..+........ .|...+..+.+.+++..++.+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (466)
T COG2319 267 LWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346 (466)
T ss_pred EeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEe
Confidence 999987765 444467888999999976 577778889999999998887776665 788889999994332566655
Q ss_pred -eCCCcEEEEEcCCCCcceEEEeecccC-ceEEEEecCCCEEEE-EECCCcEEEEeCCCCCcCcccCCCCccccceeeee
Q 001039 1065 -SSDGLLRFWENDDAGGIKCVKNVTIHS-SAILSINAGDHWLGI-GAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRT 1141 (1179)
Q Consensus 1065 -s~Dg~I~iwd~~~~~~~~~~~~~~~h~-~~i~sis~dg~~las-gs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~ 1141 (1179)
..|+.+.+|+..... ......... .....+.++ ..+.. +..++.+.+|+..... ....
T Consensus 347 ~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~ 407 (466)
T COG2319 347 GSDDGTIRLWDLRTGK---PLKTLEGHSNVLSVSFSPD-GRVVSSGSTDGTVRLWDLSTGS---------------LLRN 407 (466)
T ss_pred ecCCCcEEeeecCCCc---eeEEecCCceEEEEEECCC-CCEEEEecCCCceEEEecccCe---------------eeee
Confidence 688999999998843 232222232 223333443 34444 7889999999997432 1111
Q ss_pred cCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001039 1142 PQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1142 ~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
...+...+....+++++..+++++.++++++|+..+
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 408 LDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 212216789999999999999999999999999865
No 147
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3.1e-19 Score=185.21 Aligned_cols=256 Identities=19% Similarity=0.317 Sum_probs=198.1
Q ss_pred ecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCC----eEEEEeccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEe
Q 001039 920 KGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTD----TCVATVGRCSSAVLCMEYDD--STGILAAGGRDAVANIWD 992 (1179)
Q Consensus 920 ~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~----~~~~~~~~~~~~v~~l~~sp--~~~~l~sgs~dg~I~iwD 992 (1179)
.+|.+-|.++.|. .|.++++|+.|++|+|||.+.. .+....+.|.+.|..+.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4688889999998 7999999999999999997543 35566778999999999965 689999999999999997
Q ss_pred CC---------CCceeEEeecCCCCeEEEEEcCC----EEEEEeCCCcEEEEEccCCe------eeEEee-------cCC
Q 001039 993 IR---------AGRQMHKFLGHTKWIRSIRMDRD----TVITGSDDWTARMWSISRGT------CDAVLA-------CHA 1046 (1179)
Q Consensus 993 ~~---------~~~~~~~~~~~~~~I~sl~~~~~----~l~sgs~dg~I~iwd~~~~~------~~~~~~-------~h~ 1046 (1179)
-. ......++....+.|+.+.|.+. .+++++.||.+|||+.-..- ...+++ .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 52 12334566778889999999765 79999999999999865432 222332 356
Q ss_pred cCEEEEEEecC---CCEEEEEeCC-----CcEEEEEcCCCC-cceEEEeecccCceEEEEe--c----CCCEEEEEECCC
Q 001039 1047 GPVQCVEYSSS---DRGIITGSSD-----GLLRFWENDDAG-GIKCVKNVTIHSSAILSIN--A----GDHWLGIGAADN 1111 (1179)
Q Consensus 1047 ~~V~~l~~spd---g~~l~sgs~D-----g~I~iwd~~~~~-~~~~~~~~~~h~~~i~sis--~----dg~~lasgs~Dg 1111 (1179)
.+..|+.|+|. ..+|+.|+.+ +.++||....+. ....+..+.+|..+|.+++ | .-.+||+++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 67889999874 4568888766 579999887655 5667778889999998874 4 346899999999
Q ss_pred cEEEEeCCCCCcCcc---cCCCCccc--cceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1112 SMSLFHRPQERLGGF---SGTGSKMS--GWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1112 ~I~iwd~~~~~~~~~---~~~g~~~~--~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
|+||.+...+-.-. ...+..+. ..+.+..+..|.+.|+.+.|.-.|..|+|.|+||+||+|...
T Consensus 250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 99999974221000 00111111 235566788999999999999999999999999999999753
No 148
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=6e-19 Score=183.13 Aligned_cols=254 Identities=19% Similarity=0.316 Sum_probs=198.7
Q ss_pred EecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCC--CceeEEEeccccccEEEE---e-cCCCEE
Q 001039 823 IRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLR--GSELRATLKGHTRTVRAI---N-SDRGKV 896 (1179)
Q Consensus 823 l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~--~~~~~~~l~~h~~~v~~~---s-~d~~~l 896 (1179)
-.+|.+-|.++.|. +.|+.+|||+.|++|+|||.... +..+....+.|.+.|..+ + .-|+.+
T Consensus 9 ~s~h~DlihdVs~D------------~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvv 76 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFD------------FYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVV 76 (361)
T ss_pred ccCCcceeeeeeec------------ccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceE
Confidence 45799999999986 88999999999999999996432 345667788999999976 3 358999
Q ss_pred EEEeCCCcEEEEECCC---------CeEEEEeecCCCcEEEEEEeC---CCEEEEEEcCCeEEEEeCCCCeE------EE
Q 001039 897 VSGSDDQSVLVWDKQT---------SQLLEELKGHDAQVSCVRMLS---GERVLTASHDGTVKMWDVRTDTC------VA 958 (1179)
Q Consensus 897 ~sgs~dg~I~iwd~~t---------~~~~~~~~~h~~~V~~l~~s~---~~~l~sgs~dg~I~iwd~~~~~~------~~ 958 (1179)
|+++.|+++.||.-.. -....++......|+.+.|.+ |-.+++++.||.++||+.-.--. ..
T Consensus 77 A~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~ 156 (361)
T KOG2445|consen 77 ATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH 156 (361)
T ss_pred EEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhh
Confidence 9999999999997521 123446667788999999984 66799999999999998754321 12
Q ss_pred Eec-------cCCCcEEEEEEcCC---CCEEEEEeCC-----CeEEEEeCCCC----ceeEEeecCCCCeEEEEEcCC--
Q 001039 959 TVG-------RCSSAVLCMEYDDS---TGILAAGGRD-----AVANIWDIRAG----RQMHKFLGHTKWIRSIRMDRD-- 1017 (1179)
Q Consensus 959 ~~~-------~~~~~v~~l~~sp~---~~~l~sgs~d-----g~I~iwD~~~~----~~~~~~~~~~~~I~sl~~~~~-- 1017 (1179)
.+. .+.....|+.|++. ..+|++|+.+ +.+.||....+ ..+.++.+|..+|++++|.|+
T Consensus 157 Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~G 236 (361)
T KOG2445|consen 157 EIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIG 236 (361)
T ss_pred hhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccC
Confidence 222 35667889999973 4678888765 47888876543 345667899999999999765
Q ss_pred ----EEEEEeCCCcEEEEEccCC--------------------eeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEE
Q 001039 1018 ----TVITGSDDWTARMWSISRG--------------------TCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFW 1073 (1179)
Q Consensus 1018 ----~l~sgs~dg~I~iwd~~~~--------------------~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iw 1073 (1179)
.+++++.|| |+||.+... +.+..+..|.+.|+.+.|+-.|..|++.+.||.|++|
T Consensus 237 r~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 237 RSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLW 315 (361)
T ss_pred CceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence 799999999 999998731 2345577899999999999999999999999999999
Q ss_pred EcCCCCcceEEEeecc
Q 001039 1074 ENDDAGGIKCVKNVTI 1089 (1179)
Q Consensus 1074 d~~~~~~~~~~~~~~~ 1089 (1179)
...-....+|...+..
T Consensus 316 kany~n~~kC~sv~~~ 331 (361)
T KOG2445|consen 316 KANYNNLWKCTSVLKA 331 (361)
T ss_pred hhhhhhhheeeeEEec
Confidence 8776555666655543
No 149
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.4e-19 Score=195.11 Aligned_cols=277 Identities=12% Similarity=0.229 Sum_probs=221.4
Q ss_pred cCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE--EEecCCC-EEEEEeCCC
Q 001039 827 AGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRG-KVVSGSDDQ 903 (1179)
Q Consensus 827 ~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~-~l~sgs~dg 903 (1179)
.++|++|.|+ |....+++|+.||+++||.++......++.+.-...+|. +|.|+|. .+++++...
T Consensus 213 ~~~I~sv~FH------------p~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrk 280 (514)
T KOG2055|consen 213 HGGITSVQFH------------PTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRK 280 (514)
T ss_pred cCCceEEEec------------CCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccce
Confidence 4789999999 788999999999999999998555555565554455555 5799998 899999999
Q ss_pred cEEEEECCCCeEEE--EeecCC-CcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEE
Q 001039 904 SVLVWDKQTSQLLE--ELKGHD-AQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGIL 979 (1179)
Q Consensus 904 ~I~iwd~~t~~~~~--~~~~h~-~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 979 (1179)
..+.||+.+.+... ...++. ..+.....+ +++.|+..+..|.|.+....+++.+.+++ ..+.|..++|+.+++.|
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l 359 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKEL 359 (514)
T ss_pred EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEE
Confidence 99999999886543 233433 344555556 78899999999999999999999988884 46789999999999999
Q ss_pred EEEeCCCeEEEEeCCCCceeEEeecCCC---CeEEEEEcCCEEEEEeCCCcEEEEEccC------CeeeEEeecCCcCEE
Q 001039 980 AAGGRDAVANIWDIRAGRQMHKFLGHTK---WIRSIRMDRDTVITGSDDWTARMWSISR------GTCDAVLACHAGPVQ 1050 (1179)
Q Consensus 980 ~sgs~dg~I~iwD~~~~~~~~~~~~~~~---~I~sl~~~~~~l~sgs~dg~I~iwd~~~------~~~~~~~~~h~~~V~ 1050 (1179)
++.+.+|.|.+||++...+++.+....+ .-.|++.++.++|+|+..|.|-|||.++ .+++..+..-...|+
T Consensus 360 ~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~It 439 (514)
T KOG2055|consen 360 LASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAIT 439 (514)
T ss_pred EEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeee
Confidence 9999999999999999999988864433 2224445788999999999999999654 356666666678899
Q ss_pred EEEEecCCCEEEEEeC--CCcEEEEEcCCCCcceEEEeeccc-----CceEEEEecCCCEEEEEECCCcEEEEeCC
Q 001039 1051 CVEYSSSDRGIITGSS--DGLLRFWENDDAGGIKCVKNVTIH-----SSAILSINAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1051 ~l~~spdg~~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~h-----~~~i~sis~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
++.|++|++.||.+|. +..+++--+.+ ......+... ....++++|.|.++|.|..+|.+.+|.+.
T Consensus 440 sl~Fn~d~qiLAiaS~~~knalrLVHvPS---~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 440 SLQFNHDAQILAIASRVKKNALRLVHVPS---CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeCcchhhhhhhhhccccceEEEeccc---eeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 9999999999988874 66788887776 4445444433 33446679999999999999999999874
No 150
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=4.6e-19 Score=182.35 Aligned_cols=294 Identities=21% Similarity=0.327 Sum_probs=219.7
Q ss_pred cccCCcceEEEEEcc-CCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccc
Q 001039 764 ASGIGRSWVQSMFSR-EASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKRE 840 (1179)
Q Consensus 764 ~~gh~~~i~~~~fSp-dg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~ 840 (1179)
...|+.+|..+...+ .|+++++|+.| |.+||++....... .......+-. -....-.+|+-+|.++.|-|
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~---s~li~k~~c~-v~~~h~~~Hky~iss~~WyP--- 111 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA---SGLIAKHKCI-VAKQHENGHKYAISSAIWYP--- 111 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhh---ccceeheeee-ccccCCccceeeeeeeEEee---
Confidence 356778888888877 68999999999 99999986542110 0000000000 01233467999999999987
Q ss_pred eeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE--EEec---CCCEEEEEeCCCcEEEEECCCCeE
Q 001039 841 VWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINS---DRGKVVSGSDDQSVLVWDKQTSQL 915 (1179)
Q Consensus 841 ~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~---d~~~l~sgs~dg~I~iwd~~t~~~ 915 (1179)
-|...+.+++-|.++++||.++ .+....++ -.+.|. +++| ...++|+|..|-+|++.|+.+|..
T Consensus 112 --------~DtGmFtssSFDhtlKVWDtnT--lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~ 180 (397)
T KOG4283|consen 112 --------IDTGMFTSSSFDHTLKVWDTNT--LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF 180 (397)
T ss_pred --------ecCceeecccccceEEEeeccc--ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc
Confidence 6888999999999999999763 33222332 223343 3443 456788999999999999999999
Q ss_pred EEEeecCCCcEEEEEEeC--CCEEEEEEcCCeEEEEeCCCC-eEEEEe--------------ccCCCcEEEEEEcCCCCE
Q 001039 916 LEELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRTD-TCVATV--------------GRCSSAVLCMEYDDSTGI 978 (1179)
Q Consensus 916 ~~~~~~h~~~V~~l~~s~--~~~l~sgs~dg~I~iwd~~~~-~~~~~~--------------~~~~~~v~~l~~sp~~~~ 978 (1179)
-.++.||.+.|.++.|++ .-.+++|+.||.|++||++.. .+...+ ..|.+.+..++|+.++.+
T Consensus 181 sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~ 260 (397)
T KOG4283|consen 181 SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARY 260 (397)
T ss_pred eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchh
Confidence 999999999999999995 335789999999999999864 333332 246678999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEeec---CCC----CeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEE
Q 001039 979 LAAGGRDAVANIWDIRAGRQMHKFLG---HTK----WIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQC 1051 (1179)
Q Consensus 979 l~sgs~dg~I~iwD~~~~~~~~~~~~---~~~----~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~ 1051 (1179)
+++++.|..+++|+..+|+....-.+ |.. .+..-+.+.+.++---.++.+.++++-.+..+..+..|-..|.|
T Consensus 261 l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c 340 (397)
T KOG4283|consen 261 LASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINC 340 (397)
T ss_pred hhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeE
Confidence 99999999999999988764322111 111 11111223445555556799999999999999999999999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEEc
Q 001039 1052 VEYSSSDRGIITGSSDGLLRFWEN 1075 (1179)
Q Consensus 1052 l~~spdg~~l~sgs~Dg~I~iwd~ 1075 (1179)
.++-|+=+...+|+.|+.|..|..
T Consensus 341 ~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 341 AAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EeecCchhhhhccccCCccccccc
Confidence 999999999999999999999976
No 151
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=2e-19 Score=196.17 Aligned_cols=286 Identities=15% Similarity=0.197 Sum_probs=218.2
Q ss_pred ceeeccCceEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCEEEE--EeC
Q 001039 782 SRSHSFSRVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFIS--GST 859 (1179)
Q Consensus 782 ~las~~~dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Las--gs~ 859 (1179)
.+|++++++++||+...+...+ .-... ..-.|.+++|. ..++|++ .+.
T Consensus 6 ~~aS~gd~~kl~D~s~~~~~~~----------------~~~~t-~~pg~~s~~w~-------------~~n~lvvas~~g 55 (673)
T KOG4378|consen 6 HVASTGDKTKLSDFSDLETKSE----------------YVHQT-AEPGDFSFNWQ-------------RRNFLVVASMAG 55 (673)
T ss_pred eeeccCCceEEeecccccCccc----------------cccCC-CCCcceeeecc-------------ccceEEEeecCC
Confidence 4566666699999986552111 11111 11238889886 2333444 456
Q ss_pred CCcEEEEcCCCCCc--eeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCE
Q 001039 860 DCLVKIWDPSLRGS--ELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGER 936 (1179)
Q Consensus 860 Dg~I~lWd~~~~~~--~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~ 936 (1179)
|..|++|.-..... .......+....+.+......++++|+..+.|+|||++...+.+.+++|...|+++.++ .+.+
T Consensus 56 dk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~Dey 135 (673)
T KOG4378|consen 56 DKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEY 135 (673)
T ss_pred ceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcce
Confidence 88899998542211 22333344433333334556899999999999999999888888899999999999999 6889
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEEeccC-CCcEEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCceeEE-eecCCCCeEEEE
Q 001039 937 VLTASHDGTVKMWDVRTDTCVATVGRC-SSAVLCMEYDDSTGI-LAAGGRDAVANIWDIRAGRQMHK-FLGHTKWIRSIR 1013 (1179)
Q Consensus 937 l~sgs~dg~I~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~-l~sgs~dg~I~iwD~~~~~~~~~-~~~~~~~I~sl~ 1013 (1179)
|++++..|.|.+..+.++.....+... ...|.-+.|++..+. |.+++.+|.|.+||+....++.. ...|..+...++
T Consensus 136 iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gic 215 (673)
T KOG4378|consen 136 IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGIC 215 (673)
T ss_pred eEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcce
Confidence 999999999999999999888777655 445669999997664 56788999999999988777655 467899999999
Q ss_pred EcCC---EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeeccc
Q 001039 1014 MDRD---TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIH 1090 (1179)
Q Consensus 1014 ~~~~---~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h 1090 (1179)
|++. ++++.+.|..|.+||.+.......+. ...+..+++|+++|.+|++|+..|.|..||++... ..+.....|
T Consensus 216 fspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~Pv~v~sah 292 (673)
T KOG4378|consen 216 FSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--APVAVRSAH 292 (673)
T ss_pred ecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC--CCceEeeec
Confidence 9653 89999999999999998777666665 56789999999999999999999999999999753 566667788
Q ss_pred CceEEEEecC
Q 001039 1091 SSAILSINAG 1100 (1179)
Q Consensus 1091 ~~~i~sis~d 1100 (1179)
...|.++++.
T Consensus 293 ~~sVt~vafq 302 (673)
T KOG4378|consen 293 DASVTRVAFQ 302 (673)
T ss_pred ccceeEEEee
Confidence 8889888643
No 152
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.1e-18 Score=204.39 Aligned_cols=269 Identities=17% Similarity=0.250 Sum_probs=213.7
Q ss_pred ccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeeccccee
Q 001039 765 SGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVW 842 (1179)
Q Consensus 765 ~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~ 842 (1179)
..|..+.+.++|.|+|+.+.+++.| |++|+...... .-.++.-|...|.+++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------------------~P~ti~~~g~~v~~ia~------- 64 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE------------------EPETIDISGELVSSIAC------- 64 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc------------------CCchhhccCceeEEEee-------
Confidence 4677888889999999999999999 99999876521 11223337888898885
Q ss_pred ccccccCCCCEEEEEeCCCcEEEEcCCCCCce-eEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeec
Q 001039 843 DLVGDREDAGFFISGSTDCLVKIWDPSLRGSE-LRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG 921 (1179)
Q Consensus 843 ~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~-~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~ 921 (1179)
++++|++|+.+++|.+|.+...... .+..+. -...+.+++-+|++++.||.|-.|++-+..+......+++
T Consensus 65 -------~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rft-lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg 136 (933)
T KOG1274|consen 65 -------YSNHFLTGSEQNTVLRYKFPSGEEDTILARFT-LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG 136 (933)
T ss_pred -------cccceEEeeccceEEEeeCCCCCccceeeeee-ccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc
Confidence 4679999999999999997633322 222222 2334557889999999999999999999999999999999
Q ss_pred CCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccC--------CCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 001039 922 HDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRC--------SSAVLCMEYDDSTGILAAGGRDAVANIWD 992 (1179)
Q Consensus 922 h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--------~~~v~~l~~sp~~~~l~sgs~dg~I~iwD 992 (1179)
|+++|.++.|+ .++.+++.+.||.|++||+.++.+..++.+- ...+..++|+|+|..+++.+.|+.|++|+
T Consensus 137 h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~ 216 (933)
T KOG1274|consen 137 HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYS 216 (933)
T ss_pred cCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEc
Confidence 99999999999 6888999999999999999999887766431 34567899999988899999999999999
Q ss_pred CCCCceeEEeec--CCCCeEEEEEc--CCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCC
Q 001039 993 IRAGRQMHKFLG--HTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDG 1068 (1179)
Q Consensus 993 ~~~~~~~~~~~~--~~~~I~sl~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg 1068 (1179)
..+++....+.. +...+..+.|+ |.+||+++.||.|.|||.++... ......|++++|.|+++.+-.-...|
T Consensus 217 r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 217 RKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred cCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeecc
Confidence 999998888754 33447888885 55999999999999999987222 22356799999999887665444444
Q ss_pred cE
Q 001039 1069 LL 1070 (1179)
Q Consensus 1069 ~I 1070 (1179)
..
T Consensus 293 ~~ 294 (933)
T KOG1274|consen 293 TL 294 (933)
T ss_pred cc
Confidence 33
No 153
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=9.2e-21 Score=215.70 Aligned_cols=251 Identities=20% Similarity=0.411 Sum_probs=214.9
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEE
Q 001039 894 GKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEY 972 (1179)
Q Consensus 894 ~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~ 972 (1179)
..++.+..+-.+++||.+. +-.|...+.++..- .+..+++|+.|..+-+|.+..-..+..+.+|.++|.++.|
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f 78 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTF 78 (825)
T ss_pred cccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeec
Confidence 3445555566677888653 33466667776654 5677899999999999999887777788999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC--EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEE
Q 001039 973 DDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQ 1050 (1179)
Q Consensus 973 sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~ 1050 (1179)
+++..++++|+.+|+|++||+..++.++++.+|...+.++.|+|- +.+.|+.|+.+.+||.+...|...+.+|...|.
T Consensus 79 ~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~ 158 (825)
T KOG0267|consen 79 DTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVD 158 (825)
T ss_pred CcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeE
Confidence 999999999999999999999999999999999999999999764 788899999999999999999999999999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccC
Q 001039 1051 CVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSG 1128 (1179)
Q Consensus 1051 ~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~ 1128 (1179)
.+.|+|+|++++.|++|..++|||... .+....+..|...+.++ +|..-++++|+.|+++++||+++-
T Consensus 159 ~l~lsP~Gr~v~~g~ed~tvki~d~~a---gk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf------- 228 (825)
T KOG0267|consen 159 VLRLSPDGRWVASGGEDNTVKIWDLTA---GKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF------- 228 (825)
T ss_pred EEeecCCCceeeccCCcceeeeecccc---cccccccccccccccccccCchhhhhccCCCCceeeeecccee-------
Confidence 999999999999999999999999987 56777888898888776 678889999999999999999743
Q ss_pred CCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCC
Q 001039 1129 TGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNG 1168 (1179)
Q Consensus 1129 ~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg 1168 (1179)
+.+.........|.+++|+|+|..+++|..+.
T Consensus 229 --------e~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 229 --------EVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred --------EEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 44444445577899999999999998886543
No 154
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.4e-18 Score=180.39 Aligned_cols=282 Identities=17% Similarity=0.235 Sum_probs=211.8
Q ss_pred EEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCe
Q 001039 877 ATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDT 955 (1179)
Q Consensus 877 ~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~ 955 (1179)
.++.........|++.|.+||+|+.||.|.|||+.|...-+.+.+|..+|++++|+ +|..++++|.|..|.+||+..|.
T Consensus 19 ~tld~~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 19 HTLDNPLAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred eeccCCccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence 44443334455689999999999999999999999999888999999999999999 89999999999999999999999
Q ss_pred EEEEeccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEee--cCCC---CeE-EEEE--cCCEEEEEeCCC
Q 001039 956 CVATVGRCSSAVLCMEYDDSTG-ILAAGGRDAVANIWDIRAGRQMHKFL--GHTK---WIR-SIRM--DRDTVITGSDDW 1026 (1179)
Q Consensus 956 ~~~~~~~~~~~v~~l~~sp~~~-~l~sgs~dg~I~iwD~~~~~~~~~~~--~~~~---~I~-sl~~--~~~~l~sgs~dg 1026 (1179)
+++.+ ...++|+.+.|+|... ..++.-.+..-.+.++..++ +++. ...+ .+. +..+ .|+++++|...|
T Consensus 99 ~l~ri-rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKG 175 (405)
T KOG1273|consen 99 PLKRI-RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKG 175 (405)
T ss_pred ceeEE-EccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEEecCcc
Confidence 98887 5678999999999443 33333334445555555422 2221 1111 111 1123 577999999999
Q ss_pred cEEEEEccCCeeeEEeecCC-cCEEEEEEecCCCEEEEEeCCCcEEEEEcCCC------CcceEEEeecc----cCceEE
Q 001039 1027 TARMWSISRGTCDAVLACHA-GPVQCVEYSSSDRGIITGSSDGLLRFWENDDA------GGIKCVKNVTI----HSSAIL 1095 (1179)
Q Consensus 1027 ~I~iwd~~~~~~~~~~~~h~-~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~------~~~~~~~~~~~----h~~~i~ 1095 (1179)
.+.++|..+.+++..++-.. ..|..+.++..|+.++..+.|..||.|+++.- +.......+.. ..-.-.
T Consensus 176 kllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~c 255 (405)
T KOG1273|consen 176 KLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKC 255 (405)
T ss_pred eEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhe
Confidence 99999999999998887655 78999999999999999999999999998741 11111111110 111235
Q ss_pred EEecCCCEEEEEEC-CCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCc-ccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 001039 1096 SINAGDHWLGIGAA-DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTV-AVVRCIASDLERKRICSGGRNGLLRLW 1173 (1179)
Q Consensus 1096 sis~dg~~lasgs~-Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~-~~V~~v~fspdg~~Lasgs~Dg~I~vW 1173 (1179)
+++.+|.++++|+. -..++||... .| .+++.+.|.. ....+|.|+|-...+++- ..|+|++|
T Consensus 256 cfs~dgeYv~a~s~~aHaLYIWE~~---------~G------sLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw 319 (405)
T KOG1273|consen 256 CFSGDGEYVCAGSARAHALYIWEKS---------IG------SLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIW 319 (405)
T ss_pred eecCCccEEEeccccceeEEEEecC---------Cc------ceeeeecCCchhheeecccccceeeeeec-cCCceEEE
Confidence 67889999988774 4679999987 44 4555565655 567889999998888888 78999999
Q ss_pred ECCC
Q 001039 1174 EATI 1177 (1179)
Q Consensus 1174 dv~t 1177 (1179)
.+.+
T Consensus 320 ~~~~ 323 (405)
T KOG1273|consen 320 AVVQ 323 (405)
T ss_pred Eeec
Confidence 8753
No 155
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.82 E-value=1.4e-18 Score=193.93 Aligned_cols=136 Identities=21% Similarity=0.277 Sum_probs=107.2
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeE---EEecccccc-EEE--EecC
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELR---ATLKGHTRT-VRA--INSD 892 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~---~~l~~h~~~-v~~--~s~d 892 (1179)
.+..+.+|.+.|+.+.|+| -+..+|||||.|..|+||.+..+....+ ...-+|... |-+ ++|.
T Consensus 71 ~i~~l~~H~d~VtDl~Fsp-----------F~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpT 139 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSP-----------FADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPT 139 (1012)
T ss_pred ccceeecccceeeccCccc-----------cchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccC
Confidence 6778999999999999996 5678999999999999999862211111 112234333 333 4676
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCC-CeEEEEeccCCC
Q 001039 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRT-DTCVATVGRCSS 965 (1179)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~~~~ 965 (1179)
..-|+..+..|+++|||+.+++.+..+.+|.+.|.++.|+ +|..+++++.|..|+|||.+. ++.+++..+|.+
T Consensus 140 aDgil~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~ 214 (1012)
T KOG1445|consen 140 ADGILASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGG 214 (1012)
T ss_pred cCceEEeccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCcccccccccc
Confidence 6666667778999999999999999999999999999999 899999999999999999875 456666655543
No 156
>smart00800 uDENN Domain always found upstream of DENN domain, found in a variety of signalling proteins. The uDENN domain is part of the tripartite DENN domain. It is always found upstream of the DENN domain itself, which is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=99.82 E-value=4.7e-20 Score=166.84 Aligned_cols=89 Identities=28% Similarity=0.557 Sum_probs=75.3
Q ss_pred CCcceEEEEEEccCCCccccCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCcccCCCceEEeecCCCCCCCCCC
Q 001039 1 MARVFEYFVVCGIGPEIRTLDGSKGYHGPEYYYLSSVLDQFPPLNHSLYTPPPPQLSTCVLPAGVQFYSSGFDSDDPSTF 80 (1179)
Q Consensus 1 ~~rl~dyfvvvG~~~~~~~~~~~~~~~~~~~~~~p~vl~~yP~~~~~~~~~~~~~~~~fc~P~g~~~~~~~~~~~~~~~~ 80 (1179)
+.||+|||+|||++.+.. +....|+|+||+|||+.++++.+ .++.|++||||+|+.+..+ ..+..
T Consensus 1 ~~rl~d~f~vvg~~~~~~---------~~~~~~~p~il~~yP~~~~~~~~-~~~~i~~FCfP~G~~~~~~-----~~~~~ 65 (89)
T smart00800 1 PSRLFDYFVVVGLDSDTG---------PLGRSYKPEILQRYPEKDEEDFP-LPDSIPLFCFPEGLLFVTQ-----KSSKD 65 (89)
T ss_pred CCcceeEEEEEeCCCCCC---------CcCcccceEEEeECCCCCCccCC-CccCCCeeECCCCeEeecc-----cCCCC
Confidence 579999999999876542 23346899999999999888764 6799999999999999752 24567
Q ss_pred CceeEEEEEcCCCCeEEEEEEEec
Q 001039 81 PRTYPIVLTEGDGSKIYVSCISFR 104 (1179)
Q Consensus 81 p~~f~fvlT~~~g~~~Yg~cl~f~ 104 (1179)
+++|+||||++||+|+||+|++||
T Consensus 66 ~~~f~FvLT~~dG~r~yG~Cl~f~ 89 (89)
T smart00800 66 PQFFSFVLTDIDGSRRYGFCRRFY 89 (89)
T ss_pred CcEEEEEEECCCCCEEEEEEEEeC
Confidence 899999999999999999999986
No 157
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.82 E-value=9.5e-19 Score=197.02 Aligned_cols=308 Identities=15% Similarity=0.223 Sum_probs=211.9
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCce----eEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeEEEE--ee
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRGSE----LRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEE--LK 920 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~~~----~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~--~~ 920 (1179)
.....|+.+.+||.|.++|....... .......|...|..+ .|....|++++.|.++++||+++++++.. +.
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~ 141 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL 141 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec
Confidence 45678999999999999996522221 124566799999875 57677899999999999999999999887 89
Q ss_pred cCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCe---------------------------EEEEeccCCCcEEE--
Q 001039 921 GHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDT---------------------------CVATVGRCSSAVLC-- 969 (1179)
Q Consensus 921 ~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~---------------------------~~~~~~~~~~~v~~-- 969 (1179)
||...|.+++|. +...+++|+.||.|.|||++-.. .+..-+.+...|.+
T Consensus 142 GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssv 221 (720)
T KOG0321|consen 142 GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSV 221 (720)
T ss_pred ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeee
Confidence 999999999998 57789999999999999986332 00111223344444
Q ss_pred -EEEcCCCCEEEEEeC-CCeEEEEeCCCCceeEE--------eecC---CCCeEEEEEc--CCEEEEEeCCCcEEEEEcc
Q 001039 970 -MEYDDSTGILAAGGR-DAVANIWDIRAGRQMHK--------FLGH---TKWIRSIRMD--RDTVITGSDDWTARMWSIS 1034 (1179)
Q Consensus 970 -l~~sp~~~~l~sgs~-dg~I~iwD~~~~~~~~~--------~~~~---~~~I~sl~~~--~~~l~sgs~dg~I~iwd~~ 1034 (1179)
+.+..|...||+++. |+.|++||+++...... +..| ...+.++..| |.++.+.+.|+.|+.||+.
T Consensus 222 Tvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~ 301 (720)
T KOG0321|consen 222 TVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMR 301 (720)
T ss_pred EEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecc
Confidence 556677888888887 99999999997654322 2223 2256666664 5788887889999999997
Q ss_pred CCe--eeEEeecCCcC--EEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEec---CCCEEEEE
Q 001039 1035 RGT--CDAVLACHAGP--VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINA---GDHWLGIG 1107 (1179)
Q Consensus 1035 ~~~--~~~~~~~h~~~--V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~---dg~~lasg 1107 (1179)
+-. ++..+.++... -..-..+||+.++++|+.|...++|.+.+.. .....+.+|...|.++.+ .-.-++++
T Consensus 302 s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt~V~w~pS~~t~v~Tc 379 (720)
T KOG0321|consen 302 SLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--APPALLLGHTREVTTVRWLPSATTPVATC 379 (720)
T ss_pred ccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--CChhhhhCcceEEEEEeeccccCCCceee
Confidence 642 33444433221 2233568999999999999999999998854 334456689988877732 23345666
Q ss_pred ECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCC
Q 001039 1108 AADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERK 1159 (1179)
Q Consensus 1108 s~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~ 1159 (1179)
++|..+++|++..+--.....+.... .....+.+.+|...+..+.++-.+.
T Consensus 380 SdD~~~kiW~l~~~l~e~~~adk~s~-v~~~~~rfk~~~p~~~nv~ss~~~t 430 (720)
T KOG0321|consen 380 SDDFRVKIWRLSNGLEEIYAADKDSI-VYEYSRRFKGHLPQVLNVNSSLRKT 430 (720)
T ss_pred ccCcceEEEeccCchhhccccccchh-hhhhhhhhhcccccccccccccccc
Confidence 99999999999643211111111111 1122333456666666665554443
No 158
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.7e-18 Score=193.41 Aligned_cols=314 Identities=18% Similarity=0.240 Sum_probs=242.6
Q ss_pred CCCCcccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEe
Q 001039 758 DQQPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHC 835 (1179)
Q Consensus 758 ~~~~~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~ 835 (1179)
+.+.....||..-+.++...|.|.+||+|+.| ||+|.+.||. |+++..- .+.|.||+|
T Consensus 390 t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR-------------------cvr~~~~-d~~I~~vaw 449 (733)
T KOG0650|consen 390 TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR-------------------CVRTVQF-DSEIRSVAW 449 (733)
T ss_pred ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce-------------------EEEEEee-cceeEEEEe
Confidence 34556678999999999999999999999999 9999999998 7777653 458999999
Q ss_pred ecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEE----eCCCcEEEEECC
Q 001039 836 VTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSG----SDDQSVLVWDKQ 911 (1179)
Q Consensus 836 s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sg----s~dg~I~iwd~~ 911 (1179)
+|. ++-..||++-.+. +.|-+...+..... + +....|+++ ..++.+..|.-.
T Consensus 450 ~P~----------~~~~vLAvA~~~~-~~ivnp~~G~~~e~----~---------~t~ell~~~~~~~~p~~~~~~W~~~ 505 (733)
T KOG0650|consen 450 NPL----------SDLCVLAVAVGEC-VLIVNPIFGDRLEV----G---------PTKELLASAPNESEPDAAVVTWSRA 505 (733)
T ss_pred cCC----------CCceeEEEEecCc-eEEeCccccchhhh----c---------chhhhhhcCCCccCCcccceeechh
Confidence 863 4445566555444 66666442211110 0 011111111 235577788654
Q ss_pred CCe----EEEEeecCCCcEEEEEEe-CCCEEEEEEcC---CeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEe
Q 001039 912 TSQ----LLEELKGHDAQVSCVRML-SGERVLTASHD---GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGG 983 (1179)
Q Consensus 912 t~~----~~~~~~~h~~~V~~l~~s-~~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs 983 (1179)
..+ -+...-.|...|..+.|+ .|++|++...+ ..|.|.++...+...-+....+.|.++.|+|...++++++
T Consensus 506 ~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT 585 (733)
T KOG0650|consen 506 SLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT 585 (733)
T ss_pred hhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe
Confidence 211 133444588999999999 89999987654 5688999887777666767788999999999999999887
Q ss_pred CCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCC-eeeEEeecCCcCEEEEEEecCCCE
Q 001039 984 RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRG-TCDAVLACHAGPVQCVEYSSSDRG 1060 (1179)
Q Consensus 984 ~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~spdg~~ 1060 (1179)
. ..|++||+...+.++++.....+|.++++++ +.++.|+.|+.+..+|+.-+ ++.+++..|...+++++|++.-.+
T Consensus 586 q-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPL 664 (733)
T KOG0650|consen 586 Q-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPL 664 (733)
T ss_pred c-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccce
Confidence 5 6899999999888888888888999999864 79999999999999999765 567788889999999999999999
Q ss_pred EEEEeCCCcEEEEE------cCCCCcceEEEeecccCce----EEE--EecCCCEEEEEECCCcEEEE
Q 001039 1061 IITGSSDGLLRFWE------NDDAGGIKCVKNVTIHSSA----ILS--INAGDHWLGIGAADNSMSLF 1116 (1179)
Q Consensus 1061 l~sgs~Dg~I~iwd------~~~~~~~~~~~~~~~h~~~----i~s--is~dg~~lasgs~Dg~I~iw 1116 (1179)
+++|+.||++.|+- +..+..+..++.+.+|... |+. ++|...+|++++.||+|++|
T Consensus 665 fas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 665 FASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 99999999999884 3233446678888888766 543 48999999999999999998
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.80 E-value=2.6e-18 Score=187.61 Aligned_cols=281 Identities=14% Similarity=0.179 Sum_probs=208.5
Q ss_pred CCcEEEEcCCCCCceeEEEeccc--cccEEEEecCCCE-EEEE--eCCCcEEEEECCCC--eEEEEeecCCCcEEEEEEe
Q 001039 860 DCLVKIWDPSLRGSELRATLKGH--TRTVRAINSDRGK-VVSG--SDDQSVLVWDKQTS--QLLEELKGHDAQVSCVRML 932 (1179)
Q Consensus 860 Dg~I~lWd~~~~~~~~~~~l~~h--~~~v~~~s~d~~~-l~sg--s~dg~I~iwd~~t~--~~~~~~~~h~~~V~~l~~s 932 (1179)
..++++||+...... ..+..| ...+.++.++.+. |+++ +.|..+++|.-... +....-+.....-.|++..
T Consensus 11 gd~~kl~D~s~~~~~--~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~ 88 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETK--SEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACA 88 (673)
T ss_pred CCceEEeecccccCc--cccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhh
Confidence 346999997633222 222222 2235566544333 4444 56788899974322 2222212222233444433
Q ss_pred -CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCC-CeE
Q 001039 933 -SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTK-WIR 1010 (1179)
Q Consensus 933 -~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~-~I~ 1010 (1179)
...++++|+..++|+|||++...+.+.+++|.+.|+++.++-...+||+++..|.|.+..+.++.....+....+ .|.
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvR 168 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVR 168 (673)
T ss_pred hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEE
Confidence 357899999999999999998888888999999999999999999999999999999999999988888765544 455
Q ss_pred EEEEcCC---EEEEEeCCCcEEEEEccCCeeeEEe-ecCCcCEEEEEEecCC-CEEEEEeCCCcEEEEEcCCCCcceEEE
Q 001039 1011 SIRMDRD---TVITGSDDWTARMWSISRGTCDAVL-ACHAGPVQCVEYSSSD-RGIITGSSDGLLRFWENDDAGGIKCVK 1085 (1179)
Q Consensus 1011 sl~~~~~---~l~sgs~dg~I~iwd~~~~~~~~~~-~~h~~~V~~l~~spdg-~~l~sgs~Dg~I~iwd~~~~~~~~~~~ 1085 (1179)
-+.+++. +|.+++.+|.|.+||+....+...+ ..|..+...++|+|.. ..|++.+.|.+|.+||+.......++.
T Consensus 169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~ 248 (673)
T KOG4378|consen 169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT 248 (673)
T ss_pred EeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee
Confidence 6777543 7899999999999999887766554 4799999999999965 567889999999999999744333332
Q ss_pred eecccCceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCC
Q 001039 1086 NVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLER 1158 (1179)
Q Consensus 1086 ~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg 1158 (1179)
-.|.-...++.++|.+|++|+..|.|..||+...+ .++.....|...|++++|-|..
T Consensus 249 --y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--------------~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 249 --YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--------------APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred --ecCCcceeeecCCceEEEeecCCceEEEEecccCC--------------CCceEeeecccceeEEEeeecc
Confidence 24555667889999999999999999999997432 4566777899999999997764
No 160
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.9e-18 Score=187.69 Aligned_cols=230 Identities=21% Similarity=0.352 Sum_probs=180.9
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCc-eeE------------------EEeccccccEEEEecC---CCEEEEEeCCCcEE
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRGS-ELR------------------ATLKGHTRTVRAINSD---RGKVVSGSDDQSVL 906 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~~-~~~------------------~~l~~h~~~v~~~s~d---~~~l~sgs~dg~I~ 906 (1179)
.-|+++|.|+.|..|.|||+..... .+. ..-.+|+..|.+++.+ .+.|++||.|.+|+
T Consensus 190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK 269 (463)
T ss_pred CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence 4578999999999999999763221 111 1123688888876544 46799999999999
Q ss_pred EEECCCCeEEEEeecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCC-CCEEEEEe
Q 001039 907 VWDKQTSQLLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS-TGILAAGG 983 (1179)
Q Consensus 907 iwd~~t~~~~~~~~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~-~~~l~sgs 983 (1179)
+||+.+|++..++..|.+.|.++.|+ ....+++|+.|++|.+.|.+........-...+.|-.++|+|. ...+++++
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 99999999999999999999999999 4788999999999999999853332222234678999999994 55677888
Q ss_pred CCCeEEEEeCCCC-ceeEEeecCCCCeEEEEEc---CCEEEEEeCCCcEEEEEccCCeeeEEe--ecCCcCEEEEEEecC
Q 001039 984 RDAVANIWDIRAG-RQMHKFLGHTKWIRSIRMD---RDTVITGSDDWTARMWSISRGTCDAVL--ACHAGPVQCVEYSSS 1057 (1179)
Q Consensus 984 ~dg~I~iwD~~~~-~~~~~~~~~~~~I~sl~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~--~~h~~~V~~l~~spd 1057 (1179)
.||+++-+|+|+. +++.+++.|.+.|.+++++ ++++++++.|+.|++|++......... .-.-+...|.++.|+
T Consensus 350 ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~ 429 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPD 429 (463)
T ss_pred CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCC
Confidence 9999999999985 8999999999999999995 569999999999999998654432221 111234666777776
Q ss_pred CC-EEEEEeCCCcEEEEEcCCC
Q 001039 1058 DR-GIITGSSDGLLRFWENDDA 1078 (1179)
Q Consensus 1058 g~-~l~sgs~Dg~I~iwd~~~~ 1078 (1179)
-. .++.|+..+.+++||+.+.
T Consensus 430 ~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 430 VAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred cceEEEecCccceEEEeecccC
Confidence 54 4677888888999999874
No 161
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=4.5e-18 Score=178.10 Aligned_cols=292 Identities=16% Similarity=0.263 Sum_probs=216.4
Q ss_pred eEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCc-eeEEEecc--ccccEE--EEe---c
Q 001039 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGS-ELRATLKG--HTRTVR--AIN---S 891 (1179)
Q Consensus 820 ~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~-~~~~~l~~--h~~~v~--~~s---~ 891 (1179)
-+...+|+.+|.+++|.+-.. -.+.+.+|+.|. ..+.+|+....+. ..++.... |..... +++ .
T Consensus 31 ~~l~ed~~~~I~gv~fN~~~~-------~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~ 102 (385)
T KOG1034|consen 31 NHLKEDHNKPIFGVAFNSFLG-------CDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSN 102 (385)
T ss_pred eehhccCCCccceeeeehhcC-------CCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCC
Confidence 345678999999999974211 133456666664 4688998763331 23333322 333332 232 2
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeC--CCEEEEEEcCCeEEEEeCCCCeEEEEec---cCCC
Q 001039 892 -DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRTDTCVATVG---RCSS 965 (1179)
Q Consensus 892 -d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~---~~~~ 965 (1179)
.+.++|+||.-|.|+|.|+.++++...+.+|...|+.+.+.+ .+++++||.|..|++||++++.++..+. +|.+
T Consensus 103 ~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd 182 (385)
T KOG1034|consen 103 TGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD 182 (385)
T ss_pred CCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC
Confidence 256889999999999999999999999999999999999995 4599999999999999999999998874 5889
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE----------------------------EeecCCCCeEEEEEcCC
Q 001039 966 AVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMH----------------------------KFLGHTKWIRSIRMDRD 1017 (1179)
Q Consensus 966 ~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~----------------------------~~~~~~~~I~sl~~~~~ 1017 (1179)
.|.++.|+.+|.++++++.|..+++|++...+... +-..|...|.|+.|-++
T Consensus 183 eVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd 262 (385)
T KOG1034|consen 183 EVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGD 262 (385)
T ss_pred cEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhh
Confidence 99999999999999999999999999998321100 11246677888888889
Q ss_pred EEEEEeCCCcEEEEEcc-CCe-------------eeEEeecCCcCEEEE--EEecCCCEEEEEeCCCcEEEEEcCCCCcc
Q 001039 1018 TVITGSDDWTARMWSIS-RGT-------------CDAVLACHAGPVQCV--EYSSSDRGIITGSSDGLLRFWENDDAGGI 1081 (1179)
Q Consensus 1018 ~l~sgs~dg~I~iwd~~-~~~-------------~~~~~~~h~~~V~~l--~~spdg~~l~sgs~Dg~I~iwd~~~~~~~ 1081 (1179)
++++-+.++.|..|... -++ ....+.-....|+-+ +|+|-+++||.|...|+|.+||++..+..
T Consensus 263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc
Confidence 99999999999999862 111 122233333445544 56777999999999999999999986543
Q ss_pred eEE---EeecccCceEEEEecCCCEEEEEECCCcEEEEeCC
Q 001039 1082 KCV---KNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1082 ~~~---~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
.+. ....+....-.+++.||..|+..++|++|.-||.-
T Consensus 343 ~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 343 KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 222 22222333447789999999999999999999963
No 162
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.79 E-value=5.3e-18 Score=184.65 Aligned_cols=289 Identities=18% Similarity=0.224 Sum_probs=213.1
Q ss_pred ccccCCcceEEEEEccCCC--ceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecc
Q 001039 763 EASGIGRSWVQSMFSREAS--SRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTK 838 (1179)
Q Consensus 763 ~~~gh~~~i~~~~fSpdg~--~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~ 838 (1179)
...-|.+.|.+++|.|.-+ .+|+|..- |-+||+.+.+.. ...+..+.+|.++|.++.|+|
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d---------------~d~v~~f~~hs~~Vs~l~F~P- 244 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD---------------KDGVYLFTPHSGPVSGLKFSP- 244 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc---------------cCceEEeccCCccccceEecC-
Confidence 3455668999999999876 45555443 999999854421 125788999999999999997
Q ss_pred cceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE--EEecCCCEEEEEeCCCcEEEEECCCCeE-
Q 001039 839 REVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQL- 915 (1179)
Q Consensus 839 ~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~l~sgs~dg~I~iwd~~t~~~- 915 (1179)
.+...+++.|.||+|++-|++....+.+..+........ .++.+...++.|+.=|...+||.+++..
T Consensus 245 ----------~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~ 314 (498)
T KOG4328|consen 245 ----------ANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE 314 (498)
T ss_pred ----------CChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc
Confidence 677889999999999999988544454444442233333 2466777788888878999999988654
Q ss_pred EEEeecCCCcEEEEEEeC--CCEEEEEEcCCeEEEEeCCCCeE----EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 001039 916 LEELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRTDTC----VATVGRCSSAVLCMEYDDSTGILAAGGRDAVAN 989 (1179)
Q Consensus 916 ~~~~~~h~~~V~~l~~s~--~~~l~sgs~dg~I~iwd~~~~~~----~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~ 989 (1179)
...+.-|...|.++++++ ...++++|.|++.+|||++.-.. ......|...|.+..|||++..|++.+.|..|+
T Consensus 315 ~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IR 394 (498)
T KOG4328|consen 315 YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIR 394 (498)
T ss_pred chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceE
Confidence 667778899999999994 67899999999999999986432 223347889999999999888899999999999
Q ss_pred EEeCC----CCceeEEeec---CCCCeE--EEEEcCC--EEEEEeCCCcEEEEEccCCeeeEEeecCC-cCEEEE-EEec
Q 001039 990 IWDIR----AGRQMHKFLG---HTKWIR--SIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHA-GPVQCV-EYSS 1056 (1179)
Q Consensus 990 iwD~~----~~~~~~~~~~---~~~~I~--sl~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~V~~l-~~sp 1056 (1179)
|||.. .-.+...+.. +..+++ ...|+++ ++++|-.-..|-++|-..++.+..+.... ..|.++ .|+|
T Consensus 395 v~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP 474 (498)
T KOG4328|consen 395 VFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHP 474 (498)
T ss_pred EeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecc
Confidence 99983 2233333321 112222 3456665 88899888999999988888777754332 356665 7999
Q ss_pred CCCEEEE-EeCCCcEEEEEcCC
Q 001039 1057 SDRGIIT-GSSDGLLRFWENDD 1077 (1179)
Q Consensus 1057 dg~~l~s-gs~Dg~I~iwd~~~ 1077 (1179)
-+..+++ |+..|.|+||--+.
T Consensus 475 ~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 475 MRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred cccceeccCCccceEEEEecCC
Confidence 8885555 45678899886543
No 163
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.79 E-value=8.2e-16 Score=181.42 Aligned_cols=326 Identities=26% Similarity=0.531 Sum_probs=246.1
Q ss_pred EEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccc-cEE--EE-ecCCC-EE
Q 001039 822 IIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTR-TVR--AI-NSDRG-KV 896 (1179)
Q Consensus 822 ~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~-~v~--~~-s~d~~-~l 896 (1179)
.+.+|...|.++.+. +++..++.++.|+.+.+|+..... .....+.++.. .+. .+ ++++. .+
T Consensus 60 ~~~~~~~~i~~~~~~------------~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (466)
T COG2319 60 LLRGHEDSITSIAFS------------PDGELLLSGSSDGTIKLWDLDNGE-KLIKSLEGLHDSSVSKLALSSPDGNSIL 126 (466)
T ss_pred eeeeccceEEEEEEC------------CCCcEEEEecCCCcEEEEEcCCCc-eeEEEEeccCCCceeeEEEECCCcceEE
Confidence 567899999999997 789999999999999999976322 24455555332 333 23 56676 45
Q ss_pred EEEeC-CCcEEEEECCC-CeEEEEeecCCCcEEEEEEeC-CCEEEEEEc-CCeEEEEeCCCCeEEEEeccCCCcEEEEEE
Q 001039 897 VSGSD-DQSVLVWDKQT-SQLLEELKGHDAQVSCVRMLS-GERVLTASH-DGTVKMWDVRTDTCVATVGRCSSAVLCMEY 972 (1179)
Q Consensus 897 ~sgs~-dg~I~iwd~~t-~~~~~~~~~h~~~V~~l~~s~-~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~ 972 (1179)
+..+. |+.+.+||... ......+..|...|..+.|++ +..+++++. |+.+++|+..++..+..+..|...+.+++|
T Consensus 127 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 206 (466)
T COG2319 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAF 206 (466)
T ss_pred eccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEE
Confidence 55444 99999999998 788889999999999999994 557777775 999999999998899999889999999999
Q ss_pred cCCCC-EEEEEeCCCeEEEEeCCCCceeE-EeecCCCCe-EEEEEcCCEEEEEeCCCcEEEEEccCCee-eEEeecCCcC
Q 001039 973 DDSTG-ILAAGGRDAVANIWDIRAGRQMH-KFLGHTKWI-RSIRMDRDTVITGSDDWTARMWSISRGTC-DAVLACHAGP 1048 (1179)
Q Consensus 973 sp~~~-~l~sgs~dg~I~iwD~~~~~~~~-~~~~~~~~I-~sl~~~~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~h~~~ 1048 (1179)
+|++. .+++++.|+.+++||...+.... .+.+|.... ..+..++..+++++.|+.+++||...... ...+..|...
T Consensus 207 ~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 286 (466)
T COG2319 207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS 286 (466)
T ss_pred cCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCcc
Confidence 99998 55555899999999999888887 688887773 33333456888999999999999987664 4444678899
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEec--CCCEEEEE-ECCCcEEEEeCCCCCcCc
Q 001039 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINA--GDHWLGIG-AADNSMSLFHRPQERLGG 1125 (1179)
Q Consensus 1049 V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~--dg~~lasg-s~Dg~I~iwd~~~~~~~~ 1125 (1179)
+.++.|+|++..+++++.|+.+.+||..+........ ...|...+..+.. ++..++.+ ..|+.+.+|+.....
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--- 362 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK--- 362 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---
Confidence 9999999999999999999999999888743222222 2356655555432 32455555 688999999987431
Q ss_pred ccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEE-EeCCCcEEEEECCCC
Q 001039 1126 FSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICS-GGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1126 ~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Las-gs~Dg~I~vWdv~tg 1178 (1179)
........ ..+..+.+++ ....++ ++.++.+.+|+...+
T Consensus 363 ------------~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 402 (466)
T COG2319 363 ------------PLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTG 402 (466)
T ss_pred ------------eeEEecCC-ceEEEEEECC-CCCEEEEecCCCceEEEecccC
Confidence 01111111 1188899988 544444 789999999998764
No 164
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.79 E-value=7.7e-18 Score=183.41 Aligned_cols=288 Identities=14% Similarity=0.214 Sum_probs=211.7
Q ss_pred eEEEeccccccEEE--EecCC--CEEEEEeCCCcEEEEECCCC----eEEEEeecCCCcEEEEEEe--CCCEEEEEEcCC
Q 001039 875 LRATLKGHTRTVRA--INSDR--GKVVSGSDDQSVLVWDKQTS----QLLEELKGHDAQVSCVRML--SGERVLTASHDG 944 (1179)
Q Consensus 875 ~~~~l~~h~~~v~~--~s~d~--~~l~sgs~dg~I~iwd~~t~----~~~~~~~~h~~~V~~l~~s--~~~~l~sgs~dg 944 (1179)
.....+-+.+.|++ |+|.. +.+++|...|+|-+||+.+. .-+..+..|..+|.++.|+ +...+++.|.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 33455667777775 56643 57889999999999999532 2355678899999999999 567899999999
Q ss_pred eEEEEeCCCCeEE--EEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce-eEEeecCCCCeEEEEEcC---CE
Q 001039 945 TVKMWDVRTDTCV--ATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ-MHKFLGHTKWIRSIRMDR---DT 1018 (1179)
Q Consensus 945 ~I~iwd~~~~~~~--~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~-~~~~~~~~~~I~sl~~~~---~~ 1018 (1179)
+|++-|++++..- .........+.++.++.+...++.|+.=|...+||.+++.. ...+..|...|.+++++| .+
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 9999999876533 33333556778888988888888888888999999998765 566778888999999965 48
Q ss_pred EEEEeCCCcEEEEEccCCee----eEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcC----CCCcceEEEeeccc
Q 001039 1019 VITGSDDWTARMWSISRGTC----DAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEND----DAGGIKCVKNVTIH 1090 (1179)
Q Consensus 1019 l~sgs~dg~I~iwd~~~~~~----~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~----~~~~~~~~~~~~~h 1090 (1179)
+++++.|++.+|||++.-.. .-....|...|.+..|||++..|+|.+.|..|+|||.. .......+..-..+
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t 417 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRT 417 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcc
Confidence 99999999999999986432 22334599999999999999889999999999999984 21112222211112
Q ss_pred CceE----EEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecC-CCcccEEEE-EEcCCCCEEEEE
Q 001039 1091 SSAI----LSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQ-KTVAVVRCI-ASDLERKRICSG 1164 (1179)
Q Consensus 1091 ~~~i----~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~-~h~~~V~~v-~fspdg~~Lasg 1164 (1179)
..++ ..+.|+..++++|-.-..|-|+|-..++ .+..+. .....|.++ .|+|-+..+++|
T Consensus 418 ~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q---------------~v~el~~P~~~tI~~vn~~HP~~~~~~aG 482 (498)
T KOG4328|consen 418 GRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ---------------MVCELHDPESSTIPSVNEFHPMRDTLAAG 482 (498)
T ss_pred cccccchhheeCCCccEEEEeccCcceeEEcCCCCE---------------EeeeccCccccccccceeecccccceecc
Confidence 2222 2337899999999999999999987543 222211 112234443 599988855554
Q ss_pred -eCCCcEEEEECCC
Q 001039 1165 -GRNGLLRLWEATI 1177 (1179)
Q Consensus 1165 -s~Dg~I~vWdv~t 1177 (1179)
+..|.|+||--+.
T Consensus 483 ~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 483 GNSSGKIYVFTNKK 496 (498)
T ss_pred CCccceEEEEecCC
Confidence 6778999997654
No 165
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=5.3e-18 Score=184.30 Aligned_cols=228 Identities=18% Similarity=0.264 Sum_probs=178.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeE---E------------------EEeecCCCcEEEEEEe--CCCEEEEEEcCCeEEE
Q 001039 892 DRGKVVSGSDDQSVLVWDKQTSQL---L------------------EELKGHDAQVSCVRML--SGERVLTASHDGTVKM 948 (1179)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~~~---~------------------~~~~~h~~~V~~l~~s--~~~~l~sgs~dg~I~i 948 (1179)
.|+++|.|+.|..|.|||+.-... . ..-.+|+..|..++|+ -.+.|++||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 468999999999999999853110 0 0123688888899888 4678999999999999
Q ss_pred EeCCCCeEEEEeccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC---CEEEEEeC
Q 001039 949 WDVRTDTCVATVGRCSSAVLCMEYDD-STGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR---DTVITGSD 1024 (1179)
Q Consensus 949 wd~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~---~~l~sgs~ 1024 (1179)
||+.++++..++..|.+.|.++.|+| ...+|++|+.|+++.+.|.|........-.-.+.|-.++|++ ..++++..
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence 99999999999999999999999999 567899999999999999996444333334456788899954 58999999
Q ss_pred CCcEEEEEccCC-eeeEEeecCCcCEEEEEEecCC-CEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEe--cC
Q 001039 1025 DWTARMWSISRG-TCDAVLACHAGPVQCVEYSSSD-RGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSIN--AG 1100 (1179)
Q Consensus 1025 dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~spdg-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis--~d 1100 (1179)
||+|+-+|+++. +++.++++|.++|.++++++.- ..+++++.|+.|++|++..... +.+..-...-+...|++ |+
T Consensus 351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~~~~~~rl~c~~~~~~ 429 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEHSFKLGRLHCFALDPD 429 (463)
T ss_pred CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccccccccccceeecccCCC
Confidence 999999999875 8999999999999999998864 4688999999999999987432 22211111111233443 33
Q ss_pred -CCEEEEEECCCcEEEEeCCC
Q 001039 1101 -DHWLGIGAADNSMSLFHRPQ 1120 (1179)
Q Consensus 1101 -g~~lasgs~Dg~I~iwd~~~ 1120 (1179)
.-++|.|+..+.++|||+.+
T Consensus 430 ~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 430 VAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred cceEEEecCccceEEEeeccc
Confidence 35778888888999999874
No 166
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.78 E-value=1.7e-17 Score=176.64 Aligned_cols=243 Identities=22% Similarity=0.368 Sum_probs=187.7
Q ss_pred eEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCC--------------CCCceeEEEecccccc
Q 001039 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPS--------------LRGSELRATLKGHTRT 885 (1179)
Q Consensus 820 ~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~--------------~~~~~~~~~l~~h~~~ 885 (1179)
-...-+|.+.|+.+..++. ++..+.|+-+..|.|+||++. ......+.++.+|...
T Consensus 144 ~~~~i~h~g~~NRvr~~~~----------~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~E 213 (440)
T KOG0302|consen 144 EMKSIPHYGGINRVRVSRL----------GNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGE 213 (440)
T ss_pred cccccccccccceeeeccc----------CCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCcc
Confidence 3455679999999887631 356678888999999999964 1123456777888766
Q ss_pred EEE--EecC-CCEEEEEeCCCcEEEEECCCCeEE---EEeecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCC---
Q 001039 886 VRA--INSD-RGKVVSGSDDQSVLVWDKQTSQLL---EELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTD--- 954 (1179)
Q Consensus 886 v~~--~s~d-~~~l~sgs~dg~I~iwd~~t~~~~---~~~~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~--- 954 (1179)
=.+ +||- ...+++|..-+.|++|...+|.-. ..+.+|+..|-.++|+ ..+.+++||.||+|+|||++.+
T Consensus 214 Gy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~ 293 (440)
T KOG0302|consen 214 GYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK 293 (440)
T ss_pred ceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc
Confidence 554 4552 345888888899999999887543 3467899999999999 4678999999999999999998
Q ss_pred eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CceeEEeecCCCCeEEEEEcC---CEEEEEeCCCcE
Q 001039 955 TCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRA---GRQMHKFLGHTKWIRSIRMDR---DTVITGSDDWTA 1028 (1179)
Q Consensus 955 ~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~---~~~~~~~~~~~~~I~sl~~~~---~~l~sgs~dg~I 1028 (1179)
.++.+ +.|.+.|+.+.|+....+||+|+.||+++|||+|+ ++++..++-|..+|+++.|++ ..+++++.|..|
T Consensus 294 ~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qi 372 (440)
T KOG0302|consen 294 AAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQI 372 (440)
T ss_pred ceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcE
Confidence 34444 78999999999999988999999999999999986 567889999999999999985 489999999999
Q ss_pred EEEEccCCee----------------eEEeecC--CcCEEEEEEecCC-CEEEEEeCCCcEEEEE
Q 001039 1029 RMWSISRGTC----------------DAVLACH--AGPVQCVEYSSSD-RGIITGSSDGLLRFWE 1074 (1179)
Q Consensus 1029 ~iwd~~~~~~----------------~~~~~~h--~~~V~~l~~spdg-~~l~sgs~Dg~I~iwd 1074 (1179)
.+||+.--.. .+.+--| ...+..+.|+++- .++++.+.|| +.||.
T Consensus 373 tiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 373 TIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred EEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 9999853211 0111123 3457788888863 4677777888 55553
No 167
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.1e-17 Score=171.76 Aligned_cols=272 Identities=15% Similarity=0.177 Sum_probs=201.2
Q ss_pred eEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEE
Q 001039 830 ITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLV 907 (1179)
Q Consensus 830 V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~i 907 (1179)
-.|+.|+ +.|.+||+|+.||.|.|||+. +......+.+|..+|.+ +|+||+.|++++.|..|.+
T Consensus 26 a~~~~Fs------------~~G~~lAvGc~nG~vvI~D~~--T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~l 91 (405)
T KOG1273|consen 26 AECCQFS------------RWGDYLAVGCANGRVVIYDFD--TFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKL 91 (405)
T ss_pred cceEEec------------cCcceeeeeccCCcEEEEEcc--ccchhhhhhccccceeEEEecCCCCEeeeecCCceeEE
Confidence 5777777 899999999999999999976 45566788999999985 5899999999999999999
Q ss_pred EECCCCeEEEEeecCCCcEEEEEEeC--CCEEEEEEcCCeEEEEeCCCCeEEEEeccC----CCcEEEEEEcCCCCEEEE
Q 001039 908 WDKQTSQLLEELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRTDTCVATVGRC----SSAVLCMEYDDSTGILAA 981 (1179)
Q Consensus 908 wd~~t~~~~~~~~~h~~~V~~l~~s~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~----~~~v~~l~~sp~~~~l~s 981 (1179)
||+..|.+++.+. ..++|+.+.|++ .+.+++.-.+..-.+-++..++....-... +....+..|++.|+++++
T Consensus 92 wDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIit 170 (405)
T KOG1273|consen 92 WDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIIT 170 (405)
T ss_pred EeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEE
Confidence 9999999998887 578999999994 445555544444555555443221111111 122334468999999999
Q ss_pred EeCCCeEEEEeCCCCceeEEeecCC-CCeEEEEE--cCCEEEEEeCCCcEEEEEccCC-------eee--EEee--cCCc
Q 001039 982 GGRDAVANIWDIRAGRQMHKFLGHT-KWIRSIRM--DRDTVITGSDDWTARMWSISRG-------TCD--AVLA--CHAG 1047 (1179)
Q Consensus 982 gs~dg~I~iwD~~~~~~~~~~~~~~-~~I~sl~~--~~~~l~sgs~dg~I~iwd~~~~-------~~~--~~~~--~h~~ 1047 (1179)
|...|.+.++|..+.+++..++-.. ..|.++.+ .++.++.-+.|+.||.|+++.- +.. +.+. -...
T Consensus 171 GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~ 250 (405)
T KOG1273|consen 171 GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL 250 (405)
T ss_pred ecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh
Confidence 9999999999999999998887665 67777766 6789999999999999998631 111 1111 0122
Q ss_pred CEEEEEEecCCCEEEEEeC-CCcEEEEEcCCCCcceEEEeecccCc-eEEEE--ecCCCEEEEEECCCcEEEEeCCC
Q 001039 1048 PVQCVEYSSSDRGIITGSS-DGLLRFWENDDAGGIKCVKNVTIHSS-AILSI--NAGDHWLGIGAADNSMSLFHRPQ 1120 (1179)
Q Consensus 1048 ~V~~l~~spdg~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~h~~-~i~si--s~dg~~lasgs~Dg~I~iwd~~~ 1120 (1179)
.=.+++||.+|.|+++|+. ...++||.... +..++.+.|..+ ....+ +|-...+++- ..|.+++|....
T Consensus 251 ~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~---GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 251 QWKKCCFSGDGEYVCAGSARAHALYIWEKSI---GSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred hhhheeecCCccEEEeccccceeEEEEecCC---cceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeec
Confidence 3457899999999988874 45699999888 455555656553 33444 5555666666 679999998753
No 168
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.78 E-value=4.1e-18 Score=173.33 Aligned_cols=283 Identities=15% Similarity=0.209 Sum_probs=202.3
Q ss_pred eEEEeccccccEEEEe-cCCCEEEEEeCCCcEEEEECCCCeEEEEee-cCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCC
Q 001039 875 LRATLKGHTRTVRAIN-SDRGKVVSGSDDQSVLVWDKQTSQLLEELK-GHDAQVSCVRMLSGERVLTASHDGTVKMWDVR 952 (1179)
Q Consensus 875 ~~~~l~~h~~~v~~~s-~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~-~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~ 952 (1179)
....+.+|.+.++++. ..+.+|.+|...|.|++|++++.+....++ .+...|+.+...+++.+.+-+.|+.+.+|++.
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIA 85 (323)
T ss_pred CeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEcc
Confidence 3466779999999874 345679999999999999999998888888 56778888887788999999999999999998
Q ss_pred CCeEEEEeccCCCcEEEEEEcC-----CCC----EEEEEeCC-CeEEEEeCCCCceeEEe----ecCCCCeEEEEEc---
Q 001039 953 TDTCVATVGRCSSAVLCMEYDD-----STG----ILAAGGRD-AVANIWDIRAGRQMHKF----LGHTKWIRSIRMD--- 1015 (1179)
Q Consensus 953 ~~~~~~~~~~~~~~v~~l~~sp-----~~~----~l~sgs~d-g~I~iwD~~~~~~~~~~----~~~~~~I~sl~~~--- 1015 (1179)
-+..+..- .-.+.++.|.+ +++ .++.-+.. ..+.+-|......+... .+..+.+.+..++
T Consensus 86 ~s~~i~i~---Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c 162 (323)
T KOG0322|consen 86 YSAFISIH---SIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC 162 (323)
T ss_pred CcceEEEe---eeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccc
Confidence 75543321 22333333332 211 11111100 01222232222222111 1344567777763
Q ss_pred CC--EEEEEeCCCcEEEEEccCCee----------eEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCC-cce
Q 001039 1016 RD--TVITGSDDWTARMWSISRGTC----------DAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAG-GIK 1082 (1179)
Q Consensus 1016 ~~--~l~sgs~dg~I~iwd~~~~~~----------~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~-~~~ 1082 (1179)
+. .+++|.++|.+.+||+.++.. ......|..+|.++.+.+....=++|+.+..+..|+++... ...
T Consensus 163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq 242 (323)
T KOG0322|consen 163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQ 242 (323)
T ss_pred cceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccc
Confidence 22 788899999999999999733 33345689999999999877777888888899999987642 111
Q ss_pred --EEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCE
Q 001039 1083 --CVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKR 1160 (1179)
Q Consensus 1083 --~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 1160 (1179)
....++.....-..+.||++.+|++++|+.||||+..+. ..+..+..|.+.|++++|+||...
T Consensus 243 ~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl---------------~pLAVLkyHsagvn~vAfspd~~l 307 (323)
T KOG0322|consen 243 IRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL---------------NPLAVLKYHSAGVNAVAFSPDCEL 307 (323)
T ss_pred ccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC---------------CchhhhhhhhcceeEEEeCCCCch
Confidence 122233333334667899999999999999999999833 566778899999999999999999
Q ss_pred EEEEeCCCcEEEEEC
Q 001039 1161 ICSGGRNGLLRLWEA 1175 (1179)
Q Consensus 1161 Lasgs~Dg~I~vWdv 1175 (1179)
+|++|.|++|-+|++
T Consensus 308 mAaaskD~rISLWkL 322 (323)
T KOG0322|consen 308 MAAASKDARISLWKL 322 (323)
T ss_pred hhhccCCceEEeeec
Confidence 999999999999986
No 169
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.78 E-value=3.7e-17 Score=175.93 Aligned_cols=290 Identities=17% Similarity=0.234 Sum_probs=214.2
Q ss_pred CcceEEEEEccCCC-ceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecc
Q 001039 768 GRSWVQSMFSREAS-SRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDL 844 (1179)
Q Consensus 768 ~~~i~~~~fSpdg~-~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~ 844 (1179)
+++|..+.|.+++. .+|||+.| ||+|-+..+...+.. ..-.-+..|..|..+|+++.|+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~-------- 74 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFS-------- 74 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEc--------
Confidence 47788889999887 99999999 999999877643311 1112456789999999999998
Q ss_pred ccccCCCCEEEEEeCCCcEEEEcCC--------------CCCceeEEEeccccccEE--EEecCCCEEEEEeCCCcEEEE
Q 001039 845 VGDREDAGFFISGSTDCLVKIWDPS--------------LRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVW 908 (1179)
Q Consensus 845 ~~~s~d~~~Lasgs~Dg~I~lWd~~--------------~~~~~~~~~l~~h~~~v~--~~s~d~~~l~sgs~dg~I~iw 908 (1179)
|+|+.||||+++|.|.+|... .........+.+|...+. ++++++.++++++.|..+++|
T Consensus 75 ----p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~ 150 (434)
T KOG1009|consen 75 ----PDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLW 150 (434)
T ss_pred ----CCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEE
Confidence 899999999999999999854 112345567888998888 679999999999999999999
Q ss_pred ECCCCeEEEEeecCCCcEEEEEEeC-CCEEEEEEcCCeEEEEeCCCCeEEEEec--------c-----------C----C
Q 001039 909 DKQTSQLLEELKGHDAQVSCVRMLS-GERVLTASHDGTVKMWDVRTDTCVATVG--------R-----------C----S 964 (1179)
Q Consensus 909 d~~t~~~~~~~~~h~~~V~~l~~s~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~--------~-----------~----~ 964 (1179)
|+..|+....+..|...+..++|.+ ++++++-+.|...+.+++...+.+.... . | .
T Consensus 151 Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlk 230 (434)
T KOG1009|consen 151 DVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLK 230 (434)
T ss_pred EeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchh
Confidence 9999999999999999999999984 7788888888877776665433222111 0 1 1
Q ss_pred CcEEEEEEcCCCCEEEEEeC----CCe-----EEEEeCCC-CceeEEeecCCCCeEEEEEcC------------------
Q 001039 965 SAVLCMEYDDSTGILAAGGR----DAV-----ANIWDIRA-GRQMHKFLGHTKWIRSIRMDR------------------ 1016 (1179)
Q Consensus 965 ~~v~~l~~sp~~~~l~sgs~----dg~-----I~iwD~~~-~~~~~~~~~~~~~I~sl~~~~------------------ 1016 (1179)
.-...++|+|+|..+++... .+. .++++-.. .++...+.+.......+.+++
T Consensus 231 sFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lp 310 (434)
T KOG1009|consen 231 SFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLP 310 (434)
T ss_pred hhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccc
Confidence 22456889999999887542 222 23443222 223344444444444444321
Q ss_pred -CEEEEEeCCCcEEEEEccCCeeeEEee-cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 001039 1017 -DTVITGSDDWTARMWSISRGTCDAVLA-CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAG 1079 (1179)
Q Consensus 1017 -~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~ 1079 (1179)
..+++......|++||.++..+..... -|-..|+.++|++||..++..|.||...+-.++..+
T Consensus 311 yrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 311 YRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred cceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 123333345689999999887776654 488999999999999999999999998888777744
No 170
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=8.9e-17 Score=179.74 Aligned_cols=153 Identities=14% Similarity=0.313 Sum_probs=116.2
Q ss_pred CeEEEEEc---CCEEEEEeCCCcEEEEEccCC-------eeeEEeecCCcCEEEEEEecC-CCEEEEEeCCCcEEEEEcC
Q 001039 1008 WIRSIRMD---RDTVITGSDDWTARMWSISRG-------TCDAVLACHAGPVQCVEYSSS-DRGIITGSSDGLLRFWEND 1076 (1179)
Q Consensus 1008 ~I~sl~~~---~~~l~sgs~dg~I~iwd~~~~-------~~~~~~~~h~~~V~~l~~spd-g~~l~sgs~Dg~I~iwd~~ 1076 (1179)
.|+.+.|+ ...+++++.||.|++|.+..+ ++...+..|...|+++.|+|- .+.|++++.|.+|++||+.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 35666674 358999999999999998653 456678899999999999994 5678999999999999999
Q ss_pred CCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEE
Q 001039 1077 DAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIAS 1154 (1179)
Q Consensus 1077 ~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~f 1154 (1179)
+ ......+.+|+..|.++ ||+|+.+|+.+.||+|++|+..........+.| ..+ ..-..+.|
T Consensus 709 ~---~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~g-----------pvg--tRgARi~w 772 (1012)
T KOG1445|consen 709 N---AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKG-----------PVG--TRGARILW 772 (1012)
T ss_pred h---hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCC-----------Ccc--CcceeEEE
Confidence 8 55666788999999766 899999999999999999998754322222111 111 22234667
Q ss_pred cCCCCEEEEEeCCC----cEEEEECC
Q 001039 1155 DLERKRICSGGRNG----LLRLWEAT 1176 (1179)
Q Consensus 1155 spdg~~Lasgs~Dg----~I~vWdv~ 1176 (1179)
--||++++..|.|. .|.+||.+
T Consensus 773 acdgr~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 773 ACDGRIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred EecCcEEEEecccccchhhhhhhhhh
Confidence 78999988887664 46666654
No 171
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.77 E-value=1.7e-17 Score=186.39 Aligned_cols=267 Identities=15% Similarity=0.261 Sum_probs=208.9
Q ss_pred ceEEEEEccCCCceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecccccc
Q 001039 770 SWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDR 848 (1179)
Q Consensus 770 ~i~~~~fSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s 848 (1179)
.|..++|-|||+.++.+.++ +.++|...|. .+++++||++.|+|++|+
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~-------------------llqtLKgHKDtVycVAys------------ 62 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGT-------------------LLQPLKGHKDTVYCVAYA------------ 62 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcc-------------------cccccccccceEEEEEEc------------
Confidence 67788999999988777777 9999999888 788999999999999998
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcE
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQV 926 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V 926 (1179)
.||+.+|||+.|..|.+|+.... +.+ . -.|.+.|.|+ +|-...+++++-. ..-+|..+.....+ .+ ....+
T Consensus 63 ~dGkrFASG~aDK~VI~W~~klE-G~L--k-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K-~k-ss~R~ 135 (1081)
T KOG1538|consen 63 KDGKRFASGSADKSVIIWTSKLE-GIL--K-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK-HK-SSSRI 135 (1081)
T ss_pred cCCceeccCCCceeEEEeccccc-cee--e-eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh-hh-hheeE
Confidence 89999999999999999995421 211 1 2488888876 5777889988764 46789876543322 11 24567
Q ss_pred EEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEe---ccCCCcEEEEEEcCCC-----CEEEEEeCCCeEEEEeCCCCc
Q 001039 927 SCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV---GRCSSAVLCMEYDDST-----GILAAGGRDAVANIWDIRAGR 997 (1179)
Q Consensus 927 ~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~---~~~~~~v~~l~~sp~~-----~~l~sgs~dg~I~iwD~~~~~ 997 (1179)
.+.+|. +|.+++.|-.||+|.+-+- +|+....+ .+.+++|.+++|+|.. ..+++...+.++..+.+. |+
T Consensus 136 ~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~ 213 (1081)
T KOG1538|consen 136 ICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GK 213 (1081)
T ss_pred EEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ce
Confidence 788888 8999999999999999874 44443333 3478899999999953 467788888888888764 44
Q ss_pred eeEEeecCCCCeEEEEE--cCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEc
Q 001039 998 QMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEN 1075 (1179)
Q Consensus 998 ~~~~~~~~~~~I~sl~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~ 1075 (1179)
.+.+-+.-.-...|+.+ +|++++.|+.|+.+.+|. +.|-.+.++...+.+|+.++..|++++++.|+.||+|..|++
T Consensus 214 ~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 214 QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred eecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 44432222223345555 788999999999999997 678888888778899999999999999999999999999986
Q ss_pred CC
Q 001039 1076 DD 1077 (1179)
Q Consensus 1076 ~~ 1077 (1179)
-.
T Consensus 293 ~f 294 (1081)
T KOG1538|consen 293 IF 294 (1081)
T ss_pred HH
Confidence 53
No 172
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=3.5e-17 Score=170.81 Aligned_cols=281 Identities=16% Similarity=0.248 Sum_probs=207.9
Q ss_pred EEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCC
Q 001039 773 QSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDRED 850 (1179)
Q Consensus 773 ~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d 850 (1179)
.+.|||||+.+++.+.| +++|++......... ......+....++... .+.|..-+|-+. +-...|+
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~----~~~~~~~~~~~~r~~e--g~tvydy~wYs~-----M~s~qP~ 122 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKA----DGPLNFSKHLSYRYQE--GETVYDYCWYSR-----MKSDQPS 122 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCC----CCccccccceeEEecc--CCEEEEEEeeec-----cccCCCc
Confidence 36999999999999888 999998753311100 0000011112222222 356788887643 2344589
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeEEEecc--ccccEE-----EEecCCCEEEEEeCCCcEEEEEC-CCCeEEE---Ee
Q 001039 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKG--HTRTVR-----AINSDRGKVVSGSDDQSVLVWDK-QTSQLLE---EL 919 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~--h~~~v~-----~~s~d~~~l~sgs~dg~I~iwd~-~t~~~~~---~~ 919 (1179)
..++|+.+.|.-|++||.- ++++...+.+ |...++ +|++||.+|++|. ...|+++|+ +.|+.-. ++
T Consensus 123 t~l~a~ssr~~PIh~wdaf--tG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 123 TNLFAVSSRDQPIHLWDAF--TGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred cceeeeccccCceeeeecc--ccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhh
Confidence 9999999999999999965 4444444443 444443 6799999999876 578999999 4453211 11
Q ss_pred ----ecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEe
Q 001039 920 ----KGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGR-DAVANIWD 992 (1179)
Q Consensus 920 ----~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~-dg~I~iwD 992 (1179)
.+..+.+.+++++ +...+++|+....+-||.-..+.++..+.+|.+.|+.+.|.++|+.+++|.. |-.|..||
T Consensus 200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WD 279 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWD 279 (406)
T ss_pred hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence 2346778999999 4568999999999999999999999999999999999999999999999874 67899999
Q ss_pred CCCC-ceeEEeecCCC-CeEEEEE----cCCEEEEEeCCCcEEEEEccC-CeeeEEeecCCcCEEEEEEecCCCEEEEEe
Q 001039 993 IRAG-RQMHKFLGHTK-WIRSIRM----DRDTVITGSDDWTARMWSISR-GTCDAVLACHAGPVQCVEYSSSDRGIITGS 1065 (1179)
Q Consensus 993 ~~~~-~~~~~~~~~~~-~I~sl~~----~~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~~~V~~l~~spdg~~l~sgs 1065 (1179)
+|.. .++..+..|.. .-..|-| .++.|++|+.||.|++||+++ |..+..+..+...++.++++|--.++++++
T Consensus 280 iR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 280 IRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred ehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence 9964 45556665554 2223333 567999999999999999998 777888888999999999999988888776
Q ss_pred CC
Q 001039 1066 SD 1067 (1179)
Q Consensus 1066 ~D 1067 (1179)
..
T Consensus 360 Gq 361 (406)
T KOG2919|consen 360 GQ 361 (406)
T ss_pred Cc
Confidence 54
No 173
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.76 E-value=3.4e-17 Score=174.28 Aligned_cols=250 Identities=19% Similarity=0.306 Sum_probs=180.6
Q ss_pred cccCCcceEEEEEccCCCceeec--cCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeeccc
Q 001039 764 ASGIGRSWVQSMFSREASSRSHS--FSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1179)
Q Consensus 764 ~~gh~~~i~~~~fSpdg~~las~--~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~ 839 (1179)
..+|...+..+.-++-|+-.+++ +.. |.||++...-..-. ........+...++.++.+|.+.=++++|||
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~---~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp-- 221 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALS---EPGLEVKDSEFRPLFTFNGHKGEGYGLDWSP-- 221 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhc---CccccccccccCceEEecccCccceeeeccc--
Confidence 45666777666555554332222 222 89999874321110 1111112244568999999999999999996
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeE-EEeccccccEEE--Eec-CCCEEEEEeCCCcEEEEECCCC--
Q 001039 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELR-ATLKGHTRTVRA--INS-DRGKVVSGSDDQSVLVWDKQTS-- 913 (1179)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~-~~l~~h~~~v~~--~s~-d~~~l~sgs~dg~I~iwd~~t~-- 913 (1179)
-....|+||..-+.|++|....+....- ..+.+|+..|-. +|| ..+.+++|+.||+|+|||++.+
T Consensus 222 ---------~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 222 ---------IKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK 292 (440)
T ss_pred ---------ccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc
Confidence 2345678888889999999875444332 357789999885 465 4578999999999999999988
Q ss_pred -eEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCC---CeEEEEeccCCCcEEEEEEcC-CCCEEEEEeCCCe
Q 001039 914 -QLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRT---DTCVATVGRCSSAVLCMEYDD-STGILAAGGRDAV 987 (1179)
Q Consensus 914 -~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~---~~~~~~~~~~~~~v~~l~~sp-~~~~l~sgs~dg~ 987 (1179)
.++.+ +.|.+.|+.+.|+ ...+|++|+.||+++|||+++ ++++.+++.|..+|+++.|+| +...+++++.|..
T Consensus 293 ~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Q 371 (440)
T KOG0302|consen 293 KAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQ 371 (440)
T ss_pred cceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCc
Confidence 33433 8899999999999 445899999999999999986 567889999999999999999 4567888899999
Q ss_pred EEEEeCCCCce----------------eEEeecC--CCCeEEEEEc---CCEEEEEeCCCcE
Q 001039 988 ANIWDIRAGRQ----------------MHKFLGH--TKWIRSIRMD---RDTVITGSDDWTA 1028 (1179)
Q Consensus 988 I~iwD~~~~~~----------------~~~~~~~--~~~I~sl~~~---~~~l~sgs~dg~I 1028 (1179)
|.+||+..-.- .+-+--| +..+..+.|+ +.++++.+.||.-
T Consensus 372 itiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 372 ITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFN 433 (440)
T ss_pred EEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccccee
Confidence 99999863211 0111223 3356677885 4588888888843
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.75 E-value=1.2e-16 Score=166.93 Aligned_cols=263 Identities=16% Similarity=0.236 Sum_probs=200.6
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCC------------eEEEEee-cCCCcEEEEEEe--------CCCEEEEEEcCCeE
Q 001039 888 AINSDRGKVVSGSDDQSVLVWDKQTS------------QLLEELK-GHDAQVSCVRML--------SGERVLTASHDGTV 946 (1179)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~t~------------~~~~~~~-~h~~~V~~l~~s--------~~~~l~sgs~dg~I 946 (1179)
.++|||..|++-+.|..+.+|++... +...+++ .....|..-+|- +..++++.+.+.-|
T Consensus 56 kWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PI 135 (406)
T KOG2919|consen 56 KWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPI 135 (406)
T ss_pred eeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCce
Confidence 48999999999999999999987421 0111111 123456665553 35678888999999
Q ss_pred EEEeCCCCeEEEEecc--CC---CcEEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCceeEEe-------ecCCCCeEEEE
Q 001039 947 KMWDVRTDTCVATVGR--CS---SAVLCMEYDDSTGILAAGGRDAVANIWDI-RAGRQMHKF-------LGHTKWIRSIR 1013 (1179)
Q Consensus 947 ~iwd~~~~~~~~~~~~--~~---~~v~~l~~sp~~~~l~sgs~dg~I~iwD~-~~~~~~~~~-------~~~~~~I~sl~ 1013 (1179)
++||.-+|+....+.. |. ....+++|+|||..|++|. ...|+++|+ |.|.....+ .+..+.+.+++
T Consensus 136 h~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a 214 (406)
T KOG2919|consen 136 HLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFA 214 (406)
T ss_pred eeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeee
Confidence 9999999998877654 22 2457899999999998875 579999999 665432211 23456788888
Q ss_pred EcC---CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeC-CCcEEEEEcCCCCcceEEEeecc
Q 001039 1014 MDR---DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSS-DGLLRFWENDDAGGIKCVKNVTI 1089 (1179)
Q Consensus 1014 ~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~ 1089 (1179)
++| ..+++|+...++-||.-..+.++..+-+|.+.|+.++|.++|+.|.+|+. |..|..||++..+ ..+..+..
T Consensus 215 ~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~--~pv~~L~r 292 (406)
T KOG2919|consen 215 FSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR--DPVYALER 292 (406)
T ss_pred ccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--chhhhhhh
Confidence 865 48999999999999998899999999999999999999999999999984 7789999999743 33333434
Q ss_pred cCc----eE-EEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEE
Q 001039 1090 HSS----AI-LSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSG 1164 (1179)
Q Consensus 1090 h~~----~i-~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasg 1164 (1179)
|.. .| ..+.|++++||+|+.||.|++||++.. | ........|+..++.|+++|--.++|++
T Consensus 293 hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~--------g------n~~sv~~~~sd~vNgvslnP~mpilats 358 (406)
T KOG2919|consen 293 HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL--------G------NEVSVTGNYSDTVNGVSLNPIMPILATS 358 (406)
T ss_pred hccCccceEEEecCCCCceeeccCCCccEEEEecCCC--------C------CcccccccccccccceecCcccceeeec
Confidence 433 33 566899999999999999999999741 2 2233455788889999999998888887
Q ss_pred eCC
Q 001039 1165 GRN 1167 (1179)
Q Consensus 1165 s~D 1167 (1179)
+..
T Consensus 359 sGq 361 (406)
T KOG2919|consen 359 SGQ 361 (406)
T ss_pred cCc
Confidence 643
No 175
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.8e-17 Score=171.60 Aligned_cols=274 Identities=24% Similarity=0.406 Sum_probs=200.3
Q ss_pred CEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeC---CCEEEEEEcCCeEEEEeCCCCeEEEEe--ccCC-CcE
Q 001039 894 GKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS---GERVLTASHDGTVKMWDVRTDTCVATV--GRCS-SAV 967 (1179)
Q Consensus 894 ~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~---~~~l~sgs~dg~I~iwd~~~~~~~~~~--~~~~-~~v 967 (1179)
..++++...|.|++||..+++.+..++++...++.+.|.+ .+.+.+|+.||+|++||+++......+ ..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 6788999999999999999999999999999999999983 567899999999999999986554333 3333 567
Q ss_pred EEEEEcCCCCEEEEEe----CCCeEEEEeCCCCce-eEEe-ecCCCCeEEEEEc---CCEEEEEeCCCcEEEEEccCCee
Q 001039 968 LCMEYDDSTGILAAGG----RDAVANIWDIRAGRQ-MHKF-LGHTKWIRSIRMD---RDTVITGSDDWTARMWSISRGTC 1038 (1179)
Q Consensus 968 ~~l~~sp~~~~l~sgs----~dg~I~iwD~~~~~~-~~~~-~~~~~~I~sl~~~---~~~l~sgs~dg~I~iwd~~~~~~ 1038 (1179)
.|++..-.++.+++|+ .+-.+.+||+|..+. +..+ ..|...|+++.|+ +++|++||.||-|.++|++....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 7888777888888886 467899999998877 5554 5799999999994 56999999999999999876532
Q ss_pred ---eEEeecCCcCEEEEEEecCC-CEEEEEeCCCcEEEEEcCCCCcceEEEee--c--------ccCceEEEEec-CCCE
Q 001039 1039 ---DAVLACHAGPVQCVEYSSSD-RGIITGSSDGLLRFWENDDAGGIKCVKNV--T--------IHSSAILSINA-GDHW 1103 (1179)
Q Consensus 1039 ---~~~~~~h~~~V~~l~~spdg-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~--~--------~h~~~i~sis~-dg~~ 1103 (1179)
+...-.|...|.++.|..++ +.|.+-+..++..+|+++.+......... . .-..-|-+.+| ++..
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~ 280 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDT 280 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcce
Confidence 12222477889999998876 45888889999999999885421111100 0 00111222233 3445
Q ss_pred EEEEEC-CCcEEEEeCCCCCcCcccCCCCccccceeeeecC-CCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1104 LGIGAA-DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQ-KTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1104 lasgs~-Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~-~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
.+.++. -|...++-+.... .|+.. +....+. +|...|+++.|...+..+.|||+||.+.+|.+.
T Consensus 281 ~~l~g~~~n~~~~~~~~~~~------s~~~~---~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 281 CALAGTDSNKGTIFPLVDTS------SGSLL---TEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred EEEeccccCceeEEEeeecc------ccccc---CccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 555444 5666666554211 12111 2333444 488889999999999999999999999999953
No 176
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.74 E-value=1.1e-16 Score=167.72 Aligned_cols=285 Identities=14% Similarity=0.270 Sum_probs=207.5
Q ss_pred eccccccEEEE--e----cCC-CEEEEEeCCCcEEEEECCCC---eEEEEee--cCCCcEEEEEEe-C----CCEEEEEE
Q 001039 879 LKGHTRTVRAI--N----SDR-GKVVSGSDDQSVLVWDKQTS---QLLEELK--GHDAQVSCVRML-S----GERVLTAS 941 (1179)
Q Consensus 879 l~~h~~~v~~~--s----~d~-~~l~sgs~dg~I~iwd~~t~---~~~~~~~--~h~~~V~~l~~s-~----~~~l~sgs 941 (1179)
..+|..++..+ . .+. ..++++| ...+.+|+.... +.++.+. .|......++|+ + +-.+++|+
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 34566666643 2 222 3445544 457888876543 2333332 366777888887 2 34688889
Q ss_pred cCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEe---ecCCCCeEEEEEc--
Q 001039 942 HDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS-TGILAAGGRDAVANIWDIRAGRQMHKF---LGHTKWIRSIRMD-- 1015 (1179)
Q Consensus 942 ~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~-~~~l~sgs~dg~I~iwD~~~~~~~~~~---~~~~~~I~sl~~~-- 1015 (1179)
.-|.|++.|+.++++...+.+|...|..+.+.|+ .+++++++.|..|++||+++..++..+ .+|...|.++.|+
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~ 192 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD 192 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence 9999999999999999999999999999999995 478999999999999999999998876 5799999999995
Q ss_pred CCEEEEEeCCCcEEEEEccCCeeeE----------------------------EeecCCcCEEEEEEecCCCEEEEEeCC
Q 001039 1016 RDTVITGSDDWTARMWSISRGTCDA----------------------------VLACHAGPVQCVEYSSSDRGIITGSSD 1067 (1179)
Q Consensus 1016 ~~~l~sgs~dg~I~iwd~~~~~~~~----------------------------~~~~h~~~V~~l~~spdg~~l~sgs~D 1067 (1179)
++++++++.|.++++|++...+... +-.-|...|-|+.|- |+++++-|-+
T Consensus 193 gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksce 270 (385)
T KOG1034|consen 193 GDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCE 270 (385)
T ss_pred CCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccC
Confidence 5699999999999999997422100 112355666666665 6889999999
Q ss_pred CcEEEEEcCC-CC----------cceEEEeecccCceEEE----EecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCc
Q 001039 1068 GLLRFWENDD-AG----------GIKCVKNVTIHSSAILS----INAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSK 1132 (1179)
Q Consensus 1068 g~I~iwd~~~-~~----------~~~~~~~~~~h~~~i~s----is~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~ 1132 (1179)
+.|..|.... .+ ....+..+......++- +.+-+++||.|...|.|.+||+...... .
T Consensus 271 naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~-------~ 343 (385)
T KOG1034|consen 271 NAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP-------K 343 (385)
T ss_pred ceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc-------c
Confidence 9999998721 11 11223333444444433 3577899999999999999999854221 0
Q ss_pred cccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001039 1133 MSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1133 ~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
.. ++ ........|+..+||.||..|+...+||+|.-||.-+
T Consensus 344 ~t--tl--~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 344 CT--TL--THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred Cc--eE--EeccccceeeeeeecccCcEEEEEeCCCcEEEEEeec
Confidence 00 11 1123346799999999999999999999999998643
No 177
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=3e-16 Score=185.25 Aligned_cols=282 Identities=17% Similarity=0.318 Sum_probs=210.4
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecC---CCcEEEEEEe---CCCEEEEEEcCCeEEEEeCCCC-----
Q 001039 886 VRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGH---DAQVSCVRML---SGERVLTASHDGTVKMWDVRTD----- 954 (1179)
Q Consensus 886 v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h---~~~V~~l~~s---~~~~l~sgs~dg~I~iwd~~~~----- 954 (1179)
+..+++-...++++...-.|++||.+.++....+..+ ...|+.+.+. +...+++|+.||.|+||+--..
T Consensus 1069 ~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~ 1148 (1387)
T KOG1517|consen 1069 TLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKP 1148 (1387)
T ss_pred eeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCc
Confidence 3346777888999988889999999999998887654 3568888886 4567999999999999974322
Q ss_pred eEEEEec-------cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee-cCCCCeEEEEE---cCCEEEEEe
Q 001039 955 TCVATVG-------RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFL-GHTKWIRSIRM---DRDTVITGS 1023 (1179)
Q Consensus 955 ~~~~~~~-------~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~-~~~~~I~sl~~---~~~~l~sgs 1023 (1179)
+.+.... +..+.-.-+.|.....+|+++|.-..|+|||......+..+. +....+++++- .++.+++|.
T Consensus 1149 eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGf 1228 (1387)
T KOG1517|consen 1149 ELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGF 1228 (1387)
T ss_pred eeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEee
Confidence 2222221 111222556788777777777778899999999887777664 34457777776 468999999
Q ss_pred CCCcEEEEEccCCe---eeEEeecCCcC--EEEEEEecCCCE-EEEEeCCCcEEEEEcCCCCcceEEEeecccC-----c
Q 001039 1024 DDWTARMWSISRGT---CDAVLACHAGP--VQCVEYSSSDRG-IITGSSDGLLRFWENDDAGGIKCVKNVTIHS-----S 1092 (1179)
Q Consensus 1024 ~dg~I~iwd~~~~~---~~~~~~~h~~~--V~~l~~spdg~~-l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~-----~ 1092 (1179)
.||.|++||.+... .+...+.|... |..+.+.+.|-. |++|+.||.|++||++... .....+...|. .
T Consensus 1229 aDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~-~e~~~~iv~~~~yGs~l 1307 (1387)
T KOG1517|consen 1229 ADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSS-KETFLTIVAHWEYGSAL 1307 (1387)
T ss_pred cCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCc-ccccceeeeccccCccc
Confidence 99999999987653 45667788877 999999987755 9999999999999999842 22222222222 3
Q ss_pred eEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEE
Q 001039 1093 AILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRL 1172 (1179)
Q Consensus 1093 ~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~v 1172 (1179)
..+.++.+...+|+|+. +.|+||++.++++..+...+.- . ....+.+.|++|+|-.-++|.|+.|.+|.|
T Consensus 1308 Tal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F------~---~q~~gs~scL~FHP~~~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1308 TALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGF------M---GQRIGSVSCLAFHPHRLLLAAGSADSTVSI 1377 (1387)
T ss_pred eeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCccc------c---cCcCCCcceeeecchhHhhhhccCCceEEE
Confidence 34555889999999998 9999999987766555543311 1 123355799999999999999999999999
Q ss_pred EECCCC
Q 001039 1173 WEATIN 1178 (1179)
Q Consensus 1173 Wdv~tg 1178 (1179)
|....+
T Consensus 1378 Ys~~k~ 1383 (1387)
T KOG1517|consen 1378 YSCEKP 1383 (1387)
T ss_pred eecCCc
Confidence 987654
No 178
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.73 E-value=2.2e-16 Score=177.55 Aligned_cols=263 Identities=18% Similarity=0.294 Sum_probs=203.0
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCC
Q 001039 887 RAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSS 965 (1179)
Q Consensus 887 ~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~ 965 (1179)
.++.|||..++.+..+ .+.+||...|..+.++++|.+.|.|++|+ +|..+++|+.|..|.+|+..-...+ . ..|.+
T Consensus 18 ~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-k-YSH~D 94 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-K-YSHND 94 (1081)
T ss_pred eEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-e-eccCC
Confidence 3678999998887754 69999999999999999999999999999 8999999999999999985432222 2 26889
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE--cCCEEEEEeCCCcEEEEEccCCeeeEEee
Q 001039 966 AVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLA 1043 (1179)
Q Consensus 966 ~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 1043 (1179)
.|.|+.|+|-...+++++- ...-+|........+ . .....+.+.+| +|.+++.|-.||+|.+-+ .+++....+.
T Consensus 95 ~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~ 170 (1081)
T KOG1538|consen 95 AIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIE 170 (1081)
T ss_pred eeeEeecCchHHHhhhcch-hhccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEEeccCceEEeec-CCCCcceEEe
Confidence 9999999999999998875 346788765443221 1 23346778888 577999999999999987 4455544444
Q ss_pred ---cCCcCEEEEEEecCC-----CEEEEEeCCCcEEEEEcCCCCcceEEEeecc--cCceEEEEecCCCEEEEEECCCcE
Q 001039 1044 ---CHAGPVQCVEYSSSD-----RGIITGSSDGLLRFWENDDAGGIKCVKNVTI--HSSAILSINAGDHWLGIGAADNSM 1113 (1179)
Q Consensus 1044 ---~h~~~V~~l~~spdg-----~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~--h~~~i~sis~dg~~lasgs~Dg~I 1113 (1179)
+.+++|++++|+|.. ..+++.....++.++.++. +.+..-+. ...-..+.-++|.++..|+.|+.+
T Consensus 171 Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L 246 (1081)
T KOG1538|consen 171 RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQL 246 (1081)
T ss_pred CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----eeecccccCCCCchhheeccCCcEEEEccCCCce
Confidence 467899999999963 4677788888888888765 33321111 122233445899999999999999
Q ss_pred EEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1114 SLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1114 ~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
++|..++ ..+.+......+|+.|+..|++++++.|+.||+|..+++.
T Consensus 247 ~~fTR~G----------------vrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 247 SLFTRDG----------------VRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEeecC----------------eEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 9998652 3444455567789999999999999999999999988763
No 179
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.4e-15 Score=151.40 Aligned_cols=276 Identities=16% Similarity=0.252 Sum_probs=196.1
Q ss_pred cceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecccc
Q 001039 769 RSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVG 846 (1179)
Q Consensus 769 ~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~ 846 (1179)
..|..-++||.+++++.|..+ |-+..+.+..... ...+.+..+-..++|.++|+.++|+
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~s---------a~~~gk~~iv~eqahdgpiy~~~f~---------- 71 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGS---------AEPPGKLKIVPEQAHDGPIYYLAFH---------- 71 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccc---------cCCCCCcceeeccccCCCeeeeeee----------
Confidence 345555899999999999888 7777776432110 0112222555669999999999996
Q ss_pred ccCCCCEEEEEeCCCcEEEEcCCCCCc----eeE--EEecccc-----ccEEEE--ecCCCEEEEEeCCCcEEEEECCCC
Q 001039 847 DREDAGFFISGSTDCLVKIWDPSLRGS----ELR--ATLKGHT-----RTVRAI--NSDRGKVVSGSDDQSVLVWDKQTS 913 (1179)
Q Consensus 847 ~s~d~~~Lasgs~Dg~I~lWd~~~~~~----~~~--~~l~~h~-----~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~ 913 (1179)
..+|++|+ ||.|+-|..+.... +.. ....-|. ..|+++ .|..+-++.++.|+.++-||+++|
T Consensus 72 ----d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G 146 (325)
T KOG0649|consen 72 ----DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG 146 (325)
T ss_pred ----hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC
Confidence 56788887 59999998652111 000 1111122 234454 577777778889999999999999
Q ss_pred eEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccC----------CCcEEEEEEcCCCCEEEEE
Q 001039 914 QLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRC----------SSAVLCMEYDDSTGILAAG 982 (1179)
Q Consensus 914 ~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~----------~~~v~~l~~sp~~~~l~sg 982 (1179)
+..+++++|++.+.++.-- ....+++|+.||++++||.++++++..+... ...|-+++. +..++++|
T Consensus 147 ~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCG 224 (325)
T KOG0649|consen 147 RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCG 224 (325)
T ss_pred EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEec
Confidence 9999999999999999884 5778999999999999999999998887432 233555554 55678776
Q ss_pred eCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecC-CCEE
Q 001039 983 GRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSS-DRGI 1061 (1179)
Q Consensus 983 s~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd-g~~l 1061 (1179)
+ ...+.+|.+++.++...+ .-...+..+.|..+.+++++..+.|.-|.+. |.............++..|+.. -+.+
T Consensus 225 g-Gp~lslwhLrsse~t~vf-pipa~v~~v~F~~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~ 301 (325)
T KOG0649|consen 225 G-GPKLSLWHLRSSESTCVF-PIPARVHLVDFVDDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFI 301 (325)
T ss_pred C-CCceeEEeccCCCceEEE-ecccceeEeeeecceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEE
Confidence 5 467999999999888777 4456788889999999999999999999864 5555555544445555555433 2344
Q ss_pred EEEeCCCcEEEE
Q 001039 1062 ITGSSDGLLRFW 1073 (1179)
Q Consensus 1062 ~sgs~Dg~I~iw 1073 (1179)
-.++....+.|+
T Consensus 302 s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 302 SIAGFSNKLHIL 313 (325)
T ss_pred Eecccceeeeee
Confidence 445555556554
No 180
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2.4e-17 Score=198.22 Aligned_cols=228 Identities=19% Similarity=0.333 Sum_probs=186.9
Q ss_pred CEEEEEeCCCcEEEEcCCC----CCceeEEEeccccccEEEE--ecC-CCEEEEEeCCCcEEEEECCCCeEEEEee--cC
Q 001039 852 GFFISGSTDCLVKIWDPSL----RGSELRATLKGHTRTVRAI--NSD-RGKVVSGSDDQSVLVWDKQTSQLLEELK--GH 922 (1179)
Q Consensus 852 ~~Lasgs~Dg~I~lWd~~~----~~~~~~~~l~~h~~~v~~~--s~d-~~~l~sgs~dg~I~iwd~~t~~~~~~~~--~h 922 (1179)
.+||.|..||.|.+||... .....+.+...|++.|..+ ++. ++.|++|+.||.|.|||+..-+.-.+.. ..
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~ 160 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAP 160 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCC
Confidence 4699999999999999753 2234567788899999975 554 5599999999999999998754433331 24
Q ss_pred CCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCC--cEEEEEEcCCC-CEEEEEeCCC---eEEEEeCC
Q 001039 923 DAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSS--AVLCMEYDDST-GILAAGGRDA---VANIWDIR 994 (1179)
Q Consensus 923 ~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~--~v~~l~~sp~~-~~l~sgs~dg---~I~iwD~~ 994 (1179)
.+.|.+++|+ ....|++++.+|.+.|||++..+.+..+..+.. .+..++|+|++ ..+++++.|. .|.+||+|
T Consensus 161 ~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR 240 (1049)
T KOG0307|consen 161 PSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR 240 (1049)
T ss_pred cccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc
Confidence 5789999999 467789999999999999999988877755443 57899999975 3455555443 69999998
Q ss_pred CC-ceeEEeecCCCCeEEEEEc---CCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCC-EEEEEeCCCc
Q 001039 995 AG-RQMHKFLGHTKWIRSIRMD---RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDR-GIITGSSDGL 1069 (1179)
Q Consensus 995 ~~-~~~~~~~~~~~~I~sl~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~-~l~sgs~Dg~ 1069 (1179)
.. .+++.+.+|...|.++.|. +.++++++.|+.|.+|+.++++.+..+....+++..+.|.|... .+++++-||.
T Consensus 241 ~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgk 320 (1049)
T KOG0307|consen 241 FASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGK 320 (1049)
T ss_pred ccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccc
Confidence 64 4677788999999999994 46999999999999999999999999998899999999999776 7888899999
Q ss_pred EEEEEcCCCC
Q 001039 1070 LRFWENDDAG 1079 (1179)
Q Consensus 1070 I~iwd~~~~~ 1079 (1179)
|.|+.+....
T Consensus 321 I~I~sl~~~~ 330 (1049)
T KOG0307|consen 321 ISIYSLQGTD 330 (1049)
T ss_pred eeeeeeecCC
Confidence 9999988743
No 181
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.72 E-value=4e-16 Score=187.23 Aligned_cols=343 Identities=17% Similarity=0.187 Sum_probs=215.4
Q ss_pred cccceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCc-----eeEEEeccccccEE--E
Q 001039 816 IQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGS-----ELRATLKGHTRTVR--A 888 (1179)
Q Consensus 816 ~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~-----~~~~~l~~h~~~v~--~ 888 (1179)
....+..+..|+..|..++.++ +++.+++|||.||+|++||...-.+ ....++......+. .
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~-----------~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt 1105 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSS-----------EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVT 1105 (1431)
T ss_pred cceEeehhhhccccccceeecC-----------CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEE
Confidence 3457788899999999999873 7779999999999999999752111 11222322334444 4
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCC-------eEEEEeecC-CCcEE-EEEEe--CCC-EEEEEEcCCeEEEEeCCCCeE
Q 001039 889 INSDRGKVVSGSDDQSVLVWDKQTS-------QLLEELKGH-DAQVS-CVRML--SGE-RVLTASHDGTVKMWDVRTDTC 956 (1179)
Q Consensus 889 ~s~d~~~l~sgs~dg~I~iwd~~t~-------~~~~~~~~h-~~~V~-~l~~s--~~~-~l~sgs~dg~I~iwd~~~~~~ 956 (1179)
+...++.+|.++.||.|++.+++.. .+.+....+ .+.+. .-++. ... .++.+...+.|..||++....
T Consensus 1106 ~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~ 1185 (1431)
T KOG1240|consen 1106 MCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHD 1185 (1431)
T ss_pred eccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhh
Confidence 5789999999999999999998762 122222222 23333 33444 344 788888899999999998877
Q ss_pred EEEecc--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee-cCCCCeEEEEEc---C--CE-EEEEe-CCC
Q 001039 957 VATVGR--CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFL-GHTKWIRSIRMD---R--DT-VITGS-DDW 1026 (1179)
Q Consensus 957 ~~~~~~--~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~-~~~~~I~sl~~~---~--~~-l~sgs-~dg 1026 (1179)
..+++. ..+.|++++.+|.++++++|+..|.+.+||+|-+.++..+. ++..++..+..+ + .. +.+++ ..+
T Consensus 1186 ~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1186 AWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred HHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCC
Confidence 666543 45789999999999999999999999999999998887764 345677777664 3 23 44444 578
Q ss_pred cEEEEEccCCeeeEEeecCCc-------------------CEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEee
Q 001039 1027 TARMWSISRGTCDAVLACHAG-------------------PVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNV 1087 (1179)
Q Consensus 1027 ~I~iwd~~~~~~~~~~~~h~~-------------------~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~ 1087 (1179)
.|.+|++.+|.+..++...++ .....++...+..+.+|+.|+.|+.||........ ...
T Consensus 1266 evs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss--~~~ 1343 (1431)
T KOG1240|consen 1266 EVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISS--YAV 1343 (1431)
T ss_pred ceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccccc--ccc
Confidence 899999999977666543211 11223333446678999999999999988743111 111
Q ss_pred cccCceEEEEe-cCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCcccc--ceeeeecCCCcccEEEEEEcCC-CCEEEE
Q 001039 1088 TIHSSAILSIN-AGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSG--WQLYRTPQKTVAVVRCIASDLE-RKRICS 1163 (1179)
Q Consensus 1088 ~~h~~~i~sis-~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~--~~~~~~~~~h~~~V~~v~fspd-g~~Las 1163 (1179)
.+........+ ..+..++.|+. .+..+=.. ++.......+..... -........|..+|+++++... ..+|++
T Consensus 1344 ~~~s~~~~~~~~s~~~~~i~~~~--~i~e~i~~-~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs 1420 (1431)
T KOG1240|consen 1344 PGPSTSYSTNSESYDLSTIPGSQ--FIDEFIIY-QQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVS 1420 (1431)
T ss_pred cCccccccccchhccccccCCCc--cchhhhhh-hhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEE
Confidence 12211111111 11112222211 11111000 000000000000000 0011123478899999997654 458999
Q ss_pred EeCCCcEEEEE
Q 001039 1164 GGRNGLLRLWE 1174 (1179)
Q Consensus 1164 gs~Dg~I~vWd 1174 (1179)
++.||.|+||.
T Consensus 1421 ~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1421 SSRDGVIKIWK 1431 (1431)
T ss_pred ecCCCeeeecC
Confidence 99999999994
No 182
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=6.5e-17 Score=180.77 Aligned_cols=255 Identities=24% Similarity=0.354 Sum_probs=190.8
Q ss_pred eEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCC------CCceeEEEeccccccEEEE--ec
Q 001039 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSL------RGSELRATLKGHTRTVRAI--NS 891 (1179)
Q Consensus 820 ~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~------~~~~~~~~l~~h~~~v~~~--s~ 891 (1179)
-.++..|.+.|.+++|+ +....|++|+.||++++|+++. ...+.+.++.+|.++|.|+ ..
T Consensus 287 k~tl~s~~d~ir~l~~~------------~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~ 354 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFH------------PSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS 354 (577)
T ss_pred eeeeecchhhhhhhhcC------------CCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC
Confidence 34889999999999998 6788899999999999999831 2235678999999999975 78
Q ss_pred CCCEEEEEeCCCcEEEEECCCC----------eEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEe
Q 001039 892 DRGKVVSGSDDQSVLVWDKQTS----------QLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV 960 (1179)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~----------~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 960 (1179)
++..+++|+.||+|+.|++... .....+.||.+.|+.++++ ..+.|++++.||+++.|+...... .++
T Consensus 355 n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f 433 (577)
T KOG0642|consen 355 NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTF 433 (577)
T ss_pred CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-ccc
Confidence 9999999999999999965321 2345678999999999999 577799999999999999876665 444
Q ss_pred ccC--CCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEeecC-------CCCeEEEEEcC--CEEEEEeCCCcE
Q 001039 961 GRC--SSAVLCMEYDDST-GILAAGGRDAVANIWDIRAGRQMHKFLGH-------TKWIRSIRMDR--DTVITGSDDWTA 1028 (1179)
Q Consensus 961 ~~~--~~~v~~l~~sp~~-~~l~sgs~dg~I~iwD~~~~~~~~~~~~~-------~~~I~sl~~~~--~~l~sgs~dg~I 1028 (1179)
... .+.-.++.+-... ...++...-+.-.++|...+..+..+... ...+..+.+++ ++.+++..|+.|
T Consensus 434 ~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~I 513 (577)
T KOG0642|consen 434 GEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSI 513 (577)
T ss_pred CCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCce
Confidence 322 2333455554332 22222222333334444444444433221 12345555544 489999999999
Q ss_pred EEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeeccc
Q 001039 1029 RMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIH 1090 (1179)
Q Consensus 1029 ~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h 1090 (1179)
+++|..+++.+.....|...++++++.|+|-+|++|+.||.+++|.+.. ..++.....|
T Consensus 514 r~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~---k~~~~es~~~ 572 (577)
T KOG0642|consen 514 RFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV---KTCVLESTAH 572 (577)
T ss_pred ecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccc---hheeeccccc
Confidence 9999999999999999999999999999999999999999999999876 3444444333
No 183
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.71 E-value=1.6e-15 Score=163.39 Aligned_cols=302 Identities=15% Similarity=0.203 Sum_probs=207.6
Q ss_pred cCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCC-------CceeEEEeccccccEEEE--ecCCCEEE
Q 001039 827 AGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLR-------GSELRATLKGHTRTVRAI--NSDRGKVV 897 (1179)
Q Consensus 827 ~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~-------~~~~~~~l~~h~~~v~~~--s~d~~~l~ 897 (1179)
..+|.++.|.+ .+.+.++||+.|..|++|.+... .-+....+..|...|+++ +++|..++
T Consensus 13 ~~pv~s~dfq~-----------n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 13 HEPVYSVDFQK-----------NSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCceEEEEecc-----------CcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeee
Confidence 35788898873 33449999999999999987522 123456788999999964 89999999
Q ss_pred EEeCCCcEEEEECC--------C--------CeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEe
Q 001039 898 SGSDDQSVLVWDKQ--------T--------SQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV 960 (1179)
Q Consensus 898 sgs~dg~I~iwd~~--------t--------~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 960 (1179)
+|+.+|.|.+|... + ....+.+.+|...|..++|+ ++..+++++.|..+++||+..|.....+
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~ 161 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAIL 161 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeec
Confidence 99999999999765 2 23445678899999999999 6888999999999999999999999999
Q ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEe---CCCcEEEEEccCCe
Q 001039 961 GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGS---DDWTARMWSISRGT 1037 (1179)
Q Consensus 961 ~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs---~dg~I~iwd~~~~~ 1037 (1179)
..|...+..++|+|-++++++-+.|...+.+++...+.+.... + .+ ..+-.+ .....+++.-++.
T Consensus 162 ~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~-~--~~--------m~~~~~~~~e~~s~rLfhDeTl- 229 (434)
T KOG1009|consen 162 DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHG-L--DI--------MPAKAFNEREGKSTRLFHDETL- 229 (434)
T ss_pred cccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeee-e--eE--------eeecccCCCCcceeeeeecCch-
Confidence 9999999999999999999999999877777765443333221 0 00 111111 1112233321211
Q ss_pred eeEEeecCCcCEEEEEEecCCCEEEEEeC----CCc-----EEEEEcCCCCcceEEEeecccCceEEEE-----------
Q 001039 1038 CDAVLACHAGPVQCVEYSSSDRGIITGSS----DGL-----LRFWENDDAGGIKCVKNVTIHSSAILSI----------- 1097 (1179)
Q Consensus 1038 ~~~~~~~h~~~V~~l~~spdg~~l~sgs~----Dg~-----I~iwd~~~~~~~~~~~~~~~h~~~i~si----------- 1097 (1179)
..-...++|+|+|..+++.+. ++. .++++-... .+....+.......+++
T Consensus 230 --------ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l--~rP~~~lp~~~k~~lavr~~pVy~elrp 299 (434)
T KOG1009|consen 230 --------KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL--KRPAARLPSPKKPALAVRFSPVYYELRP 299 (434)
T ss_pred --------hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccc--cCceeecCCCCcceEEEEeeeeEEEecc
Confidence 123456788999998887642 222 344443321 12222233222222222
Q ss_pred ---------ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCC
Q 001039 1098 ---------NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNG 1168 (1179)
Q Consensus 1098 ---------s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg 1168 (1179)
-|-+-.+|.++. +.|++||.++.. .......-|-..|++++|++||..|+..|.||
T Consensus 300 ~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~--------------P~~~v~nihy~~iTDiaws~dg~~l~vSS~DG 364 (434)
T KOG1009|consen 300 LSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLE--------------PLAVVDNIHYSAITDIAWSDDGSVLLVSSTDG 364 (434)
T ss_pred ccccccccccccceEEEEeec-ceEEEecccccc--------------ceEEEeeeeeeeecceeecCCCcEEEEeccCC
Confidence 123345566655 589999987431 12233456888999999999999999999999
Q ss_pred cEEEEECC
Q 001039 1169 LLRLWEAT 1176 (1179)
Q Consensus 1169 ~I~vWdv~ 1176 (1179)
..-+-.+.
T Consensus 365 yCS~vtfe 372 (434)
T KOG1009|consen 365 FCSLVTFE 372 (434)
T ss_pred ceEEEEEc
Confidence 76654443
No 184
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=8.4e-17 Score=193.55 Aligned_cols=254 Identities=15% Similarity=0.290 Sum_probs=198.1
Q ss_pred CCcccccCCcceEEEEEccCCCc----eeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEE
Q 001039 760 QPAEASGIGRSWVQSMFSREASS----RSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITAL 833 (1179)
Q Consensus 760 ~~~~~~gh~~~i~~~~fSpdg~~----las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v 833 (1179)
++............++|++.|.. +|.|..| |.+||...-.... ....+.+...|+|.|..+
T Consensus 56 k~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~-------------~~~~la~~~~h~G~V~gL 122 (1049)
T KOG0307|consen 56 KPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANA-------------SEEVLATKSKHTGPVLGL 122 (1049)
T ss_pred cccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCc-------------chHHHhhhcccCCceeee
Confidence 34444444567788899998887 6777777 9999988531100 112567788999999999
Q ss_pred EeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCC---CEEEEEeCCCcEEEEEC
Q 001039 834 HCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDR---GKVVSGSDDQSVLVWDK 910 (1179)
Q Consensus 834 ~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~---~~l~sgs~dg~I~iwd~ 910 (1179)
.|++ -.+++||+|+.||.|.|||+..........-..-...|.+++++. ..|++++.+|.+.|||+
T Consensus 123 DfN~-----------~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDl 191 (1049)
T KOG0307|consen 123 DFNP-----------FQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDL 191 (1049)
T ss_pred eccc-----------cCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccc
Confidence 9984 456699999999999999987422222111222455677777654 46899999999999999
Q ss_pred CCCeEEEEeecCCC--cEEEEEEeC--CCEEEEEEcCC---eEEEEeCCCC-eEEEEeccCCCcEEEEEEcCCC-CEEEE
Q 001039 911 QTSQLLEELKGHDA--QVSCVRMLS--GERVLTASHDG---TVKMWDVRTD-TCVATVGRCSSAVLCMEYDDST-GILAA 981 (1179)
Q Consensus 911 ~t~~~~~~~~~h~~--~V~~l~~s~--~~~l~sgs~dg---~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~-~~l~s 981 (1179)
+..+.+-.+..+.. .+..++|++ ...+++++.|. .|.+||++.- ..++.+.+|...|.++.|++.+ .++++
T Consensus 192 r~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllS 271 (1049)
T KOG0307|consen 192 RKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLS 271 (1049)
T ss_pred cCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhc
Confidence 99888777765544 477899993 45677777654 5999998864 5677788999999999999966 88999
Q ss_pred EeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEc---CCEEEEEeCCCcEEEEEccCCe
Q 001039 982 GGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD---RDTVITGSDDWTARMWSISRGT 1037 (1179)
Q Consensus 982 gs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~---~~~l~sgs~dg~I~iwd~~~~~ 1037 (1179)
++.|+.|.+|+.++++.+..+....+++..+.|. +..+++++.||.|.|+.+.++.
T Consensus 272 sgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 272 SGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999999999999999999988999999995 4589999999999999987654
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.1e-14 Score=144.67 Aligned_cols=261 Identities=15% Similarity=0.270 Sum_probs=191.9
Q ss_pred cCCCCEEEEEeCCCcEEEEcCC--------CCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeE----
Q 001039 848 REDAGFFISGSTDCLVKIWDPS--------LRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQL---- 915 (1179)
Q Consensus 848 s~d~~~Lasgs~Dg~I~lWd~~--------~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~---- 915 (1179)
+|.+++|++|+.+|+|.+..++ ..+...+...++|.+++..+.....+|++|+. |.|+-|..+....
T Consensus 19 sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~ 97 (325)
T KOG0649|consen 19 SPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLAT 97 (325)
T ss_pred CCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhccc
Confidence 4889999999999999999864 12334556678999999988777788888875 9999998754321
Q ss_pred --EEEe--ecC-----CCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 001039 916 --LEEL--KGH-----DAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD 985 (1179)
Q Consensus 916 --~~~~--~~h-----~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~d 985 (1179)
+... .-| -..|+++... ..+-++.++.|+.++-||+++|+..+++++|.+.+.++.--.....+++|+.|
T Consensus 98 K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~ED 177 (325)
T KOG0649|consen 98 KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAED 177 (325)
T ss_pred hhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCC
Confidence 1111 111 2346777666 35556667799999999999999999999999999999985656668899999
Q ss_pred CeEEEEeCCCCceeEEeec----------CCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEe
Q 001039 986 AVANIWDIRAGRQMHKFLG----------HTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYS 1055 (1179)
Q Consensus 986 g~I~iwD~~~~~~~~~~~~----------~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s 1055 (1179)
|++++||+++++.+..+.. ...+|-+++.+.+.+++|+. ..+.+|.++..++...+. -.+.+..+.|.
T Consensus 178 GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-p~lslwhLrsse~t~vfp-ipa~v~~v~F~ 255 (325)
T KOG0649|consen 178 GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFP-IPARVHLVDFV 255 (325)
T ss_pred ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC-CceeEEeccCCCceEEEe-cccceeEeeee
Confidence 9999999999999887642 23468889999999998864 579999999998888876 46678888886
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecC---CCEEEEEECCCcEEEEe
Q 001039 1056 SSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAG---DHWLGIGAADNSMSLFH 1117 (1179)
Q Consensus 1056 pdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~d---g~~lasgs~Dg~I~iwd 1117 (1179)
.+.+++++..+.|.-|.+.. ..-..........++.+.+ -+++-.++..+.+.|+.
T Consensus 256 --~d~vl~~G~g~~v~~~~l~G----vl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 256 --DDCVLIGGEGNHVQSYTLNG----VLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred --cceEEEeccccceeeeeecc----EEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 45678888888899998765 2222333333333333221 24455555666666653
No 186
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=8.7e-16 Score=162.15 Aligned_cols=268 Identities=19% Similarity=0.324 Sum_probs=195.4
Q ss_pred CceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCEEEEEe
Q 001039 781 SSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGS 858 (1179)
Q Consensus 781 ~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs 858 (1179)
+.+|++-+. |+++|..+++ .+..+++|...++.+.|.. ......+.+|+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-------------------~l~~fk~~~~~~N~vrf~~----------~ds~h~v~s~s 91 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-------------------LLEEFKGPPATTNGVRFIS----------CDSPHGVISCS 91 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-------------------hhheecCCCCcccceEEec----------CCCCCeeEEec
Confidence 445555444 9999999987 6788999999999999972 01467789999
Q ss_pred CCCcEEEEcCCCCCceeEEEecccc-ccEEEEe--cCCCEEEEEe----CCCcEEEEECCCCeE-EEE-eecCCCcEEEE
Q 001039 859 TDCLVKIWDPSLRGSELRATLKGHT-RTVRAIN--SDRGKVVSGS----DDQSVLVWDKQTSQL-LEE-LKGHDAQVSCV 929 (1179)
Q Consensus 859 ~Dg~I~lWd~~~~~~~~~~~l~~h~-~~v~~~s--~d~~~l~sgs----~dg~I~iwd~~t~~~-~~~-~~~h~~~V~~l 929 (1179)
.||+|++||++......+.....|. .+..++. ..++.+++|+ .+-.|.+||++..+. ++. ...|...|+++
T Consensus 92 sDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~l 171 (376)
T KOG1188|consen 92 SDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQL 171 (376)
T ss_pred cCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeE
Confidence 9999999999866666666777777 3444664 3566777775 367899999998766 554 46799999999
Q ss_pred EEe--CCCEEEEEEcCCeEEEEeCCCCeE---EEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEee
Q 001039 930 RML--SGERVLTASHDGTVKMWDVRTDTC---VATVGRCSSAVLCMEYDDST-GILAAGGRDAVANIWDIRAGRQMHKFL 1003 (1179)
Q Consensus 930 ~~s--~~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~~~~~v~~l~~sp~~-~~l~sgs~dg~I~iwD~~~~~~~~~~~ 1003 (1179)
.|+ +.+++++||.||.|.++|+..... +...-.+.+.|.++.|..++ +.+.+-+..+...+|+++.+.....+.
T Consensus 172 rFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 172 RFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred EecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 999 578999999999999999976432 22223567789999998877 458888889999999999887655443
Q ss_pred cCC-------------CCeEEEEE-cCCEEEEEeC-CCcEEEEEcc---C---CeeeEEeec-CCcCEEEEEEecCCCEE
Q 001039 1004 GHT-------------KWIRSIRM-DRDTVITGSD-DWTARMWSIS---R---GTCDAVLAC-HAGPVQCVEYSSSDRGI 1061 (1179)
Q Consensus 1004 ~~~-------------~~I~sl~~-~~~~l~sgs~-dg~I~iwd~~---~---~~~~~~~~~-h~~~V~~l~~spdg~~l 1061 (1179)
... .-|.+... +.+..+.++. -|+..++-+. + .+.+..+.+ |..-|+++.|...+..+
T Consensus 252 ~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l 331 (376)
T KOG1188|consen 252 NPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVL 331 (376)
T ss_pred CccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccccee
Confidence 221 11222222 2234444433 5555555443 2 334455555 67788999999999999
Q ss_pred EEEeCCCcEEEEEcCC
Q 001039 1062 ITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1062 ~sgs~Dg~I~iwd~~~ 1077 (1179)
.||++||.+.+|....
T Consensus 332 ~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 332 YTGGEDGLLQAWKVED 347 (376)
T ss_pred eccCCCceEEEEecCC
Confidence 9999999999998643
No 187
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=4e-15 Score=158.27 Aligned_cols=292 Identities=17% Similarity=0.199 Sum_probs=212.9
Q ss_pred CCcccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEe-cccCceEEEEee
Q 001039 760 QPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIR-GHAGAITALHCV 836 (1179)
Q Consensus 760 ~~~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-gH~~~V~~v~~s 836 (1179)
....+.+|...|.++.||.+|++||+|+.| +++|+++..... +.+.+++... .|.+.|.|++|.
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~-------------k~~KPI~~~~~~H~SNIF~L~F~ 114 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR-------------KTPKPIGVMEHPHRSNIFSLEFD 114 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh-------------cCCCCceeccCccccceEEEEEc
Confidence 344568999999999999999999999999 999999854321 1222454443 466899999997
Q ss_pred cccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCe
Q 001039 837 TKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQ 914 (1179)
Q Consensus 837 ~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~ 914 (1179)
..++++.+|+.+|+|...|++......+..-....+.|..+ +|..+.+++.+.+|.|.+||.....
T Consensus 115 ------------~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 115 ------------LENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred ------------cCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 67889999999999999998843333333333344577754 7889999999999999999987654
Q ss_pred -EEE--EeecCCCcEEEEEEeC--CCEEEEEEcCCeEEEEeCCCCeE-EEE------eccCCCcEEEEEEcCCCCEEEEE
Q 001039 915 -LLE--ELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRTDTC-VAT------VGRCSSAVLCMEYDDSTGILAAG 982 (1179)
Q Consensus 915 -~~~--~~~~h~~~V~~l~~s~--~~~l~sgs~dg~I~iwd~~~~~~-~~~------~~~~~~~v~~l~~sp~~~~l~sg 982 (1179)
.+. ...........+.|++ ..++++.+..+-+.+||.+.... +.. +......-.++.|+|+|+.+++-
T Consensus 183 ~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi 262 (609)
T KOG4227|consen 183 NPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI 262 (609)
T ss_pred CCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence 211 2223445667788884 66888999999999999875432 111 11112233678899999999887
Q ss_pred eCCCeEEEEeCCCCce-eEEeecC------CCCeEEEEEcCC-EEEEEeCCCcEEEEEccCC------------------
Q 001039 983 GRDAVANIWDIRAGRQ-MHKFLGH------TKWIRSIRMDRD-TVITGSDDWTARMWSISRG------------------ 1036 (1179)
Q Consensus 983 s~dg~I~iwD~~~~~~-~~~~~~~------~~~I~sl~~~~~-~l~sgs~dg~I~iwd~~~~------------------ 1036 (1179)
-....-.+||+-+.++ +.++... ...+.+++|-++ .+++|+.+-.|++|.+...
T Consensus 263 RR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~ 342 (609)
T KOG4227|consen 263 RRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPS 342 (609)
T ss_pred hccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCch
Confidence 7666677888876544 2333211 124667777554 6999999999999987421
Q ss_pred -----eeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 001039 1037 -----TCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEND 1076 (1179)
Q Consensus 1037 -----~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~ 1076 (1179)
+....+++|.+-++.+.|+|...+|++.+-...+++|.-.
T Consensus 343 ~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 343 EIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred hheecceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 1345678999999999999999999999999999999654
No 188
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=5.9e-15 Score=157.00 Aligned_cols=298 Identities=14% Similarity=0.183 Sum_probs=214.6
Q ss_pred eEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCC------CeEEEEee-cCCCcEEEEEEe-CCCEEEEEEcCC
Q 001039 875 LRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQT------SQLLEELK-GHDAQVSCVRML-SGERVLTASHDG 944 (1179)
Q Consensus 875 ~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t------~~~~~~~~-~h~~~V~~l~~s-~~~~l~sgs~dg 944 (1179)
+.+.+.+|.+.|.++ +.++++|++|+.|..+++|+++. .+++.... .|...|.|++|. .+..+++|+.++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 345677899999975 78899999999999999999853 35555443 355899999999 566788999999
Q ss_pred eEEEEeCCCCeEEEEecc--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeE--EeecCCCCeEEEEEcC---
Q 001039 945 TVKMWDVRTDTCVATVGR--CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR-QMH--KFLGHTKWIRSIRMDR--- 1016 (1179)
Q Consensus 945 ~I~iwd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~-~~~--~~~~~~~~I~sl~~~~--- 1016 (1179)
+|..-|+++.+.+..+.. ..+.|..+..+|..+.+++.+.+|.|.+||.+... .+. ..........++.|+|
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 999999999998877743 34689999999999999999999999999998754 222 2223344566777754
Q ss_pred CEEEEEeCCCcEEEEEccCCee-eEE------eecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecc
Q 001039 1017 DTVITGSDDWTARMWSISRGTC-DAV------LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTI 1089 (1179)
Q Consensus 1017 ~~l~sgs~dg~I~iwd~~~~~~-~~~------~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~ 1089 (1179)
.+|++.+..+-+-+||.+.... +.. +......-.++.|+|+|..+.+--....-.+||+.+. ++..--..
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~---R~~V~k~D 284 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQ---RCFVLKSD 284 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecc---cceeEecc
Confidence 4899999999999999876432 111 1111222356789999999988766666667887762 22211112
Q ss_pred cCc-------eEEEEe-cCCCEEEEEECCCcEEEEeCCCCCc-CcccCCCC---ccc----cceeeeecCCCcccEEEEE
Q 001039 1090 HSS-------AILSIN-AGDHWLGIGAADNSMSLFHRPQERL-GGFSGTGS---KMS----GWQLYRTPQKTVAVVRCIA 1153 (1179)
Q Consensus 1090 h~~-------~i~sis-~dg~~lasgs~Dg~I~iwd~~~~~~-~~~~~~g~---~~~----~~~~~~~~~~h~~~V~~v~ 1153 (1179)
|.. .+.++. .+..-+++|+.+-.|++|.++...- .++..-|. .+. .-..+..+++|...++.|.
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR 364 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR 364 (609)
T ss_pred CCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccccee
Confidence 221 122222 3455699999999999999874321 22221221 111 1234556789999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEC
Q 001039 1154 SDLERKRICSGGRNGLLRLWEA 1175 (1179)
Q Consensus 1154 fspdg~~Lasgs~Dg~I~vWdv 1175 (1179)
|+|...+|++.|....+++|.-
T Consensus 365 F~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 365 FSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ecCCcceEeccchhhheecccc
Confidence 9999999999999999999964
No 189
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.67 E-value=5.3e-15 Score=158.51 Aligned_cols=212 Identities=22% Similarity=0.346 Sum_probs=167.6
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEE
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVS 898 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~s 898 (1179)
..-...||+++|..++|+| .+...+||||.|.+|.||++..++ +...+ +
T Consensus 73 ~~P~v~GHt~~vLDi~w~P-----------fnD~vIASgSeD~~v~vW~IPe~~--l~~~l---t--------------- 121 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCP-----------FNDCVIASGSEDTKVMVWQIPENG--LTRDL---T--------------- 121 (472)
T ss_pred CCCCccCccccccccccCc-----------cCCceeecCCCCceEEEEECCCcc--cccCc---c---------------
Confidence 4456889999999999997 678899999999999999975211 11111 0
Q ss_pred EeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeC--CCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCC
Q 001039 899 GSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDST 976 (1179)
Q Consensus 899 gs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~ 976 (1179)
+++..+.+|...|..++|++ .+.|++++.|.+|.+||+.+|+.+.++. |.+.|.++.|+.+|
T Consensus 122 ---------------epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 122 ---------------EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG 185 (472)
T ss_pred ---------------cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC
Confidence 56778889999999999994 6789999999999999999999998886 99999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEeecCCC--CeEEEEE-cCCEEEEEe---CCCcEEEEEccCCee---eEEeecCCc
Q 001039 977 GILAAGGRDAVANIWDIRAGRQMHKFLGHTK--WIRSIRM-DRDTVITGS---DDWTARMWSISRGTC---DAVLACHAG 1047 (1179)
Q Consensus 977 ~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~--~I~sl~~-~~~~l~sgs---~dg~I~iwd~~~~~~---~~~~~~h~~ 1047 (1179)
.++++++.|..|+|||.++++.+..-.+|.+ ....+-. +++.+.+|. .+..+-+||..+-+. ..++. ..+
T Consensus 186 s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSn 264 (472)
T KOG0303|consen 186 SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSN 264 (472)
T ss_pred ceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCC
Confidence 9999999999999999999999988878876 3334433 555444443 567899999765432 23333 344
Q ss_pred CEEEEEEecCCCEEEE-EeCCCcEEEEEcCCC
Q 001039 1048 PVQCVEYSSSDRGIIT-GSSDGLLRFWENDDA 1078 (1179)
Q Consensus 1048 ~V~~l~~spdg~~l~s-gs~Dg~I~iwd~~~~ 1078 (1179)
.|.---|++|.+.+.. |-.|+.|+.|.+.+.
T Consensus 265 Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 265 GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred ceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 5655667888888765 447999999998874
No 190
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=5.7e-16 Score=173.33 Aligned_cols=260 Identities=18% Similarity=0.273 Sum_probs=197.0
Q ss_pred ccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccc
Q 001039 763 EASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKRE 840 (1179)
Q Consensus 763 ~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~ 840 (1179)
....|-..|...+|.|-...+++++.+ +++|++.... ........++.++++|.++|.|+++.
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~-----------~s~~~~~epi~tfraH~gPVl~v~v~---- 353 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAK-----------KSAEKDVEPILTFRAHEGPVLCVVVP---- 353 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccC-----------CccccceeeeEEEecccCceEEEEec----
Confidence 345677788888999999999999999 9999994311 11122334789999999999999997
Q ss_pred eeccccccCCCCEEEEEeCCCcEEEEcCCC--------CCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEEC
Q 001039 841 VWDLVGDREDAGFFISGSTDCLVKIWDPSL--------RGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDK 910 (1179)
Q Consensus 841 ~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~--------~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~ 910 (1179)
+++..+.+|+.||+|+.|++.. ....+...+.||++.|+. ++.....|++++.||+++.|+.
T Consensus 354 --------~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~ 425 (577)
T KOG0642|consen 354 --------SNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEP 425 (577)
T ss_pred --------CCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeecc
Confidence 8999999999999999996531 112345678999999985 4788888999999999999998
Q ss_pred CCCeEEEEeecC--CCcEEEEEEeCC--CEEEEEEcCCeEEEEeCCCCeEEEEeccC-------CCcEEEEEEcCCCCEE
Q 001039 911 QTSQLLEELKGH--DAQVSCVRMLSG--ERVLTASHDGTVKMWDVRTDTCVATVGRC-------SSAVLCMEYDDSTGIL 979 (1179)
Q Consensus 911 ~t~~~~~~~~~h--~~~V~~l~~s~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-------~~~v~~l~~sp~~~~l 979 (1179)
..... .++... .+.-.++.+... .+.++...-+.-.+++...+..+..+... ...+.-+.++|.+.+.
T Consensus 426 ~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~ 504 (577)
T KOG0642|consen 426 TEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADIT 504 (577)
T ss_pred CCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCee
Confidence 76665 334322 223345555422 22333333444445555555555444321 2356778899999999
Q ss_pred EEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC--EEEEEeCCCcEEEEEccCCeeeEEeecCC
Q 001039 980 AAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHA 1046 (1179)
Q Consensus 980 ~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~ 1046 (1179)
+++..|+.|+++|..+++.+.....|...+++++++++ ++++|+.||.+++|.+....++.....|.
T Consensus 505 ~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 505 FTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred EecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 99999999999999999999999999999999999665 99999999999999998888877766654
No 191
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=8.6e-15 Score=173.15 Aligned_cols=277 Identities=17% Similarity=0.320 Sum_probs=199.1
Q ss_pred EEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCC
Q 001039 773 QSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDRED 850 (1179)
Q Consensus 773 ~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d 850 (1179)
.+.|+|=...++++.+. |+|||.+.+......... ......|+.+.+.. ..|
T Consensus 1069 ~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~----------------~~~~t~Vs~l~liN----------e~D 1122 (1387)
T KOG1517|consen 1069 TLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNG----------------AFPDTRVSDLELIN----------EQD 1122 (1387)
T ss_pred eeeecCCCceeEEcCCcceEEEEecccCceeccccCC----------------CCCCCccceeeeec----------ccc
Confidence 34788877778877744 999999977632211100 01235688888763 256
Q ss_pred CCEEEEEeCCCcEEEEcCCCC---CceeEEEec---c------ccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 001039 851 AGFFISGSTDCLVKIWDPSLR---GSELRATLK---G------HTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEE 918 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~~---~~~~~~~l~---~------h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~ 918 (1179)
..++++|+.||.||||+-... ..+++.... + ..+.+..+.....+|+++|.-..|+|||....+++..
T Consensus 1123 ~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred hhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEee
Confidence 789999999999999985422 223333222 2 2234556666777788888789999999998888777
Q ss_pred ee-cCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCe---EEEEeccCCCc--EEEEEEcCCCCE-EEEEeCCCeEE
Q 001039 919 LK-GHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDT---CVATVGRCSSA--VLCMEYDDSTGI-LAAGGRDAVAN 989 (1179)
Q Consensus 919 ~~-~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~---~~~~~~~~~~~--v~~l~~sp~~~~-l~sgs~dg~I~ 989 (1179)
+. +.+..|+++.-. .|+.+++|..||.|++||.+... .+...+.|... |..+.+.++|-. +++|+.||.|+
T Consensus 1203 iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~ 1282 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQ 1282 (1387)
T ss_pred cccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEE
Confidence 65 344556776655 57999999999999999987643 45666777776 999999886654 99999999999
Q ss_pred EEeCCCCceeE--EeecCC--C-CeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEEeec-------CCcCEEEEEEe
Q 001039 990 IWDIRAGRQMH--KFLGHT--K-WIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLAC-------HAGPVQCVEYS 1055 (1179)
Q Consensus 990 iwD~~~~~~~~--~~~~~~--~-~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~-------h~~~V~~l~~s 1055 (1179)
+||++...... .+..|. + ..+++..+. ..+++|+. +.|+||++. |+.+..++. ..+.+.|++|+
T Consensus 1283 ~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FH 1360 (1387)
T KOG1517|consen 1283 LLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFH 1360 (1387)
T ss_pred EEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeec
Confidence 99999853222 222222 2 488888854 48888888 999999975 444433332 23568999999
Q ss_pred cCCCEEEEEeCCCcEEEEEcCC
Q 001039 1056 SSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1056 pdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
|..-.+|+|+.|..|.||...+
T Consensus 1361 P~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1361 PHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred chhHhhhhccCCceEEEeecCC
Confidence 9999999999999999998776
No 192
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.66 E-value=2.2e-16 Score=182.18 Aligned_cols=274 Identities=20% Similarity=0.344 Sum_probs=213.6
Q ss_pred cccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeeccc
Q 001039 762 AEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1179)
Q Consensus 762 ~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~ 839 (1179)
..+.||-..|.|+.|...|.++++|++| |+||..+++. ++...+||++.|+.++.+
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~-------------------~lAs~rGhs~ditdlavs--- 241 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR-------------------CLASCRGHSGDITDLAVS--- 241 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh-------------------hhccCCCCccccchhccc---
Confidence 4568999999999999999999999999 9999998887 888999999999999987
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 001039 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEEL 919 (1179)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~ 919 (1179)
.++.+++++|.|..|++|.+. ...++..+.||++.|+++...... +.+.||++++||.+ -......
T Consensus 242 ---------~~n~~iaaaS~D~vIrvWrl~--~~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r-~~~~~y~ 307 (1113)
T KOG0644|consen 242 ---------SNNTMIAAASNDKVIRVWRLP--DGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDAR-LEPRIYV 307 (1113)
T ss_pred ---------hhhhhhhhcccCceEEEEecC--CCchHHHHhccccceeeeccCccc--cCCCCCceEecccc-ccccccC
Confidence 677889999999999999965 677888999999999987433222 77899999999987 1111111
Q ss_pred ----e-cCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEe
Q 001039 920 ----K-GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYD-DSTGILAAGGRDAVANIWD 992 (1179)
Q Consensus 920 ----~-~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s-p~~~~l~sgs~dg~I~iwD 992 (1179)
+ ....-+.++.+- .+..+++|+.|+.-..|.+..-.. +...+.-+..+ ....+.+++-.+..+.+|+
T Consensus 308 prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwn 381 (1113)
T KOG0644|consen 308 PRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWN 381 (1113)
T ss_pred CCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeeee
Confidence 1 112334445554 678899999999988887643221 11111111111 1124566677788899999
Q ss_pred CCCCceeEEeecCCCCeEEEEEc---CCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCc
Q 001039 993 IRAGRQMHKFLGHTKWIRSIRMD---RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGL 1069 (1179)
Q Consensus 993 ~~~~~~~~~~~~~~~~I~sl~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~ 1069 (1179)
+.+|...+.+.+|...+..+.++ +....+++.||...|||+-.|.+++.+....+.+....||+||..++....-|.
T Consensus 382 l~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgq 461 (1113)
T KOG0644|consen 382 LYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQ 461 (1113)
T ss_pred cccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCc
Confidence 99999999999999999998884 457889999999999999999888776644667778899999999999989999
Q ss_pred EEEEEcCC
Q 001039 1070 LRFWENDD 1077 (1179)
Q Consensus 1070 I~iwd~~~ 1077 (1179)
++|.....
T Consensus 462 l~i~g~gq 469 (1113)
T KOG0644|consen 462 LYILGTGQ 469 (1113)
T ss_pred eEEeccCC
Confidence 99987654
No 193
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.66 E-value=2.8e-15 Score=152.87 Aligned_cols=279 Identities=17% Similarity=0.198 Sum_probs=190.9
Q ss_pred cccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEe-cccCceEEEEeecccc
Q 001039 764 ASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIR-GHAGAITALHCVTKRE 840 (1179)
Q Consensus 764 ~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~ 840 (1179)
+.+|+..+.++.|-.++. |.+|... |++|++.+.. ..-.++ .|...|+.+.-.
T Consensus 10 LRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r-------------------~~~~~r~~g~~~it~lq~~---- 65 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTER-------------------DLPLIRLFGRLFITNLQSI---- 65 (323)
T ss_pred eccccchheehhhccchh-hhcccccceEEEEEeecCc-------------------cchhhhhhccceeeceeec----
Confidence 458999999999999987 5566555 9999999877 344566 567788888865
Q ss_pred eeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE--EEecCCC---EEEEEeCCC--cEEEEECCCC
Q 001039 841 VWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRG---KVVSGSDDQ--SVLVWDKQTS 913 (1179)
Q Consensus 841 ~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~---~l~sgs~dg--~I~iwd~~t~ 913 (1179)
| ++.+.+-+.|+.+.+|++.......+..+....-... ++.+.++ .++..-..| .+.+-|....
T Consensus 66 --------p-~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~ 136 (323)
T KOG0322|consen 66 --------P-NDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDT 136 (323)
T ss_pred --------C-CcchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCcc
Confidence 3 3778899999999999987433222222221111111 1222221 122111111 1222332222
Q ss_pred eEEEEe----ecCCCcEEEEEEe--CCC--EEEEEEcCCeEEEEeCCCCeEEE----------EeccCCCcEEEEEEcCC
Q 001039 914 QLLEEL----KGHDAQVSCVRML--SGE--RVLTASHDGTVKMWDVRTDTCVA----------TVGRCSSAVLCMEYDDS 975 (1179)
Q Consensus 914 ~~~~~~----~~h~~~V~~l~~s--~~~--~l~sgs~dg~I~iwd~~~~~~~~----------~~~~~~~~v~~l~~sp~ 975 (1179)
..+... .+..+.+.|..+. .+. .+++|..+|.|.+||+.++..+. ....|..+|.++.+.+.
T Consensus 137 tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~ 216 (323)
T KOG0322|consen 137 TQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS 216 (323)
T ss_pred ceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh
Confidence 222222 1234567777654 343 36688899999999999984333 33467889999999987
Q ss_pred CCEEEEEeCCCeEEEEeCCCC--ce----eEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCE
Q 001039 976 TGILAAGGRDAVANIWDIRAG--RQ----MHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPV 1049 (1179)
Q Consensus 976 ~~~l~sgs~dg~I~iwD~~~~--~~----~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V 1049 (1179)
...=++|+.+..+..|.+... .. ..+++...-.-..+..+++.+++++.|+.||+|+.++..++..++-|.+.|
T Consensus 217 ~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagv 296 (323)
T KOG0322|consen 217 CDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGV 296 (323)
T ss_pred hcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcce
Confidence 666778888888999988643 21 112222222233455578899999999999999999999999999999999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEEc
Q 001039 1050 QCVEYSSSDRGIITGSSDGLLRFWEN 1075 (1179)
Q Consensus 1050 ~~l~~spdg~~l~sgs~Dg~I~iwd~ 1075 (1179)
++++|+|+...+|+++.|++|.+|++
T Consensus 297 n~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 297 NAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999986
No 194
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.65 E-value=1.4e-14 Score=149.50 Aligned_cols=286 Identities=16% Similarity=0.244 Sum_probs=196.1
Q ss_pred CCcEEEEcCCCCCcee-EEEeccccccEEEE--ecC-CCEEEEEeCC-------CcEEEEECCCC---------eEEEEe
Q 001039 860 DCLVKIWDPSLRGSEL-RATLKGHTRTVRAI--NSD-RGKVVSGSDD-------QSVLVWDKQTS---------QLLEEL 919 (1179)
Q Consensus 860 Dg~I~lWd~~~~~~~~-~~~l~~h~~~v~~~--s~d-~~~l~sgs~d-------g~I~iwd~~t~---------~~~~~~ 919 (1179)
|+.|.+-+++..+..+ ...+..|.+.|+.+ +|- .+.|+++..+ -.+.||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 6778887766444433 34677788899877 454 4555555432 24678987542 233444
Q ss_pred e-cCCCcEEEEEEeC-CCEEEEEEcCCeEEEEeCCCCeE-EEEec-----cCCCcEEEEEEcC--CCCEEEEEeCCCeEE
Q 001039 920 K-GHDAQVSCVRMLS-GERVLTASHDGTVKMWDVRTDTC-VATVG-----RCSSAVLCMEYDD--STGILAAGGRDAVAN 989 (1179)
Q Consensus 920 ~-~h~~~V~~l~~s~-~~~l~sgs~dg~I~iwd~~~~~~-~~~~~-----~~~~~v~~l~~sp--~~~~l~sgs~dg~I~ 989 (1179)
. .+-+.|.|+.|.+ ++.+++-. |..|.+|++..+.. +..+. .+....++-+|+| +|+.+++. .|+++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~ 196 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQ 196 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEE
Confidence 3 3456899999994 55565554 88999999988765 33332 2345678889998 77777665 589999
Q ss_pred EEeCCCCceeEEee-cCCCCeEEEEEcCC---EEEEEeCCCcEEEEEccCC-eeeEEeecCCcCEEEEEEecC-CCEEEE
Q 001039 990 IWDIRAGRQMHKFL-GHTKWIRSIRMDRD---TVITGSDDWTARMWSISRG-TCDAVLACHAGPVQCVEYSSS-DRGIIT 1063 (1179)
Q Consensus 990 iwD~~~~~~~~~~~-~~~~~I~sl~~~~~---~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~spd-g~~l~s 1063 (1179)
.||+|+.++...+. .|...|..+.++++ +|++|+.||.|++||.++. .++.++.+|..+|+++.|+|. .+.+++
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence 99999987776654 68888999999987 8999999999999999864 578889999999999999995 567889
Q ss_pred EeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecC
Q 001039 1064 GSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQ 1143 (1179)
Q Consensus 1064 gs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~ 1143 (1179)
|+.|..|.+|....-.....+.. .+...- .++ . |.. ++. ....+ ..+.+..
T Consensus 277 ~~SDs~V~Lsca~svSSE~qi~~--~~dese---~e~--------~-------dse-er~-kpL~d-------g~l~tyd 327 (370)
T KOG1007|consen 277 GGSDSAVNLSCASSVSSEQQIEF--EDDESE---SED--------E-------DSE-ERV-KPLQD-------GQLETYD 327 (370)
T ss_pred cCCCceeEEEecccccccccccc--cccccc---Ccc--------h-------hhH-Hhc-ccccc-------ccccccc
Confidence 99999999998765221111100 000000 000 0 000 000 00011 2345677
Q ss_pred CCcccEEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 001039 1144 KTVAVVRCIASDLERK-RICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1144 ~h~~~V~~v~fspdg~-~Lasgs~Dg~I~vWdv~ 1176 (1179)
.|...|.+++||.-.. .+||-|.||.+.|=++.
T Consensus 328 ehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 328 EHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 8999999999987554 57888999999886664
No 195
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.64 E-value=3e-16 Score=181.02 Aligned_cols=275 Identities=20% Similarity=0.316 Sum_probs=218.3
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEE
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKV 896 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l 896 (1179)
.++.+.||..+|+|+.|- ..|.++++|+.|..|+||..+ +..+.....||.+.++. ++.++..+
T Consensus 182 ~ikrLlgH~naVyca~fD------------rtg~~Iitgsdd~lvKiwS~e--t~~~lAs~rGhs~ditdlavs~~n~~i 247 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFD------------RTGRYIITGSDDRLVKIWSME--TARCLASCRGHSGDITDLAVSSNNTMI 247 (1113)
T ss_pred HHHHHHhhhhheeeeeec------------cccceEeecCccceeeeeecc--chhhhccCCCCccccchhccchhhhhh
Confidence 567889999999999986 789999999999999999955 67788999999999995 57778889
Q ss_pred EEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEe-----ccCCCcEEEEE
Q 001039 897 VSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATV-----GRCSSAVLCME 971 (1179)
Q Consensus 897 ~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~-----~~~~~~v~~l~ 971 (1179)
++++.|..|++|.+.++.++..+.+|++.|++++|++-. +.+.||++++||.+- ..+... .....-+.++.
T Consensus 248 aaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~ 323 (1113)
T KOG0644|consen 248 AAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSIL 323 (1113)
T ss_pred hhcccCceEEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEeccccc-cccccCCCCCCcccccceeeee
Confidence 999999999999999999999999999999999999744 778999999999872 211111 11235577788
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE---cCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcC
Q 001039 972 YDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM---DRDTVITGSDDWTARMWSISRGTCDAVLACHAGP 1048 (1179)
Q Consensus 972 ~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~---~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~ 1048 (1179)
+...+..+++|+.|+.-..|....-. .+...+.-+.. ...+.+++-.+-.+.+|++.+|...+.+.+|...
T Consensus 324 ~~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~ 397 (1113)
T KOG0644|consen 324 FENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDE 397 (1113)
T ss_pred ccccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccc
Confidence 88888889999999998888754321 11111111111 1136667777888999999999999999999999
Q ss_pred EEEEEEecCCCEE-EEEeCCCcEEEEEcCCCCcceEEEeecccCceE-EEEecCCCEEEEEECCCcEEEEeCC
Q 001039 1049 VQCVEYSSSDRGI-ITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAI-LSINAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1049 V~~l~~spdg~~l-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i-~sis~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
+..+.++|-+..+ .+++.||...|||+-.+...+... .+|...+ ..+|++|..++....-|.++|....
T Consensus 398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~--~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF--IGHGKLVDGKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred eeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee--cccceeeccccCCCCceEecCCCCCceEEeccC
Confidence 9999999966554 578899999999998865555443 4566555 4569999999998888999998764
No 196
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.63 E-value=1.4e-14 Score=155.43 Aligned_cols=204 Identities=19% Similarity=0.314 Sum_probs=169.7
Q ss_pred EeecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCC-------eEEEEeccCCCcEEEEEEcCC-CCEEEEEeCCCe
Q 001039 918 ELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTD-------TCVATVGRCSSAVLCMEYDDS-TGILAAGGRDAV 987 (1179)
Q Consensus 918 ~~~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~-------~~~~~~~~~~~~v~~l~~sp~-~~~l~sgs~dg~ 987 (1179)
.+.||.++|..++|+ ++..|++||.|.+|.||++..+ +.+..+.+|...|-.++|+|. .+.|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 457899999999998 6888999999999999998654 456778899999999999994 578899999999
Q ss_pred EEEEeCCCCceeEEeecCCCCeEEEEE--cCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcC-EEEEEEecCCCEEEEE
Q 001039 988 ANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCDAVLACHAGP-VQCVEYSSSDRGIITG 1064 (1179)
Q Consensus 988 I~iwD~~~~~~~~~~~~~~~~I~sl~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~-V~~l~~spdg~~l~sg 1064 (1179)
|.+||+.+|+.+.++. |...|++++| ++..+++++.|..|||||.++++.+..-.+|.+. -..+.|-.+|..+-||
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999988886 9999999999 5779999999999999999999999988888763 4567788889855555
Q ss_pred e---CCCcEEEEEcCCCCcceEEEeecccCceEEEE-ecCCCEEE-EEECCCcEEEEeCCCCC
Q 001039 1065 S---SDGLLRFWENDDAGGIKCVKNVTIHSSAILSI-NAGDHWLG-IGAADNSMSLFHRPQER 1122 (1179)
Q Consensus 1065 s---~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si-s~dg~~la-sgs~Dg~I~iwd~~~~~ 1122 (1179)
. ++..+-+||..+-...-.+..+...++..+-+ .+|.+++. +|-.|+.||-|.+....
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 4 57789999988866555666666666655555 67777766 45579999999987654
No 197
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.62 E-value=5.8e-14 Score=166.04 Aligned_cols=258 Identities=15% Similarity=0.207 Sum_probs=192.5
Q ss_pred eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCC
Q 001039 790 VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPS 869 (1179)
Q Consensus 790 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~ 869 (1179)
+.+|+++... .....-.-...|+|++|+| -+..++|.|+.+|.|.+||+.
T Consensus 224 ~~vW~~~~p~-------------------~Pe~~~~~~s~v~~~~f~p-----------~~p~ll~gG~y~GqV~lWD~~ 273 (555)
T KOG1587|consen 224 LLVWSLKNPN-------------------TPELVLESPSEVTCLKFCP-----------FDPNLLAGGCYNGQVVLWDLR 273 (555)
T ss_pred EEEEecCCCC-------------------CceEEEecCCceeEEEecc-----------CCcceEEeeccCceEEEEEcc
Confidence 6799988653 1222333567899999997 678899999999999999987
Q ss_pred CCCcee----EEEeccccccEEEE----ecCCCEEEEEeCCCcEEEEECCCCeE------EEEee------cCCCcEEEE
Q 001039 870 LRGSEL----RATLKGHTRTVRAI----NSDRGKVVSGSDDQSVLVWDKQTSQL------LEELK------GHDAQVSCV 929 (1179)
Q Consensus 870 ~~~~~~----~~~l~~h~~~v~~~----s~d~~~l~sgs~dg~I~iwd~~t~~~------~~~~~------~h~~~V~~l 929 (1179)
.....+ ......|..+++++ +..+.-+++++.||.|..|+++.-.. ..... .....++++
T Consensus 274 ~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~ 353 (555)
T KOG1587|consen 274 KGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSL 353 (555)
T ss_pred CCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeE
Confidence 444321 22334678888865 34456799999999999998764322 11111 123457888
Q ss_pred EEe--CCCEEEEEEcCCeEEEEeCCC---Ce-----EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCce
Q 001039 930 RML--SGERVLTASHDGTVKMWDVRT---DT-----CVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR-AGRQ 998 (1179)
Q Consensus 930 ~~s--~~~~l~sgs~dg~I~iwd~~~---~~-----~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~-~~~~ 998 (1179)
.|. +...+++|+.+|.|.--+-.. +. ....+..|.+.|.++.++|-+..++..+.|.++++|... ...+
T Consensus 354 ~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P 433 (555)
T KOG1587|consen 354 KFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP 433 (555)
T ss_pred eeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCc
Confidence 887 577899999999987733322 21 123455688999999999977666655559999999988 6777
Q ss_pred eEEeecCCCCeEEEEEcCC---EEEEEeCCCcEEEEEccCC--eeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEE
Q 001039 999 MHKFLGHTKWIRSIRMDRD---TVITGSDDWTARMWSISRG--TCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFW 1073 (1179)
Q Consensus 999 ~~~~~~~~~~I~sl~~~~~---~l~sgs~dg~I~iwd~~~~--~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iw 1073 (1179)
+..+..+...+++++|++. .++++..||.|.+||+... .++.+..-+....+.+.|+++|+.|++|+..|++++|
T Consensus 434 l~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~ 513 (555)
T KOG1587|consen 434 LLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHIL 513 (555)
T ss_pred chhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEE
Confidence 7778888888999999765 7999999999999999654 3444444456677888899999999999999999999
Q ss_pred EcCC
Q 001039 1074 ENDD 1077 (1179)
Q Consensus 1074 d~~~ 1077 (1179)
++..
T Consensus 514 ~l~~ 517 (555)
T KOG1587|consen 514 KLSE 517 (555)
T ss_pred EcCc
Confidence 9964
No 198
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=6.7e-13 Score=142.11 Aligned_cols=223 Identities=13% Similarity=0.165 Sum_probs=170.0
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCC--CcEEEEECCCCeEEEEeecCCCcE
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDD--QSVLVWDKQTSQLLEELKGHDAQV 926 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~d--g~I~iwd~~t~~~~~~~~~h~~~V 926 (1179)
.|...|..|+.|| .++++.+..+ +. .........|...-....++|..+.+ +.+++.+.+.+..+..+. ....|
T Consensus 15 qd~~~lsvGs~~G-yk~~~~~~~~-k~-~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~I 90 (391)
T KOG2110|consen 15 QDSTLLSVGSKDG-YKIFSCSPFE-KC-FSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSI 90 (391)
T ss_pred cceeEEEccCCCc-eeEEecCchH-Hh-hcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEe-cCCce
Confidence 7888899999998 6788765222 21 11111222333444555666666554 358999998888777765 34567
Q ss_pred EEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccC---CCcEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeEE
Q 001039 927 SCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRC---SSAVLCMEYDDSTGILAAGG--RDAVANIWDIRAGRQMHK 1001 (1179)
Q Consensus 927 ~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~---~~~v~~l~~sp~~~~l~sgs--~dg~I~iwD~~~~~~~~~ 1001 (1179)
.++.++-. +++++-.+ .|.|||+++.+.+.++... ...+.+++.+..+.+++--+ ..|.|.+||..+-+.+..
T Consensus 91 L~VrmNr~-RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~ 168 (391)
T KOG2110|consen 91 LAVRMNRK-RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNT 168 (391)
T ss_pred EEEEEccc-eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeE
Confidence 78877644 45555444 3999999999999888643 44566666777777887643 468999999999999999
Q ss_pred eecCCCCeEEEEEc--CCEEEEEeCCCc-EEEEEccCCeeeEEeecC--CcCEEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 001039 1002 FLGHTKWIRSIRMD--RDTVITGSDDWT-ARMWSISRGTCDAVLACH--AGPVQCVEYSSSDRGIITGSSDGLLRFWEND 1076 (1179)
Q Consensus 1002 ~~~~~~~I~sl~~~--~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~h--~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~ 1076 (1179)
+..|.+.+.+++|+ |.++|++++.|+ |||+.+.+|+.+.+++.. ...|.+++|+|++++|++.|..++|++|.++
T Consensus 169 I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 169 INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence 99999999999994 669999999998 699999999999998743 3468899999999999999999999999998
Q ss_pred C
Q 001039 1077 D 1077 (1179)
Q Consensus 1077 ~ 1077 (1179)
.
T Consensus 249 ~ 249 (391)
T KOG2110|consen 249 K 249 (391)
T ss_pred c
Confidence 7
No 199
>PF03456 uDENN: uDENN domain; InterPro: IPR005113 This region is always found associated with IPR001194 from INTERPRO. It is predicted to form an all beta domain [].; PDB: 3TW8_A.
Probab=99.61 E-value=5e-17 Score=137.71 Aligned_cols=65 Identities=32% Similarity=0.722 Sum_probs=46.0
Q ss_pred ccccccccccCCCCCCCCCCCCCCcccCCCceEEeecCCCCCCCCCCCceeEEEEEcCCCCeEEEEEEEec
Q 001039 34 LSSVLDQFPPLNHSLYTPPPPQLSTCVLPAGVQFYSSGFDSDDPSTFPRTYPIVLTEGDGSKIYVSCISFR 104 (1179)
Q Consensus 34 ~p~vl~~yP~~~~~~~~~~~~~~~~fc~P~g~~~~~~~~~~~~~~~~p~~f~fvlT~~~g~~~Yg~cl~f~ 104 (1179)
+|+|++|||++|+...+..+++|++||||+|+.+..+. ...|++|+|||||+||+|+||+|++||
T Consensus 1 ~p~il~~yP~~d~~~~~~~~~~i~~FCfP~G~~~~~~~------~~~~~~f~FvLT~~~G~r~Yg~Cl~f~ 65 (65)
T PF03456_consen 1 KPEILDRYPPSDHEPDPPLPPSIPMFCFPDGIEISSQS------RPPPQFFSFVLTDEDGSRLYGYCLRFY 65 (65)
T ss_dssp --EEEEEEST--T---HHHHHHHHHHHS-S-CCCCGGG-------GSSCEEEEEEE-TTS-EEEEEEEE--
T ss_pred CCEEEEECCCCccccCCCChhhCCccCCCCCcEeeccc------cCCCeEEEEEEECCCCCEEEEEEEECC
Confidence 58999999999984344578999999999999886643 467899999999999999999999996
No 200
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=4.5e-13 Score=157.93 Aligned_cols=320 Identities=14% Similarity=0.197 Sum_probs=225.6
Q ss_pred EEEEEccCCCceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCC
Q 001039 772 VQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDRED 850 (1179)
Q Consensus 772 ~~~~fSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d 850 (1179)
..+.+++.|++.+..-.. +.+|.+..+..... ....-..|+-.+++.++| |+
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~---------------~~~~~~~Htf~~t~~~~s------------pn 216 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTS---------------SRDITVHHTFNITCVALS------------PN 216 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccceeec---------------cchhhhhhcccceeEEec------------cc
Confidence 456899999988887777 99999886441100 111233467778899888 89
Q ss_pred CCEEEEEeCCCcEEEEcCCC--CCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcE
Q 001039 851 AGFFISGSTDCLVKIWDPSL--RGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQV 926 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~--~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V 926 (1179)
++++|+|..||.|.+|.--. ....-...+.-|...|++ ++++|.+|++||..|.+.+|.+.+++ .+-+..-.++|
T Consensus 217 ~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I 295 (792)
T KOG1963|consen 217 ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPI 295 (792)
T ss_pred cceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCee
Confidence 99999999999999997432 223334567778777774 68999999999999999999999998 45566678899
Q ss_pred EEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEecc-----------CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 001039 927 SCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGR-----------CSSAVLCMEYDDSTGILAAGGRDAVANIWDIR 994 (1179)
Q Consensus 927 ~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-----------~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~ 994 (1179)
..+.++ +++..+....|+.|.+....+.....++.+ ..+-.+.++++|..+.++-.+..|.|.+||+-
T Consensus 296 ~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~ 375 (792)
T KOG1963|consen 296 LHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLY 375 (792)
T ss_pred EEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecc
Confidence 999999 788888899999999998866654444432 23446788999977788888899999999998
Q ss_pred CCceeEEeec-----CCC------CeEEEEE--cCCEEEEEe--------CCC--cEEEEEccCCeeeEE-----eecCC
Q 001039 995 AGRQMHKFLG-----HTK------WIRSIRM--DRDTVITGS--------DDW--TARMWSISRGTCDAV-----LACHA 1046 (1179)
Q Consensus 995 ~~~~~~~~~~-----~~~------~I~sl~~--~~~~l~sgs--------~dg--~I~iwd~~~~~~~~~-----~~~h~ 1046 (1179)
+.+.+.++.. +.+ .+++++. .+++++|+- .|| .+++|-......-.. ...|.
T Consensus 376 td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~ 455 (792)
T KOG1963|consen 376 TDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHG 455 (792)
T ss_pred ccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCC
Confidence 8877665531 111 3344433 356676653 333 477887654432222 23577
Q ss_pred cCEEEEEEec-CCC-EEEEEeCCCcEEEEEcCCCC-------cceEEEeecccCceE--EEEecCCCEEEEEECCCcEEE
Q 001039 1047 GPVQCVEYSS-SDR-GIITGSSDGLLRFWENDDAG-------GIKCVKNVTIHSSAI--LSINAGDHWLGIGAADNSMSL 1115 (1179)
Q Consensus 1047 ~~V~~l~~sp-dg~-~l~sgs~Dg~I~iwd~~~~~-------~~~~~~~~~~h~~~i--~sis~dg~~lasgs~Dg~I~i 1115 (1179)
..+...++.+ ... ..++++.||.+++|-+.+.. .+.|...-..|..++ .+++.||..|++| .|++|.+
T Consensus 456 ~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s-~~~~Iti 534 (792)
T KOG1963|consen 456 NAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS-FDDTITI 534 (792)
T ss_pred ceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe-cCCEEEE
Confidence 7666666544 333 78999999999999884321 233333322345554 4457888777765 6779999
Q ss_pred EeCCC
Q 001039 1116 FHRPQ 1120 (1179)
Q Consensus 1116 wd~~~ 1120 (1179)
||..+
T Consensus 535 wd~~~ 539 (792)
T KOG1963|consen 535 WDYDT 539 (792)
T ss_pred ecCCC
Confidence 99875
No 201
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.60 E-value=8.6e-14 Score=143.68 Aligned_cols=245 Identities=20% Similarity=0.322 Sum_probs=183.1
Q ss_pred eEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCC-------CcEEEEcCCCCC-------ceeEEEec-cccc
Q 001039 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTD-------CLVKIWDPSLRG-------SELRATLK-GHTR 884 (1179)
Q Consensus 820 ~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~D-------g~I~lWd~~~~~-------~~~~~~l~-~h~~ 884 (1179)
-+.+..|.|.|+.++-+| .|.+.|+|+-.+ -.+.||.+...- .+.+..+. .+-+
T Consensus 56 skvf~h~agEvw~las~P-----------~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg 124 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSP-----------FDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVG 124 (370)
T ss_pred hhhhhcCCcceehhhcCC-----------CCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhC
Confidence 356778889999998886 567778877542 237899875221 12333343 3445
Q ss_pred cEEEE--ecCCCEEEEEeCCCcEEEEECCCCeE-EEEee-----cCCCcEEEEEEe---CCCEEEEEEcCCeEEEEeCCC
Q 001039 885 TVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQL-LEELK-----GHDAQVSCVRML---SGERVLTASHDGTVKMWDVRT 953 (1179)
Q Consensus 885 ~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~-~~~~~-----~h~~~V~~l~~s---~~~~l~sgs~dg~I~iwd~~~ 953 (1179)
.+.|+ .|++..+++-. |..|.+|+++.+.. +..+. ++....++-+|+ +++.++ ...|+++..||+++
T Consensus 125 ~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~-tt~d~tl~~~D~RT 202 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVA-TTSDSTLQFWDLRT 202 (370)
T ss_pred ceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEE-EeCCCcEEEEEccc
Confidence 66664 89999998877 78899999988765 33332 245567777887 355555 45689999999999
Q ss_pred CeEEEEec-cCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC-ceeEEeecCCCCeEEEEEcCC---EEEEEeCCCc
Q 001039 954 DTCVATVG-RCSSAVLCMEYDDSTG-ILAAGGRDAVANIWDIRAG-RQMHKFLGHTKWIRSIRMDRD---TVITGSDDWT 1027 (1179)
Q Consensus 954 ~~~~~~~~-~~~~~v~~l~~sp~~~-~l~sgs~dg~I~iwD~~~~-~~~~~~~~~~~~I~sl~~~~~---~l~sgs~dg~ 1027 (1179)
.++...+. .|...|..+.|+|+.+ +|++|+.||.|++||.|.. .++..+.+|..+|+++.+++. ++++|+.|..
T Consensus 203 ~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~ 282 (370)
T KOG1007|consen 203 MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA 282 (370)
T ss_pred hhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce
Confidence 88877764 5778899999999765 6788999999999999864 578889999999999999764 8999999999
Q ss_pred EEEEEccCC-----------------------------eeeEEeecCCcCEEEEEEecCCCE-EEEEeCCCcEEEEEcCC
Q 001039 1028 ARMWSISRG-----------------------------TCDAVLACHAGPVQCVEYSSSDRG-IITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1028 I~iwd~~~~-----------------------------~~~~~~~~h~~~V~~l~~spdg~~-l~sgs~Dg~I~iwd~~~ 1077 (1179)
|.+|....- ..+.++..|...|++++||.-..+ +|+-+.||.+.|=.+..
T Consensus 283 V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 283 VNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred eEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 999965321 123456679999999999886665 56778999998866543
No 202
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.60 E-value=8.5e-14 Score=164.67 Aligned_cols=260 Identities=13% Similarity=0.178 Sum_probs=189.8
Q ss_pred CcEEEEECCCC-eEEEEeecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCeE--EEE----eccCCCcEEEEEEc
Q 001039 903 QSVLVWDKQTS-QLLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTC--VAT----VGRCSSAVLCMEYD 973 (1179)
Q Consensus 903 g~I~iwd~~t~-~~~~~~~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~~--~~~----~~~~~~~v~~l~~s 973 (1179)
+.+.+|++... .+...+. ....|.++.|+ +.+.++.|+.+|.|.+||++.+.. ... ...|..+++.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 37899999876 3333443 56789999998 688899999999999999988765 222 23578899999997
Q ss_pred CCC--CEEEEEeCCCeEEEEeCCCCceeE-E-----ee------cCCCCeEEEEE---cCCEEEEEeCCCcEEEEEccC-
Q 001039 974 DST--GILAAGGRDAVANIWDIRAGRQMH-K-----FL------GHTKWIRSIRM---DRDTVITGSDDWTARMWSISR- 1035 (1179)
Q Consensus 974 p~~--~~l~sgs~dg~I~iwD~~~~~~~~-~-----~~------~~~~~I~sl~~---~~~~l~sgs~dg~I~iwd~~~- 1035 (1179)
.+. .-+++++.||.|..|+++.-.... . .. .....+++++| +++.+++|+++|.|.--+-..
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 644 449999999999999987533211 0 11 12236778887 567999999999998743222
Q ss_pred --Ce-----eeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecC-CCEEE
Q 001039 1036 --GT-----CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAG-DHWLG 1105 (1179)
Q Consensus 1036 --~~-----~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~d-g~~la 1105 (1179)
+. ....+..|.++|+++.++|-+..++..+.|.+++||..... ...+..+..+...++++ ||. ...++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~--~~Pl~~~~~~~~~v~~vaWSptrpavF~ 458 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI--ASPLLSLDSSPDYVTDVAWSPTRPAVFA 458 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC--CCcchhhhhccceeeeeEEcCcCceEEE
Confidence 11 23345678999999999998777666666999999987721 34555555666667555 554 46788
Q ss_pred EEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1106 IGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1106 sgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
++..||.+.+||+..... .+..+...+....+.+.|+++|+.|+.|+..|++.+|++..+
T Consensus 459 ~~d~~G~l~iWDLl~~~~-------------~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDE-------------EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred EEcCCCceehhhhhcccc-------------CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 899999999999975422 222233334667788889999999999999999999999653
No 203
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.60 E-value=3.7e-14 Score=156.86 Aligned_cols=206 Identities=16% Similarity=0.308 Sum_probs=163.8
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEE
Q 001039 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVS 927 (1179)
Q Consensus 850 d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~ 927 (1179)
..+.++.++.||.+.+-+- ..........|.+.+.+ +++||.-|+++++||.|++|. ++|-...++.....+|.
T Consensus 74 ~~d~~~i~s~DGkf~il~k---~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~ 149 (737)
T KOG1524|consen 74 GSDTLLICSNDGRFVILNK---SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIR 149 (737)
T ss_pred CcceEEEEcCCceEEEecc---cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeE
Confidence 4567888899999999883 45566778899999885 799999999999999999998 55666566666778999
Q ss_pred EEEEeCC-CEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCC
Q 001039 928 CVRMLSG-ERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHT 1006 (1179)
Q Consensus 928 ~l~~s~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~ 1006 (1179)
|++|.++ +.++- +..+.+.+=-+.....+...+.|++-|.++.|++..+.+++|+.|-..++||- .|..+..-..|.
T Consensus 150 c~~W~p~S~~vl~-c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~e 227 (737)
T KOG1524|consen 150 CARWAPNSNSIVF-CQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEE 227 (737)
T ss_pred EEEECCCCCceEE-ecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhc
Confidence 9999843 33332 23456666666666667777899999999999999999999999999999995 477777777899
Q ss_pred CCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEE
Q 001039 1007 KWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRF 1072 (1179)
Q Consensus 1007 ~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~i 1072 (1179)
.+|++++|+++.++..+.-++.|+= +...+.|..++||+||..+++|+..|.+.+
T Consensus 228 y~ITSva~npd~~~~v~S~nt~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 228 YAITSVAFNPEKDYLLWSYNTARFS-----------SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred cceeeeeeccccceeeeeeeeeeec-----------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 9999999998855544444455521 234678999999999999999999997654
No 204
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.58 E-value=8.6e-13 Score=152.43 Aligned_cols=265 Identities=13% Similarity=0.209 Sum_probs=172.9
Q ss_pred EEEeCCCcEEEEECCC-Ce--EEEEeecCCCcEEEEEEe-CCCEEEEEE-cCCeEEEEeCC-CCeE--EEEeccCCCcEE
Q 001039 897 VSGSDDQSVLVWDKQT-SQ--LLEELKGHDAQVSCVRML-SGERVLTAS-HDGTVKMWDVR-TDTC--VATVGRCSSAVL 968 (1179)
Q Consensus 897 ~sgs~dg~I~iwd~~t-~~--~~~~~~~h~~~V~~l~~s-~~~~l~sgs-~dg~I~iwd~~-~~~~--~~~~~~~~~~v~ 968 (1179)
++...++.|.+||+.+ ++ .+..+. +.+....++++ +++++++++ .++.|.+|++. +++. ..... ......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence 3446789999999964 43 445554 33556778888 677776654 58889999987 3432 22222 234567
Q ss_pred EEEEcCCCCEEEEEe-CCCeEEEEeCCC-Cc---eeEEeecCCCCeEEEEEcC--CEE-EEEeCCCcEEEEEccCCeeeE
Q 001039 969 CMEYDDSTGILAAGG-RDAVANIWDIRA-GR---QMHKFLGHTKWIRSIRMDR--DTV-ITGSDDWTARMWSISRGTCDA 1040 (1179)
Q Consensus 969 ~l~~sp~~~~l~sgs-~dg~I~iwD~~~-~~---~~~~~~~~~~~I~sl~~~~--~~l-~sgs~dg~I~iwd~~~~~~~~ 1040 (1179)
.++++|+++++++++ .++.|.+||+.+ +. .+..+.+ .....++++++ +++ ++...++.|.+||+++...+.
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 899999999888876 478999999974 22 2222222 23355666654 455 455567999999997633221
Q ss_pred E-----ee-cCCcCEEEEEEecCCCEEEEEeC-CCcEEEEEcCCC-CcceEEEeecccC------ce--EEEEecCCCEE
Q 001039 1041 V-----LA-CHAGPVQCVEYSSSDRGIITGSS-DGLLRFWENDDA-GGIKCVKNVTIHS------SA--ILSINAGDHWL 1104 (1179)
Q Consensus 1041 ~-----~~-~h~~~V~~l~~spdg~~l~sgs~-Dg~I~iwd~~~~-~~~~~~~~~~~h~------~~--i~sis~dg~~l 1104 (1179)
. .. ........++|+|+|++++++.. ++.|.+||++.. +....+..+.... .. -..++|+++++
T Consensus 163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred ccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 1 11 12344678999999999988876 899999999742 2234444332211 11 25568999999
Q ss_pred EEEEC-CCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeC-CCcEEEEECC
Q 001039 1105 GIGAA-DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGR-NGLLRLWEAT 1176 (1179)
Q Consensus 1105 asgs~-Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~-Dg~I~vWdv~ 1176 (1179)
+++.. ++.|.+|++... +.. .+....... ....+.++++|||++|++++. +++|.+|+++
T Consensus 243 yv~~~~~~~I~v~~i~~~--------~~~---~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 243 YACDRTASLISVFSVSED--------GSV---LSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEecCCCCeEEEEEEeCC--------CCe---EEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 99864 789999998632 111 112221111 123457899999999998775 8999999874
No 205
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.58 E-value=6e-14 Score=155.22 Aligned_cols=255 Identities=17% Similarity=0.252 Sum_probs=186.4
Q ss_pred ccccEEEEe-cCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe---------CCCEEEEEEcCCeEEEEeC
Q 001039 882 HTRTVRAIN-SDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML---------SGERVLTASHDGTVKMWDV 951 (1179)
Q Consensus 882 h~~~v~~~s-~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s---------~~~~l~sgs~dg~I~iwd~ 951 (1179)
|...+.++. .....++.++.|..+.+|+-.+........-....+....+. ..+.++.++.||.+.+.+
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~- 91 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN- 91 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec-
Confidence 444555542 223445556666666666544443333332222222222211 245799999999999987
Q ss_pred CCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC---EEEEEeCCCcE
Q 001039 952 RTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD---TVITGSDDWTA 1028 (1179)
Q Consensus 952 ~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~---~l~sgs~dg~I 1028 (1179)
+.++.-+.+..|.+.+.+-.|+|+|.-|++++.||.|++|. ++|....++.....+|.|++|.++ .+.+. .+.+
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~--g~h~ 168 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ--GGHI 168 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec--CCeE
Confidence 56777788889999999999999999999999999999998 566665566667789999999665 44444 4567
Q ss_pred EEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEe--cCCCEEEE
Q 001039 1029 RMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSIN--AGDHWLGI 1106 (1179)
Q Consensus 1029 ~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis--~dg~~las 1106 (1179)
.|=.+.....+-.+++|++-|.++.|++..+.+++|++|-..++||... ..+.+...|..+|++++ |+ ..++.
T Consensus 169 ~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G----~~Lf~S~~~ey~ITSva~npd-~~~~v 243 (737)
T KOG1524|consen 169 SIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG----ANLFTSAAEEYAITSVAFNPE-KDYLL 243 (737)
T ss_pred EEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC----cccccCChhccceeeeeeccc-cceee
Confidence 7767776777778899999999999999999999999999999999775 56666678888998885 55 55555
Q ss_pred EECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEE
Q 001039 1107 GAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRL 1172 (1179)
Q Consensus 1107 gs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~v 1172 (1179)
|+. ++.|+ .....+.|..++||+||..++.|...|.+.+
T Consensus 244 ~S~-nt~R~--------------------------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 244 WSY-NTARF--------------------------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eee-eeeee--------------------------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 544 34442 1134567999999999999999999887754
No 206
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.6e-14 Score=158.74 Aligned_cols=286 Identities=14% Similarity=0.191 Sum_probs=219.9
Q ss_pred cccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccce
Q 001039 764 ASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREV 841 (1179)
Q Consensus 764 ~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~ 841 (1179)
+.+|...+..+.|...|..+++|+.| |.+||+..+.. .+.-..||...|..-.|.|.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~------------------~l~f~SGH~~NvfQaKFiP~--- 196 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP------------------KLSFESGHCNNVFQAKFIPF--- 196 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCc------------------ccccccccccchhhhhccCC---
Confidence 45677888889999999999999999 99999997763 44556789999988888762
Q ss_pred eccccccCCCCEEEEEeCCCcEEEEcCCCCCcee-EEEeccccccEEEE--ecC-CCEEEEEeCCCcEEEEECCCCeEEE
Q 001039 842 WDLVGDREDAGFFISGSTDCLVKIWDPSLRGSEL-RATLKGHTRTVRAI--NSD-RGKVVSGSDDQSVLVWDKQTSQLLE 917 (1179)
Q Consensus 842 ~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~-~~~l~~h~~~v~~~--s~d-~~~l~sgs~dg~I~iwd~~t~~~~~ 917 (1179)
.+...+++++.||.|++=.+...+... ...+..|.+.|..+ -|+ ...+.+++.|+.+.-.|+.++....
T Consensus 197 -------s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~ 269 (559)
T KOG1334|consen 197 -------SGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE 269 (559)
T ss_pred -------CCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc
Confidence 456789999999999998875333322 45566788888754 454 4569999999999999998765433
Q ss_pred Ee---ecCCC---cEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCeE------EEEe------ccCCCcEEEEEEcCCCC
Q 001039 918 EL---KGHDA---QVSCVRML--SGERVLTASHDGTVKMWDVRTDTC------VATV------GRCSSAVLCMEYDDSTG 977 (1179)
Q Consensus 918 ~~---~~h~~---~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~~------~~~~------~~~~~~v~~l~~sp~~~ 977 (1179)
.+ ..+.. ....++.. +...+++|+.|..+++||.+.-.. +..+ ......|++++|+.++.
T Consensus 270 ~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s 349 (559)
T KOG1334|consen 270 KFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS 349 (559)
T ss_pred eeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc
Confidence 32 22222 34566666 355799999999999999865321 1222 12345799999998888
Q ss_pred EEEEEeCCCeEEEEeCCC--C----------ceeEE-eecCCC--CeEEEEEc---CCEEEEEeCCCcEEEEEccCCeee
Q 001039 978 ILAAGGRDAVANIWDIRA--G----------RQMHK-FLGHTK--WIRSIRMD---RDTVITGSDDWTARMWSISRGTCD 1039 (1179)
Q Consensus 978 ~l~sgs~dg~I~iwD~~~--~----------~~~~~-~~~~~~--~I~sl~~~---~~~l~sgs~dg~I~iwd~~~~~~~ 1039 (1179)
-+.+...|-.|+++.-.- | ..++. ++||.+ .|..+.|- .+++++|+.-|.|.||+-.+++.+
T Consensus 350 ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii 429 (559)
T KOG1334|consen 350 ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEII 429 (559)
T ss_pred ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHH
Confidence 888888899999995432 2 12233 778876 56777773 359999999999999999999999
Q ss_pred EEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1040 AVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1040 ~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
..+.+...-|+|+.-+|.-..||+++-|..|+||...+
T Consensus 430 ~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 430 RFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred HHhhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence 99998888999999999999999999999999998754
No 207
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2.8e-14 Score=156.91 Aligned_cols=288 Identities=19% Similarity=0.299 Sum_probs=217.0
Q ss_pred eEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeEEEEe-ecCCCcEEEEEEe---CCCEEEEEEcCCeEEE
Q 001039 875 LRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLEEL-KGHDAQVSCVRML---SGERVLTASHDGTVKM 948 (1179)
Q Consensus 875 ~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~-~~h~~~V~~l~~s---~~~~l~sgs~dg~I~i 948 (1179)
+...+.+|.+.|..+ ...|..+++|+.|..|.+||+.+++....+ .+|...|....|. +...+++++.||.|++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 446788999999865 678999999999999999999998887766 4788777766665 5677999999999998
Q ss_pred EeCCCC-eE--EEEeccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCceeEEee---cCCC---CeEEEEEcC--
Q 001039 949 WDVRTD-TC--VATVGRCSSAVLCMEYDDST-GILAAGGRDAVANIWDIRAGRQMHKFL---GHTK---WIRSIRMDR-- 1016 (1179)
Q Consensus 949 wd~~~~-~~--~~~~~~~~~~v~~l~~sp~~-~~l~sgs~dg~I~iwD~~~~~~~~~~~---~~~~---~I~sl~~~~-- 1016 (1179)
=.+... .+ ...+..|.+.|.-++..|+. ..+.+++.|+.+.-+|++++.+...+. .+.. ...+++.++
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 876543 32 23455789999999999954 568899999999999999876644432 2223 455777754
Q ss_pred -CEEEEEeCCCcEEEEEccCCee------eEEee------cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCc---
Q 001039 1017 -DTVITGSDDWTARMWSISRGTC------DAVLA------CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGG--- 1080 (1179)
Q Consensus 1017 -~~l~sgs~dg~I~iwd~~~~~~------~~~~~------~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~--- 1080 (1179)
..+++|+.|..+++||.+.-.. +..+. .....|++++|+.++.-+.+.-.|-.|+++.-..+..
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 4899999999999999865321 12221 2234699999998888888888888899995443221
Q ss_pred ------ceEEEe-ecccCce--EEEE---ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCccc
Q 001039 1081 ------IKCVKN-VTIHSSA--ILSI---NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAV 1148 (1179)
Q Consensus 1081 ------~~~~~~-~~~h~~~--i~si---s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~ 1148 (1179)
...++. +++|... |..+ -|...++++|+.-|.|.||+-.+. +.++...+....
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~---------------eii~~MegDr~V 438 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG---------------EIIRFMEGDRHV 438 (559)
T ss_pred CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh---------------HHHHHhhcccce
Confidence 022223 6677653 4444 467899999999999999998743 444555555558
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001039 1149 VRCIASDLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1149 V~~v~fspdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
|+|+.-+|--..|||+|-|.-|+||-..+
T Consensus 439 VNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 439 VNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred EeccCCCCCCchhhccCCccceeeecCCc
Confidence 99999999999999999999999998744
No 208
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.55 E-value=5.8e-13 Score=137.82 Aligned_cols=238 Identities=16% Similarity=0.194 Sum_probs=174.0
Q ss_pred CcEEEEEEe----CCCEEEEEEc----CCeEEEEeC--CCCeEEEEe-ccCCCcEEEEEEcCCCC-----EEEEEeCCCe
Q 001039 924 AQVSCVRML----SGERVLTASH----DGTVKMWDV--RTDTCVATV-GRCSSAVLCMEYDDSTG-----ILAAGGRDAV 987 (1179)
Q Consensus 924 ~~V~~l~~s----~~~~l~sgs~----dg~I~iwd~--~~~~~~~~~-~~~~~~v~~l~~sp~~~-----~l~sgs~dg~ 987 (1179)
-.+.++.|+ .+.+++.|+. .+.|.+..+ .+++.+..- ..|..+++.+.|.|+.. +||+.+ ..
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DF 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--Ce
Confidence 456778887 3567888874 455666544 344443322 36788999999999763 455543 57
Q ss_pred EEEEeCCCC--cee--E-----EeecCCCCeEEEEE---cCCEEEEEeCCCcEEEEEccCCe---eeEEeecCCcCEEEE
Q 001039 988 ANIWDIRAG--RQM--H-----KFLGHTKWIRSIRM---DRDTVITGSDDWTARMWSISRGT---CDAVLACHAGPVQCV 1052 (1179)
Q Consensus 988 I~iwD~~~~--~~~--~-----~~~~~~~~I~sl~~---~~~~l~sgs~dg~I~iwd~~~~~---~~~~~~~h~~~V~~l 1052 (1179)
+++|.+... +.. . +-..+..+++++.| +++++.+.+-|-+..|||+.++. ....+-+|+..|..+
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI 202 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI 202 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence 999998742 111 1 11245568999999 57899999999999999999863 356678899999999
Q ss_pred EEecCC-CEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEec---CCCEEEEEEC-CCcEEEEeCCCCCcCccc
Q 001039 1053 EYSSSD-RGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINA---GDHWLGIGAA-DNSMSLFHRPQERLGGFS 1127 (1179)
Q Consensus 1053 ~~spdg-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~---dg~~lasgs~-Dg~I~iwd~~~~~~~~~~ 1127 (1179)
+|...+ +.+|+.+.||.||+||++..+.-..+..-.....+...+++ |-+++|+-.. ...|.|.|+...
T Consensus 203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P------ 276 (364)
T KOG0290|consen 203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP------ 276 (364)
T ss_pred EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC------
Confidence 999865 46889999999999999985544444433333455556643 5567777544 457889998732
Q ss_pred CCCCccccceeeeecCCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Q 001039 1128 GTGSKMSGWQLYRTPQKTVAVVRCIASDLE-RKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1128 ~~g~~~~~~~~~~~~~~h~~~V~~v~fspd-g~~Lasgs~Dg~I~vWdv~t 1177 (1179)
+ ..+..+++|.+.|++++|.|. +..|+|||+|..+-+||+.+
T Consensus 277 --~------tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 277 --C------TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred --C------cceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 1 567788999999999999995 56899999999999999975
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.54 E-value=5.1e-13 Score=140.32 Aligned_cols=229 Identities=13% Similarity=0.120 Sum_probs=176.0
Q ss_pred cceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecccc
Q 001039 769 RSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVG 846 (1179)
Q Consensus 769 ~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~ 846 (1179)
.+|++.+|++|++.+|.+-.. |.|+...+.+. ....+++..|...|++|+|+
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~----------------w~~~htls~Hd~~vtgvdWa---------- 64 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL----------------WEPAHTLSEHDKIVTGVDWA---------- 64 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCC----------------ceeceehhhhCcceeEEeec----------
Confidence 678999999999999998777 99998876552 22678999999999999998
Q ss_pred ccCCCCEEEEEeCCCcEEEEcC-CCCCceeEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeEEE----Ee
Q 001039 847 DREDAGFFISGSTDCLVKIWDP-SLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLE----EL 919 (1179)
Q Consensus 847 ~s~d~~~Lasgs~Dg~I~lWd~-~~~~~~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~----~~ 919 (1179)
|..+.|++|+.|..-++|.. +....+....+..+...++++ +|.++.+++|+....|.||-++...--. .-
T Consensus 65 --p~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhik 142 (361)
T KOG1523|consen 65 --PKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIK 142 (361)
T ss_pred --CCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhC
Confidence 78899999999999999997 434445556677788888865 8999999999999999999876543221 22
Q ss_pred ecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCC-----C-------------CeEEEEeccCCCcEEEEEEcCCCCEEE
Q 001039 920 KGHDAQVSCVRML-SGERVLTASHDGTVKMWDVR-----T-------------DTCVATVGRCSSAVLCMEYDDSTGILA 980 (1179)
Q Consensus 920 ~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~-----~-------------~~~~~~~~~~~~~v~~l~~sp~~~~l~ 980 (1179)
+.+...|.+++|+ ++-.+++|+.|+.++++..- . |+.+..+....+.+..+.|+|+|+.|+
T Consensus 143 kPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~la 222 (361)
T KOG1523|consen 143 KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLA 222 (361)
T ss_pred CccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEee
Confidence 3466789999999 56678889999999998641 1 122333335567899999999999999
Q ss_pred EEeCCCeEEEEeCCCCc-eeEEeecCCCCeEEEEE-cCCEEEEEeCC
Q 001039 981 AGGRDAVANIWDIRAGR-QMHKFLGHTKWIRSIRM-DRDTVITGSDD 1025 (1179)
Q Consensus 981 sgs~dg~I~iwD~~~~~-~~~~~~~~~~~I~sl~~-~~~~l~sgs~d 1025 (1179)
-.+.|+.+.+-|..... .+.......-+..++.| +.+.++.++.|
T Consensus 223 wv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 223 WVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVVAAGYD 269 (361)
T ss_pred EecCCCceEEeecCCCchhccchhhccCCceeeEeecCCceeecCCC
Confidence 99999999999987664 34444334466667776 44455555544
No 210
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=2e-13 Score=151.56 Aligned_cols=211 Identities=16% Similarity=0.231 Sum_probs=153.8
Q ss_pred CCCcccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceE-EEecccCceEEEEe
Q 001039 759 QQPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIR-IIRGHAGAITALHC 835 (1179)
Q Consensus 759 ~~~~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~gH~~~V~~v~~ 835 (1179)
++..++.||..-|.++.|+.||.+|+||++| +.|||.-... .++ +-.||.+.|.++.|
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K-------------------llhsI~TgHtaNIFsvKF 101 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK-------------------LLHSISTGHTANIFSVKF 101 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcc-------------------eeeeeecccccceeEEee
Confidence 3567789999999999999999999999999 9999987443 333 45789999999999
Q ss_pred ecccceeccccccCCCCEEEEEeCCCcEEEEcCCCC--------CceeEEEeccccccEEEE--ecCC-CEEEEEeCCCc
Q 001039 836 VTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLR--------GSELRATLKGHTRTVRAI--NSDR-GKVVSGSDDQS 904 (1179)
Q Consensus 836 s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~--------~~~~~~~l~~h~~~v~~~--s~d~-~~l~sgs~dg~ 904 (1179)
-|. .+++.++||+.|..|+++|++.. -.+....+..|...|-.+ .|++ ..+.++++||+
T Consensus 102 vP~----------tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt 171 (758)
T KOG1310|consen 102 VPY----------TNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT 171 (758)
T ss_pred ecc----------CCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc
Confidence 873 46788999999999999998621 122334556777777644 5666 78999999999
Q ss_pred EEEEECCCCeE-------EE---EeecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCC--------Ce---------
Q 001039 905 VLVWDKQTSQL-------LE---ELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRT--------DT--------- 955 (1179)
Q Consensus 905 I~iwd~~t~~~-------~~---~~~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~--------~~--------- 955 (1179)
|+-+|++.... .. .+...--...|+..+ ...++++|+.|--.++||.+. +.
T Consensus 172 irQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~ 251 (758)
T KOG1310|consen 172 IRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDC 251 (758)
T ss_pred eeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCccc
Confidence 99999976311 11 111112235667777 567899999999999999432 11
Q ss_pred -EEEEec-cCC-----------CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 001039 956 -CVATVG-RCS-----------SAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ 998 (1179)
Q Consensus 956 -~~~~~~-~~~-----------~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~ 998 (1179)
++..+. +|- ..++-+.|+|+|..+++.-....|+++|+..++.
T Consensus 252 ~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 252 RCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred chhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 122221 111 1256688999999888877777899999986654
No 211
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.53 E-value=2.4e-11 Score=140.40 Aligned_cols=264 Identities=11% Similarity=0.171 Sum_probs=170.6
Q ss_pred EEEEeCCCcEEEEcCCCCC-ceeEEEecccc-ccEEEEecCCCEEEEEe-CCCcEEEEECC-CCeE--EEEeecCCCcEE
Q 001039 854 FISGSTDCLVKIWDPSLRG-SELRATLKGHT-RTVRAINSDRGKVVSGS-DDQSVLVWDKQ-TSQL--LEELKGHDAQVS 927 (1179)
Q Consensus 854 Lasgs~Dg~I~lWd~~~~~-~~~~~~l~~h~-~~v~~~s~d~~~l~sgs-~dg~I~iwd~~-t~~~--~~~~~~h~~~V~ 927 (1179)
.++...|+.|++||+...+ ......+.... ....+++|++++|++++ .++.|.+|+++ +++. +.... ......
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence 3445678999999986322 23444443222 22336799999987765 57899999986 3432 22222 233466
Q ss_pred EEEEe-CCCEEEEEE-cCCeEEEEeCCC-C---eEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeE
Q 001039 928 CVRML-SGERVLTAS-HDGTVKMWDVRT-D---TCVATVGRCSSAVLCMEYDDSTGILAAGG-RDAVANIWDIRAGRQMH 1000 (1179)
Q Consensus 928 ~l~~s-~~~~l~sgs-~dg~I~iwd~~~-~---~~~~~~~~~~~~v~~l~~sp~~~~l~sgs-~dg~I~iwD~~~~~~~~ 1000 (1179)
.++++ +++.+++++ .++.|.+||+.+ + +.+..+. +.....+++++|+++++++++ .++.|.+||+.+...+.
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 78888 677777666 489999999964 2 2223222 234467788999999886655 56899999998643221
Q ss_pred E-----ee-cCCCCeEEEEEcCC--EEEEEeC-CCcEEEEEccC--Ce--eeEEeecC------CcCEEEEEEecCCCEE
Q 001039 1001 K-----FL-GHTKWIRSIRMDRD--TVITGSD-DWTARMWSISR--GT--CDAVLACH------AGPVQCVEYSSSDRGI 1061 (1179)
Q Consensus 1001 ~-----~~-~~~~~I~sl~~~~~--~l~sgs~-dg~I~iwd~~~--~~--~~~~~~~h------~~~V~~l~~spdg~~l 1061 (1179)
. .. ........+.++++ +++++.. +++|.+||++. ++ .+..+..+ ......+.++|+|+++
T Consensus 163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred ccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 1 11 11234566777554 7766665 89999999973 32 23333221 1223468899999999
Q ss_pred EEEeC-CCcEEEEEcCCCC-cceEEEeec-ccCceEEEEecCCCEEEEEEC-CCcEEEEeCC
Q 001039 1062 ITGSS-DGLLRFWENDDAG-GIKCVKNVT-IHSSAILSINAGDHWLGIGAA-DNSMSLFHRP 1119 (1179)
Q Consensus 1062 ~sgs~-Dg~I~iwd~~~~~-~~~~~~~~~-~h~~~i~sis~dg~~lasgs~-Dg~I~iwd~~ 1119 (1179)
+++.. ++.|.+|+++..+ ....+.... +....-..++++|++|+++.. +++|.+|++.
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 98864 7899999997643 222333222 222234678899999998775 8999999885
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.51 E-value=4e-14 Score=154.81 Aligned_cols=264 Identities=16% Similarity=0.217 Sum_probs=202.1
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcE
Q 001039 888 AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAV 967 (1179)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v 967 (1179)
..+.+|.+++.|+..|.+-.+|+.+++....+.. ...|.++.|..+..+++......+.||| ..|..++.++.+ ..|
T Consensus 136 ~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK~y~yvYD-~~GtElHClk~~-~~v 212 (545)
T KOG1272|consen 136 DYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQKKYVYVYD-NNGTELHCLKRH-IRV 212 (545)
T ss_pred eecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhhceEEEec-CCCcEEeehhhc-Cch
Confidence 4578999999999999999999999999888763 4578889998655566666778999999 567777777554 578
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC--EEEEEeCCCcEEEEEccCCeeeEEeecC
Q 001039 968 LCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACH 1045 (1179)
Q Consensus 968 ~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h 1045 (1179)
..+.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|- .+-+|...|+|.+|.....+++..+.+|
T Consensus 213 ~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH 292 (545)
T KOG1272|consen 213 ARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCH 292 (545)
T ss_pred hhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhc
Confidence 99999999999999999999999999999999998888888888887764 7888999999999999999999999999
Q ss_pred CcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCc
Q 001039 1046 AGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGG 1125 (1179)
Q Consensus 1046 ~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~ 1125 (1179)
.++|.++++.++|+|++|.+.|..++|||+++......+.+ .|...-+++|..| +.+.+....+.||.-...
T Consensus 293 ~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~---- 364 (545)
T KOG1272|consen 293 RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQKG--LLALSYGDHVQIWKDALK---- 364 (545)
T ss_pred CCCcceEEECCCCcEEeecccccceeEeeeccccccceeec--CCCcccccccccc--ceeeecCCeeeeehhhhc----
Confidence 99999999999999999999999999999998443333322 3444444554433 334445568999953211
Q ss_pred ccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCC
Q 001039 1126 FSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNG 1168 (1179)
Q Consensus 1126 ~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg 1168 (1179)
.++.+. .+... ....+.|.++.|.|-...|-.|-.-|
T Consensus 365 ~s~~~~-----~pYm~-H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 365 GSGHGE-----TPYMN-HRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred CCCCCC-----cchhh-hccCcccccceeccHHHeeeccccCC
Confidence 000110 11111 11234789999999777666654444
No 213
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.49 E-value=9.2e-12 Score=133.52 Aligned_cols=233 Identities=9% Similarity=0.178 Sum_probs=169.5
Q ss_pred CcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCceeE
Q 001039 924 AQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD--AVANIWDIRAGRQMH 1000 (1179)
Q Consensus 924 ~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~d--g~I~iwD~~~~~~~~ 1000 (1179)
..+..+.|. +...|..|+.||. ++|.................|.-+-|+. .++|..+.+ ..+++++.+.+..+.
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred cceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceEE
Confidence 445666677 4555666667664 7777665443222222333455555654 455555543 459999998888777
Q ss_pred EeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeec---CCcCEEEEEEecCCCEEEEEe--CCCcEEEEEc
Q 001039 1001 KFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLAC---HAGPVQCVEYSSSDRGIITGS--SDGLLRFWEN 1075 (1179)
Q Consensus 1001 ~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---h~~~V~~l~~spdg~~l~sgs--~Dg~I~iwd~ 1075 (1179)
.+ .....|.++.++.++++++-.+. |+|||+++.+.+.++.. +...+.++++++.+.+++--+ ..|.|.+||.
T Consensus 83 e~-~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 83 EI-FFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred EE-ecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence 76 34567999999999888887665 99999999999888764 444566777777777888644 5789999999
Q ss_pred CCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCc-EEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEE
Q 001039 1076 DDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNS-MSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCI 1152 (1179)
Q Consensus 1076 ~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~-I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v 1152 (1179)
.+ .+.+..+..|.+.+.++ +++|.+||++++.|+ |||++++ +|..+.. .+.-.. ...|.++
T Consensus 161 ~n---l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~---------~G~kl~e---FRRG~~-~~~IySL 224 (391)
T KOG2110|consen 161 IN---LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP---------EGQKLYE---FRRGTY-PVSIYSL 224 (391)
T ss_pred cc---ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcC---------CccEeee---eeCCce-eeEEEEE
Confidence 98 77888888999988555 899999999999987 6899998 4432211 111111 4568999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCC
Q 001039 1153 ASDLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1153 ~fspdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
+|+||+++|++.|..++|+|+.+++
T Consensus 225 ~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 225 SFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EECCCCCeEEEecCCCeEEEEEecc
Confidence 9999999999999999999999875
No 214
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.48 E-value=1.1e-12 Score=135.90 Aligned_cols=233 Identities=20% Similarity=0.302 Sum_probs=171.6
Q ss_pred ecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCc--eeEEEec-----cccccEEEEe---cCC
Q 001039 824 RGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGS--ELRATLK-----GHTRTVRAIN---SDR 893 (1179)
Q Consensus 824 ~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~--~~~~~l~-----~h~~~v~~~s---~d~ 893 (1179)
-.|.-+++.+.|.|...- -..++|||++ ..+|+|.+..... ++...+. .+..++++|. -+.
T Consensus 93 fd~~YP~tK~~wiPd~~g-------~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp 163 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKG-------VYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDP 163 (364)
T ss_pred CCCCCCccceEecCCccc-------cCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCc
Confidence 358889999999964320 1125677665 3699999863222 2222222 3455677764 467
Q ss_pred CEEEEEeCCCcEEEEECCCCe---EEEEeecCCCcEEEEEEeC--CCEEEEEEcCCeEEEEeCCCCeEEEEec---cCCC
Q 001039 894 GKVVSGSDDQSVLVWDKQTSQ---LLEELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRTDTCVATVG---RCSS 965 (1179)
Q Consensus 894 ~~l~sgs~dg~I~iwd~~t~~---~~~~~~~h~~~V~~l~~s~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~---~~~~ 965 (1179)
+++.+++-|-+..|||++++. ....+-.|...|..++|.. -+.++++|.||.|+++|++..+.-..+. ....
T Consensus 164 ~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~ 243 (364)
T KOG0290|consen 164 NLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPST 243 (364)
T ss_pred ceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCC
Confidence 899999999999999999863 3556778999999999994 5679999999999999998765433332 2256
Q ss_pred cEEEEEEcC-CCCEEEEEeCC-CeEEEEeCCCC-ceeEEeecCCCCeEEEEEc---CCEEEEEeCCCcEEEEEccCCee-
Q 001039 966 AVLCMEYDD-STGILAAGGRD-AVANIWDIRAG-RQMHKFLGHTKWIRSIRMD---RDTVITGSDDWTARMWSISRGTC- 1038 (1179)
Q Consensus 966 ~v~~l~~sp-~~~~l~sgs~d-g~I~iwD~~~~-~~~~~~~~~~~~I~sl~~~---~~~l~sgs~dg~I~iwd~~~~~~- 1038 (1179)
+...++|++ |-+++|+-..| ..|.+.|+|.. .++..+++|.+.|+.++|. +..+++++.|..+.+||+...-.
T Consensus 244 pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~ 323 (364)
T KOG0290|consen 244 PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE 323 (364)
T ss_pred cceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc
Confidence 788899988 45667765544 57999999974 5688899999999999994 45999999999999999975322
Q ss_pred -----eEEeecCCcCEEEEEEec-CCCEEEEEeC
Q 001039 1039 -----DAVLACHAGPVQCVEYSS-SDRGIITGSS 1066 (1179)
Q Consensus 1039 -----~~~~~~h~~~V~~l~~sp-dg~~l~sgs~ 1066 (1179)
+..+. -.+.|+.+.|++ .+.+++.+..
T Consensus 324 ~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 324 NGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred CCCCchhhhh-ccceeeeeeecccCCCEEEEEec
Confidence 22222 467899999996 5677777654
No 215
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.48 E-value=5e-13 Score=140.17 Aligned_cols=353 Identities=14% Similarity=0.146 Sum_probs=221.2
Q ss_pred cCCCCCC-C----------CCCCCCCcccccCCcceEEEEEccCCCceeeccCc---eEeeeCCCCCCCCCCCCCCCCCC
Q 001039 747 PSPLSKD-A----------TNDDQQPAEASGIGRSWVQSMFSREASSRSHSFSR---VRKWTSDAANENGTPRKQDSTAG 812 (1179)
Q Consensus 747 fSP~g~~-~----------~~~~~~~~~~~gh~~~i~~~~fSpdg~~las~~~d---I~vWd~~~~~~~~~~~~~~~~~~ 812 (1179)
|||+|+. . +..+-|...+...-..|+.+.|+-|..++..+... |.+|++...+.
T Consensus 16 fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew------------ 83 (447)
T KOG4497|consen 16 FSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW------------ 83 (447)
T ss_pred ECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeeccee------------
Confidence 8999981 1 12334444443344678888999999887777554 99999886552
Q ss_pred CcccccceEEEecccCceEEEEeecccceeccccccCCCCEEE-EEeCCCcEEEEcCCCCCceeEEEeccccccEEEEec
Q 001039 813 GKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFI-SGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINS 891 (1179)
Q Consensus 813 ~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~La-sgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~ 891 (1179)
.-.+.....++.+++|| |||+.++ +..-|-.|.+|.+.+..... .....|.....++++
T Consensus 84 -------~ckIdeg~agls~~~WS------------PdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~ 143 (447)
T KOG4497|consen 84 -------YCKIDEGQAGLSSISWS------------PDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHP 143 (447)
T ss_pred -------EEEeccCCCcceeeeEC------------CCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECC
Confidence 23345556778889998 8996554 55568999999987433332 333445556778999
Q ss_pred CCCEEEEEeCCCc---EEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcE
Q 001039 892 DRGKVVSGSDDQS---VLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAV 967 (1179)
Q Consensus 892 d~~~l~sgs~dg~---I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v 967 (1179)
||++.+.++.-.. +.|.....-..++.++..+-..+.+.|+ +|+.++ +||.--.-.+..+ ...-.+
T Consensus 144 dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la---------Vwd~~Leykv~aY-e~~lG~ 213 (447)
T KOG4497|consen 144 DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEYKVYAY-ERGLGL 213 (447)
T ss_pred CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE---------Eecchhhheeeee-eeccce
Confidence 9999988876422 2222122233455566666677889999 455444 5653222222222 223568
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCC--------------------eEEEEEcCCEEEEEeCCCc
Q 001039 968 LCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKW--------------------IRSIRMDRDTVITGSDDWT 1027 (1179)
Q Consensus 968 ~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~--------------------I~sl~~~~~~l~sgs~dg~ 1027 (1179)
..++|+|.++++++|+.|+.+++.+--+.+...++ .|-.. ..++.+.+. |-.
T Consensus 214 k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef-lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~-------~~~ 285 (447)
T KOG4497|consen 214 KFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF-LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT-------DLE 285 (447)
T ss_pred eEEEeccccceEEeeccchhhhhhceeeeeehhhh-ccchhccCchhhhhhhhhcchhhhcccccccCCC-------ccc
Confidence 89999999999999999999999887776665544 22211 122333222 111
Q ss_pred EEEEEcc--------CCeeeEEee------cCCcCEEEEEEecCCCEEEEEeC--CCcEEEEEcCCCCcceEEEeecccC
Q 001039 1028 ARMWSIS--------RGTCDAVLA------CHAGPVQCVEYSSSDRGIITGSS--DGLLRFWENDDAGGIKCVKNVTIHS 1091 (1179)
Q Consensus 1028 I~iwd~~--------~~~~~~~~~------~h~~~V~~l~~spdg~~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~h~ 1091 (1179)
..+|... ....+..++ ...-.+.-++|++|..+++|-.+ -+.+.+||+... + +...-...
T Consensus 286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l---~-l~avLiQk 361 (447)
T KOG4497|consen 286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL---K-LHAVLIQK 361 (447)
T ss_pred cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh---h-hhhhhhhc
Confidence 2222221 111111221 22345778999999999998753 356899999882 2 22222233
Q ss_pred ceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCc
Q 001039 1092 SAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGL 1169 (1179)
Q Consensus 1092 ~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~ 1169 (1179)
.+|.++ .|....++.+.....+++|..... .++..+ +..-.|..+.|.-+|..++-+|.|..
T Consensus 362 ~piraf~WdP~~prL~vctg~srLY~W~psg~---------------~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 362 HPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP---------------RVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred cceeEEEeCCCCceEEEEcCCceEEEEcCCCc---------------eEEecC-CCCceeeeEEecCCCcEEEEEcCCce
Confidence 445444 788888888888888999987632 222222 22356999999999999999998863
No 216
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.8e-12 Score=141.54 Aligned_cols=194 Identities=15% Similarity=0.260 Sum_probs=149.0
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccCCeeeEEeec-
Q 001039 968 LCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISRGTCDAVLAC- 1044 (1179)
Q Consensus 968 ~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~- 1044 (1179)
.+++++.+|..+++|+.||.+|+|+..+...+.....|.+.|.++.|++ ..+++-+.| ..+||+.++|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 8899999999999999999999999888888888889999999999955 489999999 999999999977666542
Q ss_pred -CCcCEEEEEEecCC-----CEEEEEeCCCcEEEEEcCCCCcc---eEEEeeccc-CceEEEEecCCCEEEEEECCCcEE
Q 001039 1045 -HAGPVQCVEYSSSD-----RGIITGSSDGLLRFWENDDAGGI---KCVKNVTIH-SSAILSINAGDHWLGIGAADNSMS 1114 (1179)
Q Consensus 1045 -h~~~V~~l~~spdg-----~~l~sgs~Dg~I~iwd~~~~~~~---~~~~~~~~h-~~~i~sis~dg~~lasgs~Dg~I~ 1114 (1179)
.+.....+.|+.|+ ...+....-+.|+.||+...... +..+....+ ....++++.+|+++|.|+.||.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 23346677788776 23333344566777776542211 111122222 344566799999999999999999
Q ss_pred EEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1115 LFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1115 iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
|++..+-+ ......+.|...|+.+.|+||.+++++.+.|..+.|-.+.
T Consensus 307 i~~~~~lq--------------~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 307 IYDAKSLQ--------------RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEeceee--------------eeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 99987432 3344567899999999999999999999999988887654
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2e-12 Score=154.24 Aligned_cols=233 Identities=10% Similarity=0.071 Sum_probs=159.7
Q ss_pred CCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcC---CeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCC
Q 001039 902 DQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHD---GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTG 977 (1179)
Q Consensus 902 dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~ 977 (1179)
+..|.+||.+... ...+..+...+....|+ +++.++.++.+ ..|.+||+.+++..... ...+.....+|+|||+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-SFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-cCCCccCceeECCCCC
Confidence 4689999987554 45667788889999999 68888877653 46999999887643221 2223344689999999
Q ss_pred EEEEEe-CCCeEE--EEeCCCCceeEEeecCCCCeEEEEEcCC--EEEE-EeCCCcEEEEEccCCe-eeEEeecCCcCEE
Q 001039 978 ILAAGG-RDAVAN--IWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVIT-GSDDWTARMWSISRGT-CDAVLACHAGPVQ 1050 (1179)
Q Consensus 978 ~l~sgs-~dg~I~--iwD~~~~~~~~~~~~~~~~I~sl~~~~~--~l~s-gs~dg~I~iwd~~~~~-~~~~~~~h~~~V~ 1050 (1179)
.|+.++ .+|.+. +||+.+++ ...+..+...+.+..|+++ .++. +..+|...+|+++... ....+ .+.+ .
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~ 336 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--Y 336 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--C
Confidence 888765 577655 45666655 4455566667778888554 5554 4467888888875422 22222 3443 4
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCC
Q 001039 1051 CVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTG 1130 (1179)
Q Consensus 1051 ~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g 1130 (1179)
+..|+|||++++.++.++ +.+||+.++. ...+. ......-.+++|+|++|+.++.+|.+.+|++... +|
T Consensus 337 ~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~-~~~lt--~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~-------~G 405 (429)
T PRK01742 337 SAQISADGKTLVMINGDN-VVKQDLTSGS-TEVLS--STFLDESPSISPNGIMIIYSSTQGLGKVLQLVSA-------DG 405 (429)
T ss_pred CccCCCCCCEEEEEcCCC-EEEEECCCCC-eEEec--CCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-------CC
Confidence 678999999999888765 5669998743 22221 1222233568999999999999999988876421 33
Q ss_pred CccccceeeeecCCCcccEEEEEEcCC
Q 001039 1131 SKMSGWQLYRTPQKTVAVVRCIASDLE 1157 (1179)
Q Consensus 1131 ~~~~~~~~~~~~~~h~~~V~~v~fspd 1157 (1179)
...+.+..|.+.+...+|||-
T Consensus 406 ------~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 406 ------RFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ------CceEEccCCCCCCCCcccCCC
Confidence 445566678888999999984
No 218
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.47 E-value=8.1e-11 Score=136.14 Aligned_cols=295 Identities=12% Similarity=0.083 Sum_probs=185.7
Q ss_pred eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCC
Q 001039 790 VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPS 869 (1179)
Q Consensus 790 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~ 869 (1179)
|.+.|.++.+ .+..+......-..+.|+ +||+++++++.||.|.++|+.
T Consensus 18 v~viD~~t~~-------------------~~~~i~~~~~~h~~~~~s------------~Dgr~~yv~~rdg~vsviD~~ 66 (369)
T PF02239_consen 18 VAVIDGATNK-------------------VVARIPTGGAPHAGLKFS------------PDGRYLYVANRDGTVSVIDLA 66 (369)
T ss_dssp EEEEETTT-S-------------------EEEEEE-STTEEEEEE-T------------T-SSEEEEEETTSEEEEEETT
T ss_pred EEEEECCCCe-------------------EEEEEcCCCCceeEEEec------------CCCCEEEEEcCCCeEEEEECC
Confidence 8899988776 677777654443445565 899999999999999999976
Q ss_pred CCCceeEEEeccccccE-EEEecCCCEEEEEe-CCCcEEEEECCCCeEEEEeecC-------CCcEEEEEEe-CCCEEEE
Q 001039 870 LRGSELRATLKGHTRTV-RAINSDRGKVVSGS-DDQSVLVWDKQTSQLLEELKGH-------DAQVSCVRML-SGERVLT 939 (1179)
Q Consensus 870 ~~~~~~~~~l~~h~~~v-~~~s~d~~~l~sgs-~dg~I~iwd~~t~~~~~~~~~h-------~~~V~~l~~s-~~~~l~s 939 (1179)
..+.+..++....+. .++++||++++++. .++.+.++|.++.+.++.+... ...+..+..+ ....++.
T Consensus 67 --~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv 144 (369)
T PF02239_consen 67 --TGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVV 144 (369)
T ss_dssp --SSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEE
T ss_pred --cccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEE
Confidence 445566665444433 37899999998775 6899999999999999887543 3456667666 4444555
Q ss_pred EEc-CCeEEEEeCCCCeEEE-EeccCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeEEeec----CCCCeE--
Q 001039 940 ASH-DGTVKMWDVRTDTCVA-TVGRCSSAVLCMEYDDSTGILAAG-GRDAVANIWDIRAGRQMHKFLG----HTKWIR-- 1010 (1179)
Q Consensus 940 gs~-dg~I~iwd~~~~~~~~-~~~~~~~~v~~l~~sp~~~~l~sg-s~dg~I~iwD~~~~~~~~~~~~----~~~~I~-- 1010 (1179)
.-. .+.|.+.|....+... .............|+|++++++++ ..++.|.++|.++++.+..+.. |..+..
T Consensus 145 ~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~ 224 (369)
T PF02239_consen 145 NLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF 224 (369)
T ss_dssp EETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE
T ss_pred EEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc
Confidence 444 5888888987654332 222344567789999999987765 4567999999999887765432 222222
Q ss_pred ---------EEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEE----eCCCcEEEEEcCC
Q 001039 1011 ---------SIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITG----SSDGLLRFWENDD 1077 (1179)
Q Consensus 1011 ---------sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sg----s~Dg~I~iwd~~~ 1077 (1179)
...-.+...++.-..+.+.+||..+.+.++++....++ .-+..+|+++++++. ...+.|.++|.++
T Consensus 225 php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~t 303 (369)
T PF02239_consen 225 PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT 303 (369)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcC
Confidence 22222333333333446678999999999999977666 788889999999988 4568999999998
Q ss_pred CCcceEEEeecccC---ceEEEEecCCCEEEEEECC--CcEEEEeCCCC
Q 001039 1078 AGGIKCVKNVTIHS---SAILSINAGDHWLGIGAAD--NSMSLFHRPQE 1121 (1179)
Q Consensus 1078 ~~~~~~~~~~~~h~---~~i~sis~dg~~lasgs~D--g~I~iwd~~~~ 1121 (1179)
.+....+.... ..-..++++|+.+..+..+ |.|.+||..+.
T Consensus 304 ---l~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 304 ---LKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp ---TEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred ---cceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 45555553222 2235668999977766554 36999998743
No 219
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=3.2e-12 Score=152.61 Aligned_cols=228 Identities=15% Similarity=0.150 Sum_probs=161.2
Q ss_pred eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCC---CcEEEE
Q 001039 790 VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTD---CLVKIW 866 (1179)
Q Consensus 790 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~D---g~I~lW 866 (1179)
|++||.++.. .+.+..|...|.+.+|+ |||+.|+.++.+ ..|++|
T Consensus 186 i~i~d~dg~~--------------------~~~lt~~~~~v~~p~wS------------PDG~~la~~s~~~~~~~i~i~ 233 (429)
T PRK01742 186 VRVADYDGFN--------------------QFIVNRSSQPLMSPAWS------------PDGSKLAYVSFENKKSQLVVH 233 (429)
T ss_pred EEEECCCCCC--------------------ceEeccCCCccccceEc------------CCCCEEEEEEecCCCcEEEEE
Confidence 8999987543 35577888899999998 899999987754 369999
Q ss_pred cCCCCCceeEEEeccccccEEEEecCCCEEEEEe-CCCcEEEE--ECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEE-
Q 001039 867 DPSLRGSELRATLKGHTRTVRAINSDRGKVVSGS-DDQSVLVW--DKQTSQLLEELKGHDAQVSCVRML-SGERVLTAS- 941 (1179)
Q Consensus 867 d~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs-~dg~I~iw--d~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs- 941 (1179)
|+.......+..+.+|... .+++|||+.|+.++ .+|.+.|| |+.+++. ..+..+...+....|+ ++..++.++
T Consensus 234 dl~tg~~~~l~~~~g~~~~-~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~ 311 (429)
T PRK01742 234 DLRSGARKVVASFRGHNGA-PAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSD 311 (429)
T ss_pred eCCCCceEEEecCCCccCc-eeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEEC
Confidence 9874333444555565543 47899999988765 67866555 6666654 4556667778889999 677666554
Q ss_pred cCCeEEEEeCCCC-eEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE--cCCE
Q 001039 942 HDGTVKMWDVRTD-TCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDT 1018 (1179)
Q Consensus 942 ~dg~I~iwd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~--~~~~ 1018 (1179)
.+|...+|++... .....+ .+.. .+..|+|+|+.++.++.++ +.+||+.+++........ ...+..| +++.
T Consensus 312 ~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~ 385 (429)
T PRK01742 312 RSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIM 385 (429)
T ss_pred CCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCE
Confidence 5788888876432 222223 3332 4578999999998887765 556999988754332222 2234455 5568
Q ss_pred EEEEeCCCcEEEEEc--cCCeeeEEeecCCcCEEEEEEecC
Q 001039 1019 VITGSDDWTARMWSI--SRGTCDAVLACHAGPVQCVEYSSS 1057 (1179)
Q Consensus 1019 l~sgs~dg~I~iwd~--~~~~~~~~~~~h~~~V~~l~~spd 1057 (1179)
++.++.+|.+.+|++ .+|.....+..|.+.+...+|+|-
T Consensus 386 i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 386 IIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 999999998888876 357888888888888999999984
No 220
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.46 E-value=1.5e-10 Score=122.11 Aligned_cols=225 Identities=14% Similarity=0.239 Sum_probs=159.7
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeEEEecccccc--EEEEecCCCEEE-EEeCC------CcEEEEECCCCeEEEEe
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRT--VRAINSDRGKVV-SGSDD------QSVLVWDKQTSQLLEEL 919 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~--v~~~s~d~~~l~-sgs~d------g~I~iwd~~t~~~~~~~ 919 (1179)
.|...++.|.++| .+||+.+- .+.....+.+.+. +..+-.-.++++ +||.+ ..+.|||-...+++.++
T Consensus 15 QD~ScFava~~~G-friyn~~P--~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el 91 (346)
T KOG2111|consen 15 QDHSCFAVATDTG-FRIYNCDP--FKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIEL 91 (346)
T ss_pred cCCceEEEEecCc-eEEEecCc--hhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEE
Confidence 7888898888777 89999762 1111112222222 112222334444 44433 47999997777777777
Q ss_pred ecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCC-CCeEEEEeccC--CCcEEEEEEcCCCCEEEE-EeCCCeEEEEeCCC
Q 001039 920 KGHDAQVSCVRMLSGERVLTASHDGTVKMWDVR-TDTCVATVGRC--SSAVLCMEYDDSTGILAA-GGRDAVANIWDIRA 995 (1179)
Q Consensus 920 ~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~-~~~~~~~~~~~--~~~v~~l~~sp~~~~l~s-gs~dg~I~iwD~~~ 995 (1179)
. ...+|.++.+..+. +++. ..+.|.+|... +-+.++.+... .....+++-+.+..+||. |-.-|.|.+-|+..
T Consensus 92 ~-f~~~I~~V~l~r~r-iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~ 168 (346)
T KOG2111|consen 92 S-FNSEIKAVKLRRDR-IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAS 168 (346)
T ss_pred E-eccceeeEEEcCCe-EEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhh
Confidence 6 56789998887554 4433 45789999987 44555555332 233444443334445554 44669999999987
Q ss_pred Cce--eEEeecCCCCeEEEEE--cCCEEEEEeCCCc-EEEEEccCCeeeEEeec--CCcCEEEEEEecCCCEEEEEeCCC
Q 001039 996 GRQ--MHKFLGHTKWIRSIRM--DRDTVITGSDDWT-ARMWSISRGTCDAVLAC--HAGPVQCVEYSSSDRGIITGSSDG 1068 (1179)
Q Consensus 996 ~~~--~~~~~~~~~~I~sl~~--~~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~--h~~~V~~l~~spdg~~l~sgs~Dg 1068 (1179)
.+. ...+..|.+.|.+++. .|..+|++|..|+ |||||..+|+.+.++.. ....|.+++|||++.+|+++|..|
T Consensus 169 ~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg 248 (346)
T KOG2111|consen 169 TKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG 248 (346)
T ss_pred cCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC
Confidence 665 4678899999999998 5779999999998 79999999999999873 345799999999999999999999
Q ss_pred cEEEEEcCCCC
Q 001039 1069 LLRFWENDDAG 1079 (1179)
Q Consensus 1069 ~I~iwd~~~~~ 1079 (1179)
+++|+.++...
T Consensus 249 TlHiF~l~~~~ 259 (346)
T KOG2111|consen 249 TLHIFSLRDTE 259 (346)
T ss_pred eEEEEEeecCC
Confidence 99999998743
No 221
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.45 E-value=6.6e-12 Score=151.67 Aligned_cols=266 Identities=15% Similarity=0.157 Sum_probs=178.4
Q ss_pred EECCCCeEEEEeecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCC-------eEEEEeccCCCcEEEEEEcCCCCE
Q 001039 908 WDKQTSQLLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTD-------TCVATVGRCSSAVLCMEYDDSTGI 978 (1179)
Q Consensus 908 wd~~t~~~~~~~~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~-------~~~~~~~~~~~~v~~l~~sp~~~~ 978 (1179)
|+.+ |..+..+..|...+..++.+ ++.++++||.||+|++||.+.- +...++....+.+.++...+.++.
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 6654 88889999999999999888 3479999999999999998642 233444446788999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCc--e-----eEEeecC-CCCeEEE-EE---cCC-EEEEEeCCCcEEEEEccCCeeeEEee--
Q 001039 979 LAAGGRDAVANIWDIRAGR--Q-----MHKFLGH-TKWIRSI-RM---DRD-TVITGSDDWTARMWSISRGTCDAVLA-- 1043 (1179)
Q Consensus 979 l~sgs~dg~I~iwD~~~~~--~-----~~~~~~~-~~~I~sl-~~---~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~-- 1043 (1179)
+|+++.||.|++.++...+ . ......+ .+.+.++ ++ ... .++.+..-+.|..||+++......++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 9999999999999987621 1 1111111 2233333 22 233 78888889999999998876655544
Q ss_pred cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeec-ccCceEEEE--e---cCCCEEEEEE--CCCcEEE
Q 001039 1044 CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVT-IHSSAILSI--N---AGDHWLGIGA--ADNSMSL 1115 (1179)
Q Consensus 1044 ~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~h~~~i~si--s---~dg~~lasgs--~Dg~I~i 1115 (1179)
...+.|++++.+|.++++++|+..|.+.+||++-+ ..+..+. ++..++..+ . +.....++++ ..+.|.+
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecC---ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence 34678999999999999999999999999999873 3333322 233444333 2 3345555444 5788999
Q ss_pred EeCCCCCcCcccC--CCCccccceeeee--cCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001039 1116 FHRPQERLGGFSG--TGSKMSGWQLYRT--PQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1116 wd~~~~~~~~~~~--~g~~~~~~~~~~~--~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
|++.++......- ++...-.|..... .+.+.-.....++..-+..+.+||.|+.||.||..+
T Consensus 1270 wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred eecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 9998652211111 1111101111110 112222233334444566899999999999999875
No 222
>PF09794 Avl9: Transport protein Avl9; InterPro: IPR018307 This entry represents the late secretory protein Avl9, which is required for the generation of secretory vesicles as well as for actin polarization and polarized growth. Avl9 is involved in exocytic transport from the Golgi. It has been speculated that Avl9 could play a role in deforming membranes for vesicle fission and/or in recruiting cargo [].
Probab=99.44 E-value=8.7e-12 Score=140.67 Aligned_cols=314 Identities=19% Similarity=0.234 Sum_probs=195.6
Q ss_pred EEEEEEccCCCccccCCCCCCCCCccccccccccccccCCC--CCCCCCCCCCCcccCCCceEEeecCCCCCCCCCCCce
Q 001039 6 EYFVVCGIGPEIRTLDGSKGYHGPEYYYLSSVLDQFPPLNH--SLYTPPPPQLSTCVLPAGVQFYSSGFDSDDPSTFPRT 83 (1179)
Q Consensus 6 dyfvvvG~~~~~~~~~~~~~~~~~~~~~~p~vl~~yP~~~~--~~~~~~~~~~~~fc~P~g~~~~~~~~~~~~~~~~p~~ 83 (1179)
-+++|||.+++. -|+|-+-||+... ...+..-..+|.-+||+|.--.. -.+
T Consensus 2 ~~i~vV~Fhh~~----------------G~~vE~~ypp~~~~~~~~~~~~~~LpflAlPDg~h~~~-----------ed~ 54 (379)
T PF09794_consen 2 LCICVVGFHHER----------------GPEVEYWYPPDSSDDPLSPQEWSNLPFLALPDGAHNSE-----------EDF 54 (379)
T ss_pred eEEEEEeccccc----------------CCeEEEEeCCCCCccccchhhHhhCCccccCCccccCC-----------Cce
Confidence 478899988872 2678889995222 22222336788999999973321 113
Q ss_pred eEEEEE-----cCCCCeEEEEEEEeccCCCHH-HHHhccCCCCccCCeEEEEEcCCChHHHHHHHHHHHHHHhhccCCCC
Q 001039 84 YPIVLT-----EGDGSKIYVSCISFRDPVSED-IAEAYRIPANSFADKCICLVSRSPSFRILRNALEEIYSLCFLSDGSS 157 (1179)
Q Consensus 84 f~fvlT-----~~~g~~~Yg~cl~f~e~~~~~-~~~~~~~~~~~~~~~~icllS~~p~~~~f~~~L~~i~~~~~~~~~~~ 157 (1179)
..|.|- ..+....||+.. ++++..+ +.+.-..-...++.||+|+||+.|+|..|++.|..+-..++..+.-.
T Consensus 55 ~yF~l~~~~~~~~~~~~lfGisc--~RQi~~~~L~~~~~dvtRs~vQKsVvViS~~P~fg~~~~kL~~vt~ayF~q~dF~ 132 (379)
T PF09794_consen 55 SYFTLPYDASLNRDATTLFGISC--FRQIKSSDLKNRDPDVTRSTVQKSVVVISRLPFFGLIKEKLSIVTPAYFEQGDFS 132 (379)
T ss_pred EEEEeccCCCCCCCCceeeceee--HhhcCHHHhccCCCcccchheEEEEEEEECCCcHHHHHHHHHHHHHHHHhcCCCc
Confidence 346665 345556687753 4555432 21111112346889999999999999999999999988877533211
Q ss_pred --ccHHHHHHhhcccCCCCCCCCceEEeeeccceeEEeCCCCCCCCCCCcchHHHhccCChhhHHHHHHHHhccccEEEE
Q 001039 158 --KPLWDVISHLVSNVPLPTPGKNRVLFAIENCLLSVEAPPKEGLPHADISFQPLVQLLDVDNLITLFTAVLLERRILLR 235 (1179)
Q Consensus 158 --~~~~~~i~~~l~~~p~P~pg~~~~~~~~~~~~~~~~~p~~~~lp~~~~~~~~l~~~l~~~~~~~l~~~~L~E~~il~~ 235 (1179)
--+++...++-... -+..+.. ....--..+.++..++..+. .+++.||.++|||+||||+
T Consensus 133 ~~~iL~~~~~~L~~~~-~~~~~~~----------------~~~~~~y~glslr~lv~~fr-~~~LvL~K~LLLekKIlfy 194 (379)
T PF09794_consen 133 DTEILEDFYENLNNSF-KSKNGES----------------LQESDLYVGLSLRELVHNFR-HKTLVLFKALLLEKKILFY 194 (379)
T ss_pred hhHHHHHHHHHHHHHh-hcccccc----------------ccchhhhcCCCHHHHHHHHh-HHHHHHHHHHHhcCCeEEE
Confidence 22444444433221 1111100 01112234567889999998 7799999999999999999
Q ss_pred eCCcchHHHHHHHHHHccc----ccC------------------------------------------CCceeecccchh
Q 001039 236 SNKYSLLTLVSEAICHLIY----PFR------------------------------------------WQHVYIPLLFFS 269 (1179)
Q Consensus 236 s~~~~~ls~~~~al~~ll~----P~~------------------------------------------w~~~~IP~lP~~ 269 (1179)
|++.+.++..+.||+||+= .|+ =-+.+-|.+|..
T Consensus 195 ~s~ve~l~~~~~sLiSLiPgli~~L~d~~~p~~~~~~~~~~~~~~~sl~ts~r~s~l~~~GlPL~IF~kg~~f~PYlpLQ 274 (379)
T PF09794_consen 195 GSPVERLCNFQLSLISLIPGLINNLQDSASPLLDSYESNWPLSKPTSLKTSDRKSLLRFYGLPLQIFGKGSLFQPYLPLQ 274 (379)
T ss_pred cCCHHHHHHHHHHHHHHhHHHHHhHhhccCcccchhhhccccCCCcccccCcccchHHHcCCCeeecCCCceecCcccHH
Confidence 9999999999999998741 121 126788999999
Q ss_pred hhhhccCC--cceEEeccCCCCccccCCCcEEEEEcCCCeeeCCCC-C---CCCCchhhhhhHHHHHHhcCCCccccccc
Q 001039 270 GVDYIDAP--TPYMMGLHSGVDTSNLAMDGVVVVDLEYNRICTTEE-I---PPIPEPELSSLRGDILKLLYPNVVGIDRM 343 (1179)
Q Consensus 270 l~~~l~aP--~P~iiGi~~~~~~~~~~~~~~~~vdlD~~~i~~~~~-~---~~lP~~~~~~l~~~l~~~l~~~~~~~~~~ 343 (1179)
.+|.|.++ --|+||............--=++||+|+++|...+. + -.|... -.+....|.+.........+..
T Consensus 275 qld~L~~~~~~s~lvGtTN~Lf~qqk~~~~DvlVdld~~~i~i~d~~L~~~l~LT~~-D~rfid~l~~~v~~~~~~~~~~ 353 (379)
T PF09794_consen 275 QLDLLSDPNTKSYLVGTTNSLFLQQKDLYADVLVDLDTGTIEILDPSLKRALSLTSA-DKRFIDNLVKHVEETWDEADPD 353 (379)
T ss_pred HHHHhhccCccEEEEeeChHHHHhCcccccCEEEEecCCEEEEcCHhHHhhhcCCHH-HHHHHHHHHHHhhccccccccc
Confidence 99999444 579999976542222222012789999999998742 2 122221 1233334443333322211110
Q ss_pred CCCCCCcccccccCCCCchhhhHHHHHHHHHHHHHHHh
Q 001039 344 NAGGSSEHYSKVCSKPWGEEHDLQLRFIFLKFLASILG 381 (1179)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~ir~~Fl~~~~~ll~ 381 (1179)
. ..-+.-|.-||.-|-..+..++.
T Consensus 354 ~--------------~~~~GSddwIR~qFe~Yl~~LLs 377 (379)
T PF09794_consen 354 R--------------TGFEGSDDWIRAQFEDYLLSLLS 377 (379)
T ss_pred c--------------cCCCCcHHHHHHHHHHHHHHHHh
Confidence 0 11124567899999998888864
No 223
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.43 E-value=9.3e-12 Score=131.01 Aligned_cols=234 Identities=15% Similarity=0.197 Sum_probs=181.6
Q ss_pred EEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC-ceeEEEeccccccEEEE--ecCCCEEE
Q 001039 821 RIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG-SELRATLKGHTRTVRAI--NSDRGKVV 897 (1179)
Q Consensus 821 ~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~-~~~~~~l~~h~~~v~~~--s~d~~~l~ 897 (1179)
..+.--..+|+|.+|+ +|+..+|.+.....|.||.....+ .+..++++.|...|+++ ++..+.|+
T Consensus 4 ~~~~~~~~pitchAwn------------~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv 71 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWN------------SDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV 71 (361)
T ss_pred EEeeeccCceeeeeec------------CCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee
Confidence 3444456789999997 899999999999999999987555 67889999999999865 78999999
Q ss_pred EEeCCCcEEEEEC-CCC--eEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEE----EEeccCCCcEEE
Q 001039 898 SGSDDQSVLVWDK-QTS--QLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCV----ATVGRCSSAVLC 969 (1179)
Q Consensus 898 sgs~dg~I~iwd~-~t~--~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~----~~~~~~~~~v~~ 969 (1179)
+|+.|..-++|.. ..+ ++...+..++..++++.|+ .++.+++|+....|.+|-++...-- +.-+.+.+.|.+
T Consensus 72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~s 151 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTS 151 (361)
T ss_pred EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceee
Confidence 9999999999998 444 3444566788999999999 5889999999999999987654432 122346788999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCC-----C-------------CceeEEeecCCCCeEEEEEc--CCEEEEEeCCCcEE
Q 001039 970 MEYDDSTGILAAGGRDAVANIWDIR-----A-------------GRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTAR 1029 (1179)
Q Consensus 970 l~~sp~~~~l~sgs~dg~I~iwD~~-----~-------------~~~~~~~~~~~~~I~sl~~~--~~~l~sgs~dg~I~ 1029 (1179)
++|+|++-++++|+.|+..+++..- . |..+.++....+.+..+.|+ ++.|+-.+.|+++.
T Consensus 152 ldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~ 231 (361)
T KOG1523|consen 152 LDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVS 231 (361)
T ss_pred eeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceE
Confidence 9999999999999999999998641 1 23344444567789999996 77999999999999
Q ss_pred EEEccCCe-eeEEeecCCcCEEEEEEecCCCEEEEEeCC
Q 001039 1030 MWSISRGT-CDAVLACHAGPVQCVEYSSSDRGIITGSSD 1067 (1179)
Q Consensus 1030 iwd~~~~~-~~~~~~~h~~~V~~l~~spdg~~l~sgs~D 1067 (1179)
+-|..... .+.......-+..++.|-.+... +.++.|
T Consensus 232 ~~da~~p~~~v~~~~~~~lP~ls~~~ise~~v-v~ag~~ 269 (361)
T KOG1523|consen 232 FVDAAGPSERVQSVATAQLPLLSVSWISENSV-VAAGYD 269 (361)
T ss_pred EeecCCCchhccchhhccCCceeeEeecCCce-eecCCC
Confidence 99977654 33333333467788888765544 444455
No 224
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.7e-11 Score=137.47 Aligned_cols=278 Identities=12% Similarity=0.183 Sum_probs=197.4
Q ss_pred cccCCcceEEEEEccCCCceeeccC-c--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecc-cCceEEEEeeccc
Q 001039 764 ASGIGRSWVQSMFSREASSRSHSFS-R--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGH-AGAITALHCVTKR 839 (1179)
Q Consensus 764 ~~gh~~~i~~~~fSpdg~~las~~~-d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH-~~~V~~v~~s~~~ 839 (1179)
-.+|...-+.+..||||+|+.+.|. . |++||+..-. ++ +.-| ...|..+...
T Consensus 47 dfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--------------------LK-FERhlDae~V~feiL--- 102 (703)
T KOG2321|consen 47 DFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--------------------LK-FERHLDAEVVDFEIL--- 102 (703)
T ss_pred hcCCccccceeEecCCCcEEEEecccCCceEEEEcccce--------------------ee-eeecccccceeEEEe---
Confidence 3566666677899999999655554 4 9999998543 22 2233 2333333221
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 001039 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEEL 919 (1179)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~ 919 (1179)
+.|-..++--..|.+|-+..-. +......+. ..+.-.+.+.-..-|++++....|+-.+++.|+.+..+
T Consensus 103 --------sDD~SK~v~L~~DR~IefHak~--G~hy~~RIP-~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~ 171 (703)
T KOG2321|consen 103 --------SDDYSKSVFLQNDRTIEFHAKY--GRHYRTRIP-KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPF 171 (703)
T ss_pred --------ccchhhheEeecCceeeehhhc--CeeeeeecC-cCCccccccCCCccEEEeecCcceEEEEcccccccccc
Confidence 2455556666667777766522 221111111 11222234333344556666678999999999999999
Q ss_pred ecCCCcEEEEEEeC-CCEEEEEEcCCeEEEEeCCCCeEEEEecc------CCC-----cEEEEEEcCCCCEEEEEeCCCe
Q 001039 920 KGHDAQVSCVRMLS-GERVLTASHDGTVKMWDVRTDTCVATVGR------CSS-----AVLCMEYDDSTGILAAGGRDAV 987 (1179)
Q Consensus 920 ~~h~~~V~~l~~s~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~------~~~-----~v~~l~~sp~~~~l~sgs~dg~ 987 (1179)
....+.++++..++ ..++++|+.+|.|..||.++...+.++.. +.+ .|+++.|+.+|-.+++|+.+|.
T Consensus 172 ~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~ 251 (703)
T KOG2321|consen 172 ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS 251 (703)
T ss_pred ccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc
Confidence 98889999999984 66788888899999999998776665532 222 4999999999999999999999
Q ss_pred EEEEeCCCCceeEEe-ecCCCCeEEEEEcC----CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEE
Q 001039 988 ANIWDIRAGRQMHKF-LGHTKWIRSIRMDR----DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGII 1062 (1179)
Q Consensus 988 I~iwD~~~~~~~~~~-~~~~~~I~sl~~~~----~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 1062 (1179)
+.|||+++.+++..- .+...+|..+.|.+ +.+++. ....++|||-.+|+....+.. ...++.+|+-|++.+++
T Consensus 252 v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f 329 (703)
T KOG2321|consen 252 VLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFF 329 (703)
T ss_pred EEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc-cCCcCceeeecCCceEE
Confidence 999999998876542 34455888888832 244444 567899999999999888874 44599999999999999
Q ss_pred EEeCCCcEEEEEcCCC
Q 001039 1063 TGSSDGLLRFWENDDA 1078 (1179)
Q Consensus 1063 sgs~Dg~I~iwd~~~~ 1078 (1179)
++-.++.+..|-+..-
T Consensus 330 ~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 330 TANESSKMHTYYIPSL 345 (703)
T ss_pred EecCCCcceeEEcccc
Confidence 9999998888877653
No 225
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.43 E-value=3e-10 Score=131.39 Aligned_cols=306 Identities=13% Similarity=0.146 Sum_probs=193.1
Q ss_pred CCEE-EEEeCCCcEEEEcCCCCCceeEEEecccccc--EEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEE
Q 001039 851 AGFF-ISGSTDCLVKIWDPSLRGSELRATLKGHTRT--VRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVS 927 (1179)
Q Consensus 851 ~~~L-asgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~--v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~ 927 (1179)
++++ ++-..+|.|.+.|.. +.+.+..+...... ...+++||+++++++.||.|.++|+.+++.+.+++... ...
T Consensus 5 ~~l~~V~~~~~~~v~viD~~--t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~ 81 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGA--TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPR 81 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETT--T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEE
T ss_pred ccEEEEEecCCCEEEEEECC--CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccc
Confidence 3444 455668999999965 56666677654332 23568999999999999999999999999999998644 467
Q ss_pred EEEEe-CCCEEEEEE-cCCeEEEEeCCCCeEEEEecc-------CCCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCc
Q 001039 928 CVRML-SGERVLTAS-HDGTVKMWDVRTDTCVATVGR-------CSSAVLCMEYDDSTGILAAGG-RDAVANIWDIRAGR 997 (1179)
Q Consensus 928 ~l~~s-~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~-------~~~~v~~l~~sp~~~~l~sgs-~dg~I~iwD~~~~~ 997 (1179)
+++++ +|+++++++ .++.+.++|.++.+.++.+.. ....+..+..++....++..- ..+.|.+.|....+
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 78888 788887665 689999999999999887743 234677888888888555554 45889999987765
Q ss_pred eeE-EeecCCCCeEEEEEcCC--E-EEEEeCCCcEEEEEccCCeeeEEeec----CCcCEEEEEEecC----------CC
Q 001039 998 QMH-KFLGHTKWIRSIRMDRD--T-VITGSDDWTARMWSISRGTCDAVLAC----HAGPVQCVEYSSS----------DR 1059 (1179)
Q Consensus 998 ~~~-~~~~~~~~I~sl~~~~~--~-l~sgs~dg~I~iwd~~~~~~~~~~~~----h~~~V~~l~~spd----------g~ 1059 (1179)
.+. +............|+++ + +++...++.|-++|..+++.+..+.. |..++..+ .+|. +.
T Consensus 162 ~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~ 240 (369)
T PF02239_consen 162 NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGY 240 (369)
T ss_dssp CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSS
T ss_pred ccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccc
Confidence 433 23334455667778654 4 45556778999999999888776542 33344332 1222 22
Q ss_pred EEEEEeCCCcEEEEEcCCCCcceEEEeecccCceE-EEEecCCCEEEEE----ECCCcEEEEeCCCCCcCcccCCCCccc
Q 001039 1060 GIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAI-LSINAGDHWLGIG----AADNSMSLFHRPQERLGGFSGTGSKMS 1134 (1179)
Q Consensus 1060 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i-~sis~dg~~lasg----s~Dg~I~iwd~~~~~~~~~~~~g~~~~ 1134 (1179)
..++.-..+.+.+||..+ .+.++.+......+ ...+|+++++++. ...++|.++|..+.
T Consensus 241 ~~~~~ig~~~v~v~d~~~---wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl------------- 304 (369)
T PF02239_consen 241 FAIPLIGTDPVSVHDDYA---WKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL------------- 304 (369)
T ss_dssp SEEEEEE--TTT-STTTB---TSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGT-------------
T ss_pred eecccccCCccccchhhc---CeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCc-------------
Confidence 222222333455677776 66777776655554 3448999999998 45589999999743
Q ss_pred cceeeeecC-CCcccEEEEEEcCCCCEEEEEe--CCCcEEEEECCCC
Q 001039 1135 GWQLYRTPQ-KTVAVVRCIASDLERKRICSGG--RNGLLRLWEATIN 1178 (1179)
Q Consensus 1135 ~~~~~~~~~-~h~~~V~~v~fspdg~~Lasgs--~Dg~I~vWdv~tg 1178 (1179)
+...+.. +....+..+.|++||+.+..+. .+|.|.|+|.+|-
T Consensus 305 --~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 305 --KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp --EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred --ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 2333322 2223488999999999765554 3446999999874
No 226
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.39 E-value=3.4e-10 Score=133.40 Aligned_cols=296 Identities=14% Similarity=0.117 Sum_probs=189.2
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEE
Q 001039 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCV 929 (1179)
Q Consensus 850 d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l 929 (1179)
.++.++.++.+|.|..+|.. +.+.+....-..........++..++.++.+|.+..+|..+|+.+....... .+.+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~--tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~ 140 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAE--TGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSP 140 (377)
T ss_pred ECCEEEEECCCCeEEEEEcc--CCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecC
Confidence 36678888889999999965 3333333332222222334567889999999999999999999988765433 22221
Q ss_pred EEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEE-----EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec
Q 001039 930 RMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVL-----CMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG 1004 (1179)
Q Consensus 930 ~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~-----~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~ 1004 (1179)
....++.++.++.+|.+..||.++|+.+........... +... .+..++.+..+|.+..+|.++|+.+.....
T Consensus 141 p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 141 PLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred CEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence 112456788888999999999999998877654332211 1111 124677888889999999999987655321
Q ss_pred CCC-----------CeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEE
Q 001039 1005 HTK-----------WIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFW 1073 (1179)
Q Consensus 1005 ~~~-----------~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iw 1073 (1179)
... ...+....++.+++++.+|.++.||..+|+.+...... ...... .++..++.++.||.+..+
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~ 294 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVAL 294 (377)
T ss_pred ccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEE
Confidence 100 01122345678888999999999999999887765521 112222 346788888899999999
Q ss_pred EcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEE-EE
Q 001039 1074 ENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVR-CI 1152 (1179)
Q Consensus 1074 d~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~-~v 1152 (1179)
|..+++.......+.. ....+....+..+++++.+|.++++|.. +|+ .+.....+...+. +.
T Consensus 295 d~~tG~~~W~~~~~~~--~~~ssp~i~g~~l~~~~~~G~l~~~d~~---------tG~------~~~~~~~~~~~~~~sp 357 (377)
T TIGR03300 295 DRRSGSELWKNDELKY--RQLTAPAVVGGYLVVGDFEGYLHWLSRE---------DGS------FVARLKTDGSGIASPP 357 (377)
T ss_pred ECCCCcEEEccccccC--CccccCEEECCEEEEEeCCCEEEEEECC---------CCC------EEEEEEcCCCccccCC
Confidence 9988542222111111 1111222356789999999999999987 342 2222222332221 22
Q ss_pred EEcCCCCEEEEEeCCCcEEEE
Q 001039 1153 ASDLERKRICSGGRNGLLRLW 1173 (1179)
Q Consensus 1153 ~fspdg~~Lasgs~Dg~I~vW 1173 (1179)
++. + +.|+.++.||.|..+
T Consensus 358 ~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 358 VVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEE-C-CEEEEEeCCceEEEe
Confidence 222 3 358889999998876
No 227
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.38 E-value=1.9e-11 Score=136.26 Aligned_cols=165 Identities=16% Similarity=0.345 Sum_probs=126.2
Q ss_pred cCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEE
Q 001039 827 AGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVL 906 (1179)
Q Consensus 827 ~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~ 906 (1179)
+..|+|+.|-| .+...++.+-.+|.+.+||.. ...+-+.+.....+++..+.....-+.
T Consensus 219 ktsvT~ikWvp-----------g~~~~Fl~a~~sGnlyly~~~--------~~~~~t~p~~~~~k~~~~f~i~t~ksk-- 277 (636)
T KOG2394|consen 219 KSSVTCIKWVP-----------GSDSLFLVAHASGNLYLYDKE--------IVCGATAPSYQALKDGDQFAILTSKSK-- 277 (636)
T ss_pred ccceEEEEEEe-----------CCCceEEEEEecCceEEeecc--------ccccCCCCcccccCCCCeeEEeeeecc--
Confidence 36788888875 455667777778999999842 111222222233455555544332111
Q ss_pred EEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 001039 907 VWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD 985 (1179)
Q Consensus 907 iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~d 985 (1179)
.+..++..+....+.|...+|+ |+.+|++.+.||.++|+|..+.+.+..++..-+...|++|||||++|++|+.|
T Consensus 278 ----~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGED 353 (636)
T KOG2394|consen 278 ----KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGED 353 (636)
T ss_pred ----ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCc
Confidence 1123444444445688899998 89999999999999999999999888888778899999999999999999999
Q ss_pred CeEEEEeCCCCceeEEeecCCCCeEEEEEcC
Q 001039 986 AVANIWDIRAGRQMHKFLGHTKWIRSIRMDR 1016 (1179)
Q Consensus 986 g~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~ 1016 (1179)
..|.||.+...+.+..-++|..+|..++||+
T Consensus 354 DLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 354 DLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEEEeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999999999997
No 228
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.38 E-value=2.1e-11 Score=128.23 Aligned_cols=303 Identities=16% Similarity=0.170 Sum_probs=200.1
Q ss_pred ccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE--EEecCCCEEEEE-eCCCcEEEEECCCCeEEEEeec
Q 001039 845 VGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSG-SDDQSVLVWDKQTSQLLEELKG 921 (1179)
Q Consensus 845 ~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~l~sg-s~dg~I~iwd~~t~~~~~~~~~ 921 (1179)
+.|||+|+++|+++.- .+.|=|.+ +.++.+.+.. -..|. .+..|..+++++ ..|+.|.+|++...+-...+..
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~--tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSE--TLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccc--hhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 4466999999999865 67777744 2222222211 11222 346777666654 6788999999999999889998
Q ss_pred CCCcEEEEEEe-CCCE-EEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCe---EEEEeCCCC
Q 001039 922 HDAQVSCVRML-SGER-VLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAV---ANIWDIRAG 996 (1179)
Q Consensus 922 h~~~V~~l~~s-~~~~-l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~---I~iwD~~~~ 996 (1179)
....+..+.|+ +|.. +.+...+-.|.+|.+.+.+.... ...+..+..++|+|||++.+..+.-.. +.+......
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence 88999999999 5644 55667799999999988776543 344556799999999999988875422 222222334
Q ss_pred ceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 001039 997 RQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEND 1076 (1179)
Q Consensus 997 ~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~ 1076 (1179)
..++.+...+-..+.+.|+|+ +..+.+||.--.-.+..+. -.-.+..++|+|.+++++.|+.|+.+|+-+--
T Consensus 169 ~ll~~f~~dT~DltgieWsPd-------g~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPD-------GNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred HHHHhcCCCcccccCceECCC-------CcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhcee
Confidence 445566666667788888774 4445667632221111221 23568899999999999999999999875422
Q ss_pred CCCc-----------------------------ceE----------------------------EEeecc--------cC
Q 001039 1077 DAGG-----------------------------IKC----------------------------VKNVTI--------HS 1091 (1179)
Q Consensus 1077 ~~~~-----------------------------~~~----------------------------~~~~~~--------h~ 1091 (1179)
+-+. ..+ +..++. ..
T Consensus 241 tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g 320 (447)
T KOG4497|consen 241 TWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCG 320 (447)
T ss_pred eeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccc
Confidence 1000 000 000000 01
Q ss_pred ceEEEEecCCCEEEEEEC--CCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCc
Q 001039 1092 SAILSINAGDHWLGIGAA--DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGL 1169 (1179)
Q Consensus 1092 ~~i~sis~dg~~lasgs~--Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~ 1169 (1179)
....++++|..++++-.+ -+.+.+||++..++.+ .-....+|.+..|+|....|+.+.....
T Consensus 321 ~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~a----------------vLiQk~piraf~WdP~~prL~vctg~sr 384 (447)
T KOG4497|consen 321 AGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHA----------------VLIQKHPIRAFEWDPGRPRLVVCTGKSR 384 (447)
T ss_pred cceeeecCCceEEeeecCCCCceEEEEechhhhhhh----------------hhhhccceeEEEeCCCCceEEEEcCCce
Confidence 122556788888888654 3679999998543311 1123346999999999999998888888
Q ss_pred EEEEECC
Q 001039 1170 LRLWEAT 1176 (1179)
Q Consensus 1170 I~vWdv~ 1176 (1179)
+++|...
T Consensus 385 LY~W~ps 391 (447)
T KOG4497|consen 385 LYFWAPS 391 (447)
T ss_pred EEEEcCC
Confidence 9999764
No 229
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.38 E-value=9.9e-13 Score=144.02 Aligned_cols=262 Identities=15% Similarity=0.229 Sum_probs=203.2
Q ss_pred eEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecccccc
Q 001039 771 WVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDR 848 (1179)
Q Consensus 771 i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s 848 (1179)
-..+.|+.+|..++.|+.. +-..|+.++.. ...+. -...|.++.|-
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L-------------------~~Ei~-v~Etv~Dv~~L------------ 179 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL-------------------HFEIN-VMETVRDVTFL------------ 179 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeeccccee-------------------eeeee-hhhhhhhhhhh------------
Confidence 3668999999999999988 88888887762 22222 24567888886
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE-EEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEE
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR-AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVS 927 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~-~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~ 927 (1179)
.+.+++|++- ...+.|||-. +..++.++.|...-. .|-|.--+|++++..|.++--|+.+|+.+..+....+.+.
T Consensus 180 Hneq~~AVAQ-K~y~yvYD~~---GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~ 255 (545)
T KOG1272|consen 180 HNEQFFAVAQ-KKYVYVYDNN---GTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTD 255 (545)
T ss_pred cchHHHHhhh-hceEEEecCC---CcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccc
Confidence 5667777665 5679999943 334466666654332 5678888899999999999999999999999988888888
Q ss_pred EEEEeC-CCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCC
Q 001039 928 CVRMLS-GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHT 1006 (1179)
Q Consensus 928 ~l~~s~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~ 1006 (1179)
.+.-++ +..+-+|..+|+|.+|.....+++..+..|.++|.++++.++|+++++++.|..++|||+++-..+.++.. .
T Consensus 256 vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p 334 (545)
T KOG1272|consen 256 VMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-P 334 (545)
T ss_pred hhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-C
Confidence 888885 55677899999999999999999988889999999999999999999999999999999999887777655 5
Q ss_pred CCeEEEEEcCCEEEEEeCCCcEEEEEc-cCC--eeeEEeecC--CcCEEEEEEecCCCEEEEEeCCCc
Q 001039 1007 KWIRSIRMDRDTVITGSDDWTARMWSI-SRG--TCDAVLACH--AGPVQCVEYSSSDRGIITGSSDGL 1069 (1179)
Q Consensus 1007 ~~I~sl~~~~~~l~sgs~dg~I~iwd~-~~~--~~~~~~~~h--~~~V~~l~~spdg~~l~sgs~Dg~ 1069 (1179)
.....++++..-+++.+....|.+|.- -.+ ....-+-.| .+.|..+.|.|-...|-.|...|.
T Consensus 335 ~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 335 HPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred CCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence 567778888777777777778999952 221 111111122 458999999998777777666553
No 230
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=5.6e-12 Score=137.71 Aligned_cols=193 Identities=19% Similarity=0.225 Sum_probs=152.9
Q ss_pred ccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEec-
Q 001039 884 RTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVG- 961 (1179)
Q Consensus 884 ~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~- 961 (1179)
..+.+++.+|..+++|+.||++|||++.+...+.....|...|.++.|+ ++..+++.+.| ..+||+.++|..+....
T Consensus 147 ~k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred ceEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 3677889999999999999999999998888888888899999999999 67789999999 89999999997776654
Q ss_pred -cCCCcEEEEEEcCCC---C--EEEEEeCCCeEEEEeCCCCce-----eEEeecCCCCeEEEEE--cCCEEEEEeCCCcE
Q 001039 962 -RCSSAVLCMEYDDST---G--ILAAGGRDAVANIWDIRAGRQ-----MHKFLGHTKWIRSIRM--DRDTVITGSDDWTA 1028 (1179)
Q Consensus 962 -~~~~~v~~l~~sp~~---~--~l~sgs~dg~I~iwD~~~~~~-----~~~~~~~~~~I~sl~~--~~~~l~sgs~dg~I 1028 (1179)
..+.....+.|+.++ . .++.....+.|+.||+...+. ..+.......|++++. ++++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 233456677787776 3 333334456777777654322 1122223346888877 57799999999999
Q ss_pred EEEEccCCeeeEEee-cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1029 RMWSISRGTCDAVLA-CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1029 ~iwd~~~~~~~~~~~-~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
-+++..+.+.+...+ .|...|+.+.|+||.+++++.+.|....+..+.-
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999888776654 7999999999999999999999999888877654
No 231
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.37 E-value=3.1e-11 Score=134.62 Aligned_cols=234 Identities=15% Similarity=0.174 Sum_probs=161.1
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCcee-----EEEeccccccEEEE-----ecCCCEEEEEeCCCcEEEEECCCCeEEEE
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRGSEL-----RATLKGHTRTVRAI-----NSDRGKVVSGSDDQSVLVWDKQTSQLLEE 918 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~~~~-----~~~l~~h~~~v~~~-----s~d~~~l~sgs~dg~I~iwd~~t~~~~~~ 918 (1179)
-.|++|+-.-. ..+.+|+... .... ...+.+-.....++ .+.+--++.|-..|.+.+.|....+..+.
T Consensus 133 ~~gd~lcFnvg-~~lyv~~~~g-~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~skl 210 (636)
T KOG2394|consen 133 GKGDRLCFNVG-RELYVYSYRG-AADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKL 210 (636)
T ss_pred CCCCEEEEecC-CeEEEEEccC-cchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHh
Confidence 55666655432 3588888652 1111 12233333333344 36677788898899999998765322211
Q ss_pred e----ecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 001039 919 L----KGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWD 992 (1179)
Q Consensus 919 ~----~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD 992 (1179)
+ ......|+|+.|- ++..++++-.+|.+.+||... ... ..-.+-...+++..+......+.
T Consensus 211 fne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~-~t~p~~~~~k~~~~f~i~t~ksk----- 277 (636)
T KOG2394|consen 211 FNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCG-ATAPSYQALKDGDQFAILTSKSK----- 277 (636)
T ss_pred hhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------ccc-CCCCcccccCCCCeeEEeeeecc-----
Confidence 1 1234789999998 566788888999999998621 000 01111222345555544332111
Q ss_pred CCCCceeEEeecCCCCeEEEEEc--CCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcE
Q 001039 993 IRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLL 1070 (1179)
Q Consensus 993 ~~~~~~~~~~~~~~~~I~sl~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I 1070 (1179)
.+..++..+.-..+.|..++|+ +.+||+.+.||.+||+|..+.+.+..++..-+...|++|||||++|++|++|.-|
T Consensus 278 -~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLV 356 (636)
T KOG2394|consen 278 -KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLV 356 (636)
T ss_pred -ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceE
Confidence 1224555555555688888884 5599999999999999999998888888888999999999999999999999999
Q ss_pred EEEEcCCCCcceEEEeecccCceEEEEecCC
Q 001039 1071 RFWENDDAGGIKCVKNVTIHSSAILSINAGD 1101 (1179)
Q Consensus 1071 ~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg 1101 (1179)
.||.+.. .+.+..-.+|.++|..+..|.
T Consensus 357 tVwSf~e---rRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 357 TVWSFEE---RRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEEecc---ceEEEeccccccceeeEeecc
Confidence 9999988 688888899999999988775
No 232
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=4.5e-12 Score=140.99 Aligned_cols=162 Identities=20% Similarity=0.346 Sum_probs=130.5
Q ss_pred EEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEe-ccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEE
Q 001039 916 LEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV-GRCSSAVLCMEYDD--STGILAAGGRDAVANIW 991 (1179)
Q Consensus 916 ~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~~~~v~~l~~sp--~~~~l~sgs~dg~I~iw 991 (1179)
...+.||.+.|+|+.|+ +|..|++|+.|-.+.|||.-..+.+..+ .+|...|.++.|-| +.+.+++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 35678999999999999 8999999999999999999988888777 47899999999999 56788999999999999
Q ss_pred eCCCC----------ceeEEeecCCCCeEEEEE---cCCEEEEEeCCCcEEEEEccCCeee-E---------EeecCCcC
Q 001039 992 DIRAG----------RQMHKFLGHTKWIRSIRM---DRDTVITGSDDWTARMWSISRGTCD-A---------VLACHAGP 1048 (1179)
Q Consensus 992 D~~~~----------~~~~~~~~~~~~I~sl~~---~~~~l~sgs~dg~I~iwd~~~~~~~-~---------~~~~h~~~ 1048 (1179)
|+... +....+..|...|..++. .|+.+.++++||+|+-+|++..... . .+...--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 99852 234456678888888887 3569999999999999999863211 1 11112234
Q ss_pred EEEEEEecCC-CEEEEEeCCCcEEEEEcCC
Q 001039 1049 VQCVEYSSSD-RGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1049 V~~l~~spdg-~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
..++..+|.. .+|++|+.|-..++||.+.
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence 6788899964 5788999999999999643
No 233
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=6.6e-11 Score=127.88 Aligned_cols=242 Identities=13% Similarity=0.146 Sum_probs=182.8
Q ss_pred ccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCcee----EEEeccccccEEEEecCCCEEEEEeC
Q 001039 826 HAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSEL----RATLKGHTRTVRAINSDRGKVVSGSD 901 (1179)
Q Consensus 826 H~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~----~~~l~~h~~~v~~~s~d~~~l~sgs~ 901 (1179)
-...|++++|.. .+..+.+...+.|..+....+....... .......+..|..+...+..|++|-.
T Consensus 54 ~~~ris~l~~~~----------d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~ 123 (412)
T KOG3881|consen 54 ELDRISSLLFGV----------DGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVS 123 (412)
T ss_pred hhhhhhhheeec----------CCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEec
Confidence 345677787752 2455666666677777777654221111 11344556667677777788999999
Q ss_pred CCcEEEEECCCCe----EEEEeecCCCcEEEEEEe--CCCEEEEEEcC--CeEEEEeCCCCeEEEEeccC---------C
Q 001039 902 DQSVLVWDKQTSQ----LLEELKGHDAQVSCVRML--SGERVLTASHD--GTVKMWDVRTDTCVATVGRC---------S 964 (1179)
Q Consensus 902 dg~I~iwd~~t~~----~~~~~~~h~~~V~~l~~s--~~~~l~sgs~d--g~I~iwd~~~~~~~~~~~~~---------~ 964 (1179)
+|.+.+|..+.+. .+..+..+ ..+..+.-+ ....+++|+.. ..+.+||+++.+.+..-+.. .
T Consensus 124 sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVP 202 (412)
T KOG3881|consen 124 SGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVP 202 (412)
T ss_pred CCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceee
Confidence 9999999988443 22233322 345555555 34567779988 88999999998777665432 2
Q ss_pred CcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCC-ceeEEeecCCCCeEEEEE--cCCEEEEEeCCCcEEEEEccCCeee
Q 001039 965 SAVLCMEYDDS--TGILAAGGRDAVANIWDIRAG-RQMHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSISRGTCD 1039 (1179)
Q Consensus 965 ~~v~~l~~sp~--~~~l~sgs~dg~I~iwD~~~~-~~~~~~~~~~~~I~sl~~--~~~~l~sgs~dg~I~iwd~~~~~~~ 1039 (1179)
-.++.+.|-+. ...+++++.-+.+++||.+.+ +++..+.....+++++.. +++.+++|...|.+..+|+++++..
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceee
Confidence 35678889887 889999999999999999976 457777777788888876 6679999999999999999999988
Q ss_pred EE-eecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 001039 1040 AV-LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDA 1078 (1179)
Q Consensus 1040 ~~-~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~ 1078 (1179)
.. +.+-.+.|+++..+|.++++++++-|..|||+|+++.
T Consensus 283 g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 283 GCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred ccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 77 8889999999999999999999999999999999983
No 234
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.4e-09 Score=122.88 Aligned_cols=303 Identities=12% Similarity=0.129 Sum_probs=194.4
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEE-----eC-----CCcEEEEECCCCeEEEE
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSG-----SD-----DQSVLVWDKQTSQLLEE 918 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sg-----s~-----dg~I~iwd~~t~~~~~~ 918 (1179)
++|+++|-+. +..++|++..... .+.+...-...-..++|.|.+|.+- .. .-.+.+|++.++.....
T Consensus 44 ~~G~lfA~~~-~~~v~i~~~~~~~--~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~ 120 (566)
T KOG2315|consen 44 NNGRLFAYSD-NQVVKVFEIATLK--VVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQ 120 (566)
T ss_pred CCCcEEEEEc-CCeEEEEEccCCc--EEEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhh
Confidence 7787777665 6679999976332 2222222222222468888888752 11 24577999999766655
Q ss_pred eecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCC--EEEE-----EeCCCeEEEE
Q 001039 919 LKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTG--ILAA-----GGRDAVANIW 991 (1179)
Q Consensus 919 ~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~--~l~s-----gs~dg~I~iw 991 (1179)
+......-++..|+.++.+++--..+.+.+|+..+.+.+.. +-|...|..+.+||.+. .+|+ +|.-+.+++|
T Consensus 121 ~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~ 199 (566)
T KOG2315|consen 121 IQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIY 199 (566)
T ss_pred eehhhhcCcccccccchhhhhhhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEe
Confidence 55444344788999776666666678899999887443322 23567889999998733 3332 2445689999
Q ss_pred eCCCCceeEEe---ecCCCCeEEEEEcCC---E--EEEEeCC---------CcEEEEEccCCeeeEEeecCCcCEEEEEE
Q 001039 992 DIRAGRQMHKF---LGHTKWIRSIRMDRD---T--VITGSDD---------WTARMWSISRGTCDAVLACHAGPVQCVEY 1054 (1179)
Q Consensus 992 D~~~~~~~~~~---~~~~~~I~sl~~~~~---~--l~sgs~d---------g~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 1054 (1179)
.......-..+ .-....-..+.|+.. + |++..-| .++++.++....+...+. ..++|.++.|
T Consensus 200 ~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W 278 (566)
T KOG2315|consen 200 KYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTW 278 (566)
T ss_pred ccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEE
Confidence 87632211111 001112234556432 2 2333223 368888887434443343 5899999999
Q ss_pred ecCCCEEEE--EeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECC---CcEEEEeCCCCCcCcccCC
Q 001039 1055 SSSDRGIIT--GSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAAD---NSMSLFHRPQERLGGFSGT 1129 (1179)
Q Consensus 1055 spdg~~l~s--gs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~D---g~I~iwd~~~~~~~~~~~~ 1129 (1179)
+|+|+-+++ |-.-.++.|+|++. ..+..+........-++|.|++++.++-+ |.|.|||+.+.
T Consensus 279 ~~s~~EF~VvyGfMPAkvtifnlr~----~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~-------- 346 (566)
T KOG2315|consen 279 SPSGREFAVVYGFMPAKVTIFNLRG----KPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR-------- 346 (566)
T ss_pred CCCCCEEEEEEecccceEEEEcCCC----CEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccch--------
Confidence 999987654 55677899999986 56666655555556679999999987754 88999999854
Q ss_pred CCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeC------CCcEEEEECCC
Q 001039 1130 GSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGR------NGLLRLWEATI 1177 (1179)
Q Consensus 1130 g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~------Dg~I~vWdv~t 1177 (1179)
+++..+... .-+-+.|+|||++++|++. |..++||+...
T Consensus 347 -------K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 347 -------KLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred -------hhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 233333222 2456789999999999863 78899999754
No 235
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.34 E-value=2.2e-11 Score=129.22 Aligned_cols=336 Identities=15% Similarity=0.233 Sum_probs=217.0
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEE
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKV 896 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l 896 (1179)
.++.+.||.+.|++...- |...-+++.+.|.++|||--...+............++++ ...+...|
T Consensus 16 ll~~~eG~~d~vn~~~l~------------~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L 83 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILI------------PKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRL 83 (404)
T ss_pred hhhhhcCchhhhhhheec------------cCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEE
Confidence 567889999999988776 5667789999999999997432222111122222334444 46778889
Q ss_pred EEEeCCCcEEEEEC----CCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEE
Q 001039 897 VSGSDDQSVLVWDK----QTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCME 971 (1179)
Q Consensus 897 ~sgs~dg~I~iwd~----~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~ 971 (1179)
++|-..|++.-+.+ +.....+....|...+..+-|+ +...+++.+.|..+.---.+.+..+..+.- ....+++.
T Consensus 84 ~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~ 162 (404)
T KOG1409|consen 84 YVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQ 162 (404)
T ss_pred EEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCc
Confidence 99999999988865 3445666777899999999998 788899999887765554555544332210 01111111
Q ss_pred EcCCCCEEEEEeCCCeEEEEeC--CCCceeEEeecCCCCeEEEEEcCC--EEEEEeCCCcEEEEEccCCe-eeEEeecCC
Q 001039 972 YDDSTGILAAGGRDAVANIWDI--RAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGT-CDAVLACHA 1046 (1179)
Q Consensus 972 ~sp~~~~l~sgs~dg~I~iwD~--~~~~~~~~~~~~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~-~~~~~~~h~ 1046 (1179)
++-. +...|...|.|.+-.+ ..-..+.++.+|.+.+.+++|++. .+.+|..|..+.+||+-.++ ......+|.
T Consensus 163 ~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~ 240 (404)
T KOG1409|consen 163 FDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHN 240 (404)
T ss_pred eeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccch
Confidence 1111 4455666666655443 345678889999999999999764 89999999999999997554 345677899
Q ss_pred cCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceE--EE------------------------eecccC-----ceEE
Q 001039 1047 GPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKC--VK------------------------NVTIHS-----SAIL 1095 (1179)
Q Consensus 1047 ~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~--~~------------------------~~~~h~-----~~i~ 1095 (1179)
..|..+..-+.-+.+++++.||.|.+|+++....... +. .+..|. ..+.
T Consensus 241 ~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc 320 (404)
T KOG1409|consen 241 DKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVC 320 (404)
T ss_pred hhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcC
Confidence 9999999988899999999999999999986321000 00 000010 0111
Q ss_pred EE-ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001039 1096 SI-NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1174 (1179)
Q Consensus 1096 si-s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWd 1174 (1179)
.. +.+.....+-+..-.+|+.|.-...+..... ..+..+..-...|+.+.+..+-.+|+|+|.|..|+|||
T Consensus 321 ~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~--------t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd 392 (404)
T KOG1409|consen 321 GKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEER--------TPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWD 392 (404)
T ss_pred cccccCccccccccceeEEEEecccchhhhcCCC--------CccccccccccceeEEEhhhhccceeecCCceEEEEEe
Confidence 11 1111122222233445555543221110000 11222322334688999988888999999999999999
Q ss_pred CCC
Q 001039 1175 ATI 1177 (1179)
Q Consensus 1175 v~t 1177 (1179)
+..
T Consensus 393 ~~~ 395 (404)
T KOG1409|consen 393 VRS 395 (404)
T ss_pred chh
Confidence 864
No 236
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.34 E-value=7.7e-10 Score=123.30 Aligned_cols=311 Identities=11% Similarity=0.122 Sum_probs=216.1
Q ss_pred CcceEEEEEccCCCceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecccc
Q 001039 768 GRSWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVG 846 (1179)
Q Consensus 768 ~~~i~~~~fSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~ 846 (1179)
.-++..+.|||.|+++++.... |.+|+-.... .+..+. | ..|..+.|+
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~-------------------~l~~~~-~-~~V~~~~fS---------- 80 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAGVECWGGPSKA-------------------KLVRFR-H-PDVKYLDFS---------- 80 (561)
T ss_pred CcchhheeecCcchheehhhccceEEccccchh-------------------heeeee-c-CCceecccC----------
Confidence 3556677999999999999888 9999876544 222222 2 346777776
Q ss_pred ccCCCCEEEEEeCCC---------------cEEEEcCCCCCceeEEEecccccc-----EEEEecCCCEEEEEeCCCcEE
Q 001039 847 DREDAGFFISGSTDC---------------LVKIWDPSLRGSELRATLKGHTRT-----VRAINSDRGKVVSGSDDQSVL 906 (1179)
Q Consensus 847 ~s~d~~~Lasgs~Dg---------------~I~lWd~~~~~~~~~~~l~~h~~~-----v~~~s~d~~~l~sgs~dg~I~ 906 (1179)
|.+++|.|-+..+ .+.+||.. ++.++..+.+-..+ +..++.+++++|-.. ...++
T Consensus 81 --P~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~--sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~ 155 (561)
T COG5354 81 --PNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA--SGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLY 155 (561)
T ss_pred --cccceeeeeccCCccChhhccCCccccCceeEEecc--CceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEE
Confidence 8999999876544 49999976 66666777665554 667788888877653 34699
Q ss_pred EEECCCCeEE-EEeecC-CCcEEEEEEeCC---CEEEE-----EEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCC
Q 001039 907 VWDKQTSQLL-EELKGH-DAQVSCVRMLSG---ERVLT-----ASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDST 976 (1179)
Q Consensus 907 iwd~~t~~~~-~~~~~h-~~~V~~l~~s~~---~~l~s-----gs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~ 976 (1179)
|+++ ++... ..+..- ...|....++++ ..++. .+.++++++|.+..++.+.+..-....-..+.|.+.|
T Consensus 156 i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g 234 (561)
T COG5354 156 IHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLG 234 (561)
T ss_pred EEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCC
Confidence 9997 33221 111111 245666666642 33332 4567889999998777665544333344678888888
Q ss_pred CEEEEEe-----------CCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC----EEEEEeCCCcEEEEEccCCeeeEE
Q 001039 977 GILAAGG-----------RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD----TVITGSDDWTARMWSISRGTCDAV 1041 (1179)
Q Consensus 977 ~~l~sgs-----------~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~----~l~sgs~dg~I~iwd~~~~~~~~~ 1041 (1179)
+++++-- ....+++++++... +.....-.++|..++|++. -+++|-.+..+.++|++.. ....
T Consensus 235 ~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~ 312 (561)
T COG5354 235 KYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY 312 (561)
T ss_pred ceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEe
Confidence 8776431 12468888887433 3333366889999999543 4556678899999998866 3322
Q ss_pred eecCCcCEEEEEEecCCCEEEEEeCC---CcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEE------CCCc
Q 001039 1042 LACHAGPVQCVEYSSSDRGIITGSSD---GLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGA------ADNS 1112 (1179)
Q Consensus 1042 ~~~h~~~V~~l~~spdg~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs------~Dg~ 1112 (1179)
.....=+.+.|+|.+++++.++-| |.+.+||.... ..++..+.+.+...+.++||++++.+.. .|..
T Consensus 313 --~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r--f~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~ 388 (561)
T COG5354 313 --FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR--FKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNS 388 (561)
T ss_pred --cCCcccccccccCcccEEEEecCCccccceEEeccCCc--eEEEEEeecCCceEeeccCCceEEEecCCCcccccCcc
Confidence 345566788999999999987754 67999998762 5667678888888899999999988765 3789
Q ss_pred EEEEeCCCC
Q 001039 1113 MSLFHRPQE 1121 (1179)
Q Consensus 1113 I~iwd~~~~ 1121 (1179)
|.|||+.+.
T Consensus 389 i~l~~v~g~ 397 (561)
T COG5354 389 IKLWDVYGA 397 (561)
T ss_pred eEEEEecCc
Confidence 999999743
No 237
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.34 E-value=9.7e-10 Score=116.11 Aligned_cols=280 Identities=12% Similarity=0.203 Sum_probs=183.9
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCc--EEEEEEeCCCEEE-EEEcC------CeEEEEeCCCCeEE
Q 001039 887 RAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQ--VSCVRMLSGERVL-TASHD------GTVKMWDVRTDTCV 957 (1179)
Q Consensus 887 ~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~--V~~l~~s~~~~l~-sgs~d------g~I~iwd~~~~~~~ 957 (1179)
.+|+.|...+++|..+| .+||+.+--+.....+.+.+. +.-+-| -.++++ +||.+ +.|.|||=...+++
T Consensus 11 vs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf-R~N~laLVGGg~~pky~pNkviIWDD~k~~~i 88 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF-RSNYLALVGGGSRPKYPPNKVIIWDDLKERCI 88 (346)
T ss_pred EEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh-hhceEEEecCCCCCCCCCceEEEEecccCcEE
Confidence 46778888888888777 899998764332222222222 222222 233433 44443 57999997777777
Q ss_pred EEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCceeEEeec--CCCCeEEEEEcCC--EEEE-EeCCCcEEEE
Q 001039 958 ATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR-AGRQMHKFLG--HTKWIRSIRMDRD--TVIT-GSDDWTARMW 1031 (1179)
Q Consensus 958 ~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~-~~~~~~~~~~--~~~~I~sl~~~~~--~l~s-gs~dg~I~iw 1031 (1179)
.++ ...++|.++.+.++. +++.- .+.|.+|... +.+.++.+.. ......+++...+ .|+. |-.-|.|+|-
T Consensus 89 ~el-~f~~~I~~V~l~r~r--iVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~ 164 (346)
T KOG2111|consen 89 IEL-SFNSEIKAVKLRRDR--IVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIV 164 (346)
T ss_pred EEE-EeccceeeEEEcCCe--EEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEE
Confidence 777 457889999998764 55544 5789999987 5566666543 2334555554322 4443 4466999999
Q ss_pred EccCCee--eEEeecCCcCEEEEEEecCCCEEEEEeCCCc-EEEEEcCCCCcceEEEeecccCceEE--EEecCCCEEEE
Q 001039 1032 SISRGTC--DAVLACHAGPVQCVEYSSSDRGIITGSSDGL-LRFWENDDAGGIKCVKNVTIHSSAIL--SINAGDHWLGI 1106 (1179)
Q Consensus 1032 d~~~~~~--~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~-I~iwd~~~~~~~~~~~~~~~h~~~i~--sis~dg~~las 1106 (1179)
|+...+. ...+.+|.+.|.|++.+-+|..+||+|..|+ |||||..+++....++.-. ....++ ++||++.+||+
T Consensus 165 dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-d~A~iy~iaFSp~~s~Lav 243 (346)
T KOG2111|consen 165 DLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-DRADIYCIAFSPNSSWLAV 243 (346)
T ss_pred EhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-chheEEEEEeCCCccEEEE
Confidence 9987665 4778899999999999999999999999997 8999999966555544322 233444 45899999999
Q ss_pred EECCCcEEEEeCCCCCcCcc--cCCC-------Cccc-cceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001039 1107 GAADNSMSLFHRPQERLGGF--SGTG-------SKMS-GWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1174 (1179)
Q Consensus 1107 gs~Dg~I~iwd~~~~~~~~~--~~~g-------~~~~-~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWd 1174 (1179)
+|+.|+++||.+.......- +... .... .|... .+.-..+...-++|..+.+.++..+.||+-+-+.
T Consensus 244 sSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~-~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~ 320 (346)
T KOG2111|consen 244 SSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFA-KFQLPQGTQCIIAFGSETNTVIAICADGSYYKFK 320 (346)
T ss_pred EcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEE-EEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEE
Confidence 99999999999875332111 0000 0000 12221 1222244566778888867777778888765443
No 238
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=2.2e-10 Score=128.76 Aligned_cols=273 Identities=13% Similarity=0.218 Sum_probs=193.4
Q ss_pred cccCceEEEEeecccceeccccccCCCCEE-EEEeCCCcEEEEcCCCCCceeEEEeccccc-cEE---EEecCCCEEEEE
Q 001039 825 GHAGAITALHCVTKREVWDLVGDREDAGFF-ISGSTDCLVKIWDPSLRGSELRATLKGHTR-TVR---AINSDRGKVVSG 899 (1179)
Q Consensus 825 gH~~~V~~v~~s~~~~~~~~~~~s~d~~~L-asgs~Dg~I~lWd~~~~~~~~~~~l~~h~~-~v~---~~s~d~~~l~sg 899 (1179)
+|...-+.|..+ |||+|+ |||..--.|++||+..-.. .+..|.. .+. -++-|-..++.-
T Consensus 49 e~p~ast~ik~s------------~DGqY~lAtG~YKP~ikvydlanLSL----KFERhlDae~V~feiLsDD~SK~v~L 112 (703)
T KOG2321|consen 49 EMPTASTRIKVS------------PDGQYLLATGTYKPQIKVYDLANLSL----KFERHLDAEVVDFEILSDDYSKSVFL 112 (703)
T ss_pred CCccccceeEec------------CCCcEEEEecccCCceEEEEccccee----eeeecccccceeEEEeccchhhheEe
Confidence 466777788776 899986 5666788999999763222 3333432 222 236666667777
Q ss_pred eCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCE
Q 001039 900 SDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI 978 (1179)
Q Consensus 900 s~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 978 (1179)
..|.+|.+... .|..... .. ...-..++++ ...-+++++....|.-++++.|..+..+....+.++++..++-..+
T Consensus 113 ~~DR~IefHak-~G~hy~~-RI-P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgL 189 (703)
T KOG2321|consen 113 QNDRTIEFHAK-YGRHYRT-RI-PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGL 189 (703)
T ss_pred ecCceeeehhh-cCeeeee-ec-CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccce
Confidence 77888776543 2332211 11 1123455566 4444666666678899999999999998888899999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEee------cCCC-----CeEEEEEcCC--EEEEEeCCCcEEEEEccCCeeeEEee-c
Q 001039 979 LAAGGRDAVANIWDIRAGRQMHKFL------GHTK-----WIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLA-C 1044 (1179)
Q Consensus 979 l~sgs~dg~I~iwD~~~~~~~~~~~------~~~~-----~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~-~ 1044 (1179)
|++|+.+|.|..||.++...+..+. .|.+ .|+++.|+.+ .+++|+.+|.+.|||++..+++..-. +
T Consensus 190 la~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~ 269 (703)
T KOG2321|consen 190 LACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG 269 (703)
T ss_pred EEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccC
Confidence 9999999999999999877666553 2222 4899999654 89999999999999999988766544 3
Q ss_pred CCcCEEEEEEecC--CCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCC
Q 001039 1045 HAGPVQCVEYSSS--DRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1045 h~~~V~~l~~spd--g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
...+|..+.|.+. ++.+++. ....++|||-.++.....+... +.-.-.|+-|++.++.+|-.++.+..|=++
T Consensus 270 ~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt--~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 270 YELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT--SDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred CccceeeecccccCCCceEEec-chHHhhhcccccCCceeecccc--CCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 4568899999775 4445544 4567999999986544433221 222335667899999999999998888776
No 239
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=7.7e-10 Score=118.22 Aligned_cols=276 Identities=14% Similarity=0.205 Sum_probs=176.1
Q ss_pred cCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEecc-ccccEEE--EecC-CCEEEEEeCC
Q 001039 827 AGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKG-HTRTVRA--INSD-RGKVVSGSDD 902 (1179)
Q Consensus 827 ~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~-h~~~v~~--~s~d-~~~l~sgs~d 902 (1179)
+..+..++|+ +.-..+|++..|-+|++||-+. .....++. ....|.| +-|. ++.++.|+..
T Consensus 98 ~~dlr~~aWh------------qH~~~fava~nddvVriy~kss---t~pt~Lks~sQrnvtclawRPlsaselavgCr~ 162 (445)
T KOG2139|consen 98 EIDLRGVAWH------------QHIIAFAVATNDDVVRIYDKSS---TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA 162 (445)
T ss_pred hcceeeEeec------------hhhhhhhhhccCcEEEEeccCC---CCCceecchhhcceeEEEeccCCcceeeeeecc
Confidence 4456677776 4455678899999999999653 22223332 2334554 4554 4567777765
Q ss_pred CcEEEEECCCC----eE----------EEEeecCCCcEEEEEEe-CCCEEEEEEc-CCeEEEEeCCCCeEEEEeccCCCc
Q 001039 903 QSVLVWDKQTS----QL----------LEELKGHDAQVSCVRML-SGERVLTASH-DGTVKMWDVRTDTCVATVGRCSSA 966 (1179)
Q Consensus 903 g~I~iwd~~t~----~~----------~~~~~~h~~~V~~l~~s-~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~~~ 966 (1179)
-|.+|..... +. +....+| ..|+++.|. +|..+++++. |..|.+||..++..+.......+.
T Consensus 163 -gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg 240 (445)
T KOG2139|consen 163 -GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGG 240 (445)
T ss_pred -eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCc
Confidence 5899976431 11 1122344 689999999 7888888774 678999999999887766556678
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC---EEEEEeCCCcEEEEEccC--Ce----
Q 001039 967 VLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD---TVITGSDDWTARMWSISR--GT---- 1037 (1179)
Q Consensus 967 v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~---~l~sgs~dg~I~iwd~~~--~~---- 1037 (1179)
+.-+.|||||.++++++-|+..++|+..............+.|....|++. .+++.+..-.++-..... +.
T Consensus 241 ~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~ 320 (445)
T KOG2139|consen 241 FSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRP 320 (445)
T ss_pred eeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCc
Confidence 999999999999999999999999965543333333334448888888654 455554443333222111 00
Q ss_pred -------eeEEee-----c----CCcCEEEEEEecCCCEEEEEeCCC--------cEEEEEcCCCCcceEE--EeecccC
Q 001039 1038 -------CDAVLA-----C----HAGPVQCVEYSSSDRGIITGSSDG--------LLRFWENDDAGGIKCV--KNVTIHS 1091 (1179)
Q Consensus 1038 -------~~~~~~-----~----h~~~V~~l~~spdg~~l~sgs~Dg--------~I~iwd~~~~~~~~~~--~~~~~h~ 1091 (1179)
.+..+. . -.+.+.+++|+|.|.++++.-..+ .|.+||.......... ....+..
T Consensus 321 ~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~ 400 (445)
T KOG2139|consen 321 QSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEY 400 (445)
T ss_pred ccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCC
Confidence 011111 1 146788999999999999876543 3667887763322222 1122223
Q ss_pred ceEEEEec---CCCEEEEEECCCcEEEEeCC
Q 001039 1092 SAILSINA---GDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1092 ~~i~sis~---dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
....+++| ++.+|.++=..|.+.-|++.
T Consensus 401 P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 401 PAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 33455543 67788888788888888764
No 240
>PF03455 dDENN: dDENN domain; InterPro: IPR005112 This region is always found associated with IPR001194 from INTERPRO. It is predicted to form a globular domain that is completely alpha helical []. Although not statistically supported it has been suggested that this domain may be similar to members of the Rho/Rac/Cdc42 GEF family [].; PDB: 3TW8_A.
Probab=99.30 E-value=1e-12 Score=112.56 Aligned_cols=65 Identities=35% Similarity=0.710 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHHHHHHhhHHhcccccCc---cccChHHHhcccccCCCCCCchHHHHHHHHhHHHHHHHcc
Q 001039 364 HDLQLRFIFLKFLASILGGYRNFIENTGT---QVFNAQAFLKKRSRSTNQPPDPMITQFLDSQGFLDYLERG 432 (1179)
Q Consensus 364 ~~~~ir~~Fl~~~~~ll~~y~~~l~~~~~---~~F~~~~Fl~~~~~~~~~~~~~F~~~f~~tq~F~~Fie~~ 432 (1179)
+|.+||++|+++|+.||++|++|+..... ..||+++|+++++.. .++|++.|++||||+.|||+|
T Consensus 1 ~d~~Ir~~Fl~~f~~ll~~Yr~~~~~~~~~~~~~F~~~~Fl~~~~~~----~~~Fl~~f~~TQ~F~~Fi~~R 68 (68)
T PF03455_consen 1 LDDQIREAFLRFFVSLLGNYREYLIYDRQSPRVIFDKEAFLKSRPKE----SRPFLKAFLETQMFEQFIEER 68 (68)
T ss_dssp --THHHHHHHHHHHHHHGGGGGG-------------HHHHS--SSHH----HHHHHHHHTT-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceeccHHHHhcCChh----HhHHHHHHHHHHhHHHHHhcC
Confidence 36789999999999999999999987643 489999999998776 679999999999999999875
No 241
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=1.5e-10 Score=125.08 Aligned_cols=236 Identities=12% Similarity=0.163 Sum_probs=166.8
Q ss_pred CcEEEEEEe-CC--CEEEEEEcCCeEEEEeCCCCeEEEEe------ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 001039 924 AQVSCVRML-SG--ERVLTASHDGTVKMWDVRTDTCVATV------GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR 994 (1179)
Q Consensus 924 ~~V~~l~~s-~~--~~l~sgs~dg~I~iwd~~~~~~~~~~------~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~ 994 (1179)
..+..++|. ++ ..+...+.|..+..+++....+.... ......|..++.. ...|++|..+|.+.+|..+
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEecc
Confidence 456666665 22 23334445666666666555443332 2334455555543 3357788889999999988
Q ss_pred CCc----eeEEeecCCCCeEEEEE---cCCEEEEEeCC--CcEEEEEccCCeeeEEeecC---------CcCEEEEEEec
Q 001039 995 AGR----QMHKFLGHTKWIRSIRM---DRDTVITGSDD--WTARMWSISRGTCDAVLACH---------AGPVQCVEYSS 1056 (1179)
Q Consensus 995 ~~~----~~~~~~~~~~~I~sl~~---~~~~l~sgs~d--g~I~iwd~~~~~~~~~~~~h---------~~~V~~l~~sp 1056 (1179)
.+. .+..+..+ ..+..+.- ++..+++|+.. ..+.+||+...+.+.+-+.- .-+++++.|-+
T Consensus 134 ~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~ 212 (412)
T KOG3881|consen 134 SGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE 212 (412)
T ss_pred CCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC
Confidence 543 22233222 23333333 45688889998 88999999988655543321 22577889988
Q ss_pred C--CCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCc
Q 001039 1057 S--DRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSK 1132 (1179)
Q Consensus 1057 d--g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~ 1132 (1179)
. ...+++++.-+.+++||.+.+ .+++..+.....++.++ .|+++.+++|..-|.+..||+.++++
T Consensus 213 g~~~~~fat~T~~hqvR~YDt~~q--RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl--------- 281 (412)
T KOG3881|consen 213 GSPNYKFATITRYHQVRLYDTRHQ--RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL--------- 281 (412)
T ss_pred CCCCceEEEEecceeEEEecCccc--CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee---------
Confidence 7 889999999999999999864 46666666666666555 69999999999999999999985532
Q ss_pred cccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1133 MSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1133 ~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
....+.+-.+.|+++..+|.+++||+||-|..|||+|++|.
T Consensus 282 -----~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 282 -----LGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred -----eccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 22236788899999999999999999999999999999984
No 242
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=2.6e-09 Score=120.77 Aligned_cols=308 Identities=10% Similarity=0.140 Sum_probs=205.3
Q ss_pred ceEEEEEccCCCceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecccccc
Q 001039 770 SWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDR 848 (1179)
Q Consensus 770 ~i~~~~fSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s 848 (1179)
+....++|++|+++|.+..+ ++|.+..++. .+.+.. ...++++.|+
T Consensus 36 ~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~-------------------~~lt~~--~~~~~~L~fS------------ 82 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSDNQVVKVFEIATLK-------------------VVLCVE--LKKTYDLLFS------------ 82 (566)
T ss_pred cceeEEEcCCCcEEEEEcCCeEEEEEccCCc-------------------EEEEec--cceeeeeeec------------
Confidence 34556999999999999998 9999988664 111121 1267888888
Q ss_pred CCCCEEEEE-----eC-----CCcEEEEcCCCCCceeEEEecc--ccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEE
Q 001039 849 EDAGFFISG-----ST-----DCLVKIWDPSLRGSELRATLKG--HTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLL 916 (1179)
Q Consensus 849 ~d~~~Lasg-----s~-----Dg~I~lWd~~~~~~~~~~~l~~--h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~ 916 (1179)
|-|.+|.|- .. .-.+++|++.+ ......++. ..+.+..|+.|..+.+- -..+.+.+|+..+.+.+
T Consensus 83 P~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet--~~~~s~~q~k~Q~~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~ 159 (566)
T KOG2315|consen 83 PKGNYLLTWEPWAIYGPKNASNPNVLVYNVET--GVQRSQIQKKMQNGWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTI 159 (566)
T ss_pred ccccccccccccccccCCCCCCCceeeeeecc--ceehhheehhhhcCcccccccchhhhhh-hhcceEEEEecCCccce
Confidence 667776652 11 23477999774 222222222 23345566777654332 23467999998874432
Q ss_pred EEeecCCCcEEEEEEeCC---CEEEE-----EEcCCeEEEEeCCCCeEEEEe---ccCCCcEEEEEEcCCCCEEE-EEe-
Q 001039 917 EELKGHDAQVSCVRMLSG---ERVLT-----ASHDGTVKMWDVRTDTCVATV---GRCSSAVLCMEYDDSTGILA-AGG- 983 (1179)
Q Consensus 917 ~~~~~h~~~V~~l~~s~~---~~l~s-----gs~dg~I~iwd~~~~~~~~~~---~~~~~~v~~l~~sp~~~~l~-sgs- 983 (1179)
.. +-|...|+...++++ ..+++ +|.-+.|++|.......-..+ .-....-..+.|++-|.-|+ .++
T Consensus 160 ~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLast 238 (566)
T KOG2315|consen 160 QH-KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLAST 238 (566)
T ss_pred ee-eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEE
Confidence 22 335778888888855 23332 355677999987632211111 11122334567777665332 222
Q ss_pred -C---------CCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC----EEEEEeCCCcEEEEEccCCeeeEEeecCCcCE
Q 001039 984 -R---------DAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD----TVITGSDDWTARMWSISRGTCDAVLACHAGPV 1049 (1179)
Q Consensus 984 -~---------dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~----~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V 1049 (1179)
- ..++++.++. |.....--...++|.++.|+++ .++.|-.-.++.++|++ +..+..+ ..++-
T Consensus 239 dVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpR 314 (566)
T KOG2315|consen 239 DVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPR 314 (566)
T ss_pred eecCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCc
Confidence 2 3468888887 3333332355789999999765 45666778899999975 5555544 46788
Q ss_pred EEEEEecCCCEEEEEeC---CCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEEC------CCcEEEEeCCC
Q 001039 1050 QCVEYSSSDRGIITGSS---DGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAA------DNSMSLFHRPQ 1120 (1179)
Q Consensus 1050 ~~l~~spdg~~l~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~------Dg~I~iwd~~~ 1120 (1179)
+++-|+|.|++++.++- .|.|-|||+.+ .+++..+......+..++|||.++++++. |+.++||+..+
T Consensus 315 N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n---~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 315 NTAFFNPHGNIILLAGFGNLPGDMEVWDVPN---RKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred cceEECCCCCEEEEeecCCCCCceEEEeccc---hhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 99999999999988774 57899999998 68888888889999999999999999875 78999999864
Q ss_pred C
Q 001039 1121 E 1121 (1179)
Q Consensus 1121 ~ 1121 (1179)
.
T Consensus 392 ~ 392 (566)
T KOG2315|consen 392 S 392 (566)
T ss_pred c
Confidence 4
No 243
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=1.6e-09 Score=125.56 Aligned_cols=370 Identities=12% Similarity=0.103 Sum_probs=233.7
Q ss_pred ceEEEEEccCCCceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecccccc
Q 001039 770 SWVQSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDR 848 (1179)
Q Consensus 770 ~i~~~~fSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s 848 (1179)
+-.++.|+|.| ++|.|+.. |.+-|..+-+ .++.+.-|+..|+.|.|.|..-..+..+-+
T Consensus 17 N~~A~Dw~~~G-LiAygshslV~VVDs~s~q-------------------~iqsie~h~s~V~~VrWap~~~p~~llS~~ 76 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSHSLVSVVDSRSLQ-------------------LIQSIELHQSAVTSVRWAPAPSPRDLLSPS 76 (1062)
T ss_pred cccccccCccc-eEEEecCceEEEEehhhhh-------------------hhhccccCccceeEEEeccCCCchhccCcc
Confidence 34456899999 77777777 9999988776 788899999999999999866544443333
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE----e-cCC-CEEEEEeCCCcEEEEECCCCeEEEEeecC
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI----N-SDR-GKVVSGSDDQSVLVWDKQTSQLLEELKGH 922 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~----s-~d~-~~l~sgs~dg~I~iwd~~t~~~~~~~~~h 922 (1179)
...-.||++...|.|.+||.. ....+..++.|..++..+ . .+. ..|++-....++.+||..+|+........
T Consensus 77 ~~~lliAsaD~~GrIil~d~~--~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys 154 (1062)
T KOG1912|consen 77 SSQLLIASADISGRIILVDFV--LASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS 154 (1062)
T ss_pred ccceeEEeccccCcEEEEEeh--hhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC
Confidence 345577888889999999976 334445567777777643 2 334 45666677789999999999999988877
Q ss_pred CCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCC-------CeEEEEeccCCC------------c-------------EE
Q 001039 923 DAQVSCVRML--SGERVLTASHDGTVKMWDVRT-------DTCVATVGRCSS------------A-------------VL 968 (1179)
Q Consensus 923 ~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~-------~~~~~~~~~~~~------------~-------------v~ 968 (1179)
.....|+.+. +...+..-+..|.+-+-+.-. |+..+.-..|.+ . ..
T Consensus 155 ~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a 234 (1062)
T KOG1912|consen 155 HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCA 234 (1062)
T ss_pred CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHH
Confidence 7777778776 455566556666666655421 222222112111 0 11
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE--cC--CEEEEEeCCCcEEEEEc-----------
Q 001039 969 CMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--DR--DTVITGSDDWTARMWSI----------- 1033 (1179)
Q Consensus 969 ~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~--~~--~~l~sgs~dg~I~iwd~----------- 1033 (1179)
.++|+|.-+-++.......+.++|++-..++....-..+.+.-+.+ ++ +.++++..||.+.+|--
T Consensus 235 ~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~ 314 (1062)
T KOG1912|consen 235 QFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPN 314 (1062)
T ss_pred hhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccc
Confidence 2456665444444445566777777665555554444443333333 22 35666666666666643
Q ss_pred -------------------------------------------------cCCeeeEE-----------------------
Q 001039 1034 -------------------------------------------------SRGTCDAV----------------------- 1041 (1179)
Q Consensus 1034 -------------------------------------------------~~~~~~~~----------------------- 1041 (1179)
.+|+....
T Consensus 315 ~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k 394 (1062)
T KOG1912|consen 315 ASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGK 394 (1062)
T ss_pred hhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhh
Confidence 22110000
Q ss_pred --------eecCCcCEEEEEEec-----------CC-------CEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEE
Q 001039 1042 --------LACHAGPVQCVEYSS-----------SD-------RGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAIL 1095 (1179)
Q Consensus 1042 --------~~~h~~~V~~l~~sp-----------dg-------~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~ 1095 (1179)
..+|....++....| .| ..+|.|...|+|.++|+.+ ....+.+..|++.|.
T Consensus 395 ~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst---~~v~~~fsvht~~Vk 471 (1062)
T KOG1912|consen 395 TSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVST---NAVAASFSVHTSLVK 471 (1062)
T ss_pred ccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecc---hhhhhhhccccccee
Confidence 001222222222221 12 2478899999999999998 345556677888887
Q ss_pred EEecCCC-EEEE----------EECCCcEEEEeCCCCCcCcccCCCCccccceeeee-cCCCcccEEEEEEcCCCCEEEE
Q 001039 1096 SINAGDH-WLGI----------GAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRT-PQKTVAVVRCIASDLERKRICS 1163 (1179)
Q Consensus 1096 sis~dg~-~las----------gs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~-~~~h~~~V~~v~fspdg~~Las 1163 (1179)
++.+.|. .+++ |+.-+.+.+-|+.++.- +..+. ......+|+.+..|..|++|+.
T Consensus 472 gleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGls-------------k~fR~l~~~despI~~irvS~~~~yLai 538 (1062)
T KOG1912|consen 472 GLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLS-------------KRFRGLQKPDESPIRAIRVSSSGRYLAI 538 (1062)
T ss_pred eeeeccceeEEEeeeccccccccceeeeEEEEEcccccc-------------cccccCCCCCcCcceeeeecccCceEEE
Confidence 7765543 2332 22234566777774422 11221 2344578999999999999999
Q ss_pred EeCCCcEEEEECCC
Q 001039 1164 GGRNGLLRLWEATI 1177 (1179)
Q Consensus 1164 gs~Dg~I~vWdv~t 1177 (1179)
.-.|.-+.+||++|
T Consensus 539 ~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 539 LFRREPLEIWDLKT 552 (1062)
T ss_pred EecccchHHHhhcc
Confidence 99999999999965
No 244
>smart00801 dDENN Domain always found downstream of DENN domain, found in a variety of signalling proteins. The dDENN domain is part of the tripartite DENN domain. It is always found downstream of the DENN domain itself, which is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=99.29 E-value=3.9e-12 Score=109.34 Aligned_cols=64 Identities=34% Similarity=0.758 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHHHhhHHhcccc-----cCccccChHHHhcccccCCCCCCchHHHHHHHHhHHHHHHHcc
Q 001039 365 DLQLRFIFLKFLASILGGYRNFIEN-----TGTQVFNAQAFLKKRSRSTNQPPDPMITQFLDSQGFLDYLERG 432 (1179)
Q Consensus 365 ~~~ir~~Fl~~~~~ll~~y~~~l~~-----~~~~~F~~~~Fl~~~~~~~~~~~~~F~~~f~~tq~F~~Fie~~ 432 (1179)
+.+||+||+++|+.+|+||++|+.. .+...||+++|+++++.+ .++|++.|++||||..||++|
T Consensus 1 ~~~Ir~aFl~~f~~l~~~Y~~~l~~~~~~~~~~~~F~~~~Fl~~~~~~----~~~Fl~~~~~TQ~F~~Fi~~r 69 (69)
T smart00801 1 NDEIREAFLRFFVNLFGGYRNFLRELRKEPGPVITFDKESFLKSRPSS----ERPFLSKFLETQMFSQFIEER 69 (69)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceeCHHHHHHhCCch----hhHHHHHHHHHhhHHHHHhcC
Confidence 3589999999999999999999973 356789999999998877 569999999999999999875
No 245
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.28 E-value=2.7e-09 Score=125.71 Aligned_cols=256 Identities=16% Similarity=0.118 Sum_probs=166.7
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE-EecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEE-
Q 001039 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA-INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVS- 927 (1179)
Q Consensus 850 d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~-~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~- 927 (1179)
+++.++.++.||.+..+|.. +.+........ ..+.+ ..-.+..++.++.+|.+..||.++|+.+...........
T Consensus 104 ~~~~v~v~~~~g~l~ald~~--tG~~~W~~~~~-~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAE--DGKELWRAKLS-SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL 180 (377)
T ss_pred cCCEEEEEcCCCEEEEEECC--CCcEeeeeccC-ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee
Confidence 46778888889999999975 33333333221 12221 112456788888899999999999999887764432221
Q ss_pred ----EEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCC----Cc---EEEEEEcC--CCCEEEEEeCCCeEEEEeCC
Q 001039 928 ----CVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCS----SA---VLCMEYDD--STGILAAGGRDAVANIWDIR 994 (1179)
Q Consensus 928 ----~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~----~~---v~~l~~sp--~~~~l~sgs~dg~I~iwD~~ 994 (1179)
+... .++.++.+..+|.+..+|.++|+.+....... .. ...+.-+| .+..+++++.+|.+..||.+
T Consensus 181 ~~~~sp~~-~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~ 259 (377)
T TIGR03300 181 RGSASPVI-ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLR 259 (377)
T ss_pred cCCCCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECC
Confidence 1112 24578888889999999999998776542110 00 00111111 35578888889999999999
Q ss_pred CCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCc-CEEEEEEecCCCEEEEEeCCCcEEEE
Q 001039 995 AGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAG-PVQCVEYSSSDRGIITGSSDGLLRFW 1073 (1179)
Q Consensus 995 ~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~-~V~~l~~spdg~~l~sgs~Dg~I~iw 1073 (1179)
+|+.+..... .........++.+++++.||.+..+|..+|+.+........ ...+... .+..+++++.+|.++++
T Consensus 260 tG~~~W~~~~--~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 260 SGRVLWKRDA--SSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWL 335 (377)
T ss_pred CCcEEEeecc--CCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEE
Confidence 9988766542 22334456778888999999999999999988766532222 2222222 36789999999999999
Q ss_pred EcCCCCcceEEEeecccCceEE-EEecCCCEEEEEECCCcEEEE
Q 001039 1074 ENDDAGGIKCVKNVTIHSSAIL-SINAGDHWLGIGAADNSMSLF 1116 (1179)
Q Consensus 1074 d~~~~~~~~~~~~~~~h~~~i~-sis~dg~~lasgs~Dg~I~iw 1116 (1179)
|..++ +.+.....+...+. +....+..|+.++.||.|+.|
T Consensus 336 d~~tG---~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 336 SREDG---SFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred ECCCC---CEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 99884 34444444433221 112233458888999998875
No 246
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.28 E-value=2.5e-09 Score=119.32 Aligned_cols=314 Identities=9% Similarity=0.075 Sum_probs=206.9
Q ss_pred ccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCC--
Q 001039 826 HAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQ-- 903 (1179)
Q Consensus 826 H~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg-- 903 (1179)
-.-++..++|| |.|.+|++....| |.+|+-. ....+..+......-..++|.+++|.+-+..+
T Consensus 31 ~~~p~~~~~~S------------P~G~~l~~~~~~~-V~~~~g~--~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~ 95 (561)
T COG5354 31 ENWPVAYVSES------------PLGTYLFSEHAAG-VECWGGP--SKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPII 95 (561)
T ss_pred cCcchhheeec------------Ccchheehhhccc-eEEcccc--chhheeeeecCCceecccCcccceeeeeccCCcc
Confidence 44567777777 8999999888765 9999854 22233344433333347899999999865433
Q ss_pred -------------cEEEEECCCCeEEEEeecCCCc--EE-EEEEe-CCCEEEEEEcCCeEEEEeCCCCeEE-EEecc-CC
Q 001039 904 -------------SVLVWDKQTSQLLEELKGHDAQ--VS-CVRML-SGERVLTASHDGTVKMWDVRTDTCV-ATVGR-CS 964 (1179)
Q Consensus 904 -------------~I~iwd~~t~~~~~~~~~h~~~--V~-~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~-~~~~~-~~ 964 (1179)
.+.+||..+|..+..+.+...+ .+ -+.|+ ++.+++-. ....++++++ ++... .-+.. ..
T Consensus 96 ~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~ 173 (561)
T COG5354 96 EPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRP 173 (561)
T ss_pred ChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccc
Confidence 4999999999999999877666 55 67788 55554432 3457899996 33221 11111 13
Q ss_pred CcEEEEEEcCCCC--EEEE-----EeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEc--CCEEEEE-----------eC
Q 001039 965 SAVLCMEYDDSTG--ILAA-----GGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITG-----------SD 1024 (1179)
Q Consensus 965 ~~v~~l~~sp~~~--~l~s-----gs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~--~~~l~sg-----------s~ 1024 (1179)
..+...+++|.++ .|+. ++..+.+++|.+..+..+.+-.-....-..+.|+ ++++++- -.
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence 5688888998643 3333 3567889999998776654432222223345553 3322211 12
Q ss_pred CCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEe--CCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCC
Q 001039 1025 DWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS--SDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDH 1102 (1179)
Q Consensus 1025 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~ 1102 (1179)
...++++++....+.... ...++|...+|.|+++.+++.+ .+..+.++|++. .....+.........++|.++
T Consensus 254 esnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~----Nl~~~~Pe~~rNT~~fsp~~r 328 (561)
T COG5354 254 ESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG----NLRFYFPEQKRNTIFFSPHER 328 (561)
T ss_pred cceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeeccccc----ceEEecCCcccccccccCccc
Confidence 356888888754443333 5689999999999998876654 788899999987 344444444445566789999
Q ss_pred EEEEEECC---CcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEe------CCCcEEEE
Q 001039 1103 WLGIGAAD---NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGG------RNGLLRLW 1173 (1179)
Q Consensus 1103 ~lasgs~D---g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs------~Dg~I~vW 1173 (1179)
+++.++-| |.+-+||..++. .+.....+.. .+-+.|+|||+++.+.. .|..|+||
T Consensus 329 ~il~agF~nl~gni~i~~~~~rf--------------~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~ 392 (561)
T COG5354 329 YILFAGFDNLQGNIEIFDPAGRF--------------KVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLW 392 (561)
T ss_pred EEEEecCCccccceEEeccCCce--------------EEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEE
Confidence 99987765 789999987432 2332333322 34567999999987763 48889999
Q ss_pred ECCC
Q 001039 1174 EATI 1177 (1179)
Q Consensus 1174 dv~t 1177 (1179)
|+..
T Consensus 393 ~v~g 396 (561)
T COG5354 393 DVYG 396 (561)
T ss_pred EecC
Confidence 9864
No 247
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.1e-09 Score=122.74 Aligned_cols=310 Identities=9% Similarity=0.097 Sum_probs=203.1
Q ss_pred cCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccc-cEEEEecCCCEEEEEeC-----------CCcEEEEECCCCeE
Q 001039 848 REDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTR-TVRAINSDRGKVVSGSD-----------DQSVLVWDKQTSQL 915 (1179)
Q Consensus 848 s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~-~v~~~s~d~~~l~sgs~-----------dg~I~iwd~~t~~~ 915 (1179)
||.|.||+|--..| |.+|-= ......+.+. |.+ .-..+||..++|++-+. ...++|||+.+|..
T Consensus 219 SP~GTYL~t~Hk~G-I~lWGG--~~f~r~~RF~-Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~l 294 (698)
T KOG2314|consen 219 SPKGTYLVTFHKQG-IALWGG--ESFDRIQRFY-HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLL 294 (698)
T ss_pred cCCceEEEEEeccc-eeeecC--ccHHHHHhcc-CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccch
Confidence 38999999998877 899972 2333334443 443 33478999999998653 25799999999999
Q ss_pred EEEeec--CCCcEE-EEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC-----CC
Q 001039 916 LEELKG--HDAQVS-CVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGR-----DA 986 (1179)
Q Consensus 916 ~~~~~~--h~~~V~-~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~-----dg 986 (1179)
.+.+.. ....++ -..|+ ++.+++.-.. ..|.||+..+...+..-.-.-..|....|+|.++.||-=+. -.
T Consensus 295 krsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~pa 373 (698)
T KOG2314|consen 295 KRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPA 373 (698)
T ss_pred hcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcc
Confidence 888875 233333 34788 6666665444 67999998765444332234567889999999888775332 13
Q ss_pred eEEEEeCCCCceeEEeecCCCCeEEEEE--cCCEEEEEe----------CCCcEEEEEccCCeeeEEeecCCcCEEEEEE
Q 001039 987 VANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGS----------DDWTARMWSISRGTCDAVLACHAGPVQCVEY 1054 (1179)
Q Consensus 987 ~I~iwD~~~~~~~~~~~~~~~~I~sl~~--~~~~l~sgs----------~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 1054 (1179)
.+.+..+.+++.+++-.-+.-.=..+.| +|++|+.-- .-..+.|+.++..........-...|...+|
T Consensus 374 rvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaW 453 (698)
T KOG2314|consen 374 RVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAW 453 (698)
T ss_pred eEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeee
Confidence 5666677776666654444333334555 456555421 1123556666554433333335678899999
Q ss_pred ecCCCEEEEEeC---CCcEEEEEcC-CCCcceEEEeecccCceEEEEecCCCEEEEEE---CCCcEEEEeCCCCCcCccc
Q 001039 1055 SSSDRGIITGSS---DGLLRFWEND-DAGGIKCVKNVTIHSSAILSINAGDHWLGIGA---ADNSMSLFHRPQERLGGFS 1127 (1179)
Q Consensus 1055 spdg~~l~sgs~---Dg~I~iwd~~-~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs---~Dg~I~iwd~~~~~~~~~~ 1127 (1179)
-|.|+.+++-+. ..++.+|.++ +......++.+......-..++|.|++++++. ..|.+..+|+.-.
T Consensus 454 EP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a------ 527 (698)
T KOG2314|consen 454 EPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA------ 527 (698)
T ss_pred ccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchh------
Confidence 999998877653 4578899888 44556666666665666677899999998764 5689999998631
Q ss_pred CCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeC------CCcEEEEECCC
Q 001039 1128 GTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGR------NGLLRLWEATI 1177 (1179)
Q Consensus 1128 ~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~------Dg~I~vWdv~t 1177 (1179)
.+...-.......+.+.|.|.|+++++++. |.--++|+++.
T Consensus 528 ---------~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 528 ---------DLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred ---------hhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 111111112234578899999999999975 44567777653
No 248
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=9.5e-10 Score=131.65 Aligned_cols=231 Identities=10% Similarity=0.029 Sum_probs=150.0
Q ss_pred CcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEc---CCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCE
Q 001039 903 QSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASH---DGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI 978 (1179)
Q Consensus 903 g~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~---dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 978 (1179)
.+|.+||... ...+.+..+...+.+..|+ +++.++.++. +..|.+||+.+++.... ....+...+.+|+|+|+.
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCCCCE
Confidence 3689999864 4445566677788999999 6778887764 34699999988875433 333445567899999997
Q ss_pred EEE-EeCCC--eEEEEeCCCCceeEEeecCCCCeEEEEEc--CCEEEEEe-CCCc--EEEEEccCCeeeEEeecCCcCEE
Q 001039 979 LAA-GGRDA--VANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGS-DDWT--ARMWSISRGTCDAVLACHAGPVQ 1050 (1179)
Q Consensus 979 l~s-gs~dg--~I~iwD~~~~~~~~~~~~~~~~I~sl~~~--~~~l~sgs-~dg~--I~iwd~~~~~~~~~~~~h~~~V~ 1050 (1179)
++. .+.+| .|++||+.+++. ..+..+.......+|+ ++.++.++ .+|. |+++|+.+++... +..+.....
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~ 339 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA 339 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence 764 44455 699999988764 3444555455567775 45666655 3444 6667776665433 222334455
Q ss_pred EEEEecCCCEEEEEeCCC---cEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECC---CcEEEEeCCCCCcC
Q 001039 1051 CVEYSSSDRGIITGSSDG---LLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAAD---NSMSLFHRPQERLG 1124 (1179)
Q Consensus 1051 ~l~~spdg~~l~sgs~Dg---~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~D---g~I~iwd~~~~~~~ 1124 (1179)
..+|+|||++++..+.++ .|.+||+.++. ...+. .+....-.++++||++++..+.+ +.|.++++.+.
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~-~~~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~--- 413 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS-VRTLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR--- 413 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCC-eEECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC---
Confidence 789999999998766443 58999987743 22222 12122234779999988877653 45777777422
Q ss_pred cccCCCCccccceeeeecCCCcccEEEEEEcC
Q 001039 1125 GFSGTGSKMSGWQLYRTPQKTVAVVRCIASDL 1156 (1179)
Q Consensus 1125 ~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fsp 1156 (1179)
....+..+.+.+...+|+|
T Consensus 414 -------------~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 414 -------------VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -------------ceEEcccCCCCCCCCccCC
Confidence 1222333455667778876
No 249
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.1e-09 Score=130.68 Aligned_cols=229 Identities=13% Similarity=0.084 Sum_probs=154.0
Q ss_pred eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeC---CCcEEEE
Q 001039 790 VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGST---DCLVKIW 866 (1179)
Q Consensus 790 I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~---Dg~I~lW 866 (1179)
|.+||.++.. .+.+..+.+.+.+.+|| |||+.|+..+. +..|.+|
T Consensus 181 l~~~d~dg~~--------------------~~~lt~~~~~~~~p~wS------------PDG~~la~~s~~~g~~~i~i~ 228 (429)
T PRK03629 181 LRVSDYDGYN--------------------QFVVHRSPQPLMSPAWS------------PDGSKLAYVTFESGRSALVIQ 228 (429)
T ss_pred EEEEcCCCCC--------------------CEEeecCCCceeeeEEc------------CCCCEEEEEEecCCCcEEEEE
Confidence 8888887554 24455677789999998 89999986542 4579999
Q ss_pred cCCCCCceeEEEeccccccEEEEecCCCEEEEE-eCCC--cEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEc
Q 001039 867 DPSLRGSELRATLKGHTRTVRAINSDRGKVVSG-SDDQ--SVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASH 942 (1179)
Q Consensus 867 d~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sg-s~dg--~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~ 942 (1179)
++.......+..+.++... ..++|||+.|+.. +.+| .|.+||+.+++.... ..+...+....|+ +++.++.++.
T Consensus 229 dl~~G~~~~l~~~~~~~~~-~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~ 306 (429)
T PRK03629 229 TLANGAVRQVASFPRHNGA-PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSD 306 (429)
T ss_pred ECCCCCeEEccCCCCCcCC-eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeC
Confidence 9864333333344454433 4689999988865 4444 589999998876544 3344567788999 6777776665
Q ss_pred C-C--eEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeEEeecCCCCeEEEEE--
Q 001039 943 D-G--TVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD---AVANIWDIRAGRQMHKFLGHTKWIRSIRM-- 1014 (1179)
Q Consensus 943 d-g--~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~d---g~I~iwD~~~~~~~~~~~~~~~~I~sl~~-- 1014 (1179)
+ | .|.++|+.+++.. .+...........|+|+|++++..+.+ ..|.+||+.+++.. .+... .......|
T Consensus 307 ~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~Sp 383 (429)
T PRK03629 307 QAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAP 383 (429)
T ss_pred CCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECC
Confidence 4 4 4555577766543 333334455678999999999876643 36889999887643 33221 12233445
Q ss_pred cCCEEEEEeCCCc---EEEEEccCCeeeEEeecCCcCEEEEEEec
Q 001039 1015 DRDTVITGSDDWT---ARMWSISRGTCDAVLACHAGPVQCVEYSS 1056 (1179)
Q Consensus 1015 ~~~~l~sgs~dg~---I~iwd~~~~~~~~~~~~h~~~V~~l~~sp 1056 (1179)
++..++.++.++. +.++++ +|.....+.+|.+.+...+|+|
T Consensus 384 DG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 384 NGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 5667888877764 677776 4666677777888898899987
No 250
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.26 E-value=2.2e-10 Score=137.68 Aligned_cols=223 Identities=15% Similarity=0.250 Sum_probs=169.7
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEE--E
Q 001039 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVS--C 928 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~--~ 928 (1179)
+.++++|..-+.+..=+.+ .+....+..+... ..+..+...++.++.+..+.+||...+.....+........ +
T Consensus 61 ~~~~v~~~~~~~v~~~~~~---~~~~~~~s~wi~g-~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~ 136 (967)
T KOG0974|consen 61 SGKIVTCAKSDEVYVKEAS---NQIIERFSDWIFG-AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSS 136 (967)
T ss_pred cceEEEEEeecceeecchh---hhhhhhccccccc-cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeE
Confidence 4566666665555443322 1111222222211 24567888999999999999999988877766654332221 1
Q ss_pred EEE--e-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE-Eeec
Q 001039 929 VRM--L-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMH-KFLG 1004 (1179)
Q Consensus 929 l~~--s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~-~~~~ 1004 (1179)
+-+ + +.-++++|+.-+.|.+|+....+.-..+.+|.+.|.++.++-||+++++.+.|..+++|++.+.+... ..-+
T Consensus 137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg 216 (967)
T KOG0974|consen 137 LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG 216 (967)
T ss_pred EEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc
Confidence 111 1 34468899999999999987444444577999999999999999999999999999999999988776 6679
Q ss_pred CCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCC-cCEEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 001039 1005 HTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHA-GPVQCVEYSSSDRGIITGSSDGLLRFWENDDA 1078 (1179)
Q Consensus 1005 ~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~ 1078 (1179)
|..+++.+.+.++.+++++.|.+.++|+.+ ++.+..+..|. ..|+.++..++....+|++.||.+++||....
T Consensus 217 HsaRvw~~~~~~n~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 217 HSARVWACCFLPNRIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ccceeEEEEeccceeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 999999999999999999999999999754 55555777775 46999999999999999999999999998763
No 251
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=2.3e-09 Score=127.77 Aligned_cols=230 Identities=10% Similarity=0.032 Sum_probs=152.8
Q ss_pred cEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEE---cCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEE
Q 001039 904 SVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTAS---HDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGIL 979 (1179)
Q Consensus 904 ~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 979 (1179)
.|.+||.+.... +.+..+...+....|+ +|+.++..+ .+..+.+||+.+++..... ...+.+...+|+|||+.|
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEE
Confidence 789999875543 3444566789999999 677777554 2457999999888644322 233345578999999988
Q ss_pred EEE-eCCC--eEEEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEEEeCC-Cc--EEEEEccCCeeeEEeecCCcCEEE
Q 001039 980 AAG-GRDA--VANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGSDD-WT--ARMWSISRGTCDAVLACHAGPVQC 1051 (1179)
Q Consensus 980 ~sg-s~dg--~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs~d-g~--I~iwd~~~~~~~~~~~~h~~~V~~ 1051 (1179)
+.. +.+| .|++||+.+++... +..+...+....|++ +.++..+.+ |. |.++|+.+++.. .+..+......
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~ 335 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD 335 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccC
Confidence 865 3344 59999998876543 334445667778854 467666543 44 455566666543 33334445667
Q ss_pred EEEecCCCEEEEEeCC---CcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCc---EEEEeCCCCCcCc
Q 001039 1052 VEYSSSDRGIITGSSD---GLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNS---MSLFHRPQERLGG 1125 (1179)
Q Consensus 1052 l~~spdg~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~---I~iwd~~~~~~~~ 1125 (1179)
..|+|||++++..+.+ ..|.+||+.++. ...+.. .....-.+++|||++|+.++.++. +.++++.+
T Consensus 336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-~~~Lt~--~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G----- 407 (429)
T PRK03629 336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQVLTD--TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG----- 407 (429)
T ss_pred EEECCCCCEEEEEEccCCCceEEEEECCCCC-eEEeCC--CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC-----
Confidence 8999999999876643 358889988743 333321 222233567899999999988765 66677642
Q ss_pred ccCCCCccccceeeeecCCCcccEEEEEEcC
Q 001039 1126 FSGTGSKMSGWQLYRTPQKTVAVVRCIASDL 1156 (1179)
Q Consensus 1126 ~~~~g~~~~~~~~~~~~~~h~~~V~~v~fsp 1156 (1179)
.....+.+|.+.+...+|+|
T Consensus 408 -----------~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 408 -----------RFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred -----------CCeEECccCCCCcCCcccCC
Confidence 22334556778888899987
No 252
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=1.5e-09 Score=130.77 Aligned_cols=147 Identities=26% Similarity=0.460 Sum_probs=126.0
Q ss_pred ccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeEEE-Eeec
Q 001039 845 VGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQLLE-ELKG 921 (1179)
Q Consensus 845 ~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~~~-~~~~ 921 (1179)
.+++++.-++++|+.-|.|.+|+... .... ..+.||.+.+.++ +.||.++++.+.|.++++|++++.+... +.-+
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~-dn~p-~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg 216 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHE-DNKP-IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG 216 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccc-cCCc-ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc
Confidence 35568888999999999999999872 2222 2689999999976 6699999999999999999999998877 6778
Q ss_pred CCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 001039 922 HDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRC-SSAVLCMEYDDSTGILAAGGRDAVANIWDIRA 995 (1179)
Q Consensus 922 h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~ 995 (1179)
|...|+.+.+.+. .+++++.|-+.++|+.+ ++.+..+..| ...+..++..++....++++.||.+++||...
T Consensus 217 HsaRvw~~~~~~n-~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 217 HSARVWACCFLPN-RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccceeEEEEeccc-eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9999999999977 99999999999999754 5555567666 46799999999999999999999999999864
No 253
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=2.7e-09 Score=127.75 Aligned_cols=219 Identities=15% Similarity=0.094 Sum_probs=141.6
Q ss_pred eEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCC---CcEEEEcCCCCCceeEEEeccccccEEEEecCCCEE
Q 001039 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTD---CLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKV 896 (1179)
Q Consensus 820 ~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~D---g~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l 896 (1179)
.+.+..|...+.+.+|+ |||+.|+.++.+ ..|++||+.......+....++. ....++|||+.+
T Consensus 196 ~~~lt~~~~~v~~p~wS------------pDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~-~~~~~SpDG~~l 262 (433)
T PRK04922 196 PQTILRSAEPILSPAWS------------PDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGIN-GAPSFSPDGRRL 262 (433)
T ss_pred ceEeecCCCccccccCC------------CCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCc-cCceECCCCCEE
Confidence 34566677788888887 899999988743 46999998633332222233222 123689999987
Q ss_pred E-EEeCCC--cEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEc-CCe--EEEEeCCCCeEEEEeccCCCcEEE
Q 001039 897 V-SGSDDQ--SVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASH-DGT--VKMWDVRTDTCVATVGRCSSAVLC 969 (1179)
Q Consensus 897 ~-sgs~dg--~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~-dg~--I~iwd~~~~~~~~~~~~~~~~v~~ 969 (1179)
+ +.+.+| .|++||+.+++.. .+..+.......+|+ +++.++.++. +|. |.++|+.+++..... ........
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~~ 340 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNAR 340 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCCCccC
Confidence 6 445555 5999999988754 455555555678898 6777776664 444 677777776643322 22334457
Q ss_pred EEEcCCCCEEEEEeCCC---eEEEEeCCCCceeEEeecCCCCeEEEEEc--CCEEEEEeCC---CcEEEEEccCCeeeEE
Q 001039 970 MEYDDSTGILAAGGRDA---VANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSDD---WTARMWSISRGTCDAV 1041 (1179)
Q Consensus 970 l~~sp~~~~l~sgs~dg---~I~iwD~~~~~~~~~~~~~~~~I~sl~~~--~~~l~sgs~d---g~I~iwd~~~~~~~~~ 1041 (1179)
.+|+|+|+.++..+.++ .|.+||+.+++.. .+. +........|+ ++.++..+.+ +.|.+++.. +.....
T Consensus 341 ~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~ 417 (433)
T PRK04922 341 ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQR 417 (433)
T ss_pred EEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEE
Confidence 89999999998765443 6999999887654 332 22233445664 5566555542 457788875 444555
Q ss_pred eecCCcCEEEEEEec
Q 001039 1042 LACHAGPVQCVEYSS 1056 (1179)
Q Consensus 1042 ~~~h~~~V~~l~~sp 1056 (1179)
+..+.+.+...+|+|
T Consensus 418 l~~~~g~~~~p~wsp 432 (433)
T PRK04922 418 LVSADGEVREPAWSP 432 (433)
T ss_pred cccCCCCCCCCccCC
Confidence 555666777777876
No 254
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=1.3e-09 Score=130.02 Aligned_cols=217 Identities=13% Similarity=0.084 Sum_probs=139.6
Q ss_pred ccccCCcceEEEEEccCCCceeeccCc-----eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeec
Q 001039 763 EASGIGRSWVQSMFSREASSRSHSFSR-----VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVT 837 (1179)
Q Consensus 763 ~~~gh~~~i~~~~fSpdg~~las~~~d-----I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~ 837 (1179)
....+...+...+|||||+.++..+.+ |.+||+.+++ . ..+....+.+.+.+|+
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-------------------~-~~l~~~~g~~~~~~~S- 248 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR-------------------R-RVVANFKGSNSAPAWS- 248 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC-------------------E-EEeecCCCCccceEEC-
Confidence 344566777888999999998876532 9999998775 1 2233344555677777
Q ss_pred ccceeccccccCCCCEEE-EEeCCCcEEEEcCCCCCceeEEEeccccccE--EEEecCCCEEEEEeC-CCcEEEEEC--C
Q 001039 838 KREVWDLVGDREDAGFFI-SGSTDCLVKIWDPSLRGSELRATLKGHTRTV--RAINSDRGKVVSGSD-DQSVLVWDK--Q 911 (1179)
Q Consensus 838 ~~~~~~~~~~s~d~~~La-sgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v--~~~s~d~~~l~sgs~-dg~I~iwd~--~ 911 (1179)
|||+.|+ +.+.+|...||.++..+... ..+..+.... .++++||+.++..+. +|...+|.+ .
T Consensus 249 -----------PDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~ 316 (427)
T PRK02889 249 -----------PDGRTLAVALSRDGNSQIYTVNADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS 316 (427)
T ss_pred -----------CCCCEEEEEEccCCCceEEEEECCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC
Confidence 8998886 56778887777654333333 3444443322 368999999887654 456666654 4
Q ss_pred CCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCC---eEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC-
Q 001039 912 TSQLLEELKGHDAQVSCVRML-SGERVLTASHDG---TVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDA- 986 (1179)
Q Consensus 912 t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg- 986 (1179)
+++... +..+........|+ +|+.++..+.++ .|.+||+.+++....... .......|+|+|+.++.++.++
T Consensus 317 ~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~g 393 (427)
T PRK02889 317 GGAAQR-VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQGG 393 (427)
T ss_pred CCceEE-EecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecCC
Confidence 554322 22223334456788 688888766554 699999988875433222 2346789999999988877544
Q ss_pred --eEEEEeCCCCceeEEeecCCCCeEEEEEcC
Q 001039 987 --VANIWDIRAGRQMHKFLGHTKWIRSIRMDR 1016 (1179)
Q Consensus 987 --~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~ 1016 (1179)
.+.+.+. ++.....+..+.+.+...+|++
T Consensus 394 ~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 394 RSVLAAVSS-DGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred CEEEEEEEC-CCCceEEeecCCCCCCCCccCC
Confidence 3566666 4555555555556566666654
No 255
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=2.4e-09 Score=114.50 Aligned_cols=236 Identities=17% Similarity=0.245 Sum_probs=152.1
Q ss_pred CCcEEEEEEeC-CCEEEEEEcCCeEEEEeCCCCeEEEEec-cCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCC---
Q 001039 923 DAQVSCVRMLS-GERVLTASHDGTVKMWDVRTDTCVATVG-RCSSAVLCMEYDDS-TGILAAGGRDAVANIWDIRAG--- 996 (1179)
Q Consensus 923 ~~~V~~l~~s~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~~~~v~~l~~sp~-~~~l~sgs~dg~I~iwD~~~~--- 996 (1179)
+..+..++|+. -..++++..|..|++||-.. ++...++ .....|+|++|-|. +..+++|+. +.|.+|.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence 34567788884 44578899999999999776 4444443 34568999999994 456777765 56889976421
Q ss_pred -ce----------eEEeecCCCCeEEEEEcC--CEEEEEe-CCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEE
Q 001039 997 -RQ----------MHKFLGHTKWIRSIRMDR--DTVITGS-DDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGII 1062 (1179)
Q Consensus 997 -~~----------~~~~~~~~~~I~sl~~~~--~~l~sgs-~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 1062 (1179)
.. +.+..+| ..|+++.|++ ..+++++ .|..|.|||.+++..+......-+.++-+.|||||.++.
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 11 1122344 6899999954 4777776 567899999999987766655677899999999999999
Q ss_pred EEeCCCcEEEEEcCCCCcceEEEeecccCceE--EEEecCCCEEEEEECCCcEEEEeCC--CCCcCcccCCCCcccccee
Q 001039 1063 TGSSDGLLRFWENDDAGGIKCVKNVTIHSSAI--LSINAGDHWLGIGAADNSMSLFHRP--QERLGGFSGTGSKMSGWQL 1138 (1179)
Q Consensus 1063 sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i--~sis~dg~~lasgs~Dg~I~iwd~~--~~~~~~~~~~g~~~~~~~~ 1138 (1179)
+++-|+..++|..... ..+.+-..+.. .| -+++|+|++|...+. |.=++|.+. ++... +...+.. ..-.+
T Consensus 255 aAt~davfrlw~e~q~--wt~erw~lgsg-rvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~-~~~~~~~-k~~ll 328 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQS--WTKERWILGSG-RVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSV-FLRPQSI-KRVLL 328 (445)
T ss_pred Eecccceeeeehhccc--ceecceeccCC-ceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCcc-ccCcccc-eeeee
Confidence 9999999999955431 22222222222 44 345899987765543 333444443 22111 1101100 00011
Q ss_pred eeec---------CCCcccEEEEEEcCCCCEEEEEeCC
Q 001039 1139 YRTP---------QKTVAVVRCIASDLERKRICSGGRN 1167 (1179)
Q Consensus 1139 ~~~~---------~~h~~~V~~v~fspdg~~Lasgs~D 1167 (1179)
+..+ .--.+.+.+++|.|.|.+||+.-..
T Consensus 329 iaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 329 IADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred eccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 1111 1124678999999999999987443
No 256
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=6.7e-09 Score=124.51 Aligned_cols=213 Identities=12% Similarity=0.033 Sum_probs=141.3
Q ss_pred CeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCceeEEeecCCCCeEEEEEcC--CE
Q 001039 944 GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGR---DAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DT 1018 (1179)
Q Consensus 944 g~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~---dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~ 1018 (1179)
..|.+||.... ..+.+..+...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+.+|++ +.
T Consensus 182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 47889997544 44555577788999999999999888763 468999999888653 3445555666777754 45
Q ss_pred E-EEEeCCCc--EEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeC-CC--cEEEEEcCCCCcceEEEeecccCc
Q 001039 1019 V-ITGSDDWT--ARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSS-DG--LLRFWENDDAGGIKCVKNVTIHSS 1092 (1179)
Q Consensus 1019 l-~sgs~dg~--I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~-Dg--~I~iwd~~~~~~~~~~~~~~~h~~ 1092 (1179)
+ ++.+.+|. |++||+.+++. ..+..+.+......|+|||+.++..+. +| .|++||+.++. .+.+....+ ..
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~-~~~lt~~~~-~~ 336 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN-PRRISFGGG-RY 336 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-eEEeecCCC-cc
Confidence 4 45565655 77789887765 445556666778999999999887764 33 57788876532 333322111 12
Q ss_pred eEEEEecCCCEEEEEECC---CcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCC--
Q 001039 1093 AILSINAGDHWLGIGAAD---NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRN-- 1167 (1179)
Q Consensus 1093 ~i~sis~dg~~lasgs~D---g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~D-- 1167 (1179)
....++|||+.|+..+.+ ..|.+||+.++.. ..+. +...+....|+|||+.|+..+.+
T Consensus 337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-------------~~lt----~~~~~~~p~~spDG~~i~~~~~~~~ 399 (435)
T PRK05137 337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-------------RILT----SGFLVEGPTWAPNGRVIMFFRQTPG 399 (435)
T ss_pred cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-------------Eecc----CCCCCCCCeECCCCCEEEEEEccCC
Confidence 224679999999887643 3578888753210 1111 11236678999999998776543
Q ss_pred ----CcEEEEECCCC
Q 001039 1168 ----GLLRLWEATIN 1178 (1179)
Q Consensus 1168 ----g~I~vWdv~tg 1178 (1179)
..+.+.+++++
T Consensus 400 ~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 400 SGGAPKLYTVDLTGR 414 (435)
T ss_pred CCCcceEEEEECCCC
Confidence 24777777654
No 257
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.17 E-value=8.7e-08 Score=105.84 Aligned_cols=252 Identities=12% Similarity=0.107 Sum_probs=154.6
Q ss_pred CCCcEEEEEEe-CCCEEEEEEcCC-eEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 001039 922 HDAQVSCVRML-SGERVLTASHDG-TVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM 999 (1179)
Q Consensus 922 h~~~V~~l~~s-~~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~ 999 (1179)
+.+.|.-..+. +++-++.|..|| .+-++|.++++..+ +...-+.|.++..+++|+.++++.....+.++|+.+|+..
T Consensus 358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~ 436 (668)
T COG4946 358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR 436 (668)
T ss_pred CCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee
Confidence 33444444444 555788888888 89999988887544 4456678999999999999999999999999999999877
Q ss_pred EEeecCCCCeEEEEEcCC--EEEEEeCCC----cEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeC-------
Q 001039 1000 HKFLGHTKWIRSIRMDRD--TVITGSDDW----TARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSS------- 1066 (1179)
Q Consensus 1000 ~~~~~~~~~I~sl~~~~~--~l~sgs~dg----~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~------- 1066 (1179)
..-+...+-|+.+.|+++ ++|-+--+| .|+++|+.+++...... ..+.=.+-+|.||+++|.--+.
T Consensus 437 ~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~RsLdPs~ 515 (668)
T COG4946 437 LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSARSLDPSN 515 (668)
T ss_pred EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEeccccCCCC
Confidence 666677788999999765 777666555 68999999887655433 2333345688999998875542
Q ss_pred CCcEEEEEcCCCCcceEEEeecccC--------------ceE-----------EEEecCCCEEEEEECCCcEEEEeCCCC
Q 001039 1067 DGLLRFWENDDAGGIKCVKNVTIHS--------------SAI-----------LSINAGDHWLGIGAADNSMSLFHRPQE 1121 (1179)
Q Consensus 1067 Dg~I~iwd~~~~~~~~~~~~~~~h~--------------~~i-----------~sis~dg~~lasgs~Dg~I~iwd~~~~ 1121 (1179)
|..+.=+....-...-.+.-.++.. ..+ .-+.+..-.-+++-.+|.|.++..+-.
T Consensus 516 Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY~sI~~lk~~killfs~pi~ 595 (668)
T COG4946 516 DRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLFSYPIH 595 (668)
T ss_pred CeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCccceeEeeecCCCeEEEEEeecc
Confidence 3322222211100000000000100 000 000112223455666777877776521
Q ss_pred -CcCcccCCCCcc----ccceeee-ecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001039 1122 -RLGGFSGTGSKM----SGWQLYR-TPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1122 -~~~~~~~~g~~~----~~~~~~~-~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
.....-. |... ..+.+.. ....-...++++..|+||+.+.. -.||.+++++++.
T Consensus 596 Gefs~yy~-gq~~kG~l~~ydletkk~~e~k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 596 GEFSQYYW-GQPEKGRLEKYDLETKKVEEYKDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred chhhhhhc-CCCccceEEEEecchhhHHHHhcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 1111100 1110 0111100 11122356899999999999888 7899999999864
No 258
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=3e-09 Score=126.99 Aligned_cols=232 Identities=10% Similarity=0.067 Sum_probs=145.5
Q ss_pred CcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcC---CeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCE
Q 001039 903 QSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHD---GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI 978 (1179)
Q Consensus 903 g~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 978 (1179)
..|.+||.. |.....+..+...+.+.+|+ +++.++..+.+ ..|.+||+.+++.... ....+.+.+.+|+|||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 467777764 44445555677889999999 67788776643 4599999998876443 333455678999999998
Q ss_pred EEE-EeCCCeEEEE--eCCCCceeEEeecCCCCeEEEEEc--CCEEEEEe-CCCcEEEEEc--cCCeeeEEeecCCcCEE
Q 001039 979 LAA-GGRDAVANIW--DIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGS-DDWTARMWSI--SRGTCDAVLACHAGPVQ 1050 (1179)
Q Consensus 979 l~s-gs~dg~I~iw--D~~~~~~~~~~~~~~~~I~sl~~~--~~~l~sgs-~dg~I~iwd~--~~~~~~~~~~~h~~~V~ 1050 (1179)
++. .+.+|...+| |..++. ...+..+........|+ ++.++..+ .+|...+|.+ .+++.. .+..+.....
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~ 331 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNT 331 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcC
Confidence 874 5667765555 554443 45555555555666775 45666554 3466666654 444432 2222233345
Q ss_pred EEEEecCCCEEEEEeCCC---cEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCC-c--EEEEeCCCCCcC
Q 001039 1051 CVEYSSSDRGIITGSSDG---LLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADN-S--MSLFHRPQERLG 1124 (1179)
Q Consensus 1051 ~l~~spdg~~l~sgs~Dg---~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg-~--I~iwd~~~~~~~ 1124 (1179)
..+|+|||++++..+.++ .|.+||+.++. .+.+. ......-.+++|||+.|+.++.++ . +.+.++.
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~-~~~lt--~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~----- 403 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQ-VTALT--DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD----- 403 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCC-eEEcc--CCCCccCceECCCCCEEEEEEecCCCEEEEEEECC-----
Confidence 678999999999877654 59999998743 22222 122233457899999988877554 2 3444442
Q ss_pred cccCCCCccccceeeeecCCCcccEEEEEEcCC
Q 001039 1125 GFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLE 1157 (1179)
Q Consensus 1125 ~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspd 1157 (1179)
| .....+..+.+.+...+|+|-
T Consensus 404 -----g------~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 404 -----G------RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred -----C------CceEEeecCCCCCCCCccCCC
Confidence 2 122233345566777888873
No 259
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.14 E-value=8.3e-09 Score=107.92 Aligned_cols=264 Identities=14% Similarity=0.116 Sum_probs=177.8
Q ss_pred CCCcEEEEECCCCeEEE--E-eecCCCcEEEEEEe----CCC-EEEEEEcCCeEEEEeCCCCeEEEEeccCC------Cc
Q 001039 901 DDQSVLVWDKQTSQLLE--E-LKGHDAQVSCVRML----SGE-RVLTASHDGTVKMWDVRTDTCVATVGRCS------SA 966 (1179)
Q Consensus 901 ~dg~I~iwd~~t~~~~~--~-~~~h~~~V~~l~~s----~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~~------~~ 966 (1179)
..|.+.++++...+... + .......+..+.|. +++ .++-+-.+|.|.++..........+.+-. ..
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 34778888887655433 1 12234456667775 455 46667788999999876555444443321 12
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--EEeecCCCCeEEEEE---cCCEEEEEeCCCcEEEEEcc-CCeeeE
Q 001039 967 VLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM--HKFLGHTKWIRSIRM---DRDTVITGSDDWTARMWSIS-RGTCDA 1040 (1179)
Q Consensus 967 v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~--~~~~~~~~~I~sl~~---~~~~l~sgs~dg~I~iwd~~-~~~~~~ 1040 (1179)
..++.|++.+..++++..+|.+.+.+....... +.++.|.-.++...| +++.+.+|+.|+.+..||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 467889999999999999999997776655443 478899998888888 57899999999999999999 444444
Q ss_pred E-eecCCcCEEEEEEec-CCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ec--CCCEEEEEECCCcEE
Q 001039 1041 V-LACHAGPVQCVEYSS-SDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NA--GDHWLGIGAADNSMS 1114 (1179)
Q Consensus 1041 ~-~~~h~~~V~~l~~sp-dg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~--dg~~lasgs~Dg~I~ 1114 (1179)
. .+.|...|.++.-+| .+.++++|+.|..|++||.++-+ +.+..- .-.+.|+.+ +| .+.+++++ .-+-.+
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~--kPl~~~-~v~GGVWRi~~~p~~~~~lL~~C-Mh~G~k 279 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG--KPLFKA-KVGGGVWRIKHHPEIFHRLLAAC-MHNGAK 279 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc--CccccC-ccccceEEEEecchhhhHHHHHH-HhcCce
Confidence 4 456889999998776 57899999999999999998633 222221 123556665 33 23334433 334466
Q ss_pred EEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEe-CCCcEE-EEECCCC
Q 001039 1115 LFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGG-RNGLLR-LWEATIN 1178 (1179)
Q Consensus 1115 iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs-~Dg~I~-vWdv~tg 1178 (1179)
|-+.+.... + ..........|.+-...-.|......||||+ .|+.++ +|-.-||
T Consensus 280 i~~~~~~~~-------e---~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 280 ILDSSDKVL-------E---FQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EEEeccccc-------c---hheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 666653211 0 1123445567877777777865556799875 688766 9977665
No 260
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.13 E-value=2.8e-07 Score=106.88 Aligned_cols=269 Identities=14% Similarity=0.206 Sum_probs=171.5
Q ss_pred EEEEeCC----CcEEEEEC--CCCeEE--EEeecCCCcEEEEEEe-CCCEEEEEEc----CCeEEEEeCCCC--e--EEE
Q 001039 896 VVSGSDD----QSVLVWDK--QTSQLL--EELKGHDAQVSCVRML-SGERVLTASH----DGTVKMWDVRTD--T--CVA 958 (1179)
Q Consensus 896 l~sgs~d----g~I~iwd~--~t~~~~--~~~~~h~~~V~~l~~s-~~~~l~sgs~----dg~I~iwd~~~~--~--~~~ 958 (1179)
++.|+.. +.|.+|++ .+++.. .... .......++++ ++++|+++.. +|.|..|++... + .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 4556655 78999888 555543 2222 33445667777 6778888776 578999988764 3 333
Q ss_pred EeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCC-CceeEE---ee----------cCCCCeEEEEEcCC--EEEE
Q 001039 959 TVGRCSSAVLCMEYDDSTGILAAGG-RDAVANIWDIRA-GRQMHK---FL----------GHTKWIRSIRMDRD--TVIT 1021 (1179)
Q Consensus 959 ~~~~~~~~v~~l~~sp~~~~l~sgs-~dg~I~iwD~~~-~~~~~~---~~----------~~~~~I~sl~~~~~--~l~s 1021 (1179)
...........++++|++++++++. .+|.+.++++.. +..... +. .......++.++++ ++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 3333455677899999999998887 589999999987 433222 11 11235677888654 5555
Q ss_pred Ee-CCCcEEEEEccCCe--ee--EEee-cCCcCEEEEEEecCCCEEEEEe-CCCcEEEEEcCC-CCcceEEEeeccc---
Q 001039 1022 GS-DDWTARMWSISRGT--CD--AVLA-CHAGPVQCVEYSSSDRGIITGS-SDGLLRFWENDD-AGGIKCVKNVTIH--- 1090 (1179)
Q Consensus 1022 gs-~dg~I~iwd~~~~~--~~--~~~~-~h~~~V~~l~~spdg~~l~sgs-~Dg~I~iwd~~~-~~~~~~~~~~~~h--- 1090 (1179)
.. ....|.+|+++... .. ..+. ......+.++|+|+++++.+.. .++.|.++++.. .+....+......
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 43 45679999987654 21 2222 3446688999999999986655 578899999982 2334444333221
Q ss_pred -----CceEEEEecCCCEEEEEE-CCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEE
Q 001039 1091 -----SSAILSINAGDHWLGIGA-ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSG 1164 (1179)
Q Consensus 1091 -----~~~i~sis~dg~~lasgs-~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasg 1164 (1179)
...-..++|||++|.++. .+++|.+|++... +|. + +.+..........+.++++|||++|+++
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~-------~g~-l---~~~~~~~~~G~~Pr~~~~s~~g~~l~Va 309 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA-------TGT-L---TLVQTVPTGGKFPRHFAFSPDGRYLYVA 309 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT-------TTT-E---EEEEEEEESSSSEEEEEE-TTSSEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC-------CCc-e---EEEEEEeCCCCCccEEEEeCCCCEEEEE
Confidence 223366799999988766 5678999999532 221 1 2222222233447899999999999988
Q ss_pred e-CCCcEEEEECC
Q 001039 1165 G-RNGLLRLWEAT 1176 (1179)
Q Consensus 1165 s-~Dg~I~vWdv~ 1176 (1179)
+ .++.|.+|+++
T Consensus 310 ~~~s~~v~vf~~d 322 (345)
T PF10282_consen 310 NQDSNTVSVFDID 322 (345)
T ss_dssp ETTTTEEEEEEEE
T ss_pred ecCCCeEEEEEEe
Confidence 7 56689999774
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.13 E-value=1.8e-07 Score=105.82 Aligned_cols=257 Identities=12% Similarity=0.051 Sum_probs=165.0
Q ss_pred CcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEE----------cCCeEEEEeCCCCeEEEEeccCCC------
Q 001039 903 QSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTAS----------HDGTVKMWDVRTDTCVATVGRCSS------ 965 (1179)
Q Consensus 903 g~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs----------~dg~I~iwd~~~~~~~~~~~~~~~------ 965 (1179)
++|.+.|..+++.+.++.....+-. + ++ +++.++++. .+..|.+||..+++.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 8999999999999998875444433 4 66 666666554 478999999999999988854222
Q ss_pred -cEEEEEEcCCCCEEEEEe-C-CCeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccC-Ceee-E
Q 001039 966 -AVLCMEYDDSTGILAAGG-R-DAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISR-GTCD-A 1040 (1179)
Q Consensus 966 -~v~~l~~sp~~~~l~sgs-~-dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~-~~~~-~ 1040 (1179)
....++++|||+++++.. . ++.|.++|+.+++.+.++.... ...-...+++...+-+.||......+.+ |+.. .
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence 334789999999999876 3 6899999999999998876533 2222233333333444566555543322 2211 1
Q ss_pred E---eecCCcCEE-EEEEec-CCCEEEEEeCCCcEEEEEcCCCCc--ceEEEee---------cccCceEEEEecCCCEE
Q 001039 1041 V---LACHAGPVQ-CVEYSS-SDRGIITGSSDGLLRFWENDDAGG--IKCVKNV---------TIHSSAILSINAGDHWL 1104 (1179)
Q Consensus 1041 ~---~~~h~~~V~-~l~~sp-dg~~l~sgs~Dg~I~iwd~~~~~~--~~~~~~~---------~~h~~~i~sis~dg~~l 1104 (1179)
. +.....++. .-.+++ +|+++..... |+|.+.|+...+. ...+..+ ........+++++++.+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 1 111000000 004456 8888877766 9999999655321 1111111 11122247888999988
Q ss_pred EEEE----------CCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCC-EEEEEe-CCCcEEE
Q 001039 1105 GIGA----------ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERK-RICSGG-RNGLLRL 1172 (1179)
Q Consensus 1105 asgs----------~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~-~Lasgs-~Dg~I~v 1172 (1179)
.+.. ..+.|.++|..+. +...... -...+..++++|||+ +|++.+ .++.|.+
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~---------------kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsV 326 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTG---------------KRLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYI 326 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCC---------------eEEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEE
Confidence 8753 2257999998744 2333221 123688999999999 877666 6888999
Q ss_pred EECCCCC
Q 001039 1173 WEATINI 1179 (1179)
Q Consensus 1173 Wdv~tg~ 1179 (1179)
.|+.+++
T Consensus 327 iD~~t~k 333 (352)
T TIGR02658 327 FDAETGK 333 (352)
T ss_pred EECcCCe
Confidence 9998874
No 262
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=1.7e-08 Score=121.10 Aligned_cols=211 Identities=10% Similarity=0.046 Sum_probs=142.8
Q ss_pred CcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEc---CCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCE
Q 001039 903 QSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASH---DGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI 978 (1179)
Q Consensus 903 g~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~---dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 978 (1179)
..|.+||.+. ...+.+..+...+.+..|+ +++.|+..+. +..|.+||+.+++.. .+....+.+.+.+|+|||+.
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 3788999854 4445666788899999999 6777777653 468999999988754 34445567788999999998
Q ss_pred EE-EEeCCC--eEEEEeCCCCceeEEeecCCCCeEEEEEc--CCEEEEEeC-CC--cEEEEEccCCeeeEEeecCCcCEE
Q 001039 979 LA-AGGRDA--VANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSD-DW--TARMWSISRGTCDAVLACHAGPVQ 1050 (1179)
Q Consensus 979 l~-sgs~dg--~I~iwD~~~~~~~~~~~~~~~~I~sl~~~--~~~l~sgs~-dg--~I~iwd~~~~~~~~~~~~h~~~V~ 1050 (1179)
++ +.+.+| .|++||+.+++. ..+..+........|+ ++.++..+. +| .|++||+.+++.. .+..+.+.+.
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~ 337 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYS 337 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCccc
Confidence 76 444454 488889987764 4455555556667775 456666553 33 6888898766543 3433455677
Q ss_pred EEEEecCCCEEEEEeCC---CcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECC------CcEEEEeCCC
Q 001039 1051 CVEYSSSDRGIITGSSD---GLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAAD------NSMSLFHRPQ 1120 (1179)
Q Consensus 1051 ~l~~spdg~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~D------g~I~iwd~~~ 1120 (1179)
...|+|||++|+..+.+ ..|.+||..++. .+.+. .+....-.+++|||+.|+..+.+ ..++++|+.+
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt--~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT--SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc--CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 78999999999887643 357888875532 22221 12223345679999998876543 2577777753
No 263
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.13 E-value=6.1e-07 Score=104.05 Aligned_cols=266 Identities=12% Similarity=0.159 Sum_probs=171.2
Q ss_pred EEEEeCC----CcEEEEcCCCCCceeE--EEe-ccccccEEEEecCCCEEEEEeC----CCcEEEEECCCC--e--EEEE
Q 001039 854 FISGSTD----CLVKIWDPSLRGSELR--ATL-KGHTRTVRAINSDRGKVVSGSD----DQSVLVWDKQTS--Q--LLEE 918 (1179)
Q Consensus 854 Lasgs~D----g~I~lWd~~~~~~~~~--~~l-~~h~~~v~~~s~d~~~l~sgs~----dg~I~iwd~~t~--~--~~~~ 918 (1179)
++.|+.+ +.|.+|+++..+.++. ... .+....-.++++++++|+++.. +|.|..|++... + .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 3455554 7899998843344332 222 2222333467899999999977 578999887653 3 3344
Q ss_pred eecCCCcEEEEEEe-CCCEEEEEE-cCCeEEEEeCCC-CeEEEE---ec----------cCCCcEEEEEEcCCCCEEEEE
Q 001039 919 LKGHDAQVSCVRML-SGERVLTAS-HDGTVKMWDVRT-DTCVAT---VG----------RCSSAVLCMEYDDSTGILAAG 982 (1179)
Q Consensus 919 ~~~h~~~V~~l~~s-~~~~l~sgs-~dg~I~iwd~~~-~~~~~~---~~----------~~~~~v~~l~~sp~~~~l~sg 982 (1179)
..........++.+ ++.+++++. .+|.|.++++.. |..... +. .......++.++|+++++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 44344555677777 677777776 589999999987 443222 21 123567899999999988886
Q ss_pred e-CCCeEEEEeCCCCc--ee--EEee-cCCCCeEEEEEcCC--E-EEEEeCCCcEEEEEcc--CCee--eEEeecC----
Q 001039 983 G-RDAVANIWDIRAGR--QM--HKFL-GHTKWIRSIRMDRD--T-VITGSDDWTARMWSIS--RGTC--DAVLACH---- 1045 (1179)
Q Consensus 983 s-~dg~I~iwD~~~~~--~~--~~~~-~~~~~I~sl~~~~~--~-l~sgs~dg~I~iwd~~--~~~~--~~~~~~h---- 1045 (1179)
. ....|.+|++.... .. ..+. ......+.+.|+++ + .++...+++|.++++. ++.. +..+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 5 34589999987654 21 2222 34456778888655 4 4556678889999998 4432 2222211
Q ss_pred --CcCEEEEEEecCCCEEEEEe-CCCcEEEEEcCC-CCcceEEEeecc--cCceEEEEecCCCEEEEEE-CCCcEEEEeC
Q 001039 1046 --AGPVQCVEYSSSDRGIITGS-SDGLLRFWENDD-AGGIKCVKNVTI--HSSAILSINAGDHWLGIGA-ADNSMSLFHR 1118 (1179)
Q Consensus 1046 --~~~V~~l~~spdg~~l~sgs-~Dg~I~iwd~~~-~~~~~~~~~~~~--h~~~i~sis~dg~~lasgs-~Dg~I~iwd~ 1118 (1179)
......++++|||++|+++. .++.|.+|+++. .+.+..+..... ....-+.++++|++|+++. .++.|.+|++
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 22578899999999988765 567899999943 344555555543 3334567799999999887 5679999987
Q ss_pred C
Q 001039 1119 P 1119 (1179)
Q Consensus 1119 ~ 1119 (1179)
.
T Consensus 322 d 322 (345)
T PF10282_consen 322 D 322 (345)
T ss_dssp E
T ss_pred e
Confidence 5
No 264
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.13 E-value=2.7e-07 Score=102.02 Aligned_cols=371 Identities=12% Similarity=0.161 Sum_probs=208.8
Q ss_pred CCCCCcccccCCcceEEEEEccCCCceeeccCceEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEee
Q 001039 757 DDQQPAEASGIGRSWVQSMFSREASSRSHSFSRVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCV 836 (1179)
Q Consensus 757 ~~~~~~~~~gh~~~i~~~~fSpdg~~las~~~dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s 836 (1179)
..+++.++..|-.-+....|+|||+.+|.+ |+|--++.+.. .+....+..+.+..+.|-
T Consensus 67 k~g~~~ritS~lGVvnn~kf~pdGrkvaf~----rv~~~ss~~ta-----------------Dly~v~~e~Ge~kRiTyf 125 (668)
T COG4946 67 KDGKPLRITSGLGVVNNPKFSPDGRKVAFS----RVMLGSSLQTA-----------------DLYVVPSEDGEAKRITYF 125 (668)
T ss_pred ccCCeeEEecccceeccccCCCCCcEEEEE----EEEecCCCccc-----------------cEEEEeCCCCcEEEEEEe
Confidence 567778887777777777999999998862 34433322210 233333333444444443
Q ss_pred cccceeccccccCCCCEEEEEeCCCcE----EEEcCCCCCceeEEEeccccccEEEE-ecCCCEEEEE------------
Q 001039 837 TKREVWDLVGDREDAGFFISGSTDCLV----KIWDPSLRGSELRATLKGHTRTVRAI-NSDRGKVVSG------------ 899 (1179)
Q Consensus 837 ~~~~~~~~~~~s~d~~~Lasgs~Dg~I----~lWd~~~~~~~~~~~l~~h~~~v~~~-s~d~~~l~sg------------ 899 (1179)
...--+.++|+|||+.+++...---. .+|.++..+.... .+ .-++.+.+ -.|| .++.|
T Consensus 126 -Gr~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e-~L--nlGpathiv~~dg-~ivigRntydLP~WK~Y 200 (668)
T COG4946 126 -GRRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE-PL--NLGPATHIVIKDG-IIVIGRNTYDLPHWKGY 200 (668)
T ss_pred -ccccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee-ec--cCCceeeEEEeCC-EEEEccCcccCcccccc
Confidence 22223556788999999987643222 2333332222111 11 11222222 3344 33332
Q ss_pred --eCCCcEEEEEC-CCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCC-CCeEEEEeccCCCcEEEEEEcCC
Q 001039 900 --SDDQSVLVWDK-QTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVR-TDTCVATVGRCSSAVLCMEYDDS 975 (1179)
Q Consensus 900 --s~dg~I~iwd~-~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~-~~~~~~~~~~~~~~v~~l~~sp~ 975 (1179)
+..| ++|-- ..|+....+-.-.+.|++-..-.+...+....+|.=.+|.+. .|+-++...... .-.+=..+.|
T Consensus 201 kGGtrG--klWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFt-dYY~R~~nsD 277 (668)
T COG4946 201 KGGTRG--KLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFT-DYYPRNANSD 277 (668)
T ss_pred cCCccc--eEEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCCch-hccccccCCC
Confidence 2233 23422 222222222222233333322233334444555554455432 133222211111 1222334568
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeec------CCC--------CeEEEEE-cCCEEEEEeCCCcEEEEEccCCeeeE
Q 001039 976 TGILAAGGRDAVANIWDIRAGRQMHKFLG------HTK--------WIRSIRM-DRDTVITGSDDWTARMWSISRGTCDA 1040 (1179)
Q Consensus 976 ~~~l~sgs~dg~I~iwD~~~~~~~~~~~~------~~~--------~I~sl~~-~~~~l~sgs~dg~I~iwd~~~~~~~~ 1040 (1179)
|+.++-. ..|.|.+||..+.+..+---+ ... -....+. ++++++..| -|...+.+...+-.++
T Consensus 278 GkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq 355 (668)
T COG4946 278 GKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ 355 (668)
T ss_pred CcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE
Confidence 8877653 468899999876543221111 000 1112222 567777776 4667776655554433
Q ss_pred EeecCCcCEEEEEEecCCCEEEEEeCCC-cEEEEEcCCCCcceEEEeecccCceEEE--EecCCCEEEEEECCCcEEEEe
Q 001039 1041 VLACHAGPVQCVEYSSSDRGIITGSSDG-LLRFWENDDAGGIKCVKNVTIHSSAILS--INAGDHWLGIGAADNSMSLFH 1117 (1179)
Q Consensus 1041 ~~~~h~~~V~~l~~spdg~~l~sgs~Dg-~I~iwd~~~~~~~~~~~~~~~h~~~i~s--is~dg~~lasgs~Dg~I~iwd 1117 (1179)
. +|.+.|.-..+..+++-++.|..|| .+-|+|.+++ .++.+...-+.|.+ ++++|++++++.....+.+.|
T Consensus 356 v--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~----e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 356 V--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG----EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred c--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc----eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 2 4677788888888888999999999 8999999883 34444455555654 489999999999999999999
Q ss_pred CCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCC----cEEEEECCCCC
Q 001039 1118 RPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNG----LLRLWEATINI 1179 (1179)
Q Consensus 1118 ~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg----~I~vWdv~tg~ 1179 (1179)
+.++. ....-+...+-|+..+|||+++++|-+--+| .|+++|+.++|
T Consensus 430 idngn---------------v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 430 IDNGN---------------VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred ecCCC---------------eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 98442 2222334556799999999999999886554 58999998865
No 265
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.10 E-value=5.5e-10 Score=128.38 Aligned_cols=270 Identities=20% Similarity=0.295 Sum_probs=185.8
Q ss_pred ccccCcccccCCCCCCCC------------CCCCCCcccccCCcceEEE--EEccCCC---ceeeccCc-eEeeeCCCCC
Q 001039 738 GQSSLSNGMPSPLSKDAT------------NDDQQPAEASGIGRSWVQS--MFSREAS---SRSHSFSR-VRKWTSDAAN 799 (1179)
Q Consensus 738 ~~~~~~~~~fSP~g~~~~------------~~~~~~~~~~gh~~~i~~~--~fSpdg~---~las~~~d-I~vWd~~~~~ 799 (1179)
.+.++.+++ +|.|++.. +..+.+.+...|-.+|-.. .|||... ++++.+.. -.+|++....
T Consensus 24 ~~~~~a~si-~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSI-NPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceee-ccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 455555555 78887321 2567778888888887544 8998764 45555555 7789887543
Q ss_pred CCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEe
Q 001039 800 ENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATL 879 (1179)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l 879 (1179)
... .--.+.||+.+|+.+.|++ .....+++++.|-.|..||+...........
T Consensus 103 ~~a----------------Ief~lhghsraitd~n~~~-----------q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~ 155 (1081)
T KOG0309|consen 103 SNA----------------IEFVLHGHSRAITDINFNP-----------QHPDVLATCSVDTYVHAWDMRSPHRPFYSTS 155 (1081)
T ss_pred ccc----------------eEEEEecCccceeccccCC-----------CCCcceeeccccccceeeeccCCCcceeeee
Confidence 211 3457899999999999985 5677899999999999999875444443333
Q ss_pred ccccccEE-EEecCCCEEEEEeCCCcEEEEECCCC-eEEEEeecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCe
Q 001039 880 KGHTRTVR-AINSDRGKVVSGSDDQSVLVWDKQTS-QLLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDT 955 (1179)
Q Consensus 880 ~~h~~~v~-~~s~d~~~l~sgs~dg~I~iwd~~t~-~~~~~~~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~ 955 (1179)
.-|++.-. .++.....+++.+..+.|.+||...| .++..+++|...|..++|. -...+.+++.||+|+.||.....
T Consensus 156 ~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 156 SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred cccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 33444332 56665566666777789999999775 5677889999999999998 45678899999999999987543
Q ss_pred EEE-EeccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEeCC---------C-CceeEEeecCCCCeEEEEE------cC
Q 001039 956 CVA-TVGRCSSAVLCMEYDDSTG--ILAAGGRDAVANIWDIR---------A-GRQMHKFLGHTKWIRSIRM------DR 1016 (1179)
Q Consensus 956 ~~~-~~~~~~~~v~~l~~sp~~~--~l~sgs~dg~I~iwD~~---------~-~~~~~~~~~~~~~I~sl~~------~~ 1016 (1179)
... .....+.+|.--.+.|-|. ++.-.-.+..+.+++.+ + .++++++.||...|..+-| ++
T Consensus 236 ~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~ 315 (1081)
T KOG0309|consen 236 TESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDG 315 (1081)
T ss_pred cccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccC
Confidence 211 1113345666666666433 22211122234444333 2 3578999999999887777 12
Q ss_pred C------EEEEEeCCCcEEEEEccC
Q 001039 1017 D------TVITGSDDWTARMWSISR 1035 (1179)
Q Consensus 1017 ~------~l~sgs~dg~I~iwd~~~ 1035 (1179)
+ .|++-+.|.++++|-+.+
T Consensus 316 d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 316 DYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred CCCccceeEEEeecCCceEeeeccH
Confidence 2 799999999999998753
No 266
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.07 E-value=6.5e-09 Score=109.44 Aligned_cols=148 Identities=12% Similarity=0.198 Sum_probs=105.9
Q ss_pred EEEEEcCCCCEEEEEeC----------CCeEEEEeCCC-CceeEEeec-CCCCeEEEEEcCC--EE--EEEeCCCcEEEE
Q 001039 968 LCMEYDDSTGILAAGGR----------DAVANIWDIRA-GRQMHKFLG-HTKWIRSIRMDRD--TV--ITGSDDWTARMW 1031 (1179)
Q Consensus 968 ~~l~~sp~~~~l~sgs~----------dg~I~iwD~~~-~~~~~~~~~-~~~~I~sl~~~~~--~l--~sgs~dg~I~iw 1031 (1179)
..+.|+++|++|++-.. -|...+|.++. +.....+.- ..+.|.+++|+|+ .+ +.|..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45778888887765433 12344554432 233444433 3457999999765 43 445567899999
Q ss_pred EccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeC---CCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEE
Q 001039 1032 SISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSS---DGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGA 1108 (1179)
Q Consensus 1032 d~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs 1108 (1179)
|++ ++.+..+. ...++.+.|+|+|+++++|+. .|.|.+||.++ .+.+...........+++|+|+++++++
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~---~~~i~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK---KKKISTFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC---CEEeeccccCcEEEEEEcCCCCEEEEEE
Confidence 996 66666653 567889999999999999874 46799999997 5667666655556677899999999987
Q ss_pred C------CCcEEEEeCCCC
Q 001039 1109 A------DNSMSLFHRPQE 1121 (1179)
Q Consensus 1109 ~------Dg~I~iwd~~~~ 1121 (1179)
. |+.++||+..++
T Consensus 163 t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred eccceeccccEEEEEecCe
Confidence 4 788999998643
No 267
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=1.7e-08 Score=115.71 Aligned_cols=273 Identities=12% Similarity=0.177 Sum_probs=187.7
Q ss_pred CceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCc-------------eeEEEeccccccEEEE--ecC
Q 001039 828 GAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGS-------------ELRATLKGHTRTVRAI--NSD 892 (1179)
Q Consensus 828 ~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~-------------~~~~~l~~h~~~v~~~--s~d 892 (1179)
....|++|. ....++|.||.||.+++-.+.+... ...+++.||.+.|.-+ +.+
T Consensus 15 vkL~c~~WN------------ke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~ 82 (1189)
T KOG2041|consen 15 VKLHCAEWN------------KESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN 82 (1189)
T ss_pred ceEEEEEEc------------ccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc
Confidence 445777776 7899999999999999998753221 2346788999998854 566
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEe--ecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEE
Q 001039 893 RGKVVSGSDDQSVLVWDKQTSQLLEEL--KGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLC 969 (1179)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~~--~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~ 969 (1179)
.+.|-++..+|.|.+|-+-.|.-.... ....+.|.+++|+ +|..++....||.|.+=.++..+. ..-.-.......
T Consensus 83 ~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI-wgKeLkg~~l~h 161 (1189)
T KOG2041|consen 83 NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI-WGKELKGQLLAH 161 (1189)
T ss_pred cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee-cchhcchheccc
Confidence 778999999999999988776543322 2345678899998 899999999999998877654432 221112233457
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCc-------eeE----EeecCCCCeEEEEEc--------C--CEEEEEeCCCcE
Q 001039 970 MEYDDSTGILAAGGRDAVANIWDIRAGR-------QMH----KFLGHTKWIRSIRMD--------R--DTVITGSDDWTA 1028 (1179)
Q Consensus 970 l~~sp~~~~l~sgs~dg~I~iwD~~~~~-------~~~----~~~~~~~~I~sl~~~--------~--~~l~sgs~dg~I 1028 (1179)
+.|++|.+.++.+-.+|.+.++|....- +.. .+......|..+.|. | -.++++..+|.+
T Consensus 162 v~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~ 241 (1189)
T KOG2041|consen 162 VLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRM 241 (1189)
T ss_pred eeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCcee
Confidence 8999999999888899999999976421 111 112223346667762 1 279999999999
Q ss_pred EEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCC---------cEEEEEcCCCCcceEEEeecccCceEEEEec
Q 001039 1029 RMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDG---------LLRFWENDDAGGIKCVKNVTIHSSAILSINA 1099 (1179)
Q Consensus 1029 ~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg---------~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~ 1099 (1179)
.+-.-.+......+. ..-.+....|+++|..|+.++.|. .|.++..-. ..+.+++.....|+++++
T Consensus 242 QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G----~i~gtlkvpg~~It~lsW 316 (1189)
T KOG2041|consen 242 QIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG----HIVGTLKVPGSCITGLSW 316 (1189)
T ss_pred hhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEeccch----hheEEEecCCceeeeeEE
Confidence 887655443333333 236788999999999999988542 455554332 455666667777888876
Q ss_pred CCC--EEEEEECCCcEEEEeCC
Q 001039 1100 GDH--WLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1100 dg~--~lasgs~Dg~I~iwd~~ 1119 (1179)
.|. .+|.+ .|+.|++=++.
T Consensus 317 Eg~gLriA~A-vdsfiyfanIR 337 (1189)
T KOG2041|consen 317 EGTGLRIAIA-VDSFIYFANIR 337 (1189)
T ss_pred cCCceEEEEE-ecceEEEEeec
Confidence 554 33333 46666665554
No 268
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.06 E-value=8.1e-09 Score=108.71 Aligned_cols=129 Identities=8% Similarity=0.163 Sum_probs=91.6
Q ss_pred EEEEEccC-CeeeEEeec-CCcCEEEEEEecCCCEEEEE--eCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCE
Q 001039 1028 ARMWSISR-GTCDAVLAC-HAGPVQCVEYSSSDRGIITG--SSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHW 1103 (1179)
Q Consensus 1028 I~iwd~~~-~~~~~~~~~-h~~~V~~l~~spdg~~l~sg--s~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~ 1103 (1179)
..+|.++. +.....+.- ..++|.+++|+|+|+.+++. ..++.|.+||++. ..+..+.........++|+|++
T Consensus 39 ~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~----~~i~~~~~~~~n~i~wsP~G~~ 114 (194)
T PF08662_consen 39 FELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG----KKIFSFGTQPRNTISWSPDGRF 114 (194)
T ss_pred EEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc----cEeEeecCCCceEEEECCCCCE
Confidence 44444422 233344432 45679999999999997654 4678999999973 5555565544555678999999
Q ss_pred EEEEECC---CcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeC------CCcEEEEE
Q 001039 1104 LGIGAAD---NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGR------NGLLRLWE 1174 (1179)
Q Consensus 1104 lasgs~D---g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~------Dg~I~vWd 1174 (1179)
+++|+.+ |.|.+||+.+. +.+.... | ..++.++|||||+++++++. |..++||+
T Consensus 115 l~~~g~~n~~G~l~~wd~~~~---------------~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 115 LVLAGFGNLNGDLEFWDVRKK---------------KKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred EEEEEccCCCcEEEEEECCCC---------------EEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 9998754 67999999732 3333332 2 34789999999999999864 78899999
Q ss_pred CCC
Q 001039 1175 ATI 1177 (1179)
Q Consensus 1175 v~t 1177 (1179)
...
T Consensus 178 ~~G 180 (194)
T PF08662_consen 178 FQG 180 (194)
T ss_pred ecC
Confidence 853
No 269
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=6.1e-10 Score=123.71 Aligned_cols=281 Identities=17% Similarity=0.305 Sum_probs=185.4
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC-----ceeEEEeccccccEEEE--ec
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG-----SELRATLKGHTRTVRAI--NS 891 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~-----~~~~~~l~~h~~~v~~~--s~ 891 (1179)
.+..+.||+..|.+++-. .+.+-+++++.|.+|++|.+...+ ..+..+++.|+.+|..+ -.
T Consensus 727 rL~nf~GH~~~iRai~Ai------------dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~ 794 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAI------------DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA 794 (1034)
T ss_pred eeecccCcHHHhHHHHhc------------ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee
Confidence 466788999999988765 567889999999999999986322 23667889999999875 45
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEee-----cCCCcEEEEEEeCCCEEEEE-EcCCeEEEEeCCCCeEEEEec----
Q 001039 892 DRGKVVSGSDDQSVLVWDKQTSQLLEELK-----GHDAQVSCVRMLSGERVLTA-SHDGTVKMWDVRTDTCVATVG---- 961 (1179)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~~~~~~~~-----~h~~~V~~l~~s~~~~l~sg-s~dg~I~iwd~~~~~~~~~~~---- 961 (1179)
+.+++++ .||-|.+||.--|+.+.... +..+.|.|+.--+...+++| +...+|+++|.+.++....++
T Consensus 795 ~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna 872 (1034)
T KOG4190|consen 795 DLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA 872 (1034)
T ss_pred ccceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccC
Confidence 5566654 47889999987777665331 22334555443344555554 778999999999987766553
Q ss_pred -cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE-cCCEEEEEeCCCcEEE-EEccCCee
Q 001039 962 -RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM-DRDTVITGSDDWTARM-WSISRGTC 1038 (1179)
Q Consensus 962 -~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~-~~~~l~sgs~dg~I~i-wd~~~~~~ 1038 (1179)
+.+..+.+++..+.|++++++-.+|.|.+.|.++|+.+..++...-....++- +...++....|.++.+ |..-+|..
T Consensus 873 ~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVnWhaldgim 952 (1034)
T KOG4190|consen 873 PGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIM 952 (1034)
T ss_pred CCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCee
Confidence 34567899999999999999999999999999999998887665544444444 4457777778888888 87766655
Q ss_pred eEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCC-CcceEEEeecc--cCceEEEE--ecCCCEEEEEECCCcE
Q 001039 1039 DAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDA-GGIKCVKNVTI--HSSAILSI--NAGDHWLGIGAADNSM 1113 (1179)
Q Consensus 1039 ~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~-~~~~~~~~~~~--h~~~i~si--s~dg~~lasgs~Dg~I 1113 (1179)
....+....+..-+ -.-|..++++.....+.+|.-... .....+..++. ..+..+++ -|-+.-+..|...|.|
T Consensus 953 h~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~I 1030 (1034)
T KOG4190|consen 953 HLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAI 1030 (1034)
T ss_pred eeccCCCCcchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCce
Confidence 44433222221111 112556677766666667642210 00111111111 12223333 3445556667777777
Q ss_pred EE
Q 001039 1114 SL 1115 (1179)
Q Consensus 1114 ~i 1115 (1179)
.+
T Consensus 1031 aL 1032 (1034)
T KOG4190|consen 1031 AL 1032 (1034)
T ss_pred ee
Confidence 65
No 270
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.03 E-value=3.1e-08 Score=113.26 Aligned_cols=183 Identities=15% Similarity=0.231 Sum_probs=145.9
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeEEEecc--c-ccc----EEEE------------------ecCCCEEEEEeCCC
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKG--H-TRT----VRAI------------------NSDRGKVVSGSDDQ 903 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~--h-~~~----v~~~------------------s~d~~~l~sgs~dg 903 (1179)
+-..++|....||.+++||...+ .+...+.. | ++. .+.+ +.|...++-|...|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~--~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKN--QLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred chhheEeecCCCCeEEEEEccCc--eeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 56789999999999999997632 22222221 1 111 1111 23445688889999
Q ss_pred cEEEEECCCCeEEEEee--cCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEE
Q 001039 904 SVLVWDKQTSQLLEELK--GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILA 980 (1179)
Q Consensus 904 ~I~iwd~~t~~~~~~~~--~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~ 980 (1179)
.|.+|++..|+....+. .|.+.|.++.++ +-..|.+++.|+.+..|+...+..++..+.....+.+++.+|||..++
T Consensus 81 ~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred cEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 99999999999888775 689999999988 567799999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE--c-----CCE-EEEEeCCCcEEEEEccC
Q 001039 981 AGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM--D-----RDT-VITGSDDWTARMWSISR 1035 (1179)
Q Consensus 981 sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~--~-----~~~-l~sgs~dg~I~iwd~~~ 1035 (1179)
+++ +.|.+||+++++.+.++.||.++|.+++| + +.+ |.+...+..+.+|-+..
T Consensus 161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 887 68999999999999999999999999998 2 334 44445566678887654
No 271
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=5.1e-07 Score=104.05 Aligned_cols=389 Identities=11% Similarity=0.091 Sum_probs=218.7
Q ss_pred cceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecccc
Q 001039 769 RSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVG 846 (1179)
Q Consensus 769 ~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~ 846 (1179)
-..-+++|.....++|+|+.| ++|-.+++........ .......-..-+++.||++.|.-+.|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWN---------- 80 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWN---------- 80 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEec----------
Confidence 345667999999999999999 8888777655332111 111122223446899999999999997
Q ss_pred ccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE--EEecCCCEEEEEeCCCcEEEEECCCCe----------
Q 001039 847 DREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQ---------- 914 (1179)
Q Consensus 847 ~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~l~sgs~dg~I~iwd~~t~~---------- 914 (1179)
.+.+.|-|...+|.|.+|-+-.+.......-....+.|. ++..||..++....||.|.+=.++..+
T Consensus 81 --e~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~ 158 (1189)
T KOG2041|consen 81 --ENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQL 158 (1189)
T ss_pred --cccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhe
Confidence 678888899999999999875333322112222333343 445677777776666666543332111
Q ss_pred ---------------------EE---------------------EEeecCCCcEEEEEEeC---------CCEEEEEEcC
Q 001039 915 ---------------------LL---------------------EELKGHDAQVSCVRMLS---------GERVLTASHD 943 (1179)
Q Consensus 915 ---------------------~~---------------------~~~~~h~~~V~~l~~s~---------~~~l~sgs~d 943 (1179)
.. ..+......|..+.|.. ...++++..+
T Consensus 159 l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~n 238 (1189)
T KOG2041|consen 159 LAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYAN 238 (1189)
T ss_pred ccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcC
Confidence 00 00011112244455532 2357777777
Q ss_pred CeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC---------eEEEEeCCCCceeEEeecCCCCeEEEEE
Q 001039 944 GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDA---------VANIWDIRAGRQMHKFLGHTKWIRSIRM 1014 (1179)
Q Consensus 944 g~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg---------~I~iwD~~~~~~~~~~~~~~~~I~sl~~ 1014 (1179)
|.+.+..-.+......+ ...-.+....|+++|..+++++.+. .|.+|. .-|+.+.+++.....|++++|
T Consensus 239 Gr~QiMR~eND~~Pvv~-dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsW 316 (1189)
T KOG2041|consen 239 GRMQIMRSENDPEPVVV-DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSW 316 (1189)
T ss_pred ceehhhhhcCCCCCeEE-ecccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEE
Confidence 77777655444322222 2235678899999999999987542 344444 347788888889999999999
Q ss_pred cCC-EEEEEeCCCcEEEEEccCC--------eeeEEeecCCc---------------------CEEEEEEecCCCEEEEE
Q 001039 1015 DRD-TVITGSDDWTARMWSISRG--------TCDAVLACHAG---------------------PVQCVEYSSSDRGIITG 1064 (1179)
Q Consensus 1015 ~~~-~l~sgs~dg~I~iwd~~~~--------~~~~~~~~h~~---------------------~V~~l~~spdg~~l~sg 1064 (1179)
.+. .-++-..|+.|++=+++-. +.+....+... ...+++++.+--.|+.-
T Consensus 317 Eg~gLriA~AvdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~ 396 (1189)
T KOG2041|consen 317 EGTGLRIAIAVDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINR 396 (1189)
T ss_pred cCCceEEEEEecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEec
Confidence 765 2222234556655444321 11222222222 23345555555555555
Q ss_pred eCCCcEEEEEcCCCCcceEEEeec---c--cCceEEEE-----ecCCCEEEEEECCCcEEEEeCCCCCcC----------
Q 001039 1065 SSDGLLRFWENDDAGGIKCVKNVT---I--HSSAILSI-----NAGDHWLGIGAADNSMSLFHRPQERLG---------- 1124 (1179)
Q Consensus 1065 s~Dg~I~iwd~~~~~~~~~~~~~~---~--h~~~i~si-----s~dg~~lasgs~Dg~I~iwd~~~~~~~---------- 1124 (1179)
..||.+.-++.-..........+. | -....+.+ .-++..++.+|.+ .+.+|.....+..
T Consensus 397 ~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rk 475 (1189)
T KOG2041|consen 397 QDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRK 475 (1189)
T ss_pred cccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcc
Confidence 666666555322111111011110 0 01111222 3467777877776 6788986433221
Q ss_pred --cccC----CCCccccc-eeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1125 --GFSG----TGSKMSGW-QLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1125 --~~~~----~g~~~~~~-~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
.+.. +|..-... ....+..|...+|-+++.| .++|..+-..|.|.-+.+.++
T Consensus 476 egr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv 534 (1189)
T KOG2041|consen 476 EGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNV 534 (1189)
T ss_pred cccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecce
Confidence 1111 11000000 0124556777888888875 468888989999998887653
No 272
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.02 E-value=5.4e-08 Score=111.26 Aligned_cols=185 Identities=12% Similarity=0.213 Sum_probs=153.6
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeEEEEeec---CCCcEEEEEEe---------------------CCCEEEEEEcCCeE
Q 001039 891 SDRGKVVSGSDDQSVLVWDKQTSQLLEELKG---HDAQVSCVRML---------------------SGERVLTASHDGTV 946 (1179)
Q Consensus 891 ~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~---h~~~V~~l~~s---------------------~~~~l~sgs~dg~I 946 (1179)
+...++|....||.+++||..+++....+.. -.+..++..|. +...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4467899999999999999999987776642 22334444441 33468888999999
Q ss_pred EEEeCCCCeEEEEec--cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC--EEEEE
Q 001039 947 KMWDVRTDTCVATVG--RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITG 1022 (1179)
Q Consensus 947 ~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~--~l~sg 1022 (1179)
.+|++..|+....+. .|.+.|.++.++.+-..|.+++.|+.+..|+....+.+..+......+.++++.++ .++++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999999887775 58899999999999999999999999999999999999999999999999999776 77766
Q ss_pred eCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecC-----CCEEEEEe-CCCcEEEEEcCC
Q 001039 1023 SDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSS-----DRGIITGS-SDGLLRFWENDD 1077 (1179)
Q Consensus 1023 s~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd-----g~~l~sgs-~Dg~I~iwd~~~ 1077 (1179)
.+.|++||+++++.+..+.+|.++|+++.|..+ |.++.++. .+..+.+|-...
T Consensus 163 --s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 163 --SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred --cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 568999999999999999999999999999877 77776554 455577887765
No 273
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.01 E-value=1.7e-08 Score=107.65 Aligned_cols=240 Identities=16% Similarity=0.250 Sum_probs=165.9
Q ss_pred ccccCCcceEEEEEccCCCceeeccCc--eEeeeC-CCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeeccc
Q 001039 763 EASGIGRSWVQSMFSREASSRSHSFSR--VRKWTS-DAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKR 839 (1179)
Q Consensus 763 ~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~ 839 (1179)
...||...+.....-|...-+.+.+.| +|+|-- +.++. -..+...-..+++++.+.
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~------------------wpsI~~~mP~~~~~~~y~--- 77 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQY------------------WPSIYHYMPSPCSAMEYV--- 77 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEecccccc------------------CchhhhhCCCCceEeeee---
Confidence 346776777666666666677788888 999943 33331 011222345678888887
Q ss_pred ceeccccccCCCCEEEEEeCCCcEEEEcCC--CCCceeEEEeccccccEEEE--ecCCCEEEEEeCCCcEEEEECCCCeE
Q 001039 840 EVWDLVGDREDAGFFISGSTDCLVKIWDPS--LRGSELRATLKGHTRTVRAI--NSDRGKVVSGSDDQSVLVWDKQTSQL 915 (1179)
Q Consensus 840 ~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~--~~~~~~~~~l~~h~~~v~~~--s~d~~~l~sgs~dg~I~iwd~~t~~~ 915 (1179)
++...|+.|-.+|++.-+.+. .+.....+....|...+.++ +....++++.+.|..+.---.+.+..
T Consensus 78 ---------~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~ 148 (404)
T KOG1409|consen 78 ---------SESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR 148 (404)
T ss_pred ---------ccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCc
Confidence 788899999999999988764 22334456677899988875 56678899999998765444444444
Q ss_pred EEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeC--CCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 001039 916 LEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDV--RTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDI 993 (1179)
Q Consensus 916 ~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~--~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~ 993 (1179)
+..+.- ....+++.+.-+ +...|...|.|..-.+ ..-..+.++.+|.+.+.+++|.+....+.+|..|..+.+||+
T Consensus 149 lg~Y~~-~~~~t~~~~d~~-~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdi 226 (404)
T KOG1409|consen 149 LGGYNF-ETPASALQFDAL-YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDI 226 (404)
T ss_pred ccceEe-eccCCCCceeeE-EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEec
Confidence 332210 011111111101 4455666666655443 345667888999999999999999999999999999999999
Q ss_pred CCCce-eEEeecCCCCeEEEEE--cCCEEEEEeCCCcEEEEEcc
Q 001039 994 RAGRQ-MHKFLGHTKWIRSIRM--DRDTVITGSDDWTARMWSIS 1034 (1179)
Q Consensus 994 ~~~~~-~~~~~~~~~~I~sl~~--~~~~l~sgs~dg~I~iwd~~ 1034 (1179)
.-.+- ...+.+|...|..+.. .-..+++++.||.|.+||++
T Consensus 227 gg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 227 GGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred cCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 75543 4567789888888876 34589999999999999975
No 274
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.00 E-value=2.6e-08 Score=106.15 Aligned_cols=239 Identities=11% Similarity=0.240 Sum_probs=158.7
Q ss_pred cCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC---ceeEEEecccccc------------EEE--E
Q 001039 827 AGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG---SELRATLKGHTRT------------VRA--I 889 (1179)
Q Consensus 827 ~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~---~~~~~~l~~h~~~------------v~~--~ 889 (1179)
.+-|.+|.|. .+|.+||||..+|.|.++.-.... ......++.|... |.. +
T Consensus 25 adiis~vef~------------~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw 92 (433)
T KOG1354|consen 25 ADIISAVEFD------------HYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRW 92 (433)
T ss_pred hcceeeEEee------------cccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhcee
Confidence 3456777775 899999999999999999743211 1234455566542 222 2
Q ss_pred ec--CCCEEEEEeCCCcEEEEECCCCe-----------------------------------EEEEe-ecCCCcEEEEEE
Q 001039 890 NS--DRGKVVSGSDDQSVLVWDKQTSQ-----------------------------------LLEEL-KGHDAQVSCVRM 931 (1179)
Q Consensus 890 s~--d~~~l~sgs~dg~I~iwd~~t~~-----------------------------------~~~~~-~~h~~~V~~l~~ 931 (1179)
.. +...++..+.|.+|++|.+.... +.+.+ ..|.-.|.++.+
T Consensus 93 ~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~ 172 (433)
T KOG1354|consen 93 LDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISV 172 (433)
T ss_pred cCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeee
Confidence 23 34567888899999999874321 01111 257777888988
Q ss_pred eCCCEEEEEEcCCeEEEEeCCCCeE---EEEeccC-----CCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeE--
Q 001039 932 LSGERVLTASHDGTVKMWDVRTDTC---VATVGRC-----SSAVLCMEYDD-STGILAAGGRDAVANIWDIRAGRQMH-- 1000 (1179)
Q Consensus 932 s~~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~~-----~~~v~~l~~sp-~~~~l~sgs~dg~I~iwD~~~~~~~~-- 1000 (1179)
+.+...+....|=.|.+|+++--.. +.-++.+ ..-|++..|+| ..+.++-.++.|+|++-|+|.....-
T Consensus 173 NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h 252 (433)
T KOG1354|consen 173 NSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH 252 (433)
T ss_pred cCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch
Confidence 8544444555678899999864322 2222222 34588999999 46778888899999999999543211
Q ss_pred --Ee------------ecCCCCeEEEEEc--CCEEEEEeCCCcEEEEEc-cCCeeeEEeecCCc------------C---
Q 001039 1001 --KF------------LGHTKWIRSIRMD--RDTVITGSDDWTARMWSI-SRGTCDAVLACHAG------------P--- 1048 (1179)
Q Consensus 1001 --~~------------~~~~~~I~sl~~~--~~~l~sgs~dg~I~iwd~-~~~~~~~~~~~h~~------------~--- 1048 (1179)
.+ .+--..|..+.|+ |+++++-+ =-+|++||+ ...+++.++.-|.. .
T Consensus 253 sKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~Ifd 331 (433)
T KOG1354|consen 253 SKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFD 331 (433)
T ss_pred hhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhh
Confidence 11 1122356777784 45666553 368999999 45566777665532 2
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 001039 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDDA 1078 (1179)
Q Consensus 1049 V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~ 1078 (1179)
-..++|+.++.+++||+.....++++...+
T Consensus 332 KFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 332 KFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred eeEEEEcCCcceEecccccceEEEecCCCC
Confidence 246789999999999999999999997653
No 275
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.00 E-value=2.4e-09 Score=133.84 Aligned_cols=188 Identities=15% Similarity=0.282 Sum_probs=150.4
Q ss_pred CCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEecc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Q 001039 922 HDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGR-CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM 999 (1179)
Q Consensus 922 h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~ 999 (1179)
+-..|.++.-+ ...+.++|+.||.|++|....++.+..+.. ....|+.+.|+.+|+.+..+..||.+.+|.+. .++.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~ 2285 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPY 2285 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccce
Confidence 44556666655 356788999999999999988887776642 34789999999999999999999999999987 6777
Q ss_pred EEeecCCCCeEEEEEcCCEEEEEe---CCCcEEEEEccCCe-eeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEc
Q 001039 1000 HKFLGHTKWIRSIRMDRDTVITGS---DDWTARMWSISRGT-CDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEN 1075 (1179)
Q Consensus 1000 ~~~~~~~~~I~sl~~~~~~l~sgs---~dg~I~iwd~~~~~-~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~ 1075 (1179)
...+.|......+.|-+..+++++ .++.+.+||..-.. .-..-.+|.+.++++++-|..+.+++|+.+|.|++||+
T Consensus 2286 ~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~ 2365 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDI 2365 (2439)
T ss_pred eccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeeh
Confidence 778889999999999777777765 56889999974322 11122789999999999999999999999999999999
Q ss_pred CCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCCCC
Q 001039 1076 DDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQE 1121 (1179)
Q Consensus 1076 ~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~ 1121 (1179)
+. .+....++. +. ...++++|+..|.|+||++..-
T Consensus 2366 rq---rql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2366 RQ---RQLRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred HH---HHHHHHhhh-------hh-hhheeeccCcccceEEEEcccc
Confidence 87 233322222 33 5678999999999999999754
No 276
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.99 E-value=4.3e-08 Score=102.66 Aligned_cols=239 Identities=16% Similarity=0.204 Sum_probs=164.4
Q ss_pred ccCceEEEEeecccceeccccccCCCC-EEEEEeCCCcEEEEcCCCCCceeEEEecc---ccccEE-----EEecCCCEE
Q 001039 826 HAGAITALHCVTKREVWDLVGDREDAG-FFISGSTDCLVKIWDPSLRGSELRATLKG---HTRTVR-----AINSDRGKV 896 (1179)
Q Consensus 826 H~~~V~~v~~s~~~~~~~~~~~s~d~~-~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~---h~~~v~-----~~s~d~~~l 896 (1179)
.+..+..+.|+... .+|. .++-+..+|.|.++..+. ......+.+ -.-.+. .+++.+..+
T Consensus 68 dts~~~dm~w~~~~---------~~g~~~l~~a~a~G~i~~~r~~~--~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i 136 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRE---------TDGDFNLLDAHARGQIQLYRNDE--DESSVHLRGLSSKKISVVEALSLDISTSGTKI 136 (339)
T ss_pred cccccceeeeeecc---------CCccceeeeccccceEEEEeecc--ceeeeeecccchhhhhheeeeEEEeeccCceE
Confidence 44566777776321 2444 566777889999998652 222222322 222222 357788889
Q ss_pred EEEeCCCcEEEEECCCCeEE--EEeecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCC-CCeEEEE-eccCCCcEEEE
Q 001039 897 VSGSDDQSVLVWDKQTSQLL--EELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVR-TDTCVAT-VGRCSSAVLCM 970 (1179)
Q Consensus 897 ~sgs~dg~I~iwd~~t~~~~--~~~~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~-~~~~~~~-~~~~~~~v~~l 970 (1179)
+++..+|.+.+-+...+... +.++.|+-.++...|+ +.+.+.+|+.||.+..||++ .++.+.. .+.|...|.++
T Consensus 137 ~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI 216 (339)
T KOG0280|consen 137 FVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSI 216 (339)
T ss_pred EEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEE
Confidence 99999999997766655444 4789999999999998 56889999999999999999 4455544 45688899999
Q ss_pred EEcC-CCCEEEEEeCCCeEEEEeCCC-CceeEEeecCCCCeEEEEEcCC---EEEEEeCCCcEEEEEccCCe-----eeE
Q 001039 971 EYDD-STGILAAGGRDAVANIWDIRA-GRQMHKFLGHTKWIRSIRMDRD---TVITGSDDWTARMWSISRGT-----CDA 1040 (1179)
Q Consensus 971 ~~sp-~~~~l~sgs~dg~I~iwD~~~-~~~~~~~~~~~~~I~sl~~~~~---~l~sgs~dg~I~iwd~~~~~-----~~~ 1040 (1179)
.-+| .+.++++|+.|..|++||.|+ ++++..- ...+.|+.+.+.+. .++.++.-.-.+|-+.+.+. ...
T Consensus 217 ~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~ 295 (339)
T KOG0280|consen 217 YSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLP 295 (339)
T ss_pred ecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeee
Confidence 9887 678999999999999999995 5665543 33478999998765 23444444446666665442 334
Q ss_pred EeecCCcCEEEEEEecCCCEEEEEe-CCCcEE-EEEcC
Q 001039 1041 VLACHAGPVQCVEYSSSDRGIITGS-SDGLLR-FWEND 1076 (1179)
Q Consensus 1041 ~~~~h~~~V~~l~~spdg~~l~sgs-~Dg~I~-iwd~~ 1076 (1179)
..+.|.+-+..-.|......++|++ .|..++ +|-.-
T Consensus 296 s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~ 333 (339)
T KOG0280|consen 296 SDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHI 333 (339)
T ss_pred ccccccceeeccccccccceeeeeeccccceeeeeeec
Confidence 4556777777777755556788866 455544 66433
No 277
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.98 E-value=3.5e-07 Score=108.34 Aligned_cols=299 Identities=12% Similarity=0.055 Sum_probs=179.7
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeEEEecccc---------c-cEE-EEecCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 001039 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHT---------R-TVR-AINSDRGKVVSGSDDQSVLVWDKQTSQLLEEL 919 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~---------~-~v~-~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~ 919 (1179)
+..+++++.+|.|.-+|... .+.+....-.. . .+. ....++..++.++.+|.+..+|.++|+.+.+.
T Consensus 69 ~~~vy~~~~~g~l~ald~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADT--GKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCC--CcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 45666666777777777652 22222221111 0 111 12235677888889999999999999998887
Q ss_pred ecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEE-EEEEcC--CCCEEEEEeCCCeEEEEeCCCC
Q 001039 920 KGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVL-CMEYDD--STGILAAGGRDAVANIWDIRAG 996 (1179)
Q Consensus 920 ~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~-~l~~sp--~~~~l~sgs~dg~I~iwD~~~~ 996 (1179)
+........... .++.++.++.+|.+..+|.++|+.+........... ...-+| .+..++.++.+|.+..+|..+|
T Consensus 147 ~~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G 225 (394)
T PRK11138 147 KVAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQG 225 (394)
T ss_pred cCCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCC
Confidence 654322211222 356778888899999999999999887753211100 000111 2335677788999999999999
Q ss_pred ceeEEeecCCC----C-------eEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEe
Q 001039 997 RQMHKFLGHTK----W-------IRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS 1065 (1179)
Q Consensus 997 ~~~~~~~~~~~----~-------I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs 1065 (1179)
+.+.+...... . ..+-...++.++.++.+|.+..+|..+|+.+..... +....+. ..+..++.++
T Consensus 226 ~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~--~~~~~vy~~~ 301 (394)
T PRK11138 226 QLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFA--VDGGRIYLVD 301 (394)
T ss_pred hhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcE--EECCEEEEEc
Confidence 87655431110 0 112223466788888899999999999987765432 1112222 2467788888
Q ss_pred CCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCC
Q 001039 1066 SDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKT 1145 (1179)
Q Consensus 1066 ~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h 1145 (1179)
.+|.+..+|..+++......... + ....+....+..++.++.||.++..|.. +|+.+ ....-.
T Consensus 302 ~~g~l~ald~~tG~~~W~~~~~~-~-~~~~sp~v~~g~l~v~~~~G~l~~ld~~---------tG~~~------~~~~~~ 364 (394)
T PRK11138 302 QNDRVYALDTRGGVELWSQSDLL-H-RLLTAPVLYNGYLVVGDSEGYLHWINRE---------DGRFV------AQQKVD 364 (394)
T ss_pred CCCeEEEEECCCCcEEEcccccC-C-CcccCCEEECCEEEEEeCCCEEEEEECC---------CCCEE------EEEEcC
Confidence 99999999998854221111111 1 1111111246678889999999999987 44221 111111
Q ss_pred cccEE-EEEEcCCCCEEEEEeCCCcEEEEEC
Q 001039 1146 VAVVR-CIASDLERKRICSGGRNGLLRLWEA 1175 (1179)
Q Consensus 1146 ~~~V~-~v~fspdg~~Lasgs~Dg~I~vWdv 1175 (1179)
...+. ...+ .+..|+.++.||.|..++.
T Consensus 365 ~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 365 SSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 11121 1122 2457888999999988765
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.98 E-value=3.6e-09 Score=132.38 Aligned_cols=195 Identities=18% Similarity=0.325 Sum_probs=151.3
Q ss_pred ecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeC
Q 001039 824 RGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSD 901 (1179)
Q Consensus 824 ~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~ 901 (1179)
+.|-..|.++.-+ |...+-+||+.||.|++|..............|. ..|+. ++.+|+.+..+..
T Consensus 2205 k~~v~~v~r~~sH------------p~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~ 2271 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSH------------PSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDG 2271 (2439)
T ss_pred ecccCceeeecCC------------CCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeecc
Confidence 3344556666555 6778889999999999999763333333333333 56663 5889999999999
Q ss_pred CCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEE---cCCeEEEEeCCCC---eEEEEeccCCCcEEEEEEcCC
Q 001039 902 DQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTAS---HDGTVKMWDVRTD---TCVATVGRCSSAVLCMEYDDS 975 (1179)
Q Consensus 902 dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs---~dg~I~iwd~~~~---~~~~~~~~~~~~v~~l~~sp~ 975 (1179)
||.+.+|... .+.....+.|+.......|.. ..+++++ .++.+.+||..-. ..+. ..|.+.++++++-|.
T Consensus 2272 dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~ 2347 (2439)
T KOG1064|consen 2272 DGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPK 2347 (2439)
T ss_pred CCceeecccC-CcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCc
Confidence 9999999987 677778888999988888875 5566554 4788999997532 2333 689999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEee
Q 001039 976 TGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLA 1043 (1179)
Q Consensus 976 ~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 1043 (1179)
.+.+++|+.+|.|++||++..+..+.++. +. ..+++++|+..|.++||++.....+.++.
T Consensus 2348 ~qllisggr~G~v~l~D~rqrql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2348 HQLLISGGRKGEVCLFDIRQRQLRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred ceEEEecCCcCcEEEeehHHHHHHHHhhh-------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 99999999999999999998888777654 22 45699999999999999998876666654
No 279
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.98 E-value=1.2e-07 Score=113.62 Aligned_cols=209 Identities=11% Similarity=0.098 Sum_probs=137.6
Q ss_pred CcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcC---CeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCE
Q 001039 903 QSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHD---GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI 978 (1179)
Q Consensus 903 g~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 978 (1179)
..|.++|...+. .+.+..+...+....|+ ++++++.++.+ ..|.+||+.+++..... .+...+.+++|+|+|+.
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-SFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cCCCCccceEECCCCCE
Confidence 368888876443 44555566678888999 67888776643 47999999988654332 34556677899999997
Q ss_pred EEEE-eCCC--eEEEEeCCCCceeEEeecCCCCeEEEEE--cCCEEEEEeC-CC--cEEEEEccCCeeeEEeecCCcCEE
Q 001039 979 LAAG-GRDA--VANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSD-DW--TARMWSISRGTCDAVLACHAGPVQ 1050 (1179)
Q Consensus 979 l~sg-s~dg--~I~iwD~~~~~~~~~~~~~~~~I~sl~~--~~~~l~sgs~-dg--~I~iwd~~~~~~~~~~~~h~~~V~ 1050 (1179)
++.. +.++ .|++||+.+++. ..+..+........| +++.++..+. ++ .|+++|+.+++.. .+..+...+.
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 7654 3333 589999987754 334344444445566 4556665554 33 5888888776643 3444556677
Q ss_pred EEEEecCCCEEEEEeCCC---cEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCC---cEEEEeC
Q 001039 1051 CVEYSSSDRGIITGSSDG---LLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADN---SMSLFHR 1118 (1179)
Q Consensus 1051 ~l~~spdg~~l~sgs~Dg---~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg---~I~iwd~ 1118 (1179)
...|+|+|++++.++.++ .|.+||+.++. ...+.. .....-.+++|+|++|+.++.++ .+++.+.
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~-~~~l~~--~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG-ERVLTD--TGLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCC-eEEccC--CCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 889999999999888776 78889987732 222221 11122236789999988877654 3444443
No 280
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=3.3e-09 Score=118.05 Aligned_cols=281 Identities=17% Similarity=0.254 Sum_probs=186.6
Q ss_pred EEEeccccccEEEEe--cCCCEEEEEeCCCcEEEEECCC-------CeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCe
Q 001039 876 RATLKGHTRTVRAIN--SDRGKVVSGSDDQSVLVWDKQT-------SQLLEELKGHDAQVSCVRML-SGERVLTASHDGT 945 (1179)
Q Consensus 876 ~~~l~~h~~~v~~~s--~d~~~l~sgs~dg~I~iwd~~t-------~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~ 945 (1179)
...+.||...|.++. .+.+.+++++.|++|++|.++. ..+..++..|+.+|.++.|. +...++ +.||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee--eccCc
Confidence 467889999998762 4567799999999999998753 34677889999999999998 444444 55789
Q ss_pred EEEEeCCCCeEEEEecc-----CCCcEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCceeEEee-----cCCCCeEEEEE
Q 001039 946 VKMWDVRTDTCVATVGR-----CSSAVLCMEYDDSTGILAAG-GRDAVANIWDIRAGRQMHKFL-----GHTKWIRSIRM 1014 (1179)
Q Consensus 946 I~iwd~~~~~~~~~~~~-----~~~~v~~l~~sp~~~~l~sg-s~dg~I~iwD~~~~~~~~~~~-----~~~~~I~sl~~ 1014 (1179)
|++||.--|+.+..+.. ..+.|.|+.- -+...+++| +...+|+++|.+.++.+..++ +....+.+++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999887776654321 2233444432 134444444 678899999999988766654 34455677776
Q ss_pred --cCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEE-EEcCCCCcceEEEeecccC
Q 001039 1015 --DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRF-WENDDAGGIKCVKNVTIHS 1091 (1179)
Q Consensus 1015 --~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~i-wd~~~~~~~~~~~~~~~h~ 1091 (1179)
.|+.++++-.+|+|.+.|.++|+.+..+..-.-....++ .|..+.++....|.++.+ |-..++ ......+...
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg---imh~q~kppp 960 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG---IMHLQDKPPP 960 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC---eeeeccCCCC
Confidence 678999999999999999999998887765443333333 356677777778888888 876552 2222222222
Q ss_pred ceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEE
Q 001039 1092 SAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLR 1171 (1179)
Q Consensus 1092 ~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~ 1171 (1179)
.+.--+..-|..++++...+.+.+|.-... ....+ + + . .-......+..++++--|-..-+..|+..|.|.
T Consensus 961 epahflqsvgpSLV~a~~Gn~lgVYad~a~-~ha~s-t---i---t-KiR~d~f~G~lTala~LPLN~afLaGne~G~Ia 1031 (1034)
T KOG4190|consen 961 EPAHFLQSVGPSLVTAQNGNILGVYADSAE-LHAES-T---I---T-KIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIA 1031 (1034)
T ss_pred cchhhhhccCceeEEeccCcEEEEEecchh-hhhhh-h---h---c-cccccccCCccceeeeccccchhhccCCCCcee
Confidence 222222334566777777777888853211 00000 0 0 0 111233456678888888777777788899887
Q ss_pred E
Q 001039 1172 L 1172 (1179)
Q Consensus 1172 v 1172 (1179)
+
T Consensus 1032 L 1032 (1034)
T KOG4190|consen 1032 L 1032 (1034)
T ss_pred e
Confidence 5
No 281
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=1.1e-07 Score=114.04 Aligned_cols=218 Identities=12% Similarity=0.045 Sum_probs=134.2
Q ss_pred CCcccccCCcceEEEEEccCCCceeeccCc-----eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEE
Q 001039 760 QPAEASGIGRSWVQSMFSREASSRSHSFSR-----VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALH 834 (1179)
Q Consensus 760 ~~~~~~gh~~~i~~~~fSpdg~~las~~~d-----I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~ 834 (1179)
.+..+..++..+...+|||||+.++..+.+ |.+|+++++.. +.+....+.+.+.+
T Consensus 190 ~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--------------------~~l~~~~g~~~~~~ 249 (430)
T PRK00178 190 RAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--------------------EQITNFEGLNGAPA 249 (430)
T ss_pred CceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--------------------EEccCCCCCcCCeE
Confidence 344455666778888999999998876532 88999987651 22233334445567
Q ss_pred eecccceeccccccCCCCEEE-EEeCCC--cEEEEcCCCCCceeEEEeccccccE--EEEecCCCEEEEEeC-C--CcEE
Q 001039 835 CVTKREVWDLVGDREDAGFFI-SGSTDC--LVKIWDPSLRGSELRATLKGHTRTV--RAINSDRGKVVSGSD-D--QSVL 906 (1179)
Q Consensus 835 ~s~~~~~~~~~~~s~d~~~La-sgs~Dg--~I~lWd~~~~~~~~~~~l~~h~~~v--~~~s~d~~~l~sgs~-d--g~I~ 906 (1179)
|+ |||+.|+ +.+.+| .|++||+.. ... ..+..+.... ..+++||+.++..+. + ..|.
T Consensus 250 ~S------------pDG~~la~~~~~~g~~~Iy~~d~~~--~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy 314 (430)
T PRK00178 250 WS------------PDGSKLAFVLSKDGNPEIYVMDLAS--RQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIY 314 (430)
T ss_pred EC------------CCCCEEEEEEccCCCceEEEEECCC--CCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence 76 8999887 444555 578888763 322 2333333322 368999998877654 3 3577
Q ss_pred EEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcC-C--eEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEE
Q 001039 907 VWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHD-G--TVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAG 982 (1179)
Q Consensus 907 iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~d-g--~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sg 982 (1179)
++|+.+++...... .........|+ +++.++..+.+ + .|.+||+.+++....... .......|+|+|+.++..
T Consensus 315 ~~d~~~g~~~~lt~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~ 391 (430)
T PRK00178 315 KVNVNGGRAERVTF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYA 391 (430)
T ss_pred EEECCCCCEEEeec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEE
Confidence 88888776543221 22233456777 67777766543 3 588899988765332222 122356899999998877
Q ss_pred eCC---CeEEEEeCCCCceeEEeecCCCCeEEEEEcC
Q 001039 983 GRD---AVANIWDIRAGRQMHKFLGHTKWIRSIRMDR 1016 (1179)
Q Consensus 983 s~d---g~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~ 1016 (1179)
+.+ ..+.+++.. +.....+..+.+.+...+|++
T Consensus 392 ~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 392 TRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred EecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 643 357777774 333444444445555555554
No 282
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=2.1e-07 Score=111.74 Aligned_cols=219 Identities=16% Similarity=0.076 Sum_probs=135.4
Q ss_pred eEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCC---CcEEEEcCCCCCceeEEEeccccccEEEEecCCCEE
Q 001039 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTD---CLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKV 896 (1179)
Q Consensus 820 ~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~D---g~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l 896 (1179)
.+.+..|...+.+.+|+ |||+.|+..+.+ ..|.+||+.......+....++.. ..+++|||+.+
T Consensus 191 ~~~l~~~~~~~~~p~wS------------pDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~l 257 (430)
T PRK00178 191 AVTLLQSREPILSPRWS------------PDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKL 257 (430)
T ss_pred ceEEecCCCceeeeeEC------------CCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEE
Confidence 34566677788888887 899999876644 368899986433333222333222 24689999988
Q ss_pred EE-EeCCC--cEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEc-CC--eEEEEeCCCCeEEEEeccCCCcEEE
Q 001039 897 VS-GSDDQ--SVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASH-DG--TVKMWDVRTDTCVATVGRCSSAVLC 969 (1179)
Q Consensus 897 ~s-gs~dg--~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~-dg--~I~iwd~~~~~~~~~~~~~~~~v~~ 969 (1179)
+. .+.+| .|.+||+.+++.. .+..+........|+ +++.++..+. +| .|.++|+.+++..... ........
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~ 335 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNAR 335 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccc
Confidence 74 44454 6888899887654 344455556667888 6777765553 33 5778888877754332 22223345
Q ss_pred EEEcCCCCEEEEEeCC-C--eEEEEeCCCCceeEEeecCCCCeEEEEE--cCCEEEEEeC-CC--cEEEEEccCCeeeEE
Q 001039 970 MEYDDSTGILAAGGRD-A--VANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSD-DW--TARMWSISRGTCDAV 1041 (1179)
Q Consensus 970 l~~sp~~~~l~sgs~d-g--~I~iwD~~~~~~~~~~~~~~~~I~sl~~--~~~~l~sgs~-dg--~I~iwd~~~~~~~~~ 1041 (1179)
..|+|+|+.++..+.+ + .|.+||+.+++.. .+.. ........| +++.++..+. +| .+.++++. +.....
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~ 412 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLP 412 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEE
Confidence 7899999999877643 2 5889999887643 2221 112223345 4555555443 33 46677764 333444
Q ss_pred eecCCcCEEEEEEec
Q 001039 1042 LACHAGPVQCVEYSS 1056 (1179)
Q Consensus 1042 ~~~h~~~V~~l~~sp 1056 (1179)
+..+.+.+...+|+|
T Consensus 413 l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 413 LPTAQGEVREPSWSP 427 (430)
T ss_pred CcCCCCCcCCCccCC
Confidence 554556667777775
No 283
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.92 E-value=7.3e-07 Score=105.61 Aligned_cols=258 Identities=14% Similarity=0.086 Sum_probs=163.7
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE-EecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcE--
Q 001039 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA-INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQV-- 926 (1179)
Q Consensus 850 d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~-~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V-- 926 (1179)
++..++.++.+|.+..+|.+ +.+.+....... .+.+ -.-.+..++.++.+|.+..+|..+|+.+..........
T Consensus 119 ~~~~v~v~~~~g~l~ald~~--tG~~~W~~~~~~-~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 195 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAE--DGEVAWQTKVAG-EALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL 195 (394)
T ss_pred ECCEEEEEcCCCEEEEEECC--CCCCcccccCCC-ceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccc
Confidence 35667778889999999976 333333333221 1211 11235677788889999999999999998876432111
Q ss_pred ---EEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCC----C---cEEEEEEcC--CCCEEEEEeCCCeEEEEeCC
Q 001039 927 ---SCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCS----S---AVLCMEYDD--STGILAAGGRDAVANIWDIR 994 (1179)
Q Consensus 927 ---~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~----~---~v~~l~~sp--~~~~l~sgs~dg~I~iwD~~ 994 (1179)
..-.. .++.++.++.+|.+..+|..+|+.+....... . ....+..+| .+..+++++.+|.+..+|..
T Consensus 196 ~~~~sP~v-~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 196 RGESAPAT-AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred cCCCCCEE-ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 01111 24567788889999999999998766543111 0 011111222 34567777889999999999
Q ss_pred CCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCc-CEEEEEEecCCCEEEEEeCCCcEEEE
Q 001039 995 AGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAG-PVQCVEYSSSDRGIITGSSDGLLRFW 1073 (1179)
Q Consensus 995 ~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~-~V~~l~~spdg~~l~sgs~Dg~I~iw 1073 (1179)
+|+.+.+... .....+...++.++.++.+|.+..+|..+|+.+........ ...+... .+.+++.++.||.+...
T Consensus 275 tG~~~W~~~~--~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~l 350 (394)
T PRK11138 275 SGQIVWKREY--GSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWI 350 (394)
T ss_pred CCCEEEeecC--CCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEE
Confidence 9987765432 22234556778888999999999999999987665432111 1222222 25678889999999999
Q ss_pred EcCCCCcceEEEeecccCceEEE-EecCCCEEEEEECCCcEEEEeC
Q 001039 1074 ENDDAGGIKCVKNVTIHSSAILS-INAGDHWLGIGAADNSMSLFHR 1118 (1179)
Q Consensus 1074 d~~~~~~~~~~~~~~~h~~~i~s-is~dg~~lasgs~Dg~I~iwd~ 1118 (1179)
|..+++ .+.........+.+ ....+..|++++.||.++.++.
T Consensus 351 d~~tG~---~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 351 NREDGR---FVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ECCCCC---EEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEeC
Confidence 998854 33332222222221 1224567888999999988765
No 284
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.92 E-value=7.1e-09 Score=119.50 Aligned_cols=220 Identities=17% Similarity=0.264 Sum_probs=149.8
Q ss_pred cCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeE--EEeccccccEEEEe--cCCCEEEEEeCC
Q 001039 827 AGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELR--ATLKGHTRTVRAIN--SDRGKVVSGSDD 902 (1179)
Q Consensus 827 ~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~--~~l~~h~~~v~~~s--~d~~~l~sgs~d 902 (1179)
.+++.++..+ |.|+-+|.++.-| +.+-|++....... ..+..-..+-..++ +...+-++....
T Consensus 24 ~~~~~a~si~------------p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~ 90 (1081)
T KOG0309|consen 24 DGGFNAVSIN------------PSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSN 90 (1081)
T ss_pred cCcccceeec------------cccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCc
Confidence 3456666665 7888899998877 55666653333222 22221122222344 333444444455
Q ss_pred CcEEEEECCC---CeEEEEeecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCe-EEEEeccCCCcEEEEEEcCCC
Q 001039 903 QSVLVWDKQT---SQLLEELKGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDT-CVATVGRCSSAVLCMEYDDST 976 (1179)
Q Consensus 903 g~I~iwd~~t---~~~~~~~~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~~~~v~~l~~sp~~ 976 (1179)
..-.+|++.. ......+.+|...|+.+.|. ..+.+++++.|..+..||+++-. .+............++|+-..
T Consensus 91 qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~ 170 (1081)
T KOG0309|consen 91 QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD 170 (1081)
T ss_pred chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccC
Confidence 5667898753 23445678999999999998 46789999999999999998754 455555555667788998755
Q ss_pred CEEEEEeCCCeEEEEeCCCC-ceeEEeecCCCCeEEEEEcC---CEEEEEeCCCcEEEEEccCCeeeE-EeecCCcCEEE
Q 001039 977 GILAAGGRDAVANIWDIRAG-RQMHKFLGHTKWIRSIRMDR---DTVITGSDDWTARMWSISRGTCDA-VLACHAGPVQC 1051 (1179)
Q Consensus 977 ~~l~sgs~dg~I~iwD~~~~-~~~~~~~~~~~~I~sl~~~~---~~l~sgs~dg~I~iwd~~~~~~~~-~~~~h~~~V~~ 1051 (1179)
..+.+.+....|.+||.+.| .++..+++|...|.++.++. ..+.+.+.||+|+.||..+..... .......+|+.
T Consensus 171 p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~ 250 (1081)
T KOG0309|consen 171 PNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWR 250 (1081)
T ss_pred cchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCccee
Confidence 55555667788999999876 56778889999999998854 478999999999999987653322 12234556666
Q ss_pred EEEecCCC
Q 001039 1052 VEYSSSDR 1059 (1179)
Q Consensus 1052 l~~spdg~ 1059 (1179)
-.+.|-|.
T Consensus 251 ~r~~Pfg~ 258 (1081)
T KOG0309|consen 251 GRYLPFGE 258 (1081)
T ss_pred ccccccCc
Confidence 66666443
No 285
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=1.8e-07 Score=108.97 Aligned_cols=326 Identities=12% Similarity=0.157 Sum_probs=209.4
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE------------ecC--CCEEEEEeCCCcEEEEECCCCeE
Q 001039 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI------------NSD--RGKVVSGSDDQSVLVWDKQTSQL 915 (1179)
Q Consensus 850 d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~------------s~d--~~~l~sgs~dg~I~iwd~~t~~~ 915 (1179)
.+.++|-|+. ..|.+-|.. ..+.++.+.-|...|+.+ ++. .-.|+++...|.|.+||...+..
T Consensus 25 ~~GLiAygsh-slV~VVDs~--s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~ 101 (1062)
T KOG1912|consen 25 PSGLIAYGSH-SLVSVVDSR--SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV 101 (1062)
T ss_pred ccceEEEecC-ceEEEEehh--hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh
Confidence 4667887774 468888844 667778888899888864 212 23577788889999999999998
Q ss_pred EEEeecCCCcEEEEEEe---C-C-CEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcC-CCCEEEEEeCCCeEE
Q 001039 916 LEELKGHDAQVSCVRML---S-G-ERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDD-STGILAAGGRDAVAN 989 (1179)
Q Consensus 916 ~~~~~~h~~~V~~l~~s---~-~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp-~~~~l~sgs~dg~I~ 989 (1179)
+..+..|.+++..++|- + . +.+++-....++.+|+..+|+.............|+.++| |.+.+..-+..|.+.
T Consensus 102 ~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl 181 (1062)
T KOG1912|consen 102 INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVL 181 (1062)
T ss_pred hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEE
Confidence 88899999999999996 2 2 5677777889999999999999988877777888899999 666677777778777
Q ss_pred EEeCCC-------CceeEEeecCCC------------Ce-------------EEEEEcCC--EEEEEeCCCcEEEEEccC
Q 001039 990 IWDIRA-------GRQMHKFLGHTK------------WI-------------RSIRMDRD--TVITGSDDWTARMWSISR 1035 (1179)
Q Consensus 990 iwD~~~-------~~~~~~~~~~~~------------~I-------------~sl~~~~~--~l~sgs~dg~I~iwd~~~ 1035 (1179)
+-+.-. |+..+.-..|.. .+ ..++|++. .++-......+.++|++-
T Consensus 182 ~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~ 261 (1062)
T KOG1912|consen 182 SCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEY 261 (1062)
T ss_pred EEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchh
Confidence 766432 222221112211 00 11233332 233344567899999998
Q ss_pred CeeeEEeecCCcCEEEEEEecCC--CEEEEEeCCCcEEEEEcCCC----------------CcceEEEeecccCceEEEE
Q 001039 1036 GTCDAVLACHAGPVQCVEYSSSD--RGIITGSSDGLLRFWENDDA----------------GGIKCVKNVTIHSSAILSI 1097 (1179)
Q Consensus 1036 ~~~~~~~~~h~~~V~~l~~spdg--~~l~sgs~Dg~I~iwd~~~~----------------~~~~~~~~~~~h~~~i~si 1097 (1179)
..++....-..+.+.-+.+-|++ ..|.++..||.+.+|-.+.. .+..++.........+...
T Consensus 262 ~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~ 341 (1062)
T KOG1912|consen 262 ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGAS 341 (1062)
T ss_pred hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeec
Confidence 88888877666666667777765 45899999999999976541 1122222222111111111
Q ss_pred ecC-CCEEEEEECCCcEEEEeCCCCCcCcccCCC------------Cccc----cceeeeecCCCcccEEEEEEcC----
Q 001039 1098 NAG-DHWLGIGAADNSMSLFHRPQERLGGFSGTG------------SKMS----GWQLYRTPQKTVAVVRCIASDL---- 1156 (1179)
Q Consensus 1098 s~d-g~~lasgs~Dg~I~iwd~~~~~~~~~~~~g------------~~~~----~~~~~~~~~~h~~~V~~v~fsp---- 1156 (1179)
.|. .+.++.--.+|.+.+|.+.+++...-...+ .... ..--+....+|....+++...|
T Consensus 342 cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~ 421 (1062)
T KOG1912|consen 342 CPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPEL 421 (1062)
T ss_pred CCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCccc
Confidence 233 444555556788889988755431111110 0000 0000111235665555555443
Q ss_pred -------CC-------CEEEEEeCCCcEEEEECCCC
Q 001039 1157 -------ER-------KRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1157 -------dg-------~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
-| .++|.|...|+|.+.|+.||
T Consensus 422 t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~ 457 (1062)
T KOG1912|consen 422 TKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN 457 (1062)
T ss_pred ceeecCCCCCccceeeeeEEeecCCceEEEEEecch
Confidence 22 25889999999999999986
No 286
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=2.2e-07 Score=111.46 Aligned_cols=218 Identities=15% Similarity=0.092 Sum_probs=134.5
Q ss_pred EEEecccCceEEEEeecccceeccccccCCCCEEEEEeC-CC--cEEEEcCCCCCceeEEEeccccccEEEEecCCCEEE
Q 001039 821 RIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGST-DC--LVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVV 897 (1179)
Q Consensus 821 ~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~-Dg--~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~ 897 (1179)
+.+..+...+.+..|+ |||+.|+..+. ++ .|++||+.......+....++.. -..++|||+.|+
T Consensus 211 ~~l~~~~~~~~~p~wS------------PDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La 277 (448)
T PRK04792 211 QMLLRSPEPLMSPAWS------------PDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLA 277 (448)
T ss_pred eEeecCCCcccCceEC------------CCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEE
Confidence 4555667788888887 89999887654 33 58888876333333333333322 236899999887
Q ss_pred E-EeCCCc--EEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEc-CC--eEEEEeCCCCeEEEEeccCCCcEEEE
Q 001039 898 S-GSDDQS--VLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASH-DG--TVKMWDVRTDTCVATVGRCSSAVLCM 970 (1179)
Q Consensus 898 s-gs~dg~--I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~-dg--~I~iwd~~~~~~~~~~~~~~~~v~~l 970 (1179)
. .+.+|. |.+||+.+++.. .+..+........|+ +++.++..+. +| .|.++|+.+++..... .........
T Consensus 278 ~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~ 355 (448)
T PRK04792 278 LVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGG 355 (448)
T ss_pred EEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCe
Confidence 5 455664 788898877653 444455556778888 6777665543 33 4677788777654332 222223457
Q ss_pred EEcCCCCEEEEEeCC-C--eEEEEeCCCCceeEEeecCCCCeEEEEE--cCCEEEEEe-CCCc--EEEEEccCCeeeEEe
Q 001039 971 EYDDSTGILAAGGRD-A--VANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGS-DDWT--ARMWSISRGTCDAVL 1042 (1179)
Q Consensus 971 ~~sp~~~~l~sgs~d-g--~I~iwD~~~~~~~~~~~~~~~~I~sl~~--~~~~l~sgs-~dg~--I~iwd~~~~~~~~~~ 1042 (1179)
+|+|+|++++..+.+ + .|.++|+.+++.. .+... .......| +++.++..+ .+|. +.+++. +|.....+
T Consensus 356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l 432 (448)
T PRK04792 356 SITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARL 432 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEEC
Confidence 899999998876543 3 5667888877643 22222 11122345 455555444 4443 677776 56666666
Q ss_pred ecCCcCEEEEEEec
Q 001039 1043 ACHAGPVQCVEYSS 1056 (1179)
Q Consensus 1043 ~~h~~~V~~l~~sp 1056 (1179)
..+.+.+...+|+|
T Consensus 433 ~~~~g~~~~p~Wsp 446 (448)
T PRK04792 433 PAGQGEVKSPAWSP 446 (448)
T ss_pred cCCCCCcCCCccCC
Confidence 66666777778876
No 287
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.91 E-value=2.4e-07 Score=110.83 Aligned_cols=217 Identities=16% Similarity=0.119 Sum_probs=133.2
Q ss_pred eEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCC---CcEEEEcCCCCCceeEEEeccccccEEEEecCCCEE
Q 001039 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTD---CLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKV 896 (1179)
Q Consensus 820 ~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~D---g~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l 896 (1179)
.+.+..+.+.+.+.+|+ |||++|+.++.+ ..|++||+............+... ..+++|||+.|
T Consensus 182 ~~~l~~~~~~~~~p~~S------------pdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l 248 (417)
T TIGR02800 182 PQTITRSREPILSPAWS------------PDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKL 248 (417)
T ss_pred CEEeecCCCceecccCC------------CCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEE
Confidence 34555677778888887 899999987654 479999987332322222222221 23689999987
Q ss_pred EEE-eCCC--cEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcC-C--eEEEEeCCCCeEEEEeccCCCcEEE
Q 001039 897 VSG-SDDQ--SVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHD-G--TVKMWDVRTDTCVATVGRCSSAVLC 969 (1179)
Q Consensus 897 ~sg-s~dg--~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~d-g--~I~iwd~~~~~~~~~~~~~~~~v~~ 969 (1179)
+.. +.++ .|++||+.+++.. .+..+........|+ +++.++.++.. + .|.++|+.+++.. .+..+...+..
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~ 326 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNAS 326 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccC
Confidence 654 4443 5889999877653 344444445566787 67777766543 3 5888888877643 33334556678
Q ss_pred EEEcCCCCEEEEEeCCC---eEEEEeCCCCceeEEeecCCCCeEEEEE--cCCEEEEEeCCC---cEEEEEccCCeeeEE
Q 001039 970 MEYDDSTGILAAGGRDA---VANIWDIRAGRQMHKFLGHTKWIRSIRM--DRDTVITGSDDW---TARMWSISRGTCDAV 1041 (1179)
Q Consensus 970 l~~sp~~~~l~sgs~dg---~I~iwD~~~~~~~~~~~~~~~~I~sl~~--~~~~l~sgs~dg---~I~iwd~~~~~~~~~ 1041 (1179)
..|+|+|++++.++.++ .|.+||+.++... .+.... ......| +++.++..+.++ .+.+.+. ++.....
T Consensus 327 ~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~-~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~ 403 (417)
T TIGR02800 327 PSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTG-LDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRAR 403 (417)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCC-CCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeE
Confidence 89999999999888776 8999999876442 232221 2233344 555666665543 3445453 3444444
Q ss_pred eecCCcCEEEEEE
Q 001039 1042 LACHAGPVQCVEY 1054 (1179)
Q Consensus 1042 ~~~h~~~V~~l~~ 1054 (1179)
+..+.+.+...+|
T Consensus 404 ~~~~~g~~~~~~w 416 (417)
T TIGR02800 404 LPLGNGDVREPAW 416 (417)
T ss_pred CCCCCCCcCCCCC
Confidence 4433444444443
No 288
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=4.2e-07 Score=102.52 Aligned_cols=309 Identities=13% Similarity=0.158 Sum_probs=191.0
Q ss_pred EEEEccCCCceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCC
Q 001039 773 QSMFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDA 851 (1179)
Q Consensus 773 ~~~fSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~ 851 (1179)
-+.|||.|+||+|--.. |.+|-=.+-. .++.+ .|.+ |.-+.|| |..
T Consensus 215 yv~wSP~GTYL~t~Hk~GI~lWGG~~f~-------------------r~~RF-~Hp~-Vq~idfS------------P~E 261 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQGIALWGGESFD-------------------RIQRF-YHPG-VQFIDFS------------PNE 261 (698)
T ss_pred eEEecCCceEEEEEeccceeeecCccHH-------------------HHHhc-cCCC-ceeeecC------------Ccc
Confidence 45999999999998887 9999533221 22333 2443 5667776 899
Q ss_pred CEEEEEeC-----------CCcEEEEcCCCCCceeEEEecc--ccc---cEEEEecCCCEEEEEeCCCcEEEEECCCCeE
Q 001039 852 GFFISGST-----------DCLVKIWDPSLRGSELRATLKG--HTR---TVRAINSDRGKVVSGSDDQSVLVWDKQTSQL 915 (1179)
Q Consensus 852 ~~Lasgs~-----------Dg~I~lWd~~~~~~~~~~~l~~--h~~---~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~ 915 (1179)
+||+|-|. ...++|||+. ++.+...+.. ... ++..+|.|++++|.-..+ .|.|++..+..+
T Consensus 262 kYLVT~s~~p~~~~~~d~e~~~l~IWDI~--tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~l 338 (698)
T KOG2314|consen 262 KYLVTYSPEPIIVEEDDNEGQQLIIWDIA--TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFML 338 (698)
T ss_pred ceEEEecCCccccCcccCCCceEEEEEcc--ccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceee
Confidence 99998753 2469999987 4444444444 222 344679999999987774 699999876544
Q ss_pred EEEeecCCCcEEEEEEeCCCEEEE-EEc-----CCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEe------
Q 001039 916 LEELKGHDAQVSCVRMLSGERVLT-ASH-----DGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGG------ 983 (1179)
Q Consensus 916 ~~~~~~h~~~V~~l~~s~~~~l~s-gs~-----dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs------ 983 (1179)
+..-.-.-..|....|++...+++ -+. -..+.+..+.+++.+++..-++-.=..+.|-.+|.+|+.--
T Consensus 339 ld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~ 418 (698)
T KOG2314|consen 339 LDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKS 418 (698)
T ss_pred ecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccc
Confidence 433223345677788886544332 211 13466677777777666554444444566777777776532
Q ss_pred ----CCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEEEe---CCCcEEEEEccC-C---eeeEEeecCCcCEE
Q 001039 984 ----RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGS---DDWTARMWSISR-G---TCDAVLACHAGPVQ 1050 (1179)
Q Consensus 984 ----~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs---~dg~I~iwd~~~-~---~~~~~~~~h~~~V~ 1050 (1179)
.-..+.|+.++.....-....-...|..++|.| +.+++-+ ...++.+|.+++ . ..+..+. ....+
T Consensus 419 ~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N 496 (698)
T KOG2314|consen 419 KVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFAN 496 (698)
T ss_pred cccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccc
Confidence 112455666655443322234456777888854 4443332 245788888773 2 2233333 35678
Q ss_pred EEEEecCCCEEEEEe---CCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEEC------CCcEEEEeCCC
Q 001039 1051 CVEYSSSDRGIITGS---SDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAA------DNSMSLFHRPQ 1120 (1179)
Q Consensus 1051 ~l~~spdg~~l~sgs---~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~------Dg~I~iwd~~~ 1120 (1179)
.+.|+|.|++++.+. ..|.+.++|++... .+.+.........-..+.|.|+++++++. |..-++|+..+
T Consensus 497 ~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~-~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 497 TVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD-LKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred eEEEcCCCcEEEEEEecccccceEEEecchhh-hhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 899999999988764 57889999988511 22222221112222456899999999875 45567777754
No 289
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.87 E-value=8.7e-06 Score=92.38 Aligned_cols=230 Identities=13% Similarity=0.108 Sum_probs=143.3
Q ss_pred CCCCEEEEEeC----------CCcEEEEcCCCCCceeEEEecc---------ccccEEEEecCCCEEEEEe-C-CCcEEE
Q 001039 849 EDAGFFISGST----------DCLVKIWDPSLRGSELRATLKG---------HTRTVRAINSDRGKVVSGS-D-DQSVLV 907 (1179)
Q Consensus 849 ~d~~~Lasgs~----------Dg~I~lWd~~~~~~~~~~~l~~---------h~~~v~~~s~d~~~l~sgs-~-dg~I~i 907 (1179)
||++.++.+.. +..|.+||.. +.+....+.- -.....++++||++++... . +..|.+
T Consensus 55 pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~--t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 55 SDGSFFAHASTVYSRIARGKRTDYVEVIDPQ--THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred CCCCEEEEEeccccccccCCCCCEEEEEECc--cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 89998877665 7899999976 4444444442 1222557899999999876 3 689999
Q ss_pred EECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCC-CeEE-EE---eccCCCcEEE-EEEcC-CCCEEE
Q 001039 908 WDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRT-DTCV-AT---VGRCSSAVLC-MEYDD-STGILA 980 (1179)
Q Consensus 908 wd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~-~~~~-~~---~~~~~~~v~~-l~~sp-~~~~l~ 980 (1179)
.|+.+++.+..+.... ...-...++... .+-+.||......+.+ |+.. .. +......+.. -.+.+ +|+++.
T Consensus 133 vD~~~~kvv~ei~vp~-~~~vy~t~e~~~-~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~ 210 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD-CYHIFPTANDTF-FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVW 210 (352)
T ss_pred EECCCCcEEEEEeCCC-CcEEEEecCCcc-EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEE
Confidence 9999999999887533 222222222222 2334455544433322 2211 11 1110011000 03455 888887
Q ss_pred EEeCCCeEEEEeCCCC-----ceeEEeec-------CCCCeEEEEEc--CCEEEEEe----------CCCcEEEEEccCC
Q 001039 981 AGGRDAVANIWDIRAG-----RQMHKFLG-------HTKWIRSIRMD--RDTVITGS----------DDWTARMWSISRG 1036 (1179)
Q Consensus 981 sgs~dg~I~iwD~~~~-----~~~~~~~~-------~~~~I~sl~~~--~~~l~sgs----------~dg~I~iwd~~~~ 1036 (1179)
+... |.|.+.|+... +....+.. ..+...-++++ ++.+++.. ..+.|.++|..++
T Consensus 211 vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~ 289 (352)
T TIGR02658 211 PTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG 289 (352)
T ss_pred EecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC
Confidence 7766 99999996443 22222211 12233336664 45555532 2257999999999
Q ss_pred eeeEEeecCCcCEEEEEEecCCC-EEEEEe-CCCcEEEEEcCCCCcceEEEee
Q 001039 1037 TCDAVLACHAGPVQCVEYSSSDR-GIITGS-SDGLLRFWENDDAGGIKCVKNV 1087 (1179)
Q Consensus 1037 ~~~~~~~~h~~~V~~l~~spdg~-~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~ 1087 (1179)
+.+..+.. ...+..++++||++ +|++.. .++.|.+.|..+ .+.++++
T Consensus 290 kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t---~k~i~~i 338 (352)
T TIGR02658 290 KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAET---GKELSSV 338 (352)
T ss_pred eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcC---CeEEeee
Confidence 99998874 45889999999999 777666 578899999988 4445444
No 290
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=6.9e-07 Score=107.11 Aligned_cols=230 Identities=9% Similarity=0.035 Sum_probs=139.3
Q ss_pred cEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEc-C--CeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEE
Q 001039 904 SVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASH-D--GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGIL 979 (1179)
Q Consensus 904 ~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~-d--g~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l 979 (1179)
.+.++|.+.... +.+..+...+.+..|+ +|+.++..+. + ..|.+||+.+++.... ....+.....+|+|||+.+
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEE
Confidence 677778765433 4455566788889999 6777776543 3 3588999988865332 2223344578999999988
Q ss_pred EE-EeCCC--eEEEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEEEe-CCC--cEEEEEccCCeeeEEeecCCcCEEE
Q 001039 980 AA-GGRDA--VANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVITGS-DDW--TARMWSISRGTCDAVLACHAGPVQC 1051 (1179)
Q Consensus 980 ~s-gs~dg--~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~sgs-~dg--~I~iwd~~~~~~~~~~~~h~~~V~~ 1051 (1179)
+. .+.+| .|+++|+.+++. ..+..+.......+|++ +.++..+ .+| .|.++|+.+++.... .........
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~ 354 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLG 354 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcC
Confidence 75 45556 488889887754 34444545556677754 4555444 344 466677777765432 222233345
Q ss_pred EEEecCCCEEEEEeC-CCc--EEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECC-Cc--EEEEeCCCCCcCc
Q 001039 1052 VEYSSSDRGIITGSS-DGL--LRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAAD-NS--MSLFHRPQERLGG 1125 (1179)
Q Consensus 1052 l~~spdg~~l~sgs~-Dg~--I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~D-g~--I~iwd~~~~~~~~ 1125 (1179)
.+|+|||++++..+. ++. |.++|+.++. ...+.. .....--+++|||+.|+..+.+ |. +++++....
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~-~~~lt~--~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~---- 427 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGA-MQVLTS--TRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR---- 427 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCC-eEEccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----
Confidence 789999999887654 343 4556766633 222221 1111123688999988876543 33 666666421
Q ss_pred ccCCCCccccceeeeecCCCcccEEEEEEcC
Q 001039 1126 FSGTGSKMSGWQLYRTPQKTVAVVRCIASDL 1156 (1179)
Q Consensus 1126 ~~~~g~~~~~~~~~~~~~~h~~~V~~v~fsp 1156 (1179)
....+..+.+.+...+|||
T Consensus 428 ------------~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 428 ------------FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ------------ceEECcCCCCCcCCCccCC
Confidence 2223334455677788887
No 291
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.86 E-value=1.6e-06 Score=94.99 Aligned_cols=213 Identities=16% Similarity=0.106 Sum_probs=145.7
Q ss_pred CCCcEEEEECCCCeEEEEeecC--CCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCE
Q 001039 901 DDQSVLVWDKQTSQLLEELKGH--DAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI 978 (1179)
Q Consensus 901 ~dg~I~iwd~~t~~~~~~~~~h--~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 978 (1179)
.+|+|..||..+|+.+...... .....+....+++.+++++.++.+..||..+|+.+....... .+.... ...+..
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAP-VVDGGR 78 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGE-EEETTE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-ccccee-eecccc
Confidence 3689999999999999988642 122232244467888888999999999999999988775422 211111 224555
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEe-ecCC-----CCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcC----
Q 001039 979 LAAGGRDAVANIWDIRAGRQMHKF-LGHT-----KWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGP---- 1048 (1179)
Q Consensus 979 l~sgs~dg~I~iwD~~~~~~~~~~-~~~~-----~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~---- 1048 (1179)
+++++.++.++.+|..+|+.+.+. .... .......+.++.++++..++.|..+|.++|+.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 677778889999999999998874 3321 123345567889999999999999999999998887764422
Q ss_pred ------EEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEE-EecCCCEEEEEECCCcEEEEeCCCC
Q 001039 1049 ------VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILS-INAGDHWLGIGAADNSMSLFHRPQE 1121 (1179)
Q Consensus 1049 ------V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~s-is~dg~~lasgs~Dg~I~iwd~~~~ 1121 (1179)
+.+-....++ .+..++.+|.+.-+|..+++ .+.... ...... ...++..+++++.++.|..||+.++
T Consensus 159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~---~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGE---KLWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTE---EEEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred eeeecccccceEEECC-EEEEEcCCCeEEEEECCCCC---EEEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence 1222222344 77777778864444998843 222222 222333 5678888888889999999999843
No 292
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.85 E-value=7e-08 Score=102.87 Aligned_cols=229 Identities=17% Similarity=0.313 Sum_probs=156.9
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCe-----EEEEeecCC------------CcEEEEEEe---CCCEEEEEEcCCeEEE
Q 001039 889 INSDRGKVVSGSDDQSVLVWDKQTSQ-----LLEELKGHD------------AQVSCVRML---SGERVLTASHDGTVKM 948 (1179)
Q Consensus 889 ~s~d~~~l~sgs~dg~I~iwd~~t~~-----~~~~~~~h~------------~~V~~l~~s---~~~~l~sgs~dg~I~i 948 (1179)
+...|.+|++|..+|.|.++.-.... ....++.|. ..|..+.|. +...++..+.|.+|++
T Consensus 33 f~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKl 112 (433)
T KOG1354|consen 33 FDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKL 112 (433)
T ss_pred eecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceee
Confidence 47889999999999999999643321 233444443 457788887 3556888999999999
Q ss_pred EeCCCCeE-----------------------------------EEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 001039 949 WDVRTDTC-----------------------------------VATV-GRCSSAVLCMEYDDSTGILAAGGRDAVANIWD 992 (1179)
Q Consensus 949 wd~~~~~~-----------------------------------~~~~-~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD 992 (1179)
|.+..... .+.+ ..|...|.++.++.|+..++++ .|-.|.+|+
T Consensus 113 WKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWn 191 (433)
T KOG1354|consen 113 WKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWN 191 (433)
T ss_pred eeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cceeeeecc
Confidence 98753211 1111 2466778999999999988876 478999999
Q ss_pred CCCCceeE---EeecC-----CCCeEEEEEcCC---EEEEEeCCCcEEEEEccCCeee----EE------------eecC
Q 001039 993 IRAGRQMH---KFLGH-----TKWIRSIRMDRD---TVITGSDDWTARMWSISRGTCD----AV------------LACH 1045 (1179)
Q Consensus 993 ~~~~~~~~---~~~~~-----~~~I~sl~~~~~---~l~sgs~dg~I~iwd~~~~~~~----~~------------~~~h 1045 (1179)
+.-...-. .++.+ ..-|++..|+|. .++-.+..|+|++-|++..... +. +..-
T Consensus 192 lei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffsei 271 (433)
T KOG1354|consen 192 LEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEI 271 (433)
T ss_pred ccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHH
Confidence 87443222 22222 235677778664 7888899999999999843211 11 1112
Q ss_pred CcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccC------------ceE-----EEEecCCCEEEEEE
Q 001039 1046 AGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHS------------SAI-----LSINAGDHWLGIGA 1108 (1179)
Q Consensus 1046 ~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~------------~~i-----~sis~dg~~lasgs 1108 (1179)
-..|..+.|+++|+++++-+. -+|++||+.... +.+.+.+.|. ..| .+++-++.++++|+
T Consensus 272 IsSISDvKFs~sGryilsRDy-ltvk~wD~nme~--~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGs 348 (433)
T KOG1354|consen 272 ISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEA--KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGS 348 (433)
T ss_pred hhhhhceEEccCCcEEEEecc-ceeEEEeccccC--CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEeccc
Confidence 246888999999999997643 579999996532 3333333332 222 44566777999999
Q ss_pred CCCcEEEEeCCCC
Q 001039 1109 ADNSMSLFHRPQE 1121 (1179)
Q Consensus 1109 ~Dg~I~iwd~~~~ 1121 (1179)
..+..++++...+
T Consensus 349 y~n~frvf~~~~g 361 (433)
T KOG1354|consen 349 YNNVFRVFNLARG 361 (433)
T ss_pred ccceEEEecCCCC
Confidence 9999999996543
No 293
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.85 E-value=4.5e-07 Score=107.82 Aligned_cols=219 Identities=10% Similarity=-0.004 Sum_probs=130.4
Q ss_pred cccCCcceEEEEEccCCCcee---eccCc----eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEee
Q 001039 764 ASGIGRSWVQSMFSREASSRS---HSFSR----VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCV 836 (1179)
Q Consensus 764 ~~gh~~~i~~~~fSpdg~~la---s~~~d----I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s 836 (1179)
+..+......-+|||||+.++ ++..+ |.+.++++++. +.+....+.....+||
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--------------------~~lt~~~g~~~~p~wS 239 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--------------------KKILALQGNQLMPTFS 239 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--------------------eEeecCCCCccceEEC
Confidence 333344556669999998532 22222 88888887652 1222234444556776
Q ss_pred cccceeccccccCCCCEEEEEeC-CC----cEEEEcCCCC-CceeEEEecccccc--EEEEecCCCEEEEEe-CCCcEEE
Q 001039 837 TKREVWDLVGDREDAGFFISGST-DC----LVKIWDPSLR-GSELRATLKGHTRT--VRAINSDRGKVVSGS-DDQSVLV 907 (1179)
Q Consensus 837 ~~~~~~~~~~~s~d~~~Lasgs~-Dg----~I~lWd~~~~-~~~~~~~l~~h~~~--v~~~s~d~~~l~sgs-~dg~I~i 907 (1179)
|||+.|+..+. +| .+..|++... .........++... -.+++|||+.|+..+ .+|...+
T Consensus 240 ------------PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~l 307 (428)
T PRK01029 240 ------------PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRI 307 (428)
T ss_pred ------------CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceE
Confidence 89998887653 23 3444675522 12222333222221 237899999888765 4665555
Q ss_pred E--ECCC-CeEEEEeecCCCcEEEEEEe-CCCEEEEEEcC---CeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEE
Q 001039 908 W--DKQT-SQLLEELKGHDAQVSCVRML-SGERVLTASHD---GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILA 980 (1179)
Q Consensus 908 w--d~~t-~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~ 980 (1179)
| ++.. +.....+..+...+....|+ +|+.++..+.+ ..|.+||+.+++..... .....+....|+|||+.|+
T Consensus 308 y~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~ 386 (428)
T PRK01029 308 YIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLV 386 (428)
T ss_pred EEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEE
Confidence 5 4432 23344454455567788899 67777766543 46999999988765443 3344567899999999887
Q ss_pred EEeC---CCeEEEEeCCCCceeEEeecCCCCeEEEEEcC
Q 001039 981 AGGR---DAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR 1016 (1179)
Q Consensus 981 sgs~---dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~ 1016 (1179)
.... .+.|.++|+.+++..... ...+.+...+|++
T Consensus 387 f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~ 424 (428)
T PRK01029 387 YSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGA 424 (428)
T ss_pred EEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecC
Confidence 5443 357888898877654333 3333444555543
No 294
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.85 E-value=2.2e-05 Score=100.84 Aligned_cols=280 Identities=15% Similarity=0.183 Sum_probs=175.5
Q ss_pred CCcceEEEEEccCCCce--eeccCceEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecc
Q 001039 767 IGRSWVQSMFSREASSR--SHSFSRVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDL 844 (1179)
Q Consensus 767 h~~~i~~~~fSpdg~~l--as~~~dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~ 844 (1179)
....|+.+.|-+|...+ +..++||.+...+..... ..+.....-.+.|.|++||
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~----------------~~~E~VG~vd~GI~a~~WS-------- 129 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE----------------DEIEIVGSVDSGILAASWS-------- 129 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC----------------ceeEEEEEEcCcEEEEEEC--------
Confidence 34789999999988754 455556555522211100 0233444567789999998
Q ss_pred ccccCCCCEEEEEeCCCcEEEEcCCC-------------CCcee--------EEEecc----------------------
Q 001039 845 VGDREDAGFFISGSTDCLVKIWDPSL-------------RGSEL--------RATLKG---------------------- 881 (1179)
Q Consensus 845 ~~~s~d~~~Lasgs~Dg~I~lWd~~~-------------~~~~~--------~~~l~~---------------------- 881 (1179)
||+..|+..+.+|+|.+-+-+. +..+. ...++|
T Consensus 130 ----PD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~ 205 (928)
T PF04762_consen 130 ----PDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGK 205 (928)
T ss_pred ----CCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCc
Confidence 8999999998888887754210 00000 001111
Q ss_pred --c-cccE-EEEecCCCEEEEEeC------CCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEc---CCeEE
Q 001039 882 --H-TRTV-RAINSDRGKVVSGSD------DQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASH---DGTVK 947 (1179)
Q Consensus 882 --h-~~~v-~~~s~d~~~l~sgs~------dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~---dg~I~ 947 (1179)
+ ...+ .+|..||.++|+.+. -..++||+-+ |+...+-..-.+--.+++|. .|+.+++... ...|.
T Consensus 206 ~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~Vv 284 (928)
T PF04762_consen 206 LSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVV 284 (928)
T ss_pred cccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEE
Confidence 0 1111 256689999998764 2579999955 77655555444445677888 4676766553 35677
Q ss_pred EEeCCCCeEEEEe----ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee--EEee-cCCCCeEEEEEcCC---
Q 001039 948 MWDVRTDTCVATV----GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQM--HKFL-GHTKWIRSIRMDRD--- 1017 (1179)
Q Consensus 948 iwd~~~~~~~~~~----~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~--~~~~-~~~~~I~sl~~~~~--- 1017 (1179)
+|. ++|-.-..+ ......|..+.|++++..||....|. |.+|-..+..-- +.+. .....+..+.|++.
T Consensus 285 FfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~ 362 (928)
T PF04762_consen 285 FFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPL 362 (928)
T ss_pred EEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCC
Confidence 777 445433333 23456899999999999999987655 999998876432 2232 22234455888654
Q ss_pred EEEEEeCCCcEEEEEc----cCCe--------eeEEeec-----------------------CCcCEEEEEEecCCCEEE
Q 001039 1018 TVITGSDDWTARMWSI----SRGT--------CDAVLAC-----------------------HAGPVQCVEYSSSDRGII 1062 (1179)
Q Consensus 1018 ~l~sgs~dg~I~iwd~----~~~~--------~~~~~~~-----------------------h~~~V~~l~~spdg~~l~ 1062 (1179)
.+...+.+|.+..++. ..+. .+..+.| -..+|.+++|++++..++
T Consensus 363 ~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~a 442 (928)
T PF04762_consen 363 RLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFA 442 (928)
T ss_pred EEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEE
Confidence 6777777677655443 2110 1111111 356799999999998899
Q ss_pred EEeCCCcEEEEEcCC
Q 001039 1063 TGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1063 sgs~Dg~I~iwd~~~ 1077 (1179)
+-..||.+.+|....
T Consensus 443 vl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 443 VLTSDGSLSIYEWDL 457 (928)
T ss_pred EEECCCCEEEEEecC
Confidence 999999999998654
No 295
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.82 E-value=1e-06 Score=96.45 Aligned_cols=214 Identities=17% Similarity=0.125 Sum_probs=144.8
Q ss_pred CCcEEEEcCCCCCceeEEEecc---ccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCE
Q 001039 860 DCLVKIWDPSLRGSELRATLKG---HTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGER 936 (1179)
Q Consensus 860 Dg~I~lWd~~~~~~~~~~~l~~---h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~ 936 (1179)
+|+|..||.. +.+.+....- ....+.....+++.+++++.++.+..||..+|+.+....... .+.......++.
T Consensus 2 ~g~l~~~d~~--tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPR--TGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-PISGAPVVDGGR 78 (238)
T ss_dssp TSEEEEEETT--TTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS-CGGSGEEEETTE
T ss_pred CCEEEEEECC--CCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-cccceeeecccc
Confidence 6888899975 3333333321 233332234577888888999999999999999998887522 221112335777
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEEe-ccCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCC----
Q 001039 937 VLTASHDGTVKMWDVRTDTCVATV-GRCS---SAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKW---- 1008 (1179)
Q Consensus 937 l~sgs~dg~I~iwd~~~~~~~~~~-~~~~---~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~---- 1008 (1179)
+++++.++.+..+|..+|+.+... .... ..........++..++++..++.|..+|.++|+.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 888888999999999999998884 3221 11222233334778888888999999999999998887664422
Q ss_pred -------eEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 001039 1009 -------IRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAG 1079 (1179)
Q Consensus 1009 -------I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~ 1079 (1179)
...+.+.++.++.++.+|.+..+|+.+++.+.... ...+.. ....++..++.++.++.+..||..+++
T Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 159 ISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred eeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 12334455588888888864444999998665333 222222 245678888888899999999999943
No 296
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.82 E-value=1.7e-05 Score=101.95 Aligned_cols=268 Identities=13% Similarity=0.161 Sum_probs=161.7
Q ss_pred cCCCCEEEEEeC---C---CcEEEEcCCCCCceeEEEeccc--cccEEEEecCCCEEEEEeC---CCcEEEEECCCCeEE
Q 001039 848 REDAGFFISGST---D---CLVKIWDPSLRGSELRATLKGH--TRTVRAINSDRGKVVSGSD---DQSVLVWDKQTSQLL 916 (1179)
Q Consensus 848 s~d~~~Lasgs~---D---g~I~lWd~~~~~~~~~~~l~~h--~~~v~~~s~d~~~l~sgs~---dg~I~iwd~~t~~~~ 916 (1179)
..||.++|+.+. + ..+|||+-+ +.+..+...- -....+|.|.|+++|+... ...|.+|. ++|-..
T Consensus 218 RGDG~yFAVss~~~~~~~~R~iRVy~Re---G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrh 293 (928)
T PF04762_consen 218 RGDGEYFAVSSVEPETGSRRVIRVYSRE---GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRH 293 (928)
T ss_pred CCCCcEEEEEEEEcCCCceeEEEEECCC---ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEe
Confidence 399999998875 3 479999943 3333332211 1223367899999998865 34566666 445444
Q ss_pred EEee----cCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEE--EEec-cCCCcEEEEEEcCC-CCEEEEEeCCCe
Q 001039 917 EELK----GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCV--ATVG-RCSSAVLCMEYDDS-TGILAAGGRDAV 987 (1179)
Q Consensus 917 ~~~~----~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~--~~~~-~~~~~v~~l~~sp~-~~~l~sgs~dg~ 987 (1179)
..|. .....|..+.|+ +++.|+....|. |.+|-..+.... +.+. .....+..+.|+|. ...|...+.+|.
T Consensus 294 geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~ 372 (928)
T PF04762_consen 294 GEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQ 372 (928)
T ss_pred eeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCc
Confidence 4433 346789999999 677777766554 999998776532 2222 22334555999994 455666666666
Q ss_pred EEEEeCC----CCc--------eeEEee-----------------------cCCCCeEEEEEcCC--EEEEEeCCCcEEE
Q 001039 988 ANIWDIR----AGR--------QMHKFL-----------------------GHTKWIRSIRMDRD--TVITGSDDWTARM 1030 (1179)
Q Consensus 988 I~iwD~~----~~~--------~~~~~~-----------------------~~~~~I~sl~~~~~--~l~sgs~dg~I~i 1030 (1179)
+..++.. .+. .+..+. .-...|.++++.++ .+++-..||.|.+
T Consensus 373 ~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~ 452 (928)
T PF04762_consen 373 YEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSI 452 (928)
T ss_pred EEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEE
Confidence 6554432 110 111111 12457888888554 5999999999999
Q ss_pred EEccCCeee--------EEee----------cCCcCEEEEEEecCCCEEEEEeCC---CcEEEEEcCCCCcceEEEeecc
Q 001039 1031 WSISRGTCD--------AVLA----------CHAGPVQCVEYSSSDRGIITGSSD---GLLRFWENDDAGGIKCVKNVTI 1089 (1179)
Q Consensus 1031 wd~~~~~~~--------~~~~----------~h~~~V~~l~~spdg~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~ 1089 (1179)
|........ ..+. .....+..++|..+...++..+.+ +.+.+++...............
T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 532 (928)
T PF04762_consen 453 YEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTE 532 (928)
T ss_pred EEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEec
Confidence 985433211 1111 123457888998888777666654 6788888855333333333333
Q ss_pred cCceEEEEe--cCCCEEEEEECCCcEEEEeCCC
Q 001039 1090 HSSAILSIN--AGDHWLGIGAADNSMSLFHRPQ 1120 (1179)
Q Consensus 1090 h~~~i~sis--~dg~~lasgs~Dg~I~iwd~~~ 1120 (1179)
-...+..++ ++...++.-..||.+...+...
T Consensus 533 ~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~ 565 (928)
T PF04762_consen 533 VDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDG 565 (928)
T ss_pred cCceEEEEeeCCCCcEEEEEECCCEEEEeecCC
Confidence 344444443 3333366777888888766553
No 297
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.82 E-value=1.7e-06 Score=113.13 Aligned_cols=245 Identities=10% Similarity=0.138 Sum_probs=155.0
Q ss_pred EEEEe--CCCEEEEEEcCCeEEEEeCCCCeEEEEecc-C-------------CCcEEEEEEcCCCCEEEEEe-CCCeEEE
Q 001039 928 CVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGR-C-------------SSAVLCMEYDDSTGILAAGG-RDAVANI 990 (1179)
Q Consensus 928 ~l~~s--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~-------------~~~v~~l~~sp~~~~l~sgs-~dg~I~i 990 (1179)
.+++. ++..+++-+.++.|.+||.. +..+..+.. . -.....++++++++.++++. .++.|+.
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 45554 34566666677888888865 444433322 0 12357899999888766655 4578999
Q ss_pred EeCCCCceeEEeecC-----------------CCCeEEEEEcC---CEEEEEeCCCcEEEEEccCCeeeEEeecC-----
Q 001039 991 WDIRAGRQMHKFLGH-----------------TKWIRSIRMDR---DTVITGSDDWTARMWSISRGTCDAVLACH----- 1045 (1179)
Q Consensus 991 wD~~~~~~~~~~~~~-----------------~~~I~sl~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~h----- 1045 (1179)
+|..++. +.++.+. -...+.+++++ ..+++.+.++.|++||..++.... +.+.
T Consensus 651 id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~ 728 (1057)
T PLN02919 651 IDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERN 728 (1057)
T ss_pred EecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCcccc
Confidence 9987764 3333211 11235677764 366777788999999988775432 2111
Q ss_pred ----------CcCEEEEEEecCCCEEE-EEeCCCcEEEEEcCCCCcceEEE-----------eeccc----------Cce
Q 001039 1046 ----------AGPVQCVEYSSSDRGII-TGSSDGLLRFWENDDAGGIKCVK-----------NVTIH----------SSA 1093 (1179)
Q Consensus 1046 ----------~~~V~~l~~spdg~~l~-sgs~Dg~I~iwd~~~~~~~~~~~-----------~~~~h----------~~~ 1093 (1179)
-...+.++++|+|+.|+ +.+.++.|++||+.+++. ..+. .+... ...
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12456799999998554 555678999999987431 1111 00000 011
Q ss_pred EEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 001039 1094 ILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLW 1173 (1179)
Q Consensus 1094 i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vW 1173 (1179)
-.+++++|+++++.+.++.|++||..+..+..+.++|... +.--....++-.....++++++|+++++.+.+++|++|
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G--~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAG--FKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcC--CCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 2455788998888889999999999866554443333210 00000112233457899999999999999999999999
Q ss_pred ECCCC
Q 001039 1174 EATIN 1178 (1179)
Q Consensus 1174 dv~tg 1178 (1179)
|+.++
T Consensus 886 d~~~~ 890 (1057)
T PLN02919 886 DLNKG 890 (1057)
T ss_pred ECCCC
Confidence 99886
No 298
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.73 E-value=1.9e-05 Score=81.78 Aligned_cols=310 Identities=15% Similarity=0.120 Sum_probs=165.0
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCC-CcEEEE
Q 001039 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHD-AQVSCV 929 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~-~~V~~l 929 (1179)
..+++.|+..+.+.--|...++... ...-+..-...++- -|++++.|+..|.+++.+.++|...+.+...+ -.+...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~W-e~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIW-EAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEe-ehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 4566777778888877765322222 22222222222222 57789999999999999999998877765322 122222
Q ss_pred EEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec--CCC
Q 001039 930 RMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG--HTK 1007 (1179)
Q Consensus 930 ~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~--~~~ 1007 (1179)
.-.++..+..|+.|++....|.++..++...+...+...+-+..+....|..+...|.+.-...+++.. .++-. ..+
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~-~~~w~~~~~~ 179 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSS-TEFWAATRFG 179 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCc-ceehhhhcCC
Confidence 223688999999999999999999999988766665555666677444455555566665555444311 11111 112
Q ss_pred CeEEE-EEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEE-EEe-cCCCEEEEEeCCCc--------EEEEEcC
Q 001039 1008 WIRSI-RMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCV-EYS-SSDRGIITGSSDGL--------LRFWEND 1076 (1179)
Q Consensus 1008 ~I~sl-~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l-~~s-pdg~~l~sgs~Dg~--------I~iwd~~ 1076 (1179)
++.+- ..-+..+..+.-||.+.-+| ..|+.+.... ..++|..- +-+ |..+.+..+..+-. -.+|..+
T Consensus 180 PiF~splcv~~sv~i~~VdG~l~~f~-~sG~qvwr~~-t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~ 257 (354)
T KOG4649|consen 180 PIFASPLCVGSSVIITTVDGVLTSFD-ESGRQVWRPA-TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQ 257 (354)
T ss_pred ccccCceeccceEEEEEeccEEEEEc-CCCcEEEeec-CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEec
Confidence 22221 11223444455566666666 4555554433 22332210 111 33333333333221 2356655
Q ss_pred CCCcceEEEeecccCceEEEE-ec---CCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEE
Q 001039 1077 DAGGIKCVKNVTIHSSAILSI-NA---GDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCI 1152 (1179)
Q Consensus 1077 ~~~~~~~~~~~~~h~~~i~si-s~---dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v 1152 (1179)
++......... .--..+ ++ ..+++..++.||.+.|.-+... +......+..+....... +. +.|
T Consensus 258 ~g~t~~vy~~p----~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~s-l~~~~s~~g~lq~~~~~e-l~---~eI--- 325 (354)
T KOG4649|consen 258 SGTTLHVYLSP----KLRFDLHSPGISYPKLLRRSSGDGKVMILMTSKS-LAEISSNGGELQNLEAIE-LS---NEI--- 325 (354)
T ss_pred CCcEEEEEeCc----ccceeccCCCCcchhhhhhhcCCCcEEEEEeccc-ccccccCCCccceEEEee-cC---ccc---
Confidence 53111111100 001111 12 2567888999999999865432 222333332222111110 00 011
Q ss_pred EEcC---CCCEEEEEeCCCcEEEEECCCC
Q 001039 1153 ASDL---ERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1153 ~fsp---dg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
--|| + .+|+.|+.|..++-||+.++
T Consensus 326 FsSPvii~-grl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 326 FSSPVIID-GRLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred ccCCeEEc-cEEEEEEccCeEEEEecccc
Confidence 1122 3 45778999999999999875
No 299
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.72 E-value=3.1e-06 Score=100.79 Aligned_cols=221 Identities=9% Similarity=0.059 Sum_probs=130.4
Q ss_pred EecccCceEEEEeecccceeccccccCCCCEE---EEEeCCC--cEEEEcCCCCCceeEEEeccccccEEEEecCCCEEE
Q 001039 823 IRGHAGAITALHCVTKREVWDLVGDREDAGFF---ISGSTDC--LVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVV 897 (1179)
Q Consensus 823 l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~L---asgs~Dg--~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~ 897 (1179)
+..+.+.+.+=+|| |||+.+ ++...+| .|.+.++.......+..+.++.. ...++|||+.|+
T Consensus 180 lt~~~~~~~sP~wS------------PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~-~p~wSPDG~~La 246 (428)
T PRK01029 180 LTQEHSLSITPTWM------------HIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQL-MPTFSPRKKLLA 246 (428)
T ss_pred cccCCCCcccceEc------------cCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCcc-ceEECCCCCEEE
Confidence 43344445555665 898752 2444444 46666766433334444444332 247899999988
Q ss_pred EEeC-CC----cEEEEECCCC---eEEEEeecCCCcEEEEEEe-CCCEEEEEE-cCCeEEEE--eCCC-CeEEEEeccCC
Q 001039 898 SGSD-DQ----SVLVWDKQTS---QLLEELKGHDAQVSCVRML-SGERVLTAS-HDGTVKMW--DVRT-DTCVATVGRCS 964 (1179)
Q Consensus 898 sgs~-dg----~I~iwd~~t~---~~~~~~~~h~~~V~~l~~s-~~~~l~sgs-~dg~I~iw--d~~~-~~~~~~~~~~~ 964 (1179)
..+. +| .+..|++.++ +......++........|+ +|+.|+..+ .+|...+| ++.. +.....+....
T Consensus 247 f~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~ 326 (428)
T PRK01029 247 FISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY 326 (428)
T ss_pred EEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCC
Confidence 7653 22 3444776653 3333333333344667898 677777655 46655555 4432 23334444445
Q ss_pred CcEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCceeEEeecCCCCeEEEEEcC--CEEEE-EeC--CCcEEEEEccCC
Q 001039 965 SAVLCMEYDDSTGILAAGGRD---AVANIWDIRAGRQMHKFLGHTKWIRSIRMDR--DTVIT-GSD--DWTARMWSISRG 1036 (1179)
Q Consensus 965 ~~v~~l~~sp~~~~l~sgs~d---g~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~--~~l~s-gs~--dg~I~iwd~~~~ 1036 (1179)
..+....|+|||+.|+..+.+ ..|.+||+.+++... +......+....|++ +.++. +.. .+.|.+||+.++
T Consensus 327 ~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 327 RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 567788999999998876543 479999998887643 333334556677754 45554 332 356888998877
Q ss_pred eeeEEeecCCcCEEEEEEecCC
Q 001039 1037 TCDAVLACHAGPVQCVEYSSSD 1058 (1179)
Q Consensus 1037 ~~~~~~~~h~~~V~~l~~spdg 1058 (1179)
+...... ..+.+...+|+|-.
T Consensus 406 ~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 406 KTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred CEEEeec-CCCcccCceecCCC
Confidence 6544433 44556677887743
No 300
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.71 E-value=3.1e-05 Score=84.57 Aligned_cols=264 Identities=11% Similarity=0.174 Sum_probs=170.4
Q ss_pred CCcEEEEECCCC--eEE-EEeecCCCcEEEEEEe-CCCEEEEEEc---CCeEEEEeCCC--CeEE--EEeccCCCcEEEE
Q 001039 902 DQSVLVWDKQTS--QLL-EELKGHDAQVSCVRML-SGERVLTASH---DGTVKMWDVRT--DTCV--ATVGRCSSAVLCM 970 (1179)
Q Consensus 902 dg~I~iwd~~t~--~~~-~~~~~h~~~V~~l~~s-~~~~l~sgs~---dg~I~iwd~~~--~~~~--~~~~~~~~~v~~l 970 (1179)
++-|.+|++++. +.- ...-.+.+..+-++|+ +++.|.++.. +|.|..|.++. |+.. ........+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 567999998742 221 1122355678889999 4557777654 47777777664 5432 2222233445889
Q ss_pred EEcCCCCEEEEEe-CCCeEEEEeCCC-CceeE--EeecCCCC----------eEEEEEcC--CEEEEEe-CCCcEEEEEc
Q 001039 971 EYDDSTGILAAGG-RDAVANIWDIRA-GRQMH--KFLGHTKW----------IRSIRMDR--DTVITGS-DDWTARMWSI 1033 (1179)
Q Consensus 971 ~~sp~~~~l~sgs-~dg~I~iwD~~~-~~~~~--~~~~~~~~----------I~sl~~~~--~~l~sgs-~dg~I~iwd~ 1033 (1179)
+++++|++++++. ..|.|.++-++. |.... ....|.+. +....+++ +++++.+ .--.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 9999999998876 568899999865 43321 12233333 55556654 4666654 2346999999
Q ss_pred cCCeeeEEee---cCCcCEEEEEEecCCCEEEEEe-CCCcEEEEEcCCC-CcceEEEeecc--------cCceEEEEecC
Q 001039 1034 SRGTCDAVLA---CHAGPVQCVEYSSSDRGIITGS-SDGLLRFWENDDA-GGIKCVKNVTI--------HSSAILSINAG 1100 (1179)
Q Consensus 1034 ~~~~~~~~~~---~h~~~V~~l~~spdg~~l~sgs-~Dg~I~iwd~~~~-~~~~~~~~~~~--------h~~~i~sis~d 1100 (1179)
..|.....-. .....-+.|.|+|++++....+ -+++|.+|..+.. +..+.++.+.. ....-..+++|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 9876543221 2345678999999999987766 5899999999874 33444443321 12233556899
Q ss_pred CCEEEEEEC-CCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCC-cEEEEECC
Q 001039 1101 DHWLGIGAA-DNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNG-LLRLWEAT 1176 (1179)
Q Consensus 1101 g~~lasgs~-Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg-~I~vWdv~ 1176 (1179)
|++|.++.. ...|.+|.+... +..+ ........+...-++..++++|++|+.+++|+ +|.++..+
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~--------~g~L---~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPD--------GGKL---ELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCC--------CCEE---EEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 999998754 347888887632 2112 33333444455578899999999999998765 68888664
No 301
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.65 E-value=0.00013 Score=79.79 Aligned_cols=261 Identities=14% Similarity=0.172 Sum_probs=167.3
Q ss_pred CCcEEEEcCCCCCceeE-EEeccccccE--EEEecCCCEEEEEeCC---CcEEEEECCC--CeEEE--EeecCCCcEEEE
Q 001039 860 DCLVKIWDPSLRGSELR-ATLKGHTRTV--RAINSDRGKVVSGSDD---QSVLVWDKQT--SQLLE--ELKGHDAQVSCV 929 (1179)
Q Consensus 860 Dg~I~lWd~~~~~~~~~-~~l~~h~~~v--~~~s~d~~~l~sgs~d---g~I~iwd~~t--~~~~~--~~~~h~~~V~~l 929 (1179)
+.-|++|+++...+++. ..+-.+.+.. .+++++++.|.++..+ |.|..|.++. |+... .......+-..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 46699999874443321 1122222322 3679999999988654 7777776654 54432 222233344677
Q ss_pred EEe-CCCEEEEEE-cCCeEEEEeCCC-CeEE---EEeccCCCc----------EEEEEEcCCCCEEEEEeC-CCeEEEEe
Q 001039 930 RML-SGERVLTAS-HDGTVKMWDVRT-DTCV---ATVGRCSSA----------VLCMEYDDSTGILAAGGR-DAVANIWD 992 (1179)
Q Consensus 930 ~~s-~~~~l~sgs-~dg~I~iwd~~~-~~~~---~~~~~~~~~----------v~~l~~sp~~~~l~sgs~-dg~I~iwD 992 (1179)
+.+ +++.++++. ..|.|.++-++. |... ... .|.+. +....++|+++++++.+- .-.|.+|+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 777 677777776 468899998865 4322 222 22222 788999999999988763 34799999
Q ss_pred CCCCceeEEe---ecCCCCeEEEEEcCC---EEEEEeCCCcEEEEEccCC-eeeEEeec---------CCcCEEEEEEec
Q 001039 993 IRAGRQMHKF---LGHTKWIRSIRMDRD---TVITGSDDWTARMWSISRG-TCDAVLAC---------HAGPVQCVEYSS 1056 (1179)
Q Consensus 993 ~~~~~~~~~~---~~~~~~I~sl~~~~~---~l~sgs~dg~I~iwd~~~~-~~~~~~~~---------h~~~V~~l~~sp 1056 (1179)
+..|+....- ......-+-|.|+++ ..+++--+++|.+|..+.. .....++. ...+..++..++
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 9977653321 134456678888766 3445567899999998873 22222221 234677889999
Q ss_pred CCCEEEEEeC-CCcEEEEEcCCCCc-ceEEEeecc--cCceEEEEecCCCEEEEEECC-CcEEEEeCCCC
Q 001039 1057 SDRGIITGSS-DGLLRFWENDDAGG-IKCVKNVTI--HSSAILSINAGDHWLGIGAAD-NSMSLFHRPQE 1121 (1179)
Q Consensus 1057 dg~~l~sgs~-Dg~I~iwd~~~~~~-~~~~~~~~~--h~~~i~sis~dg~~lasgs~D-g~I~iwd~~~~ 1121 (1179)
||++|.++.. ...|.++.++..+. +..+..... ...+-..++++|++|+++..+ .+|.+|.+...
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 9999988753 34688888876532 333333332 333456778999998888764 57999988643
No 302
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.64 E-value=3.3e-06 Score=87.62 Aligned_cols=227 Identities=11% Similarity=0.014 Sum_probs=150.6
Q ss_pred eCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEE-EEeecCCCcEEEEEEe--CC
Q 001039 858 STDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLL-EELKGHDAQVSCVRML--SG 934 (1179)
Q Consensus 858 s~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~-~~~~~h~~~V~~l~~s--~~ 934 (1179)
+....|-+|+...+....+...+|-+-.-.++.-...+|+.||..|...+|...+.+.. .....|...|+-+.-. ..
T Consensus 49 ~~t~sv~i~~~y~N~~~iv~~y~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~ 128 (344)
T KOG4532|consen 49 SKTISVPINSHYSNPKGIVEFYTGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLK 128 (344)
T ss_pred cceeeeEeccccCCchhhEEeeecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccc
Confidence 33456888887644444444444433333344556678999999999999999876543 3334444444332211 23
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeEE--eecCCCCeEE
Q 001039 935 ERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG-RQMHK--FLGHTKWIRS 1011 (1179)
Q Consensus 935 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~-~~~~~--~~~~~~~I~s 1011 (1179)
..+..++.|.++++.++..+..........-.+.+++++++++++++.+....|..|.+... +.+.. .......-.+
T Consensus 129 ~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~ 208 (344)
T KOG4532|consen 129 FPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFY 208 (344)
T ss_pred cceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCcee
Confidence 45778889999999988765543333222234889999999999999999999999988653 32222 2233344456
Q ss_pred EEEcC--CEEEEEeCCCcEEEEEccCCeee-----EEeecCCcCEEEEEEecCCC--EEEEEeCCCcEEEEEcCCCCcce
Q 001039 1012 IRMDR--DTVITGSDDWTARMWSISRGTCD-----AVLACHAGPVQCVEYSSSDR--GIITGSSDGLLRFWENDDAGGIK 1082 (1179)
Q Consensus 1012 l~~~~--~~l~sgs~dg~I~iwd~~~~~~~-----~~~~~h~~~V~~l~~spdg~--~l~sgs~Dg~I~iwd~~~~~~~~ 1082 (1179)
.+|+. ..+|+++.||++.|||++..... .+-..|.+.+..+.|++.|. +|...-.-+.+.+.|+++....+
T Consensus 209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred eeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence 66644 48999999999999999874322 22335899999999998654 35555556789999999855333
Q ss_pred EE
Q 001039 1083 CV 1084 (1179)
Q Consensus 1083 ~~ 1084 (1179)
.+
T Consensus 289 ~I 290 (344)
T KOG4532|consen 289 VI 290 (344)
T ss_pred EE
Confidence 33
No 303
>KOG3823 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=1.6e-06 Score=95.08 Aligned_cols=345 Identities=13% Similarity=0.191 Sum_probs=195.2
Q ss_pred ccccccccccCCCCCCCCCCCCCCcccCCCceEEeecCCCCCCCCCCCceeEEEEEc----CCCCeEEEEEEEeccCCCH
Q 001039 34 LSSVLDQFPPLNHSLYTPPPPQLSTCVLPAGVQFYSSGFDSDDPSTFPRTYPIVLTE----GDGSKIYVSCISFRDPVSE 109 (1179)
Q Consensus 34 ~p~vl~~yP~~~~~~~~~~~~~~~~fc~P~g~~~~~~~~~~~~~~~~p~~f~fvlT~----~~g~~~Yg~cl~f~e~~~~ 109 (1179)
-|+|-+-||....-++|..=+.+|...+|+|---+- + .|-.|.|.- .|...+||+.- |+++..
T Consensus 24 GpeIE~~~~~pe~~~~p~~W~~LPflaLPDGsHsfe-------e----dfvyFtLp~~~~PnDegtifgvSC--~RQi~~ 90 (630)
T KOG3823|consen 24 GPEIEFSHPSPERNECPSGWKYLPFLALPDGSHSFE-------E----DFVYFTLPSLYEPNDEGTIFGVSC--YRQIRV 90 (630)
T ss_pred CCceeeecCCCCcCcCccccccCcceecCCCccccc-------c----ceEEEecccccCCCCCccEEEEEe--ehhhhh
Confidence 477888887544445676667889999999963221 1 122334432 12335787632 233322
Q ss_pred H-HHHhccCCCCccCCeEEEEEcCCChHHHHHHHHHHHHHHhhccCCC-CccHHHHHHhhcccCCCCCCCCceEEeeecc
Q 001039 110 D-IAEAYRIPANSFADKCICLVSRSPSFRILRNALEEIYSLCFLSDGS-SKPLWDVISHLVSNVPLPTPGKNRVLFAIEN 187 (1179)
Q Consensus 110 ~-~~~~~~~~~~~~~~~~icllS~~p~~~~f~~~L~~i~~~~~~~~~~-~~~~~~~i~~~l~~~p~P~pg~~~~~~~~~~ 187 (1179)
+ +......-....+.|++|+|+|.|.|.-.+.=|..+-+..++...- ...+.+-..+-|..+-.|.-.+
T Consensus 91 ~~Lk~~~~DvTRStVQKavvVi~r~PifG~IkdkL~iVtnAfF~QgDFs~~~~l~~~y~~l~a~~~~~l~R--------- 161 (630)
T KOG3823|consen 91 EKLKIRTADVTRSTVQKAVVVIARLPIFGYIKDKLAIVTNAFFDQGDFSGTELLAKAYQQLNACLQDDLSR--------- 161 (630)
T ss_pred hhhcccccccchhhhheeEEEEEcCCccceehhhhHHhhhhhhcccCcccHHHHHHHHHHHHhhcchhhhc---------
Confidence 1 1111011113457899999999999999999998887766642211 1222222222222221221111
Q ss_pred ceeEEeCCCCCCCCCCCc-chHHHhccCChhhHHHHHHHHhccccEEEEeCCcchHHHHHHHHHHcc-------------
Q 001039 188 CLLSVEAPPKEGLPHADI-SFQPLVQLLDVDNLITLFTAVLLERRILLRSNKYSLLTLVSEAICHLI------------- 253 (1179)
Q Consensus 188 ~~~~~~~p~~~~lp~~~~-~~~~l~~~l~~~~~~~l~~~~L~E~~il~~s~~~~~ls~~~~al~~ll------------- 253 (1179)
+|. ..+- .+. ++..++... -.|.+-|+.++|+++|||++.+....|.....+|.+|+
T Consensus 162 ------~~e-~~~h-IgL~nLr~il~~w-r~naLvLlK~~lL~krIvvyg~~ve~lcnlq~gl~SLIP~~Ms~lqDs~sp 232 (630)
T KOG3823|consen 162 ------RPE-RHFH-IGLSNLREILLHW-RHNALVLLKLMLLQKRIVVYGSPVEQLCNLQLGLASLIPSPMSDLQDSLSP 232 (630)
T ss_pred ------chh-hhee-ehHHHHHHHHHHH-HHhHHHHHHHHHhcceEEEeCCcHHHHHHHHHHHHHhcCCcchhhhcccCh
Confidence 000 0000 010 122222222 35788899999999999999999999988888888775
Q ss_pred ----------------------------cccC---CCceeecccchhhhhhccCCc--ceEEeccCCCCccccCCCcEEE
Q 001039 254 ----------------------------YPFR---WQHVYIPLLFFSGVDYIDAPT--PYMMGLHSGVDTSNLAMDGVVV 300 (1179)
Q Consensus 254 ----------------------------~P~~---w~~~~IP~lP~~l~~~l~aP~--P~iiGi~~~~~~~~~~~~~~~~ 300 (1179)
+|+. =-..|-|..|..+++.|++|+ -|+||............-++++
T Consensus 233 ~a~~~e~~L~~vaS~~~sd~~slla~~GfPl~IF~~G~lfsPYtpLq~m~~l~~~~~ls~~iGtsNtL~~~~~~~~~~~v 312 (630)
T KOG3823|consen 233 EAQEAEAELEAVASVAASDEQSLLASAGFPLSIFASGNLFSPYTPLQYMDLLSDPMVLSYVIGTSNTLFQQKRQLADVLV 312 (630)
T ss_pred hHHHHHHhhccchhhhcccHHHHHHhcCCceeeeccCcccCCCCchHHHhhhcccceeEeeecCchHHHHHhhhhccEEE
Confidence 2322 235678999999999999986 5788865443333344456889
Q ss_pred EEcCCCeeeCCCC-C-CCC--C---chhhhhhHHHHHHhcCCCcccccccCCCCCCcccccccCCCCchhhhHHHHHHHH
Q 001039 301 VDLEYNRICTTEE-I-PPI--P---EPELSSLRGDILKLLYPNVVGIDRMNAGGSSEHYSKVCSKPWGEEHDLQLRFIFL 373 (1179)
Q Consensus 301 vdlD~~~i~~~~~-~-~~l--P---~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~Fl 373 (1179)
|.-|+.++..-+. + +.+ . +++...+..+....+ +.. . .-.+.-+.-||+-|-
T Consensus 313 v~~dt~~~d~~Dptl~~~l~Ls~~Dk~wme~I~s~v~ssl-------~~E---------~-----p~FEGSedwIR~QFe 371 (630)
T KOG3823|consen 313 VIEDTANLDAHDPTLRRQLVLSTEDKRWMEYIMSHVQSSL-------PKE---------D-----PEFEGSEDWIREQFE 371 (630)
T ss_pred EecCcccccccCcchhcceeeecccHHHHHHHHHHhhhcC-------ccc---------c-----cCcCChHHHHHHHHH
Confidence 9999888866532 1 111 1 122222211111000 000 0 002234567999998
Q ss_pred HHHHHHHhh--HHhcccccCccccChHHHhcccccCCCCCCchHHHHHHHHhHHHHHHHc
Q 001039 374 KFLASILGG--YRNFIENTGTQVFNAQAFLKKRSRSTNQPPDPMITQFLDSQGFLDYLER 431 (1179)
Q Consensus 374 ~~~~~ll~~--y~~~l~~~~~~~F~~~~Fl~~~~~~~~~~~~~F~~~f~~tq~F~~Fie~ 431 (1179)
.++.-||.. |.+|+....+.....-.+|-+-+- ..-+...|+..|.+||-|..|-+.
T Consensus 372 ~Yi~glL~tvk~~d~l~Kq~DsiLsqyhylpstsc-~~~fn~~f~~~wk~Tq~F~iwn~~ 430 (630)
T KOG3823|consen 372 GYILGLLRTVKAPDALPKQKDSILSQYHYLPSTSC-NDHFNAHFMGAWKRTQCFQIWNDV 430 (630)
T ss_pred HHHHHHHHHhhccccccccchhhHhhhhhccCCCh-hhhhhHHHHHHHHhhceeehhhcc
Confidence 888877753 445665444444444445543211 123456899999999999988543
No 304
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.62 E-value=2.7e-05 Score=82.64 Aligned_cols=222 Identities=10% Similarity=0.145 Sum_probs=126.3
Q ss_pred EEeCCCEEEEEEcCCeEEEEeCCCC--eEEEE---eccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec
Q 001039 930 RMLSGERVLTASHDGTVKMWDVRTD--TCVAT---VGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG 1004 (1179)
Q Consensus 930 ~~s~~~~l~sgs~dg~I~iwd~~~~--~~~~~---~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~ 1004 (1179)
+.+++..+++.-.|..|.+-..+.. ..+.+ -+...-.-+-++||||+..||.+...|+|+++|+... .+..+..
T Consensus 4 ~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p 82 (282)
T PF15492_consen 4 ALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPP 82 (282)
T ss_pred eecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCc
Confidence 3444445556666777777665542 12222 2233345678999999999999999999999998753 3333322
Q ss_pred C-------CCCeEEEEEc-----CC---EEEEEeCCCcEEEEEccCC-----eeeEEee---cCCcCEEEEEEecCCCEE
Q 001039 1005 H-------TKWIRSIRMD-----RD---TVITGSDDWTARMWSISRG-----TCDAVLA---CHAGPVQCVEYSSSDRGI 1061 (1179)
Q Consensus 1005 ~-------~~~I~sl~~~-----~~---~l~sgs~dg~I~iwd~~~~-----~~~~~~~---~h~~~V~~l~~spdg~~l 1061 (1179)
. ...|..+.|- .+ .+++-..+|.++-|-+..+ +...++. .+...|+++.++|..+.|
T Consensus 83 ~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LL 162 (282)
T PF15492_consen 83 AMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLL 162 (282)
T ss_pred ccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEE
Confidence 1 2355566551 11 5667777888887776432 2333333 246789999999999988
Q ss_pred EEEeCCCc-EEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCc------EEEEeCCCCCcCcccCCCCccc
Q 001039 1062 ITGSSDGL-LRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNS------MSLFHRPQERLGGFSGTGSKMS 1134 (1179)
Q Consensus 1062 ~sgs~Dg~-I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~------I~iwd~~~~~~~~~~~~g~~~~ 1134 (1179)
+.|+.... -..+.... ......+.+.+ +|..+.+. ...|+. -.+|.+.+.
T Consensus 163 lVgG~~~~~~~~s~a~~-~GLtaWRiL~~--------~Pyyk~v~-~~~~~~~~~~~~~~~~~~~~~------------- 219 (282)
T PF15492_consen 163 LVGGCEQNQDGMSKASS-CGLTAWRILSD--------SPYYKQVT-SSEDDITASSKRRGLLRIPSF------------- 219 (282)
T ss_pred EEeccCCCCCccccccc-cCceEEEEcCC--------CCcEEEcc-ccCccccccccccceeeccce-------------
Confidence 88774322 00110000 00111111111 12222211 111111 122222210
Q ss_pred cceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001039 1135 GWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1135 ~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
............|..|..||||+.||+...+|.|.+|++.+
T Consensus 220 --~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 220 --KFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred --eeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 11111123345699999999999999999999999999864
No 305
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.61 E-value=3.5e-05 Score=101.01 Aligned_cols=226 Identities=10% Similarity=0.108 Sum_probs=146.3
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCceeEEEecc--cc--------------ccEEEEecCCCEEEEEe-CCCcEEEEECCC
Q 001039 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKG--HT--------------RTVRAINSDRGKVVSGS-DDQSVLVWDKQT 912 (1179)
Q Consensus 850 d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~--h~--------------~~v~~~s~d~~~l~sgs-~dg~I~iwd~~t 912 (1179)
+++++++-+.++.|++||.. +.. ...+.+ .. ..-.++.++++.|+++. .++.|+++|..+
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~--G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~ 655 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLD--GNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVN 655 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCC--CCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCC
Confidence 56677888888999999965 222 222221 10 01125677777666654 457899999887
Q ss_pred CeEEEEeecC-----------------CCcEEEEEEeC--CCEEEEEEcCCeEEEEeCCCCeEEEEec--------c---
Q 001039 913 SQLLEELKGH-----------------DAQVSCVRMLS--GERVLTASHDGTVKMWDVRTDTCVATVG--------R--- 962 (1179)
Q Consensus 913 ~~~~~~~~~h-----------------~~~V~~l~~s~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~--------~--- 962 (1179)
+.. .++.+. -..-+.+++++ +..+++.+.++.|++||..++....... +
T Consensus 656 ~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~ 734 (1057)
T PLN02919 656 ETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSG 734 (1057)
T ss_pred CEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCcc
Confidence 653 333211 11235788874 4456677788999999998775432110 0
Q ss_pred ---CCCcEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCceeEEeec-------------C--------CCCeEEEEEc--
Q 001039 963 ---CSSAVLCMEYDDSTGILA-AGGRDAVANIWDIRAGRQMHKFLG-------------H--------TKWIRSIRMD-- 1015 (1179)
Q Consensus 963 ---~~~~v~~l~~sp~~~~l~-sgs~dg~I~iwD~~~~~~~~~~~~-------------~--------~~~I~sl~~~-- 1015 (1179)
.-.....++++|+++.++ +-+.++.|++||+.++.......+ . -.....++++
T Consensus 735 ~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~d 814 (1057)
T PLN02919 735 TSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKD 814 (1057)
T ss_pred ccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCC
Confidence 012346799999998554 555678999999987653211100 0 0123466664
Q ss_pred CCEEEEEeCCCcEEEEEccCCeeeEEee-------------cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 001039 1016 RDTVITGSDDWTARMWSISRGTCDAVLA-------------CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAG 1079 (1179)
Q Consensus 1016 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~-------------~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~ 1079 (1179)
++.+++-+.++.|++||..++....... +.-.....++++++|+.+++-+.++.|++||+.++.
T Consensus 815 G~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 815 GQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 4578888889999999998876553321 111257789999999999988899999999998854
No 306
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.54 E-value=5.4e-07 Score=93.02 Aligned_cols=224 Identities=14% Similarity=0.175 Sum_probs=131.2
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEE------------EEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEE-E
Q 001039 893 RGKVVSGSDDQSVLVWDKQTSQLL------------EELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCV-A 958 (1179)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~------------~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~-~ 958 (1179)
...|+++..++.+......++.+. +.+..|.++-.+-+.+ .++.+++++.||.+.+++.+....+ .
T Consensus 47 ~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~ 126 (319)
T KOG4714|consen 47 EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMS 126 (319)
T ss_pred hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhh
Confidence 345666666666655554443332 2222333332222223 5677999999999999998752111 1
Q ss_pred EeccCCCcEEEEEEcCCCCEEEEEe-----CCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC---EEEEEeCCCcEEE
Q 001039 959 TVGRCSSAVLCMEYDDSTGILAAGG-----RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD---TVITGSDDWTARM 1030 (1179)
Q Consensus 959 ~~~~~~~~v~~l~~sp~~~~l~sgs-----~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~---~l~sgs~dg~I~i 1030 (1179)
.+......-.+.++...++.+.++. .-+..+.|+++..+....-......|.+++-++. .+++|+.||.+.+
T Consensus 127 ~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l 206 (319)
T KOG4714|consen 127 RIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGL 206 (319)
T ss_pred hcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEE
Confidence 1111111222333334455454432 2234556665543322221222234777777653 8899999999999
Q ss_pred EEccCCee-eEEeecCCcCEEEEEEec-CCCEEEEEeCCCcEEEEEcCCCCcceEE---------------E-------e
Q 001039 1031 WSISRGTC-DAVLACHAGPVQCVEYSS-SDRGIITGSSDGLLRFWENDDAGGIKCV---------------K-------N 1086 (1179)
Q Consensus 1031 wd~~~~~~-~~~~~~h~~~V~~l~~sp-dg~~l~sgs~Dg~I~iwd~~~~~~~~~~---------------~-------~ 1086 (1179)
||.++... ...+..|..+++.+.|+| ++..|+++++||.+.-||..+.- +.+- + .
T Consensus 207 ~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~-l~i~~~~s~~s~WLsgD~v~s~i~i~~l 285 (319)
T KOG4714|consen 207 WDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTF-LSISNQASVISSWLSGDPVKSRIEITSL 285 (319)
T ss_pred EEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCce-EEecCccccccccccCCcccceEeeecc
Confidence 99998743 344678999999999999 46789999999999999987410 0000 0 0
Q ss_pred ecccCceEEEEecCCCEEEEEECCCcEEEEe
Q 001039 1087 VTIHSSAILSINAGDHWLGIGAADNSMSLFH 1117 (1179)
Q Consensus 1087 ~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd 1117 (1179)
+......|.++.--|..|++|++-+.|++++
T Consensus 286 l~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 286 LPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ccccceeeeeeeccCceEEeccccceEEEec
Confidence 0111122333344678888888888888765
No 307
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.53 E-value=1.3e-05 Score=83.27 Aligned_cols=227 Identities=7% Similarity=-0.017 Sum_probs=156.0
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE---EecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCc
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA---INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQ 925 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~---~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~ 925 (1179)
....+||.||.-|...+|....+.. ..+....|...|.- .+-....+..++.|.++++.+++.+..........-.
T Consensus 82 ~kc~~la~gG~~g~fd~~~~~tn~~-h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~ 160 (344)
T KOG4532|consen 82 NKCVTLADGGASGQFDLFACNTNDG-HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLT 160 (344)
T ss_pred ccccEEEeccccceeeeecccCccc-ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccc
Confidence 4567899999999999999874333 33444555555442 2333455777888888888887755433332222233
Q ss_pred EEEEEEe-CCCEEEEEEcCCeEEEEeCCCCe-E-EE-EeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE-
Q 001039 926 VSCVRML-SGERVLTASHDGTVKMWDVRTDT-C-VA-TVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMH- 1000 (1179)
Q Consensus 926 V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~-~-~~-~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~- 1000 (1179)
+.+++++ ++.+.++.+....|-.|.+.... . .. ......+.-.+..|+.....+|++..||.+.|||++......
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 7788888 67888888999999999887542 2 22 223344556788999999999999999999999999754322
Q ss_pred ----EeecCCCCeEEEEEcC----CEEEEEeCCCcEEEEEccCCeeeEEee-------cCCc-CEEEEEEecCCCEEEEE
Q 001039 1001 ----KFLGHTKWIRSIRMDR----DTVITGSDDWTARMWSISRGTCDAVLA-------CHAG-PVQCVEYSSSDRGIITG 1064 (1179)
Q Consensus 1001 ----~~~~~~~~I~sl~~~~----~~l~sgs~dg~I~iwd~~~~~~~~~~~-------~h~~-~V~~l~~spdg~~l~sg 1064 (1179)
+-..|.+.+..+.|+. ++|+..-.-+.+.+.|++++.....+. .|.. .|..-.|+.++..+.+.
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK 320 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccc
Confidence 2235788999999963 366666667889999999987655433 2333 37777888877777666
Q ss_pred eCCCcEEEEEcCC
Q 001039 1065 SSDGLLRFWENDD 1077 (1179)
Q Consensus 1065 s~Dg~I~iwd~~~ 1077 (1179)
+++. +.-|++.+
T Consensus 321 ~e~~-~ae~ni~s 332 (344)
T KOG4532|consen 321 NELQ-GAEYNILS 332 (344)
T ss_pred cchh-hheeeccc
Confidence 5543 55666655
No 308
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.49 E-value=5.9e-07 Score=92.74 Aligned_cols=183 Identities=15% Similarity=0.171 Sum_probs=117.2
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeEEEe-ccccccE-EEEecCCCEEEEEeC-----CCcEEEEECCCCeEEEEeec
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATL-KGHTRTV-RAINSDRGKVVSGSD-----DQSVLVWDKQTSQLLEELKG 921 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l-~~h~~~v-~~~s~d~~~l~sgs~-----dg~I~iwd~~t~~~~~~~~~ 921 (1179)
-.++-+++|..||.+.+.+.+. ........ ..|.+.. .++...++.+.+++. -+..++|+++..+....-+.
T Consensus 99 ~~~t~V~~~~~dg~~~v~s~~~-~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~ 177 (319)
T KOG4714|consen 99 MTDNRVCIGYADGSLAVFSTDK-DLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK 177 (319)
T ss_pred ccCCceEecCCCceEEEEechH-HHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc
Confidence 4577899999999999999652 11111111 1121111 133445555555432 23455666654333322222
Q ss_pred CCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCeE-EEEeccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc
Q 001039 922 HDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTC-VATVGRCSSAVLCMEYDD-STGILAAGGRDAVANIWDIRAGR 997 (1179)
Q Consensus 922 h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~~~~v~~l~~sp-~~~~l~sgs~dg~I~iwD~~~~~ 997 (1179)
....|.+++-+ ..+.+++|+.||.+.+||.++... ...++.|+.+++.+-|+| ++..|++++.||.+..||..+.-
T Consensus 178 ~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~ 257 (319)
T KOG4714|consen 178 ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTF 257 (319)
T ss_pred ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCce
Confidence 33448888777 466788999999999999998754 344578999999999999 67789999999999999987411
Q ss_pred -----------------eeEE-------eecCCCCeEEEEEcCCEEEEEeCCCcEEEEE
Q 001039 998 -----------------QMHK-------FLGHTKWIRSIRMDRDTVITGSDDWTARMWS 1032 (1179)
Q Consensus 998 -----------------~~~~-------~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd 1032 (1179)
+++. +......|.++...+..+++|+.-+-|++++
T Consensus 258 l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 258 LSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 1111 0112224555666677888888888888775
No 309
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.49 E-value=6.5e-05 Score=79.82 Aligned_cols=225 Identities=13% Similarity=0.092 Sum_probs=132.6
Q ss_pred cCCCCEEEEEeCCCcEEEEcCCCCCceeEEEecccccc-----EEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeec-
Q 001039 848 REDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRT-----VRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG- 921 (1179)
Q Consensus 848 s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~-----v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~- 921 (1179)
+.||+.||.-- |..|-|=....+=...+...+-..++ -.++|||+..||.+...|+|+++|+... .+..+..
T Consensus 6 ~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~ 83 (282)
T PF15492_consen 6 SSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPA 83 (282)
T ss_pred cCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcc
Confidence 36788777664 55666655432212222222222221 2378999999999999999999998753 3333322
Q ss_pred ------CCCcEEEEEEeC-------CCEEEEEEcCCeEEEEeCCCC-----eEEEEec---cCCCcEEEEEEcCCCCEEE
Q 001039 922 ------HDAQVSCVRMLS-------GERVLTASHDGTVKMWDVRTD-----TCVATVG---RCSSAVLCMEYDDSTGILA 980 (1179)
Q Consensus 922 ------h~~~V~~l~~s~-------~~~l~sgs~dg~I~iwd~~~~-----~~~~~~~---~~~~~v~~l~~sp~~~~l~ 980 (1179)
-...|..+.|.+ ...+++-..+|.++-|-+..+ +...++. .....|.++.++|..++|+
T Consensus 84 ~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLl 163 (282)
T PF15492_consen 84 MSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLL 163 (282)
T ss_pred cccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEE
Confidence 235677777762 225777788888887775322 2233332 2467899999999999888
Q ss_pred EEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE---cCCE-EEEEeCCCc------EEEEEccCCeeeEEeecCCcCEE
Q 001039 981 AGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM---DRDT-VITGSDDWT------ARMWSISRGTCDAVLACHAGPVQ 1050 (1179)
Q Consensus 981 sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~---~~~~-l~sgs~dg~------I~iwd~~~~~~~~~~~~h~~~V~ 1050 (1179)
+||.... +++. -++....+++-.. .|-+ .++...|+. -.+|.+-+.............|.
T Consensus 164 VgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~ 233 (282)
T PF15492_consen 164 VGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF 233 (282)
T ss_pred EeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceE
Confidence 8875432 0000 0122223333333 1222 222222222 12333332222111123467899
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEee
Q 001039 1051 CVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNV 1087 (1179)
Q Consensus 1051 ~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~ 1087 (1179)
.|..||||+.||+...+|.|.+|++.+ .+....+
T Consensus 234 kmSlSPdg~~La~ih~sG~lsLW~iPs---L~~~~~W 267 (282)
T PF15492_consen 234 KMSLSPDGSLLACIHFSGSLSLWEIPS---LRLQRSW 267 (282)
T ss_pred EEEECCCCCEEEEEEcCCeEEEEecCc---chhhccc
Confidence 999999999999999999999999988 4444443
No 310
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.6e-06 Score=92.25 Aligned_cols=276 Identities=17% Similarity=0.184 Sum_probs=187.0
Q ss_pred ccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCC-CCceeEEEeccccccEEE--EecCCCEEEEEeC-
Q 001039 826 HAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSL-RGSELRATLKGHTRTVRA--INSDRGKVVSGSD- 901 (1179)
Q Consensus 826 H~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~-~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~- 901 (1179)
|.+.|+.+..+ -.+++.+++.||.++.|.-.. .+.+.+..+..|-..+.+ .+.++..+.|++.
T Consensus 8 hrd~i~hv~~t-------------ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~ 74 (558)
T KOG0882|consen 8 HRDVITHVFPT-------------KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDP 74 (558)
T ss_pred ccceeeeEeee-------------hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCc
Confidence 77888887653 578999999999999999653 345666667778777764 4788989999777
Q ss_pred CCcEEEEECCCCeEEEEeecC--CCcEEEEEEeCCC---EEE-EEEcCCeEEEEeCCCCeE--EEEeccCCCcEEEEEEc
Q 001039 902 DQSVLVWDKQTSQLLEELKGH--DAQVSCVRMLSGE---RVL-TASHDGTVKMWDVRTDTC--VATVGRCSSAVLCMEYD 973 (1179)
Q Consensus 902 dg~I~iwd~~t~~~~~~~~~h--~~~V~~l~~s~~~---~l~-sgs~dg~I~iwd~~~~~~--~~~~~~~~~~v~~l~~s 973 (1179)
|..++++|+++-..+..++.. .+.+.++ .++|+ .++ +.-.+|.+.++|-..+.+ ...-+-|..+|.++.++
T Consensus 75 Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~ 153 (558)
T KOG0882|consen 75 DHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYN 153 (558)
T ss_pred ccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEee
Confidence 999999999876554333211 1222211 22342 233 334678999999766543 33345688999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCC------CceeEEe---------ecCCCCeEEEEEc--CCEEEEEeCCCcEEEEEccCC
Q 001039 974 DSTGILAAGGRDAVANIWDIRA------GRQMHKF---------LGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRG 1036 (1179)
Q Consensus 974 p~~~~l~sgs~dg~I~iwD~~~------~~~~~~~---------~~~~~~I~sl~~~--~~~l~sgs~dg~I~iwd~~~~ 1036 (1179)
+.+..+++....|.|.-|.... .+....+ ........++.++ +..+.+-+.|..|++++.++|
T Consensus 154 qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 154 QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred ccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccc
Confidence 9999999999999999998762 1111111 1233455666664 558888889999999999988
Q ss_pred eeeEEeec--------------------------------CC-cCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceE
Q 001039 1037 TCDAVLAC--------------------------------HA-GPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKC 1083 (1179)
Q Consensus 1037 ~~~~~~~~--------------------------------h~-~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~ 1083 (1179)
+.++.+.. |. ..-+.++|...|++|+-|+-=| |++.++.++...+.
T Consensus 234 klvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri 312 (558)
T KOG0882|consen 234 KLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRI 312 (558)
T ss_pred hhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEE
Confidence 75544321 21 1345678999999999998777 88999888532222
Q ss_pred EEeec------------------------ccCceEEEEecCCCEEEEEECCCcEEEE
Q 001039 1084 VKNVT------------------------IHSSAILSINAGDHWLGIGAADNSMSLF 1116 (1179)
Q Consensus 1084 ~~~~~------------------------~h~~~i~sis~dg~~lasgs~Dg~I~iw 1116 (1179)
+..-. ....+...+.+|..+++++-..+.+++|
T Consensus 313 ~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 313 LGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred eccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 21100 1112222334567788888888889888
No 311
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.43 E-value=3.5e-06 Score=100.40 Aligned_cols=182 Identities=18% Similarity=0.249 Sum_probs=139.5
Q ss_pred CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEE
Q 001039 933 SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSI 1012 (1179)
Q Consensus 933 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl 1012 (1179)
++..++.|+....+..+|+++.+..+...-..+.|.-+.. +++.+.+|...|+|.+-|.++.+.++++..|++.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 5677888888889999999999887776555555665554 67889999999999999999999999999999999999
Q ss_pred EEcCCEEEEEeC---------CCcEEEEEccCCeeeEEeecCCcCEEEEEEecC-CCEEEEEeCCCcEEEEEcCCCCcc-
Q 001039 1013 RMDRDTVITGSD---------DWTARMWSISRGTCDAVLACHAGPVQCVEYSSS-DRGIITGSSDGLLRFWENDDAGGI- 1081 (1179)
Q Consensus 1013 ~~~~~~l~sgs~---------dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd-g~~l~sgs~Dg~I~iwd~~~~~~~- 1081 (1179)
...|+.|++++. |.-|+|||++..+.+.-+.-+.++ .-+.|+|. ...+++++..|...+-|..+....
T Consensus 224 Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~ 302 (1118)
T KOG1275|consen 224 DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP 302 (1118)
T ss_pred eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCc
Confidence 999999999884 556899999987766555544444 44566775 456788889999999983332111
Q ss_pred eEEEeecccCceE--EEEecCCCEEEEEECCCcEEEEe
Q 001039 1082 KCVKNVTIHSSAI--LSINAGDHWLGIGAADNSMSLFH 1117 (1179)
Q Consensus 1082 ~~~~~~~~h~~~i--~sis~dg~~lasgs~Dg~I~iwd 1117 (1179)
..+..+......+ .++|++|+.+|.|..+|.|.+|.
T Consensus 303 ~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 303 AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2222222223334 56689999999999999999997
No 312
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.40 E-value=3.4e-06 Score=92.68 Aligned_cols=152 Identities=18% Similarity=0.299 Sum_probs=108.3
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCe----EEEEeecCCCcEEEEEEe-CCCEEEEE---EcCCeEEEEeCCCCeEEEEec
Q 001039 890 NSDRGKVVSGSDDQSVLVWDKQTSQ----LLEELKGHDAQVSCVRML-SGERVLTA---SHDGTVKMWDVRTDTCVATVG 961 (1179)
Q Consensus 890 s~d~~~l~sgs~dg~I~iwd~~t~~----~~~~~~~h~~~V~~l~~s-~~~~l~sg---s~dg~I~iwd~~~~~~~~~~~ 961 (1179)
+++++++|++..+....++++.... ........ ..-+++.+. +......+ +....+.+|....+.+.-.+
T Consensus 71 s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~-~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~l- 148 (390)
T KOG3914|consen 71 SDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP-KRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPIL- 148 (390)
T ss_pred CCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc-cCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhh-
Confidence 5777888888888877777765432 22222222 222333333 34444443 34455566665555554444
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe-ecCCCCeEEEEEcCC-EEEEEeCCCcEEEEEccCCeee
Q 001039 962 RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKF-LGHTKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCD 1039 (1179)
Q Consensus 962 ~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~-~~~~~~I~sl~~~~~-~l~sgs~dg~I~iwd~~~~~~~ 1039 (1179)
+|-+.++.++++||+++++++..|+.|++-.....-.+..+ .||..-|..++.-++ .|++||.|++|++||+.+|+++
T Consensus 149 GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 149 GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCcc
Confidence 88999999999999999999999999999887766666554 579999999999554 6799999999999999999988
Q ss_pred EEee
Q 001039 1040 AVLA 1043 (1179)
Q Consensus 1040 ~~~~ 1043 (1179)
.++.
T Consensus 229 ~t~d 232 (390)
T KOG3914|consen 229 DTCD 232 (390)
T ss_pred cccc
Confidence 6654
No 313
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.37 E-value=7.4e-05 Score=88.49 Aligned_cols=186 Identities=8% Similarity=0.064 Sum_probs=114.0
Q ss_pred ceEEEEEccCCCc-eeec-cC--c--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceec
Q 001039 770 SWVQSMFSREASS-RSHS-FS--R--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWD 843 (1179)
Q Consensus 770 ~i~~~~fSpdg~~-las~-~~--d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~ 843 (1179)
......|||||+. ++.. .. + |.++|+.+++ .+.+....+.+.+..|+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~--------------------~~~lt~~~g~~~~~~~S------- 241 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK--------------------KEKIASSQGMLVVSDVS------- 241 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc--------------------EEEEecCCCcEEeeEEC-------
Confidence 5667799999985 5532 22 2 9999988776 22333345555666676
Q ss_pred cccccCCCCEEEEE-eCC--CcEEEEcCCCCCceeEEEeccccc--cEEEEecCCCEEEEEeCC-C--cEEEEECCCCeE
Q 001039 844 LVGDREDAGFFISG-STD--CLVKIWDPSLRGSELRATLKGHTR--TVRAINSDRGKVVSGSDD-Q--SVLVWDKQTSQL 915 (1179)
Q Consensus 844 ~~~~s~d~~~Lasg-s~D--g~I~lWd~~~~~~~~~~~l~~h~~--~v~~~s~d~~~l~sgs~d-g--~I~iwd~~t~~~ 915 (1179)
|||+.++.. +.+ ..|.++|+. +... ..+..+.. .-..++|||+.|+..+.. | .|.+.|+.+++.
T Consensus 242 -----PDG~~la~~~~~~g~~~Iy~~dl~--~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~ 313 (419)
T PRK04043 242 -----KDGSKLLLTMAPKGQPDIYLYDTN--TKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV 313 (419)
T ss_pred -----CCCCEEEEEEccCCCcEEEEEECC--CCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 899877643 334 457777765 3332 22332322 223689999988777642 2 688889988876
Q ss_pred EEEeecCCCcEEEEEEe-CCCEEEEEEcC---------CeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC
Q 001039 916 LEELKGHDAQVSCVRML-SGERVLTASHD---------GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD 985 (1179)
Q Consensus 916 ~~~~~~h~~~V~~l~~s-~~~~l~sgs~d---------g~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~d 985 (1179)
.+.... ... ...|+ +|+.++..+.. ..|.+.|+.++... .+... .......|+|||+.++..+.+
T Consensus 314 ~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 314 EQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred EeCccC-CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 443322 111 23788 67777655543 36888898888653 33322 223358899999988776543
Q ss_pred C---eEEEEeCCC
Q 001039 986 A---VANIWDIRA 995 (1179)
Q Consensus 986 g---~I~iwD~~~ 995 (1179)
+ .+.+.++..
T Consensus 389 ~~~~~L~~~~l~g 401 (419)
T PRK04043 389 GNQSALGIIRLNY 401 (419)
T ss_pred CCcEEEEEEecCC
Confidence 2 466667643
No 314
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.35 E-value=0.00029 Score=85.65 Aligned_cols=262 Identities=14% Similarity=0.129 Sum_probs=155.9
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeEEEeccccc------cEE--EEecCC-CEEEEEeCCCcEEEEECCCCeEEEEeec
Q 001039 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTR------TVR--AINSDR-GKVVSGSDDQSVLVWDKQTSQLLEELKG 921 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~------~v~--~~s~d~-~~l~sgs~dg~I~iwd~~t~~~~~~~~~ 921 (1179)
+..++.++.++.|.-.|.. +.+.+........ .+. .....+ ..++.++.+|.|..+|.++|+.+.....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~--tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAA--TGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECC--CChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 4456667777888888865 2333333222111 111 112223 7888899999999999999999988764
Q ss_pred CCCc-----EE-EEEEeCCCEEEEEE---------cCCeEEEEeCCCCeEEEEeccCCC--------------------c
Q 001039 922 HDAQ-----VS-CVRMLSGERVLTAS---------HDGTVKMWDVRTDTCVATVGRCSS--------------------A 966 (1179)
Q Consensus 922 h~~~-----V~-~l~~s~~~~l~sgs---------~dg~I~iwd~~~~~~~~~~~~~~~--------------------~ 966 (1179)
.... +. ...+. +..++.++ .+|.+..+|..+|+.+........ .
T Consensus 139 ~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 139 NDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 4321 11 11222 35555554 368899999999998877643211 0
Q ss_pred E-EEEEEcCCCCEEEEEeCCC------------------eEEEEeCCCCceeEEeecCCCC-----------eEEEE-Ec
Q 001039 967 V-LCMEYDDSTGILAAGGRDA------------------VANIWDIRAGRQMHKFLGHTKW-----------IRSIR-MD 1015 (1179)
Q Consensus 967 v-~~l~~sp~~~~l~sgs~dg------------------~I~iwD~~~~~~~~~~~~~~~~-----------I~sl~-~~ 1015 (1179)
+ .+.++++.+..++.++.++ .+.-+|.++|+...+++..... +..+. .+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 1 1345555667777887665 7999999999998776422111 11111 23
Q ss_pred CC---EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEE------------------eCCCcEEEEE
Q 001039 1016 RD---TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITG------------------SSDGLLRFWE 1074 (1179)
Q Consensus 1016 ~~---~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sg------------------s~Dg~I~iwd 1074 (1179)
+. .+++++.+|.+...|.++|+.+....... ..++.+| ..+..+ ..+|.+.-.|
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD 372 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD 372 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence 33 68888899999999999999887654210 1122333 222221 1356677777
Q ss_pred cCCCCcceEEEeecccC------ceE--EEEecCCCEEEEEECCCcEEEEeCCCC
Q 001039 1075 NDDAGGIKCVKNVTIHS------SAI--LSINAGDHWLGIGAADNSMSLFHRPQE 1121 (1179)
Q Consensus 1075 ~~~~~~~~~~~~~~~h~------~~i--~sis~dg~~lasgs~Dg~I~iwd~~~~ 1121 (1179)
..+++....... ..+. ... ..+...+..+++|+.||.++.+|..++
T Consensus 373 ~~tG~~~W~~~~-~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG 426 (488)
T cd00216 373 PKTGKVVWEKRE-GTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTG 426 (488)
T ss_pred CCCCcEeeEeeC-CccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCC
Confidence 776442222211 1000 111 122346788999999999999998843
No 315
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.31 E-value=0.00028 Score=83.54 Aligned_cols=209 Identities=8% Similarity=0.037 Sum_probs=122.2
Q ss_pred CeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCE-EEEEeC---CCeEEEEeCCCCceeEEeecCCCCeEEEEEc--CC
Q 001039 944 GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI-LAAGGR---DAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RD 1017 (1179)
Q Consensus 944 g~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~-l~sgs~---dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~--~~ 1017 (1179)
..|.+-|..... .+.+.... ......|+|+|+. ++..+. +..|.++|+.+++..... ...+......|+ ++
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCC
Confidence 345555554333 33332333 7788999999985 554433 357999999888654433 344444555665 44
Q ss_pred EEE-EEeCC--CcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeC-CC--cEEEEEcCCCCcceEEEeecccC
Q 001039 1018 TVI-TGSDD--WTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSS-DG--LLRFWENDDAGGIKCVKNVTIHS 1091 (1179)
Q Consensus 1018 ~l~-sgs~d--g~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~-Dg--~I~iwd~~~~~~~~~~~~~~~h~ 1091 (1179)
.++ +.+.+ ..|.++|+.+++.. .+..+.+......|+|||+.|+..+. .| .|.+.|+.++. .+.+. ..+..
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~-~~rlt-~~g~~ 322 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS-VEQVV-FHGKN 322 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC-eEeCc-cCCCc
Confidence 443 34333 46888888777643 34434433445689999998877664 33 57777887643 22221 11222
Q ss_pred ceEEEEecCCCEEEEEECC---------CcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEE
Q 001039 1092 SAILSINAGDHWLGIGAAD---------NSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRIC 1162 (1179)
Q Consensus 1092 ~~i~sis~dg~~lasgs~D---------g~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~La 1162 (1179)
...++|||+.|+..+.. ..|.+.|+.++.. +.+. .. +......|+|||+.|+
T Consensus 323 --~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-------------~~LT---~~-~~~~~p~~SPDG~~I~ 383 (419)
T PRK04043 323 --NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-------------RRLT---AN-GVNQFPRFSSDGGSIM 383 (419)
T ss_pred --CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-------------EECC---CC-CCcCCeEECCCCCEEE
Confidence 24789999998877654 2577777763321 1111 11 1223578999999887
Q ss_pred EEeCCC-c--EEEEECCC
Q 001039 1163 SGGRNG-L--LRLWEATI 1177 (1179)
Q Consensus 1163 sgs~Dg-~--I~vWdv~t 1177 (1179)
..+.++ . +.+.+++.
T Consensus 384 f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 384 FIKYLGNQSALGIIRLNY 401 (419)
T ss_pred EEEccCCcEEEEEEecCC
Confidence 765432 2 45555543
No 316
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=1.7e-06 Score=92.65 Aligned_cols=150 Identities=19% Similarity=0.299 Sum_probs=118.4
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCC-----eEEEEeccCC
Q 001039 891 SDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTD-----TCVATVGRCS 964 (1179)
Q Consensus 891 ~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~-----~~~~~~~~~~ 964 (1179)
-.+-. ++.+.+..|-+-|+++|.. +.+. ..+.|.++.|. .++.+..|+.+|.|..+|++.+ .+...+ -|+
T Consensus 223 i~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~ 298 (425)
T KOG2695|consen 223 IMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHD 298 (425)
T ss_pred cceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcC
Confidence 34444 5566677889999988754 3343 56778888888 5889999999999999999875 333444 578
Q ss_pred CcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCce---eEEeecCCCCeEEEEE----cCCEEEEEeCCCcEEEEEccCC
Q 001039 965 SAVLCMEYDD-STGILAAGGRDAVANIWDIRAGRQ---MHKFLGHTKWIRSIRM----DRDTVITGSDDWTARMWSISRG 1036 (1179)
Q Consensus 965 ~~v~~l~~sp-~~~~l~sgs~dg~I~iwD~~~~~~---~~~~~~~~~~I~sl~~----~~~~l~sgs~dg~I~iwd~~~~ 1036 (1179)
+.|+++..-. ++++|++.+.+|.|.+||.+.-++ +.++.||-+.-.-+.+ ....+++++.|...|||.++.|
T Consensus 299 Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 299 SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 8999998877 888999999999999999998777 8888888765444333 3448888999999999999999
Q ss_pred eeeEEeec
Q 001039 1037 TCDAVLAC 1044 (1179)
Q Consensus 1037 ~~~~~~~~ 1044 (1179)
..+.++..
T Consensus 379 hLl~tipf 386 (425)
T KOG2695|consen 379 HLLCTIPF 386 (425)
T ss_pred ceeeccCC
Confidence 99888763
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=3.1e-05 Score=91.90 Aligned_cols=178 Identities=14% Similarity=0.168 Sum_probs=130.5
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcE
Q 001039 888 AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAV 967 (1179)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v 967 (1179)
|..-.++.++-|+.+|.|++.+.. +.. .+...|... -..|.++++|+.||+|.|-.+-+.+...++ ....++
T Consensus 44 ~~av~~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~-df~rpi 115 (846)
T KOG2066|consen 44 CCAVHDKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS-----ILEGEYVASCSDDGKVVIGSLFTDDEITQY-DFKRPI 115 (846)
T ss_pred HHHhhcceeeeccccceEEEEecC-Ccc-ccccccccc-----ccCCceEEEecCCCcEEEeeccCCccceeE-ecCCcc
Confidence 344567899999999999999876 333 333334433 237999999999999999999888877666 456789
Q ss_pred EEEEEcCC-----CCEEEEEeCCCeEEEEeCCC-C-ceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeE
Q 001039 968 LCMEYDDS-----TGILAAGGRDAVANIWDIRA-G-RQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDA 1040 (1179)
Q Consensus 968 ~~l~~sp~-----~~~l~sgs~dg~I~iwD~~~-~-~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 1040 (1179)
.+++++|+ .+.+++||..| +.++.-+- | +....+....++|.++.|.++++|-++.+| |++||+.+++.+.
T Consensus 116 ksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~ 193 (846)
T KOG2066|consen 116 KSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLT 193 (846)
T ss_pred eeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCC-cEEEeccccceee
Confidence 99999997 56788999888 76765321 1 111245667789999999999999998776 8999999988877
Q ss_pred EeecCCcC------EEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1041 VLACHAGP------VQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1041 ~~~~h~~~------V~~l~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
.+...... -..+.|.++.+ |+.| ...+|+|..++.
T Consensus 194 ~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 194 NIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIKK 234 (846)
T ss_pred ccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEec
Confidence 76643333 24567776554 4444 555688888873
No 318
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.29 E-value=1.2e-05 Score=96.09 Aligned_cols=184 Identities=10% Similarity=0.159 Sum_probs=138.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEE
Q 001039 975 STGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEY 1054 (1179)
Q Consensus 975 ~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 1054 (1179)
++..++.|+....+..+|+++.+..+...-..+.|.-+..++..+.+|...|+|.+-|.++.+.++++.+|.+.|..+..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv 225 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV 225 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence 44557778877888999999998887776666668888889999999999999999999999999999999999987765
Q ss_pred ecCCCEEEEEeC---------CCcEEEEEcCCCCcceEEEeecccCce-EEEEecC-CCEEEEEECCCcEEEEeCCCCCc
Q 001039 1055 SSSDRGIITGSS---------DGLLRFWENDDAGGIKCVKNVTIHSSA-ILSINAG-DHWLGIGAADNSMSLFHRPQERL 1123 (1179)
Q Consensus 1055 spdg~~l~sgs~---------Dg~I~iwd~~~~~~~~~~~~~~~h~~~-i~sis~d-g~~lasgs~Dg~I~iwd~~~~~~ 1123 (1179)
.|+.|+++|. |..|+|||++. .+.+..+..+..+ ...+.|. ...+++.+..|...+-|..+-
T Consensus 226 --~GNlLitCG~S~R~~~l~~D~FvkVYDLRm---mral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~l-- 298 (1118)
T KOG1275|consen 226 --QGNLLITCGYSMRRYNLAMDPFVKVYDLRM---MRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATL-- 298 (1118)
T ss_pred --cCCeEEEeecccccccccccchhhhhhhhh---hhccCCcccccCchhhhhcccccceEEEEecccceeecccccc--
Confidence 4899998874 56789999998 4444444444332 2344443 457788888899999884311
Q ss_pred CcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001039 1124 GGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1174 (1179)
Q Consensus 1124 ~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWd 1174 (1179)
++.. ....-.......+.++++|++|+.+|.|..+|.|.+|.
T Consensus 299 ------sNP~---~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 299 ------SNPP---AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ------CCCc---cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 0000 00111112233489999999999999999999999997
No 319
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.28 E-value=6.5e-06 Score=90.51 Aligned_cols=152 Identities=18% Similarity=0.239 Sum_probs=102.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce----eEEeecCCCCeEEEEE--cCCEEEE---EeCCCcEEEEEccCC
Q 001039 966 AVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ----MHKFLGHTKWIRSIRM--DRDTVIT---GSDDWTARMWSISRG 1036 (1179)
Q Consensus 966 ~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~----~~~~~~~~~~I~sl~~--~~~~l~s---gs~dg~I~iwd~~~~ 1036 (1179)
....+..+++++++|++..+....+++.+.... ...... ...-+++.+ +...... .+....+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 344566788899999998888877777765433 222211 112223333 2222233 334445566665554
Q ss_pred eeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEee-cccCceEEEEe-cCCCEEEEEECCCcEE
Q 001039 1037 TCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNV-TIHSSAILSIN-AGDHWLGIGAADNSMS 1114 (1179)
Q Consensus 1037 ~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~-~~h~~~i~sis-~dg~~lasgs~Dg~I~ 1114 (1179)
.+ ..+-+|-+.++.++|+||+++|+++..|+.|++-.... ...+..+ -||..-|..++ -++..|++||.|++++
T Consensus 143 ~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa---~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 143 RC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA---TFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLR 218 (390)
T ss_pred Cc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc---ccchhhhccccHhheeeeeeccCceeeecCCCCcEE
Confidence 33 34557999999999999999999999999999977665 2333333 37999898886 4667789999999999
Q ss_pred EEeCCCCC
Q 001039 1115 LFHRPQER 1122 (1179)
Q Consensus 1115 iwd~~~~~ 1122 (1179)
+||+.+++
T Consensus 219 ~Wd~~sgk 226 (390)
T KOG3914|consen 219 LWDITSGK 226 (390)
T ss_pred EEecccCC
Confidence 99998554
No 320
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.27 E-value=1.8e-06 Score=64.94 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=36.8
Q ss_pred ceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001039 1136 WQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1174 (1179)
Q Consensus 1136 ~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWd 1174 (1179)
|++..++.+|.+.|++++|+|++++|++|+.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467888999999999999999999999999999999997
No 321
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.27 E-value=0.00053 Score=83.39 Aligned_cols=189 Identities=14% Similarity=0.192 Sum_probs=121.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeecCCC------cE--EEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCC
Q 001039 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDA------QV--SCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCS 964 (1179)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~------~V--~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~ 964 (1179)
+..++.++.++.+...|..+|+.+..+..... .+ ..+...+++.++.++.+|.|..+|.++|+.+.......
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 55677788889999999999998887754332 01 11122233788899999999999999999988875432
Q ss_pred Cc--EEEEEEcC--CCCEEEEEe---------CCCeEEEEeCCCCceeEEeecCCC--------------------CeE-
Q 001039 965 SA--VLCMEYDD--STGILAAGG---------RDAVANIWDIRAGRQMHKFLGHTK--------------------WIR- 1010 (1179)
Q Consensus 965 ~~--v~~l~~sp--~~~~l~sgs---------~dg~I~iwD~~~~~~~~~~~~~~~--------------------~I~- 1010 (1179)
.. -..+.-+| .+..++.++ .+|.+..+|..+|+.+.++..... .+.
T Consensus 141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~ 220 (488)
T cd00216 141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA 220 (488)
T ss_pred CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC
Confidence 21 00111111 124455554 368899999999998877643211 111
Q ss_pred EEEEc--CCEEEEEeCCC------------------cEEEEEccCCeeeEEeecCCcCE------EEEEEe----cCCC-
Q 001039 1011 SIRMD--RDTVITGSDDW------------------TARMWSISRGTCDAVLACHAGPV------QCVEYS----SSDR- 1059 (1179)
Q Consensus 1011 sl~~~--~~~l~sgs~dg------------------~I~iwd~~~~~~~~~~~~h~~~V------~~l~~s----pdg~- 1059 (1179)
+.+++ .+.++.++.++ .|.-+|.++|+.....+.-.... ....+. -+|.
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence 22333 46788887665 79999999999988765211111 011111 1343
Q ss_pred --EEEEEeCCCcEEEEEcCCCCcc
Q 001039 1060 --GIITGSSDGLLRFWENDDAGGI 1081 (1179)
Q Consensus 1060 --~l~sgs~Dg~I~iwd~~~~~~~ 1081 (1179)
.++.++.+|.+...|..+++..
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~ 324 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLI 324 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEe
Confidence 5778889999999999996533
No 322
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.25 E-value=1.2e-05 Score=84.92 Aligned_cols=213 Identities=14% Similarity=0.208 Sum_probs=136.0
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----eeEEeecCCC------------CeEEEEEc----CCEEEEE
Q 001039 964 SSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR-----QMHKFLGHTK------------WIRSIRMD----RDTVITG 1022 (1179)
Q Consensus 964 ~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~-----~~~~~~~~~~------------~I~sl~~~----~~~l~sg 1022 (1179)
...|+++.|...|.++++|...|.|.+|.-.... -...+++|.. .|..+.|- .+.++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4578999999999999999999999999765432 1233555542 46677772 2367777
Q ss_pred eCCCcEEEEEccCCee-------------------------------------e-----EEe-ecCCcCEEEEEEecCCC
Q 001039 1023 SDDWTARMWSISRGTC-------------------------------------D-----AVL-ACHAGPVQCVEYSSSDR 1059 (1179)
Q Consensus 1023 s~dg~I~iwd~~~~~~-------------------------------------~-----~~~-~~h~~~V~~l~~spdg~ 1059 (1179)
+.|.+|++|.+..... + +.. ..|.-.|+++.+..|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 8899999998753200 0 001 24666788999999988
Q ss_pred EEEEEeCCCcEEEEEcCCCCcceEEEeecccCce-----E--EEEecC-CCEEEEEECCCcEEEEeCCCCCcCcccCCCC
Q 001039 1060 GIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSA-----I--LSINAG-DHWLGIGAADNSMSLFHRPQERLGGFSGTGS 1131 (1179)
Q Consensus 1060 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~-----i--~sis~d-g~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~ 1131 (1179)
.++++ .|-.|.+|+++.....-.+..++.|... | ..++|. ...+...+..|.|++-|+....+..-...-.
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 88876 6778999998865433444444444421 2 223443 4566677788999999997543311110000
Q ss_pred ccccc-eeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001039 1132 KMSGW-QLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1132 ~~~~~-~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
....- .-..-+.+-...|.++.|+++|++|++-+. -+|++||+.-.
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 00000 000112233457889999999999987654 47999998753
No 323
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.24 E-value=0.002 Score=70.97 Aligned_cols=215 Identities=14% Similarity=0.090 Sum_probs=132.2
Q ss_pred EEEEeC--CCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCceeEEeec
Q 001039 928 CVRMLS--GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYD-DSTGILAAGGRDAVANIWDIRAGRQMHKFLG 1004 (1179)
Q Consensus 928 ~l~~s~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s-p~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~ 1004 (1179)
++.|.+ +..+++-...+.|..||..+++..... ... ...+++. +++. ++.+..+ .+.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~--~~G~~~~~~~g~-l~v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LPG--PNGMAFDRPDGR-LYVADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SSS--EEEEEEECTTSE-EEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cCC--CceEEEEccCCE-EEEEEcC-ceEEEecCCCcEEEEeec
Confidence 456663 444555557899999999888764322 222 6777887 5654 5555554 455669988865443332
Q ss_pred -----CCCCeEEEEEcCC--EEEEEeCC--------CcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEE-EEeCCC
Q 001039 1005 -----HTKWIRSIRMDRD--TVITGSDD--------WTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGII-TGSSDG 1068 (1179)
Q Consensus 1005 -----~~~~I~sl~~~~~--~l~sgs~d--------g~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~-sgs~Dg 1068 (1179)
.....+.++++++ ..++.... |.|..++.. ++...... .-...+.++|+|+++.|+ +-+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence 3456778888544 55554433 557777766 55433333 355678999999999776 556778
Q ss_pred cEEEEEcCCCCc-c---eEEEeecccCc--eEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeec
Q 001039 1069 LLRFWENDDAGG-I---KCVKNVTIHSS--AILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTP 1142 (1179)
Q Consensus 1069 ~I~iwd~~~~~~-~---~~~~~~~~h~~--~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~ 1142 (1179)
.|..++++.... . +.+..+..... .-+++..+|++.++....+.|.++|.. | +.+...
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~----------G------~~~~~i 220 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD----------G------KLLREI 220 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT----------S------CEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC----------c------cEEEEE
Confidence 899999875332 2 22222333321 225667889988888889999999975 2 222222
Q ss_pred CCCcccEEEEEE-cCCCCEEEEEe
Q 001039 1143 QKTVAVVRCIAS-DLERKRICSGG 1165 (1179)
Q Consensus 1143 ~~h~~~V~~v~f-spdg~~Lasgs 1165 (1179)
.-....+++++| .++.+.|...+
T Consensus 221 ~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 221 ELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp E-SSSSEEEEEEESTTSSEEEEEE
T ss_pred cCCCCCEEEEEEECCCCCEEEEEe
Confidence 222347899999 46766665443
No 324
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.23 E-value=0.002 Score=67.24 Aligned_cols=257 Identities=16% Similarity=0.143 Sum_probs=136.2
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE-EecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEE
Q 001039 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA-INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCV 929 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~-~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l 929 (1179)
|++++.|+..|.+++-+.+++........ ..+-.+.+ +.+++..+..|+.|++.+..|..+..++...+...+...+-
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~-~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVI-LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeee-hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 77899999999999999773322222222 22333343 57999999999999999999999998888766544433333
Q ss_pred EEeC-CCEEEEEEcCCeEEEEeCCCCeE--EEEeccCCCcEEE--EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec
Q 001039 930 RMLS-GERVLTASHDGTVKMWDVRTDTC--VATVGRCSSAVLC--MEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG 1004 (1179)
Q Consensus 930 ~~s~-~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~~~~v~~--l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~ 1004 (1179)
+..+ ...++.+...|.|.--..+.+.. .... ...+++.+ +. -+..+..++-||.+.-+| ..|+++.++.
T Consensus 142 ~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~-~~~~PiF~splc---v~~sv~i~~VdG~l~~f~-~sG~qvwr~~- 215 (354)
T KOG4649|consen 142 VIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAA-TRFGPIFASPLC---VGSSVIITTVDGVLTSFD-ESGRQVWRPA- 215 (354)
T ss_pred eecCCCceEEEEeccceEEEEccCCCCcceehhh-hcCCccccCcee---ccceEEEEEeccEEEEEc-CCCcEEEeec-
Confidence 3343 34455666666666555554421 1111 11122221 11 123355556677777776 5566555442
Q ss_pred CCCCeE-----------EEEE-cCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEe-c---CCCEEEEEeCCC
Q 001039 1005 HTKWIR-----------SIRM-DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYS-S---SDRGIITGSSDG 1068 (1179)
Q Consensus 1005 ~~~~I~-----------sl~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s-p---dg~~l~sgs~Dg 1068 (1179)
..++|. .+.+ +.+.+.+...-..-.+|..++|.........+ ...+++ + ..+++..++.||
T Consensus 216 t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~---l~F~~h~~~~S~~~ll~~~s~dg 292 (354)
T KOG4649|consen 216 TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPK---LRFDLHSPGISYPKLLRRSSGDG 292 (354)
T ss_pred CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcc---cceeccCCCCcchhhhhhhcCCC
Confidence 222222 2222 22222222222233466666664433322110 011111 1 145677788999
Q ss_pred cEEEEEcCCC--------CcceEEEeecccCceEEEEec--CCCEEEEEECCCcEEEEeCC
Q 001039 1069 LLRFWENDDA--------GGIKCVKNVTIHSSAILSINA--GDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1069 ~I~iwd~~~~--------~~~~~~~~~~~h~~~i~sis~--dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
++.|.-.+.. ++...+..+.-.. .|.+ +| -+..|..|+.|..++-||+.
T Consensus 293 kv~il~~~~sl~~~~s~~g~lq~~~~~el~~-eIFs-SPvii~grl~igcRDdYv~cldl~ 351 (354)
T KOG4649|consen 293 KVMILMTSKSLAEISSNGGELQNLEAIELSN-EIFS-SPVIIDGRLLIGCRDDYVRCLDLD 351 (354)
T ss_pred cEEEEEecccccccccCCCccceEEEeecCc-cccc-CCeEEccEEEEEEccCeEEEEecc
Confidence 9888744321 1122222111111 1111 12 13457788999999999986
No 325
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.22 E-value=2.8e-05 Score=82.12 Aligned_cols=239 Identities=14% Similarity=0.317 Sum_probs=153.9
Q ss_pred cCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCC---ceeEEEecccccc------------EEEE--
Q 001039 827 AGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRG---SELRATLKGHTRT------------VRAI-- 889 (1179)
Q Consensus 827 ~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~---~~~~~~l~~h~~~------------v~~~-- 889 (1179)
...|++|.|- ..|.+|++|...|.|.++.-+... .+....+++|... |.++
T Consensus 26 ad~ItaVefd------------~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w 93 (460)
T COG5170 26 ADKITAVEFD------------ETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEW 93 (460)
T ss_pred cceeeEEEec------------cccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheee
Confidence 4567888875 789999999999999999854222 1223446666532 2222
Q ss_pred -ec-CCCEEEEEeCCCcEEEEECCCCe-------------------------------------EE-----EEe-ecCCC
Q 001039 890 -NS-DRGKVVSGSDDQSVLVWDKQTSQ-------------------------------------LL-----EEL-KGHDA 924 (1179)
Q Consensus 890 -s~-d~~~l~sgs~dg~I~iwd~~t~~-------------------------------------~~-----~~~-~~h~~ 924 (1179)
.+ ....++..+.|.+|++|.+.... .+ +.+ ..|.-
T Consensus 94 ~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~y 173 (460)
T COG5170 94 FDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPY 173 (460)
T ss_pred ecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecccccee
Confidence 22 23567778889999999764320 00 111 34666
Q ss_pred cEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeE---EEEeccC-----CCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCC
Q 001039 925 QVSCVRMLSGERVLTASHDGTVKMWDVRTDTC---VATVGRC-----SSAVLCMEYDDS-TGILAAGGRDAVANIWDIRA 995 (1179)
Q Consensus 925 ~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~~-----~~~v~~l~~sp~-~~~l~sgs~dg~I~iwD~~~ 995 (1179)
.+.++.+..+...+..+.|=.|.+|++.-... +..++.| ...|++..|+|. .+.+.-.++.|.|++-|+|.
T Consensus 174 hiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq 253 (460)
T COG5170 174 HINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ 253 (460)
T ss_pred EeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence 67888888655555666788999999864322 2223333 235888999994 45666777889999999985
Q ss_pred Cce------eEE----------eecCCCCeEEEEEcCC-EEEEEeCCCcEEEEEccCC-eeeEEeecCC-----------
Q 001039 996 GRQ------MHK----------FLGHTKWIRSIRMDRD-TVITGSDDWTARMWSISRG-TCDAVLACHA----------- 1046 (1179)
Q Consensus 996 ~~~------~~~----------~~~~~~~I~sl~~~~~-~l~sgs~dg~I~iwd~~~~-~~~~~~~~h~----------- 1046 (1179)
... +.. +.+-...|..+.|+++ .++.+-.=-+|++||++.. .++.++.-|.
T Consensus 254 ~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YE 333 (460)
T COG5170 254 SALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYE 333 (460)
T ss_pred hhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhh
Confidence 321 111 1122346677778544 3333334568999999764 4566654432
Q ss_pred -cCE---EEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1047 -GPV---QCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1047 -~~V---~~l~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
..| ..+.||.|.+.+.+|+..+..-++-..+
T Consensus 334 nDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 334 NDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred ccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 223 3578899999999999888888886554
No 326
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.19 E-value=3.7e-06 Score=90.15 Aligned_cols=138 Identities=14% Similarity=0.273 Sum_probs=110.1
Q ss_pred EEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----ceeEEeecCCCCeEEE
Q 001039 938 LTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG-----RQMHKFLGHTKWIRSI 1012 (1179)
Q Consensus 938 ~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~-----~~~~~~~~~~~~I~sl 1012 (1179)
++.+.+..|-+-|+++|... .+ ...+.|.++.|...++++..|+.+|.|..+|++.+ .+...+ -|...|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SF-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeeccccc-cc-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence 56667788899999887543 23 25778999999999999999999999999999875 333333 678888877
Q ss_pred EE---cCCEEEEEeCCCcEEEEEccCCee---eEEeecCCcCEEE--EEEecCCCEEEEEeCCCcEEEEEcCCC
Q 001039 1013 RM---DRDTVITGSDDWTARMWSISRGTC---DAVLACHAGPVQC--VEYSSSDRGIITGSSDGLLRFWENDDA 1078 (1179)
Q Consensus 1013 ~~---~~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~h~~~V~~--l~~spdg~~l~sgs~Dg~I~iwd~~~~ 1078 (1179)
.. +...+++.+.+|+|++||++--++ +..+.+|.+.-.- +...+....+++++.|-..+||.++++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccC
Confidence 64 677999999999999999987776 8888888654333 344667788999999999999999984
No 327
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.17 E-value=9e-05 Score=87.61 Aligned_cols=395 Identities=10% Similarity=0.100 Sum_probs=205.7
Q ss_pred ccccCcccccCCCCCCCC---CCCCCCcccccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCC
Q 001039 738 GQSSLSNGMPSPLSKDAT---NDDQQPAEASGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAG 812 (1179)
Q Consensus 738 ~~~~~~~~~fSP~g~~~~---~~~~~~~~~~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~ 812 (1179)
.+|+-.++-|||....+. .+.|.|.+-..-.-.+.+++|.|.--.+|.|-.. +.+|...+.+
T Consensus 26 sePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e------------- 92 (1416)
T KOG3617|consen 26 SEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE------------- 92 (1416)
T ss_pred CCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCce-------------
Confidence 445555544898765221 1333333221111223447999999888888776 9999987665
Q ss_pred CcccccceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCce----------------eE
Q 001039 813 GKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSE----------------LR 876 (1179)
Q Consensus 813 ~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~----------------~~ 876 (1179)
.-..-..|..+|..+.|| ++|+.++|+..-|.|.+|.....+.- ..
T Consensus 93 ------~htv~~th~a~i~~l~wS------------~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~c 154 (1416)
T KOG3617|consen 93 ------THTVVETHPAPIQGLDWS------------HDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWC 154 (1416)
T ss_pred ------eeeeccCCCCCceeEEec------------CCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEE
Confidence 334556799999999998 89999999999999999986521110 00
Q ss_pred EEec---------------cccccEE------------EE----ecCCCEEEEEeCCCcEEEEECCCCeEEEE-------
Q 001039 877 ATLK---------------GHTRTVR------------AI----NSDRGKVVSGSDDQSVLVWDKQTSQLLEE------- 918 (1179)
Q Consensus 877 ~~l~---------------~h~~~v~------------~~----s~d~~~l~sgs~dg~I~iwd~~t~~~~~~------- 918 (1179)
..+. |....+- +. .++|..++.++.+|+|+-.|-. |++...
T Consensus 155 fRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~-g~~~~V~k~dS~v 233 (1416)
T KOG3617|consen 155 FRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQN-GRQRTVHKLDSEV 233 (1416)
T ss_pred EecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCC-CcEEEEEEccchH
Confidence 0110 1111110 01 3677888899999998877632 110000
Q ss_pred --------------------------------------ee---------------------------cCCCcEEEEEEe-
Q 001039 919 --------------------------------------LK---------------------------GHDAQVSCVRML- 932 (1179)
Q Consensus 919 --------------------------------------~~---------------------------~h~~~V~~l~~s- 932 (1179)
+. .....+.|+++.
T Consensus 234 QmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~ 313 (1416)
T KOG3617|consen 234 QMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGE 313 (1416)
T ss_pred HHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEec
Confidence 00 012457888888
Q ss_pred CCCEEEEEEcCCeEEEEeCCCC-------eEEEEec---cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC------C
Q 001039 933 SGERVLTASHDGTVKMWDVRTD-------TCVATVG---RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRA------G 996 (1179)
Q Consensus 933 ~~~~l~sgs~dg~I~iwd~~~~-------~~~~~~~---~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~------~ 996 (1179)
.+..++.|...|.+.+|--... .-..++. ...+.|+.+.|.|-.+.+++-+.... .+..-+. +
T Consensus 314 ~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~v-~ll~E~~l~~~h~~ 392 (1416)
T KOG3617|consen 314 KEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEEDV-VLLGENSLTVKHRG 392 (1416)
T ss_pred cceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhhhe-eeeccCchHHHHhh
Confidence 5777888888999999953221 2233333 34568999999996665555443322 2222110 0
Q ss_pred ce------------eEEeecCC------CCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEee--cCCcCEEEEEEec
Q 001039 997 RQ------------MHKFLGHT------KWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLA--CHAGPVQCVEYSS 1056 (1179)
Q Consensus 997 ~~------------~~~~~~~~------~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~sp 1056 (1179)
+. .+.+.|.. -++..++.....++. ....+|..||+.+........ ...-..++++...
T Consensus 393 ~~~A~q~ss~S~~L~hc~sGv~~~l~~~~~~~gi~l~e~~lvv-wNgr~v~~y~lq~SG~la~~~~~tF~cet~~la~~n 471 (1416)
T KOG3617|consen 393 KMAAIQTSSNSFTLLHCTSGVSQDLKLSIPSAGICLGEKQLVV-WNGRTVVTYDLQTSGSLATIQCTTFSCETTSLAIVN 471 (1416)
T ss_pred hhHHhhhcCCceEEEeeccchhhhhhhccchhhheeccceEEE-EcCceEEEEEecccchhHHHhhhhhccccchHhHhh
Confidence 00 00111100 012222223333332 234466666664321111111 0111122222222
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccc
Q 001039 1057 SDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGW 1136 (1179)
Q Consensus 1057 dg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~ 1136 (1179)
.+....++.+ |.+..+.. ..+....+..-.+.+.-+.-.|.+++++...+.++-+|+...........
T Consensus 472 -qN~ycies~~--Vfvrt~qG--tv~q~i~~seiEg~~~~ldi~g~~l~v~t~~~~~k~~dvsr~e~ka~~~~------- 539 (1416)
T KOG3617|consen 472 -QNLYCIESDK--VFVRTLQG--TVRQEISLSEIEGVVVLLDIMGELLIVQTVSTVAKRLDVSRAELKAVSYF------- 539 (1416)
T ss_pred -cceEEeccCc--EEEEecch--hhhhhccchhccCceehhhhccceeEEeehHHHHHHhhhhhhcccccccc-------
Confidence 2223333333 44443332 11222223333445555677889999999988888888875544332221
Q ss_pred eeeeecCCCcccEEEEEEcCCCCE---EEEEeC---CCcEEEEECCCC
Q 001039 1137 QLYRTPQKTVAVVRCIASDLERKR---ICSGGR---NGLLRLWEATIN 1178 (1179)
Q Consensus 1137 ~~~~~~~~h~~~V~~v~fspdg~~---Lasgs~---Dg~I~vWdv~tg 1178 (1179)
...+......+.+..+..+..|.. +++... =.++.+||++++
T Consensus 540 ~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s 587 (1416)
T KOG3617|consen 540 SSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQS 587 (1416)
T ss_pred cccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchh
Confidence 111222233344555555554432 222221 246899998865
No 328
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.17 E-value=0.0024 Score=70.33 Aligned_cols=208 Identities=13% Similarity=0.100 Sum_probs=131.7
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE-EEecCCCEEEEEeCCCcEEEEECCCCeEEEEeec-----CC
Q 001039 850 DAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR-AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG-----HD 923 (1179)
Q Consensus 850 d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~-~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~-----h~ 923 (1179)
++.++++-...+.|..|+... +......+.+ +.. .+...+..++.+..++ +.++|..+++....... ..
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~-~~~~~~~~~~---~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~ 85 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDT-GEVEVIDLPG---PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPF 85 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTT-TEEEEEESSS---EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCT
T ss_pred CCEEEEEEcCCCEEEEEECCC-CeEEEEecCC---CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCccc
Confidence 677778877899999999762 2222222222 333 3452446666666654 55669998866544432 34
Q ss_pred CcEEEEEEe-CCCEEEEEEcC--------CeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEeC
Q 001039 924 AQVSCVRML-SGERVLTASHD--------GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILA-AGGRDAVANIWDI 993 (1179)
Q Consensus 924 ~~V~~l~~s-~~~~l~sgs~d--------g~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~-sgs~dg~I~iwD~ 993 (1179)
...+.+++. +|+..++.... |.|..++.. ++..... ..-.....++|+|+++.|+ +-+..+.|..+|+
T Consensus 86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~ 163 (246)
T PF08450_consen 86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDL 163 (246)
T ss_dssp EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccceeEEEec
Confidence 567888888 55555554433 567778877 5544433 3345678999999999776 4556788999998
Q ss_pred CCCce-e---EEe---ecCCCCeEEEEEc--CCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEe-cCCCEEEE
Q 001039 994 RAGRQ-M---HKF---LGHTKWIRSIRMD--RDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYS-SSDRGIIT 1063 (1179)
Q Consensus 994 ~~~~~-~---~~~---~~~~~~I~sl~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~s-pdg~~l~s 1063 (1179)
..... + ..+ ....+..-.++++ +++.++....+.|.++|.+ |+.+..+......+++++|. ++.+.|+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 164 DADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp ETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred cccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence 63221 1 122 2222346778885 4577777788999999977 88888887666689999994 56666654
Q ss_pred Ee
Q 001039 1064 GS 1065 (1179)
Q Consensus 1064 gs 1065 (1179)
.+
T Consensus 243 Tt 244 (246)
T PF08450_consen 243 TT 244 (246)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 329
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.00031 Score=84.26 Aligned_cols=191 Identities=18% Similarity=0.312 Sum_probs=132.2
Q ss_pred cEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCc-EEEEEEeCC-CEEEEEEcCC-----eEEEEeCCCC---
Q 001039 885 TVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQ-VSCVRMLSG-ERVLTASHDG-----TVKMWDVRTD--- 954 (1179)
Q Consensus 885 ~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~-V~~l~~s~~-~~l~sgs~dg-----~I~iwd~~~~--- 954 (1179)
.+.++++.+..++.|+.+|.|.+.+ .+-+.++.++.+... |..+...++ +.+++.+.|+ .+++||++.-
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 7889999999999999999988877 334555778877777 444443344 5777777665 4899998643
Q ss_pred ---eEE---EEe--c--cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC----CCceeEEeecCCCCeEEEEE--cCCE
Q 001039 955 ---TCV---ATV--G--RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR----AGRQMHKFLGHTKWIRSIRM--DRDT 1018 (1179)
Q Consensus 955 ---~~~---~~~--~--~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~----~~~~~~~~~~~~~~I~sl~~--~~~~ 1018 (1179)
.++ +.+ . ....++.+++.+.+-+.+|+|-.+|.|..+.-. .|....-......+|+.+++ ++..
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 233 111 1 135678999999999999999999999988522 12222222234568999998 4444
Q ss_pred EEEEeCCCcEEEEEccCCee-eEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1019 VITGSDDWTARMWSISRGTC-DAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1019 l~sgs~dg~I~iwd~~~~~~-~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
++-......|.+|.+....+ ...+..|...++|..+++....+++++.. .+.+||.+.
T Consensus 186 ~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~ 244 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDSDG 244 (933)
T ss_pred eEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcCCC
Confidence 23333345789999875442 44577788899999998866656666544 499998875
No 330
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.12 E-value=0.0002 Score=88.96 Aligned_cols=238 Identities=12% Similarity=0.112 Sum_probs=141.9
Q ss_pred CCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 001039 923 DAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHK 1001 (1179)
Q Consensus 923 ~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~ 1001 (1179)
+..|.++.|. +++.++.+..+|.|.+-|..+.... ....-.+.|.+++|+||+.+++..+..+++.+-+ .+..++..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAE 145 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhc
Confidence 3578888888 7888999999999999988776532 2334578899999999999999998877776543 33333322
Q ss_pred eec-----CCCCeEEEEEcCC-EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEe-----CCCcE
Q 001039 1002 FLG-----HTKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS-----SDGLL 1070 (1179)
Q Consensus 1002 ~~~-----~~~~I~sl~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs-----~Dg~I 1070 (1179)
..- ..+....+-|... .=+-|+ .|.....+..............+.=++++|--||+++++.. ....|
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred cccccccccccccceecccccceeeecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 111 1112222333211 111111 11111111100000000001222345789999999998843 33789
Q ss_pred EEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEE---CCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcc
Q 001039 1071 RFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGA---ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVA 1147 (1179)
Q Consensus 1071 ~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs---~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~ 1147 (1179)
++||.+. .+..............++-|.|.++|+-. .|+.|.+|...+-+ .| ...-.......
T Consensus 225 rV~drEg--~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~------hg------~f~l~~p~de~ 290 (1265)
T KOG1920|consen 225 RVYDREG--ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR------HG------EFVLPFPLDEK 290 (1265)
T ss_pred EEecccc--hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc------cc------ccccCCccccc
Confidence 9999872 23333333334455677789999998753 46689999876432 11 11111222333
Q ss_pred cEEEEEEcCCCCEEEE---EeCCCcEEEEECCC
Q 001039 1148 VVRCIASDLERKRICS---GGRNGLLRLWEATI 1177 (1179)
Q Consensus 1148 ~V~~v~fspdg~~Las---gs~Dg~I~vWdv~t 1177 (1179)
.|..++|+.++..||. +.....|++|-+.+
T Consensus 291 ~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 291 EVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred chheeeecCCCCceeeeecccccceEEEEEecC
Confidence 4999999999999988 55555699998764
No 331
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=5.9e-05 Score=83.74 Aligned_cols=244 Identities=14% Similarity=0.123 Sum_probs=165.2
Q ss_pred ceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccc
Q 001039 770 SWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGD 847 (1179)
Q Consensus 770 ~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~ 847 (1179)
.++.-.|-.-.+++.+++-| ++.|.-..-. .-+-++.++.|-+.|.+++.+
T Consensus 10 d~i~hv~~tka~fiiqASlDGh~KFWkKs~is----------------GvEfVKhFraHL~~I~sl~~S----------- 62 (558)
T KOG0882|consen 10 DVITHVFPTKAKFIIQASLDGHKKFWKKSRIS----------------GVEFVKHFRAHLGVILSLAVS----------- 62 (558)
T ss_pred ceeeeEeeehhheEEeeecchhhhhcCCCCcc----------------ceeehhhhHHHHHHHHhhhcc-----------
Confidence 33333455556788888888 9999644211 011566788899999999887
Q ss_pred cCCCCEEEEEeC-CCcEEEEcCCCCCceeEEEeccccccEEEEecCCC---EEE-EEeCCCcEEEEECCCCe--EEEEee
Q 001039 848 REDAGFFISGST-DCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRG---KVV-SGSDDQSVLVWDKQTSQ--LLEELK 920 (1179)
Q Consensus 848 s~d~~~Lasgs~-Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~---~l~-sgs~dg~I~iwd~~t~~--~~~~~~ 920 (1179)
-|+.++.|++. |..++++|+......-...+..-.+.+..+...|. .++ +.-.+|.+.++|-...- ....-.
T Consensus 63 -~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk 141 (558)
T KOG0882|consen 63 -YDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK 141 (558)
T ss_pred -ccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc
Confidence 78999999887 99999999873333222333344555555544442 233 33467899999975433 333445
Q ss_pred cCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCC------CeEEEEe---------ccCCCcEEEEEEcCCCCEEEEEeC
Q 001039 921 GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRT------DTCVATV---------GRCSSAVLCMEYDDSTGILAAGGR 984 (1179)
Q Consensus 921 ~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~------~~~~~~~---------~~~~~~v~~l~~sp~~~~l~sgs~ 984 (1179)
-|..+|.++.+. .++.+++....|.|.-|.... ++....+ ........++.|+|+|..+.+-+.
T Consensus 142 lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~ 221 (558)
T KOG0882|consen 142 LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP 221 (558)
T ss_pred cccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc
Confidence 689999999998 578888998999999998763 1111111 223556789999999999999999
Q ss_pred CCeEEEEeCCCCceeEEeec--------------------------------CCC-CeEEEEE--cCCEEEEEeCCCcEE
Q 001039 985 DAVANIWDIRAGRQMHKFLG--------------------------------HTK-WIRSIRM--DRDTVITGSDDWTAR 1029 (1179)
Q Consensus 985 dg~I~iwD~~~~~~~~~~~~--------------------------------~~~-~I~sl~~--~~~~l~sgs~dg~I~ 1029 (1179)
|..|++++.++|+.++.+.. |.. .-+.+.| ++++++-|+-=| |+
T Consensus 222 DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ik 300 (558)
T KOG0882|consen 222 DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IK 300 (558)
T ss_pred ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EE
Confidence 99999999999877654421 111 1122334 355777666544 78
Q ss_pred EEEccCCeeeEEe
Q 001039 1030 MWSISRGTCDAVL 1042 (1179)
Q Consensus 1030 iwd~~~~~~~~~~ 1042 (1179)
+.++.++++.+.+
T Consensus 301 vin~~tn~v~ri~ 313 (558)
T KOG0882|consen 301 VINLDTNTVVRIL 313 (558)
T ss_pred EEEeecCeEEEEe
Confidence 8888888877654
No 332
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.03 E-value=1.5e-05 Score=59.89 Aligned_cols=39 Identities=28% Similarity=0.687 Sum_probs=36.9
Q ss_pred CeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001039 1036 GTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074 (1179)
Q Consensus 1036 ~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd 1074 (1179)
++++.++.+|.+.|++++|+|+++++++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 333
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=2.4e-06 Score=100.87 Aligned_cols=215 Identities=15% Similarity=0.251 Sum_probs=146.3
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE--ecCCCEE
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI--NSDRGKV 896 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~--s~d~~~l 896 (1179)
.+++++.|+..-+|++|+ .+.++|+.|+-.|.|+++++. .+.......+|..+++-+ +.||..+
T Consensus 1093 ~w~~frd~~~~fTc~afs------------~~~~hL~vG~~~Geik~~nv~--sG~~e~s~ncH~SavT~vePs~dgs~~ 1158 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFS------------GGTNHLAVGSHAGEIKIFNVS--SGSMEESVNCHQSAVTLVEPSVDGSTQ 1158 (1516)
T ss_pred cchhhhccccceeeEEee------------cCCceEEeeeccceEEEEEcc--CccccccccccccccccccccCCccee
Confidence 456677778788888887 889999999999999999987 444556788999999988 5678877
Q ss_pred EEEeCCC--cEEEEECCC-CeEEEEeecCCCcEEEEEEeCCC-EEEEEEcCCeEEEEeCCCCeEEEEec----cCCCcEE
Q 001039 897 VSGSDDQ--SVLVWDKQT-SQLLEELKGHDAQVSCVRMLSGE-RVLTASHDGTVKMWDVRTDTCVATVG----RCSSAVL 968 (1179)
Q Consensus 897 ~sgs~dg--~I~iwd~~t-~~~~~~~~~h~~~V~~l~~s~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~----~~~~~v~ 968 (1179)
++.+.-. -..+|++.+ +....++. .-.++.|++.. .-+.|+......+||+.++..+.++- +....-.
T Consensus 1159 Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n 1234 (1516)
T KOG1832|consen 1159 LTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNN 1234 (1516)
T ss_pred eeeccccCchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcc
Confidence 7665433 467899864 44445554 34577787432 23345555678999999998776632 2233347
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeE-EEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCc
Q 001039 969 CMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIR-SIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAG 1047 (1179)
Q Consensus 969 ~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~-sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~ 1047 (1179)
+..|+|+..+++ +|| .+||++..+.++.+......+. .+..+++.++..++ |||+++.+.++....-
T Consensus 1235 ~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~L-- 1302 (1516)
T KOG1832|consen 1235 LAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSL-- 1302 (1516)
T ss_pred ccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeech-----hhhhHHHHHHhcCccc--
Confidence 889999988776 455 4899999887777643332111 12235556666553 8999998776655422
Q ss_pred CEEEEEEecCCCEEEE
Q 001039 1048 PVQCVEYSSSDRGIIT 1063 (1179)
Q Consensus 1048 ~V~~l~~spdg~~l~s 1063 (1179)
.-..+.|+..|..+..
T Consensus 1303 dqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1303 DQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred cceEEEeccCccchhh
Confidence 2245677777766543
No 334
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.00039 Score=82.94 Aligned_cols=178 Identities=16% Similarity=0.224 Sum_probs=122.5
Q ss_pred cEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec
Q 001039 925 QVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG 1004 (1179)
Q Consensus 925 ~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~ 1004 (1179)
.++|++++ +..++-|+.+|.|++++.... . .+...|... +.+|.++++|+.||.|.|..+-+.+...++ .
T Consensus 41 ~is~~av~-~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~-d 110 (846)
T KOG2066|consen 41 AISCCAVH-DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY-D 110 (846)
T ss_pred HHHHHHhh-cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE-e
Confidence 44555544 678999999999999997543 3 333333332 678999999999999999999888777665 4
Q ss_pred CCCCeEEEEEcCC-------EEEEEeCCCcEEEEEccC--CeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEc
Q 001039 1005 HTKWIRSIRMDRD-------TVITGSDDWTARMWSISR--GTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEN 1075 (1179)
Q Consensus 1005 ~~~~I~sl~~~~~-------~l~sgs~dg~I~iwd~~~--~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~ 1075 (1179)
-..++.+++++|+ .+++|+.-| +.++.-+- .+....+....++|.++.|. |+++|=++.+| |++||+
T Consensus 111 f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~ 186 (846)
T KOG2066|consen 111 FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDT 186 (846)
T ss_pred cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEEec
Confidence 4567889999876 789999888 77775321 11112455567899999997 88888888887 999999
Q ss_pred CCCCcceEEEeecccCceE------EEEec-CCCEEEEEECCCcEEEEeCCC
Q 001039 1076 DDAGGIKCVKNVTIHSSAI------LSINA-GDHWLGIGAADNSMSLFHRPQ 1120 (1179)
Q Consensus 1076 ~~~~~~~~~~~~~~h~~~i------~sis~-dg~~lasgs~Dg~I~iwd~~~ 1120 (1179)
.+. +.+..+......+ ..+.+ +...|+.| +..+|+|..+..
T Consensus 187 ~~~---~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 187 PTR---QRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG-WGDSVKICSIKK 234 (846)
T ss_pred ccc---ceeeccCCCCCCCCcccCCCceEecCCCeEEEe-cCCeEEEEEEec
Confidence 884 3333333222221 11222 34455554 556899999873
No 335
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.02 E-value=0.0027 Score=69.87 Aligned_cols=189 Identities=18% Similarity=0.184 Sum_probs=127.1
Q ss_pred EEec-CCCEEEEEeCCCc-EEEEECCCCeEEEEeecCCCcEE--EEEEe-CCCEEEEEEc-----CCeEEEEeCC-CCeE
Q 001039 888 AINS-DRGKVVSGSDDQS-VLVWDKQTSQLLEELKGHDAQVS--CVRML-SGERVLTASH-----DGTVKMWDVR-TDTC 956 (1179)
Q Consensus 888 ~~s~-d~~~l~sgs~dg~-I~iwd~~t~~~~~~~~~h~~~V~--~l~~s-~~~~l~sgs~-----dg~I~iwd~~-~~~~ 956 (1179)
+.+| .+..++.+-.-|+ ..+||..+++....+....+.-. .-.|+ +|++|++.-. .|.|-|||.. +-+.
T Consensus 11 a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~r 90 (305)
T PF07433_consen 11 AAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRR 90 (305)
T ss_pred eeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEE
Confidence 3456 4455566655554 67899999998877765443321 34566 7888887643 5889999998 6677
Q ss_pred EEEeccCCCcEEEEEEcCCCCEEEEEe------------------CCCeEEEEeCCCCceeEEee----cCCCCeEEEEE
Q 001039 957 VATVGRCSSAVLCMEYDDSTGILAAGG------------------RDAVANIWDIRAGRQMHKFL----GHTKWIRSIRM 1014 (1179)
Q Consensus 957 ~~~~~~~~~~v~~l~~sp~~~~l~sgs------------------~dg~I~iwD~~~~~~~~~~~----~~~~~I~sl~~ 1014 (1179)
+..+..+.-.-..+.+.|||+.|+++. .+..+...|..+|+.+.+.. .|...|.-+++
T Consensus 91 i~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~ 170 (305)
T PF07433_consen 91 IGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAV 170 (305)
T ss_pred EeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEe
Confidence 788877777777888999998887763 23457777888888877633 37778998888
Q ss_pred cCC-EEEEEe-CCCc-------EEEEEccCCeeeEEee-------cCCcCEEEEEEecCCCEEEEEe-CCCcEEEEEcCC
Q 001039 1015 DRD-TVITGS-DDWT-------ARMWSISRGTCDAVLA-------CHAGPVQCVEYSSSDRGIITGS-SDGLLRFWENDD 1077 (1179)
Q Consensus 1015 ~~~-~l~sgs-~dg~-------I~iwd~~~~~~~~~~~-------~h~~~V~~l~~spdg~~l~sgs-~Dg~I~iwd~~~ 1077 (1179)
+++ .++.|. ..|. |-+++ .++....+. .-.+.+-+|++++++..+++.+ ..|.+.+||..+
T Consensus 171 ~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t 248 (305)
T PF07433_consen 171 DGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT 248 (305)
T ss_pred cCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence 665 333332 2221 23333 222222222 2356789999999999886655 677899999998
Q ss_pred C
Q 001039 1078 A 1078 (1179)
Q Consensus 1078 ~ 1078 (1179)
+
T Consensus 249 g 249 (305)
T PF07433_consen 249 G 249 (305)
T ss_pred C
Confidence 3
No 336
>PF08616 SPA: Stabilization of polarity axis
Probab=97.98 E-value=2.8e-05 Score=73.34 Aligned_cols=104 Identities=27% Similarity=0.403 Sum_probs=76.0
Q ss_pred chHHHhccCChhhHHHHHHHHhccccEEEEeCCcch--HHHHHHHHHHccccc---CC-CceeecccchhhhhhccCCcc
Q 001039 206 SFQPLVQLLDVDNLITLFTAVLLERRILLRSNKYSL--LTLVSEAICHLIYPF---RW-QHVYIPLLFFSGVDYIDAPTP 279 (1179)
Q Consensus 206 ~~~~l~~~l~~~~~~~l~~~~L~E~~il~~s~~~~~--ls~~~~al~~ll~P~---~w-~~~~IP~lP~~l~~~l~aP~P 279 (1179)
++..+++.++++ ++.|+.++|+++||++.|.+++. ++.++.|+.+|+.|. +. ..-+-|....+.++-+.+..-
T Consensus 3 ~l~~~~~~f~~~-i~~L~~alL~~krivv~s~~~~~~~~s~~Vlal~~Li~p~~~~~~~~~~~~PY~~i~~~~~l~~~~~ 81 (113)
T PF08616_consen 3 SLLHLFQQFGPE-IILLWEALLLGKRIVVYSPSPSAGEVSEFVLALCSLISPGQDLRYFSNRYFPYFTISDLDELKSCPG 81 (113)
T ss_pred cHHHHHHhhhhH-HHHHHHHHHhCCCEEEECCCCCHHHHHHHHHHHHHHHCcccchhcccccccceeechhhhhhccCCC
Confidence 455666666654 66689999999999999999999 999999999999992 22 223355555555777777777
Q ss_pred eEEeccCCCCccccCCCcEEEEEcCCCeeeCC
Q 001039 280 YMMGLHSGVDTSNLAMDGVVVVDLEYNRICTT 311 (1179)
Q Consensus 280 ~iiGi~~~~~~~~~~~~~~~~vdlD~~~i~~~ 311 (1179)
||+|+.........+.= =+++|||+++|...
T Consensus 82 ~I~GvtNP~F~~~~~~w-D~~~~l~~~~i~~s 112 (113)
T PF08616_consen 82 YIAGVTNPIFEKRLDWW-DHLCDLDTGEITVS 112 (113)
T ss_pred EEEEeCCHHHHhccccC-CEEEEcCCCeEEec
Confidence 99999765422222211 27899999999754
No 337
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.97 E-value=4.3e-06 Score=98.76 Aligned_cols=195 Identities=15% Similarity=0.240 Sum_probs=136.4
Q ss_pred ccCCcceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeeccccee
Q 001039 765 SGIGRSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVW 842 (1179)
Q Consensus 765 ~gh~~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~ 842 (1179)
..|....+|++||-+.+.++.|+-. |+++++.+|. ......+|.++|+-+.-+
T Consensus 1098 rd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-------------------~e~s~ncH~SavT~vePs------ 1152 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-------------------MEESVNCHQSAVTLVEPS------ 1152 (1516)
T ss_pred hccccceeeEEeecCCceEEeeeccceEEEEEccCcc-------------------cccccccccccccccccc------
Confidence 4577888999999999999999877 9999999998 345678899999999865
Q ss_pred ccccccCCCCEEEEEeCCC--cEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEee
Q 001039 843 DLVGDREDAGFFISGSTDC--LVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELK 920 (1179)
Q Consensus 843 ~~~~~s~d~~~Lasgs~Dg--~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~ 920 (1179)
.||..+++.+.-. -..+|+... .....+++.+.. ...|+.....-+.|+......+||++++..+.++-
T Consensus 1153 ------~dgs~~Ltsss~S~PlsaLW~~~s-~~~~~Hsf~ed~--~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tyl 1223 (1516)
T KOG1832|consen 1153 ------VDGSTQLTSSSSSSPLSALWDASS-TGGPRHSFDEDK--AVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYL 1223 (1516)
T ss_pred ------CCcceeeeeccccCchHHHhcccc-ccCccccccccc--eeehhhhHHHHHhcccccceEEEecccCcHHHHhc
Confidence 7888777665533 478999763 334444444322 22344433344455555678999999998766632
Q ss_pred ----cCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 001039 921 ----GHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG 996 (1179)
Q Consensus 921 ----~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~ 996 (1179)
+....-++..|++.+.++. +|| .+||++..+.++.+..... -..-.|+|+|..++.-+ .|||+++.
T Consensus 1224 t~~~~~~y~~n~a~FsP~D~LIl--ndG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS-----EIwD~RTF 1293 (1516)
T KOG1832|consen 1224 TDTVTSSYSNNLAHFSPCDTLIL--NDG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS-----EIWDMRTF 1293 (1516)
T ss_pred CcchhhhhhccccccCCCcceEe--eCc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec-----hhhhhHHH
Confidence 1222336777886555543 455 6899998887777755442 23346899999988866 49999998
Q ss_pred ceeEEee
Q 001039 997 RQMHKFL 1003 (1179)
Q Consensus 997 ~~~~~~~ 1003 (1179)
+.++...
T Consensus 1294 ~lLh~VP 1300 (1516)
T KOG1832|consen 1294 KLLHSVP 1300 (1516)
T ss_pred HHHhcCc
Confidence 8776653
No 338
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.97 E-value=0.0049 Score=67.87 Aligned_cols=213 Identities=14% Similarity=0.160 Sum_probs=138.5
Q ss_pred CCCEEEEEeCCCc-EEEEcCCCCCceeEEEeccccccEE----EEecCCCEEEEEe-----CCCcEEEEECC-CCeEEEE
Q 001039 850 DAGFFISGSTDCL-VKIWDPSLRGSELRATLKGHTRTVR----AINSDRGKVVSGS-----DDQSVLVWDKQ-TSQLLEE 918 (1179)
Q Consensus 850 d~~~Lasgs~Dg~-I~lWd~~~~~~~~~~~l~~h~~~v~----~~s~d~~~l~sgs-----~dg~I~iwd~~-t~~~~~~ 918 (1179)
++..++.+-.-|+ ..+||.. +......+....+.-. .||+||++|++.- ..|.|-|||.. +-+.+.+
T Consensus 16 ~~~avafaRRPG~~~~v~D~~--~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E 93 (305)
T PF07433_consen 16 RPEAVAFARRPGTFALVFDCR--TGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGE 93 (305)
T ss_pred CCeEEEEEeCCCcEEEEEEcC--CCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeE
Confidence 4556666666665 4677865 3334344444333332 6899999999874 35899999998 6677888
Q ss_pred eecCCCcEEEEEEe-CCCEEEEEE------------------cCCeEEEEeCCCCeEEEEe----ccCCCcEEEEEEcCC
Q 001039 919 LKGHDAQVSCVRML-SGERVLTAS------------------HDGTVKMWDVRTDTCVATV----GRCSSAVLCMEYDDS 975 (1179)
Q Consensus 919 ~~~h~~~V~~l~~s-~~~~l~sgs------------------~dg~I~iwd~~~~~~~~~~----~~~~~~v~~l~~sp~ 975 (1179)
+..|.-.-..+.+. ++..|+++. .+..+...|..+|+.+... ..|...+..++++++
T Consensus 94 ~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~ 173 (305)
T PF07433_consen 94 FPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGD 173 (305)
T ss_pred ecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCC
Confidence 88887777777777 555666652 2234666778888877663 236678999999999
Q ss_pred CCEEEEEeCCC-------eEEEEeCCCCceeEEee-------cCCCCeEEEEEcCC--EE-EEEeCCCcEEEEEccCCee
Q 001039 976 TGILAAGGRDA-------VANIWDIRAGRQMHKFL-------GHTKWIRSIRMDRD--TV-ITGSDDWTARMWSISRGTC 1038 (1179)
Q Consensus 976 ~~~l~sgs~dg-------~I~iwD~~~~~~~~~~~-------~~~~~I~sl~~~~~--~l-~sgs~dg~I~iwd~~~~~~ 1038 (1179)
|..++..-..| .+-+++- ++.+..+. .-.+.+-+|+++.+ .+ +++-..|.+.+||..++..
T Consensus 174 G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 174 GTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL 251 (305)
T ss_pred CcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE
Confidence 98766654433 2344433 33232222 23467889999654 45 4555678899999999998
Q ss_pred eEEeecCCcCEEEEEEecCCCEEEEEeCCCcE
Q 001039 1039 DAVLACHAGPVQCVEYSSSDRGIITGSSDGLL 1070 (1179)
Q Consensus 1039 ~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I 1070 (1179)
+....- ..+..++-.+++ ++++. ..|.+
T Consensus 252 ~~~~~l--~D~cGva~~~~~-f~~ss-G~G~~ 279 (305)
T PF07433_consen 252 LGSVPL--PDACGVAPTDDG-FLVSS-GQGQL 279 (305)
T ss_pred eecccc--CceeeeeecCCc-eEEeC-CCccE
Confidence 876642 345666666666 44444 44543
No 339
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.96 E-value=0.00066 Score=80.08 Aligned_cols=140 Identities=11% Similarity=0.165 Sum_probs=98.0
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEe-ecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEE----
Q 001039 886 VRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEEL-KGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVAT---- 959 (1179)
Q Consensus 886 v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~-~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~---- 959 (1179)
.+|++..+++++.|+..|.+++|+-..++....- .+..+.+.....+ ++.+++.|+..|.|.++-+..+.....
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence 4478899999999999999999997776654332 2333444445555 456677888889999998776432111
Q ss_pred --eccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----ceeEEeecCCCCeEEEEEcCCEEEEEeCC
Q 001039 960 --VGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG----RQMHKFLGHTKWIRSIRMDRDTVITGSDD 1025 (1179)
Q Consensus 960 --~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~----~~~~~~~~~~~~I~sl~~~~~~l~sgs~d 1025 (1179)
-+.|+..|++++|++++..+.+|...|.|..-.+.+. ...+.+....+.|..+.....++++++.-
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~ 189 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLT 189 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhh
Confidence 1246789999999999999999999999998887762 12233444556777777755554444433
No 340
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.00068 Score=81.45 Aligned_cols=195 Identities=9% Similarity=0.095 Sum_probs=130.0
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeEEEecccccc-EEEE--ecCCCEEEEEeCCCc-----EEEEECCCC------e
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRT-VRAI--NSDRGKVVSGSDDQS-----VLVWDKQTS------Q 914 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~-v~~~--s~d~~~l~sgs~dg~-----I~iwd~~t~------~ 914 (1179)
+.+..+|.|+.+|.|.+.+- +......++.+... |..+ ..+.++|++.+.|++ ++|||++.. +
T Consensus 33 s~~~~vvigt~~G~V~~Ln~---s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~ 109 (933)
T KOG2114|consen 33 SSTGSVVIGTADGRVVILNS---SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ 109 (933)
T ss_pred CCCceEEEeeccccEEEecc---cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence 77999999999999999883 45555777777777 4433 233367888777654 899998542 3
Q ss_pred EEE--Eeec-----CCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCC----CCeEEEEeccCCCcEEEEEEcCCCCEEEEE
Q 001039 915 LLE--ELKG-----HDAQVSCVRML-SGERVLTASHDGTVKMWDVR----TDTCVATVGRCSSAVLCMEYDDSTGILAAG 982 (1179)
Q Consensus 915 ~~~--~~~~-----h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~----~~~~~~~~~~~~~~v~~l~~sp~~~~l~sg 982 (1179)
++. .+.. ...++.+++.+ +-..+|+|-.+|.|..+.-+ .|....-......+|+.+++..+++.++-+
T Consensus 110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv 189 (933)
T KOG2114|consen 110 CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFV 189 (933)
T ss_pred eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEE
Confidence 331 1112 34668888888 67788999999999988522 122222223457899999999988873323
Q ss_pred eCCCeEEEEeCCCCce-eEEeecCCCCeEEEEEcCC-E-EEEEeCCCcEEEEEccCCeeeEEee-cCCc
Q 001039 983 GRDAVANIWDIRAGRQ-MHKFLGHTKWIRSIRMDRD-T-VITGSDDWTARMWSISRGTCDAVLA-CHAG 1047 (1179)
Q Consensus 983 s~dg~I~iwD~~~~~~-~~~~~~~~~~I~sl~~~~~-~-l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~ 1047 (1179)
.....|.+|.+....+ ...+..|.....|.++++. . +++++ +..+.+||.........+. +|..
T Consensus 190 ~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 190 ATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred EecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeE
Confidence 3346789999874332 3446677788888888543 3 44444 4569999987665555555 4443
No 341
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00039 Score=76.58 Aligned_cols=249 Identities=13% Similarity=0.142 Sum_probs=143.5
Q ss_pred EEEEECCCCeEEEEeecCCCcEEEEEEeC--CCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCC-CCEEEE
Q 001039 905 VLVWDKQTSQLLEELKGHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS-TGILAA 981 (1179)
Q Consensus 905 I~iwd~~t~~~~~~~~~h~~~V~~l~~s~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~-~~~l~s 981 (1179)
++..+..+.+....+.++...|..++|++ ...+..++.+.+|++.|+++..++..+..+ ..+++++|+-+ .+++.+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 56666555555666778889999999995 446889999999999999999998888666 78999999885 467888
Q ss_pred EeCCCeEEEEeCCCCcee-EEeec--CCCCeEEEEE--------cCCEEEEEeCCCcEEEEEccCC--eeeEEee-cCCc
Q 001039 982 GGRDAVANIWDIRAGRQM-HKFLG--HTKWIRSIRM--------DRDTVITGSDDWTARMWSISRG--TCDAVLA-CHAG 1047 (1179)
Q Consensus 982 gs~dg~I~iwD~~~~~~~-~~~~~--~~~~I~sl~~--------~~~~l~sgs~dg~I~iwd~~~~--~~~~~~~-~h~~ 1047 (1179)
|..+|.|.+||++..+-. ..+.+ ...+|..++. .+..++..+.+ +..|++.-. ....+.. +..+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCc
Confidence 889999999999976432 22222 2334555444 22344444433 455654321 1111111 1245
Q ss_pred CEEEEEEecCCCEEEEEe-C-----------------CCcEEEEEcCCCCcceEEEeecccC-ceEEEEecCCCEEE-EE
Q 001039 1048 PVQCVEYSSSDRGIITGS-S-----------------DGLLRFWENDDAGGIKCVKNVTIHS-SAILSINAGDHWLG-IG 1107 (1179)
Q Consensus 1048 ~V~~l~~spdg~~l~sgs-~-----------------Dg~I~iwd~~~~~~~~~~~~~~~h~-~~i~sis~dg~~la-sg 1107 (1179)
...++.+.+..+.++... . || -.||..+.+-- -.+.-+-++ ..+.+ .++.++++ +|
T Consensus 332 ~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG-~pVc~~r~~~~--Gs~~~kl~t~~ai~~-~~~nn~iv~~g 407 (463)
T KOG1645|consen 332 ICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDG-FPVCGKRRTYF--GSKQTKLSTTQAIRA-VEDNNYIVVVG 407 (463)
T ss_pred ceeeeeecCccceEEEEecCCCCCccceeeeeeeccccC-ceeeeeccccc--CCcccccccccceec-cccccEEEEec
Confidence 556666666444443332 2 12 12232221000 000000111 12222 23445444 56
Q ss_pred ECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcC-C-CCEEEEEeCCCcEEEEECCC
Q 001039 1108 AADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDL-E-RKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1108 s~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fsp-d-g~~Lasgs~Dg~I~vWdv~t 1177 (1179)
++.+.+.+||..+. +..+++. -..+|.+++... + +.+|+.-. |..++|+..++
T Consensus 408 d~tn~lil~D~~s~---------------evvQ~l~-~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 408 DSTNELILQDPHSF---------------EVVQTLA-LSEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred CCcceeEEeccchh---------------heeeecc-cCcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 66789999998743 2333332 225677777532 3 44666655 55688877653
No 342
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.91 E-value=0.031 Score=62.49 Aligned_cols=257 Identities=13% Similarity=0.086 Sum_probs=153.5
Q ss_pred CcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEE----------cCCeEEEEeCCCCeEEEEeccCCC------
Q 001039 903 QSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTAS----------HDGTVKMWDVRTDTCVATVGRCSS------ 965 (1179)
Q Consensus 903 g~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs----------~dg~I~iwd~~~~~~~~~~~~~~~------ 965 (1179)
+.+.++|.++++.+..+...-. ..+..+ +++.+++++ ..-.|.+||..+-.....+.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~--~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL--GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS--EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecccC--CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999998887764322 223445 666666542 234699999999887776532221
Q ss_pred -cEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEcc-CCeeeEE
Q 001039 966 -AVLCMEYDDSTGILAAGG--RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSIS-RGTCDAV 1041 (1179)
Q Consensus 966 -~v~~l~~sp~~~~l~sgs--~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~-~~~~~~~ 1041 (1179)
.....+++.+++++++.. -...|.+.|+..++.+.++.... ...-.-..++.+.+-|.||++.-..+. .|+....
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-EEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 123467888999888764 34579999999998887764332 222223345678899999999999887 4555432
Q ss_pred e----ecCCcC-EEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeec------------ccCceEEEEecCCCEE
Q 001039 1042 L----ACHAGP-VQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVT------------IHSSAILSINAGDHWL 1104 (1179)
Q Consensus 1042 ~----~~h~~~-V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~------------~h~~~i~sis~dg~~l 1104 (1179)
. .....+ +..-+++..+..++--+.+|.|+--|+.... .+....+. ...-.+.++++..+.|
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS-AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS-EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc-ccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 2 111222 2234555566666667889999888887643 33333322 1122346666655554
Q ss_pred EEEEC--------CC--cEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCC-EEEEE-eCCCcEEE
Q 001039 1105 GIGAA--------DN--SMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERK-RICSG-GRNGLLRL 1172 (1179)
Q Consensus 1105 asgs~--------Dg--~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~-~Lasg-s~Dg~I~v 1172 (1179)
.+--. |+ .|.++|+. ++ +.+.++.. ...+.+++.+.|.+ +|.+. ..++.+.+
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~---------t~------krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v 316 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLK---------TH------KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDV 316 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETT---------TT------EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEE
T ss_pred EEEecCCCCCCccCCceEEEEEECC---------CC------eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEE
Confidence 44221 22 35666766 33 22222221 12477899998876 56544 46899999
Q ss_pred EECCCCC
Q 001039 1173 WEATINI 1179 (1179)
Q Consensus 1173 Wdv~tg~ 1179 (1179)
||..||+
T Consensus 317 ~D~~tGk 323 (342)
T PF06433_consen 317 YDAATGK 323 (342)
T ss_dssp EETTT--
T ss_pred EeCcCCc
Confidence 9999986
No 343
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.90 E-value=0.0046 Score=77.28 Aligned_cols=269 Identities=8% Similarity=0.056 Sum_probs=149.5
Q ss_pred cCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEE
Q 001039 827 AGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVL 906 (1179)
Q Consensus 827 ~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~ 906 (1179)
.+.|.++.|. .+++-++.+..+|.|.+-|.+....+..... ...-...+++||+..++..+.++++.
T Consensus 68 d~~i~s~~fl------------~d~~~i~v~~~~G~iilvd~et~~~eivg~v-d~GI~aaswS~Dee~l~liT~~~tll 134 (1265)
T KOG1920|consen 68 DDEIVSVQFL------------ADTNSICVITALGDIILVDPETLELEIVGNV-DNGISAASWSPDEELLALITGRQTLL 134 (1265)
T ss_pred CcceEEEEEe------------cccceEEEEecCCcEEEEcccccceeeeeec-cCceEEEeecCCCcEEEEEeCCcEEE
Confidence 3689999997 7888888999999999998764333332222 22223346899999999999888886
Q ss_pred EEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeE-----EE-----EeccCCCcEEEEEEcCCC
Q 001039 907 VWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTC-----VA-----TVGRCSSAVLCMEYDDST 976 (1179)
Q Consensus 907 iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~-----~~-----~~~~~~~~v~~l~~sp~~ 976 (1179)
+-+ .+..++..-.-+. .-...+..+.+++...=.-+.-..|+. +. ......+.-+++.|--||
T Consensus 135 ~mT-~~f~~i~E~~L~~------d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg 207 (1265)
T KOG1920|consen 135 FMT-KDFEPIAEKPLDA------DDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG 207 (1265)
T ss_pred EEe-ccccchhcccccc------ccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC
Confidence 643 2233332211110 000122233333332111111111110 00 000122334679999999
Q ss_pred CEEEEE-----eCCCeEEEEeCCCCceeEEeecCCCCeEEEEEc--CCEEEEEe---CCCcEEEEEccCCeeeEE----e
Q 001039 977 GILAAG-----GRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGS---DDWTARMWSISRGTCDAV----L 1042 (1179)
Q Consensus 977 ~~l~sg-----s~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~--~~~l~sgs---~dg~I~iwd~~~~~~~~~----~ 1042 (1179)
.++++. .....|++||-. |..-..-....+.-.+++|. |..+++-. .|+.|.++. ++|-.... +
T Consensus 208 ~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~ 285 (1265)
T KOG1920|consen 208 EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPF 285 (1265)
T ss_pred cEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCC
Confidence 999883 233789999976 44332222233344567774 45665543 566799988 34433222 3
Q ss_pred ecCCcCEEEEEEecCCCEEEE---EeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecC-CCEEEEEECCCcEEEEeC
Q 001039 1043 ACHAGPVQCVEYSSSDRGIIT---GSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAG-DHWLGIGAADNSMSLFHR 1118 (1179)
Q Consensus 1043 ~~h~~~V~~l~~spdg~~l~s---gs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~d-g~~lasgs~Dg~I~iwd~ 1118 (1179)
......|..++|+.++..|++ ......|++|-+.+.. +-.-..+.......+.++|. ...+.+-..+|...++|.
T Consensus 286 p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh-WYLKq~l~~~~~~~~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 286 PLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH-WYLKQELQFSQKALLMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred cccccchheeeecCCCCceeeeecccccceEEEEEecCeE-EEEEEEEeccccccccccCCCceeEEEEecCCcEEEEEE
Confidence 333445999999999999987 4455569999887732 32333333344444455542 222333335555555544
No 344
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.88 E-value=0.017 Score=70.72 Aligned_cols=187 Identities=16% Similarity=0.152 Sum_probs=114.4
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeEEEecc--ccc--cE-------EEEecCCCEEEEEeCCCcEEEEECCCCeEEEEe
Q 001039 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKG--HTR--TV-------RAINSDRGKVVSGSDDQSVLVWDKQTSQLLEEL 919 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~--h~~--~v-------~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~ 919 (1179)
+..++.++.++.|.-.|.. +.+.+..... ... .. ..+.-.+..++.++.|+.+...|..+|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~--TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAK--TGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECC--CCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4455566667777777755 2333332221 100 00 012234567888889999999999999998876
Q ss_pred ecCCC----cEEEEEEeCCCEEEEEEc------CCeEEEEeCCCCeEEEEeccCCC------------------------
Q 001039 920 KGHDA----QVSCVRMLSGERVLTASH------DGTVKMWDVRTDTCVATVGRCSS------------------------ 965 (1179)
Q Consensus 920 ~~h~~----~V~~l~~s~~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~~~------------------------ 965 (1179)
..... .+.+.-...++.++++.. +|.|..+|.++|+.+..+.....
T Consensus 147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence 53211 121111112445666543 68999999999998876532111
Q ss_pred -------cE-EEEEEcCCCCEEEEEeCC-----C-----------eEEEEeCCCCceeEEeecCCCCeE-----------
Q 001039 966 -------AV-LCMEYDDSTGILAAGGRD-----A-----------VANIWDIRAGRQMHKFLGHTKWIR----------- 1010 (1179)
Q Consensus 966 -------~v-~~l~~sp~~~~l~sgs~d-----g-----------~I~iwD~~~~~~~~~~~~~~~~I~----------- 1010 (1179)
.+ ..+++++...++..+..+ + .|.-.|+++|+..-.++.....++
T Consensus 227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~ 306 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF 306 (527)
T ss_pred ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence 11 134777777777766522 2 677889999998877764322221
Q ss_pred EEEEcCC---EEEEEeCCCcEEEEEccCCeee
Q 001039 1011 SIRMDRD---TVITGSDDWTARMWSISRGTCD 1039 (1179)
Q Consensus 1011 sl~~~~~---~l~sgs~dg~I~iwd~~~~~~~ 1039 (1179)
.+..++. .++.+..+|.+++.|-++|+.+
T Consensus 307 d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 307 DLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 2223454 7889999999999999999875
No 345
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.82 E-value=0.012 Score=69.79 Aligned_cols=166 Identities=13% Similarity=0.151 Sum_probs=94.0
Q ss_pred cEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEe-------ccCCCcEEEEEEcCCC
Q 001039 904 SVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATV-------GRCSSAVLCMEYDDST 976 (1179)
Q Consensus 904 ~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~-------~~~~~~v~~l~~sp~~ 976 (1179)
.|.||+.. |+.+.++.-..+.+.++.|+++..|++...||.++++|+.... ...+ .-....+....+..+|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC
Confidence 48888854 6677766555589999999988889999999999999986333 1111 1111222222333345
Q ss_pred CEEEEEeCCCeEEEEeCCCCc-eeEEee---cC-------CC--CeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEee
Q 001039 977 GILAAGGRDAVANIWDIRAGR-QMHKFL---GH-------TK--WIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLA 1043 (1179)
Q Consensus 977 ~~l~sgs~dg~I~iwD~~~~~-~~~~~~---~~-------~~--~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 1043 (1179)
++.-..++.+.+.+--... ..+.+. +. .. .+..+..+....+....++.+.+.+-...+. +.
T Consensus 140 --ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~ 214 (410)
T PF04841_consen 140 --IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID 214 (410)
T ss_pred --EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc
Confidence 3333445555544322211 111111 10 00 0111111223334444445555444222111 11
Q ss_pred cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1044 CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1044 ~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
..+++..++.||+|+++|.-..+|.+.+.+.+-
T Consensus 215 -~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 215 -SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred -CCCCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence 346899999999999999999999999987655
No 346
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.79 E-value=0.00083 Score=79.84 Aligned_cols=300 Identities=12% Similarity=0.110 Sum_probs=159.8
Q ss_pred ccCCCCEEEEEe----CCCcEEEEcCCCCCceeEE--EeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEee
Q 001039 847 DREDAGFFISGS----TDCLVKIWDPSLRGSELRA--TLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELK 920 (1179)
Q Consensus 847 ~s~d~~~Lasgs----~Dg~I~lWd~~~~~~~~~~--~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~ 920 (1179)
|.|...++|.++ ..|+|.||-- ++++.. +..-|... .||+|..-.|+.|-.-|.+.+|...+.+.-....
T Consensus 23 WHPsePlfAVA~fS~er~GSVtIfad---tGEPqr~Vt~P~hatS-LCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~ 98 (1416)
T KOG3617|consen 23 WHPSEPLFAVASFSPERGGSVTIFAD---TGEPQRDVTYPVHATS-LCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE 98 (1416)
T ss_pred cCCCCceeEEEEecCCCCceEEEEec---CCCCCcccccceehhh-hccChHHHHHhhccccceeEEEecCCceeeeecc
Confidence 346666666654 3578888852 222221 12222222 4788888889999999999999999888777778
Q ss_pred cCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEe--ccC--CCc--EEEEEEcCCCC------EEEEEeCCCe
Q 001039 921 GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATV--GRC--SSA--VLCMEYDDSTG------ILAAGGRDAV 987 (1179)
Q Consensus 921 ~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~--~~~--~~~--v~~l~~sp~~~------~l~sgs~dg~ 987 (1179)
.|..+|..+.|+ +|+.++++..-|.|.+|.......++.. -.| ... ..|...++++. ..++.+.+..
T Consensus 99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~a 178 (1416)
T KOG3617|consen 99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESA 178 (1416)
T ss_pred CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhh
Confidence 899999999999 7999999999999999987643222221 111 122 33444455532 1233333333
Q ss_pred EE-EEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEE---
Q 001039 988 AN-IWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIIT--- 1063 (1179)
Q Consensus 988 I~-iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~s--- 1063 (1179)
+- .++.+....-... -.+-...+..+..++.+|+|+-.|- +|.+....+.... ..+-|.+...-+++
T Consensus 179 lD~~fnwk~~~a~rs~------~ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~--vQmLf~~~~eai~~i~e 249 (1416)
T KOG3617|consen 179 LDEPFNWKESLAERSD------EKSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE--VQMLFMGYCEAISIIIE 249 (1416)
T ss_pred hcccccCccchhhccc------cccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch--HHHHHhcccceEEEEee
Confidence 32 3322211000000 0111123457777888888888873 4444443332111 01111111111111
Q ss_pred ---------------------------EeCCCcEEEEEcCCC-CcceEEEeecccCceEEEEecCCCEEEEEECCCcEEE
Q 001039 1064 ---------------------------GSSDGLLRFWENDDA-GGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSL 1115 (1179)
Q Consensus 1064 ---------------------------gs~Dg~I~iwd~~~~-~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~i 1115 (1179)
|+..|.|-+=....- ..........+..-.+.+....+..++.|...|.+.+
T Consensus 250 ~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~ 329 (1416)
T KOG3617|consen 250 FLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTI 329 (1416)
T ss_pred eceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEE
Confidence 111111111100000 0001111112333344555677888999999999999
Q ss_pred EeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEE
Q 001039 1116 FHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSG 1164 (1179)
Q Consensus 1116 wd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasg 1164 (1179)
|--.+..+ .++. ....|.+ .......+.|+.+.|.|-...++.-
T Consensus 330 w~~v~~~f---~g~p-~~d~w~l-~~~~e~~g~I~~i~Wg~~k~~~avn 373 (1416)
T KOG3617|consen 330 WLDVNKGF---QGDP-TIDVWTL-NGKRESLGKISLIRWGPIKSTAAVN 373 (1416)
T ss_pred eeecCccc---cCCC-CcceEEe-cCchhhccceEEEEeccccchhhhh
Confidence 96543322 1111 1334543 3344556789999999966555443
No 347
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00075 Score=74.46 Aligned_cols=239 Identities=18% Similarity=0.174 Sum_probs=138.0
Q ss_pred eEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEE--Eec-CCCEE
Q 001039 820 IRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRA--INS-DRGKV 896 (1179)
Q Consensus 820 ~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~-d~~~l 896 (1179)
.+.+.+|...|.+++||| .+..++..++.+.+|+|.|+. +...+..+..| ..+++ |.- +.+++
T Consensus 186 sq~lp~~g~~IrdlafSp-----------~~~GLl~~asl~nkiki~dle--t~~~vssy~a~-~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSP-----------FNEGLLGLASLGNKIKIMDLE--TSCVVSSYIAY-NQIWSCCWDLDERHVI 251 (463)
T ss_pred hhcccccchhhhhhccCc-----------cccceeeeeccCceEEEEecc--cceeeeheecc-CCceeeeeccCCccee
Confidence 447888999999999984 334488999999999999987 45555666666 55554 433 35678
Q ss_pred EEEeCCCcEEEEECCCCeE-EEEee--cCCCcEEEEEEe-------CCCEEEEEEcCCeEEEEeCCCC--eEEEEec-cC
Q 001039 897 VSGSDDQSVLVWDKQTSQL-LEELK--GHDAQVSCVRML-------SGERVLTASHDGTVKMWDVRTD--TCVATVG-RC 963 (1179)
Q Consensus 897 ~sgs~dg~I~iwd~~t~~~-~~~~~--~h~~~V~~l~~s-------~~~~l~sgs~dg~I~iwd~~~~--~~~~~~~-~~ 963 (1179)
++|..+|.|.+||++..+- +..+. ....+|..++.. .+..++..+.+ ...|++.-. ....... +.
T Consensus 252 YaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~ 329 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEP 329 (463)
T ss_pred EEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCC
Confidence 8999999999999976432 12221 123345544443 23334333332 455655322 1112111 33
Q ss_pred CCcEEEEEEcCCCCEEEEEeCC-C-------eEEEEeCCCCceeEEe-ecC---------CC-CeEEEEEcCC-EEEEEe
Q 001039 964 SSAVLCMEYDDSTGILAAGGRD-A-------VANIWDIRAGRQMHKF-LGH---------TK-WIRSIRMDRD-TVITGS 1023 (1179)
Q Consensus 964 ~~~v~~l~~sp~~~~l~sgs~d-g-------~I~iwD~~~~~~~~~~-~~~---------~~-~I~sl~~~~~-~l~sgs 1023 (1179)
.+...++++++..+.++..... . .+.--|-++|..+..- .++ .. .+.+. .+.+ .+.+|+
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~-~~nn~iv~~gd 408 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAV-EDNNYIVVVGD 408 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceecc-ccccEEEEecC
Confidence 5566777777755555444322 0 0111122333333221 111 11 11111 1223 455566
Q ss_pred CCCcEEEEEccCCeeeEEeecCCcCEEEEEEec-CC-CEEEEEeCCCcEEEEEcCC
Q 001039 1024 DDWTARMWSISRGTCDAVLACHAGPVQCVEYSS-SD-RGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1024 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp-dg-~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
..+.+.+||..+.+.+.++.. +.+|..++... +| .+|++- .|..++|+..+.
T Consensus 409 ~tn~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~es 462 (463)
T KOG1645|consen 409 STNELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYLALL-TDDRVHIYKNES 462 (463)
T ss_pred CcceeEEeccchhheeeeccc-CcceeecceeecCCcchhhhe-ecceEEEEecCC
Confidence 778899999999999998874 47888887654 33 345444 566788886543
No 348
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.63 E-value=0.043 Score=67.17 Aligned_cols=186 Identities=10% Similarity=0.076 Sum_probs=117.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeecCC-CcEE----------EEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEec
Q 001039 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHD-AQVS----------CVRMLSGERVLTASHDGTVKMWDVRTDTCVATVG 961 (1179)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~-~~V~----------~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 961 (1179)
+..++.++.++.|.-.|..+|+.+..+.... ..+. .+++ .++.++.++.|+.+...|.++|+.+....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av-~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL-YDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE-ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 5677778888899999999999988775321 1111 1222 24577888899999999999999987764
Q ss_pred cCCCc-EEEEEEcC---CCCEEEEEeC------CCeEEEEeCCCCceeEEeecCC-------------------------
Q 001039 962 RCSSA-VLCMEYDD---STGILAAGGR------DAVANIWDIRAGRQMHKFLGHT------------------------- 1006 (1179)
Q Consensus 962 ~~~~~-v~~l~~sp---~~~~l~sgs~------dg~I~iwD~~~~~~~~~~~~~~------------------------- 1006 (1179)
..... -..+.-+| ++ .++++.. +|.|.-+|.++|+.+-++..-.
T Consensus 148 ~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred cccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence 32110 01111122 34 4555432 6899999999998876643211
Q ss_pred ------CCeE-EEEEcCC--EEEEEeCC-----C-----------cEEEEEccCCeeeEEeecCCcCEE---------EE
Q 001039 1007 ------KWIR-SIRMDRD--TVITGSDD-----W-----------TARMWSISRGTCDAVLACHAGPVQ---------CV 1052 (1179)
Q Consensus 1007 ------~~I~-sl~~~~~--~l~sgs~d-----g-----------~I~iwd~~~~~~~~~~~~h~~~V~---------~l 1052 (1179)
..++ .+++|++ ++..+..+ + .|.-.|+++|+....++.....++ -+
T Consensus 227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~ 306 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF 306 (527)
T ss_pred ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence 0111 2344543 45544421 2 677789999998887764222211 12
Q ss_pred EEecCCC---EEEEEeCCCcEEEEEcCCCCc
Q 001039 1053 EYSSSDR---GIITGSSDGLLRFWENDDAGG 1080 (1179)
Q Consensus 1053 ~~spdg~---~l~sgs~Dg~I~iwd~~~~~~ 1080 (1179)
....+|+ .++.++.+|.+.+.|..+++.
T Consensus 307 d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 307 DLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 2234666 678999999999999988653
No 349
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=97.61 E-value=5.9e-05 Score=88.91 Aligned_cols=133 Identities=24% Similarity=0.307 Sum_probs=118.5
Q ss_pred ceeEEeCCCCCCCCCCCcchHHHhccCChhhHHHHHHHHhccccEEEEeCCcchHHHHHHHHHHcccccCCCceeecccc
Q 001039 188 CLLSVEAPPKEGLPHADISFQPLVQLLDVDNLITLFTAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLLF 267 (1179)
Q Consensus 188 ~~~~~~~p~~~~lp~~~~~~~~l~~~l~~~~~~~l~~~~L~E~~il~~s~~~~~ls~~~~al~~ll~P~~w~~~~IP~lP 267 (1179)
.....++|....+|..+-+....|..+..+..+.++.+.++|++.+.+|..++++.-.++.+..|=+||.|+-.++|..|
T Consensus 35 ~~~~vq~P~~~~~~f~~~s~~s~~~~~pde~f~r~~~~f~~~~~dl~~~~~~sr~~g~n~~~~pL~kpla~ypenvpwnP 114 (1295)
T KOG2080|consen 35 TTLVVQRPGPKELPFFDDSIGSIFDYLPDEKFIRLFSCFLLEHQDLLCSKDLSRLMGVNESLLPLSKPLAWYPENVPWNP 114 (1295)
T ss_pred ccceeeCCCCccccceeccccchhccCccHHHHHHHHHHHHhhhhccccccchhhhccCcccccccchhhcCccCCCCCc
Confidence 34466789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCCcceEEeccCCCCccccCCCcEEEEEcCCCeeeCCCCCCCCCchh
Q 001039 268 FSGVDYIDAPTPYMMGLHSGVDTSNLAMDGVVVVDLEYNRICTTEEIPPIPEPE 321 (1179)
Q Consensus 268 ~~l~~~l~aP~P~iiGi~~~~~~~~~~~~~~~~vdlD~~~i~~~~~~~~lP~~~ 321 (1179)
.+-.++..+|+|+-+|..+..+..+... .-.+++.|+|+=+.+.+++-.|+-.
T Consensus 115 fd~~~~~ml~mP~gl~frtq~~~~Ep~F-hSfiitredG~r~ygf~l~fyeevr 167 (1295)
T KOG2080|consen 115 FDKLDFFMLCMPKGLGFRTQDDVPEPQF-HSFIITREDGSRTYGFDLTFYEEVR 167 (1295)
T ss_pred ccccceeeeccccccceeccCCCCchhh-heeeEEcccCccccCcceeechhhc
Confidence 9999999999999999877544333322 2489999999999999988887643
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.59 E-value=0.016 Score=68.58 Aligned_cols=229 Identities=14% Similarity=0.134 Sum_probs=123.0
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEE
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVS 898 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~s 898 (1179)
..+.+....-....+.++ |+|++++.++ ||.-.|+... .... ...|. +.-.+|.. .+.+|+
T Consensus 24 ~~k~lg~~~~~p~~ls~n------------pngr~v~V~g-~geY~iyt~~--~~r~--k~~G~-g~~~vw~~-~n~yAv 84 (443)
T PF04053_consen 24 SVKELGSCEIYPQSLSHN------------PNGRFVLVCG-DGEYEIYTAL--AWRN--KAFGS-GLSFVWSS-RNRYAV 84 (443)
T ss_dssp --EEEEE-SS--SEEEE-------------TTSSEEEEEE-TTEEEEEETT--TTEE--EEEEE--SEEEE-T-SSEEEE
T ss_pred EeccCCCCCcCCeeEEEC------------CCCCEEEEEc-CCEEEEEEcc--CCcc--cccCc-eeEEEEec-CccEEE
Confidence 445555556667788887 8999999855 7788888732 2222 11222 12224555 556777
Q ss_pred EeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCE
Q 001039 899 GSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGI 978 (1179)
Q Consensus 899 gs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 978 (1179)
-..+++|.|+.--+.+....++.. ..+..+.. |..+...+. +.|.+||+.+++.+..+... .|..+.|+++|.+
T Consensus 85 ~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~--G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~ 158 (443)
T PF04053_consen 85 LESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG--GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGEL 158 (443)
T ss_dssp E-TTS-EEEEETTEE-TT-----S-S-EEEEE---SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSE
T ss_pred EECCCeEEEEEcCccccceEEcCC-cccceEEc--CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCE
Confidence 777889999632222222233321 12333332 666666554 48999999999999998643 3899999999999
Q ss_pred EEEEeCCCeEEEEeCCCC-----------ceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCc
Q 001039 979 LAAGGRDAVANIWDIRAG-----------RQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAG 1047 (1179)
Q Consensus 979 l~sgs~dg~I~iwD~~~~-----------~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~ 1047 (1179)
++..+.+ .+.+++.... .....+..-...|.+..|.++.++-.+.. .++. +-.|+. ..+..-+.
T Consensus 159 val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkY--l~~Ge~-~~i~~ld~ 233 (443)
T PF04053_consen 159 VALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKY--LVNGET-GIIAHLDK 233 (443)
T ss_dssp EEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEE--EETTEE-EEEEE-SS
T ss_pred EEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEE--EEcCCc-ceEEEcCC
Confidence 9998755 6777765432 02333333367888999988866655555 6666 344433 33333356
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1048 PVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1048 ~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
++.=+.+.++.+.+.....|+.+..+.++.
T Consensus 234 ~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 234 PLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp --EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred ceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 777788888778888888898888887654
No 351
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.58 E-value=0.028 Score=66.08 Aligned_cols=112 Identities=18% Similarity=0.192 Sum_probs=71.7
Q ss_pred CEEEEEEecC-CCEEEEE----eCCCcE----EEEEcCCCCcceEEE--eeccc-CceEEEEecCCCEEEEEECCCcEEE
Q 001039 1048 PVQCVEYSSS-DRGIITG----SSDGLL----RFWENDDAGGIKCVK--NVTIH-SSAILSINAGDHWLGIGAADNSMSL 1115 (1179)
Q Consensus 1048 ~V~~l~~spd-g~~l~sg----s~Dg~I----~iwd~~~~~~~~~~~--~~~~h-~~~i~sis~dg~~lasgs~Dg~I~i 1115 (1179)
...++.||-. ...+.+. +.+|.+ .+|+...++ .+++. ++.-. ...+.+.+|+...++.|+.||+|.+
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k-lqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNK-LQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCc-eeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 3456667653 3334332 234432 356665432 33332 22212 2233455899999999999999999
Q ss_pred EeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001039 1116 FHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1116 wd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
||...+. .....+.-..+.++|+|+|..+++|+..|.+.+||+.-
T Consensus 286 yD~~~~~-----------------t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 286 YDTTRGV-----------------TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEcCCCe-----------------eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 9986321 11112334578999999999999999999999999864
No 352
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.56 E-value=0.059 Score=61.40 Aligned_cols=278 Identities=12% Similarity=0.130 Sum_probs=125.4
Q ss_pred EEecCCCEEEEEeC---CCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccC
Q 001039 888 AINSDRGKVVSGSD---DQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRC 963 (1179)
Q Consensus 888 ~~s~d~~~l~sgs~---dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 963 (1179)
|+..||+.|+.++. ...+.+.|+.+++..+--.+.........++ +++.++-...+..+.-.|+++.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 56788987776655 4567778999988776555432222233344 4566655556678999999998876666555
Q ss_pred CCcEEEEEEc--CCCCEEEEEe----------------------CCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC--
Q 001039 964 SSAVLCMEYD--DSTGILAAGG----------------------RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD-- 1017 (1179)
Q Consensus 964 ~~~v~~l~~s--p~~~~l~sgs----------------------~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~-- 1017 (1179)
...+-...|. .++..++..- -...|.-.|+.+|+....+ ....++.-+.++|.
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~-~~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF-EDTDWLGHVQFSPTDP 200 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE-EESS-EEEEEEETTEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE-ecCccccCcccCCCCC
Confidence 5555545553 3555443221 0234666677777654333 34556666666543
Q ss_pred -EEEEEeC---CC-cEEEEEccC-CeeeEEeecCC--cCEEEEEEecCCCEEEEEe-----CCCcEEEEEcCCCCcceEE
Q 001039 1018 -TVITGSD---DW-TARMWSISR-GTCDAVLACHA--GPVQCVEYSSSDRGIITGS-----SDGLLRFWENDDAGGIKCV 1084 (1179)
Q Consensus 1018 -~l~sgs~---dg-~I~iwd~~~-~~~~~~~~~h~--~~V~~l~~spdg~~l~sgs-----~Dg~I~iwd~~~~~~~~~~ 1084 (1179)
.++-|-+ +. .-|||-+++ |...+.+..+. ..+..=-|.|||..+.--+ .+..|.-+|..+++. +.+
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~~~ 279 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-RRL 279 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-EEE
T ss_pred CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-eEE
Confidence 5555543 22 136676543 33333333332 2344446899998876432 233566677777432 222
Q ss_pred EeecccCceEEEEecCCCEEEEEECCC----------------cEEEEeCCCCCcCcccCCCCccccceeeeecCCCcc-
Q 001039 1085 KNVTIHSSAILSINAGDHWLGIGAADN----------------SMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVA- 1147 (1179)
Q Consensus 1085 ~~~~~h~~~i~sis~dg~~lasgs~Dg----------------~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~- 1147 (1179)
.... ...-.-.++||++++--+.|. .|+++++..+....+...+ ..|... .++..
T Consensus 280 ~~~p--~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~---~sw~v~---~~~~q~ 351 (386)
T PF14583_consen 280 MEMP--WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHD---TSWKVL---DGDRQV 351 (386)
T ss_dssp EEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE----------B---TTBSST
T ss_pred EeCC--ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeecc---Ccceee---cCCCcc
Confidence 2221 222233368999887644442 4556666543221111111 112211 11111
Q ss_pred cEEEEEEcCCCCEEEE-EeCCCcEEEEEC
Q 001039 1148 VVRCIASDLERKRICS-GGRNGLLRLWEA 1175 (1179)
Q Consensus 1148 ~V~~v~fspdg~~Las-gs~Dg~I~vWdv 1175 (1179)
.=....|||||++++- ++..|...|+-+
T Consensus 352 ~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 352 THPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp T----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred CCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 1246789999998654 556777776644
No 353
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.53 E-value=0.21 Score=55.93 Aligned_cols=234 Identities=12% Similarity=0.103 Sum_probs=140.2
Q ss_pred CCCCEEEEEe----------CCCcEEEEcCCCCCceeEEEecc-cc------ccEEEEecCCCEEEEEe--CCCcEEEEE
Q 001039 849 EDAGFFISGS----------TDCLVKIWDPSLRGSELRATLKG-HT------RTVRAINSDRGKVVSGS--DDQSVLVWD 909 (1179)
Q Consensus 849 ~d~~~Lasgs----------~Dg~I~lWd~~~~~~~~~~~l~~-h~------~~v~~~s~d~~~l~sgs--~dg~I~iwd 909 (1179)
||++.+++++ ..-.|.+||..+-.......+.. |. ....+++.|+++++... -...|.|.|
T Consensus 45 pdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVD 124 (342)
T PF06433_consen 45 PDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVD 124 (342)
T ss_dssp TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEE
T ss_pred CCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEE
Confidence 8999888754 34469999976322222122322 12 22346789999988764 456799999
Q ss_pred CCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCC-CCeEEEEe----ccCCCcE-EEEEEcCCCCEEEEEe
Q 001039 910 KQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVR-TDTCVATV----GRCSSAV-LCMEYDDSTGILAAGG 983 (1179)
Q Consensus 910 ~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~-~~~~~~~~----~~~~~~v-~~l~~sp~~~~l~sgs 983 (1179)
+..++.+.++.... +..+--..+..+.+-|.||.+.-..+. .|+...+. .....++ ..-+++..+..++-.+
T Consensus 125 l~~~kvv~ei~~PG--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~S 202 (342)
T PF06433_consen 125 LAAKKVVGEIDTPG--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVS 202 (342)
T ss_dssp TTTTEEEEEEEGTS--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEB
T ss_pred CCCCceeeeecCCC--EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEe
Confidence 99999998887432 333333345678899999999988887 45544322 1122222 2344555555566677
Q ss_pred CCCeEEEEeCCCCcee--EEeecC------C----CCeEEEEEc--CCEEEEE---eCCC-------cEEEEEccCCeee
Q 001039 984 RDAVANIWDIRAGRQM--HKFLGH------T----KWIRSIRMD--RDTVITG---SDDW-------TARMWSISRGTCD 1039 (1179)
Q Consensus 984 ~dg~I~iwD~~~~~~~--~~~~~~------~----~~I~sl~~~--~~~l~sg---s~dg-------~I~iwd~~~~~~~ 1039 (1179)
.+|.|+-.|+...... ..+..- . +.-.-++++ .+.|.+. +.+| .|-++|+.+++.+
T Consensus 203 y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv 282 (342)
T PF06433_consen 203 YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRV 282 (342)
T ss_dssp TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEE
T ss_pred cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEE
Confidence 8899999888765422 222111 0 111223443 2333322 1122 4778899999999
Q ss_pred EEeecCCcCEEEEEEecCCC-EEEEEe-CCCcEEEEEcCCCCcceEEE
Q 001039 1040 AVLACHAGPVQCVEYSSSDR-GIITGS-SDGLLRFWENDDAGGIKCVK 1085 (1179)
Q Consensus 1040 ~~~~~h~~~V~~l~~spdg~-~l~sgs-~Dg~I~iwd~~~~~~~~~~~ 1085 (1179)
..+.. ..++.++..+.+.+ +|++.+ .++.+.+||..+++....+.
T Consensus 283 ~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 283 ARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 88873 34678999999876 554444 57899999999955444443
No 354
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.52 E-value=0.0067 Score=72.76 Aligned_cols=224 Identities=7% Similarity=-0.077 Sum_probs=130.3
Q ss_pred cCCCEEEEEeC-CCcEEEEECCCCeEEEEeec-CCCcEEEEEE-------------------e-CCCEEE-EEEcCCeEE
Q 001039 891 SDRGKVVSGSD-DQSVLVWDKQTSQLLEELKG-HDAQVSCVRM-------------------L-SGERVL-TASHDGTVK 947 (1179)
Q Consensus 891 ~d~~~l~sgs~-dg~I~iwd~~t~~~~~~~~~-h~~~V~~l~~-------------------s-~~~~l~-sgs~dg~I~ 947 (1179)
.||++++.-.. +..|-..+++..++-+.+.. ....+..+.+ + +|..+. +.-..+.+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 57777777664 55666666665554433321 1111111111 1 233332 223346678
Q ss_pred EEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEe
Q 001039 948 MWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD----AVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGS 1023 (1179)
Q Consensus 948 iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~d----g~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs 1023 (1179)
+.|..+.+...++.-. +....++++++|+++++.+.+ +++...+..+...+..+. ...+..+.-++++...
T Consensus 219 vID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn--i~~iea~vkdGK~~~V-- 293 (635)
T PRK02888 219 AVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN--IARIEEAVKAGKFKTI-- 293 (635)
T ss_pred EEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc--hHHHHHhhhCCCEEEE--
Confidence 8888888777766433 245678899999999887632 223333322221111111 0011111124554444
Q ss_pred CCCcEEEEEccC----C-eeeEEeecCCcCEEEEEEecCCCEEEEEe-CCCcEEEEEcCCCCc---------ceEEEeec
Q 001039 1024 DDWTARMWSISR----G-TCDAVLACHAGPVQCVEYSSSDRGIITGS-SDGLLRFWENDDAGG---------IKCVKNVT 1088 (1179)
Q Consensus 1024 ~dg~I~iwd~~~----~-~~~~~~~~h~~~V~~l~~spdg~~l~sgs-~Dg~I~iwd~~~~~~---------~~~~~~~~ 1088 (1179)
.++.|.+.|..+ + +....+. -......+.++|||+++++++ .+++|.|.|+.+... ........
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 367899999988 3 3444443 456678999999999987766 589999999987331 01122222
Q ss_pred ccCc-eEEEEecCCCEEEEEECCCcEEEEeCCC
Q 001039 1089 IHSS-AILSINAGDHWLGIGAADNSMSLFHRPQ 1120 (1179)
Q Consensus 1089 ~h~~-~i~sis~dg~~lasgs~Dg~I~iwd~~~ 1120 (1179)
.... .-+++..+|....+-.-|..|..|++..
T Consensus 373 vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 2222 2467788888888888999999999874
No 355
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.50 E-value=0.029 Score=64.50 Aligned_cols=219 Identities=9% Similarity=0.087 Sum_probs=124.9
Q ss_pred CeEEEEeCCCCeEEEEecc-CCCcEEEEE---EcCC----CCEEEEEeC----------CCeEEEEeCCCC----ceeEE
Q 001039 944 GTVKMWDVRTDTCVATVGR-CSSAVLCME---YDDS----TGILAAGGR----------DAVANIWDIRAG----RQMHK 1001 (1179)
Q Consensus 944 g~I~iwd~~~~~~~~~~~~-~~~~v~~l~---~sp~----~~~l~sgs~----------dg~I~iwD~~~~----~~~~~ 1001 (1179)
+.|++.|..+.+.+.++.- ....+.+++ +..+ ..++++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4678888888877766542 233444444 3332 467777753 289999999884 22222
Q ss_pred e--ecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCe-eeEEee-cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1002 F--LGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGT-CDAVLA-CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1002 ~--~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~-~~~~~~-~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
+ ....++|++++.-++.++++. ++.|.+|++...+ ....-. .....++++... +++++.|+....+.++..+.
T Consensus 82 i~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEET
T ss_pred EEEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEc
Confidence 1 244678999988666655554 5889999998887 433322 123355666554 67999999888888886554
Q ss_pred CC-cceEEEeecccCceEEEEe--cCCCEEEEEECCCcEEEEeCCCCCcCcccCCCC-ccccceeeeecCCCcccEEEE-
Q 001039 1078 AG-GIKCVKNVTIHSSAILSIN--AGDHWLGIGAADNSMSLFHRPQERLGGFSGTGS-KMSGWQLYRTPQKTVAVVRCI- 1152 (1179)
Q Consensus 1078 ~~-~~~~~~~~~~h~~~i~sis--~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~-~~~~~~~~~~~~~h~~~V~~v- 1152 (1179)
.. ....+.. ......++++. .+++.+++++.+|.+.++........ ...+. .+ ...... .....|+++
T Consensus 159 ~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~--~~~~~~~L---~~~~~f-~lg~~v~~~~ 231 (321)
T PF03178_consen 159 ENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPN--SRDGDPKL---ERISSF-HLGDIVNSFR 231 (321)
T ss_dssp TTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SS--TTTTTTBE---EEEEEE-E-SS-EEEEE
T ss_pred cCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcc--cccccccc---eeEEEE-ECCCccceEE
Confidence 22 1333322 22344555553 36679999999999999998632111 01111 11 111211 223457777
Q ss_pred --EEcCC--CC------EEEEEeCCCcEEE
Q 001039 1153 --ASDLE--RK------RICSGGRNGLLRL 1172 (1179)
Q Consensus 1153 --~fspd--g~------~Lasgs~Dg~I~v 1172 (1179)
++.|. +. .++.++.+|.|.+
T Consensus 232 ~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 232 RGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp E--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 44552 22 4888889998873
No 356
>PHA02713 hypothetical protein; Provisional
Probab=97.42 E-value=0.0076 Score=74.36 Aligned_cols=217 Identities=9% Similarity=0.092 Sum_probs=117.3
Q ss_pred eEEEEeCCCCeEEEEeccCCCcE-EEEEEcCCCCEEEEEeCC------CeEEEEeCCCCceeE--EeecCCCCeEEEEEc
Q 001039 945 TVKMWDVRTDTCVATVGRCSSAV-LCMEYDDSTGILAAGGRD------AVANIWDIRAGRQMH--KFLGHTKWIRSIRMD 1015 (1179)
Q Consensus 945 ~I~iwd~~~~~~~~~~~~~~~~v-~~l~~sp~~~~l~sgs~d------g~I~iwD~~~~~~~~--~~~~~~~~I~sl~~~ 1015 (1179)
.+..||..+++....-.-..... .+++. -++...++||.+ ..+..||.++..... .+............+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 46678877765432211111111 12222 356677777753 347788987764321 122222233445567
Q ss_pred CCEEEEEeCCC-----cEEEEEccCCeeeEE--eecCCcCEEEEEEecCCCEEEEEeCCC--------------------
Q 001039 1016 RDTVITGSDDW-----TARMWSISRGTCDAV--LACHAGPVQCVEYSSSDRGIITGSSDG-------------------- 1068 (1179)
Q Consensus 1016 ~~~l~sgs~dg-----~I~iwd~~~~~~~~~--~~~h~~~V~~l~~spdg~~l~sgs~Dg-------------------- 1068 (1179)
+...+.||.++ ++..||..+.+-... +.........+ .-+|+..+.||.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCccccccccccccccccccccc
Confidence 77778888764 478899877643321 11111111112 23677777787653
Q ss_pred ---cEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCC------cEEEEeCCCCCcCcccCCCCccccceee
Q 001039 1069 ---LLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADN------SMSLFHRPQERLGGFSGTGSKMSGWQLY 1139 (1179)
Q Consensus 1069 ---~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg------~I~iwd~~~~~~~~~~~~g~~~~~~~~~ 1139 (1179)
.+..||..+. .+..+..+...........-+|+..+.|+.++ .+..||..+. ..|...
T Consensus 430 ~~~~ve~YDP~td-~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~------------~~W~~~ 496 (557)
T PHA02713 430 SSNKVIRYDTVNN-IWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTY------------NGWELI 496 (557)
T ss_pred ccceEEEECCCCC-eEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCC------------CCeeEc
Confidence 4667877763 23333333222222223345777777777542 3567777630 135555
Q ss_pred eecCCCcccEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCC
Q 001039 1140 RTPQKTVAVVRCIASDLERKRICSGGRNG--LLRLWEATINI 1179 (1179)
Q Consensus 1140 ~~~~~h~~~V~~v~fspdg~~Lasgs~Dg--~I~vWdv~tg~ 1179 (1179)
............+++ +|++.++||.|| ++..+|+.|++
T Consensus 497 ~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 497 TTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred cccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 544443333434443 788999999998 88888888763
No 357
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.39 E-value=0.077 Score=62.11 Aligned_cols=265 Identities=13% Similarity=0.083 Sum_probs=138.3
Q ss_pred ceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEecccccc-EEEEecCCCEEEEEeCCCcEEE
Q 001039 829 AITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRT-VRAINSDRGKVVSGSDDQSVLV 907 (1179)
Q Consensus 829 ~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~-v~~~s~d~~~l~sgs~dg~I~i 907 (1179)
.|+++.|+ ++..-|+.|...|.|.||.+..+...-......+... -..+.. .++.-.+
T Consensus 3 ~v~~vs~a------------~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l 61 (395)
T PF08596_consen 3 SVTHVSFA------------PETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSL---------NNSPGKL 61 (395)
T ss_dssp -EEEEEEE------------TTTTEEEEEETTS-EEEEEEEE------------------S--G---------GGSS-SE
T ss_pred eEEEEEec------------CCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccc---------cCCCcce
Confidence 47777777 7888899999999999998652111100000000000 000100 0111122
Q ss_pred EECCC---------CeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEe--cc------CCCcEEEE
Q 001039 908 WDKQT---------SQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATV--GR------CSSAVLCM 970 (1179)
Q Consensus 908 wd~~t---------~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~--~~------~~~~v~~l 970 (1179)
-|+.. -.+...++...++|++++.++=..++.|..+|.+.|.|++....+..- .. ....++++
T Consensus 62 ~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~i 141 (395)
T PF08596_consen 62 TDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSI 141 (395)
T ss_dssp EE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEE
T ss_pred EEehhhCCcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEE
Confidence 23221 133444556688999999999889999999999999999888777652 12 23467788
Q ss_pred EEcC-----CC---CEEEEEeCCCeEEEEeCCC---Cce----eEEeecCCCCeEEEEE-cC------------------
Q 001039 971 EYDD-----ST---GILAAGGRDAVANIWDIRA---GRQ----MHKFLGHTKWIRSIRM-DR------------------ 1016 (1179)
Q Consensus 971 ~~sp-----~~---~~l~sgs~dg~I~iwD~~~---~~~----~~~~~~~~~~I~sl~~-~~------------------ 1016 (1179)
.|+- |+ -.+++|+..|.+.+|.+-- +.- ......+.+.|..+.. +.
T Consensus 142 eF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~ 221 (395)
T PF08596_consen 142 EFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSK 221 (395)
T ss_dssp EEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGG
T ss_pred EEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhcccc
Confidence 8763 33 4688999999999998751 111 1112245556555543 10
Q ss_pred ----CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEE-----ecCCCEEEEEeCCCcEEEEEcCCCCcceEEEee
Q 001039 1017 ----DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEY-----SSSDRGIITGSSDGLLRFWENDDAGGIKCVKNV 1087 (1179)
Q Consensus 1017 ----~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~-----spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~ 1087 (1179)
..++....+..++++...+.+.........-....+++ ...+..|++-..+|.++++.+.. ++.+...
T Consensus 222 g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~---Lkei~~~ 298 (395)
T PF08596_consen 222 GISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS---LKEIKSV 298 (395)
T ss_dssp T----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-----EEEEE
T ss_pred CCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC---chHhhcc
Confidence 12444555778999998887765554422223334445 23567788889999999999988 5555554
Q ss_pred cccC------ceEEEEecCCCEEEEEECCCcEEEEeC
Q 001039 1088 TIHS------SAILSINAGDHWLGIGAADNSMSLFHR 1118 (1179)
Q Consensus 1088 ~~h~------~~i~sis~dg~~lasgs~Dg~I~iwd~ 1118 (1179)
.-.. ..-.+++.+|..++-.+. ..+.++.+
T Consensus 299 ~l~~~~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 299 SLPPPLDSRRLSSSSISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp E-SS---HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred cCCCccccccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence 4321 122556788887665543 34444443
No 358
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.37 E-value=0.14 Score=59.76 Aligned_cols=287 Identities=13% Similarity=0.106 Sum_probs=149.5
Q ss_pred ccCCCceeeccC-----------ceEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccc
Q 001039 777 SREASSRSHSFS-----------RVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLV 845 (1179)
Q Consensus 777 Spdg~~las~~~-----------dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~ 845 (1179)
||||++++.... +..++|+.+++ +..+......+....||
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~--------------------~~~l~~~~~~~~~~~~s--------- 51 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE--------------------ITPLTPPPPKLQDAKWS--------- 51 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE--------------------EEESS-EETTBSEEEE----------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc--------------------eEECcCCccccccceee---------
Confidence 678877666332 27788888755 22232235667777777
Q ss_pred cccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEecc------------------ccccEEEEecCCCEEEEEeCC-CcEE
Q 001039 846 GDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKG------------------HTRTVRAINSDRGKVVSGSDD-QSVL 906 (1179)
Q Consensus 846 ~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~------------------h~~~v~~~s~d~~~l~sgs~d-g~I~ 906 (1179)
|||+.+|-.. ++.|.+++.... .....+..| .......+|||+++|+....| ..|.
T Consensus 52 ---P~g~~~~~v~-~~nly~~~~~~~-~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~ 126 (353)
T PF00930_consen 52 ---PDGKYIAFVR-DNNLYLRDLATG-QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVP 126 (353)
T ss_dssp ---SSSTEEEEEE-TTEEEEESSTTS-EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-
T ss_pred ---cCCCeeEEEe-cCceEEEECCCC-CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCc
Confidence 8999999887 678999986522 222222222 011223478999998877543 3333
Q ss_pred EEECCCCeEEEEeecCC---CcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEE--e---ccCCCcEEEEEEcCCCC
Q 001039 907 VWDKQTSQLLEELKGHD---AQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVAT--V---GRCSSAVLCMEYDDSTG 977 (1179)
Q Consensus 907 iwd~~t~~~~~~~~~h~---~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~--~---~~~~~~v~~l~~sp~~~ 977 (1179)
.+.+. ...... ..+..+.+. .|..-.. -.+.++|+.+++.... . .....-+..+.|.++++
T Consensus 127 ~~~~~------~~~~~~~~yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~ 196 (353)
T PF00930_consen 127 EYPLP------DYSPPDSQYPEVESIRYPKAGDPNPR----VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGK 196 (353)
T ss_dssp EEEEE------EESSSTESS-EEEEEE--BTTS---E----EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTE
T ss_pred eEEee------ccCCccccCCcccccccCCCCCcCCc----eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCc
Confidence 33221 111111 134445554 3433221 2467789988875322 1 23456788999999998
Q ss_pred EEEEEe--CC---CeEEEEeCCCCceeEEee-cCCCCe---EEEEE---cCC-EEEEEeCCCcE--EEEEccCCeeeEEe
Q 001039 978 ILAAGG--RD---AVANIWDIRAGRQMHKFL-GHTKWI---RSIRM---DRD-TVITGSDDWTA--RMWSISRGTCDAVL 1042 (1179)
Q Consensus 978 ~l~sgs--~d---g~I~iwD~~~~~~~~~~~-~~~~~I---~sl~~---~~~-~l~sgs~dg~I--~iwd~~~~~~~~~~ 1042 (1179)
.++..- .+ ..+.++|..++....... ....+| ....+ +++ ++.....||.- .+++...+. ...+
T Consensus 197 ~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~l 275 (353)
T PF00930_consen 197 RLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQL 275 (353)
T ss_dssp EEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEES
T ss_pred EEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eecc
Confidence 444432 22 257778887776543332 222332 13333 233 55556677764 445555554 3455
Q ss_pred ecCCcCEEE-EEEecCCCEEE-EEeCC--Cc--EEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEEC
Q 001039 1043 ACHAGPVQC-VEYSSSDRGII-TGSSD--GL--LRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAA 1109 (1179)
Q Consensus 1043 ~~h~~~V~~-l~~spdg~~l~-sgs~D--g~--I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~ 1109 (1179)
....-.|+. +.++++++.+. ++..+ +. +..-+++.++..+++....+.. .-.++||+|++++....
T Consensus 276 T~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~-~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 276 TSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH-YSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT-EEEEE-TTSSEEEEEEE
T ss_pred ccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc-eEEEECCCCCEEEEEEc
Confidence 555666755 67888877765 44432 23 4444455123333433222222 35677999998876543
No 359
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.37 E-value=0.072 Score=63.13 Aligned_cols=116 Identities=9% Similarity=0.060 Sum_probs=71.0
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC-CCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEe
Q 001039 964 SSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH-TKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVL 1042 (1179)
Q Consensus 964 ~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~-~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 1042 (1179)
.+++..++.||+|+++|.-..+|.+.+.+..-.+....+... ......+.|.|+-.++......+.++...
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~~~~l~lvg~~-------- 287 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSWEDELLLVGPD-------- 287 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEeCCEEEEECCC--------
Confidence 468999999999999999999999999987666666665444 34566777766522222223344444321
Q ss_pred ecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE
Q 001039 1043 ACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI 1097 (1179)
Q Consensus 1043 ~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si 1097 (1179)
... +.|.-++..++..-.|| +||..-.. ...+..+......|..+
T Consensus 288 ---~~~---~~~~~~~~~~l~~E~DG-~riit~~~---~~~l~~Vp~~~~~if~i 332 (410)
T PF04841_consen 288 ---GDS---ISFWYDGPVILVSEIDG-VRIITSTS---HEFLQRVPDSTENIFRI 332 (410)
T ss_pred ---CCc---eEEeccCceEEeccCCc-eEEEeCCc---eEEEEECCHHHHHHhcc
Confidence 111 23333444556666677 88886555 45555554444444333
No 360
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.37 E-value=0.036 Score=65.73 Aligned_cols=224 Identities=11% Similarity=0.036 Sum_probs=111.0
Q ss_pred CCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 001039 922 HDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHK 1001 (1179)
Q Consensus 922 h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~ 1001 (1179)
.......+.+++...+++.+.||...++.....+.... +.-...+|...++ +|+-..++.|.++.--+.+....
T Consensus 31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEcCccccceE
Confidence 44456788888666666668889999998544443322 2335678888554 66666688899964323333233
Q ss_pred eecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCC---
Q 001039 1002 FLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDA--- 1078 (1179)
Q Consensus 1002 ~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~--- 1078 (1179)
+... ..+..+-. |..|...+.+ .|.+||+.+++.+..+... +|..+.|+++|.+++..+.+ .+.+++.+..
T Consensus 105 i~~~-~~~~~If~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~ 178 (443)
T PF04053_consen 105 IKLP-FSVEKIFG-GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVA 178 (443)
T ss_dssp ---S-S-EEEEE--SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHH
T ss_pred EcCC-cccceEEc-CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcc
Confidence 3222 12333333 6666666544 8999999999999998733 48999999999999998766 5778776541
Q ss_pred -----CcceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEE
Q 001039 1079 -----GGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIA 1153 (1179)
Q Consensus 1079 -----~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~ 1153 (1179)
+....+.....-...|.+..+++..++-.+.. .++-+= .|.. ..+..+ ..++.=+.
T Consensus 179 ~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkYl~-----------~Ge~----~~i~~l---d~~~yllg 239 (443)
T PF04053_consen 179 AIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKYLV-----------NGET----GIIAHL---DKPLYLLG 239 (443)
T ss_dssp HBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEEEE-----------TTEE----EEEEE----SS--EEEE
T ss_pred cccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEEEE-----------cCCc----ceEEEc---CCceEEEE
Confidence 00001111111123333333333333333332 333311 1110 112222 23466667
Q ss_pred EcCCCCEEEEEeCCCcEEEEECC
Q 001039 1154 SDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1154 fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
..++.+.+...+.|+.|..+.++
T Consensus 240 y~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 240 YLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EETTTTEEEEE-TT--EEEEE--
T ss_pred EEccCCEEEEEECCCCEEEEEEC
Confidence 77877889999999999888764
No 361
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.32 E-value=0.00089 Score=79.02 Aligned_cols=122 Identities=16% Similarity=0.190 Sum_probs=86.4
Q ss_pred CcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccC-ceEEEEecCCCEEEEEECCCcEEEEeCCCCCcC
Q 001039 1046 AGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHS-SAILSINAGDHWLGIGAADNSMSLFHRPQERLG 1124 (1179)
Q Consensus 1046 ~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~-~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~ 1124 (1179)
...|.--+++..+++++.|++.|.+++|+-..+. ...++.-.++. ..+.+++++..++|.|+..|.|.++.+.....
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~-~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p- 110 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGE-MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP- 110 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchh-hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC-
Confidence 3445555677789999999999999999977643 22222111222 23356689999999999999999998874211
Q ss_pred cccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001039 1125 GFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1125 ~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
+.. .......+.|...|++++|++|+..+.+|+..|+|..-.+++
T Consensus 111 -----~~~---~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 111 -----RDL---DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred -----Ccc---eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 100 011122235889999999999999999999999998776654
No 362
>PHA02713 hypothetical protein; Provisional
Probab=97.32 E-value=0.016 Score=71.66 Aligned_cols=217 Identities=10% Similarity=0.068 Sum_probs=119.1
Q ss_pred cEEEEECCCCeEEE--EeecCCCcEEEEEEeCCCEEEEEEcC------CeEEEEeCCCCeEEEEeccCCCcEEEEEEcCC
Q 001039 904 SVLVWDKQTSQLLE--ELKGHDAQVSCVRMLSGERVLTASHD------GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS 975 (1179)
Q Consensus 904 ~I~iwd~~t~~~~~--~~~~h~~~V~~l~~s~~~~l~sgs~d------g~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~ 975 (1179)
.+..||..+++... .+.... .-.+++..++..++.||.+ ..+..||..++.....-.-....-......-+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r-~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHI-INYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccc-cceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 46677777665332 111111 1123444467777787753 34778898877543221111111111222336
Q ss_pred CCEEEEEeCCC-----eEEEEeCCCCceeE--EeecCCCCeEEEEEcCCEEEEEeCCC----------------------
Q 001039 976 TGILAAGGRDA-----VANIWDIRAGRQMH--KFLGHTKWIRSIRMDRDTVITGSDDW---------------------- 1026 (1179)
Q Consensus 976 ~~~l~sgs~dg-----~I~iwD~~~~~~~~--~~~~~~~~I~sl~~~~~~l~sgs~dg---------------------- 1026 (1179)
|+..+.||.++ .+..||..+.+-.. .+.........+..++...+.|+.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSS 431 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccccccc
Confidence 77778888654 48889988764322 22222223334456777777777653
Q ss_pred -cEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCC------cEEEEEcCCCCcceEEEeecccCceEEEEec
Q 001039 1027 -TARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDG------LLRFWENDDAGGIKCVKNVTIHSSAILSINA 1099 (1179)
Q Consensus 1027 -~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg------~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~ 1099 (1179)
.+..||..+.+-...-.-........+..-+|+..+.|+.++ .+..||..+...+..+..+...........-
T Consensus 432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~ 511 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH 511 (557)
T ss_pred ceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE
Confidence 477788776644322111111122222233577777776542 3677888762236666555544444445567
Q ss_pred CCCEEEEEECCC--cEEEEeCCCC
Q 001039 1100 GDHWLGIGAADN--SMSLFHRPQE 1121 (1179)
Q Consensus 1100 dg~~lasgs~Dg--~I~iwd~~~~ 1121 (1179)
+|+..++|+.|| ++..||..+.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccc
Confidence 899999999888 7777777644
No 363
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.29 E-value=0.09 Score=63.41 Aligned_cols=204 Identities=13% Similarity=0.031 Sum_probs=120.2
Q ss_pred cCCCCEEEEE-eCCCcEEEEcCCCCCceeEEEec-cccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCc
Q 001039 848 REDAGFFISG-STDCLVKIWDPSLRGSELRATLK-GHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQ 925 (1179)
Q Consensus 848 s~d~~~Lasg-s~Dg~I~lWd~~~~~~~~~~~l~-~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~ 925 (1179)
++||+.+... -..+.+.+.|.+ +.+...++. +.......++++|+++++.+.+. +.+..+..+......
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~e--tmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNs-------E~G~tl~em~a~e~d 271 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAE--TMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNS-------EEGVTLAEMMAAERD 271 (635)
T ss_pred CCCCCEeecccceeEEEEEEECc--cceEEEEEEeCCCcccceECCCCCEEEEeccCc-------ccCcceeeeccccCc
Confidence 4688766433 335778888865 334433332 22223446789999998886422 122222222211111
Q ss_pred EEEEEEe---------CCCEEEEEEcCCeEEEEeCCC----C-eEEEEeccCCCcEEEEEEcCCCCEEEEEe-CCCeEEE
Q 001039 926 VSCVRML---------SGERVLTASHDGTVKMWDVRT----D-TCVATVGRCSSAVLCMEYDDSTGILAAGG-RDAVANI 990 (1179)
Q Consensus 926 V~~l~~s---------~~~~l~sgs~dg~I~iwd~~~----~-~~~~~~~~~~~~v~~l~~sp~~~~l~sgs-~dg~I~i 990 (1179)
..+.|+ +|++... .++.|.+.|..+ + +.+..+ .-......++++|||+++++++ .++++.+
T Consensus 272 -~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSV 347 (635)
T PRK02888 272 -WVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTV 347 (635)
T ss_pred -eEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEE
Confidence 222221 4555444 367899999988 3 444444 3455678899999999988766 4889999
Q ss_pred EeCCCCce------------eEEeecCCCCeEEEEEcC--CEEEEEeCCCcEEEEEccC----------CeeeEEeecCC
Q 001039 991 WDIRAGRQ------------MHKFLGHTKWIRSIRMDR--DTVITGSDDWTARMWSISR----------GTCDAVLACHA 1046 (1179)
Q Consensus 991 wD~~~~~~------------~~~~~~~~~~I~sl~~~~--~~l~sgs~dg~I~iwd~~~----------~~~~~~~~~h~ 1046 (1179)
+|+.+.+. +.+..- ...-...+|++ +...+-..|..|..||+.+ ...+..+.-|-
T Consensus 348 IDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y 426 (635)
T PRK02888 348 IDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHY 426 (635)
T ss_pred EEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCC
Confidence 99987553 222222 12223445554 4777788899999999876 23334344333
Q ss_pred cCEE-----EEEEecCCCEEEEEe
Q 001039 1047 GPVQ-----CVEYSSSDRGIITGS 1065 (1179)
Q Consensus 1047 ~~V~-----~l~~spdg~~l~sgs 1065 (1179)
.+.. +=.-.|||++|++..
T Consensus 427 ~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 427 QPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred ccceeeecCCCcCCCCCCEEEEcc
Confidence 3322 122468899998875
No 364
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.27 E-value=0.57 Score=53.58 Aligned_cols=288 Identities=10% Similarity=0.074 Sum_probs=131.4
Q ss_pred ceEEEecccCceEEEEeecccceeccccccCCCCEEEEEeC-CCcEEEEcCCCCCceeEEEeccc-c-ccEEEEecCCCE
Q 001039 819 NIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGST-DCLVKIWDPSLRGSELRATLKGH-T-RTVRAINSDRGK 895 (1179)
Q Consensus 819 ~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~-Dg~I~lWd~~~~~~~~~~~l~~h-~-~~v~~~s~d~~~ 895 (1179)
.+..|..+.+.-..+-|. --+|.+||+.|+.++. ||.-.+|-++..+.+..+--.+. . ..-..++++++.
T Consensus 22 ~VtrLT~~~~~~h~~YF~-------~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~ 94 (386)
T PF14583_consen 22 RVTRLTPPDGHSHRLYFY-------QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRA 94 (386)
T ss_dssp EEEE-S-TTS-EE---TT-------S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSE
T ss_pred eEEEecCCCCcccceeec-------CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCe
Confidence 444555444433334443 2345688977665554 66655555544455554333321 1 112356899898
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe---CCCEEEEEEc-----------------------CCeEEEE
Q 001039 896 VVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML---SGERVLTASH-----------------------DGTVKMW 949 (1179)
Q Consensus 896 l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s---~~~~l~sgs~-----------------------dg~I~iw 949 (1179)
++-...+..++-.|+++.+....+......+-...|. ++..+ +|.. ...|.-.
T Consensus 95 ~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~-~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i 173 (386)
T PF14583_consen 95 LYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKL-VGIEISREDWKPLTKWKGFREFYEARPHCRIFTI 173 (386)
T ss_dssp EEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEE-EEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred EEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEE-EEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence 8777667789999999988777777667766556664 34443 3321 1346666
Q ss_pred eCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCC-CceeEEeecCCC-CeEEE-EE--cCCEE
Q 001039 950 DVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDA-----VANIWDIRA-GRQMHKFLGHTK-WIRSI-RM--DRDTV 1019 (1179)
Q Consensus 950 d~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg-----~I~iwD~~~-~~~~~~~~~~~~-~I~sl-~~--~~~~l 1019 (1179)
|+.+|+....+ .....+..+.++|....+++=+..| .-+||-+++ +...+.+..+.. .+..= -| ++..+
T Consensus 174 dl~tG~~~~v~-~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i 252 (386)
T PF14583_consen 174 DLKTGERKVVF-EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTI 252 (386)
T ss_dssp ETTT--EEEEE-EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-E
T ss_pred ECCCCceeEEE-ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEE
Confidence 77877754444 4566788999999655554443322 125565543 333344333322 11111 23 44422
Q ss_pred EE-E----eCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCC----------------cEEEEEcCCC
Q 001039 1020 IT-G----SDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDG----------------LLRFWENDDA 1078 (1179)
Q Consensus 1020 ~s-g----s~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg----------------~I~iwd~~~~ 1078 (1179)
.- + +.+..|.-+|..+++...... ..+...+..++||++++-=+.|. -|++++...+
T Consensus 253 ~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~ 330 (386)
T PF14583_consen 253 WYDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAG 330 (386)
T ss_dssp EEEEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTT
T ss_pred EEEeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccC
Confidence 22 1 224456777888776543322 12344556678998876544432 4556777653
Q ss_pred CcceEEEe-------ecc---cCceEEEEecCCCEEEEEE-CCCcEEEEeC
Q 001039 1079 GGIKCVKN-------VTI---HSSAILSINAGDHWLGIGA-ADNSMSLFHR 1118 (1179)
Q Consensus 1079 ~~~~~~~~-------~~~---h~~~i~sis~dg~~lasgs-~Dg~I~iwd~ 1118 (1179)
. ...+.. ..+ ...+-.+++|||++++-.| ..|...||-+
T Consensus 331 ~-~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 331 R-FRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp E-EEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred c-eeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 2 111111 111 1234467899999877544 5666666643
No 365
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.53 Score=50.84 Aligned_cols=270 Identities=11% Similarity=0.014 Sum_probs=155.4
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeEEEEeec-CC-CcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeE---EEEecc
Q 001039 888 AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKG-HD-AQVSCVRMLSGERVLTASHDGTVKMWDVRTDTC---VATVGR 962 (1179)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~-h~-~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~ 962 (1179)
.+.-.+++...+..+.-++|.|+.+...-..+.. .. +...++. -.|++..++..|.-.-+.|+.+.+. ......
T Consensus 91 Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~-vsGn~aYVadlddgfLivdvsdpssP~lagrya~ 169 (370)
T COG5276 91 DVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVY-VSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL 169 (370)
T ss_pred eeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEE-ecCCEEEEeeccCcEEEEECCCCCCceeeeeecc
Confidence 3445677888888888899999977543222211 11 2223332 2688888888777777888876432 233333
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEe--ecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeE
Q 001039 963 CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKF--LGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDA 1040 (1179)
Q Consensus 963 ~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~--~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 1040 (1179)
....-..++.| |++...+..|+-+.+.|+.+.....-+ ......+.++..++++....-.+.-+.+-|..+.+...
T Consensus 170 ~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ssp~ 247 (370)
T COG5276 170 PGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSSPT 247 (370)
T ss_pred CCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEEEecCCCCCce
Confidence 33334556654 667777788999999999765332111 12223788888888876666666678888877766444
Q ss_pred EeecC-CcCEEEE-EEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeC
Q 001039 1041 VLACH-AGPVQCV-EYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHR 1118 (1179)
Q Consensus 1041 ~~~~h-~~~V~~l-~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~ 1118 (1179)
.+... ...+.++ .+.-.+++......+.-+.+-|+.+.........+......-..+...+.++..+..+ +..+-+.
T Consensus 248 ~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay~~y~yiadkn-~g~vV~~ 326 (370)
T COG5276 248 VFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAYGNYNYIADKN-TGAVVDA 326 (370)
T ss_pred EeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEecCeeEeccCC-ceEEEeC
Confidence 43321 1122222 2333466777777777778888877543333333322222333444455566655554 4445555
Q ss_pred CCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1119 PQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1119 ~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
...+. .+ ...+....+.+.+.+-+.+.+.+...+|-+.+|+..
T Consensus 327 s~~s~-----m~----------~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 327 SPPSM-----MD----------KRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred CChhh-----cc----------cccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 43211 11 111222234444455566788889999999999853
No 366
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.14 E-value=0.026 Score=69.55 Aligned_cols=217 Identities=12% Similarity=0.136 Sum_probs=124.0
Q ss_pred CeEEEEeCCCCeEEEEeccC-CCcEEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCceeE--EeecCCCCeEEEEE
Q 001039 944 GTVKMWDVRTDTCVATVGRC-SSAVLCMEYDDSTGILAAGGRD------AVANIWDIRAGRQMH--KFLGHTKWIRSIRM 1014 (1179)
Q Consensus 944 g~I~iwd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~l~sgs~d------g~I~iwD~~~~~~~~--~~~~~~~~I~sl~~ 1014 (1179)
..+..+|..+++......-. ...-.+++. -++...++||.| ..+..||.++++-.. .+............
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l 379 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL 379 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEE-ECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE
Confidence 45677787776543332211 112233333 345778888888 367888988776333 22333344445566
Q ss_pred cCCEEEEEeCCCc-----EEEEEccCCeeeEEeecCCcCEEEE-EEecCCCEEEEEeCCC------cEEEEEcCCCCcce
Q 001039 1015 DRDTVITGSDDWT-----ARMWSISRGTCDAVLACHAGPVQCV-EYSSSDRGIITGSSDG------LLRFWENDDAGGIK 1082 (1179)
Q Consensus 1015 ~~~~l~sgs~dg~-----I~iwd~~~~~~~~~~~~h~~~V~~l-~~spdg~~l~sgs~Dg------~I~iwd~~~~~~~~ 1082 (1179)
++...++|+.||. +-.||..+.+....-. ......+. ...-+|+..++||.++ ++..||..++. +.
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~-W~ 457 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT-WT 457 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc-ee
Confidence 8889999999874 6678876654322211 11122222 2234678888888554 46778877732 44
Q ss_pred EEEeecccCceEEEEecCCCEEEEEECCCc-----EEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCC
Q 001039 1083 CVKNVTIHSSAILSINAGDHWLGIGAADNS-----MSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLE 1157 (1179)
Q Consensus 1083 ~~~~~~~h~~~i~sis~dg~~lasgs~Dg~-----I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspd 1157 (1179)
.+..............-++.+.+.||.|+. |..||..+. .|..+.........+..+++ +
T Consensus 458 ~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~-------------~W~~v~~m~~~rs~~g~~~~--~ 522 (571)
T KOG4441|consen 458 LIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETN-------------QWTMVAPMTSPRSAVGVVVL--G 522 (571)
T ss_pred ecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCC-------------ceeEcccCccccccccEEEE--C
Confidence 444433333333344568888888888763 666776543 35555433333333333333 5
Q ss_pred CCEEEEEeCCC-----cEEEEECCCC
Q 001039 1158 RKRICSGGRNG-----LLRLWEATIN 1178 (1179)
Q Consensus 1158 g~~Lasgs~Dg-----~I~vWdv~tg 1178 (1179)
++..+.||.|| +|..||..++
T Consensus 523 ~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 523 GKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred CEEEEEecccCccccceeEEcCCCCC
Confidence 77788888876 4777777665
No 367
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.13 E-value=1.3 Score=55.20 Aligned_cols=318 Identities=13% Similarity=0.114 Sum_probs=167.9
Q ss_pred ccCceEEEEeecccceeccccccC-CCCEEEEEeCCCcEEEEcCCCCCceeEE-E-ecccc--ccEE--EEecCCCEEEE
Q 001039 826 HAGAITALHCVTKREVWDLVGDRE-DAGFFISGSTDCLVKIWDPSLRGSELRA-T-LKGHT--RTVR--AINSDRGKVVS 898 (1179)
Q Consensus 826 H~~~V~~v~~s~~~~~~~~~~~s~-d~~~Lasgs~Dg~I~lWd~~~~~~~~~~-~-l~~h~--~~v~--~~s~d~~~l~s 898 (1179)
-...|.|+.++|-.. .+ ..++++.|.++..+.+--.. ....... . +.+.. ..|. ++-.|..+|++
T Consensus 529 ~e~evaCLDisp~~d-------~~~~s~~~aVG~Ws~~~~~l~~~-pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlv 600 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGD-------APNKSRLLAVGLWSDISMILTFL-PDLILITHEQLSGEIIPRSILLTTFEGDIHYLLV 600 (1096)
T ss_pred ecceeEEEecccCCC-------CCCcceEEEEEeecceEEEEEEC-CCcceeeeeccCCCccchheeeEEeeccceEEEE
Confidence 356799999986321 11 23478888887776654432 1222211 1 22211 1121 44566899999
Q ss_pred EeCCCcEEEEEC--CCCeEEEEe--ecCCCcEEEEEEe--CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEE
Q 001039 899 GSDDQSVLVWDK--QTSQLLEEL--KGHDAQVSCVRML--SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEY 972 (1179)
Q Consensus 899 gs~dg~I~iwd~--~t~~~~~~~--~~h~~~V~~l~~s--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~ 972 (1179)
+..||.+.-+.+ .+|+.-..- .-...++.--.|+ ..+.+++++ |.-..+|.. +++.+.+--..+.--....|
T Consensus 601 algdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-drP~viY~~-n~kLv~spls~kev~~~c~f 678 (1096)
T KOG1897|consen 601 ALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS-DRPTVIYSS-NGKLVYSPLSLKEVNHMCPF 678 (1096)
T ss_pred EcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC-CCCEEEEec-CCcEEEeccchHHhhhhccc
Confidence 999999876654 444432221 2223455544555 344444444 444455543 34433221111110011112
Q ss_pred cC--CCCEEEEEeCCCeEEEEeCCCCce--eEEeecCCCCeEEEEEcCC--EEEEEe-----------CC---CcEEEEE
Q 001039 973 DD--STGILAAGGRDAVANIWDIRAGRQ--MHKFLGHTKWIRSIRMDRD--TVITGS-----------DD---WTARMWS 1032 (1179)
Q Consensus 973 sp--~~~~l~sgs~dg~I~iwD~~~~~~--~~~~~~~~~~I~sl~~~~~--~l~sgs-----------~d---g~I~iwd 1032 (1179)
+. -...++.+. .+.+.+.-+..-+. ++++. -......+++.+. .+.+.+ .. ..++++|
T Consensus 679 ~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD 756 (1096)
T KOG1897|consen 679 NSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLD 756 (1096)
T ss_pred ccccCCceEEEec-CCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEec
Confidence 21 123344443 34566655543222 12221 1222334444321 111111 11 2367777
Q ss_pred ccCCeeeEEeecC----CcCEEEEEEecC-CCEEEEEe----------CCCcEEEEEcCCCCcceEEEeecccCceEEEE
Q 001039 1033 ISRGTCDAVLACH----AGPVQCVEYSSS-DRGIITGS----------SDGLLRFWENDDAGGIKCVKNVTIHSSAILSI 1097 (1179)
Q Consensus 1033 ~~~~~~~~~~~~h----~~~V~~l~~spd-g~~l~sgs----------~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si 1097 (1179)
-++.+.....+-. .-.|.++.|..| +.++++|. ..|.|.++.....+.++.+.... -.+.+.++
T Consensus 757 ~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~-v~Gav~aL 835 (1096)
T KOG1897|consen 757 QNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV-VKGAVYAL 835 (1096)
T ss_pred CCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee-eccceeeh
Confidence 6666554433211 123555568777 77888876 25788888887744455554433 34556666
Q ss_pred -ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 001039 1098 -NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLW 1173 (1179)
Q Consensus 1098 -s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vW 1173 (1179)
-.+|+++|.- +..|++|++.++ +.++.-..|...+..+...-.|..++.|+--+++.+-
T Consensus 836 ~~fngkllA~I--n~~vrLye~t~~---------------~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll 895 (1096)
T KOG1897|consen 836 VEFNGKLLAGI--NQSVRLYEWTTE---------------RELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLL 895 (1096)
T ss_pred hhhCCeEEEec--CcEEEEEEcccc---------------ceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence 5788888764 468999998744 3344445677778888888888899988877766554
No 368
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.13 E-value=0.2 Score=55.98 Aligned_cols=220 Identities=15% Similarity=0.135 Sum_probs=123.5
Q ss_pred ecCCCEEEEEeCCCcEEEEECC-CCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEe--------
Q 001039 890 NSDRGKVVSGSDDQSVLVWDKQ-TSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATV-------- 960 (1179)
Q Consensus 890 s~d~~~l~sgs~dg~I~iwd~~-t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~-------- 960 (1179)
...++.|+.|+.+| +.+++.. ..+.....+ ...|..+...+.-.++..-.|+.+.++++..-......
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEcCCccEEEEchhhcccccccccccccc
Confidence 45678999999998 8999983 333333332 22388888775333333334599999998764433311
Q ss_pred ------ccCCCcEEEEE--EcCCCCEEEEEeCCCeEEEEeCCCC-----ceeEEeecCCCCeEEEEEcCCEEEEEeCCCc
Q 001039 961 ------GRCSSAVLCME--YDDSTGILAAGGRDAVANIWDIRAG-----RQMHKFLGHTKWIRSIRMDRDTVITGSDDWT 1027 (1179)
Q Consensus 961 ------~~~~~~v~~l~--~sp~~~~l~sgs~dg~I~iwD~~~~-----~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~ 1027 (1179)
......+...+ -...+...++......|.+|..... +..+++. -...+.+++|.++.++.|..++
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~~i~v~~~~~- 158 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGNKICVGTSKG- 158 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCCEEEEEeCCc-
Confidence 11223344444 1223333344444568888877653 3444543 3477889999999998888554
Q ss_pred EEEEEccCCeeeEEeecCC------------cCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEE
Q 001039 1028 ARMWSISRGTCDAVLACHA------------GPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAIL 1095 (1179)
Q Consensus 1028 I~iwd~~~~~~~~~~~~h~------------~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~ 1095 (1179)
..+.|+.++.....+.... .++..+.. +++.+|++. |..-.+.|... ...+ -..+.... ...
T Consensus 159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G-~~~r-~~~i~W~~-~p~ 232 (275)
T PF00780_consen 159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNG-EPSR-KSTIQWSS-APQ 232 (275)
T ss_pred eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCC-CcCc-ccEEEcCC-chh
Confidence 7888998776544432111 12333333 345666643 33333444433 2122 11222222 333
Q ss_pred EEecCCCEEEEEECCCcEEEEeCCCC
Q 001039 1096 SINAGDHWLGIGAADNSMSLFHRPQE 1121 (1179)
Q Consensus 1096 sis~dg~~lasgs~Dg~I~iwd~~~~ 1121 (1179)
++.....+|++.+. +.|.||++.++
T Consensus 233 ~~~~~~pyli~~~~-~~iEV~~~~~~ 257 (275)
T PF00780_consen 233 SVAYSSPYLIAFSS-NSIEVRSLETG 257 (275)
T ss_pred EEEEECCEEEEECC-CEEEEEECcCC
Confidence 44445567776655 55999999844
No 369
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.13 E-value=0.03 Score=68.99 Aligned_cols=213 Identities=16% Similarity=0.176 Sum_probs=125.6
Q ss_pred CcEEEEECCCCeEEEEeec-CCCcEEEEEEeCCCEEEEEEcC------CeEEEEeCCCCeEEEEeccCCCcEEEEE-EcC
Q 001039 903 QSVLVWDKQTSQLLEELKG-HDAQVSCVRMLSGERVLTASHD------GTVKMWDVRTDTCVATVGRCSSAVLCME-YDD 974 (1179)
Q Consensus 903 g~I~iwd~~t~~~~~~~~~-h~~~V~~l~~s~~~~l~sgs~d------g~I~iwd~~~~~~~~~~~~~~~~v~~l~-~sp 974 (1179)
..+..+|..+++......- ....-.+++..++...++||.| .++..||..+++... .......-.... ..-
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~~l 379 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGVAVL 379 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCccccceeEEE
Confidence 4577777777644332211 2233456666688889999988 357889988887443 211111111111 123
Q ss_pred CCCEEEEEeCCC-----eEEEEeCCCCcee--EEeecCCCCeEEEEEcCCEEEEEeCCC------cEEEEEccCCeeeEE
Q 001039 975 STGILAAGGRDA-----VANIWDIRAGRQM--HKFLGHTKWIRSIRMDRDTVITGSDDW------TARMWSISRGTCDAV 1041 (1179)
Q Consensus 975 ~~~~l~sgs~dg-----~I~iwD~~~~~~~--~~~~~~~~~I~sl~~~~~~l~sgs~dg------~I~iwd~~~~~~~~~ 1041 (1179)
+|...++||.|| .+..||..+.+.- ..+...........+++...++|+.++ ++..||..+++....
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~ 459 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI 459 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence 678888999886 4778888765432 222223334455566888888888655 467788777654322
Q ss_pred --eecCCcCEEEEEEecCCCEEEEEeCCCc-----EEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCC---
Q 001039 1042 --LACHAGPVQCVEYSSSDRGIITGSSDGL-----LRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADN--- 1111 (1179)
Q Consensus 1042 --~~~h~~~V~~l~~spdg~~l~sgs~Dg~-----I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg--- 1111 (1179)
+..-..... ++ .-++...+.||.|+. |..+|..+.. +..+.........+.....++...++|+.||
T Consensus 460 ~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~-W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~ 536 (571)
T KOG4441|consen 460 APMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQ-WTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNN 536 (571)
T ss_pred CCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCc-eeEcccCccccccccEEEECCEEEEEecccCccc
Confidence 221111111 22 335777888887763 7778887733 5555444444455545567888888888775
Q ss_pred --cEEEEeCC
Q 001039 1112 --SMSLFHRP 1119 (1179)
Q Consensus 1112 --~I~iwd~~ 1119 (1179)
+|..||..
T Consensus 537 l~~ve~ydp~ 546 (571)
T KOG4441|consen 537 LNTVECYDPE 546 (571)
T ss_pred cceeEEcCCC
Confidence 45566554
No 370
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.12 E-value=0.4 Score=57.25 Aligned_cols=235 Identities=12% Similarity=0.025 Sum_probs=122.0
Q ss_pred EEEEccCCCceeec----cCc---eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccc
Q 001039 773 QSMFSREASSRSHS----FSR---VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLV 845 (1179)
Q Consensus 773 ~~~fSpdg~~las~----~~d---I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~ 845 (1179)
...+||||+++|.+ |++ +++.|+.++.. ....+..... ..+.|.
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~------------------l~d~i~~~~~--~~~~W~--------- 178 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF------------------LPDGIENPKF--SSVSWS--------- 178 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE------------------EEEEEEEEES--EEEEEC---------
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC------------------cCCccccccc--ceEEEe---------
Confidence 45899999998754 344 99999998862 1112222111 227776
Q ss_pred cccCCCCEEEEEeCCC-----------cEEEEcCCCCCceeEEEeccccccE--E--EEecCCCEEEEEeCC----CcEE
Q 001039 846 GDREDAGFFISGSTDC-----------LVKIWDPSLRGSELRATLKGHTRTV--R--AINSDRGKVVSGSDD----QSVL 906 (1179)
Q Consensus 846 ~~s~d~~~Lasgs~Dg-----------~I~lWd~~~~~~~~~~~l~~h~~~v--~--~~s~d~~~l~sgs~d----g~I~ 906 (1179)
+|++.|+-...+. .|+.|++......-...+.+..... . ..+.|+++++..+.. ..+.
T Consensus 179 ---~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~ 255 (414)
T PF02897_consen 179 ---DDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVY 255 (414)
T ss_dssp ---TTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEE
T ss_pred ---CCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEE
Confidence 7777665554332 3788887644444234444443332 2 458999997754322 3577
Q ss_pred EEECCCC-----eEEEEeecCCCcEEEEEEeCCCEEEEEE---cCCeEEEEeCCCCeE---EEEeccCCCcEEEEEEcCC
Q 001039 907 VWDKQTS-----QLLEELKGHDAQVSCVRMLSGERVLTAS---HDGTVKMWDVRTDTC---VATVGRCSSAVLCMEYDDS 975 (1179)
Q Consensus 907 iwd~~t~-----~~~~~~~~h~~~V~~l~~s~~~~l~sgs---~dg~I~iwd~~~~~~---~~~~~~~~~~v~~l~~sp~ 975 (1179)
+.|...+ ..........+....+....+..++... .++.|...++.+... ...+..+...+.-..+...
T Consensus 256 ~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~ 335 (414)
T PF02897_consen 256 LLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF 335 (414)
T ss_dssp EEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE
T ss_pred EEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE
Confidence 8888764 3333333333334445444444444332 346777778877652 3244444443333333344
Q ss_pred CCEEEEE-eCCC--eEEEEeCCCCceeEEeec-CCCCeEEEEEc--CC-EEE-EEeC--CCcEEEEEccCCeee
Q 001039 976 TGILAAG-GRDA--VANIWDIRAGRQMHKFLG-HTKWIRSIRMD--RD-TVI-TGSD--DWTARMWSISRGTCD 1039 (1179)
Q Consensus 976 ~~~l~sg-s~dg--~I~iwD~~~~~~~~~~~~-~~~~I~sl~~~--~~-~l~-sgs~--dg~I~iwd~~~~~~~ 1039 (1179)
+++|+.. ..++ .|+++|+..+.....+.. ..+.|..+..+ .+ ..+ ..|. -+++..||+.+++..
T Consensus 336 ~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 336 KDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp TTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 4445444 3444 688999884444444433 33345555432 22 222 2222 356788888887653
No 371
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.12 E-value=0.26 Score=55.15 Aligned_cols=225 Identities=12% Similarity=0.160 Sum_probs=128.9
Q ss_pred cCCCceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCEEEE
Q 001039 778 REASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGFFIS 856 (1179)
Q Consensus 778 pdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Las 856 (1179)
..|+.++.|..+ +.+++...... ..+... ...|..+... ++-+.|++
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~------------------~~~i~~--~~~I~ql~vl------------~~~~~llv 52 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSK------------------PTRILK--LSSITQLSVL------------PELNLLLV 52 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCcc------------------ceeEee--cceEEEEEEe------------cccCEEEE
Confidence 356677777777 88888832221 122222 2238888887 55566655
Q ss_pred EeCCCcEEEEcCCCCCceeEE------------EeccccccEEEEe----cCCCEEEEEeCCCcEEEEECCCC-----eE
Q 001039 857 GSTDCLVKIWDPSLRGSELRA------------TLKGHTRTVRAIN----SDRGKVVSGSDDQSVLVWDKQTS-----QL 915 (1179)
Q Consensus 857 gs~Dg~I~lWd~~~~~~~~~~------------~l~~h~~~v~~~s----~d~~~l~sgs~dg~I~iwd~~t~-----~~ 915 (1179)
-+ ||.++++++..-...... ........+..++ ..+...++.....+|.+|.+... +.
T Consensus 53 Ls-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~ 131 (275)
T PF00780_consen 53 LS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKL 131 (275)
T ss_pred Ec-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccce
Confidence 54 599999997622111100 0112233444444 34444444555568999887653 45
Q ss_pred EEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCC------------CcEEEEEEcCCCCEEEEEe
Q 001039 916 LEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCS------------SAVLCMEYDDSTGILAAGG 983 (1179)
Q Consensus 916 ~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~------------~~v~~l~~sp~~~~l~sgs 983 (1179)
.+.+.. ...+.+++|. ++.++.|..+ ...+.|+.++.....+.... .++..+.. +++.+|++ .
T Consensus 132 ~ke~~l-p~~~~~i~~~-~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~ 206 (275)
T PF00780_consen 132 LKEISL-PDPPSSIAFL-GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-Y 206 (275)
T ss_pred eEEEEc-CCCcEEEEEe-CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-e
Confidence 555553 3678888888 5566666654 47888998776554432111 22333333 34455554 3
Q ss_pred CCCeEEEEeCCCCceeE--EeecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeec
Q 001039 984 RDAVANIWDIRAGRQMH--KFLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLAC 1044 (1179)
Q Consensus 984 ~dg~I~iwD~~~~~~~~--~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 1044 (1179)
|..-...|. .|+..+ .+. -.....++++...++++.+.+ .|.||++.+++.++++..
T Consensus 207 -~~~g~fv~~-~G~~~r~~~i~-W~~~p~~~~~~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 207 -DNIGVFVNK-NGEPSRKSTIQ-WSSAPQSVAYSSPYLIAFSSN-SIEVRSLETGELVQTIPL 265 (275)
T ss_pred -cceEEEEcC-CCCcCcccEEE-cCCchhEEEEECCEEEEECCC-EEEEEECcCCcEEEEEEC
Confidence 233333343 454433 222 233566777777787777665 599999999999888874
No 372
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.09 E-value=0.12 Score=60.19 Aligned_cols=258 Identities=12% Similarity=0.114 Sum_probs=130.2
Q ss_pred ecCCCEEEEE---------eCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEE
Q 001039 890 NSDRGKVVSG---------SDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVAT 959 (1179)
Q Consensus 890 s~d~~~l~sg---------s~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~ 959 (1179)
|||+++++.. +..+.+.++|+.+++....... ...+....|+ +|+.++-. .++.|.+++..++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEe
Confidence 5677776663 2246789999999876544333 5678888999 56665555 568999999888754433
Q ss_pred eccCC-----------------CcEEEEEEcCCCCEEEEEeCC-Ce----------------------------------
Q 001039 960 VGRCS-----------------SAVLCMEYDDSTGILAAGGRD-AV---------------------------------- 987 (1179)
Q Consensus 960 ~~~~~-----------------~~v~~l~~sp~~~~l~sgs~d-g~---------------------------------- 987 (1179)
..... +.-..+.||||+++|+....| ..
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 22111 123568899999998876432 11
Q ss_pred -EEEEeCCCCceeEE-e----ecCCCCeEEEEEcC--CEEEEE--eCCC---cEEEEEccCCeeeEEee-cCCcCE---E
Q 001039 988 -ANIWDIRAGRQMHK-F----LGHTKWIRSIRMDR--DTVITG--SDDW---TARMWSISRGTCDAVLA-CHAGPV---Q 1050 (1179)
Q Consensus 988 -I~iwD~~~~~~~~~-~----~~~~~~I~sl~~~~--~~l~sg--s~dg---~I~iwd~~~~~~~~~~~-~h~~~V---~ 1050 (1179)
+.++|+.+++.... . ......+..+.|.+ +.++.. ..+. .+.++|..++.+..... ...++| .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 33344433332110 0 11223455566632 223322 2222 35566776665433332 223333 2
Q ss_pred EEEEe-cCCC-EEEEEeCCCcEEEEEcCCCCcceEEEeecccCceE---EEEecCCCEEE-EEECC--CcEEEEeCCCCC
Q 001039 1051 CVEYS-SSDR-GIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAI---LSINAGDHWLG-IGAAD--NSMSLFHRPQER 1122 (1179)
Q Consensus 1051 ~l~~s-pdg~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i---~sis~dg~~la-sgs~D--g~I~iwd~~~~~ 1122 (1179)
...+. +++. ++.....||.-+++-++..+.. ...+....-.| ..++.+++.|. +|..+ +.-.+|.+...
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~--~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~- 315 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK--PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD- 315 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE--EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT-
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccc--eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC-
Confidence 45554 5554 4455557787666655443221 33343334334 55567766554 45442 34445544311
Q ss_pred cCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEE
Q 001039 1123 LGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSG 1164 (1179)
Q Consensus 1123 ~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasg 1164 (1179)
.+.. .+++....+.. ..+.|||||++++-.
T Consensus 316 ------~~~~---~~~LT~~~~~~---~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 316 ------SGGE---PKCLTCEDGDH---YSASFSPDGKYYVDT 345 (353)
T ss_dssp ------ETTE---EEESSTTSSTT---EEEEE-TTSSEEEEE
T ss_pred ------CCCC---eEeccCCCCCc---eEEEECCCCCEEEEE
Confidence 0111 12222222221 789999999987644
No 373
>KOG2432 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.0043 Score=69.28 Aligned_cols=186 Identities=19% Similarity=0.275 Sum_probs=131.1
Q ss_pred CCCCeEEEEEEEeccCCCHHHHHhccCCCCccCCeEEEEEcCCChHHHHHHHHHHHHHHhhccCCCCccHHHHHHhhccc
Q 001039 91 GDGSKIYVSCISFRDPVSEDIAEAYRIPANSFADKCICLVSRSPSFRILRNALEEIYSLCFLSDGSSKPLWDVISHLVSN 170 (1179)
Q Consensus 91 ~~g~~~Yg~cl~f~e~~~~~~~~~~~~~~~~~~~~~icllS~~p~~~~f~~~L~~i~~~~~~~~~~~~~~~~~i~~~l~~ 170 (1179)
.||..+||+.. ....-. .....-|..|++.|+|+.|||.+|+..|..|...++..+ ..-+| .+.+-+..
T Consensus 106 ~d~~ylyG~Vf--fRQ~~D------k~l~RGy~QKSvviis~LPf~~lf~tvl~~iap~yFe~g--t~~ie-aa~~~i~~ 174 (565)
T KOG2432|consen 106 QDGMYLYGFVF--FRQTRD------KTLKRGYFQKSVVIISFLPFFSLFYTVLFQIAPFYFELG--TNAIE-AACCGIDR 174 (565)
T ss_pred CCCceeEEEEe--eeeech------hhhhhhhhhhceEEEEecccccccchHHhhhchHHHhcc--cchhh-hhhccccC
Confidence 46666777764 222111 111234677999999999999999999999988776433 22333 34444555
Q ss_pred CCCCCCCCceEEeeeccceeEEeCCCCCCCCCCCc------------c-------hHHHhccCC--hhhHHHHHHHHhcc
Q 001039 171 VPLPTPGKNRVLFAIENCLLSVEAPPKEGLPHADI------------S-------FQPLVQLLD--VDNLITLFTAVLLE 229 (1179)
Q Consensus 171 ~p~P~pg~~~~~~~~~~~~~~~~~p~~~~lp~~~~------------~-------~~~l~~~l~--~~~~~~l~~~~L~E 229 (1179)
-|.|.||.. ..+.+.++...+..|....+|.... + =..||.++. ...+-+++..+|+.
T Consensus 175 Wp~p~~Gk~-LELPll~c~~KI~lP~a~~~p~~ar~~~~~e~~~~~ts~~~g~vhe~dLf~~~r~v~~QL~tLWELvL~g 253 (565)
T KOG2432|consen 175 WPAPVPGKT-LELPLLGCKKKIRLPTAHSLPFEARKTGAVELRDTNTSVNLGGVHEIDLFRSSRDVNLQLKTLWELVLLG 253 (565)
T ss_pred CCCccCCce-eeecccceeeeeeccccccCcccccccceeeeccCccccccCCcchhHHHHhhHHHHHHHHHHHHHHHhC
Confidence 799999976 5566677777888887777776410 0 124555543 23456788999999
Q ss_pred ccEEEEeCCcchHHHHHHHHHHcccccCCCceeeccc---chhhhh---hccCCcceEEeccCCC
Q 001039 230 RRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLL---FFSGVD---YIDAPTPYMMGLHSGV 288 (1179)
Q Consensus 230 ~~il~~s~~~~~ls~~~~al~~ll~P~~w~~~~IP~l---P~~l~~---~l~aP~P~iiGi~~~~ 288 (1179)
.-|+++...++.=+..+.+++.|+-|+.+.-.+=|+- =....+ -.++|-+-|.||..-+
T Consensus 254 EPilivaptPs~~Se~V~~lv~liaPL~~c~dfRPYFTIHDseF~e~tS~~~sdP~~iLGVTNpF 318 (565)
T KOG2432|consen 254 EPILIVAPTPSHCSEIVQLLVRLIAPLIYCPDFRPYFTIHDSEFREYTSNVDSDPLVILGVTNPF 318 (565)
T ss_pred CCeEEecCCchhhHHHHHHHHHHhhcceeCCCCCceeeeccHHHHHHHhccCCCCceEEecCCHH
Confidence 9999999999999999999999999999987666655 333334 4478888899987644
No 374
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.05 E-value=0.35 Score=55.54 Aligned_cols=210 Identities=13% Similarity=0.220 Sum_probs=129.6
Q ss_pred CcEEEEECCCCeEEEEeec-CCCcEEEEEEe---C-----CCEEEEEEc----------CCeEEEEeCCCC----eEEEE
Q 001039 903 QSVLVWDKQTSQLLEELKG-HDAQVSCVRML---S-----GERVLTASH----------DGTVKMWDVRTD----TCVAT 959 (1179)
Q Consensus 903 g~I~iwd~~t~~~~~~~~~-h~~~V~~l~~s---~-----~~~l~sgs~----------dg~I~iwd~~~~----~~~~~ 959 (1179)
+.|++.|..+.+.+.++.- ....+.+++.. + ..++++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 4688999888887766542 23445555433 2 356776653 288999999884 22222
Q ss_pred e--ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEe-ecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccC
Q 001039 960 V--GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR-QMHKF-LGHTKWIRSIRMDRDTVITGSDDWTARMWSISR 1035 (1179)
Q Consensus 960 ~--~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~-~~~~~-~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~ 1035 (1179)
+ ....++|.+++-- ++. ++++. ++.|.+|++...+ ....- ......+.++...++++++|.....+.++..+.
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence 2 2347788888876 444 54443 4889999998877 43332 223448888988899999999999898886543
Q ss_pred -CeeeEEee--cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCC-----C---cceEEEeecccCceEEEE---e--c
Q 001039 1036 -GTCDAVLA--CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDA-----G---GIKCVKNVTIHSSAILSI---N--A 1099 (1179)
Q Consensus 1036 -~~~~~~~~--~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~-----~---~~~~~~~~~~h~~~i~si---s--~ 1099 (1179)
+..+..+. ....+++++.+-++++.+++++.+|.+.++..... . .......+. ....|.++ + +
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~ 237 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIP 237 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS-
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeee
Confidence 33233332 23556889999877789999999999999987631 1 122333332 23445555 2 3
Q ss_pred --CC------CEEEEEECCCcEEEE
Q 001039 1100 --GD------HWLGIGAADNSMSLF 1116 (1179)
Q Consensus 1100 --dg------~~lasgs~Dg~I~iw 1116 (1179)
.+ ..++.++.+|.|.+.
T Consensus 238 ~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 238 RSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp -SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cCCCCcccccceEEEEecCCEEEEE
Confidence 12 248888899999844
No 375
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.03 E-value=0.033 Score=51.70 Aligned_cols=102 Identities=23% Similarity=0.358 Sum_probs=69.9
Q ss_pred eEEEEeecccceeccccccCC-CCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEE-ecCCCEEEEEeCCCcEEE
Q 001039 830 ITALHCVTKREVWDLVGDRED-AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAI-NSDRGKVVSGSDDQSVLV 907 (1179)
Q Consensus 830 V~~v~~s~~~~~~~~~~~s~d-~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~-s~d~~~l~sgs~dg~I~i 907 (1179)
|+++++.. ++.| .+.|+.||.|..||+|+ +.+.+..+..+ ..|+++ .-.+..++.+..+|+|-+
T Consensus 2 V~al~~~d---------~d~dg~~eLlvGs~D~~IRvf~----~~e~~~Ei~e~-~~v~~L~~~~~~~F~Y~l~NGTVGv 67 (111)
T PF14783_consen 2 VTALCLFD---------FDGDGENELLVGSDDFEIRVFK----GDEIVAEITET-DKVTSLCSLGGGRFAYALANGTVGV 67 (111)
T ss_pred eeEEEEEe---------cCCCCcceEEEecCCcEEEEEe----CCcEEEEEecc-cceEEEEEcCCCEEEEEecCCEEEE
Confidence 67777652 2233 36899999999999998 34555555543 445554 455688999999999999
Q ss_pred EECCCCeEEEEeecCCCcEEEEEEeCC-----CEEEEEEcCCeEEE
Q 001039 908 WDKQTSQLLEELKGHDAQVSCVRMLSG-----ERVLTASHDGTVKM 948 (1179)
Q Consensus 908 wd~~t~~~~~~~~~h~~~V~~l~~s~~-----~~l~sgs~dg~I~i 948 (1179)
|+- .+.+...+... .+.++++.+- ..|++|-.+|.|-+
T Consensus 68 Y~~--~~RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 68 YDR--SQRLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EeC--cceeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 975 34556666433 4677776632 25889988988753
No 376
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.99 E-value=0.015 Score=72.42 Aligned_cols=131 Identities=14% Similarity=0.178 Sum_probs=95.4
Q ss_pred CCCeEEEEeCCCCceeEEeecCCCC-eEEEEEc-------CCEEEEEeCCCcEEEEEccCCe--eeEE-ee--cCCcCEE
Q 001039 984 RDAVANIWDIRAGRQMHKFLGHTKW-IRSIRMD-------RDTVITGSDDWTARMWSISRGT--CDAV-LA--CHAGPVQ 1050 (1179)
Q Consensus 984 ~dg~I~iwD~~~~~~~~~~~~~~~~-I~sl~~~-------~~~l~sgs~dg~I~iwd~~~~~--~~~~-~~--~h~~~V~ 1050 (1179)
....|+-.|+..|+.+..+..+... |..++.+ +...+.|-.+..+..||.+-.. .+.. .. ......+
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 4578999999999999999887754 7777763 3467888889999999988642 2211 11 2345677
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCC
Q 001039 1051 CVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1051 ~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
|++-+.+| +||+|+.+|.||+||--. .+.-..+.+-..+|..+ +.||+||++.+. ..+.+++..
T Consensus 582 ~~aTt~~G-~iavgs~~G~IRLyd~~g---~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t~ 647 (794)
T PF08553_consen 582 CFATTEDG-YIAVGSNKGDIRLYDRLG---KRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDTL 647 (794)
T ss_pred EEEecCCc-eEEEEeCCCcEEeecccc---hhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEEe
Confidence 88877666 689999999999999433 23334455667788666 799999987765 567777763
No 377
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.94 E-value=1.4 Score=52.27 Aligned_cols=75 Identities=12% Similarity=0.253 Sum_probs=59.8
Q ss_pred cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCCCC
Q 001039 1044 CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQE 1121 (1179)
Q Consensus 1044 ~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~ 1121 (1179)
...+.|.+++++|+...++.|+.||.|.+||...+- ... .-..-.....+++|+|..+++|+..|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~--t~~-~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV--TLL-AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe--eee-eeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 467899999999999999999999999999987731 111 111223345777999999999999999999998643
No 378
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=1.4 Score=51.93 Aligned_cols=253 Identities=11% Similarity=0.113 Sum_probs=150.2
Q ss_pred EEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEE-EEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEE-EE
Q 001039 905 VLVWDKQTSQLLEELKGHDAQVSCVRML-SGERV-LTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGIL-AA 981 (1179)
Q Consensus 905 I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l-~s 981 (1179)
+.+++..+.+....+..+. ....+... .+..+ ++-.....+...+................-..++.++.++.+ +.
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence 6666666655555554333 33344444 34333 333333355666555222222222221445677888888744 44
Q ss_pred EeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEc--CCEEEEEeC---CCcEEEEEccCCeeeEEeecCCcCEEEEEEec
Q 001039 982 GGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMD--RDTVITGSD---DWTARMWSISRGTCDAVLACHAGPVQCVEYSS 1056 (1179)
Q Consensus 982 gs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~--~~~l~sgs~---dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~sp 1056 (1179)
...++.|.+.|..+.+......--. ....++++ ++.+.++.. ++++.+.|..+++.......-..+ ..++++|
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred cCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 4456899999988777766653222 44455554 444444443 789999999988888875544445 8999999
Q ss_pred CCCEEEEEe-CCCcEEEEEcCCCCcceEEE------eecccCceEEEEecCCCEEEEEECC---CcEEEEeCCCCCcCcc
Q 001039 1057 SDRGIITGS-SDGLLRFWENDDAGGIKCVK------NVTIHSSAILSINAGDHWLGIGAAD---NSMSLFHRPQERLGGF 1126 (1179)
Q Consensus 1057 dg~~l~sgs-~Dg~I~iwd~~~~~~~~~~~------~~~~h~~~i~sis~dg~~lasgs~D---g~I~iwd~~~~~~~~~ 1126 (1179)
+|..++... .++.|.+.|..... ... ...+.......++++|..+.+.... +.+...|..+......
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~---v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNS---VVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcc---eeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 999766655 78899999977632 221 1112233456778999977665544 5888888764322110
Q ss_pred cCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 001039 1127 SGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGR-NGLLRLWEATI 1177 (1179)
Q Consensus 1127 ~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~-Dg~I~vWdv~t 1177 (1179)
....+.. .-..+..+|+|+.+.+... .+.+.+-|..+
T Consensus 247 -------------~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 247 -------------DLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred -------------ccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 0011111 3456788999998887743 46777777655
No 379
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.87 E-value=2.2 Score=53.39 Aligned_cols=223 Identities=7% Similarity=0.063 Sum_probs=133.0
Q ss_pred eEEEEeCCCCeEEEEeccC----CCcEEEEEEcCC-CCEEEEEeC----------CCeEEEEeCCCCceeEEeec--CCC
Q 001039 945 TVKMWDVRTDTCVATVGRC----SSAVLCMEYDDS-TGILAAGGR----------DAVANIWDIRAGRQMHKFLG--HTK 1007 (1179)
Q Consensus 945 ~I~iwd~~~~~~~~~~~~~----~~~v~~l~~sp~-~~~l~sgs~----------dg~I~iwD~~~~~~~~~~~~--~~~ 1007 (1179)
.++++|-++-+.+...+.. ...+.++.|..| +.++++|+. .|.|.++....++.+..... -.+
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 3677777776665544321 123555568777 677777752 47788887766444433322 234
Q ss_pred CeEEEEE-cCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEe
Q 001039 1008 WIRSIRM-DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKN 1086 (1179)
Q Consensus 1008 ~I~sl~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~ 1086 (1179)
.+.++.. ++.++|. -+..|++|+..+.+.++.-..+..++..+...-.|..+++|+.-+.+.+-..+..+..-....
T Consensus 831 av~aL~~fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evA 908 (1096)
T KOG1897|consen 831 AVYALVEFNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVA 908 (1096)
T ss_pred ceeehhhhCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEee
Confidence 4555543 5555544 366899999998877777777889999999999999999999888888766555321111112
Q ss_pred ecccCceEEEEe-cCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccc----cceeee--ecCCCcccEEEE--EEcCC
Q 001039 1087 VTIHSSAILSIN-AGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMS----GWQLYR--TPQKTVAVVRCI--ASDLE 1157 (1179)
Q Consensus 1087 ~~~h~~~i~sis-~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~----~~~~~~--~~~~h~~~V~~v--~fspd 1157 (1179)
-..+..+..++. -++...+.+..+|.+.+...++.... ..+...- .|.+-. ....|..-|.++ .-+|-
T Consensus 909 rD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~t---d~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~~ 985 (1096)
T KOG1897|consen 909 RDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSDATT---DEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIPL 985 (1096)
T ss_pred hhhCccceeeEEEecCceEEeecccccEEEEEecCCCCc---hhhhhcccceeeEEeccceeeeeecceEeeccccccCC
Confidence 223556666663 56777777888899988876532110 0111111 111111 011344444441 23455
Q ss_pred CCEEEEEeCCCcEEE
Q 001039 1158 RKRICSGGRNGLLRL 1172 (1179)
Q Consensus 1158 g~~Lasgs~Dg~I~v 1172 (1179)
+..+..|..+|+|-+
T Consensus 986 ~~~vlfgTv~GsIG~ 1000 (1096)
T KOG1897|consen 986 EPKVLFGTVNGSIGI 1000 (1096)
T ss_pred CCcEEEEEccceEEE
Confidence 556778888888754
No 380
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.83 E-value=0.00048 Score=80.04 Aligned_cols=196 Identities=12% Similarity=0.198 Sum_probs=124.1
Q ss_pred CcEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCcee--EEeecCCCCeEEEEEcC---CEEEEEe----CCCcEEEEEc
Q 001039 965 SAVLCMEYDDS--TGILAAGGRDAVANIWDIRAGRQM--HKFLGHTKWIRSIRMDR---DTVITGS----DDWTARMWSI 1033 (1179)
Q Consensus 965 ~~v~~l~~sp~--~~~l~sgs~dg~I~iwD~~~~~~~--~~~~~~~~~I~sl~~~~---~~l~sgs----~dg~I~iwd~ 1033 (1179)
..+.|+++.-+ ...+++|..+|.|.+-..+...-- ....++....++++|++ +.||+|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 34566665543 347888999999999888764332 23456778899999954 4677764 3567999999
Q ss_pred cCC--eee--EEeec-CCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEec-CCCEEEEE
Q 001039 1034 SRG--TCD--AVLAC-HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINA-GDHWLGIG 1107 (1179)
Q Consensus 1034 ~~~--~~~--~~~~~-h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~-dg~~lasg 1107 (1179)
.++ .+. ..+.+ ......+++|..+.+.+.+|.....+.++|++-.. .....+......-..++| .+.++++-
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~--~~~~svnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL--DSVSSVNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh--hhhhhhhhhhcccceecCCCCCceecc
Confidence 876 222 12222 34456689999999999999999999999988311 111111111111234555 77888776
Q ss_pred ECCCcEEEEeCCCCCcCcccCCCCccccceeeeecC----CCcccEEEEEEcCCCC-EEEEEeC-CCcEEEEECC
Q 001039 1108 AADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQ----KTVAVVRCIASDLERK-RICSGGR-NGLLRLWEAT 1176 (1179)
Q Consensus 1108 s~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~----~h~~~V~~v~fspdg~-~Lasgs~-Dg~I~vWdv~ 1176 (1179)
. ||.|.+||.... . . .++.... .....+..++|+|... .+++.+. .++|+.+++.
T Consensus 215 ~-dg~iAiwD~~rn-i------e------npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRN-I------E------NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c-cCceeeccchhh-h------c------cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 5 999999995311 0 0 1111111 1223588999999543 4566655 4689998874
No 381
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.75 E-value=0.29 Score=57.42 Aligned_cols=221 Identities=13% Similarity=0.166 Sum_probs=117.3
Q ss_pred ceEEEEEccCCCceeeccCc--eEeeeCCCCCCCC-CCCCCCCC-----------CCC------------cccccceEEE
Q 001039 770 SWVQSMFSREASSRSHSFSR--VRKWTSDAANENG-TPRKQDST-----------AGG------------KKIQSNIRII 823 (1179)
Q Consensus 770 ~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~-~~~~~~~~-----------~~~------------~~~~~~~~~l 823 (1179)
.|..+.|+++..-+|.|... |.+|.....+..+ ........ .+. ++--.+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47788999997777766555 6666555443322 00000000 000 0111244556
Q ss_pred ecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEE--ecc------ccccEEEE------
Q 001039 824 RGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRAT--LKG------HTRTVRAI------ 889 (1179)
Q Consensus 824 ~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~--l~~------h~~~v~~~------ 889 (1179)
+..+++|++++.| |=.++|.|..+|.+.|.|++ +...+.. +.. ....++++
T Consensus 83 ~~~~g~vtal~~S-------------~iGFvaigy~~G~l~viD~R--GPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~ 147 (395)
T PF08596_consen 83 DAKQGPVTALKNS-------------DIGFVAIGYESGSLVVIDLR--GPAVIYNENIRESFLSKSSSSYVTSIEFSVMT 147 (395)
T ss_dssp ---S-SEEEEEE--------------BTSEEEEEETTSEEEEEETT--TTEEEEEEEGGG--T-SS----EEEEEEEEEE
T ss_pred eccCCcEeEEecC-------------CCcEEEEEecCCcEEEEECC--CCeEEeeccccccccccccccCeeEEEEEEEe
Confidence 6678999999985 67899999999999999986 4444332 222 12233332
Q ss_pred -ecCC---CEEEEEeCCCcEEEEECC--C-CeE----EEEeecCCCcEEEEEEe--C-----------------C---CE
Q 001039 890 -NSDR---GKVVSGSDDQSVLVWDKQ--T-SQL----LEELKGHDAQVSCVRML--S-----------------G---ER 936 (1179)
Q Consensus 890 -s~d~---~~l~sgs~dg~I~iwd~~--t-~~~----~~~~~~h~~~V~~l~~s--~-----------------~---~~ 936 (1179)
..|+ -.+++|+..|.+.+|.+. . +.. ......+.+.|..+... + + ..
T Consensus 148 ~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g 227 (395)
T PF08596_consen 148 LGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPG 227 (395)
T ss_dssp -TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----E
T ss_pred cCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCc
Confidence 1233 468899999999999764 1 221 22222455666555432 1 0 12
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEc-----CCCCEEEEEeCCCeEEEEeCCCCceeEEeecC
Q 001039 937 VLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYD-----DSTGILAAGGRDAVANIWDIRAGRQMHKFLGH 1005 (1179)
Q Consensus 937 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~s-----p~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~ 1005 (1179)
++....+..++++...+.+..............+.+- ..+..|++-..+|.++++.+..-+.+....-.
T Consensus 228 ~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~ 301 (395)
T PF08596_consen 228 YVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP 301 (395)
T ss_dssp EEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S
T ss_pred EEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC
Confidence 4555667889999998887766654332233344442 35667888889999999999988888776543
No 382
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.72 E-value=0.62 Score=54.51 Aligned_cols=80 Identities=16% Similarity=0.133 Sum_probs=59.1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEE-E---EEc-C------------C----EEEEE
Q 001039 964 SSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRS-I---RMD-R------------D----TVITG 1022 (1179)
Q Consensus 964 ~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~s-l---~~~-~------------~----~l~sg 1022 (1179)
...+.+++.+|++++.++...-|.|.++|+.++..++.++|..+.-.. + .-. . . +++-+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 345788999999999999888899999999999888888776542211 1 111 1 1 34556
Q ss_pred eCCCcEEEEEccCCeeeEEee
Q 001039 1023 SDDWTARMWSISRGTCDAVLA 1043 (1179)
Q Consensus 1023 s~dg~I~iwd~~~~~~~~~~~ 1043 (1179)
-.-|.|.||++++|..+..+.
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEE
Confidence 678999999999888776665
No 383
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.67 E-value=2.3 Score=50.78 Aligned_cols=229 Identities=11% Similarity=0.091 Sum_probs=124.3
Q ss_pred EEecCCCEEEEE-eCCC----cEEEEECCCCeEEEEe-ecCCCcEEEEEEe-CCCEEEEEEcCC-----------eEEEE
Q 001039 888 AINSDRGKVVSG-SDDQ----SVLVWDKQTSQLLEEL-KGHDAQVSCVRML-SGERVLTASHDG-----------TVKMW 949 (1179)
Q Consensus 888 ~~s~d~~~l~sg-s~dg----~I~iwd~~t~~~~~~~-~~h~~~V~~l~~s-~~~~l~sgs~dg-----------~I~iw 949 (1179)
+++|+|++++.+ +..| ++++.|+.+|+.+... ... ....+.|. +++.++....+. .|..|
T Consensus 130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 578999998865 3333 5999999999876532 221 12238898 556665554332 37888
Q ss_pred eCCCCeE--EEEeccCCC-c-EEEEEEcCCCCEEEEEeC---C-CeEEEEeCCCC----ceeEEeecC-CCCeEEEEEcC
Q 001039 950 DVRTDTC--VATVGRCSS-A-VLCMEYDDSTGILAAGGR---D-AVANIWDIRAG----RQMHKFLGH-TKWIRSIRMDR 1016 (1179)
Q Consensus 950 d~~~~~~--~~~~~~~~~-~-v~~l~~sp~~~~l~sgs~---d-g~I~iwD~~~~----~~~~~~~~~-~~~I~sl~~~~ 1016 (1179)
.+.+... ...+..... . ...+..++++++++.... + ..+.+.|+..+ .....+... .+....+...+
T Consensus 208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~ 287 (414)
T PF02897_consen 208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHG 287 (414)
T ss_dssp ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEET
T ss_pred ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccC
Confidence 8877643 233333222 2 678889999999876543 2 35788888875 233333333 33444555556
Q ss_pred CEEEEEe----CCCcEEEEEccCCee---eEEeecCCcCEEEEEEecCCCEEEEEe-CCC--cEEEEEcC-CCCcceEEE
Q 001039 1017 DTVITGS----DDWTARMWSISRGTC---DAVLACHAGPVQCVEYSSSDRGIITGS-SDG--LLRFWEND-DAGGIKCVK 1085 (1179)
Q Consensus 1017 ~~l~sgs----~dg~I~iwd~~~~~~---~~~~~~h~~~V~~l~~spdg~~l~sgs-~Dg--~I~iwd~~-~~~~~~~~~ 1085 (1179)
+.+..-+ .++.|...++.+... ...+..+...+.-..+...+++|+... .++ .|+++++. + .....
T Consensus 288 ~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~---~~~~~ 364 (414)
T PF02897_consen 288 DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG---KESRE 364 (414)
T ss_dssp TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T---EEEEE
T ss_pred CEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC---cEEee
Confidence 6433332 345677778877652 335555655433333444455555444 444 47888888 3 22222
Q ss_pred eecccCceEEEEe--cCCCEEEE--EEC--CCcEEEEeCCCC
Q 001039 1086 NVTIHSSAILSIN--AGDHWLGI--GAA--DNSMSLFHRPQE 1121 (1179)
Q Consensus 1086 ~~~~h~~~i~sis--~dg~~las--gs~--Dg~I~iwd~~~~ 1121 (1179)
......+.+..++ ++++.+.. .|. -+++..||+.++
T Consensus 365 ~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 365 IPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp EESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred ecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 2222334455554 44443332 222 257778887744
No 384
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.65 E-value=0.00053 Score=79.67 Aligned_cols=183 Identities=14% Similarity=0.212 Sum_probs=119.0
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeE--EEEeecCCCcEEEEEEe--CCCEEEEEE----cCCeEEEEeCCCC--eEE--EE
Q 001039 892 DRGKVVSGSDDQSVLVWDKQTSQL--LEELKGHDAQVSCVRML--SGERVLTAS----HDGTVKMWDVRTD--TCV--AT 959 (1179)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~~~--~~~~~~h~~~V~~l~~s--~~~~l~sgs----~dg~I~iwd~~~~--~~~--~~ 959 (1179)
+...++.|..+|.|.+-.+....- .....++....++++|+ |.+.+++|- .|..+.|||+.++ .+. ..
T Consensus 69 d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~ 148 (783)
T KOG1008|consen 69 DRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPL 148 (783)
T ss_pred chhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccc
Confidence 345678888899998887764322 23456778889999998 557777773 3677999999887 221 11
Q ss_pred ecc-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-eeEEeecCCCCeEEEEE---cCCEEEEEeCCCcEEEEEc-
Q 001039 960 VGR-CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGR-QMHKFLGHTKWIRSIRM---DRDTVITGSDDWTARMWSI- 1033 (1179)
Q Consensus 960 ~~~-~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~-~~~~~~~~~~~I~sl~~---~~~~l~sgs~dg~I~iwd~- 1033 (1179)
+.+ ......+++|..+.+.+.+|.....+.++|++... .... -.+..+..+.+ .++++++-. ||.|.+||.
T Consensus 149 fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s--vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~ 225 (783)
T KOG1008|consen 149 FSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS--VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTY 225 (783)
T ss_pred cccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh--hhhhhcccceecCCCCCceeccc-cCceeeccch
Confidence 222 33456689999999999999999999999998432 1211 12223344444 567777665 999999993
Q ss_pred cCCe-eeEEeecC----CcCEEEEEEecCCCE-EEEEe-CCCcEEEEEcCC
Q 001039 1034 SRGT-CDAVLACH----AGPVQCVEYSSSDRG-IITGS-SDGLLRFWENDD 1077 (1179)
Q Consensus 1034 ~~~~-~~~~~~~h----~~~V~~l~~spdg~~-l~sgs-~Dg~I~iwd~~~ 1077 (1179)
++-+ ++..+... ...+..++|.|...- +++.+ ..++|+.+|+..
T Consensus 226 rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 226 RNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred hhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 3322 22222211 224899999996432 33443 567899998864
No 385
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.63 E-value=1.3 Score=48.15 Aligned_cols=173 Identities=9% Similarity=-0.009 Sum_probs=112.0
Q ss_pred ecCCCEEEEEeCCC--cEEEEECCCCeEEEEeecCC-CcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCc
Q 001039 890 NSDRGKVVSGSDDQ--SVLVWDKQTSQLLEELKGHD-AQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSA 966 (1179)
Q Consensus 890 s~d~~~l~sgs~dg--~I~iwd~~t~~~~~~~~~h~-~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~ 966 (1179)
..+|..+-+.+.-| .|+.+|+.+|+......-.. ----.++..++......-.++...+||..+.+.+.++.- .+.
T Consensus 53 ~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~E 131 (264)
T PF05096_consen 53 LDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPY-PGE 131 (264)
T ss_dssp EETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS
T ss_pred cCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEec-CCc
Confidence 45667777777666 78999999999877654332 222344555555555666789999999999998888743 344
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC--C---CCeEEEEE-cCCEEEEEeCCCcEEEEEccCCeeeE
Q 001039 967 VLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH--T---KWIRSIRM-DRDTVITGSDDWTARMWSISRGTCDA 1040 (1179)
Q Consensus 967 v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~--~---~~I~sl~~-~~~~l~sgs~dg~I~iwd~~~~~~~~ 1040 (1179)
=+.++ .+++.|+.......++.+|..+.+..+++... . ..++-+.+ ++...|-.-....|...|..+|+...
T Consensus 132 GWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 132 GWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp --EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEE
T ss_pred ceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEE
Confidence 46666 45667777777889999999988777665432 2 24555666 45455555566778888999998877
Q ss_pred Eeec---------------CCcCEEEEEEecCCCEEEEEe
Q 001039 1041 VLAC---------------HAGPVQCVEYSSSDRGIITGS 1065 (1179)
Q Consensus 1041 ~~~~---------------h~~~V~~l~~spdg~~l~sgs 1065 (1179)
.+.. ...-.+.++++|.++.+...+
T Consensus 210 ~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 210 WIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 6531 134589999998877665554
No 386
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.62 E-value=0.0037 Score=45.09 Aligned_cols=38 Identities=24% Similarity=0.481 Sum_probs=33.0
Q ss_pred eeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001039 1137 QLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWE 1174 (1179)
Q Consensus 1137 ~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWd 1174 (1179)
.+......|...|++++|++++..+++++.||.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34455567888999999999999999999999999996
No 387
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.077 Score=61.23 Aligned_cols=140 Identities=12% Similarity=0.137 Sum_probs=96.1
Q ss_pred EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCE-------EEEEeCCCcEEEEEcCCCCcceEEEeeccc
Q 001039 1018 TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRG-------IITGSSDGLLRFWENDDAGGIKCVKNVTIH 1090 (1179)
Q Consensus 1018 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~-------l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h 1090 (1179)
++.++.....++-.|+..|+.+.++..+.. |+-+.+.|+.+. -+.|-+|..|.-||.+-.+. ..+...++|
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-~kl~~~q~k 425 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-NKLAVVQSK 425 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc-ceeeeeecc
Confidence 556667777899999999999999997776 777777776543 24566788899999885332 223223333
Q ss_pred Cc----eEEEE-ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEe
Q 001039 1091 SS----AILSI-NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGG 1165 (1179)
Q Consensus 1091 ~~----~i~si-s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs 1165 (1179)
.- ...|+ .....+||+||.+|.|++||.... .....+.+-..+|..|..+.||++|+..+
T Consensus 426 qy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~---------------~AKTAlPgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGR---------------RAKTALPGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred ccccccccceeeecCCceEEEeecCCcEEeehhhhh---------------hhhhcccccCCceeeEEeeccCcEEEEec
Confidence 21 12333 456678999999999999997422 22233556678899999999999987555
Q ss_pred CCCcEEEEEC
Q 001039 1166 RNGLLRLWEA 1175 (1179)
Q Consensus 1166 ~Dg~I~vWdv 1175 (1179)
+..+.+-++
T Consensus 491 -~tyLlLi~t 499 (644)
T KOG2395|consen 491 -KTYLLLIDT 499 (644)
T ss_pred -ccEEEEEEE
Confidence 445555443
No 388
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=1.9 Score=50.79 Aligned_cols=189 Identities=16% Similarity=0.163 Sum_probs=127.2
Q ss_pred EEecCCCEEEE-EeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEc---CCeEEEEeCCCCeEEEEecc
Q 001039 888 AINSDRGKVVS-GSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASH---DGTVKMWDVRTDTCVATVGR 962 (1179)
Q Consensus 888 ~~s~d~~~l~s-gs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~---dg~I~iwd~~~~~~~~~~~~ 962 (1179)
++++.+..++. ...++.|.+.|..+.+......... ....++++ +++.+.++.. ++++.+.|..+++...+...
T Consensus 80 ~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v 158 (381)
T COG3391 80 AVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV 158 (381)
T ss_pred eeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec
Confidence 56777775544 4456899999988877777665333 45567777 5656655544 78999999999998888644
Q ss_pred CCCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeE-E---eecCCCCeEEEEE--cCCEEEEEe-CC--CcEEEEE
Q 001039 963 CSSAVLCMEYDDSTGILAAGG-RDAVANIWDIRAGRQMH-K---FLGHTKWIRSIRM--DRDTVITGS-DD--WTARMWS 1032 (1179)
Q Consensus 963 ~~~~v~~l~~sp~~~~l~sgs-~dg~I~iwD~~~~~~~~-~---~~~~~~~I~sl~~--~~~~l~sgs-~d--g~I~iwd 1032 (1179)
...+ ..++++|+|+.+.... .++.|.+.|..+..... . ..........+.+ ++..+.+.. .+ +.+...|
T Consensus 159 G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id 237 (381)
T COG3391 159 GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKID 237 (381)
T ss_pred CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEe
Confidence 4444 8999999999666655 78899999977665553 1 0111122234444 555443333 22 6899999
Q ss_pred ccCCeeeEEeecCCc-CEEEEEEecCCCEEEEEeC-CCcEEEEEcCCC
Q 001039 1033 ISRGTCDAVLACHAG-PVQCVEYSSSDRGIITGSS-DGLLRFWENDDA 1078 (1179)
Q Consensus 1033 ~~~~~~~~~~~~h~~-~V~~l~~spdg~~l~sgs~-Dg~I~iwd~~~~ 1078 (1179)
..++.....-..-.. ....+..+|+|+.+.+... .+.+.+.|..+.
T Consensus 238 ~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 238 TATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred CCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 888876665221111 5667899999999888754 478888888773
No 389
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.44 E-value=0.05 Score=67.97 Aligned_cols=142 Identities=14% Similarity=0.206 Sum_probs=100.4
Q ss_pred CCCCEEEEE-eCCCcEEEEcCCCCCceeEEEecccccc-EEEEecC-------CCEEEEEeCCCcEEEEECCCC--eEEE
Q 001039 849 EDAGFFISG-STDCLVKIWDPSLRGSELRATLKGHTRT-VRAINSD-------RGKVVSGSDDQSVLVWDKQTS--QLLE 917 (1179)
Q Consensus 849 ~d~~~Lasg-s~Dg~I~lWd~~~~~~~~~~~l~~h~~~-v~~~s~d-------~~~l~sgs~dg~I~iwd~~t~--~~~~ 917 (1179)
.|.++|+.. .....|+-.|++ .++++..+..|... |..+.|+ +...+.|-.+..+..||.+-. +++.
T Consensus 491 ~d~~mil~~~~~~~~ly~mDLe--~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~ 568 (794)
T PF08553_consen 491 QDRNMILLDPNNPNKLYKMDLE--RGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD 568 (794)
T ss_pred cccceEeecCCCCCceEEEecC--CCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee
Confidence 455555443 344667666755 67777888777655 7777664 345677888889999998753 2332
Q ss_pred E-e--ecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 001039 918 E-L--KGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDI 993 (1179)
Q Consensus 918 ~-~--~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~ 993 (1179)
. . .......+|++-+.+.+||+|+.+|.|++||--..+....+.+...+|.+|..+.||+++++.+. ..+.+++.
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred ccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 1 1 12345678888888889999999999999995433333445567899999999999999987764 57777775
No 390
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.38 E-value=2 Score=46.86 Aligned_cols=194 Identities=12% Similarity=0.174 Sum_probs=107.8
Q ss_pred EEeccccccEEE--EecCCC-EEEEEeCCCcEEEEECCCCeEEEEeecC-CCcEEEEEEeCCCEEEEEE-cCCeEEEEeC
Q 001039 877 ATLKGHTRTVRA--INSDRG-KVVSGSDDQSVLVWDKQTSQLLEELKGH-DAQVSCVRMLSGERVLTAS-HDGTVKMWDV 951 (1179)
Q Consensus 877 ~~l~~h~~~v~~--~s~d~~-~l~sgs~dg~I~iwd~~t~~~~~~~~~h-~~~V~~l~~s~~~~l~sgs-~dg~I~iwd~ 951 (1179)
+.+.+-...+.. +.|+.+ .+++....+.|...+. +|+.++.+.-. .+..-.+++..++.++... .++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 345555555664 467655 4555566788888886 58888877544 3567888888666666666 4888998888
Q ss_pred CCCe------EEEEec-----cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CceeEEe--------ecCCCCe
Q 001039 952 RTDT------CVATVG-----RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRA---GRQMHKF--------LGHTKWI 1009 (1179)
Q Consensus 952 ~~~~------~~~~~~-----~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~---~~~~~~~--------~~~~~~I 1009 (1179)
.... ....+. .++..+-.++|++.++.++++-...-..+|.++. ...+... ......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 3321 112221 2456789999999888888887666666666543 2221111 1233456
Q ss_pred EEEEEcCC---EEEEEeCCCcEEEEEccCCeeeEEeecCC---------cCEEEEEEecCCCEEEEEeCCCcEEEE
Q 001039 1010 RSIRMDRD---TVITGSDDWTARMWSISRGTCDAVLACHA---------GPVQCVEYSSSDRGIITGSSDGLLRFW 1073 (1179)
Q Consensus 1010 ~sl~~~~~---~l~sgs~dg~I~iwd~~~~~~~~~~~~h~---------~~V~~l~~spdg~~l~sgs~Dg~I~iw 1073 (1179)
.++++++. +++....+..|..+| .+|+.+..+.-.. ...-.|+|+++|+..+++ +-+..+++
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 78888654 777788888999999 6777776655322 257789999998765554 55544443
No 391
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.38 E-value=0.12 Score=61.14 Aligned_cols=169 Identities=10% Similarity=0.060 Sum_probs=99.3
Q ss_pred EEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEe---CC-CeEEEEeCCCCceeEEee--cCCCCeEEEEEcCC-E
Q 001039 946 VKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGG---RD-AVANIWDIRAGRQMHKFL--GHTKWIRSIRMDRD-T 1018 (1179)
Q Consensus 946 I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs---~d-g~I~iwD~~~~~~~~~~~--~~~~~I~sl~~~~~-~ 1018 (1179)
+.+-|.. |.....+......+..-+|+|++..++-.. .. ..+.++|+.+++...... ++. .....+.++. .
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~-~~P~fspDG~~l 252 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN-GAPAFSPDGSKL 252 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc-CCccCCCCCCEE
Confidence 3444433 444555555566777788999988765542 22 469999999887655443 222 2233344555 4
Q ss_pred EEEEeCCCc--EEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEe-CCCc--EEEEEcCCCCcceEEEeecccCce
Q 001039 1019 VITGSDDWT--ARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGS-SDGL--LRFWENDDAGGIKCVKNVTIHSSA 1093 (1179)
Q Consensus 1019 l~sgs~dg~--I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs-~Dg~--I~iwd~~~~~~~~~~~~~~~h~~~ 1093 (1179)
+++...||. |.+.|+.++...+ +....+.-+.=.|+|||++++-.+ ..|. |.+.|.+... ....+..+....
T Consensus 253 ~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~--~~riT~~~~~~~ 329 (425)
T COG0823 253 AFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ--VTRLTFSGGGNS 329 (425)
T ss_pred EEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc--eeEeeccCCCCc
Confidence 555566665 6666777766333 443333334568999999988765 4454 4445555432 223333333444
Q ss_pred EEEEecCCCEEEEEECC-Cc--EEEEeCC
Q 001039 1094 ILSINAGDHWLGIGAAD-NS--MSLFHRP 1119 (1179)
Q Consensus 1094 i~sis~dg~~lasgs~D-g~--I~iwd~~ 1119 (1179)
.-.++|||++++..+.. |. |.+.|+.
T Consensus 330 ~p~~SpdG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 330 NPVWSPDGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred CccCCCCCCEEEEEeccCCceeeEEeccC
Confidence 56678999999987743 44 5555554
No 392
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.37 E-value=2 Score=49.68 Aligned_cols=217 Identities=13% Similarity=0.135 Sum_probs=107.7
Q ss_pred CCCEEEEEe-CCCcEEEEECCC----CeEEEEeec---CC-CcE---EEE-EEeCCCEEEEEE--c----CCeEEEEeCC
Q 001039 892 DRGKVVSGS-DDQSVLVWDKQT----SQLLEELKG---HD-AQV---SCV-RMLSGERVLTAS--H----DGTVKMWDVR 952 (1179)
Q Consensus 892 d~~~l~sgs-~dg~I~iwd~~t----~~~~~~~~~---h~-~~V---~~l-~~s~~~~l~sgs--~----dg~I~iwd~~ 952 (1179)
+.++|+..+ ..+.|.|.|+.+ .+..++++. +. ... ..+ +..+|+.++++- . -|.+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 678999999874 355555543 11 111 111 112566777652 2 3568888888
Q ss_pred CCeEEEEeccC---CCcEEEEEEcCCCCEEEEEeC--------------------CCeEEEEeCCCCceeEEeecCCC--
Q 001039 953 TDTCVATVGRC---SSAVLCMEYDDSTGILAAGGR--------------------DAVANIWDIRAGRQMHKFLGHTK-- 1007 (1179)
Q Consensus 953 ~~~~~~~~~~~---~~~v~~l~~sp~~~~l~sgs~--------------------dg~I~iwD~~~~~~~~~~~~~~~-- 1007 (1179)
+.+........ ..--..+.|.|..+.+++... ..++.+||+.+.+.++++.-...
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 87777666432 223456778888888887642 35799999999999988764432
Q ss_pred CeEEEEE--cCC---EEEEEeCCCcEEEEE-ccCCee----eEEeec-----C------------CcCEEEEEEecCCCE
Q 001039 1008 WIRSIRM--DRD---TVITGSDDWTARMWS-ISRGTC----DAVLAC-----H------------AGPVQCVEYSSSDRG 1060 (1179)
Q Consensus 1008 ~I~sl~~--~~~---~l~sgs~dg~I~iwd-~~~~~~----~~~~~~-----h------------~~~V~~l~~spdg~~ 1060 (1179)
....+.| +++ -++.+.-.++|..|- .+.++- +..+.. - ..-|+.+..|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 3445666 443 344444445554443 344432 112211 0 234799999999999
Q ss_pred EEEEe-CCCcEEEEEcCCCCcceEEEeeccc------------------CceEEEEecCCCEEEEEE
Q 001039 1061 IITGS-SDGLLRFWENDDAGGIKCVKNVTIH------------------SSAILSINAGDHWLGIGA 1108 (1179)
Q Consensus 1061 l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~h------------------~~~i~sis~dg~~lasgs 1108 (1179)
|.... .+|.|+.||+.+....+....+.-. ....+.+|.||+.|...+
T Consensus 326 LYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 98776 6999999999987766666543211 113467788998887764
No 393
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.36 E-value=1 Score=50.83 Aligned_cols=211 Identities=11% Similarity=0.070 Sum_probs=114.8
Q ss_pred CCCC-EEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecC-----
Q 001039 849 EDAG-FFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGH----- 922 (1179)
Q Consensus 849 ~d~~-~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h----- 922 (1179)
++.. ++++--..+.|.-|+.. .+........+....+..+.. +..|+++.. -+.+++.+++..+..+...
T Consensus 34 ~~~~~L~w~DI~~~~i~r~~~~-~g~~~~~~~p~~~~~~~~~d~-~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~ 109 (307)
T COG3386 34 PDRGALLWVDILGGRIHRLDPE-TGKKRVFPSPGGFSSGALIDA-GGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLP 109 (307)
T ss_pred CCCCEEEEEeCCCCeEEEecCC-cCceEEEECCCCcccceeecC-CCeEEEEcc--ccEEEeccCCceeEEeccccCCCC
Confidence 5555 55566667889999875 222322333333322222333 334444432 3566776666553332211
Q ss_pred CCcEEEEEEeCCCEEEEEEcC------------CeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC-CeEE
Q 001039 923 DAQVSCVRMLSGERVLTASHD------------GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD-AVAN 989 (1179)
Q Consensus 923 ~~~V~~l~~s~~~~l~sgs~d------------g~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~d-g~I~ 989 (1179)
....+.....+...+..+... |.+..+|. .+..++.+..+-..-+.++||||++.+..+... +.|.
T Consensus 110 ~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~ 188 (307)
T COG3386 110 LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIH 188 (307)
T ss_pred cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEE
Confidence 122333444433334333322 33444443 455566655555566789999999888777654 7788
Q ss_pred EEeCCC--Cce-----eEEeecCCCCeEEEEEc--CCEEEEEeCCC-cEEEEEccCCeeeEEeecCCcCEEEEEEe-cCC
Q 001039 990 IWDIRA--GRQ-----MHKFLGHTKWIRSIRMD--RDTVITGSDDW-TARMWSISRGTCDAVLACHAGPVQCVEYS-SSD 1058 (1179)
Q Consensus 990 iwD~~~--~~~-----~~~~~~~~~~I~sl~~~--~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~h~~~V~~l~~s-pdg 1058 (1179)
-|++.. +.. ...+....+..-.++.+ +.+.+++..+| .|..|+.+ |+.+..+......+++++|- ++.
T Consensus 189 r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~ 267 (307)
T COG3386 189 RYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDL 267 (307)
T ss_pred EEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCc
Confidence 887752 211 11122233444455554 44444444444 89999987 99988888777888888884 344
Q ss_pred CEEEEEe
Q 001039 1059 RGIITGS 1065 (1179)
Q Consensus 1059 ~~l~sgs 1065 (1179)
+.|...+
T Consensus 268 ~~L~iTs 274 (307)
T COG3386 268 NTLYITS 274 (307)
T ss_pred CEEEEEe
Confidence 5444433
No 394
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.28 E-value=0.011 Score=42.53 Aligned_cols=39 Identities=31% Similarity=0.667 Sum_probs=34.4
Q ss_pred CeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 001039 1036 GTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE 1074 (1179)
Q Consensus 1036 ~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd 1074 (1179)
+++...+..|...|+++.|++++..+++++.||.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778899999999999999999999999999996
No 395
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=2.5 Score=45.93 Aligned_cols=259 Identities=10% Similarity=0.041 Sum_probs=151.1
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCC---eEEEEeecCCCcEE
Q 001039 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTS---QLLEELKGHDAQVS 927 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~---~~~~~~~~h~~~V~ 927 (1179)
+++...+..+.-++|.|++..........-.-.+-..++.-.|++...+..|.-..+.|+.+. +....+.......+
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~ 175 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTH 175 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCce
Confidence 667777777788999999855443332222222444577888999999986666778888654 44555555555556
Q ss_pred EEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEec--cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee--
Q 001039 928 CVRMLSGERVLTASHDGTVKMWDVRTDTCVATVG--RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFL-- 1003 (1179)
Q Consensus 928 ~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~-- 1003 (1179)
.++.+ |++-..+..|+-+.+-|+.+...-..+. .....+.++..+++-.+++..+ .-+.+-|..+.+....+-
T Consensus 176 ~v~IS-Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvlivd~s~~ssp~~~gsy 252 (370)
T COG5276 176 DVAIS-GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIVDVSGPSSPTVFGSY 252 (370)
T ss_pred eEEEe-cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEEEecCCCCCceEeecc
Confidence 66655 6677778889999999987654322221 2233678888877766665543 446777877665433331
Q ss_pred c--CCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeE---EeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 001039 1004 G--HTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDA---VLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDA 1078 (1179)
Q Consensus 1004 ~--~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~---~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~ 1078 (1179)
. ....++.+...+++......+.-+.+-|+.+..... .+......-..+..+ +.++..+..+ ...+-+....
T Consensus 253 et~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yiadkn-~g~vV~~s~~ 329 (370)
T COG5276 253 ETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIADKN-TGAVVDASPP 329 (370)
T ss_pred ccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEeccCC-ceEEEeCCCh
Confidence 1 122344567788888888778778888876543211 111111122233322 4455544444 3445555442
Q ss_pred CcceEEEeeccc--CceEEEEecCCCEEEEEECCCcEEEEeC
Q 001039 1079 GGIKCVKNVTIH--SSAILSINAGDHWLGIGAADNSMSLFHR 1118 (1179)
Q Consensus 1079 ~~~~~~~~~~~h--~~~i~sis~dg~~lasgs~Dg~I~iwd~ 1118 (1179)
. ......+. ...-.+++-+.+.+.+...++.+.+|+.
T Consensus 330 s---~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 330 S---MMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred h---hcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 1 11111111 1112334455568888888999999985
No 396
>PHA03098 kelch-like protein; Provisional
Probab=96.19 E-value=0.26 Score=61.05 Aligned_cols=185 Identities=7% Similarity=0.024 Sum_probs=92.0
Q ss_pred CCCEEEEEEcC------CeEEEEeCCCCeEEEEecc--CCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCcee
Q 001039 933 SGERVLTASHD------GTVKMWDVRTDTCVATVGR--CSSAVLCMEYDDSTGILAAGGRD-----AVANIWDIRAGRQM 999 (1179)
Q Consensus 933 ~~~~l~sgs~d------g~I~iwd~~~~~~~~~~~~--~~~~v~~l~~sp~~~~l~sgs~d-----g~I~iwD~~~~~~~ 999 (1179)
++..++.||.+ ..+..||..+++....-.- .......+ .-+++.++.||.+ ..+..||..+++-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 44455555543 2467788877765322111 11112222 2356777777765 35778888765432
Q ss_pred EE--eecCCCCeEEEEEcCCEEEEEeCC------CcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCC---
Q 001039 1000 HK--FLGHTKWIRSIRMDRDTVITGSDD------WTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDG--- 1068 (1179)
Q Consensus 1000 ~~--~~~~~~~I~sl~~~~~~l~sgs~d------g~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg--- 1068 (1179)
.. +............++...+.|+.+ ..+..||..+++-...-..........+...+++..+.|+.++
T Consensus 372 ~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 451 (534)
T PHA03098 372 EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDN 451 (534)
T ss_pred eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCC
Confidence 21 111222223344466666777632 3578899877654322110001111112233566667776432
Q ss_pred -----cEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECC-----CcEEEEeCCC
Q 001039 1069 -----LLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAAD-----NSMSLFHRPQ 1120 (1179)
Q Consensus 1069 -----~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~D-----g~I~iwd~~~ 1120 (1179)
.+.+||..+.. +..+...............+++.++.|+.+ +.+.+||..+
T Consensus 452 ~~~~~~v~~yd~~~~~-W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 452 IKVYNIVESYNPVTNK-WTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CcccceEEEecCCCCc-eeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 37888887632 333332221111112233477777777654 4678888763
No 397
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.058 Score=67.12 Aligned_cols=98 Identities=14% Similarity=0.341 Sum_probs=74.6
Q ss_pred CCEEEEEEcCCeEEEEeCCCCeE-EEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEE
Q 001039 934 GERVLTASHDGTVKMWDVRTDTC-VATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSI 1012 (1179)
Q Consensus 934 ~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl 1012 (1179)
+..++.|+..|.+-..|....-. ...-....++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+..+.+++
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 45688888889898888765311 12223456899999999999999999999999999999999999988877776665
Q ss_pred EE----cCC-EEEEEeCCCcEEEEEc
Q 001039 1013 RM----DRD-TVITGSDDWTARMWSI 1033 (1179)
Q Consensus 1013 ~~----~~~-~l~sgs~dg~I~iwd~ 1033 (1179)
-+ +++ .++++...|. +|.+
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEE
Confidence 44 333 5778777776 5554
No 398
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.11 E-value=0.34 Score=45.12 Aligned_cols=99 Identities=12% Similarity=0.109 Sum_probs=66.4
Q ss_pred EEEEEEcC---C-CCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEE-cCCEEEEEeCCCcEEEEEccCCeeeEE
Q 001039 967 VLCMEYDD---S-TGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRM-DRDTVITGSDDWTARMWSISRGTCDAV 1041 (1179)
Q Consensus 967 v~~l~~sp---~-~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~ 1041 (1179)
|+++++.. + .+.|++|+.|..|++|+- .+.+..+... ..|+++.. .+..++.+..+|+|-+|+- ...+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEcCCCEEEEEecCCEEEEEeC--cceeee
Confidence 55666554 2 257999999999999984 3566666444 45666655 6679999999999999985 233344
Q ss_pred eecCCcCEEEEEEec-CC---CEEEEEeCCCcEE
Q 001039 1042 LACHAGPVQCVEYSS-SD---RGIITGSSDGLLR 1071 (1179)
Q Consensus 1042 ~~~h~~~V~~l~~sp-dg---~~l~sgs~Dg~I~ 1071 (1179)
.+. ...++++++.. ++ .-|++|-.+|.|-
T Consensus 77 iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 442 33466665543 32 2588888888764
No 399
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.08 E-value=0.83 Score=58.02 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=72.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCc--------EEEEEEe-----------------CCCEEEEEEcCCeEE
Q 001039 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQ--------VSCVRML-----------------SGERVLTASHDGTVK 947 (1179)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~--------V~~l~~s-----------------~~~~l~sgs~dg~I~ 947 (1179)
+..++.++.++.|.-.|..+|+.+.++...... ...+.+. .+.+++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 556677777788888888888887776532211 1122222 234788999999999
Q ss_pred EEeCCCCeEEEEeccCCCcE-------------EEEEEcC--CCCEEEEEeC----------CCeEEEEeCCCCceeEEe
Q 001039 948 MWDVRTDTCVATVGRCSSAV-------------LCMEYDD--STGILAAGGR----------DAVANIWDIRAGRQMHKF 1002 (1179)
Q Consensus 948 iwd~~~~~~~~~~~~~~~~v-------------~~l~~sp--~~~~l~sgs~----------dg~I~iwD~~~~~~~~~~ 1002 (1179)
-.|.++|+.+..+.. ++.+ ..+.-.| .+..+++|+. +|.|+-+|.++|+.+-.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998877632 1111 0111222 2345666643 688999999999998776
Q ss_pred e
Q 001039 1003 L 1003 (1179)
Q Consensus 1003 ~ 1003 (1179)
.
T Consensus 353 ~ 353 (764)
T TIGR03074 353 D 353 (764)
T ss_pred e
Confidence 4
No 400
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.06 E-value=1.2 Score=50.41 Aligned_cols=127 Identities=9% Similarity=0.056 Sum_probs=84.5
Q ss_pred EEecCCCEEEEEeC-----------CCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEE-cCCeEEEEeCCC-
Q 001039 888 AINSDRGKVVSGSD-----------DQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTAS-HDGTVKMWDVRT- 953 (1179)
Q Consensus 888 ~~s~d~~~l~sgs~-----------dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs-~dg~I~iwd~~~- 953 (1179)
.+.++|.+-++... -|.++..|. .+..++.+..+-..-+.++|+ +++.++.+. ..+.|.-|++..
T Consensus 117 ~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~ 195 (307)
T COG3386 117 VVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPA 195 (307)
T ss_pred eEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcc
Confidence 35677776655433 133434443 566666666666667889999 565666554 458888887752
Q ss_pred -C----eE-EEEeccCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCceeEEeecCCCCeEEEEEcC
Q 001039 954 -D----TC-VATVGRCSSAVLCMEYDDSTGILAAGGRDA-VANIWDIRAGRQMHKFLGHTKWIRSIRMDR 1016 (1179)
Q Consensus 954 -~----~~-~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg-~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~ 1016 (1179)
+ +. ........+..-.++.+.+|++.+++..+| .|..|+.. |+.+..+..+...+++++|-+
T Consensus 196 ~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 196 TGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred cCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 1 11 112223445666788888999886665555 99999988 999999888878888999854
No 401
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.06 E-value=1.9 Score=47.07 Aligned_cols=194 Identities=12% Similarity=0.114 Sum_probs=100.9
Q ss_pred EEEecccCceEEEEeecccceeccccccCC-CCEEEEEeCCCcEEEEcCCCCCceeEEEe--ccccc-cEEEEecCCCEE
Q 001039 821 RIIRGHAGAITALHCVTKREVWDLVGDRED-AGFFISGSTDCLVKIWDPSLRGSELRATL--KGHTR-TVRAINSDRGKV 896 (1179)
Q Consensus 821 ~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d-~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l--~~h~~-~v~~~s~d~~~l 896 (1179)
+.+.+-...+.+++|. |+ +.++++....+.|.-.+.+ ++++..+ .+... .-.++.-++.++
T Consensus 15 ~~l~g~~~e~SGLTy~------------pd~~tLfaV~d~~~~i~els~~---G~vlr~i~l~g~~D~EgI~y~g~~~~v 79 (248)
T PF06977_consen 15 KPLPGILDELSGLTYN------------PDTGTLFAVQDEPGEIYELSLD---GKVLRRIPLDGFGDYEGITYLGNGRYV 79 (248)
T ss_dssp EE-TT--S-EEEEEEE------------TTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE-STTEEE
T ss_pred eECCCccCCccccEEc------------CCCCeEEEEECCCCEEEEEcCC---CCEEEEEeCCCCCCceeEEEECCCEEE
Confidence 4566667779999998 55 4466666777888777743 3344433 33211 111334555555
Q ss_pred EEEeCCCcEEEEECCCC------eEEEEee-----cCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCC---CeEEEEe-
Q 001039 897 VSGSDDQSVLVWDKQTS------QLLEELK-----GHDAQVSCVRML-SGERVLTASHDGTVKMWDVRT---DTCVATV- 960 (1179)
Q Consensus 897 ~sgs~dg~I~iwd~~t~------~~~~~~~-----~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~---~~~~~~~- 960 (1179)
++.-.++.+.+.++... .....+. .++..+-.++|. .++.++++-...-..+|.+.. .......
T Consensus 80 l~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 80 LSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp EEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred EEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence 55556899999888332 1112221 345668999998 467777777776666776653 2221111
Q ss_pred -------ccCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeEEeecCC---------CCeEEEEEcCC-EEEEE
Q 001039 961 -------GRCSSAVLCMEYDDS-TGILAAGGRDAVANIWDIRAGRQMHKFLGHT---------KWIRSIRMDRD-TVITG 1022 (1179)
Q Consensus 961 -------~~~~~~v~~l~~sp~-~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~---------~~I~sl~~~~~-~l~sg 1022 (1179)
......+.+++++|. +++++....+..|..+| .+|+.+..+.-.. ...-.++++++ .|...
T Consensus 160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv 238 (248)
T PF06977_consen 160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV 238 (248)
T ss_dssp -HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE
T ss_pred ccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE
Confidence 123446789999995 45566666788899999 6787776654322 24557777544 44444
Q ss_pred eCCCcEEE
Q 001039 1023 SDDWTARM 1030 (1179)
Q Consensus 1023 s~dg~I~i 1030 (1179)
++-+..++
T Consensus 239 sEpNlfy~ 246 (248)
T PF06977_consen 239 SEPNLFYR 246 (248)
T ss_dssp ETTTEEEE
T ss_pred cCCceEEE
Confidence 45444433
No 402
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.93 E-value=1.6 Score=55.42 Aligned_cols=109 Identities=16% Similarity=0.123 Sum_probs=73.2
Q ss_pred CCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCc--------EEEEEEc----------------CCCCEEEEEeCCCeEE
Q 001039 934 GERVLTASHDGTVKMWDVRTDTCVATVGRCSSA--------VLCMEYD----------------DSTGILAAGGRDAVAN 989 (1179)
Q Consensus 934 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~--------v~~l~~s----------------p~~~~l~sgs~dg~I~ 989 (1179)
++.++.++.++.|.-.|..+|+.+..+...... ...+++. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 566777777888888888888887776432110 1122221 1344788888999999
Q ss_pred EEeCCCCceeEEeecCCCCe----------------EE-EEEcCCEEEEEeC----------CCcEEEEEccCCeeeEEe
Q 001039 990 IWDIRAGRQMHKFLGHTKWI----------------RS-IRMDRDTVITGSD----------DWTARMWSISRGTCDAVL 1042 (1179)
Q Consensus 990 iwD~~~~~~~~~~~~~~~~I----------------~s-l~~~~~~l~sgs~----------dg~I~iwd~~~~~~~~~~ 1042 (1179)
-.|.++|+.+..+.. .+.+ ++ -.+.++.+++|+. +|.|+-+|.++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999876632 1111 11 1223556777753 688999999999998887
Q ss_pred e
Q 001039 1043 A 1043 (1179)
Q Consensus 1043 ~ 1043 (1179)
.
T Consensus 353 ~ 353 (764)
T TIGR03074 353 D 353 (764)
T ss_pred e
Confidence 5
No 403
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=0.06 Score=66.99 Aligned_cols=98 Identities=22% Similarity=0.352 Sum_probs=71.7
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEE--EEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEE
Q 001039 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSC 928 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~ 928 (1179)
+..++.|++.|.|-..|+..+ -.....-..-.++|+ +++.+|..++.|-.+|.|.+||+..++.++.+..|..+.++
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 667889999999998886521 111122222345566 56899999999999999999999999999999888877776
Q ss_pred EEEe----CCCEEEEEEcCCeEEEEeC
Q 001039 929 VRML----SGERVLTASHDGTVKMWDV 951 (1179)
Q Consensus 929 l~~s----~~~~l~sgs~dg~I~iwd~ 951 (1179)
+-+. .+..++++...|. +|..
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 6554 4556778777775 5553
No 404
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.86 E-value=0.55 Score=51.02 Aligned_cols=189 Identities=13% Similarity=0.102 Sum_probs=113.2
Q ss_pred cccccCCcc-eEEE-EEccCCCceeeccCc----eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEe
Q 001039 762 AEASGIGRS-WVQS-MFSREASSRSHSFSR----VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHC 835 (1179)
Q Consensus 762 ~~~~gh~~~-i~~~-~fSpdg~~las~~~d----I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~ 835 (1179)
+....|... .++- .|..||.++-|++.- |+.+|.++++.......+..-. . .=+.-+.+.++.+.|
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F-----g---EGit~~~d~l~qLTW 107 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF-----G---EGITILGDKLYQLTW 107 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-------E---EEEEEETTEEEEEES
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc-----c---eeEEEECCEEEEEEe
Confidence 334455443 3443 787888877777655 9999999887211000000000 0 001112333444443
Q ss_pred ecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeE
Q 001039 836 VTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQL 915 (1179)
Q Consensus 836 s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~ 915 (1179)
.++...+||.+ ..+.+..+.- .+.=+.++.|++.|+.+.....+..+|..+.+.
T Consensus 108 -----------------------k~~~~f~yd~~--tl~~~~~~~y-~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 108 -----------------------KEGTGFVYDPN--TLKKIGTFPY-PGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKE 161 (264)
T ss_dssp -----------------------SSSEEEEEETT--TTEEEEEEE--SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SE
T ss_pred -----------------------cCCeEEEEccc--cceEEEEEec-CCcceEEEcCCCEEEEECCccceEEECCcccce
Confidence 37888999965 4455555432 234456778899999888888999999998887
Q ss_pred EEEeecCC-----CcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEecc---------------CCCcEEEEEEcCC
Q 001039 916 LEELKGHD-----AQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGR---------------CSSAVLCMEYDDS 975 (1179)
Q Consensus 916 ~~~~~~h~-----~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---------------~~~~v~~l~~sp~ 975 (1179)
.+++.... ..++-+.|.+|...+=.-....|...|..+|++...+.- ..+-.+.+|++|.
T Consensus 162 ~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~ 241 (264)
T PF05096_consen 162 VRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPE 241 (264)
T ss_dssp EEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETT
T ss_pred EEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCC
Confidence 77665322 245667777887777777788899999999998876621 1345789999998
Q ss_pred CCEEEEEeC
Q 001039 976 TGILAAGGR 984 (1179)
Q Consensus 976 ~~~l~sgs~ 984 (1179)
++.+...+.
T Consensus 242 ~~~l~vTGK 250 (264)
T PF05096_consen 242 TDRLFVTGK 250 (264)
T ss_dssp TTEEEEEET
T ss_pred CCEEEEEeC
Confidence 777666653
No 405
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.82 E-value=0.45 Score=56.35 Aligned_cols=181 Identities=16% Similarity=0.151 Sum_probs=100.1
Q ss_pred cceEEEEEccCCCceeec-----c-CceEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeeccccee
Q 001039 769 RSWVQSMFSREASSRSHS-----F-SRVRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVW 842 (1179)
Q Consensus 769 ~~i~~~~fSpdg~~las~-----~-~dI~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~ 842 (1179)
..+..-+|+|||+.++.. . .++.+++++++... .+..+.++.. .-+|
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-----------------~i~~~~g~~~---~P~f------- 245 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-----------------VILNFNGNNG---APAF------- 245 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-----------------eeeccCCccC---CccC-------
Confidence 445555999999875543 2 23888999887621 2223344432 2334
Q ss_pred ccccccCCCCEEEEE-eCCCcEEEEcCCCCCceeEEEeccccc--cEEEEecCCCEEEEEeC-CC--cEEEEECCCCeEE
Q 001039 843 DLVGDREDAGFFISG-STDCLVKIWDPSLRGSELRATLKGHTR--TVRAINSDRGKVVSGSD-DQ--SVLVWDKQTSQLL 916 (1179)
Q Consensus 843 ~~~~~s~d~~~Lasg-s~Dg~I~lWd~~~~~~~~~~~l~~h~~--~v~~~s~d~~~l~sgs~-dg--~I~iwd~~t~~~~ 916 (1179)
+|||+.|+-+ ..||...||-.+..+....+ +....+ .-.+++|||++++-.+. .| .|.+.|.+.+..
T Consensus 246 -----spDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~- 318 (425)
T COG0823 246 -----SPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV- 318 (425)
T ss_pred -----CCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-
Confidence 4899888755 45776555543333333222 221111 12368999999887654 34 466667766655
Q ss_pred EEeecCCCcEEEEEEe-CCCEEEEEEc-CCe--EEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeC
Q 001039 917 EELKGHDAQVSCVRML-SGERVLTASH-DGT--VKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGR 984 (1179)
Q Consensus 917 ~~~~~h~~~V~~l~~s-~~~~l~sgs~-dg~--I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~ 984 (1179)
..+......-..-.|+ +|++++..+. +|. |.+.|+.++...+.+ ........-.+.++++.+...+.
T Consensus 319 ~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 319 TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEecc
Confidence 3332222222255667 6888776664 344 666777666543333 22333345567777776665443
No 406
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.1 Score=60.28 Aligned_cols=138 Identities=9% Similarity=0.095 Sum_probs=95.7
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCC-------EEEEEeCCCeEEEEeCCCC-c-eeEEeecCC-
Q 001039 937 VLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTG-------ILAAGGRDAVANIWDIRAG-R-QMHKFLGHT- 1006 (1179)
Q Consensus 937 l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~-------~l~sgs~dg~I~iwD~~~~-~-~~~~~~~~~- 1006 (1179)
+.++.....++-.|++.|+.+...+.+.. |.-+.+.|+.+ .-+.|-.|..|.-||.|-. + .+...++|+
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 33555567788889999999988876655 77777777553 1245667889999998842 2 222222332
Q ss_pred ---CCeEEEEEcC-CEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcC
Q 001039 1007 ---KWIRSIRMDR-DTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEND 1076 (1179)
Q Consensus 1007 ---~~I~sl~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~ 1076 (1179)
....|++-.+ .++++||.+|.||+||--.......+.+-..+|..+..+.||++|++.+ +..+.+.++.
T Consensus 428 ~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 428 STKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 2445665544 4999999999999999633334455778889999999999999987664 4455555543
No 407
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.77 E-value=0.012 Score=61.14 Aligned_cols=138 Identities=16% Similarity=0.142 Sum_probs=86.9
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEEe-ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-ceeEEeecCCCCeEEEEE
Q 001039 937 VLTASHDGTVKMWDVRTDTCVATV-GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAG-RQMHKFLGHTKWIRSIRM 1014 (1179)
Q Consensus 937 l~sgs~dg~I~iwd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~-~~~~~~~~~~~~I~sl~~ 1014 (1179)
+..-+.||.|.-++++..+....- .-+... ...-.-+..+++|+.+|.|.+|...-- ........-...|.++-.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 455677888888877654321111 111111 122223556899999999999987621 111111222233434333
Q ss_pred ---cCCEEEEEeCCCcEEEEEccCCeeeEEeecCC-cCEEEEEEecCCCEEEEE--eCCCcEEEEEcCC
Q 001039 1015 ---DRDTVITGSDDWTARMWSISRGTCDAVLACHA-GPVQCVEYSSSDRGIITG--SSDGLLRFWENDD 1077 (1179)
Q Consensus 1015 ---~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~-~~V~~l~~spdg~~l~sg--s~Dg~I~iwd~~~ 1077 (1179)
++.+..+++.||.||.|++.-++.+.....|. .++.....+..++.++.+ |.|..++.|++..
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 33488899999999999999888887777777 566666666667777776 7777777777765
No 408
>PHA03098 kelch-like protein; Provisional
Probab=95.63 E-value=0.24 Score=61.30 Aligned_cols=188 Identities=12% Similarity=0.055 Sum_probs=95.0
Q ss_pred CCCEEEEEeCCC------cEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCC-----CcEEEEECCCCeEEEE
Q 001039 850 DAGFFISGSTDC------LVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDD-----QSVLVWDKQTSQLLEE 918 (1179)
Q Consensus 850 d~~~Lasgs~Dg------~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~d-----g~I~iwd~~t~~~~~~ 918 (1179)
++..++.||.++ .+..||...........+........+...++...+.||.+ ..+..||..+++-...
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 466677776543 46778866433322222221222222344577777788765 3577788877654321
Q ss_pred eec-CCCcEEEEEEeCCCEEEEEEcC------CeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC------
Q 001039 919 LKG-HDAQVSCVRMLSGERVLTASHD------GTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD------ 985 (1179)
Q Consensus 919 ~~~-h~~~V~~l~~s~~~~l~sgs~d------g~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~d------ 985 (1179)
-.- +...-.+++..++..++.||.+ +.+..||..+++....-..........+...++...+.||.+
T Consensus 374 ~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 453 (534)
T PHA03098 374 PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIK 453 (534)
T ss_pred CCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCc
Confidence 111 1111122333466677777632 458899988776433211111111111222356666676643
Q ss_pred --CeEEEEeCCCCceeEE--eecCCCCeEEEEEcCCEEEEEeCC-----CcEEEEEccCCe
Q 001039 986 --AVANIWDIRAGRQMHK--FLGHTKWIRSIRMDRDTVITGSDD-----WTARMWSISRGT 1037 (1179)
Q Consensus 986 --g~I~iwD~~~~~~~~~--~~~~~~~I~sl~~~~~~l~sgs~d-----g~I~iwd~~~~~ 1037 (1179)
..+.+||..+++-... +.........+..++..++.|+.+ +.+.+||..+.+
T Consensus 454 ~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 454 VYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 2388899887653322 111122223344466666677654 357777776554
No 409
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.63 E-value=0.022 Score=59.13 Aligned_cols=139 Identities=13% Similarity=0.180 Sum_probs=82.4
Q ss_pred EEEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeE-EEEeecCCCcEEEEEEe
Q 001039 854 FISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQL-LEELKGHDAQVSCVRML 932 (1179)
Q Consensus 854 Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~-~~~~~~h~~~V~~l~~s 932 (1179)
+...+.||.|+-+++......+ +.-.-|... ..+..-+..+++|+.+|.|.+|+...... ...+......|.++.-.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~-rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESC-RSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred hccccCCcccccchhhhhhhhh-hhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 4455668888888765211111 111222222 34556678899999999999999863211 11122223334443333
Q ss_pred --CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCC-CcEEEEEEcCCCCEEEEE--eCCCeEEEEeCC
Q 001039 933 --SGERVLTASHDGTVKMWDVRTDTCVATVGRCS-SAVLCMEYDDSTGILAAG--GRDAVANIWDIR 994 (1179)
Q Consensus 933 --~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~-~~v~~l~~sp~~~~l~sg--s~dg~I~iwD~~ 994 (1179)
++.+..+++.||.|+.|++.-++.+.....|. ..+.....+..+..++.+ +.|..++.|++.
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 45588899999999999999888887776666 444444444444445444 455555555544
No 410
>PHA02790 Kelch-like protein; Provisional
Probab=95.56 E-value=0.32 Score=59.12 Aligned_cols=184 Identities=9% Similarity=-0.052 Sum_probs=94.8
Q ss_pred CCCEEEEEeCCC-----cEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCC--CcEEEEECCCCeEEEEeecC
Q 001039 850 DAGFFISGSTDC-----LVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDD--QSVLVWDKQTSQLLEELKGH 922 (1179)
Q Consensus 850 d~~~Lasgs~Dg-----~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~d--g~I~iwd~~t~~~~~~~~~h 922 (1179)
++.+++.||.++ ++..||...+.......+............++...+.||.+ .++..||..+++-...-.-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 356667777543 46678866433333222222222222345677777777754 45788887766443211111
Q ss_pred C-CcEEEEEEeCCCEEEEEEcCC---eEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 001039 923 D-AQVSCVRMLSGERVLTASHDG---TVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ 998 (1179)
Q Consensus 923 ~-~~V~~l~~s~~~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~ 998 (1179)
. ..-.+++..++...+.||.++ .+..||.++++....-.-........+..-+++..+.| |.+.+||.++++-
T Consensus 351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W 427 (480)
T PHA02790 351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTW 427 (480)
T ss_pred CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCCcE
Confidence 1 111233344777778877653 47789988776443211111111111223356666666 3577899877644
Q ss_pred eE--EeecCCCCeEEEEEcCCEEEEEeCC-----CcEEEEEccCC
Q 001039 999 MH--KFLGHTKWIRSIRMDRDTVITGSDD-----WTARMWSISRG 1036 (1179)
Q Consensus 999 ~~--~~~~~~~~I~sl~~~~~~l~sgs~d-----g~I~iwd~~~~ 1036 (1179)
.. .+.........+..++...+.|+.+ .++..||..++
T Consensus 428 ~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 428 TLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred eEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 32 2222233444555677777777754 23555665544
No 411
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.54 E-value=2 Score=46.45 Aligned_cols=219 Identities=15% Similarity=0.184 Sum_probs=123.1
Q ss_pred CCEEEEEeCCCc-EEEEcCCCCCceeEEEeccccc----cEEEEecCCCEEEEEeCC-----CcEEEEECCCC-eEEEEe
Q 001039 851 AGFFISGSTDCL-VKIWDPSLRGSELRATLKGHTR----TVRAINSDRGKVVSGSDD-----QSVLVWDKQTS-QLLEEL 919 (1179)
Q Consensus 851 ~~~Lasgs~Dg~-I~lWd~~~~~~~~~~~l~~h~~----~v~~~s~d~~~l~sgs~d-----g~I~iwd~~t~-~~~~~~ 919 (1179)
..-++.+-.-|+ ..++|.+. ..++ .++...++ .--.+|+||.+|++.-.| |.|-|||...+ +.+..+
T Consensus 80 ~ravafARrPGtf~~vfD~~~-~~~p-v~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~ 157 (366)
T COG3490 80 PRAVAFARRPGTFAMVFDPNG-AQEP-VTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEF 157 (366)
T ss_pred cceEEEEecCCceEEEECCCC-CcCc-EEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceeccc
Confidence 444555555555 36778652 2222 22222222 222589999999987543 78999998754 456678
Q ss_pred ecCCCcEEEEEEe-CCCEEEEEEcC------------------CeEEEEeCCCCeEEEEec----cCCCcEEEEEEcCCC
Q 001039 920 KGHDAQVSCVRML-SGERVLTASHD------------------GTVKMWDVRTDTCVATVG----RCSSAVLCMEYDDST 976 (1179)
Q Consensus 920 ~~h~~~V~~l~~s-~~~~l~sgs~d------------------g~I~iwd~~~~~~~~~~~----~~~~~v~~l~~sp~~ 976 (1179)
..|.-.-..+.+. ||..++.+... -.+.+.|..+|..+.+.. .+.-.|..++..+||
T Consensus 158 ~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg 237 (366)
T COG3490 158 STHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG 237 (366)
T ss_pred ccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCC
Confidence 8888777888888 67766655320 123344545555443321 234568888888888
Q ss_pred CEEEEEeCCCe-----EEEEeCCCCceeEEeec-------CCCCeEEEEEc--CCEEEEEe-CCCcEEEEEccCCeeeEE
Q 001039 977 GILAAGGRDAV-----ANIWDIRAGRQMHKFLG-------HTKWIRSIRMD--RDTVITGS-DDWTARMWSISRGTCDAV 1041 (1179)
Q Consensus 977 ~~l~sgs~dg~-----I~iwD~~~~~~~~~~~~-------~~~~I~sl~~~--~~~l~sgs-~dg~I~iwd~~~~~~~~~ 1041 (1179)
..++.+-..|. -.+=-.+.++.+.-+.. -...|-+++.+ ...++..+ ..+...+||..+|..+..
T Consensus 238 tvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 238 TVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred cEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 76655432221 11111223333333321 12356677775 33444444 455678999999987655
Q ss_pred eecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEc
Q 001039 1042 LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWEN 1075 (1179)
Q Consensus 1042 ~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~ 1075 (1179)
..-- ....+ -+...-++..+.+|.+.++.-
T Consensus 318 a~l~--daaGv--a~~~~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 318 AALP--DAAGV--AAAKGGFAVSSGQGRIIFYSR 347 (366)
T ss_pred cccc--ccccc--eeccCceEEecCCceEEeccc
Confidence 3311 11122 233444666777888887743
No 412
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.047 Score=64.27 Aligned_cols=72 Identities=13% Similarity=0.177 Sum_probs=63.3
Q ss_pred CCeEEEEEcCC--EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEE-EEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 001039 1007 KWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDAVLACHAGPVQ-CVEYSSSDRGIITGSSDGLLRFWENDDAG 1079 (1179)
Q Consensus 1007 ~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~-~l~~spdg~~l~sgs~Dg~I~iwd~~~~~ 1079 (1179)
..+.-+.|+|. .+|.+..+|.|.+..++ .+.+.++..+...++ +++|.|||+.||.|-.||+|++.|+.++.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 35667788875 89999999999999988 778888887777777 99999999999999999999999999854
No 413
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.076 Score=62.60 Aligned_cols=92 Identities=15% Similarity=0.184 Sum_probs=74.3
Q ss_pred CcEEEEEEeC-CCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 001039 924 AQVSCVRMLS-GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVL-CMEYDDSTGILAAGGRDAVANIWDIRAGRQMHK 1001 (1179)
Q Consensus 924 ~~V~~l~~s~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~-~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~ 1001 (1179)
..+.-+.|++ -+.+|++..+|.|.+..++ .+.+.++..++..++ +++|.|||+.+++|-.||+|++.|+.++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 4567788885 6789999999999999887 777888876777777 999999999999999999999999999887766
Q ss_pred e-ecCCCCeEEEEEcC
Q 001039 1002 F-LGHTKWIRSIRMDR 1016 (1179)
Q Consensus 1002 ~-~~~~~~I~sl~~~~ 1016 (1179)
. ......|.++.|++
T Consensus 100 ~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDR 115 (665)
T ss_pred cccccccchheeeccc
Confidence 3 23344566666653
No 414
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.20 E-value=1.2 Score=55.22 Aligned_cols=182 Identities=10% Similarity=0.055 Sum_probs=97.1
Q ss_pred CcEEEEEEe-CCCEEEEEE------cCC--eEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC---------
Q 001039 924 AQVSCVRML-SGERVLTAS------HDG--TVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD--------- 985 (1179)
Q Consensus 924 ~~V~~l~~s-~~~~l~sgs------~dg--~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~d--------- 985 (1179)
..+...+.+ +++.++... .|+ .+.+++.. +.. ..+.. ......-.|+|+|+.+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 456777777 666665444 233 45555542 222 22222 2237788999998877776532
Q ss_pred ---CeEEEEeCCCCceeEEeecCCCCeEEEEEcCC--EEEEEeCCCcEEE---EEccCCee-e---EEee-cCCcCEEEE
Q 001039 986 ---AVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARM---WSISRGTC-D---AVLA-CHAGPVQCV 1052 (1179)
Q Consensus 986 ---g~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~--~l~sgs~dg~I~i---wd~~~~~~-~---~~~~-~h~~~V~~l 1052 (1179)
+.+.+.++..++... ...+.|.++.|+++ .++... +|.|.+ -....|.. + ..+. .-...+.++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 233333443333222 23457999999654 555544 477777 44344541 1 1122 223346889
Q ss_pred EEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcE
Q 001039 1053 EYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSM 1113 (1179)
Q Consensus 1053 ~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I 1113 (1179)
.|..++..+ ++..++...+|.+.-.+.......-......+.+++.....++.++.+|.+
T Consensus 503 ~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~ 562 (591)
T PRK13616 503 DWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDARAVL 562 (591)
T ss_pred eEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceEEEEcCCceE
Confidence 999999855 555555555666554332222211111245566665444556666666644
No 415
>PHA02790 Kelch-like protein; Provisional
Probab=95.19 E-value=0.54 Score=57.21 Aligned_cols=171 Identities=8% Similarity=0.043 Sum_probs=87.8
Q ss_pred eEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCceeE--EeecCCCCeEEEEEcCCEEE
Q 001039 945 TVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRD--AVANIWDIRAGRQMH--KFLGHTKWIRSIRMDRDTVI 1020 (1179)
Q Consensus 945 ~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~d--g~I~iwD~~~~~~~~--~~~~~~~~I~sl~~~~~~l~ 1020 (1179)
++..||..+++....-.-...........-++...++||.+ ..+..||..+++-.. .+............++...+
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYv 367 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYV 367 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEE
Confidence 46678877765433221111111111122367777777753 357888876654322 22222223344555777777
Q ss_pred EEeCCC---cEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE
Q 001039 1021 TGSDDW---TARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI 1097 (1179)
Q Consensus 1021 sgs~dg---~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si 1097 (1179)
.|+.++ .+..||.++.+-...-.-....-...+..-+|+..+.|+ .+.+||.+++ .+..+.............
T Consensus 368 iGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~-~W~~~~~m~~~r~~~~~~ 443 (480)
T PHA02790 368 IGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYCESSN-TWTLIDDPIYPRDNPELI 443 (480)
T ss_pred ecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---ceEEecCCCC-cEeEcCCCCCCccccEEE
Confidence 777654 467888776644322111111111122234566666663 4678888763 355444443323333334
Q ss_pred ecCCCEEEEEECC-----CcEEEEeCC
Q 001039 1098 NAGDHWLGIGAAD-----NSMSLFHRP 1119 (1179)
Q Consensus 1098 s~dg~~lasgs~D-----g~I~iwd~~ 1119 (1179)
..+|+..+.||.+ .++..||..
T Consensus 444 v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 444 IVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred EECCEEEEECCcCCCcccceEEEEECC
Confidence 5677888888754 346677765
No 416
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.15 E-value=1.9 Score=45.16 Aligned_cols=128 Identities=13% Similarity=0.049 Sum_probs=80.4
Q ss_pred EEecCCCEEEEEeCC---------CcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCC-EEEEEEcCCeEEEEe--CCCC
Q 001039 888 AINSDRGKVVSGSDD---------QSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGE-RVLTASHDGTVKMWD--VRTD 954 (1179)
Q Consensus 888 ~~s~d~~~l~sgs~d---------g~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~-~l~sgs~dg~I~iwd--~~~~ 954 (1179)
.++|+|++.+-.-.| |.++.|-.. ..+..+...-..-+.++|. +.. ..++-+.+-+|.-|| ..+|
T Consensus 115 kvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG 192 (310)
T KOG4499|consen 115 KVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTG 192 (310)
T ss_pred ccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcc
Confidence 368999984322222 334444322 1122222222333567777 333 455667778887788 5555
Q ss_pred e-----EEEEecc----CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC
Q 001039 955 T-----CVATVGR----CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD 1017 (1179)
Q Consensus 955 ~-----~~~~~~~----~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~ 1017 (1179)
. .+..++. ..-..-.++.+.+|++.+++-..|+|...|..+|+.+.++.-....|+|++|.+.
T Consensus 193 ~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 193 DLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred cccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 3 2323322 1112234566778998888888999999999999999999999999999999654
No 417
>PRK10115 protease 2; Provisional
Probab=95.12 E-value=14 Score=47.05 Aligned_cols=233 Identities=9% Similarity=-0.008 Sum_probs=113.9
Q ss_pred cceEEEEEccCCCceeeccCc-------eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccce
Q 001039 769 RSWVQSMFSREASSRSHSFSR-------VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREV 841 (1179)
Q Consensus 769 ~~i~~~~fSpdg~~las~~~d-------I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~ 841 (1179)
-.+....+||||+++|.+.+. +++-|+.++... ...+.+- -..++|+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l------------------~~~i~~~---~~~~~w~----- 180 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY------------------PELLDNV---EPSFVWA----- 180 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC------------------CccccCc---ceEEEEe-----
Confidence 345556899999998876443 888888766521 0111111 1447776
Q ss_pred eccccccCCCCEEEEEeCC------CcEEEEcCCCCCceeEEEeccccc--cEEEE-ecCCCEEEEEeC---CCcEEEEE
Q 001039 842 WDLVGDREDAGFFISGSTD------CLVKIWDPSLRGSELRATLKGHTR--TVRAI-NSDRGKVVSGSD---DQSVLVWD 909 (1179)
Q Consensus 842 ~~~~~~s~d~~~Lasgs~D------g~I~lWd~~~~~~~~~~~l~~h~~--~v~~~-s~d~~~l~sgs~---dg~I~iwd 909 (1179)
+|++.|+-+..+ ..|+.|++.+...+-...+.+... .+... +.++++++..+. ++.+.+|+
T Consensus 181 -------~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~ 253 (686)
T PRK10115 181 -------NDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLD 253 (686)
T ss_pred -------eCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEE
Confidence 677755544332 367778876442232233333222 22233 447887665443 45788888
Q ss_pred CC--CCeEEEEeecCCCcEEEEEEeCCCEEEEEEcC----CeEEEEeCC-CCeEEEEeccC-CCcEEEEEEcCCCCEEEE
Q 001039 910 KQ--TSQLLEELKGHDAQVSCVRMLSGERVLTASHD----GTVKMWDVR-TDTCVATVGRC-SSAVLCMEYDDSTGILAA 981 (1179)
Q Consensus 910 ~~--t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~d----g~I~iwd~~-~~~~~~~~~~~-~~~v~~l~~sp~~~~l~s 981 (1179)
.. +++....+....+....+. +.++.+..-+.. ..|...++. .++....+... ...+..+.+. .+.++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~ 331 (686)
T PRK10115 254 AELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVE 331 (686)
T ss_pred CcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEE
Confidence 42 3432222222222233332 333444433332 234444554 23222223232 3467778877 3345556
Q ss_pred EeCCCeEEE--EeCCCCceeEEee-cCCCCeEEEEEc----CC-EEEEEe---CCCcEEEEEccCCe
Q 001039 982 GGRDAVANI--WDIRAGRQMHKFL-GHTKWIRSIRMD----RD-TVITGS---DDWTARMWSISRGT 1037 (1179)
Q Consensus 982 gs~dg~I~i--wD~~~~~~~~~~~-~~~~~I~sl~~~----~~-~l~sgs---~dg~I~iwd~~~~~ 1037 (1179)
...+|.-++ +|..++ .+..+. .....+..+..+ .+ .+++.+ .-+.+..+|..+++
T Consensus 332 ~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 332 ERQRGLTSLRQINRKTR-EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEeCCEEEEEEEcCCCC-ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 666665444 454333 334333 222223222222 22 333333 34678888887764
No 418
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.91 E-value=1.2 Score=55.01 Aligned_cols=182 Identities=14% Similarity=0.153 Sum_probs=100.4
Q ss_pred ceEEEEeecccceeccccccCCCCEEEEEe------CCC--cEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEe
Q 001039 829 AITALHCVTKREVWDLVGDREDAGFFISGS------TDC--LVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGS 900 (1179)
Q Consensus 829 ~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs------~Dg--~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs 900 (1179)
.+.+.+.+ +||+.+|... .|+ .|.+++.. +. ......+....--.|+++|+.+++..
T Consensus 351 ~vsspaiS------------pdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~-~~~lt~g~~~t~PsWspDG~~lw~v~ 415 (591)
T PRK13616 351 NITSAALS------------RSGRQVAAVVTLGRGAPDPASSLWVGPLG--GV-AVQVLEGHSLTRPSWSLDADAVWVVV 415 (591)
T ss_pred CcccceEC------------CCCCEEEEEEeecCCCCCcceEEEEEeCC--Cc-ceeeecCCCCCCceECCCCCceEEEe
Confidence 45666666 8888887655 244 44444532 22 22333444333347899988877765
Q ss_pred CC------------CcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEE---EeCCCCeE-E---EEe
Q 001039 901 DD------------QSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKM---WDVRTDTC-V---ATV 960 (1179)
Q Consensus 901 ~d------------g~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~i---wd~~~~~~-~---~~~ 960 (1179)
.. +.+.+.+++.++... .....|..+.|+ +|.+++... +|.|.+ -....|.. + ..+
T Consensus 416 dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l 491 (591)
T PRK13616 416 DGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREV 491 (591)
T ss_pred cCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEe
Confidence 32 233333444443322 234579999999 788877655 477776 44444541 1 112
Q ss_pred c-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CceeEEeec--CCCCeEEEEEcCCEEEEEeCCCcEEE
Q 001039 961 G-RCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRA-GRQMHKFLG--HTKWIRSIRMDRDTVITGSDDWTARM 1030 (1179)
Q Consensus 961 ~-~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~-~~~~~~~~~--~~~~I~sl~~~~~~l~sgs~dg~I~i 1030 (1179)
. .....+.++.|..++.++ ++..++.-.+|.+.- |.....+.+ ....+.+++-+++.++....+|.+.+
T Consensus 492 ~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~~l 564 (591)
T PRK13616 492 GPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDARAVLQL 564 (591)
T ss_pred ecccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceEEEEcCCceEEe
Confidence 2 233346889999999855 555555444554332 222222222 24566677766666666666664443
No 419
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.91 E-value=11 Score=44.51 Aligned_cols=88 Identities=11% Similarity=0.206 Sum_probs=55.4
Q ss_pred EEEEecCCCEEEEEeCCCcEEE---EECC-----CCeEEEEeec---C--CCcEEEEEEe------------CCCEEEEE
Q 001039 886 VRAINSDRGKVVSGSDDQSVLV---WDKQ-----TSQLLEELKG---H--DAQVSCVRML------------SGERVLTA 940 (1179)
Q Consensus 886 v~~~s~d~~~l~sgs~dg~I~i---wd~~-----t~~~~~~~~~---h--~~~V~~l~~s------------~~~~l~sg 940 (1179)
..+++++++.++.+..+.-+.+ |+.. .++......+ + ...|+++.+. +...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4467899999999987776665 5431 1222222211 1 1567776653 13468899
Q ss_pred EcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcC
Q 001039 941 SHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDD 974 (1179)
Q Consensus 941 s~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp 974 (1179)
..+|.|++|.- +|..+..-.-|..+|..+.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999985 6665544445677777766643
No 420
>PRK13684 Ycf48-like protein; Provisional
Probab=94.74 E-value=10 Score=43.64 Aligned_cols=151 Identities=7% Similarity=-0.083 Sum_probs=78.4
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEE-eCCCCceeEE-eecCCCCeEEEEEcC-CEEEEEeCCCcEEEEEccCCeeeE
Q 001039 964 SSAVLCMEYDDSTGILAAGGRDAVANIW-DIRAGRQMHK-FLGHTKWIRSIRMDR-DTVITGSDDWTARMWSISRGTCDA 1040 (1179)
Q Consensus 964 ~~~v~~l~~sp~~~~l~sgs~dg~I~iw-D~~~~~~~~~-~~~~~~~I~sl~~~~-~~l~sgs~dg~I~iwd~~~~~~~~ 1040 (1179)
...+..+.+.+++.+++++ ..|.+..- | ..++.-.. .......++++.+.+ +.++..+..|.+++=+.+.|..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccc
Confidence 4578899999988766555 45655432 2 12222222 223445778887743 334444567776543344444322
Q ss_pred Eeec----CCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE-ecCCCEEEEEECCCcEEE
Q 001039 1041 VLAC----HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI-NAGDHWLGIGAADNSMSL 1115 (1179)
Q Consensus 1041 ~~~~----h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si-s~dg~~lasgs~Dg~I~i 1115 (1179)
.... ....+.++.+.+++..+++| .+|.+. ...+.+...+.......-......+ -.++......+..|.|-.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~ 327 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLR 327 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEE
Confidence 2221 12357889999987765544 677554 4444444344332111222233333 223333344556788877
Q ss_pred EeC
Q 001039 1116 FHR 1118 (1179)
Q Consensus 1116 wd~ 1118 (1179)
|+-
T Consensus 328 ~~~ 330 (334)
T PRK13684 328 YVG 330 (334)
T ss_pred ecC
Confidence 763
No 421
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.69 E-value=4.1 Score=44.55 Aligned_cols=161 Identities=12% Similarity=0.095 Sum_probs=102.1
Q ss_pred ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC-CCCeEEEEEc-CC-EEEEEeCCCcEEEEEccCCe
Q 001039 961 GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH-TKWIRSIRMD-RD-TVITGSDDWTARMWSISRGT 1037 (1179)
Q Consensus 961 ~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~-~~~I~sl~~~-~~-~l~sgs~dg~I~iwd~~~~~ 1037 (1179)
.+....+.++.|+|+.+.|++......-.+|=..+|+.+.++.-. -...-.+.+- ++ ++++--.++.+.++.+..+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 345566999999999999999888887778777789888876422 1223345552 33 45555567778777765543
Q ss_pred eeEE-------e---ecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCce----EEEEe-----
Q 001039 1038 CDAV-------L---ACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSA----ILSIN----- 1098 (1179)
Q Consensus 1038 ~~~~-------~---~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~----i~sis----- 1098 (1179)
.... + ...+...-.++|+|.++.+..+-+..-+.|+.+......-.......++.. +..+|
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 2211 1 112556789999999999999988887888876643211111111122211 22221
Q ss_pred -cCCCEEEEEECCCcEEEEeCCCC
Q 001039 1099 -AGDHWLGIGAADNSMSLFHRPQE 1121 (1179)
Q Consensus 1099 -~dg~~lasgs~Dg~I~iwd~~~~ 1121 (1179)
..+.+++-+.+++.+.-.|....
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred CCCCcEEEEecCCceEEEEecCCC
Confidence 35777888888888887777643
No 422
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.66 E-value=9.6 Score=42.91 Aligned_cols=175 Identities=13% Similarity=0.127 Sum_probs=83.2
Q ss_pred EEEEEeCCCcEEEEECCCCeE-EEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEE
Q 001039 895 KVVSGSDDQSVLVWDKQTSQL-LEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEY 972 (1179)
Q Consensus 895 ~l~sgs~dg~I~iwd~~t~~~-~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~ 972 (1179)
....++..|.|..= .+.|+. ........+.+..+.-+ ++.++++++......-||.-...-...-......|.+|.|
T Consensus 116 ~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf 194 (302)
T PF14870_consen 116 SAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGF 194 (302)
T ss_dssp EEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE
T ss_pred cEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhcee
Confidence 44444555654332 223322 22233445667777766 5565555555444567775433233333345688999999
Q ss_pred cCCCCEEEEEeCCCeEEEEe-CCCCceeEE----eecCCCCeEEEEEc-CCEEEEEeCCCcEEEEEccCCeeeEEee---
Q 001039 973 DDSTGILAAGGRDAVANIWD-IRAGRQMHK----FLGHTKWIRSIRMD-RDTVITGSDDWTARMWSISRGTCDAVLA--- 1043 (1179)
Q Consensus 973 sp~~~~l~sgs~dg~I~iwD-~~~~~~~~~----~~~~~~~I~sl~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~--- 1043 (1179)
+|++.+.+++ ..|.|+.=+ ....+.-.. .....-.+..+++. ++.+.+++..|++. ...+.|+.-+...
T Consensus 195 ~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~ 272 (302)
T PF14870_consen 195 SPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGE 272 (302)
T ss_dssp -TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGT
T ss_pred cCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECcccc
Confidence 9998876655 788888877 222222211 11122347888885 45666666677554 3445565444433
Q ss_pred cCCcCEEEEEEecCCCEEEEEeCCCcEEEE
Q 001039 1044 CHAGPVQCVEYSSSDRGIITGSSDGLLRFW 1073 (1179)
Q Consensus 1044 ~h~~~V~~l~~spdg~~l~sgs~Dg~I~iw 1073 (1179)
.-...++.+.|..+.+-++.| .+|.+--|
T Consensus 273 ~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 273 NVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp TSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred CCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 234568899998776666655 78876544
No 423
>PRK10115 protease 2; Provisional
Probab=94.45 E-value=20 Score=45.66 Aligned_cols=197 Identities=10% Similarity=0.068 Sum_probs=94.9
Q ss_pred EEEEEccCCCceeeccC-----c---eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceec
Q 001039 772 VQSMFSREASSRSHSFS-----R---VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWD 843 (1179)
Q Consensus 772 ~~~~fSpdg~~las~~~-----d---I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~ 843 (1179)
..++|++||+.++.+.. . |+.|++.++... ...++....+...-..+.
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~-----------------d~lv~~e~~~~~~~~~~~------- 230 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQ-----------------DELVYEEKDDTFYVSLHK------- 230 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhH-----------------CeEEEeeCCCCEEEEEEE-------
Confidence 34799999987655432 1 777788776310 222333333333311122
Q ss_pred cccccCCCCEEEEEeC---CCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeC----CCcEEEEECC-CCeE
Q 001039 844 LVGDREDAGFFISGST---DCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSD----DQSVLVWDKQ-TSQL 915 (1179)
Q Consensus 844 ~~~~s~d~~~Lasgs~---Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~----dg~I~iwd~~-t~~~ 915 (1179)
+.|+++++..+. ++.+.+|+...........+....+....+...+..+...+. ...|...++. .++.
T Consensus 231 ----s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~ 306 (686)
T PRK10115 231 ----TTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQW 306 (686)
T ss_pred ----cCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEEEcCCCCCceEEEecCCCcccC
Confidence 257777654433 457888885432222222222222222223222233333332 2234444544 2222
Q ss_pred EEEeecC-C-CcEEEEEEeCCCEEEEEEcCCeEEEEeCCC-CeEEEEec-cCCCcEEEEEEc--CCCC-EEEEEe---CC
Q 001039 916 LEELKGH-D-AQVSCVRMLSGERVLTASHDGTVKMWDVRT-DTCVATVG-RCSSAVLCMEYD--DSTG-ILAAGG---RD 985 (1179)
Q Consensus 916 ~~~~~~h-~-~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~-~~~~~~~~-~~~~~v~~l~~s--p~~~-~l~sgs---~d 985 (1179)
..+-.+ . ..+..+.+..+..+++...+|.-+++-+.. +..+..+. .....+..+..+ +++. .+++.+ .-
T Consensus 307 -~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P 385 (686)
T PRK10115 307 -EELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTP 385 (686)
T ss_pred -eEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCC
Confidence 233333 2 367778877666666777777755554432 22333332 222233333444 3444 443333 34
Q ss_pred CeEEEEeCCCCc
Q 001039 986 AVANIWDIRAGR 997 (1179)
Q Consensus 986 g~I~iwD~~~~~ 997 (1179)
+.+..+|..+++
T Consensus 386 ~~~y~~d~~~~~ 397 (686)
T PRK10115 386 DTLFELDMDTGE 397 (686)
T ss_pred CEEEEEECCCCc
Confidence 678899988764
No 424
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.37 E-value=8.3 Score=44.85 Aligned_cols=146 Identities=14% Similarity=0.139 Sum_probs=72.4
Q ss_pred CCCCEEEEEe--CC----CcEEEEcCCCCCceeEEEeccccccEE-----EEecCCCEEEEEe-----------------
Q 001039 849 EDAGFFISGS--TD----CLVKIWDPSLRGSELRATLKGHTRTVR-----AINSDRGKVVSGS----------------- 900 (1179)
Q Consensus 849 ~d~~~Lasgs--~D----g~I~lWd~~~~~~~~~~~l~~h~~~v~-----~~s~d~~~l~sgs----------------- 900 (1179)
|+|+.++|+- .+ |-+.+.|-+ +.++............ .+.|..+.++|..
T Consensus 139 p~G~imIS~lGd~~G~g~Ggf~llD~~--tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~ 216 (461)
T PF05694_consen 139 PDGRIMISALGDADGNGPGGFVLLDGE--TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLE 216 (461)
T ss_dssp SS--EEEEEEEETTS-S--EEEEE-TT--T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHH
T ss_pred CCccEEEEeccCCCCCCCCcEEEEcCc--cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhh
Confidence 7888888753 22 346666633 3444444433222111 2356566666643
Q ss_pred ---CCCcEEEEECCCCeEEEEeecCCC--cEEEEEEe-C--CCE-EEEEEcCCeEEEEeC-CCCeE----EEEecc----
Q 001039 901 ---DDQSVLVWDKQTSQLLEELKGHDA--QVSCVRML-S--GER-VLTASHDGTVKMWDV-RTDTC----VATVGR---- 962 (1179)
Q Consensus 901 ---~dg~I~iwd~~t~~~~~~~~~h~~--~V~~l~~s-~--~~~-l~sgs~dg~I~iwd~-~~~~~----~~~~~~---- 962 (1179)
...++.+||+.+.+.++++.-... ....+.|. + ..+ ++.+...++|..|-- +.++. +..+..
T Consensus 217 ~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 217 AGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp HH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred cccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 356899999999999999875443 35567776 2 223 444445556655543 34432 222211
Q ss_pred -C------------CCcEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCC
Q 001039 963 -C------------SSAVLCMEYDDSTGILAAGG-RDAVANIWDIRAG 996 (1179)
Q Consensus 963 -~------------~~~v~~l~~sp~~~~l~sgs-~dg~I~iwD~~~~ 996 (1179)
. ..-|+.+..|.|.++|...+ .+|.|+.||+...
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 0 24478999999999998777 5899999999864
No 425
>PLN02153 epithiospecifier protein
Probab=94.24 E-value=10 Score=43.89 Aligned_cols=185 Identities=12% Similarity=0.052 Sum_probs=88.0
Q ss_pred CCCEEEEEEcC-------CeEEEEeCCCCeEEEEecc---CCC---cEEEEEEcCCCCEEEEEeCC-----CeEEEEeCC
Q 001039 933 SGERVLTASHD-------GTVKMWDVRTDTCVATVGR---CSS---AVLCMEYDDSTGILAAGGRD-----AVANIWDIR 994 (1179)
Q Consensus 933 ~~~~l~sgs~d-------g~I~iwd~~~~~~~~~~~~---~~~---~v~~l~~sp~~~~l~sgs~d-----g~I~iwD~~ 994 (1179)
++..++.|+.+ ..+.+||..+.+....-.. ... ....+. -++++++.|+.+ ..+.+||..
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA--VGTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE--ECCEEEEECCCCCCCccCcEEEEECC
Confidence 44555555542 3577888877654322111 010 111222 245666677643 357889987
Q ss_pred CCceeE--Eeec---CCC-CeEEE-EEcCCEEEEEeCC-----------CcEEEEEccCCeeeEEeecC---CcC-EEEE
Q 001039 995 AGRQMH--KFLG---HTK-WIRSI-RMDRDTVITGSDD-----------WTARMWSISRGTCDAVLACH---AGP-VQCV 1052 (1179)
Q Consensus 995 ~~~~~~--~~~~---~~~-~I~sl-~~~~~~l~sgs~d-----------g~I~iwd~~~~~~~~~~~~h---~~~-V~~l 1052 (1179)
+.+-.. .+.. ... .-.++ ..++.+++.|+.+ ..+.+||..+.+-...-... ... -.++
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~ 189 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGF 189 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceE
Confidence 754322 1110 111 11222 3345566666643 24778888766433211100 111 1122
Q ss_pred EEecCCCEEEEEeCC-------------CcEEEEEcCCCCcceEEEee---cccCceEEEEecCCCEEEEEECC------
Q 001039 1053 EYSSSDRGIITGSSD-------------GLLRFWENDDAGGIKCVKNV---TIHSSAILSINAGDHWLGIGAAD------ 1110 (1179)
Q Consensus 1053 ~~spdg~~l~sgs~D-------------g~I~iwd~~~~~~~~~~~~~---~~h~~~i~sis~dg~~lasgs~D------ 1110 (1179)
+ .-+++..+.|+.+ ..+.+||..+.. ...+... ........++..++++++.|+..
T Consensus 190 ~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~-W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 267 (341)
T PLN02153 190 A-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK-WTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKG 267 (341)
T ss_pred E-EECCeEEEEeccccccccCCccceecCceEEEEcCCCc-EEeccccCCCCCCcceeeeEEECCEEEEECcccCCcccc
Confidence 2 2356666655432 458888887732 3333221 11112223345567778887742
Q ss_pred --------CcEEEEeCCCC
Q 001039 1111 --------NSMSLFHRPQE 1121 (1179)
Q Consensus 1111 --------g~I~iwd~~~~ 1121 (1179)
+.+..+|..+.
T Consensus 268 ~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 268 HLGPGTLSNEGYALDTETL 286 (341)
T ss_pred ccccccccccEEEEEcCcc
Confidence 25777787643
No 426
>PLN02153 epithiospecifier protein
Probab=94.06 E-value=6.3 Score=45.61 Aligned_cols=186 Identities=9% Similarity=0.042 Sum_probs=92.4
Q ss_pred CCCEEEEEeCC-------CcEEEEcCCCCCceeEEEecc-ccc---cEEEEecCCCEEEEEeCC-----CcEEEEECCCC
Q 001039 850 DAGFFISGSTD-------CLVKIWDPSLRGSELRATLKG-HTR---TVRAINSDRGKVVSGSDD-----QSVLVWDKQTS 913 (1179)
Q Consensus 850 d~~~Lasgs~D-------g~I~lWd~~~~~~~~~~~l~~-h~~---~v~~~s~d~~~l~sgs~d-----g~I~iwd~~t~ 913 (1179)
++.+.+.|+.+ ..+.+||+............. ... ...+..-+++.++.|+.+ ..+.+||..+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 111 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN 111 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC
Confidence 35566666653 357788876433332221111 010 122334466667777653 35778898876
Q ss_pred eEEEE--eec---CCC-cEEEEEEeCCCEEEEEEcC-----------CeEEEEeCCCCeEEEEecc-----CCCcEEEEE
Q 001039 914 QLLEE--LKG---HDA-QVSCVRMLSGERVLTASHD-----------GTVKMWDVRTDTCVATVGR-----CSSAVLCME 971 (1179)
Q Consensus 914 ~~~~~--~~~---h~~-~V~~l~~s~~~~l~sgs~d-----------g~I~iwd~~~~~~~~~~~~-----~~~~v~~l~ 971 (1179)
+-... +.. ... .-.+++..++..++.|+.+ ..+.+||..+.+-...-.. ..... +++
T Consensus 112 ~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~-~~~ 190 (341)
T PLN02153 112 EWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGA-GFA 190 (341)
T ss_pred EEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcc-eEE
Confidence 54321 110 111 1223333466667777753 2577889887764432110 01111 222
Q ss_pred EcCCCCEEEEEeCC-------------CeEEEEeCCCCceeEEe-----ecCCCCeEEEEEcCCEEEEEeCC--------
Q 001039 972 YDDSTGILAAGGRD-------------AVANIWDIRAGRQMHKF-----LGHTKWIRSIRMDRDTVITGSDD-------- 1025 (1179)
Q Consensus 972 ~sp~~~~l~sgs~d-------------g~I~iwD~~~~~~~~~~-----~~~~~~I~sl~~~~~~l~sgs~d-------- 1025 (1179)
. -++++++.|+.+ ..+.+||..+.+-...- ........++.+.+.+++.|+..
T Consensus 191 ~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 269 (341)
T PLN02153 191 V-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHL 269 (341)
T ss_pred E-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCcccccc
Confidence 2 355655655432 45888998876543221 11112233444566677777742
Q ss_pred ------CcEEEEEccCCe
Q 001039 1026 ------WTARMWSISRGT 1037 (1179)
Q Consensus 1026 ------g~I~iwd~~~~~ 1037 (1179)
..+..+|..+.+
T Consensus 270 ~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 270 GPGTLSNEGYALDTETLV 287 (341)
T ss_pred ccccccccEEEEEcCccE
Confidence 256778876654
No 427
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.02 E-value=13 Score=41.88 Aligned_cols=225 Identities=12% Similarity=0.064 Sum_probs=101.2
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCeEEEEee---cCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeE-EEEecc
Q 001039 887 RAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELK---GHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTC-VATVGR 962 (1179)
Q Consensus 887 ~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~---~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~ 962 (1179)
.++..+++....++..|. .+...+.|+.-..+. .-......+...+......++..|.|..=. +.|+. ......
T Consensus 65 ~~I~f~~~~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~-DgG~tW~~~~~~ 142 (302)
T PF14870_consen 65 NSISFDGNEGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTT-DGGKTWQAVVSE 142 (302)
T ss_dssp EEEEEETTEEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEES-STTSSEEEEE-S
T ss_pred EEEEecCCceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeC-CCCCCeeEcccC
Confidence 344444444444555553 344444444322221 112233344444444555555556543322 33332 233344
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC-EEEEEeCCCcEEEEEc-cCCeeeE
Q 001039 963 CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD-TVITGSDDWTARMWSI-SRGTCDA 1040 (1179)
Q Consensus 963 ~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~-~l~sgs~dg~I~iwd~-~~~~~~~ 1040 (1179)
..+.+..+..+++|++++++.......-||--...-...-+.....|.++.|+++ .+......|.|+.=+. ...+.-.
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWS 222 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE-
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccc
Confidence 5677888999999998888766555667875433223333345678999999765 4545558888888772 2222111
Q ss_pred E----eecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEE
Q 001039 1041 V----LACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMS 1114 (1179)
Q Consensus 1041 ~----~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~ 1114 (1179)
. .....-.+..++|.+++...++|+ .|.+ +...+.++..+.......-....+.+ ..+.+-++ -+.+|.|-
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll 299 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLL 299 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEE
T ss_pred cccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEE
Confidence 1 111223478999999887777664 4543 44455544444433322223334443 22334444 44677765
Q ss_pred EE
Q 001039 1115 LF 1116 (1179)
Q Consensus 1115 iw 1116 (1179)
-|
T Consensus 300 ~~ 301 (302)
T PF14870_consen 300 RY 301 (302)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 428
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.87 E-value=13 Score=43.46 Aligned_cols=186 Identities=19% Similarity=0.152 Sum_probs=106.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeecCC--CcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCC-CcEEE
Q 001039 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHD--AQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCS-SAVLC 969 (1179)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~--~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~-~~v~~ 969 (1179)
+..+..+..+|.|.-.|.++++.+....... ..+.+-....+..++.++.+|.+..+|.++|+.+....... ..+..
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 4456666788888888888888765443221 22222222234568899999999999998999888876554 11222
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCC---CeE-EEEEcCCEEEEEeC--CCcEEEEEccCCeeeEEee
Q 001039 970 MEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTK---WIR-SIRMDRDTVITGSD--DWTARMWSISRGTCDAVLA 1043 (1179)
Q Consensus 970 l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~---~I~-sl~~~~~~l~sgs~--dg~I~iwd~~~~~~~~~~~ 1043 (1179)
-..-.++ .+..++.+|.+...|..+|+.......... .+. ........++.+.. ++.+.-.|..+|+.....+
T Consensus 148 ~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 148 PPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred CcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence 2222233 344444789999999998888766433221 111 11133445566655 6677788888887776643
Q ss_pred cCC----cCEEEEEEec-----CCCEEEEEeCCCcEEEEEcCCCC
Q 001039 1044 CHA----GPVQCVEYSS-----SDRGIITGSSDGLLRFWENDDAG 1079 (1179)
Q Consensus 1044 ~h~----~~V~~l~~sp-----dg~~l~sgs~Dg~I~iwd~~~~~ 1079 (1179)
.+. ..+....... .+..+..++.+|.+...|..+++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~ 271 (370)
T COG1520 227 VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGE 271 (370)
T ss_pred eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCc
Confidence 111 1110000000 12223566677777777777743
No 429
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.57 E-value=6.8 Score=42.51 Aligned_cols=182 Identities=14% Similarity=0.189 Sum_probs=101.4
Q ss_pred cCCCCEEEEEeCC-----CcEEEEcCCCCCceeEEEeccccccEE--EEecCCCEEEEEeCC------------------
Q 001039 848 REDAGFFISGSTD-----CLVKIWDPSLRGSELRATLKGHTRTVR--AINSDRGKVVSGSDD------------------ 902 (1179)
Q Consensus 848 s~d~~~Lasgs~D-----g~I~lWd~~~~~~~~~~~l~~h~~~v~--~~s~d~~~l~sgs~d------------------ 902 (1179)
|+||.+|...-.| |.|-|||.. .....+..+..|.-.-. .+.+||+.++.+...
T Consensus 122 s~dG~~LYATEndfd~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMe 200 (366)
T COG3490 122 SPDGRLLYATENDFDPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSME 200 (366)
T ss_pred CCCCcEEEeecCCCCCCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcC
Confidence 3899999876443 789999976 44444455666654333 457899988876431
Q ss_pred CcEEEEECCCCeEEEEe--e--cCCCcEEEEEEeCCCEEEEEEc-CCe-----EEEEeCCCCeEEEEecc-------CCC
Q 001039 903 QSVLVWDKQTSQLLEEL--K--GHDAQVSCVRMLSGERVLTASH-DGT-----VKMWDVRTDTCVATVGR-------CSS 965 (1179)
Q Consensus 903 g~I~iwd~~t~~~~~~~--~--~h~~~V~~l~~s~~~~l~sgs~-dg~-----I~iwd~~~~~~~~~~~~-------~~~ 965 (1179)
-++.+.|..+|+.+... . .+.-.|..++...+..++.|+. .|. --+=....++.+..+.- ...
T Consensus 201 PSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~an 280 (366)
T COG3490 201 PSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFAN 280 (366)
T ss_pred ccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHh
Confidence 12333343444443321 1 2334466666554444444432 111 01111122333333321 233
Q ss_pred cEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcEEEEE
Q 001039 966 AVLCMEYDDSTGILAAGG-RDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTARMWS 1032 (1179)
Q Consensus 966 ~v~~l~~sp~~~~l~sgs-~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd 1032 (1179)
.|-+++.+.+..+++..+ ..+...+||..+|..+..-. -..+..++....-+++.+.+|.+..+.
T Consensus 281 YigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~--l~daaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 281 YIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA--LPDAAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred hhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc--ccccccceeccCceEEecCCceEEecc
Confidence 567888887666666655 44567899999998775432 122334555556677777788888774
No 430
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.12 E-value=23 Score=41.85 Aligned_cols=145 Identities=12% Similarity=0.103 Sum_probs=86.3
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCCceeEEE-e-ccccccEEEE------ecCCCEEEEEeCCCcEEEEECCC--Ce----
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRGSELRAT-L-KGHTRTVRAI------NSDRGKVVSGSDDQSVLVWDKQT--SQ---- 914 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~-l-~~h~~~v~~~------s~d~~~l~sgs~dg~I~iwd~~t--~~---- 914 (1179)
.+...+++||.+|.++||+....+...... + ..-..+|..+ +......++.-.-..+.+|.+.. |.
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence 456799999999999999986433221111 1 1123566644 22233333445567788887621 11
Q ss_pred ---EEEEeecCC--CcEEEEEEe-----C-CCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEe
Q 001039 915 ---LLEELKGHD--AQVSCVRML-----S-GERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGG 983 (1179)
Q Consensus 915 ---~~~~~~~h~--~~V~~l~~s-----~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs 983 (1179)
.+.....|. .....+++- . .+.+.+-+.||.+.+++-+.-.....+.. ---...+.|.+....+++++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEec
Confidence 112222232 122223322 1 46788999999999999765554444433 22234577888888899999
Q ss_pred CCCeEEEEeCC
Q 001039 984 RDAVANIWDIR 994 (1179)
Q Consensus 984 ~dg~I~iwD~~ 994 (1179)
.+..+..|...
T Consensus 194 ss~~l~~Yky~ 204 (418)
T PF14727_consen 194 SSWTLECYKYQ 204 (418)
T ss_pred CceeEEEecHH
Confidence 88888888753
No 431
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.11 E-value=11 Score=41.36 Aligned_cols=180 Identities=13% Similarity=0.201 Sum_probs=109.8
Q ss_pred EEEEcCCCCCceeEEEeccccccEEE--EecCCCEEEEEeCCCcEEEEECCCCeEEEEeecC-CCcEEEEEEeCCCEEE-
Q 001039 863 VKIWDPSLRGSELRATLKGHTRTVRA--INSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGH-DAQVSCVRMLSGERVL- 938 (1179)
Q Consensus 863 I~lWd~~~~~~~~~~~l~~h~~~v~~--~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h-~~~V~~l~~s~~~~l~- 938 (1179)
.-+|..+....-..+.+.|-...+.+ ++|+.+.|++......-.+|=..+|+.++++.-. -...-.+.+..++.++
T Consensus 65 ~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi 144 (316)
T COG3204 65 IARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVI 144 (316)
T ss_pred hhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEE
Confidence 55665442222222224444455654 5899999999998888888888889999887522 2234456777544444
Q ss_pred EEEcCCeEEEEeCCCCeEEEE-------e---ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce---eEEeecC
Q 001039 939 TASHDGTVKMWDVRTDTCVAT-------V---GRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ---MHKFLGH 1005 (1179)
Q Consensus 939 sgs~dg~I~iwd~~~~~~~~~-------~---~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~---~~~~~~~ 1005 (1179)
+--.++.+.++.+..+..+.. + ...+.....++|+|..+.+..+-...-+.||.+..+.. .+....+
T Consensus 145 ~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~ 224 (316)
T COG3204 145 VDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDP 224 (316)
T ss_pred EehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCc
Confidence 444678888877765532211 1 11255678999999998888888777777776653321 1111111
Q ss_pred C-------CCeEEEEEc---CCEEEEEeCCCcEEEEEccCCeeeEEee
Q 001039 1006 T-------KWIRSIRMD---RDTVITGSDDWTARMWSISRGTCDAVLA 1043 (1179)
Q Consensus 1006 ~-------~~I~sl~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 1043 (1179)
. ..+.++.++ +..++-+.+++.+.-.|.. |..+..+.
T Consensus 225 ~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls 271 (316)
T COG3204 225 TADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLS 271 (316)
T ss_pred ccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence 1 234556665 3477778888888888854 44444443
No 432
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.00 E-value=0.015 Score=70.33 Aligned_cols=208 Identities=15% Similarity=0.234 Sum_probs=114.1
Q ss_pred EEecccCceEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCCCCCceeEEEeccc-----cccEE----E-Eec
Q 001039 822 IIRGHAGAITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPSLRGSELRATLKGH-----TRTVR----A-INS 891 (1179)
Q Consensus 822 ~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h-----~~~v~----~-~s~ 891 (1179)
.++|..|.|-.++|... ..|.+. -.-|.+.|||++.-.+++...+.-| ...+. | +.+
T Consensus 127 l~kgf~G~v~dl~fah~--------~~pk~~-----~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~ 193 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHT--------KCPKGR-----RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAV 193 (1283)
T ss_pred HHhcCCCCccccccccc--------CChHHH-----HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeeccccc
Confidence 46778888888888521 113333 2346789999874444333222211 11111 1 234
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEE
Q 001039 892 DRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCME 971 (1179)
Q Consensus 892 d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~ 971 (1179)
+..++..+-.+|++++.++++... ..+.+|..++..+++...+++...+
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~------------------------------ 242 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS------------------------------ 242 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee------------------------------
Confidence 556677777778887776654433 3445677777777765333332222
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCC-----CCceeEEeecCCC-CeEEEEEcCC-----------EEEEEe-CCCcEEEEEc
Q 001039 972 YDDSTGILAAGGRDAVANIWDIR-----AGRQMHKFLGHTK-WIRSIRMDRD-----------TVITGS-DDWTARMWSI 1033 (1179)
Q Consensus 972 ~sp~~~~l~sgs~dg~I~iwD~~-----~~~~~~~~~~~~~-~I~sl~~~~~-----------~l~sgs-~dg~I~iwd~ 1033 (1179)
.+|||..++.++.||.++.|.+. ...+++..+.|.+ +-.|.-++.+ ++++++ .+..+++|..
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 67888888888888877777543 3345556666663 2222223221 344443 4567999988
Q ss_pred cCCeeeEEeecCCcCEEEEEEecCCC------------EEEEEeCCCcEEEEEcC
Q 001039 1034 SRGTCDAVLACHAGPVQCVEYSSSDR------------GIITGSSDGLLRFWEND 1076 (1179)
Q Consensus 1034 ~~~~~~~~~~~h~~~V~~l~~spdg~------------~l~sgs~Dg~I~iwd~~ 1076 (1179)
...+|. +...-..|..+. -++|. .+++-+-++.|.+|--.
T Consensus 323 a~w~Cl--l~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~ 374 (1283)
T KOG1916|consen 323 APWQCL--LDKLIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNR 374 (1283)
T ss_pred cchhhh--hhhcccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcc
Confidence 777765 111122233333 22222 13345567888888544
No 433
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.94 E-value=14 Score=39.00 Aligned_cols=202 Identities=12% Similarity=0.122 Sum_probs=109.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEE-EeecCCCcEEEEEEe--CC--CEEEEEEcCCeEEEEeCC--CCeEEEEec----
Q 001039 893 RGKVVSGSDDQSVLVWDKQTSQLLE-ELKGHDAQVSCVRML--SG--ERVLTASHDGTVKMWDVR--TDTCVATVG---- 961 (1179)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~-~~~~h~~~V~~l~~s--~~--~~l~sgs~dg~I~iwd~~--~~~~~~~~~---- 961 (1179)
+.++.+--..|.|.-||..+.+..+ ++.+. +..++.+. ++ ...+.++..-.|--||.. ......++.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 3455555566778889988765543 23332 23344443 21 233333333344557733 223333321
Q ss_pred -cCCCcEEEEEEcCCCCEEEEEeC-C---------CeEEEEeCCCCceeEEeecCCCCeEEEEEcCC---EEEEEeCCCc
Q 001039 962 -RCSSAVLCMEYDDSTGILAAGGR-D---------AVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD---TVITGSDDWT 1027 (1179)
Q Consensus 962 -~~~~~v~~l~~sp~~~~l~sgs~-d---------g~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~---~l~sgs~dg~ 1027 (1179)
..+.....-..+|+|++. .|.. | |.++.|-. +..+..+...-.--+.++|+.+ +.++-+.+-+
T Consensus 105 d~kknR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~ 181 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYE 181 (310)
T ss_pred hHHhcccccCccCCCCcee-eeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCcEEEEEccCceE
Confidence 123455666789999984 4432 2 33444432 1222222222233456778644 5666777888
Q ss_pred EEEEE--ccCCee-----eEEeec----CCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEE
Q 001039 1028 ARMWS--ISRGTC-----DAVLAC----HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILS 1096 (1179)
Q Consensus 1028 I~iwd--~~~~~~-----~~~~~~----h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~s 1096 (1179)
|.-|| ..+|.. +..++. ..-..-.++...+|+..++.-..|+|.-.|..++ +.+..+.-....+++
T Consensus 182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG---K~L~eiklPt~qits 258 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG---KILLEIKLPTPQITS 258 (310)
T ss_pred EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC---cEEEEEEcCCCceEE
Confidence 87787 455432 222221 1112234566778888888889999999999984 555555555667777
Q ss_pred EecCCC
Q 001039 1097 INAGDH 1102 (1179)
Q Consensus 1097 is~dg~ 1102 (1179)
....|+
T Consensus 259 ccFgGk 264 (310)
T KOG4499|consen 259 CCFGGK 264 (310)
T ss_pred EEecCC
Confidence 665544
No 434
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.57 E-value=0.33 Score=37.92 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=28.3
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1146 VAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1146 ~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
...|.+++|+|...+||.|+.||.|.+++++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3469999999999999999999999999984
No 435
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.33 E-value=27 Score=40.81 Aligned_cols=152 Identities=15% Similarity=0.066 Sum_probs=94.0
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeecCCC-cEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCC---CcEE
Q 001039 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDA-QVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCS---SAVL 968 (1179)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~-~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~---~~v~ 968 (1179)
+..++.++.+|.+...|..+|+.+........ .+..-....+..+..++.+|.+...|..+|+......... ..+.
T Consensus 111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~ 190 (370)
T COG1520 111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIY 190 (370)
T ss_pred CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccc
Confidence 34488889999999999989999988876661 1111112234455566678999999999998877754322 1111
Q ss_pred EEEEcCCCCEEEEEeC--CCeEEEEeCCCCceeEEeecCC----CCe-EEEEE------cCCEEEEEeCCCcEEEEEccC
Q 001039 969 CMEYDDSTGILAAGGR--DAVANIWDIRAGRQMHKFLGHT----KWI-RSIRM------DRDTVITGSDDWTARMWSISR 1035 (1179)
Q Consensus 969 ~l~~sp~~~~l~sgs~--dg~I~iwD~~~~~~~~~~~~~~----~~I-~sl~~------~~~~l~sgs~dg~I~iwd~~~ 1035 (1179)
.-....++ .+..+.. ++.+.-.|..+|......+.+. ..+ ..-.. .+..+..++.+|.+...|..+
T Consensus 191 ~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~ 269 (370)
T COG1520 191 GSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADT 269 (370)
T ss_pred cCceeecc-eEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCC
Confidence 11112233 3444444 5677888888887765532111 111 00111 223457777888899999999
Q ss_pred CeeeEEeecC
Q 001039 1036 GTCDAVLACH 1045 (1179)
Q Consensus 1036 ~~~~~~~~~h 1045 (1179)
++.+......
T Consensus 270 G~~~W~~~~~ 279 (370)
T COG1520 270 GELIWSFPAG 279 (370)
T ss_pred CceEEEEecc
Confidence 9998887753
No 436
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.25 E-value=4.7 Score=49.24 Aligned_cols=170 Identities=12% Similarity=0.066 Sum_probs=93.9
Q ss_pred CcEEEEECCCCeEEEEeecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEE--e--ccCCCcEEEEEEcCCCCE
Q 001039 903 QSVLVWDKQTSQLLEELKGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVAT--V--GRCSSAVLCMEYDDSTGI 978 (1179)
Q Consensus 903 g~I~iwd~~t~~~~~~~~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~--~--~~~~~~v~~l~~sp~~~~ 978 (1179)
-.|+|++. +|+.+..+.-....+-.+.|++...+++...+|++.+|++.. +.+.. . ......|..+.+..+|
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCc--
Confidence 45788885 477776665555588899999999999999999999999753 32222 1 1223345555555555
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEeec---CCCCeEEEEE-cCC----EEEEEe-CCC-cEEEEEccCCeeeEEeecCCcC
Q 001039 979 LAAGGRDAVANIWDIRAGRQMHKFLG---HTKWIRSIRM-DRD----TVITGS-DDW-TARMWSISRGTCDAVLACHAGP 1048 (1179)
Q Consensus 979 l~sgs~dg~I~iwD~~~~~~~~~~~~---~~~~I~sl~~-~~~----~l~sgs-~dg-~I~iwd~~~~~~~~~~~~h~~~ 1048 (1179)
+++-..+|.+.+.+-.......++.. ....-.|... .+. .++-.. ..| .+..-+..+.+. ..+....+.
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~-~~~~~~~~~ 218 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQL-HALSWPNSS 218 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccc-cccCCCCce
Confidence 44444456655543222222223222 1111122221 221 111111 111 011111111111 112222466
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1049 VQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1049 V~~l~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
+..+..||+.++|+--..+|.|.+-+.+.
T Consensus 219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~ 247 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTETGKIWVVSIDL 247 (829)
T ss_pred EEEEEEcCCcceEEEEecCCcEEEEecch
Confidence 78899999999999999999999988776
No 437
>PF07792 Afi1: Docking domain of Afi1 for Arf3 in vesicle trafficking; InterPro: IPR012860 This domain occurs at the N terminus of Afi1, a protein necessary for vesicle trafficking in yeast. This domain is the interacting region of the protein which binds to Arf3. Afi1 is distributed asymmetrically at the plasma membrane and is required for polarized distribution of Arf3 but not of an Arf3 guanine nucleotide-exchange factor, Yel1p. However, Afi1 is not required for targeting of Arf3 or Yel1p to the plasma membrane. Afi1 functions as an Arf3 polarization-specific adapter and participates in development of polarity. Although Arf3 is the homologue of human Arf6 it does not function in the same way, not being necessary for endocytosis or for mating factor receptor internalisation. In the S phase, however, it is concentrated at the plasma membrane of the emerging bud. Because of its polarized localisation and its critical function in the normal budding pattern of yeast, Arf3 is probably a regulator of vesicle trafficking, which is important for polarized growth.
Probab=92.02 E-value=0.25 Score=48.77 Aligned_cols=49 Identities=24% Similarity=0.397 Sum_probs=33.5
Q ss_pred eEEEEEEccCCCccccCCCCCCCCCccccccccccccccCCCCCCCCCCCCCCcccCCCceEEeecC
Q 001039 5 FEYFVVCGIGPEIRTLDGSKGYHGPEYYYLSSVLDQFPPLNHSLYTPPPPQLSTCVLPAGVQFYSSG 71 (1179)
Q Consensus 5 ~dyfvvvG~~~~~~~~~~~~~~~~~~~~~~p~vl~~yP~~~~~~~~~~~~~~~~fc~P~g~~~~~~~ 71 (1179)
+||.++.-.|.+ .| |.+..+||..-... ..+..++..++|+|+..+.+.
T Consensus 2 veyIL~AEFDid-------~G---------p~l~hQYP~~i~g~--~de~~LAelMLPDg~h~r~~D 50 (145)
T PF07792_consen 2 VEYILLAEFDID-------KG---------PVLKHQYPSPIPGL--EDEHMLAELMLPDGAHKRSED 50 (145)
T ss_pred eeEEEEEEEecC-------cC---------CEEEEeCCCCccCC--ccHHHHHHhhCCcccccccCC
Confidence 577777665554 32 67899999863321 135689999999999876543
No 438
>PLN02193 nitrile-specifier protein
Probab=91.78 E-value=27 Score=42.39 Aligned_cols=186 Identities=10% Similarity=0.041 Sum_probs=92.5
Q ss_pred CCCEEEEEEcC-------CeEEEEeCCCCeEEEEecc--CCC--cEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCC
Q 001039 933 SGERVLTASHD-------GTVKMWDVRTDTCVATVGR--CSS--AVLCMEYDDSTGILAAGGRD-----AVANIWDIRAG 996 (1179)
Q Consensus 933 ~~~~l~sgs~d-------g~I~iwd~~~~~~~~~~~~--~~~--~v~~l~~sp~~~~l~sgs~d-----g~I~iwD~~~~ 996 (1179)
++..++.|+.+ ..+..||+.+.+....-.. ... ........-++.+.+.|+.+ ..+..+|+.+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 45556666643 3477888887654421110 111 11111122345666666654 35888998875
Q ss_pred ceeEEee-----cCCCCeEEEEEcCCEEEEEeCCC-----cEEEEEccCCeeeEEee-----cCCcCEEEEEEecCCCEE
Q 001039 997 RQMHKFL-----GHTKWIRSIRMDRDTVITGSDDW-----TARMWSISRGTCDAVLA-----CHAGPVQCVEYSSSDRGI 1061 (1179)
Q Consensus 997 ~~~~~~~-----~~~~~I~sl~~~~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~-----~h~~~V~~l~~spdg~~l 1061 (1179)
+-...-. ...........++.+++.|+.++ .+..||+.+.+-...-. ...... +++ .-+++..
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~-~~~-~~~gkiy 332 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA-GLE-VVQGKVW 332 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc-EEE-EECCcEE
Confidence 4332111 11112223334555666776543 46778877654322111 011111 122 2357777
Q ss_pred EEEeCC----CcEEEEEcCCCCcceEEEee---cccCceEEEEecCCCEEEEEECC--------------CcEEEEeCCC
Q 001039 1062 ITGSSD----GLLRFWENDDAGGIKCVKNV---TIHSSAILSINAGDHWLGIGAAD--------------NSMSLFHRPQ 1120 (1179)
Q Consensus 1062 ~sgs~D----g~I~iwd~~~~~~~~~~~~~---~~h~~~i~sis~dg~~lasgs~D--------------g~I~iwd~~~ 1120 (1179)
+.|+.+ ..+.+||..+.. ...+... ........+...++++++.|+.+ +.+.++|..+
T Consensus 333 viGG~~g~~~~dv~~yD~~t~~-W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t 411 (470)
T PLN02193 333 VVYGFNGCEVDDVHYYDPVQDK-WTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTET 411 (470)
T ss_pred EEECCCCCccCceEEEECCCCE-EEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCc
Confidence 777755 458899988732 3333221 11111223334567777777753 2477888765
Q ss_pred C
Q 001039 1121 E 1121 (1179)
Q Consensus 1121 ~ 1121 (1179)
.
T Consensus 412 ~ 412 (470)
T PLN02193 412 L 412 (470)
T ss_pred C
Confidence 4
No 439
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.60 E-value=2.9 Score=43.18 Aligned_cols=121 Identities=12% Similarity=0.133 Sum_probs=76.8
Q ss_pred CCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEee----c-CCCcEEEEEEeCC
Q 001039 860 DCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELK----G-HDAQVSCVRMLSG 934 (1179)
Q Consensus 860 Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~----~-h~~~V~~l~~s~~ 934 (1179)
||.-..+|.+ +.+....+. -.+.-+.+..|+..|+.+....+++.-|.++-....++. + .-..++-+.|-+|
T Consensus 110 egvaf~~d~~--t~~~lg~~~-y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG 186 (262)
T COG3823 110 EGVAFKYDAD--TLEELGRFS-YEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDG 186 (262)
T ss_pred cceeEEEChH--Hhhhhcccc-cCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeecc
Confidence 6777778855 333322222 223345678888888888877788888876654433332 2 1133455677788
Q ss_pred CEEEEEEcCCeEEEEeCCCCeEEEEec------------cCCCcEEEEEEcCCCCEEEEEe
Q 001039 935 ERVLTASHDGTVKMWDVRTDTCVATVG------------RCSSAVLCMEYDDSTGILAAGG 983 (1179)
Q Consensus 935 ~~l~sgs~dg~I~iwd~~~~~~~~~~~------------~~~~~v~~l~~sp~~~~l~sgs 983 (1179)
...+-.-.+..|...|..+|+.+..+. .+....+.+++.|++..+...+
T Consensus 187 ~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 187 ELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 877777777778888888888776652 2344567899999875554443
No 440
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.55 E-value=21 Score=40.87 Aligned_cols=110 Identities=10% Similarity=0.066 Sum_probs=57.6
Q ss_pred EecCCCEEEEEeCC-----CcEEEEECCCCeEE---EEeecCCCc--EEEEEEeCCCEEEEEEc-----CCeEEEEeCCC
Q 001039 889 INSDRGKVVSGSDD-----QSVLVWDKQTSQLL---EELKGHDAQ--VSCVRMLSGERVLTASH-----DGTVKMWDVRT 953 (1179)
Q Consensus 889 ~s~d~~~l~sgs~d-----g~I~iwd~~t~~~~---~~~~~h~~~--V~~l~~s~~~~l~sgs~-----dg~I~iwd~~~ 953 (1179)
..-++..++.|+.+ ..+..+|+.+.+.. ..+..-..+ -.+++..++..++.|+. ...+..||+.+
T Consensus 69 ~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 69 VSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred EEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCC
Confidence 34466666777754 35667777665531 222111111 12333446667777764 24688899887
Q ss_pred CeEEEEeccC-CCcEEEEEEcCCCCEEEEEeCCC----eEEEEeCCCCce
Q 001039 954 DTCVATVGRC-SSAVLCMEYDDSTGILAAGGRDA----VANIWDIRAGRQ 998 (1179)
Q Consensus 954 ~~~~~~~~~~-~~~v~~l~~sp~~~~l~sgs~dg----~I~iwD~~~~~~ 998 (1179)
.+....-.-. .......+..-++++.+.|+.++ .+..||..+.+-
T Consensus 149 ~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 149 QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 7643321111 11122222334667777777654 356888877543
No 441
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=91.52 E-value=0.58 Score=36.54 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=30.4
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce
Q 001039 963 CSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ 998 (1179)
Q Consensus 963 ~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~ 998 (1179)
....|.+++|+|...++|.|+.+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3467999999999999999999999999998 5543
No 442
>PRK13684 Ycf48-like protein; Provisional
Probab=91.50 E-value=31 Score=39.72 Aligned_cols=150 Identities=11% Similarity=0.050 Sum_probs=86.1
Q ss_pred CCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCe-EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE
Q 001039 923 DAQVSCVRMLSGERVLTASHDGTVKMWDVRTDT-CVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHK 1001 (1179)
Q Consensus 923 ~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~ 1001 (1179)
...+.++.+.++..++..+..|.+..-.-..++ ...........+.++.+.++++.+++| ..|.+.+=....|..-..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSK 250 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcccc
Confidence 456788888766666666777765532112223 222223345678999999999877665 567765433344433222
Q ss_pred eec----CCCCeEEEEEcCC-EEEEEeCCCcEEEEEccCCeeeEEee---cCCcCEEEEEEecCCCEEEEEeCCCcEEEE
Q 001039 1002 FLG----HTKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLA---CHAGPVQCVEYSSSDRGIITGSSDGLLRFW 1073 (1179)
Q Consensus 1002 ~~~----~~~~I~sl~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~---~h~~~V~~l~~spdg~~l~sgs~Dg~I~iw 1073 (1179)
... ....+.++.+.++ .++.++.+|.+.. ..+.++.-.... .-....+.+.+..+++.+++ +..|.|--|
T Consensus 251 ~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~ 328 (334)
T PRK13684 251 PIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRY 328 (334)
T ss_pred ccCCccccccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEe
Confidence 211 1234677777533 5666667776653 445454433332 22235778888777766554 477877776
Q ss_pred Ec
Q 001039 1074 EN 1075 (1179)
Q Consensus 1074 d~ 1075 (1179)
+-
T Consensus 329 ~~ 330 (334)
T PRK13684 329 VG 330 (334)
T ss_pred cC
Confidence 53
No 443
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=91.40 E-value=18 Score=41.78 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=29.4
Q ss_pred EEEeCCCEEEEEEcC-----------CeEEEEeCCCCeEEEEeccCCCcEEE-EEE-cCCCCEEEEEeCC
Q 001039 929 VRMLSGERVLTASHD-----------GTVKMWDVRTDTCVATVGRCSSAVLC-MEY-DDSTGILAAGGRD 985 (1179)
Q Consensus 929 l~~s~~~~l~sgs~d-----------g~I~iwd~~~~~~~~~~~~~~~~v~~-l~~-sp~~~~l~sgs~d 985 (1179)
++..++...+.|+.+ ..+..||..+.+....-......... .+. .-++++.+.|+.+
T Consensus 59 ~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 59 AAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred EEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 333466777777653 24777888776644322111111111 112 3467777777754
No 444
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=91.40 E-value=17 Score=42.00 Aligned_cols=94 Identities=14% Similarity=0.081 Sum_probs=43.7
Q ss_pred CCCEEEEEeCC-CcEEEEcCCCC--CceeEEEecc-ccccEEEEecCCCEEEEEeCC-----------CcEEEEECCCCe
Q 001039 850 DAGFFISGSTD-CLVKIWDPSLR--GSELRATLKG-HTRTVRAINSDRGKVVSGSDD-----------QSVLVWDKQTSQ 914 (1179)
Q Consensus 850 d~~~Lasgs~D-g~I~lWd~~~~--~~~~~~~l~~-h~~~v~~~s~d~~~l~sgs~d-----------g~I~iwd~~t~~ 914 (1179)
++++.+.|+.. ..+..+|++.. .......+.. -.........++...+.|+.+ ..+..||..+.+
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~ 96 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS 96 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCE
Confidence 35555555542 45666665311 2222222221 111122334567777777753 247778887765
Q ss_pred EEEEeecCCC---cEEEEEEeCCCEEEEEEcC
Q 001039 915 LLEELKGHDA---QVSCVRMLSGERVLTASHD 943 (1179)
Q Consensus 915 ~~~~~~~h~~---~V~~l~~s~~~~l~sgs~d 943 (1179)
-...-..... ....+...++...+.|+.+
T Consensus 97 W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 97 WQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred EecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 4332111111 1112223467777777754
No 445
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.39 E-value=9 Score=45.78 Aligned_cols=146 Identities=12% Similarity=0.188 Sum_probs=84.7
Q ss_pred CcEEEEEEeCCCEEEEEE---cCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCC----CCEEEEEeCCCeEEEEeCCC-
Q 001039 924 AQVSCVRMLSGERVLTAS---HDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDS----TGILAAGGRDAVANIWDIRA- 995 (1179)
Q Consensus 924 ~~V~~l~~s~~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~----~~~l~sgs~dg~I~iwD~~~- 995 (1179)
.++..++|.||+.++... .+|.+++=|. +.+.. -..|..+.|.|- ...+++.-....|.+|.+..
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~viGq----FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVIGQ----FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCc---cEeec----cceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 478899999988766433 2444443331 22333 356889999984 33455556678999998752
Q ss_pred ----CceeEEeecCC-C----CeEEEEEcCC--EEEEEeCCCcEEEEEccCC--eeeEEeecCCcCEEEEEEecCCCEEE
Q 001039 996 ----GRQMHKFLGHT-K----WIRSIRMDRD--TVITGSDDWTARMWSISRG--TCDAVLACHAGPVQCVEYSSSDRGII 1062 (1179)
Q Consensus 996 ----~~~~~~~~~~~-~----~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~--~~~~~~~~h~~~V~~l~~spdg~~l~ 1062 (1179)
++.+..-..+- . --....|+|+ .+++-.....-.+++++.. .....+ ...+.|.|.+|.+||++|+
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEE
Confidence 22222211111 1 1224567665 4444444443345555433 222333 4578899999999999987
Q ss_pred EEeC-CCcEEEEEcCC
Q 001039 1063 TGSS-DGLLRFWENDD 1077 (1179)
Q Consensus 1063 sgs~-Dg~I~iwd~~~ 1077 (1179)
.+-. .=.-++||-..
T Consensus 172 VAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEeCCeEEEEEecCch
Confidence 6543 33467888554
No 446
>PLN02193 nitrile-specifier protein
Probab=91.34 E-value=40 Score=40.87 Aligned_cols=185 Identities=9% Similarity=-0.001 Sum_probs=93.7
Q ss_pred cCCCEEEEEeCC-------CcEEEEECCCCeEEEEeecC----C-Cc-EEEEEEeCCCEEEEEEcC-----CeEEEEeCC
Q 001039 891 SDRGKVVSGSDD-------QSVLVWDKQTSQLLEELKGH----D-AQ-VSCVRMLSGERVLTASHD-----GTVKMWDVR 952 (1179)
Q Consensus 891 ~d~~~l~sgs~d-------g~I~iwd~~t~~~~~~~~~h----~-~~-V~~l~~s~~~~l~sgs~d-----g~I~iwd~~ 952 (1179)
.++..++.|+.+ ..+.+||+.+.+-.. .... . .. -.+++..++..++.|+.+ ..+..||+.
T Consensus 174 ~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 174 VGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred ECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECC
Confidence 345555666643 247788887765432 1110 0 01 112333356666777654 358889988
Q ss_pred CCeEEEEecc---CCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCceeEEe-----ecCCCCeEEEEEcCCEE
Q 001039 953 TDTCVATVGR---CSSAVLCMEYDDSTGILAAGGRDA-----VANIWDIRAGRQMHKF-----LGHTKWIRSIRMDRDTV 1019 (1179)
Q Consensus 953 ~~~~~~~~~~---~~~~v~~l~~sp~~~~l~sgs~dg-----~I~iwD~~~~~~~~~~-----~~~~~~I~sl~~~~~~l 1019 (1179)
+.+....-.. ........+..-++++.+.|+.++ .+..||+.+.+-...- ...........+++..+
T Consensus 253 t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiy 332 (470)
T PLN02193 253 TNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVW 332 (470)
T ss_pred CCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEE
Confidence 8765432111 111111111223556666776543 4678888765432211 01112223344567777
Q ss_pred EEEeCC----CcEEEEEccCCeeeEEeec---C-CcCEEEEEEecCCCEEEEEeCC--------------CcEEEEEcCC
Q 001039 1020 ITGSDD----WTARMWSISRGTCDAVLAC---H-AGPVQCVEYSSSDRGIITGSSD--------------GLLRFWENDD 1077 (1179)
Q Consensus 1020 ~sgs~d----g~I~iwd~~~~~~~~~~~~---h-~~~V~~l~~spdg~~l~sgs~D--------------g~I~iwd~~~ 1077 (1179)
+.++.+ ..+.+||+.+.+....-.. . .....++ ..-+++.++.|+.+ ..+.++|..+
T Consensus 333 viGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t 411 (470)
T PLN02193 333 VVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTET 411 (470)
T ss_pred EEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCccCCccccccCccceeccEEEEEcCc
Confidence 777655 4588999887764332211 0 1111222 23356777777753 2477888876
No 447
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.23 E-value=22 Score=40.66 Aligned_cols=134 Identities=13% Similarity=0.092 Sum_probs=66.7
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCcee---EEeec---CCCCeEEEEEcCCEEEEEeC-----CCcEEEEEccCCee
Q 001039 975 STGILAAGGRD-----AVANIWDIRAGRQM---HKFLG---HTKWIRSIRMDRDTVITGSD-----DWTARMWSISRGTC 1038 (1179)
Q Consensus 975 ~~~~l~sgs~d-----g~I~iwD~~~~~~~---~~~~~---~~~~I~sl~~~~~~l~sgs~-----dg~I~iwd~~~~~~ 1038 (1179)
++.+++.|+.+ ..+..+|+.+.+.. ..+.. ......+...++...+.|+. ...+..||..+.+-
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 55666777654 35777787765531 22211 11122333446666666664 23578888876543
Q ss_pred eEE--eecCCcCEEEEEEecCCCEEEEEeCCCc----EEEEEcCCCCcceEEEeecc-c-Cc---eEEEE-ecCCCEEEE
Q 001039 1039 DAV--LACHAGPVQCVEYSSSDRGIITGSSDGL----LRFWENDDAGGIKCVKNVTI-H-SS---AILSI-NAGDHWLGI 1106 (1179)
Q Consensus 1039 ~~~--~~~h~~~V~~l~~spdg~~l~sgs~Dg~----I~iwd~~~~~~~~~~~~~~~-h-~~---~i~si-s~dg~~las 1106 (1179)
... +.. .......+..-+++..+.|+.++. +..||..+.. ...+..... . .. ...++ ..++++++.
T Consensus 152 ~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~ 229 (323)
T TIGR03548 152 FELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ-WQKVADPTTDSEPISLLGAASIKINESLLLCI 229 (323)
T ss_pred eECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe-eEECCCCCCCCCceeccceeEEEECCCEEEEE
Confidence 322 111 112222333446777777876543 5678877632 333322110 0 00 11122 346778888
Q ss_pred EECC
Q 001039 1107 GAAD 1110 (1179)
Q Consensus 1107 gs~D 1110 (1179)
|+.+
T Consensus 230 GG~~ 233 (323)
T TIGR03548 230 GGFN 233 (323)
T ss_pred CCcC
Confidence 8766
No 448
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.15 E-value=7 Score=47.83 Aligned_cols=54 Identities=11% Similarity=0.039 Sum_probs=39.5
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC-CCCeEEEEEcCC
Q 001039 964 SSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH-TKWIRSIRMDRD 1017 (1179)
Q Consensus 964 ~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~-~~~I~sl~~~~~ 1017 (1179)
.+.+..+..||+.++|+.-..+|.|.+.+....+....+... ......++|.++
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence 467888999999999999999999999998877776665421 122235666544
No 449
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.65 E-value=7.3 Score=40.40 Aligned_cols=171 Identities=12% Similarity=0.008 Sum_probs=96.1
Q ss_pred cCCCEEEEEeC--CCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEE-EEEEcCCeEEEEeCCCCeEEEEeccCCCc
Q 001039 891 SDRGKVVSGSD--DQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERV-LTASHDGTVKMWDVRTDTCVATVGRCSSA 966 (1179)
Q Consensus 891 ~d~~~l~sgs~--dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~~~~ 966 (1179)
-+|..+.+.+. ...|++||+.+|+.+.+-.-....+..=-.. -++.+ ...-.+|.-..+|.++-+++..+. ..+.
T Consensus 54 ~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~Ge 132 (262)
T COG3823 54 LDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGE 132 (262)
T ss_pred eCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCc
Confidence 34555555543 3579999999999877654332122111111 13333 344567888899998888777663 2333
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec--CC---CCeEEEEE-cCCEEEEEeCCCcEEEEEccCCeeeE
Q 001039 967 VLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG--HT---KWIRSIRM-DRDTVITGSDDWTARMWSISRGTCDA 1040 (1179)
Q Consensus 967 v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~--~~---~~I~sl~~-~~~~l~sgs~dg~I~iwd~~~~~~~~ 1040 (1179)
=+.++. |+.-++.++....++.-|.++-....+... .. ..++.+.| ++...+-.-.+..|...|.++|+.+.
T Consensus 133 GWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 133 GWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred ceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEE
Confidence 345543 444466666566777777766444333221 11 12334444 45555544455556666666666554
Q ss_pred Eee------------cCCcCEEEEEEecCCC-EEEEE
Q 001039 1041 VLA------------CHAGPVQCVEYSSSDR-GIITG 1064 (1179)
Q Consensus 1041 ~~~------------~h~~~V~~l~~spdg~-~l~sg 1064 (1179)
.+. .|..-.+.+++.|++. ++++|
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 432 2455678899999874 45554
No 450
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=90.34 E-value=19 Score=42.29 Aligned_cols=94 Identities=14% Similarity=0.076 Sum_probs=42.8
Q ss_pred CCCEEEEEeC-CCcEEEEcCCCC--CceeEEEecc-ccccEEEEecCCCEEEEEeCC-----------CcEEEEECCCCe
Q 001039 850 DAGFFISGST-DCLVKIWDPSLR--GSELRATLKG-HTRTVRAINSDRGKVVSGSDD-----------QSVLVWDKQTSQ 914 (1179)
Q Consensus 850 d~~~Lasgs~-Dg~I~lWd~~~~--~~~~~~~l~~-h~~~v~~~s~d~~~l~sgs~d-----------g~I~iwd~~t~~ 914 (1179)
+++..+.|+. +..+.++|++.. .......+.. ..........++...+.|+.+ ..+..||..+.+
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~ 117 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS 117 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE
Confidence 3455554443 445667776421 1222222211 111122334566667777653 247778887765
Q ss_pred EEEEeecCCCcE--EEEEE-eCCCEEEEEEcC
Q 001039 915 LLEELKGHDAQV--SCVRM-LSGERVLTASHD 943 (1179)
Q Consensus 915 ~~~~~~~h~~~V--~~l~~-s~~~~l~sgs~d 943 (1179)
-...-....... .+... .++..++.|+.+
T Consensus 118 W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 118 WQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred EEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 433211111111 12222 466677777754
No 451
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=89.99 E-value=18 Score=39.84 Aligned_cols=151 Identities=11% Similarity=0.036 Sum_probs=82.1
Q ss_pred CeEEEEE--cCCEEEEEe---CCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEE-cCCCCcc
Q 001039 1008 WIRSIRM--DRDTVITGS---DDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWE-NDDAGGI 1081 (1179)
Q Consensus 1008 ~I~sl~~--~~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd-~~~~~~~ 1081 (1179)
.+.+.++ +++.++... ....++++. .+....... ....++.-.|++++...+....+...+++. ..++. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~-~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT-G 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCc-c
Confidence 4556666 444554443 333455554 333333322 233778889999987777767677777774 22222 2
Q ss_pred eEEE-eecccCceE--EEEecCCCEEEEEE---CCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEc
Q 001039 1082 KCVK-NVTIHSSAI--LSINAGDHWLGIGA---ADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASD 1155 (1179)
Q Consensus 1082 ~~~~-~~~~h~~~i--~sis~dg~~lasgs---~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fs 1155 (1179)
.... ........| +.+|+||..+|.-. .++.|.+--+.... .|.....-............+++++|.
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~------~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDG------DGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCC------CCCcceeccceEecccccCcceeeeec
Confidence 2211 111111155 45599999888765 35778777664321 220010011222222345679999999
Q ss_pred CCCCEEEEEeCCC
Q 001039 1156 LERKRICSGGRNG 1168 (1179)
Q Consensus 1156 pdg~~Lasgs~Dg 1168 (1179)
+++.+++.+...+
T Consensus 175 ~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 175 DDSTLVVLGRSAG 187 (253)
T ss_pred CCCEEEEEeCCCC
Confidence 9998877765444
No 452
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.83 E-value=16 Score=42.95 Aligned_cols=55 Identities=13% Similarity=0.196 Sum_probs=28.2
Q ss_pred EeCCCEEEEEEcC-----------CeEEEEeCCCCeEEEEeccCCCcEE-EEEEc-CCCCEEEEEeCC
Q 001039 931 MLSGERVLTASHD-----------GTVKMWDVRTDTCVATVGRCSSAVL-CMEYD-DSTGILAAGGRD 985 (1179)
Q Consensus 931 ~s~~~~l~sgs~d-----------g~I~iwd~~~~~~~~~~~~~~~~v~-~l~~s-p~~~~l~sgs~d 985 (1179)
..++..++.|+.+ ..+..||..+.+....-........ ..+.. -++++.+.|+.+
T Consensus 82 ~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 82 FIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred EECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 3356666777653 2477888877654432211111111 11222 467777777754
No 453
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=88.97 E-value=6 Score=47.18 Aligned_cols=148 Identities=9% Similarity=0.109 Sum_probs=81.7
Q ss_pred CCeEEEEE-cCCEEEEEe---CCCcEEEEEccCCeeeEEeecCCcCEEEEEEecC----CCEEEEEeCCCcEEEEEcCCC
Q 001039 1007 KWIRSIRM-DRDTVITGS---DDWTARMWSISRGTCDAVLACHAGPVQCVEYSSS----DRGIITGSSDGLLRFWENDDA 1078 (1179)
Q Consensus 1007 ~~I~sl~~-~~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spd----g~~l~sgs~Dg~I~iwd~~~~ 1078 (1179)
.++..++| ||+.++-.. .+|.+++=| .+.+ +.-..|.+++|.|- ...+.+......|.+|-+...
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 47788888 666444332 233333322 1222 23346889999885 334666667788999988632
Q ss_pred --CcceEEEeeccc---CceE----EEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccE
Q 001039 1079 --GGIKCVKNVTIH---SSAI----LSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVV 1149 (1179)
Q Consensus 1079 --~~~~~~~~~~~h---~~~i----~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V 1149 (1179)
+..+.+..-..+ .-++ .-++|....|++-.....-.++++.. ++ ..+.......+.|
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~--------d~------srVkaDi~~~G~I 158 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHC--------DS------SRVKADIKTSGLI 158 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeee--------CC------ceEEEeccCCceE
Confidence 111222111111 1111 23367777777766554444555432 11 1111122455779
Q ss_pred EEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 001039 1150 RCIASDLERKRICSGG-RNGLLRLWEA 1175 (1179)
Q Consensus 1150 ~~v~fspdg~~Lasgs-~Dg~I~vWdv 1175 (1179)
.|.+|.+||++|+.+- ..=.-++||-
T Consensus 159 hCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 159 HCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred EEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 9999999999988763 3335678874
No 454
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.78 E-value=4.5 Score=51.52 Aligned_cols=113 Identities=8% Similarity=-0.000 Sum_probs=73.8
Q ss_pred CcEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCceeE-----Eee------cCCCCeEEEEEcCC---EEEEEeCCCcE
Q 001039 965 SAVLCMEYDDSTGILAAGG--RDAVANIWDIRAGRQMH-----KFL------GHTKWIRSIRMDRD---TVITGSDDWTA 1028 (1179)
Q Consensus 965 ~~v~~l~~sp~~~~l~sgs--~dg~I~iwD~~~~~~~~-----~~~------~~~~~I~sl~~~~~---~l~sgs~dg~I 1028 (1179)
..+..+...+|+...++.. .+-.|..||+++-..-. -+. .......++.|++. ..++...|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 3556666677766555443 33378999997632211 111 12223456677665 67778889999
Q ss_pred EEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1029 RMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1029 ~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
++..+........--.-....++++|+|.|+.++.|...|++.-|...-
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 9987654332222222456789999999999999999999998886543
No 455
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=88.73 E-value=62 Score=38.89 Aligned_cols=302 Identities=13% Similarity=0.094 Sum_probs=143.0
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCceeEEEeccc-cccEEEEe-cCCCEEEEEeCCCcEEEEECCCCeEEEEe-ecCCCcEE
Q 001039 851 AGFFISGSTDCLVKIWDPSLRGSELRATLKGH-TRTVRAIN-SDRGKVVSGSDDQSVLVWDKQTSQLLEEL-KGHDAQVS 927 (1179)
Q Consensus 851 ~~~Lasgs~Dg~I~lWd~~~~~~~~~~~l~~h-~~~v~~~s-~d~~~l~sgs~dg~I~iwd~~t~~~~~~~-~~h~~~V~ 927 (1179)
...+..|+.|| +..+|.. ..+..+.-... ..+|.++. .-+..+..|+.+| +.+.+....+...-. .-..+.|.
T Consensus 175 ~g~lWvgT~dG-L~~fd~~--~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~ 250 (671)
T COG3292 175 NGRLWVGTPDG-LSYFDAG--RGKALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEGWRASNWGPMLPSGNIL 250 (671)
T ss_pred cCcEEEecCCc-ceEEccc--cceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhhccccccCCCCcchhee
Confidence 34677788888 5556633 33333322222 24555543 3356778888777 666665542211111 11233344
Q ss_pred EEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC
Q 001039 928 CVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRC--SSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH 1005 (1179)
Q Consensus 928 ~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~ 1005 (1179)
.+.-.....+..|+.+|..+.--.+.+-.....+.+ -+.|.++..+.+|+ +-+++.+|.+++-+- .......+...
T Consensus 251 ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~a-~w~~ma~in~~ 328 (671)
T COG3292 251 LLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLTA-DWKRMAVINDS 328 (671)
T ss_pred eeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEecc-hhhheeeeecC
Confidence 443333456777777765544333333222222222 34567777777777 556666666655432 22222222222
Q ss_pred CCCeE-EEEEc----CCEEEEEeCCCcEEEEEccCCeeeEEee-cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCC
Q 001039 1006 TKWIR-SIRMD----RDTVITGSDDWTARMWSISRGTCDAVLA-CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAG 1079 (1179)
Q Consensus 1006 ~~~I~-sl~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~ 1079 (1179)
.+.+. ..+.. ...+--...-|.+.+-+-.+|..+.... .....|+.+++..+| .+..|+...-+..|+.++.
T Consensus 329 dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~- 406 (671)
T COG3292 329 DGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRG-RLWLGSMQNGLSRLDNKNE- 406 (671)
T ss_pred CCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCC-cEEEEecccchhhhccCCc-
Confidence 22111 11111 1122222233344444555555544432 223557777777644 4556666544666766551
Q ss_pred cceEEEeec-ccCceEEEE--ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcC
Q 001039 1080 GIKCVKNVT-IHSSAILSI--NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDL 1156 (1179)
Q Consensus 1080 ~~~~~~~~~-~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fsp 1156 (1179)
...+.... ...+.|.++ .++++ +..|+.+|.++. +.+..+......-+ ........|..+...|
T Consensus 407 -~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~-~pe~~~v~n~ln~~----------~~~l~~s~~~~lg~~~ 473 (671)
T COG3292 407 -WAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-DPESGRVLNLLNPG----------SHGLDGSRVEQLGLGP 473 (671)
T ss_pred -ccccccccCCcccceeeeeecCCCC-EEEeccCCeEec-Cccccchhcccccc----------cCcCCcchhhhhccCC
Confidence 11221111 234556666 56777 788888887654 32221111110001 1112233477788888
Q ss_pred CCCE-EEEEeCCCcEEEEECC
Q 001039 1157 ERKR-ICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1157 dg~~-Lasgs~Dg~I~vWdv~ 1176 (1179)
+|++ +++| +| |..|+.+
T Consensus 474 ~g~Lw~a~g--~g-va~~~sq 491 (671)
T COG3292 474 DGRLWLAAG--SG-VAAWESQ 491 (671)
T ss_pred CCceEEEec--ce-eeeeccc
Confidence 8875 3333 33 4556543
No 456
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.54 E-value=12 Score=43.58 Aligned_cols=143 Identities=13% Similarity=0.122 Sum_probs=89.6
Q ss_pred CCCCEEEE-EeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCC-------EEEEEeCCCcEEEEECCC-CeEEEEe
Q 001039 849 EDAGFFIS-GSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRG-------KVVSGSDDQSVLVWDKQT-SQLLEEL 919 (1179)
Q Consensus 849 ~d~~~Las-gs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~-------~l~sgs~dg~I~iwd~~t-~~~~~~~ 919 (1179)
.|..+|.. |+....++--|++ .++.+....-|...+..+.|+.+ .-+.|-.+..|.-.|.+- |..+...
T Consensus 477 ~dssli~~dg~~~~kLykmDIE--rGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIE--RGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CCcceEEecCCCcccceeeecc--cceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 44555443 4444455555544 66777777778777776655432 234455555555556542 3222221
Q ss_pred e----cCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 001039 920 K----GHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIR 994 (1179)
Q Consensus 920 ~----~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~ 994 (1179)
. .......+..-..+.++++||..|.|++||--.-.....+.+....|..+..+.+|+++++.+. ..+.+.|++
T Consensus 555 esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 1 1122333444446789999999999999996544444556677889999999999999988775 577787865
No 457
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=88.20 E-value=21 Score=42.56 Aligned_cols=259 Identities=17% Similarity=0.161 Sum_probs=124.8
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeecCC-CcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEe-ccCCCcEEEE
Q 001039 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHD-AQVSCVRMLSGERVLTASHDGTVKMWDVRTDTCVATV-GRCSSAVLCM 970 (1179)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~-~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~~~~v~~l 970 (1179)
.+.+..|+.|| +..+|..+++.++.-.... .+|..+...-...+.+|+.+| |.+.+.+..+..... .-....|..+
T Consensus 175 ~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~ll 252 (671)
T COG3292 175 NGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEGWRASNWGPMLPSGNILLL 252 (671)
T ss_pred cCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhhccccccCCCCcchheeee
Confidence 34677888887 6678888888776544433 556655555466788888776 566665542221111 1234456666
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecC--CCCeEEEEEcCC-EEEEEeCCCcEEEEEccCCeeeEEeecCCc
Q 001039 971 EYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGH--TKWIRSIRMDRD-TVITGSDDWTARMWSISRGTCDAVLACHAG 1047 (1179)
Q Consensus 971 ~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~--~~~I~sl~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~ 1047 (1179)
.-+.+|. +-.|+.+|..+.---+.+-.+...+.| .+.|.++..+.+ .+-+++.+|.+++-+.. ......+...++
T Consensus 253 ~qD~qG~-lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~-w~~ma~in~~dG 330 (671)
T COG3292 253 VQDAQGE-LWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTAD-WKRMAVINDSDG 330 (671)
T ss_pred ecccCCC-EEEeecccceeEecCCCCccccccccCCccccccceeeccCCCEeeeccCceEEEecch-hhheeeeecCCC
Confidence 6555655 556777665543333332222222222 234555555443 67777777766654421 122112221111
Q ss_pred CE-EEEEEec--CCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEeCCCCCcC
Q 001039 1048 PV-QCVEYSS--SDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLG 1124 (1179)
Q Consensus 1048 ~V-~~l~~sp--dg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~ 1124 (1179)
.+ ..++..| .+..+--..+-|.+.+-+-.++.....+...++......++.. +..+..|+..+-+..|+..+.
T Consensus 331 ~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~--- 406 (671)
T COG3292 331 GVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNE--- 406 (671)
T ss_pred chhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhcc-CCcEEEEecccchhhhccCCc---
Confidence 11 1111111 1112222222223333333333222333333333222233333 344555555544555655420
Q ss_pred cccCCCCccccceeeeec-CCCcccEEEEEEcCCCCEEEEEeCCCcEE
Q 001039 1125 GFSGTGSKMSGWQLYRTP-QKTVAVVRCIASDLERKRICSGGRNGLLR 1171 (1179)
Q Consensus 1125 ~~~~~g~~~~~~~~~~~~-~~h~~~V~~v~fspdg~~Lasgs~Dg~I~ 1171 (1179)
|..+... ....+.|..+.=.||++ |..|+.+|.++
T Consensus 407 -----------~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk 442 (671)
T COG3292 407 -----------WAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVK 442 (671)
T ss_pred -----------ccccccccCCcccceeeeeecCCCC-EEEeccCCeEe
Confidence 1111111 12346788888889988 77788888665
No 458
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=87.29 E-value=13 Score=46.03 Aligned_cols=102 Identities=13% Similarity=0.198 Sum_probs=69.0
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCeEEEEee-cCCCcEEEEEEe---CCCEEEEEEcCCeEEEEeCC-----CC----eE
Q 001039 890 NSDRGKVVSGSDDQSVLVWDKQTSQLLEELK-GHDAQVSCVRML---SGERVLTASHDGTVKMWDVR-----TD----TC 956 (1179)
Q Consensus 890 s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~-~h~~~V~~l~~s---~~~~l~sgs~dg~I~iwd~~-----~~----~~ 956 (1179)
+.-++..++-+...++.|||...+.....-. ...+.|.++.|. +++.+++.|..+.|.++.-. +. ..
T Consensus 38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~ 117 (631)
T PF12234_consen 38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAP 117 (631)
T ss_pred cccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccce
Confidence 3444554555556689999999887544322 457889999997 68888999999999998532 11 12
Q ss_pred EEEe--ccC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 001039 957 VATV--GRC-SSAVLCMEYDDSTGILAAGGRDAVANIWDI 993 (1179)
Q Consensus 957 ~~~~--~~~-~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~ 993 (1179)
++.+ ..+ ..+|.+..|.++|..++.++ +.+.++|-
T Consensus 118 i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 118 IRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred eEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 2322 233 36788999999997665443 57888874
No 459
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=86.82 E-value=57 Score=36.32 Aligned_cols=196 Identities=10% Similarity=0.088 Sum_probs=108.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCC------CCc-eeEEeec-----CCCCeEEEEEcC--------------CEE
Q 001039 966 AVLCMEYDDSTGILAAGGRDAVANIWDIR------AGR-QMHKFLG-----HTKWIRSIRMDR--------------DTV 1019 (1179)
Q Consensus 966 ~v~~l~~sp~~~~l~sgs~dg~I~iwD~~------~~~-~~~~~~~-----~~~~I~sl~~~~--------------~~l 1019 (1179)
.-+.++++|.+.+.++....+...+||.. ..+ .+-.+.. .....+.+.|++ ..+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35789999999888888888899999986 122 2233331 123455666532 147
Q ss_pred EEEeCCCcEEEEEccCCee-----eEEee-cCCcCE-EEEEEecC--CCEEEEEe-CCCcEEEEEcCCCCcceEEEeecc
Q 001039 1020 ITGSDDWTARMWSISRGTC-----DAVLA-CHAGPV-QCVEYSSS--DRGIITGS-SDGLLRFWENDDAGGIKCVKNVTI 1089 (1179)
Q Consensus 1020 ~sgs~dg~I~iwd~~~~~~-----~~~~~-~h~~~V-~~l~~spd--g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~ 1089 (1179)
+.+++||+|.-|.-.-+.. ...+. ...+.| ..+++... +.+|..+. ..++|.++|-.-.. ...-..+..
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~-~~~~g~F~D 182 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP-PPLPGSFID 182 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc-ccCCCCccC
Confidence 8889999999998533222 12222 112333 34555433 55665554 67899999865421 000000000
Q ss_pred cC-----c--eE----------EEE-ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeec--CCCcccE
Q 001039 1090 HS-----S--AI----------LSI-NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTP--QKTVAVV 1149 (1179)
Q Consensus 1090 h~-----~--~i----------~si-s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~--~~h~~~V 1149 (1179)
.. . .| ++. .++++.=+.|..-|.|-+||.... +++++ .+.-..-
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~----------------l~~r~as~g~LNaP 246 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ----------------LLRRVASSGRLNAP 246 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc----------------EEEEeccCCcccCC
Confidence 00 0 01 111 122223333445578899988643 22222 2333445
Q ss_pred EEEEEcC------CCCEEEEEeCCCcEEEEECCCC
Q 001039 1150 RCIASDL------ERKRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1150 ~~v~fsp------dg~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
+.|+..| .|.+|+---.||+|..+|..+|
T Consensus 247 WG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 247 WGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred ceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence 6666654 4667776667999999998876
No 460
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.59 E-value=80 Score=40.25 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=48.1
Q ss_pred cEEEEEEe-CCCEEEEEEcCCeEEEEeCC---------CCeE---EEEe--------ccCCCcEEEEEEcCC---CCEEE
Q 001039 925 QVSCVRML-SGERVLTASHDGTVKMWDVR---------TDTC---VATV--------GRCSSAVLCMEYDDS---TGILA 980 (1179)
Q Consensus 925 ~V~~l~~s-~~~~l~sgs~dg~I~iwd~~---------~~~~---~~~~--------~~~~~~v~~l~~sp~---~~~l~ 980 (1179)
.|..+..+ +|..++..|..|.+.+.=.+ .|+. .+++ ......|..+.|+|. +..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 46677777 67778877776654432221 1111 1111 133457899999995 57899
Q ss_pred EEeCCCeEEEEeCCCCc
Q 001039 981 AGGRDAVANIWDIRAGR 997 (1179)
Q Consensus 981 sgs~dg~I~iwD~~~~~ 997 (1179)
+-+.|+.+++||+....
T Consensus 166 vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEecCCEEEEEecCCCC
Confidence 99999999999997643
No 461
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=86.02 E-value=6.5 Score=45.76 Aligned_cols=139 Identities=14% Similarity=0.148 Sum_probs=83.6
Q ss_pred EEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCC--------CEEEEEeCCCcEEEEEcCCCCcceEE---Ee
Q 001039 1018 TVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSD--------RGIITGSSDGLLRFWENDDAGGIKCV---KN 1086 (1179)
Q Consensus 1018 ~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg--------~~l~sgs~Dg~I~iwd~~~~~~~~~~---~~ 1086 (1179)
.+..|+....++--|+..|+.+..+..|... -+.|.|+. +.|+ |-++..|.-.|.+-.+..-.+ +.
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~esKd 558 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVESKD 558 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeeeehh
Confidence 4455666677888899999999998877765 46666643 3344 444444544454442211111 11
Q ss_pred ecccCceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeC
Q 001039 1087 VTIHSSAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGR 1166 (1179)
Q Consensus 1087 ~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~ 1166 (1179)
..+...--........++|+||..|.|++||.-+. .....+.+-...|..+..+.+|+++++.+.
T Consensus 559 Y~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~---------------rAKtalP~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 559 YKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGK---------------RAKTALPGLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred ccccccccccccccCceEEEecCCCceeeehhhcc---------------hhhhcCcccccceeeeEeecCCcEEEEeec
Confidence 11111111222456789999999999999997532 122234455677889999999998766553
Q ss_pred CCcEEEEEC
Q 001039 1167 NGLLRLWEA 1175 (1179)
Q Consensus 1167 Dg~I~vWdv 1175 (1179)
. ++.+-|+
T Consensus 624 ~-yllL~d~ 631 (776)
T COG5167 624 N-YLLLTDV 631 (776)
T ss_pred c-eEEEEec
Confidence 3 4444444
No 462
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=85.53 E-value=62 Score=35.59 Aligned_cols=142 Identities=15% Similarity=0.090 Sum_probs=82.0
Q ss_pred cEEEEEEe-CCCEEEEEE---cCCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCcee
Q 001039 925 QVSCVRML-SGERVLTAS---HDGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWD-IRAGRQM 999 (1179)
Q Consensus 925 ~V~~l~~s-~~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD-~~~~~~~ 999 (1179)
.+...+.+ +++.++... ....+.++. .+....... ....+..-.|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 57778888 666666554 233444544 333333321 233678889999988777766666666663 3333322
Q ss_pred E-Eeec--CCCCeEEEEEcCC--EEEEE---eCCCcEEEEEcc---CC------eeeEEeecCCcCEEEEEEecCCCEEE
Q 001039 1000 H-KFLG--HTKWIRSIRMDRD--TVITG---SDDWTARMWSIS---RG------TCDAVLACHAGPVQCVEYSSSDRGII 1062 (1179)
Q Consensus 1000 ~-~~~~--~~~~I~sl~~~~~--~l~sg---s~dg~I~iwd~~---~~------~~~~~~~~h~~~V~~l~~spdg~~l~ 1062 (1179)
. .... ....|.++.++++ .++.. ..++.|.+--+. .+ ............++.+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 1 1111 1228999999665 44433 345777776543 22 11122223356889999999998877
Q ss_pred EEeCCCc
Q 001039 1063 TGSSDGL 1069 (1179)
Q Consensus 1063 sgs~Dg~ 1069 (1179)
.+...+.
T Consensus 182 ~~~~~~~ 188 (253)
T PF10647_consen 182 LGRSAGG 188 (253)
T ss_pred EeCCCCC
Confidence 7765443
No 463
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=85.18 E-value=2.4 Score=32.26 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=26.9
Q ss_pred ccEEEEEEcCCC---CEEEEEeCCCcEEEEECCCC
Q 001039 1147 AVVRCIASDLER---KRICSGGRNGLLRLWEATIN 1178 (1179)
Q Consensus 1147 ~~V~~v~fspdg---~~Lasgs~Dg~I~vWdv~tg 1178 (1179)
+.|+++.|||+. .+|+.+-.-|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 48998888999999999854
No 464
>PF09804 DUF2347: Uncharacterized conserved protein (DUF2347); InterPro: IPR018626 Members of this family of hypothetical proteins have no known function.
Probab=85.12 E-value=19 Score=40.05 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=29.6
Q ss_pred cchHHHhccCChhhHHHHHHHHhccccEEEEeCCc
Q 001039 205 ISFQPLVQLLDVDNLITLFTAVLLERRILLRSNKY 239 (1179)
Q Consensus 205 ~~~~~l~~~l~~~~~~~l~~~~L~E~~il~~s~~~ 239 (1179)
.++..+++.||+ .|..|+-++|+-+||||++.-+
T Consensus 162 ~~Lp~~l~~fGP-lIF~L~K~aLLRKRILi~~~~p 195 (280)
T PF09804_consen 162 GSLPQLLDTFGP-LIFPLWKAALLRKRILIFSPPP 195 (280)
T ss_pred HHHHHHHHHhCc-HHHHHHHHHhhcCcEEEecCCC
Confidence 568899999998 5889999999999999996543
No 465
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.09 E-value=23 Score=44.26 Aligned_cols=147 Identities=14% Similarity=0.217 Sum_probs=90.9
Q ss_pred ccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEE------Eee----------------cCCCcEEEEEEe---CCCEEE
Q 001039 884 RTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLE------ELK----------------GHDAQVSCVRML---SGERVL 938 (1179)
Q Consensus 884 ~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~------~~~----------------~h~~~V~~l~~s---~~~~l~ 938 (1179)
...++++. .++++++. .+.|.||+.+...... .+. .....|+.|... +...|+
T Consensus 41 NNLtalsq-~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl 118 (717)
T PF08728_consen 41 NNLTALSQ-RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLL 118 (717)
T ss_pred cceeEEec-CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEE
Confidence 44455555 66666655 5789999875432210 110 011235555443 466788
Q ss_pred EEEcCCeEEEEeCCC-------C----e---------EEEEeccCCCcEEEEEEc--CCCCEEEEEeCCCeEEEEeCCCC
Q 001039 939 TASHDGTVKMWDVRT-------D----T---------CVATVGRCSSAVLCMEYD--DSTGILAAGGRDAVANIWDIRAG 996 (1179)
Q Consensus 939 sgs~dg~I~iwd~~~-------~----~---------~~~~~~~~~~~v~~l~~s--p~~~~l~sgs~dg~I~iwD~~~~ 996 (1179)
.|.+||.|.+|.+++ . + +...+ .....+++++++ ...++||+++....|.||-....
T Consensus 119 ~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~ 197 (717)
T PF08728_consen 119 LCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALV 197 (717)
T ss_pred EEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEEecc
Confidence 999999999997631 0 0 01111 234578899998 78888999888888888765432
Q ss_pred --ceeE-EeecCCCCeEEEEE-----cCC---EEEEEeCCCcEEEEEc
Q 001039 997 --RQMH-KFLGHTKWIRSIRM-----DRD---TVITGSDDWTARMWSI 1033 (1179)
Q Consensus 997 --~~~~-~~~~~~~~I~sl~~-----~~~---~l~sgs~dg~I~iwd~ 1033 (1179)
+... .-..+...|-+++| ++. .+++++-.|.+.+|++
T Consensus 198 ~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 198 DERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1111 11135567888888 223 7888999999999887
No 466
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=84.84 E-value=0.51 Score=57.86 Aligned_cols=160 Identities=18% Similarity=0.191 Sum_probs=95.1
Q ss_pred cceEEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceecccc
Q 001039 769 RSWVQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVG 846 (1179)
Q Consensus 769 ~~i~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~ 846 (1179)
+-|.+|.|-+...++..+-.+ |++-..++.. ...+++|...++.++|. .+.+..+.+
T Consensus 184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~--------------------~~l~rsHs~~~~d~a~~-~~g~~~l~~ 242 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL--------------------RSLFRSHSQRVTDMAFF-AEGVLKLAS 242 (1283)
T ss_pred ceeeecccccccceeeeccCCCceeEeeechHH--------------------HHHHHhcCCCcccHHHH-hhchhhhee
Confidence 345566666666666555444 6654444322 24577899999998875 344455667
Q ss_pred ccCCCCEEEEEeCCCcEEEEcCCCCCc---eeEEEecccc-ccEEEEecC---------C--CEEEEEe-CCCcEEEEEC
Q 001039 847 DREDAGFFISGSTDCLVKIWDPSLRGS---ELRATLKGHT-RTVRAINSD---------R--GKVVSGS-DDQSVLVWDK 910 (1179)
Q Consensus 847 ~s~d~~~Lasgs~Dg~I~lWd~~~~~~---~~~~~l~~h~-~~v~~~s~d---------~--~~l~sgs-~dg~I~iwd~ 910 (1179)
.||||+.+|+++.||.++.|.+...+. .+....+.|+ .+-.|+..+ + .++++++ .+..+++|..
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 899999999999999999998764332 3344556666 333343211 1 1244443 3567889987
Q ss_pred CCCeEEEEeecCCCcEEEEEEeCCC------------EEEEEEcCCeEEEEeC
Q 001039 911 QTSQLLEELKGHDAQVSCVRMLSGE------------RVLTASHDGTVKMWDV 951 (1179)
Q Consensus 911 ~t~~~~~~~~~h~~~V~~l~~s~~~------------~l~sgs~dg~I~iwd~ 951 (1179)
...+|. ++..-+.|..+.-+++. .++.-+.+++|.+|--
T Consensus 323 a~w~Cl--l~~~~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn 373 (1283)
T KOG1916|consen 323 APWQCL--LDKLIDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN 373 (1283)
T ss_pred cchhhh--hhhcccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence 766665 22122233333322221 2344566888888853
No 467
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=84.83 E-value=15 Score=44.56 Aligned_cols=68 Identities=10% Similarity=0.181 Sum_probs=40.2
Q ss_pred cCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcEEEEe
Q 001039 1044 CHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSMSLFH 1117 (1179)
Q Consensus 1044 ~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I~iwd 1117 (1179)
.|.+.|--+..+..+..++--...-.+.++|+.+.. ...+. .-..-+.+-|....+++-+.| ++.||-
T Consensus 335 nh~~~vdwielne~~~kllfrdkk~kl~l~di~s~q-ksmil----nfcsymqwvp~sdvivaqn~d-nl~iwy 402 (1636)
T KOG3616|consen 335 NHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQ-KSMIL----NFCSYMQWVPGSDVIVAQNGD-NLCIWY 402 (1636)
T ss_pred cccccccceeccchhhhhhcccccceeEEEEcccch-HHHHH----HHhhhheeccCcceEEecCCC-ceEEEe
Confidence 377777777777777667766666678888887622 11111 111123344667777766555 577774
No 468
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.80 E-value=23 Score=45.05 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=21.9
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 001039 963 CSSAVLCMEYDDSTGILAAGGRDAVANI 990 (1179)
Q Consensus 963 ~~~~v~~l~~sp~~~~l~sgs~dg~I~i 990 (1179)
..-.|..+..+++|.+++..|..|...+
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 3457899999999999999887664443
No 469
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=84.34 E-value=74 Score=35.45 Aligned_cols=202 Identities=11% Similarity=0.132 Sum_probs=112.3
Q ss_pred eEEEEeecccceeccccccCCCCEEEEEeCCCcEEEEcCC-----CCCceeEEEecc---------ccccEE----EE--
Q 001039 830 ITALHCVTKREVWDLVGDREDAGFFISGSTDCLVKIWDPS-----LRGSELRATLKG---------HTRTVR----AI-- 889 (1179)
Q Consensus 830 V~~v~~s~~~~~~~~~~~s~d~~~Lasgs~Dg~I~lWd~~-----~~~~~~~~~l~~---------h~~~v~----~~-- 889 (1179)
-+.|+++ |.+.+-++....+...+||.. .....++.++.. .++.|. .|
T Consensus 25 ~WGia~~------------p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~v 92 (336)
T TIGR03118 25 AWGLSYR------------PGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVV 92 (336)
T ss_pred cceeEec------------CCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEE
Confidence 3677776 677777777778899999975 112223333331 111121 11
Q ss_pred ecC----CCEEEEEeCCCcEEEEECCCCeE-----EEEee-cCCCcE-EEEEEe---CCCEEEEE-EcCCeEEEEeCCCC
Q 001039 890 NSD----RGKVVSGSDDQSVLVWDKQTSQL-----LEELK-GHDAQV-SCVRML---SGERVLTA-SHDGTVKMWDVRTD 954 (1179)
Q Consensus 890 s~d----~~~l~sgs~dg~I~iwd~~t~~~-----~~~~~-~h~~~V-~~l~~s---~~~~l~sg-s~dg~I~iwd~~~~ 954 (1179)
+.. ...++.+++||+|.-|...-+.. ...+. +....| ..+++. .++.|+.+ -..++|.++|-.-.
T Consensus 93 t~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~ 172 (336)
T TIGR03118 93 SGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR 172 (336)
T ss_pred cCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence 221 23478899999999998533222 12222 112333 334443 24455444 46789999985432
Q ss_pred eEEE--EeccC----------------CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee--cCCCCeEEEEE
Q 001039 955 TCVA--TVGRC----------------SSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFL--GHTKWIRSIRM 1014 (1179)
Q Consensus 955 ~~~~--~~~~~----------------~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~--~~~~~I~sl~~ 1014 (1179)
+... .+... .--|+-..-.++++.=+.|..-|.|-++|.. |+.++++. +.-..-+.++.
T Consensus 173 ~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~ 251 (336)
T TIGR03118 173 PPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAI 251 (336)
T ss_pred cccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeee
Confidence 2110 01000 0011112223333333444556789999975 67777663 22334455554
Q ss_pred --------cCCEEEEEeCCCcEEEEEccCCeeeEEeec
Q 001039 1015 --------DRDTVITGSDDWTARMWSISRGTCDAVLAC 1044 (1179)
Q Consensus 1015 --------~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 1044 (1179)
++++|+---.||+|..+|..+++.+..+..
T Consensus 252 APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 252 APESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred ChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 566888888899999999999988777764
No 470
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.25 E-value=19 Score=46.09 Aligned_cols=228 Identities=12% Similarity=0.082 Sum_probs=112.2
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeEEE---E------e--ecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCeE
Q 001039 888 AINSDRGKVVSGSDDQSVLVWDKQTSQLLE---E------L--KGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDTC 956 (1179)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~---~------~--~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~~ 956 (1179)
|+...|+.+..|+.+|.+.+|.+.....-. . + .-+..+|..+...+..-++-.-.|+.|.++++.+-+.
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l~dsqi~~~~l~~~~~ 100 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLILSDSQIAVHKLPELEP 100 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchheecCCcceeeecCcccc
Confidence 677889999999999999999886542111 0 0 0123555555555444455556677888888766554
Q ss_pred EEEeccCCCcEEEEEE--cC-C-C--CEEEEEe-C-CCeEEEEeCCCCceeEEeecCCCCeEEEEEcCCEEEEEeCCCcE
Q 001039 957 VATVGRCSSAVLCMEY--DD-S-T--GILAAGG-R-DAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRDTVITGSDDWTA 1028 (1179)
Q Consensus 957 ~~~~~~~~~~v~~l~~--sp-~-~--~~l~sgs-~-dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I 1028 (1179)
........ .+...++ .+ + | .+.++.+ . ......|+-+.+..+..-.+-.....+.+|.+..+.+|-.+...
T Consensus 101 ~~~~~~~K-g~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~c~~~~~~~~ 179 (877)
T KOG2063|consen 101 VPSGTRLK-GASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAWCGHIVCLGLKKSYY 179 (877)
T ss_pred cccccccc-cceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhcccceeEEEeecceeE
Confidence 22111111 1111111 11 1 1 2222222 2 22334555555544444334445566667777777776665555
Q ss_pred EEEEccCCeeeEEee-cC--CcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEE
Q 001039 1029 RMWSISRGTCDAVLA-CH--AGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLG 1105 (1179)
Q Consensus 1029 ~iwd~~~~~~~~~~~-~h--~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~la 1105 (1179)
.+|...++.....+. +. ...-..+.-..++..++.| .|+...+-|.......+. ++. -.....++..+..+++
T Consensus 180 ii~~~~~~~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~-kd~~gv~vd~~G~~~~~~--~l~-ws~~P~~v~~~~PYlI 255 (877)
T KOG2063|consen 180 IINNTSKGVGPNLFPSSMDNESRKPLIKSLSDQSELLLG-KDNIGVVVDLNGIIAQRG--TLV-WSEVPLSVVVESPYLI 255 (877)
T ss_pred EEecCCCccccceeeeccccccCCCeEEEecCCceEEEc-cCceEEEEecCCcccCCC--ceE-ecccchhhcccCceEE
Confidence 555544442111111 10 1111223334455455555 666666767544110000 000 0111122334556666
Q ss_pred EEECCCcEEEEeCCCC
Q 001039 1106 IGAADNSMSLFHRPQE 1121 (1179)
Q Consensus 1106 sgs~Dg~I~iwd~~~~ 1121 (1179)
+-+ ++.|.||+..+.
T Consensus 256 a~~-~~~veI~s~~~~ 270 (877)
T KOG2063|consen 256 ALL-DRSVEIRSKLDG 270 (877)
T ss_pred EEc-cccEEEEeccCH
Confidence 554 459999998744
No 471
>PRK05560 DNA gyrase subunit A; Validated
Probab=84.11 E-value=1.5e+02 Score=38.67 Aligned_cols=187 Identities=10% Similarity=0.051 Sum_probs=97.5
Q ss_pred eCCCEEEEEEcCCeEEEEeC---CC------CeEEE---EeccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEeCCC--
Q 001039 932 LSGERVLTASHDGTVKMWDV---RT------DTCVA---TVGRCSSAVLCMEYDD--STGILAAGGRDAVANIWDIRA-- 995 (1179)
Q Consensus 932 s~~~~l~sgs~dg~I~iwd~---~~------~~~~~---~~~~~~~~v~~l~~sp--~~~~l~sgs~dg~I~iwD~~~-- 995 (1179)
+..+.++..+..|.+..... .. |..+. .+.....-+.++.+.. +...++..+.+|.++-.++..
T Consensus 546 ~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~ 625 (805)
T PRK05560 546 STHDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFS 625 (805)
T ss_pred cCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhh
Confidence 45666777777787665543 22 22221 1222233345555552 667888999999988776543
Q ss_pred -----CceeEEeecCCCCeEEEEE-cCCEEEEEeCCCcEEEEEccC---------CeeeEEeecCCcCEEEE-EEecCCC
Q 001039 996 -----GRQMHKFLGHTKWIRSIRM-DRDTVITGSDDWTARMWSISR---------GTCDAVLACHAGPVQCV-EYSSSDR 1059 (1179)
Q Consensus 996 -----~~~~~~~~~~~~~I~sl~~-~~~~l~sgs~dg~I~iwd~~~---------~~~~~~~~~h~~~V~~l-~~spdg~ 1059 (1179)
|.....+.....-+..... +.+.++..+..|.+..+.... |.....+.. ...|.++ .+.+++.
T Consensus 626 ~~~r~G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~ 704 (805)
T PRK05560 626 NIRSNGIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQ 704 (805)
T ss_pred hcccCCceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCc
Confidence 2222333332222222222 334677777888777665432 222222322 2334443 4444444
Q ss_pred EEEEEeCCCcEEEEEcCCC------CcceEEEeecccCceEEEE--ecCCCEEEEEECCCcEEEEeCC
Q 001039 1060 GIITGSSDGLLRFWENDDA------GGIKCVKNVTIHSSAILSI--NAGDHWLGIGAADNSMSLFHRP 1119 (1179)
Q Consensus 1060 ~l~sgs~Dg~I~iwd~~~~------~~~~~~~~~~~h~~~i~si--s~dg~~lasgs~Dg~I~iwd~~ 1119 (1179)
+++..+..|.++...+..- +.......+......+..+ ..++..++..+.+|.+..++..
T Consensus 705 ~il~vTk~G~iKr~~l~e~~~~~R~~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~ 772 (805)
T PRK05560 705 EILTVTENGYGKRTPVSEYRLQGRGGKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVS 772 (805)
T ss_pred EEEEEEeCCeEEEEEHHHhhccCCCCCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHH
Confidence 7888889998887765421 1111222222222333333 2233456667778888777765
No 472
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=83.65 E-value=21 Score=44.12 Aligned_cols=118 Identities=12% Similarity=0.149 Sum_probs=71.4
Q ss_pred cCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEE----ecCCCEEEEEECCCcEEEEeCCCCC
Q 001039 1047 GPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSI----NAGDHWLGIGAADNSMSLFHRPQER 1122 (1179)
Q Consensus 1047 ~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~si----s~dg~~lasgs~Dg~I~iwd~~~~~ 1122 (1179)
...+-+.-|.-++..++.+....+.|||.+.+. ...-..+ .....|..+ .++|+.+.+.|-.+.|.++.-...
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~- 106 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV-LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY- 106 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcE-EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch-
Confidence 344445555556655555556679999998743 3322333 345566555 489999888888999999864321
Q ss_pred cCcccCCCCccccceeeeec--CCCc-ccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001039 1123 LGGFSGTGSKMSGWQLYRTP--QKTV-AVVRCIASDLERKRICSGGRNGLLRLWE 1174 (1179)
Q Consensus 1123 ~~~~~~~g~~~~~~~~~~~~--~~h~-~~V~~v~fspdg~~Lasgs~Dg~I~vWd 1174 (1179)
.+ + ...+.|..++.. ..|+ .+|.+..|.+||..++.+| ..+.|++
T Consensus 107 --dy--~-~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 107 --DY--T-NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred --hh--h-cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 11 1 122345554433 2333 5799999999998776554 2355543
No 473
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=82.03 E-value=37 Score=40.57 Aligned_cols=165 Identities=15% Similarity=0.216 Sum_probs=66.7
Q ss_pred EEecCCCEEEEEeCCCcEEEEECC-------CCeEEEEe-ecCCCcEEEEEEeCCCEEEEEEcCCeEEEEeCCCCe-EEE
Q 001039 888 AINSDRGKVVSGSDDQSVLVWDKQ-------TSQLLEEL-KGHDAQVSCVRMLSGERVLTASHDGTVKMWDVRTDT-CVA 958 (1179)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~-------t~~~~~~~-~~h~~~V~~l~~s~~~~l~sgs~dg~I~iwd~~~~~-~~~ 958 (1179)
.+.+.-++..... |..+.+|+.. ++.....+ .++...+.++ .++....|.|..|+--+.. .+.
T Consensus 32 gi~~e~g~Aw~~~-d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v-------~lv~p~~G~v~f~~~I~~~l~~~ 103 (422)
T PF08801_consen 32 GIFPEIGRAWIVV-DNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV-------GLVKPKTGRVVFWESISHLLVLA 103 (422)
T ss_dssp EEE-TTSEEEEEE-TTEEEEEE--SS--GG--EEEEE-----------SE-------EEEE-TT-EEEEES-TT-TT--E
T ss_pred EEEcccCEEEEEE-CCEEEEEeccCCCCCcCcccccceecCCCCCCCceE-------EEEEcCCCCEEecccchhhhhcC
Confidence 4556655555544 5689999983 34443333 3333333333 4566678999999753321 111
Q ss_pred Eec------------cCCCcEEE-EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEee--cCCCCeEEEEEcCCEEEEEe
Q 001039 959 TVG------------RCSSAVLC-MEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFL--GHTKWIRSIRMDRDTVITGS 1023 (1179)
Q Consensus 959 ~~~------------~~~~~v~~-l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~--~~~~~I~sl~~~~~~l~sgs 1023 (1179)
+.. .....+.. ....+.+ ++.+..+|.|.....+....+..+. ...+....+......++.+
T Consensus 104 t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~--~I~~ts~GRif~~~~~~~~g~~~l~y~~~~~~~~~i~~~~~~~~~~- 180 (422)
T PF08801_consen 104 TPSQISLLGVSYSELLSGELSTSLTNVEPSG--FIVSTSTGRIFFLGIRDSNGKYELSYQQLSGRCSKINHTSSSIFSS- 180 (422)
T ss_dssp EEE------------------EEEEEEETTT--EEEEETT--EEEEEE-TTS-EEEEE-TT-------------------
T ss_pred ccccccccccceeeecCCceEEECCCCceEE--EEEECCCCeEEEEeCCCCCCcEEEEEEcCcCCccccccccCceecc-
Confidence 110 11111222 2334444 5566677777776666533332221 1111110000000000000
Q ss_pred CCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1024 DDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1024 ~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
+ +.+ ....+..|.+++..+..+.+++.+.+|.|.+|++..
T Consensus 181 ----~----~p~------~~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 181 ----L----LPS------FSDPRPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -------------------------EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ----c----cCC------cccchhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 0 000 111234488999999999999999999999999986
No 474
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.95 E-value=15 Score=47.23 Aligned_cols=128 Identities=9% Similarity=-0.046 Sum_probs=79.7
Q ss_pred EecCCCEEEE--EeCCCcEEEEECCCCeEE-----EEee------cCCCcEEEEEEeC--CCEEEEEEcCCeEEEEeCCC
Q 001039 889 INSDRGKVVS--GSDDQSVLVWDKQTSQLL-----EELK------GHDAQVSCVRMLS--GERVLTASHDGTVKMWDVRT 953 (1179)
Q Consensus 889 ~s~d~~~l~s--gs~dg~I~iwd~~t~~~~-----~~~~------~h~~~V~~l~~s~--~~~l~sgs~dg~I~iwd~~~ 953 (1179)
+.+|+...++ .+.+-.|..+|+++-..- .-+. ....-..++.|++ ....+++..|+.|++..+..
T Consensus 108 ~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~ 187 (1405)
T KOG3630|consen 108 CFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQ 187 (1405)
T ss_pred eccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhh
Confidence 3566555443 334447888998653211 1111 1223345667763 45567788899988887654
Q ss_pred CeEEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeec----CCCCeEEEEEcCC
Q 001039 954 DTCVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLG----HTKWIRSIRMDRD 1017 (1179)
Q Consensus 954 ~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~----~~~~I~sl~~~~~ 1017 (1179)
......-.......++++|+|.|+.+++|-.+|++.-|-.. ++....+.+ ....|.++.|-+.
T Consensus 188 ~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 188 LAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred hhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecc
Confidence 33322222445678999999999999999999999888743 333333322 1368899999443
No 475
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.83 E-value=8.9 Score=49.92 Aligned_cols=151 Identities=12% Similarity=0.065 Sum_probs=82.3
Q ss_pred eCCCcEEEEEccCCeeeEEeecCCcCEEEEEE--------ecCCCEEEEEeCCCcEEEEEcCCCCcceEE------Eeec
Q 001039 1023 SDDWTARMWSISRGTCDAVLACHAGPVQCVEY--------SSSDRGIITGSSDGLLRFWENDDAGGIKCV------KNVT 1088 (1179)
Q Consensus 1023 s~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~--------spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~------~~~~ 1088 (1179)
+.|+.+.+|+.+++.....+.+-...|..+.. .|.=++++.-+.--.|.++-+......... ..+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 34777888888887766666666666665543 222334333333444555433321100000 1122
Q ss_pred ccCceEEEEe--cCCCEEEEEECCCcEEEEeCC----CC----CcCcccCCCCcc---ccceeeeecCCCcccEEEEEEc
Q 001039 1089 IHSSAILSIN--AGDHWLGIGAADNSMSLFHRP----QE----RLGGFSGTGSKM---SGWQLYRTPQKTVAVVRCIASD 1155 (1179)
Q Consensus 1089 ~h~~~i~sis--~dg~~lasgs~Dg~I~iwd~~----~~----~~~~~~~~g~~~---~~~~~~~~~~~h~~~V~~v~fs 1155 (1179)
.....|.++. .+|+.+.+| .|| .+|.+. .+ +...+..+++.+ -.+ ....+..+..+|..++..
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs-~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS-LLSVPGSSKDPIRQITID 251 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhh-hhcCCCCCCCcceeeEec
Confidence 2344556663 456666554 666 445432 11 111111111111 111 222233667899999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCC
Q 001039 1156 LERKRICSGGRNGLLRLWEATI 1177 (1179)
Q Consensus 1156 pdg~~Lasgs~Dg~I~vWdv~t 1177 (1179)
...+.+.+-+..|+|.+|++.+
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 9999999999999999999987
No 476
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.95 E-value=9.7 Score=40.90 Aligned_cols=69 Identities=12% Similarity=0.126 Sum_probs=49.4
Q ss_pred CeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEe-------e-------cCCcCEEEEEEecCCCEEEEEeCCCcEEEE
Q 001039 1008 WIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVL-------A-------CHAGPVQCVEYSSSDRGIITGSSDGLLRFW 1073 (1179)
Q Consensus 1008 ~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~-------~-------~h~~~V~~l~~spdg~~l~sgs~Dg~I~iw 1073 (1179)
++..+..+++++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ +|..+.|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y 92 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSY 92 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEe
Confidence 45556667778888888888888888877654321 1 2456788888888888777664 5788999
Q ss_pred EcCC
Q 001039 1074 ENDD 1077 (1179)
Q Consensus 1074 d~~~ 1077 (1179)
+.+-
T Consensus 93 ~~~L 96 (219)
T PF07569_consen 93 SPDL 96 (219)
T ss_pred cccc
Confidence 8765
No 477
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=80.82 E-value=1.5e+02 Score=36.40 Aligned_cols=221 Identities=12% Similarity=0.133 Sum_probs=114.2
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeE--EEEeecC-CCcEEEEEEeCCC--EEEEEEcC--CeEEEEeCCCCeEEEEeccC
Q 001039 891 SDRGKVVSGSDDQSVLVWDKQTSQL--LEELKGH-DAQVSCVRMLSGE--RVLTASHD--GTVKMWDVRTDTCVATVGRC 963 (1179)
Q Consensus 891 ~d~~~l~sgs~dg~I~iwd~~t~~~--~~~~~~h-~~~V~~l~~s~~~--~l~sgs~d--g~I~iwd~~~~~~~~~~~~~ 963 (1179)
.++..++.+..+|.+....+..... ....-+. .....++.+.++. +++.|+.- +.+.-|....-+.+..+. .
T Consensus 220 ~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N 298 (504)
T PF10433_consen 220 KDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-N 298 (504)
T ss_dssp TTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE---
T ss_pred CCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-C
Confidence 4577899999999998887765331 1122222 4556677777666 89988864 445555544444555553 3
Q ss_pred CCcEEEEEEcCC----CC------EEEEEe---CCCeEEEEeCCCCceeE--Ee--ecC--CCCeEEEEEc---CCEEEE
Q 001039 964 SSAVLCMEYDDS----TG------ILAAGG---RDAVANIWDIRAGRQMH--KF--LGH--TKWIRSIRMD---RDTVIT 1021 (1179)
Q Consensus 964 ~~~v~~l~~sp~----~~------~l~sgs---~dg~I~iwD~~~~~~~~--~~--~~~--~~~I~sl~~~---~~~l~s 1021 (1179)
-++|..+++.+. .. .+++++ .+|.+++.. .|-... .. ..- -..++.+... ..+++.
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~ 376 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVL 376 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCCceEEEE
Confidence 467888887531 11 455544 467888774 332222 11 111 2345555543 346666
Q ss_pred EeCCCcEEEEEcc---CCeeeEEee--cC---CcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEee-cccCc
Q 001039 1022 GSDDWTARMWSIS---RGTCDAVLA--CH---AGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNV-TIHSS 1092 (1179)
Q Consensus 1022 gs~dg~I~iwd~~---~~~~~~~~~--~h---~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~-~~h~~ 1092 (1179)
+..+. -+++.+. ..+.+.... +- ...+.+-.+. +..++=....+ |++.+.... +....+ .....
T Consensus 377 S~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~-i~l~~~~~~---~~~~~w~~~~~~ 449 (504)
T PF10433_consen 377 SFPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKG-IRLIDLEDG---KLTQEWKPPAGS 449 (504)
T ss_dssp EESSE-EEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSE-EEEEESSST---SEEEEEE-TTS-
T ss_pred EcCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCe-EEEEECCCC---eEEEEEeCCCCC
Confidence 66554 4455553 233332221 11 1122222222 44555554444 778876652 333222 22455
Q ss_pred eEEEEecCCCEEEEEECCCcEEEEeCCCC
Q 001039 1093 AILSINAGDHWLGIGAADNSMSLFHRPQE 1121 (1179)
Q Consensus 1093 ~i~sis~dg~~lasgs~Dg~I~iwd~~~~ 1121 (1179)
.|.+.+.++..++.+..++.+..+.+...
T Consensus 450 ~I~~a~~~~~~v~v~~~~~~~~~~~~~~~ 478 (504)
T PF10433_consen 450 IIVAASINDPQVLVALSGGELVYFELDDN 478 (504)
T ss_dssp --SEEEESSSEEEEEE-TTEEEEEEEETT
T ss_pred eEEEEEECCCEEEEEEeCCcEEEEEEECC
Confidence 56666777788888888999999988643
No 478
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=80.04 E-value=1.1e+02 Score=34.58 Aligned_cols=235 Identities=11% Similarity=0.002 Sum_probs=114.5
Q ss_pred EEccCCCceeeccCc-eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEecccCceEEEEeecccceeccccccCCCCE
Q 001039 775 MFSREASSRSHSFSR-VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRGHAGAITALHCVTKREVWDLVGDREDAGF 853 (1179)
Q Consensus 775 ~fSpdg~~las~~~d-I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~~~~~~~~s~d~~~ 853 (1179)
.+.-+|++++.|..+ +.+-+.+... . ...+. .+...|+++... +..+.
T Consensus 8 ~~~~~~~~lL~GTe~Gly~~~~~~~~--~---------------~~~kl--~~~~~v~q~~v~------------~~~~l 56 (302)
T smart00036 8 PITCDGKWLLVGTEEGLYVLNISDQP--G---------------TLEKL--IGRRSVTQIWVL------------EENNV 56 (302)
T ss_pred ccccCCcEEEEEeCCceEEEEcccCC--C---------------CeEEe--cCcCceEEEEEE------------hhhCE
Confidence 455566788888888 8887765321 0 02222 346689999887 45555
Q ss_pred EEEEe-CCCcEEEEcCCCCCc-------------eeEEEeccccccEEE--EecC-CCEEEEEeCCCcEEEEECCCC---
Q 001039 854 FISGS-TDCLVKIWDPSLRGS-------------ELRATLKGHTRTVRA--INSD-RGKVVSGSDDQSVLVWDKQTS--- 913 (1179)
Q Consensus 854 Lasgs-~Dg~I~lWd~~~~~~-------------~~~~~l~~h~~~v~~--~s~d-~~~l~sgs~dg~I~iwd~~t~--- 913 (1179)
|++-+ ....++.+++..-.. +.....-+|...... +... ...++++....+|.++.+...
T Consensus 57 Li~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~ 136 (302)
T smart00036 57 LLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKK 136 (302)
T ss_pred EEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhh
Confidence 55444 444599998741110 001112234443332 2221 123445555667777644322
Q ss_pred -eEEEEe---e-cCCCcEEEEEEe---CCCEEEEEEcCCeEEEEeCCC--CeEEE----E-eccCC-CcEEEEEEcCCCC
Q 001039 914 -QLLEEL---K-GHDAQVSCVRML---SGERVLTASHDGTVKMWDVRT--DTCVA----T-VGRCS-SAVLCMEYDDSTG 977 (1179)
Q Consensus 914 -~~~~~~---~-~h~~~V~~l~~s---~~~~l~sgs~dg~I~iwd~~~--~~~~~----~-~~~~~-~~v~~l~~sp~~~ 977 (1179)
...+.+ . ....++..+..+ ....+..|+..+...++++.. ..... . ..... .++.... -+++.
T Consensus 137 f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~-l~~~e 215 (302)
T smart00036 137 FKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQ-VPRDE 215 (302)
T ss_pred hhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEE-ECCCe
Confidence 111110 0 111233333323 245677777653344455432 11000 0 11111 2333333 34444
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEE-eecCCCCeEEEEEcCCEEEEEeCCCcEEEEEccCCeeeEEeec
Q 001039 978 ILAAGGRDAVANIWDIRAGRQMHK-FLGHTKWIRSIRMDRDTVITGSDDWTARMWSISRGTCDAVLAC 1044 (1179)
Q Consensus 978 ~l~sgs~dg~I~iwD~~~~~~~~~-~~~~~~~I~sl~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 1044 (1179)
+++ +.. ......|....+..+. .-.-.....++++...++++-+.+ .|.++++.+++.++++..
T Consensus 216 ~Ll-c~~-~~~v~Vn~~G~~~~r~~~l~w~~~p~~~~~~~pyll~~~~~-~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 216 FLL-CYD-EFGVFVNLYGKRRSRNPILHWEFMPESFAYHSPYLLAFHDN-GIEIRSIKTGELLQELAD 280 (302)
T ss_pred EEE-EEC-cEEEEEeCCCCccccceEEEcCCcccEEEEECCEEEEEcCC-cEEEEECCCCceEEEEec
Confidence 444 333 3444555542122111 112234556778877777777644 599999999988888763
No 479
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=79.90 E-value=34 Score=42.85 Aligned_cols=107 Identities=8% Similarity=0.061 Sum_probs=64.2
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC-----------C------cceEEE-eecccCceEEEEe--cCCCEEEEEECCCcEEEE
Q 001039 1057 SDRGIITGSSDGLLRFWENDDA-----------G------GIKCVK-NVTIHSSAILSIN--AGDHWLGIGAADNSMSLF 1116 (1179)
Q Consensus 1057 dg~~l~sgs~Dg~I~iwd~~~~-----------~------~~~~~~-~~~~h~~~i~sis--~dg~~lasgs~Dg~I~iw 1116 (1179)
+...|+.+.+||.|.+|.+++- . ..++.. ...+.+.+-++++ ...++||+++....|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 4556777888888888865320 0 001111 1112333344455 667899999988999998
Q ss_pred eCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCC---C---EEEEEeCCCcEEEEEC
Q 001039 1117 HRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLER---K---RICSGGRNGLLRLWEA 1175 (1179)
Q Consensus 1117 d~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg---~---~Lasgs~Dg~I~vWdv 1175 (1179)
-..... .. .....-..|...|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 193 af~l~~-------~r-----~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVD-------ER-----FYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccc-------cc-----cccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 765310 00 0000011256679999997643 2 7888999999999887
No 480
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=79.68 E-value=2e+02 Score=37.34 Aligned_cols=227 Identities=13% Similarity=0.101 Sum_probs=116.5
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCC-----ce--eEEEeccccccEEE-EecCCCEEEEEeCCCcEEEEECCC--------
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRG-----SE--LRATLKGHTRTVRA-INSDRGKVVSGSDDQSVLVWDKQT-------- 912 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~-----~~--~~~~l~~h~~~v~~-~s~d~~~l~sgs~dg~I~iwd~~t-------- 912 (1179)
++...+++-+.+|.|+--+...-. .. ....++........ .+.....++..+.+|.+...+...
T Consensus 494 ~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~ 573 (800)
T TIGR01063 494 ARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKDDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRTA 573 (800)
T ss_pred CcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCCCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCcCC
Confidence 455567777778888776543100 00 01112222222222 245666777777778776665421
Q ss_pred -CeEE---EEeecCCCcEEEEEE---eCCCEEEEEEcCCeEEEEeCCCCe-------EEEEeccCCCcEEEEEEcCCCCE
Q 001039 913 -SQLL---EELKGHDAQVSCVRM---LSGERVLTASHDGTVKMWDVRTDT-------CVATVGRCSSAVLCMEYDDSTGI 978 (1179)
Q Consensus 913 -~~~~---~~~~~h~~~V~~l~~---s~~~~l~sgs~dg~I~iwd~~~~~-------~~~~~~~~~~~v~~l~~sp~~~~ 978 (1179)
|..+ ..+.....-+.++.. .++..++..+.+|.++-.++..-. ....+.. .+.+..+....+...
T Consensus 574 ~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke-~D~lv~v~~~~~~d~ 652 (800)
T TIGR01063 574 KGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD-GDELISVRLTSGDDE 652 (800)
T ss_pred CCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC-CCEEEEEEEeCCCCE
Confidence 2222 122222333444543 356689999999999988764322 1112222 344544444445556
Q ss_pred EEEEeCCCeEEEEeCCC---------CceeEEeecCCCCeEEEE-EcC-CEEEEEeCCCcEEEEEccC-------CeeeE
Q 001039 979 LAAGGRDAVANIWDIRA---------GRQMHKFLGHTKWIRSIR-MDR-DTVITGSDDWTARMWSISR-------GTCDA 1040 (1179)
Q Consensus 979 l~sgs~dg~I~iwD~~~---------~~~~~~~~~~~~~I~sl~-~~~-~~l~sgs~dg~I~iwd~~~-------~~~~~ 1040 (1179)
++..+..|.+..+.... |.....+.. ...|.++. .++ ..++..+..|.++...+.. ++-..
T Consensus 653 lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~kGv~ 731 (800)
T TIGR01063 653 VMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKN-EDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGGKGVK 731 (800)
T ss_pred EEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCC-CCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCCcceE
Confidence 77777788776665432 111112211 22343333 333 3688888889888776532 12222
Q ss_pred Ee--ecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1041 VL--ACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1041 ~~--~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
.+ ....+.+..+....+...++..+.+|.+..++...
T Consensus 732 ~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~e 770 (800)
T TIGR01063 732 SIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQD 770 (800)
T ss_pred EEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhh
Confidence 22 22234444444444445566667777776666554
No 481
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.29 E-value=54 Score=38.12 Aligned_cols=137 Identities=10% Similarity=0.061 Sum_probs=83.7
Q ss_pred EEEEEeCCCEEEEEEcCCeEEEEeCCCC--e-EEEEeccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCce----e
Q 001039 927 SCVRMLSGERVLTASHDGTVKMWDVRTD--T-CVATVGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQ----M 999 (1179)
Q Consensus 927 ~~l~~s~~~~l~sgs~dg~I~iwd~~~~--~-~~~~~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~----~ 999 (1179)
+.+-|.|.+..+.+...|.+.-|-+... . ++..-....++|.++.||+|.+.+|+--.+..|.+++....+. .
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 4455665555555555566666654321 1 2222223567999999999999999999999999998743322 2
Q ss_pred EEeecCCCCeEEEEEcCC-EEEEEeCCCcEEEEEccC-CeeeEEeecCCcCEEEEEEecCCCEEEEE
Q 001039 1000 HKFLGHTKWIRSIRMDRD-TVITGSDDWTARMWSISR-GTCDAVLACHAGPVQCVEYSSSDRGIITG 1064 (1179)
Q Consensus 1000 ~~~~~~~~~I~sl~~~~~-~l~sgs~dg~I~iwd~~~-~~~~~~~~~h~~~V~~l~~spdg~~l~sg 1064 (1179)
.+.+.....|..+.|..+ -++..+.. -+-+|.... ...++..+.|...|+-..|.++.+.+.-+
T Consensus 106 ~~ck~k~~~IlGF~W~~s~e~A~i~~~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSSTEIAFITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred HHhccCcceeEEEEEecCeeEEEEecC-CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 223344556888889554 44444433 355665433 23344455677777777777776654433
No 482
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=78.80 E-value=0.25 Score=56.78 Aligned_cols=141 Identities=18% Similarity=0.228 Sum_probs=96.9
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCE-EEEEEcCCeEEEEeCCCCeEEEEeccCCC
Q 001039 888 AINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGER-VLTASHDGTVKMWDVRTDTCVATVGRCSS 965 (1179)
Q Consensus 888 ~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~-l~sgs~dg~I~iwd~~~~~~~~~~~~~~~ 965 (1179)
.+.+.+..++.++.+..+..||-. ++...... ..+....++|. +++. ++.+-..+.+.+||+.+....+.-.+...
T Consensus 41 ~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~ 118 (615)
T KOG2247|consen 41 RWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTS 118 (615)
T ss_pred eEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcc
Confidence 346777778888888889999844 55444433 23445566776 4444 45666789999999976543222112222
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcC-CEEEEEeCCCcEEE
Q 001039 966 AVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDR-DTVITGSDDWTARM 1030 (1179)
Q Consensus 966 ~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~-~~l~sgs~dg~I~i 1030 (1179)
.-.-+.|++.+..++.|...|.+.+++..+.+.+...-.|..+++++++.. ++.+.++.|..+.+
T Consensus 119 s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v 184 (615)
T KOG2247|consen 119 SKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSV 184 (615)
T ss_pred hHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHH
Confidence 223378999999999999999999999988877766655999999999964 46776666654443
No 483
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=78.11 E-value=10 Score=40.79 Aligned_cols=79 Identities=8% Similarity=0.046 Sum_probs=52.8
Q ss_pred ceEEEEecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeee----cCCCcccEEEEEEcCCCCEEEEEeCC
Q 001039 1092 SAILSINAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRT----PQKTVAVVRCIASDLERKRICSGGRN 1167 (1179)
Q Consensus 1092 ~~i~sis~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~----~~~h~~~V~~v~fspdg~~Lasgs~D 1167 (1179)
..+..+..+++++.+-+.+|.+++||+.+.+..--. ..+. .++.. -......|..+..+.+|.-|++-+ +
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~---~Si~--pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-n 86 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPP---VSIA--PLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-N 86 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCC---ccHH--HHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-C
Confidence 345557788999999999999999999865431000 0000 00100 004567789999999998888766 5
Q ss_pred CcEEEEECC
Q 001039 1168 GLLRLWEAT 1176 (1179)
Q Consensus 1168 g~I~vWdv~ 1176 (1179)
|..+.|+.+
T Consensus 87 g~~y~y~~~ 95 (219)
T PF07569_consen 87 GDSYSYSPD 95 (219)
T ss_pred CCEEEeccc
Confidence 788888865
No 484
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=76.92 E-value=1.5e+02 Score=34.16 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=36.5
Q ss_pred EEEEEeCCCcEEEEEccCCeeeEE----eecCCcCEEEEEEecCCCEEEEEeCCCcEE
Q 001039 1018 TVITGSDDWTARMWSISRGTCDAV----LACHAGPVQCVEYSSSDRGIITGSSDGLLR 1071 (1179)
Q Consensus 1018 ~l~sgs~dg~I~iwd~~~~~~~~~----~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~ 1071 (1179)
++++.-..+.|...+++.+..+.. +......+..+++.|||.+.++-+.+|.|.
T Consensus 273 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 273 LFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred EEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 566655667888888875533222 223445799999999999998888888864
No 485
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=75.71 E-value=1.3e+02 Score=32.98 Aligned_cols=143 Identities=10% Similarity=0.000 Sum_probs=87.0
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEEEcCC--EEEEEeCCCcEEEEEccCCeeeE-E
Q 001039 965 SAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIRMDRD--TVITGSDDWTARMWSISRGTCDA-V 1041 (1179)
Q Consensus 965 ~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~~~~~--~l~sgs~dg~I~iwd~~~~~~~~-~ 1041 (1179)
+.-..++-.+||..-+++...|.|--.|.++|+....-.+....-..+...++ .-++-+.. -|.-.|-++.+... .
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~ 140 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP 140 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Confidence 34567788899988888888889999999999877665555555555555433 33332222 34444544433211 1
Q ss_pred --eecCCcCEEEEEEecCCCEEEEEeC---------CCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECC
Q 001039 1042 --LACHAGPVQCVEYSSSDRGIITGSS---------DGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAAD 1110 (1179)
Q Consensus 1042 --~~~h~~~V~~l~~spdg~~l~sgs~---------Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~D 1110 (1179)
.+.-........|++.|+.-+++.. .+.|++|+... +....-++..|+|..-++.-.+
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq-----------G~gpyGi~atpdGsvwyaslag 209 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ-----------GGGPYGICATPDGSVWYASLAG 209 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC-----------CCCCcceEECCCCcEEEEeccc
Confidence 1223456788899999998888752 23344444332 3333335667788777766666
Q ss_pred CcEEEEeCC
Q 001039 1111 NSMSLFHRP 1119 (1179)
Q Consensus 1111 g~I~iwd~~ 1119 (1179)
+.|-..|..
T Consensus 210 naiaridp~ 218 (353)
T COG4257 210 NAIARIDPF 218 (353)
T ss_pred cceEEcccc
Confidence 666666654
No 486
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=75.68 E-value=1.6e+02 Score=33.91 Aligned_cols=223 Identities=9% Similarity=0.066 Sum_probs=105.4
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCeE---EEEe----ecCCCcEEEEEEeC----CCEEEEEEcC---------CeE
Q 001039 887 RAINSDRGKVVSGSDDQSVLVWDKQTSQL---LEEL----KGHDAQVSCVRMLS----GERVLTASHD---------GTV 946 (1179)
Q Consensus 887 ~~~s~d~~~l~sgs~dg~I~iwd~~t~~~---~~~~----~~h~~~V~~l~~s~----~~~l~sgs~d---------g~I 946 (1179)
.++.|||+.+++ ...|.|++++ ..+.. +..+ .........+++++ +.++.+.... ..|
T Consensus 7 ~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v 84 (331)
T PF07995_consen 7 MAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRV 84 (331)
T ss_dssp EEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEE
T ss_pred EEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcceee
Confidence 467899866654 5699999999 44443 2232 12345678889885 2454444331 234
Q ss_pred EEEeCCCC-------eEE-EEecc---CCCcEEEEEEcCCCCEEEEEeCCCe-------------EEEEeCCCCce----
Q 001039 947 KMWDVRTD-------TCV-ATVGR---CSSAVLCMEYDDSTGILAAGGRDAV-------------ANIWDIRAGRQ---- 998 (1179)
Q Consensus 947 ~iwd~~~~-------~~~-~~~~~---~~~~v~~l~~sp~~~~l~sgs~dg~-------------I~iwD~~~~~~---- 998 (1179)
.-|....+ +.+ ..+.. ....-..++|.|+|.+.++.+..+. |.-.|.. ++.
T Consensus 85 ~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~p~dn 163 (331)
T PF07995_consen 85 VRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSIPADN 163 (331)
T ss_dssp EEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB-TTS
T ss_pred EEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcCCCCC
Confidence 44444333 111 11111 2334567999999977776654332 2222321 110
Q ss_pred ---------eEEe-ecCCCCeEEEEEcCC--EEEEEe--CCCcEEEEEccCC----------------------------
Q 001039 999 ---------MHKF-LGHTKWIRSIRMDRD--TVITGS--DDWTARMWSISRG---------------------------- 1036 (1179)
Q Consensus 999 ---------~~~~-~~~~~~I~sl~~~~~--~l~sgs--~dg~I~iwd~~~~---------------------------- 1036 (1179)
...+ .++. ....++|++. .|.++. .|+.=.|--+..|
T Consensus 164 P~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~ 242 (331)
T PF07995_consen 164 PFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGF 242 (331)
T ss_dssp TTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS
T ss_pred ccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCc
Confidence 0000 0111 2345677654 444432 2222122111111
Q ss_pred -eeeEEeecCCcCEEEEEEec-------CCCEEEEEeCCCcEEEEEcCCCCcceEEEeec-ccCceEEEE--ecCCCEEE
Q 001039 1037 -TCDAVLACHAGPVQCVEYSS-------SDRGIITGSSDGLLRFWENDDAGGIKCVKNVT-IHSSAILSI--NAGDHWLG 1105 (1179)
Q Consensus 1037 -~~~~~~~~h~~~V~~l~~sp-------dg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~h~~~i~si--s~dg~~la 1105 (1179)
.+...+. +...+..+.|.. .|.++++.-..+.|....++..+.......+. .....+..+ .|||.+.+
T Consensus 243 ~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv 321 (331)
T PF07995_consen 243 VPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYV 321 (331)
T ss_dssp ---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEE
T ss_pred Cccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEE
Confidence 1222233 335567777764 35566666666778877776543222222322 233355444 68888888
Q ss_pred EEECCCcEE
Q 001039 1106 IGAADNSMS 1114 (1179)
Q Consensus 1106 sgs~Dg~I~ 1114 (1179)
+-+.+|.|+
T Consensus 322 ~~d~~G~iy 330 (331)
T PF07995_consen 322 SDDSDGKIY 330 (331)
T ss_dssp EE-TTTTEE
T ss_pred EECCCCeEe
Confidence 877777764
No 487
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=75.08 E-value=11 Score=28.76 Aligned_cols=32 Identities=25% Similarity=0.412 Sum_probs=26.3
Q ss_pred CcEEEEEEcCCC---CEEEEEeCCCeEEEEeCCCC
Q 001039 965 SAVLCMEYDDST---GILAAGGRDAVANIWDIRAG 996 (1179)
Q Consensus 965 ~~v~~l~~sp~~---~~l~sgs~dg~I~iwD~~~~ 996 (1179)
+.+.++.|+|+. .+|+.+-..|.+.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468899999854 48888888899999999953
No 488
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=75.04 E-value=17 Score=37.40 Aligned_cols=35 Identities=3% Similarity=0.092 Sum_probs=26.1
Q ss_pred CceEEEEeecccceeccccccCC-CCEEEEEeCCCcEEEEcCC
Q 001039 828 GAITALHCVTKREVWDLVGDRED-AGFFISGSTDCLVKIWDPS 869 (1179)
Q Consensus 828 ~~V~~v~~s~~~~~~~~~~~s~d-~~~Lasgs~Dg~I~lWd~~ 869 (1179)
..|.+++|||.. ..++ +-+||+...+|.|.||...
T Consensus 86 ~~vv~~aWSP~G-------l~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSG-------LGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCC-------CCCCCceEEEEEcCCCeEEEEecC
Confidence 378899998742 3344 4567888899999999855
No 489
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.97 E-value=86 Score=41.63 Aligned_cols=225 Identities=13% Similarity=0.125 Sum_probs=105.4
Q ss_pred ccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCC-cEEEEEEe-CCCEEEEEEcCCeEEEEeCCCCeEEEE
Q 001039 882 HTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDA-QVSCVRML-SGERVLTASHDGTVKMWDVRTDTCVAT 959 (1179)
Q Consensus 882 h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~-~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~~~~~~~ 959 (1179)
|.....++++..+.++.|+.+|.|+++-...-+.......... .+..+.+. ......+...+..+.+|.......+.
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~- 114 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF- 114 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee-
Confidence 4556678899999999999999999997654333322221111 11212221 12233344455566666543322221
Q ss_pred eccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE----eecCCCCe-EEEEEc-CCEEEEEeCCCcEEEEEc
Q 001039 960 VGRCSSAVLCMEYDDSTGILAAGGRDAVANIWDIRAGRQMHK----FLGHTKWI-RSIRMD-RDTVITGSDDWTARMWSI 1033 (1179)
Q Consensus 960 ~~~~~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~----~~~~~~~I-~sl~~~-~~~l~sgs~dg~I~iwd~ 1033 (1179)
....+++....+--.+ +.| .++.+++||..-.....- +..+...+ ...... .-.......+ -..|.+
T Consensus 115 ---~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~~~~~ 187 (993)
T KOG1983|consen 115 ---LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLD--TVLISL 187 (993)
T ss_pred ---cCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccc--cceeec
Confidence 2233444444343334 455 788888888642211100 01111000 000000 0000000001 111111
Q ss_pred cCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCCCEEEEEECCCcE
Q 001039 1034 SRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGDHWLGIGAADNSM 1113 (1179)
Q Consensus 1034 ~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg~~lasgs~Dg~I 1113 (1179)
.... ..+..+...+.+..+...++.. .+...+.+-+|+........... ..++.. +.++..++++..||.+
T Consensus 188 ~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~v~~h~Dgs~ 258 (993)
T KOG1983|consen 188 PDAY--LGLSLIEYESLQVLYYSPTKIL-IGFNRGLVVIKDRASKYVQSAYL-PNGQLE-----SRDGSHFVSYHTDGSY 258 (993)
T ss_pred cccc--ccccccccccceeeeecCCCcc-eeeeeeeeeehhcccccchhhcc-cccccC-----ccCCceEEEEEecCCE
Confidence 1111 2223345555665555444433 34455666677655421111111 011111 7889999999999999
Q ss_pred EEEeCCCCCc
Q 001039 1114 SLFHRPQERL 1123 (1179)
Q Consensus 1114 ~iwd~~~~~~ 1123 (1179)
..||...+.+
T Consensus 259 ~fWd~s~g~~ 268 (993)
T KOG1983|consen 259 AFWDVSSGKL 268 (993)
T ss_pred EeeecCCCce
Confidence 9999986533
No 490
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=74.38 E-value=83 Score=34.27 Aligned_cols=141 Identities=9% Similarity=0.074 Sum_probs=71.2
Q ss_pred EEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeC-C--CcEEEEEcCC-CC--cceEEE-eecccC-ceEEEEec
Q 001039 1028 ARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSS-D--GLLRFWENDD-AG--GIKCVK-NVTIHS-SAILSINA 1099 (1179)
Q Consensus 1028 I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~-D--g~I~iwd~~~-~~--~~~~~~-~~~~h~-~~i~sis~ 1099 (1179)
-.+||+.+++....-...+....+-++-+||+++.+|+. + ..+++++... .. ...... .+.... -+-...-+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 357898887654433333444455567899999999874 3 3477887544 11 111110 011110 11122247
Q ss_pred CCCEEEEEECCCc-EEEEeCCCCCcCcccCCCCccccceeeeecC--CCcccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001039 1100 GDHWLGIGAADNS-MSLFHRPQERLGGFSGTGSKMSGWQLYRTPQ--KTVAVVRCIASDLERKRICSGGRNGLLRLWEAT 1176 (1179)
Q Consensus 1100 dg~~lasgs~Dg~-I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~--~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv~ 1176 (1179)
||+.|+.|+.+.- ...|.-... +.....+..+.... ....----+...|||++++.+..++ .|||.+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~--------~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~ 197 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGP--------GPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYK 197 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccC--------CCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCC
Confidence 9999999887732 333332110 11111111111110 1111122455679999999988765 455666
Q ss_pred CC
Q 001039 1177 IN 1178 (1179)
Q Consensus 1177 tg 1178 (1179)
++
T Consensus 198 ~n 199 (243)
T PF07250_consen 198 TN 199 (243)
T ss_pred CC
Confidence 54
No 491
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=74.06 E-value=80 Score=36.89 Aligned_cols=101 Identities=8% Similarity=0.102 Sum_probs=56.1
Q ss_pred CcEEEEEEcCCCCEEEEEe-----------CCC-eEEEEeCCC--Cc--eeEEeecCCCCeEEEEEcCCEEEEEeCCCcE
Q 001039 965 SAVLCMEYDDSTGILAAGG-----------RDA-VANIWDIRA--GR--QMHKFLGHTKWIRSIRMDRDTVITGSDDWTA 1028 (1179)
Q Consensus 965 ~~v~~l~~sp~~~~l~sgs-----------~dg-~I~iwD~~~--~~--~~~~~~~~~~~I~sl~~~~~~l~sgs~dg~I 1028 (1179)
.....|+|+++|+++++-. ..+ .|.+++-.+ |+ ....+.........+++.++-+++++.....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV~~~~~i~ 93 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYVATPPDIL 93 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEEeCCCeEE
Confidence 4557889999998776642 223 677776543 32 2234433444567787754435555555433
Q ss_pred EEEEccCC-----eeeEE---eec----CCcCEEEEEEecCCCEEEEEe
Q 001039 1029 RMWSISRG-----TCDAV---LAC----HAGPVQCVEYSSSDRGIITGS 1065 (1179)
Q Consensus 1029 ~iwd~~~~-----~~~~~---~~~----h~~~V~~l~~spdg~~l~sgs 1065 (1179)
++.|.... +.... +.. +......++|.|||.+.++-+
T Consensus 94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 44454321 21111 222 134477899999998766554
No 492
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=73.90 E-value=1.6e+02 Score=33.12 Aligned_cols=168 Identities=10% Similarity=0.112 Sum_probs=95.2
Q ss_pred eEEEEeCCCCceeEEeec------CCCCeEEEEEcC-------CE-EEEEeCCCcEEEEEccCCeeeEEeecC-------
Q 001039 987 VANIWDIRAGRQMHKFLG------HTKWIRSIRMDR-------DT-VITGSDDWTARMWSISRGTCDAVLACH------- 1045 (1179)
Q Consensus 987 ~I~iwD~~~~~~~~~~~~------~~~~I~sl~~~~-------~~-l~sgs~dg~I~iwd~~~~~~~~~~~~h------- 1045 (1179)
.|.+||+++++.++++.- ..+.+..+.++. .+ .++=+..+.|.++|+.+++..+....+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 788999999998887643 244677888754 23 333344568999999998766554321
Q ss_pred ------------CcCEEEEEEec---CCCEEEEEeCCCcEEEEEcCC-----CC---c---ceEEEee--cccCceEEEE
Q 001039 1046 ------------AGPVQCVEYSS---SDRGIITGSSDGLLRFWENDD-----AG---G---IKCVKNV--TIHSSAILSI 1097 (1179)
Q Consensus 1046 ------------~~~V~~l~~sp---dg~~l~sgs~Dg~I~iwd~~~-----~~---~---~~~~~~~--~~h~~~i~si 1097 (1179)
...+..++.+| +|++|.-+...+ -++|.+.+ .. . ...+..+ ++......++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 12356666655 666666655443 22333322 10 0 0111111 1223445677
Q ss_pred ecCCCEEEEEECCCcEEEEeCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcC--CCCEEEEE
Q 001039 1098 NAGDHWLGIGAADNSMSLFHRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDL--ERKRICSG 1164 (1179)
Q Consensus 1098 s~dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fsp--dg~~Lasg 1164 (1179)
+++|.+..+--..+.|..|+..+.- .....+.+..-...-..+.++.+.+ +|.+-+.+
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~---------~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPY---------TPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB----------GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCc---------CccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 8899999998899999999986310 0011233333333345788999999 87766655
No 493
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=72.72 E-value=3e+02 Score=35.84 Aligned_cols=132 Identities=14% Similarity=0.187 Sum_probs=70.9
Q ss_pred CCcEEEEEcc-CCeeeEEeec--CCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCCCcceEEEeecccCceEEEEecCC
Q 001039 1025 DWTARMWSIS-RGTCDAVLAC--HAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDAGGIKCVKNVTIHSSAILSINAGD 1101 (1179)
Q Consensus 1025 dg~I~iwd~~-~~~~~~~~~~--h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~h~~~i~sis~dg 1101 (1179)
+|.++.|++- .|+.+.-+.. -.+.+. +..|-..++.+| ....+++||+...+..+ ....+.-...|..+...+
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~--Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLR-k~e~k~~p~~Is~iqt~~ 986 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVG--AICPFQGRVLAG-VGRFLRLYDLGKKKLLR-KCELKFIPNRISSIQTYG 986 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccce--EEeccCCEEEEe-cccEEEEeeCChHHHHh-hhhhccCceEEEEEeecc
Confidence 4446666653 3443222221 123333 455666666665 55679999998733221 122223456677788889
Q ss_pred CEEEEEECCCcEEEE--eCCCCCcCcccCCCCccccceeeeecCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001039 1102 HWLGIGAADNSMSLF--HRPQERLGGFSGTGSKMSGWQLYRTPQKTVAVVRCIASDLERKRICSGGRNGLLRLWEA 1175 (1179)
Q Consensus 1102 ~~lasgs~Dg~I~iw--d~~~~~~~~~~~~g~~~~~~~~~~~~~~h~~~V~~v~fspdg~~Lasgs~Dg~I~vWdv 1175 (1179)
..+++|+.--.+..+ +....++..+..+ .-.-.|+++.+- |...+|.|+.=|.+.+-.+
T Consensus 987 ~RI~VgD~qeSV~~~~y~~~~n~l~~fadD--------------~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 987 ARIVVGDIQESVHFVRYRREDNQLIVFADD--------------PVPRHVTALELL-DYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred eEEEEeeccceEEEEEEecCCCeEEEEeCC--------------CccceeeEEEEe-cCCceeeccccCcEEEEEC
Confidence 999999876666554 4333322222211 111235555543 4455777777777766554
No 494
>PRK05560 DNA gyrase subunit A; Validated
Probab=72.15 E-value=3.1e+02 Score=35.74 Aligned_cols=227 Identities=11% Similarity=0.060 Sum_probs=116.1
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCC-------ceeEEEeccccccEEE-EecCCCEEEEEeCCCcEEEEECC---------
Q 001039 849 EDAGFFISGSTDCLVKIWDPSLRG-------SELRATLKGHTRTVRA-INSDRGKVVSGSDDQSVLVWDKQ--------- 911 (1179)
Q Consensus 849 ~d~~~Lasgs~Dg~I~lWd~~~~~-------~~~~~~l~~h~~~v~~-~s~d~~~l~sgs~dg~I~iwd~~--------- 911 (1179)
++...++.-+.+|.|+--+...-. ......++........ .+.....++..+..|.+....+.
T Consensus 496 ~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~ 575 (805)
T PRK05560 496 PEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTA 575 (805)
T ss_pred CCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCC
Confidence 456667777778877766543100 0001112222222222 24556667777777877665432
Q ss_pred CCeEE---EEeecCCCcEEEEEEe---CCCEEEEEEcCCeEEEEeCCC-------CeEEEEeccCCCcEEEEEEcCCCCE
Q 001039 912 TSQLL---EELKGHDAQVSCVRML---SGERVLTASHDGTVKMWDVRT-------DTCVATVGRCSSAVLCMEYDDSTGI 978 (1179)
Q Consensus 912 t~~~~---~~~~~h~~~V~~l~~s---~~~~l~sgs~dg~I~iwd~~~-------~~~~~~~~~~~~~v~~l~~sp~~~~ 978 (1179)
.|..+ ..+.....-+.++.+. +...++..+.+|.++--+... |.....+.. .+.+..+........
T Consensus 576 ~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke-~D~lv~v~~~~~~d~ 654 (805)
T PRK05560 576 RGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDE-GDELIGVRLTDGDDD 654 (805)
T ss_pred CCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCC-CCEEEEEEEeCCCCE
Confidence 13332 1223233344555554 467899999999998776543 222223332 344444444445556
Q ss_pred EEEEeCCCeEEEEeCCC---------CceeEEeecCCCCeEE-EEEcCC--EEEEEeCCCcEEEEEccC-------Ceee
Q 001039 979 LAAGGRDAVANIWDIRA---------GRQMHKFLGHTKWIRS-IRMDRD--TVITGSDDWTARMWSISR-------GTCD 1039 (1179)
Q Consensus 979 l~sgs~dg~I~iwD~~~---------~~~~~~~~~~~~~I~s-l~~~~~--~l~sgs~dg~I~iwd~~~-------~~~~ 1039 (1179)
++..+..|.+..+.... |.....+.. ...|.+ +.++++ .++..+..|.++...+.. +.-.
T Consensus 655 lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG~ 733 (805)
T PRK05560 655 ILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKGV 733 (805)
T ss_pred EEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCcE
Confidence 77777888777766532 112222322 223333 333332 678888888888776432 1112
Q ss_pred EEe--ecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1040 AVL--ACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1040 ~~~--~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
..+ ....+.+..+....+...++..+.+|.+..++...
T Consensus 734 ~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~e 773 (805)
T PRK05560 734 ITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSE 773 (805)
T ss_pred EeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHH
Confidence 222 22223444433333344566666777776666544
No 495
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=71.98 E-value=70 Score=38.18 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=25.3
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 001039 964 SSAVLCMEYDDSTGILAAGGRDAVANIWDIRA 995 (1179)
Q Consensus 964 ~~~v~~l~~sp~~~~l~sgs~dg~I~iwD~~~ 995 (1179)
...|..++..+..+.+++.+.+|.|.+||+..
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 34489999999889999999999999999975
No 496
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.96 E-value=33 Score=45.00 Aligned_cols=135 Identities=19% Similarity=0.317 Sum_probs=83.9
Q ss_pred eCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe---CC------CEEEEEEcCCeEEEEeCC----CCeE-----EEEec
Q 001039 900 SDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML---SG------ERVLTASHDGTVKMWDVR----TDTC-----VATVG 961 (1179)
Q Consensus 900 s~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s---~~------~~l~sgs~dg~I~iwd~~----~~~~-----~~~~~ 961 (1179)
+.|+.+.+|+.+++.....+.+-...|..+..- +| ++++..+.--.|.++-+. ++.. ..++.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 347789999999988888888877777777654 22 233333333445554332 1111 02223
Q ss_pred cCCCcEEEEEEcCCCCEEEEEeCCCeEEE--EeCCCC---c-e----------------eEEee-cCCCCeEEEEEcCC-
Q 001039 962 RCSSAVLCMEYDDSTGILAAGGRDAVANI--WDIRAG---R-Q----------------MHKFL-GHTKWIRSIRMDRD- 1017 (1179)
Q Consensus 962 ~~~~~v~~l~~sp~~~~l~sgs~dg~I~i--wD~~~~---~-~----------------~~~~~-~~~~~I~sl~~~~~- 1017 (1179)
..+..|.|+....+|+.+++| .||.++= |....| + + +-.+. .+..+|..++++..
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 345678999988888877665 5564332 222211 1 1 11122 45678999999654
Q ss_pred -EEEEEeCCCcEEEEEccC
Q 001039 1018 -TVITGSDDWTARMWSISR 1035 (1179)
Q Consensus 1018 -~l~sgs~dg~I~iwd~~~ 1035 (1179)
.+.+-++.|+|.+||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 788899999999999976
No 497
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.34 E-value=46 Score=44.06 Aligned_cols=69 Identities=9% Similarity=0.060 Sum_probs=42.4
Q ss_pred CCCCeEEEEE-cCCEEEEEeCCCcEEEEEccCCeeeEEeecCCcCEEEEEEecCCCEEEEEeCCCcEEEEEcCCC
Q 001039 1005 HTKWIRSIRM-DRDTVITGSDDWTARMWSISRGTCDAVLACHAGPVQCVEYSSSDRGIITGSSDGLLRFWENDDA 1078 (1179)
Q Consensus 1005 ~~~~I~sl~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~spdg~~l~sgs~Dg~I~iwd~~~~ 1078 (1179)
+...+.+..+ .++-.+.+..-+.+..|+.........+.. ....++.++..++++..||.+.+||...+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g 266 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLP-----NGQLESRDGSHFVSYHTDGSYAFWDVSSG 266 (993)
T ss_pred cccccceeeeecCCCcceeeeeeeeeehhcccccchhhccc-----ccccCccCCceEEEEEecCCEEeeecCCC
Confidence 3334444444 444555666667777777544433333321 11112788999999999999999998874
No 498
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=70.77 E-value=66 Score=35.92 Aligned_cols=111 Identities=9% Similarity=0.109 Sum_probs=68.2
Q ss_pred CCeEEEEeCCCCeEEEEeccCCCcEEEEEEcCCCCEEEEEe------CCCeEEEEeCCCCceeEEeec-----CCCCeEE
Q 001039 943 DGTVKMWDVRTDTCVATVGRCSSAVLCMEYDDSTGILAAGG------RDAVANIWDIRAGRQMHKFLG-----HTKWIRS 1011 (1179)
Q Consensus 943 dg~I~iwd~~~~~~~~~~~~~~~~v~~l~~sp~~~~l~sgs------~dg~I~iwD~~~~~~~~~~~~-----~~~~I~s 1011 (1179)
...|++||..+.+....-.+-.+.|..+.|..+.+.++.|. ....+..||..+... ..+.+ -.+++..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEE
Confidence 45699999988877666556778999999997777777764 355788999877643 22322 2367888
Q ss_pred EEE---cCC-EEEEEe-CCC--cEEEEEccCCeeeEE-eecCCcCEEEEEE
Q 001039 1012 IRM---DRD-TVITGS-DDW--TARMWSISRGTCDAV-LACHAGPVQCVEY 1054 (1179)
Q Consensus 1012 l~~---~~~-~l~sgs-~dg--~I~iwd~~~~~~~~~-~~~h~~~V~~l~~ 1054 (1179)
+.+ +.+ ..++|. .+| .|..||-.+...+.. .......|..+.+
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 877 443 343443 333 466676544433333 2222344555544
No 499
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=70.05 E-value=3.5 Score=47.78 Aligned_cols=230 Identities=10% Similarity=0.127 Sum_probs=133.7
Q ss_pred EEEEEccCCCceeeccCc--eEeeeCCCCCCCCCCCCCCCCCCCcccccceEEEec-ccCceEEEEeecccceecccccc
Q 001039 772 VQSMFSREASSRSHSFSR--VRKWTSDAANENGTPRKQDSTAGGKKIQSNIRIIRG-HAGAITALHCVTKREVWDLVGDR 848 (1179)
Q Consensus 772 ~~~~fSpdg~~las~~~d--I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g-H~~~V~~v~~s~~~~~~~~~~~s 848 (1179)
....|-|.|..++.++.+ +..+|-.... .+.+ -.+....++|-
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq~----------------------~le~n~tg~aldm~wD------------ 83 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQV----------------------ILELNPTGKALDMAWD------------ 83 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcce----------------------ecccCCchhHhhhhhc------------
Confidence 344778877777777666 6677744211 1111 12333344442
Q ss_pred CCCCEE-EEEeCCCcEEEEcCCCCCceeEEEeccccccEEEEecCCCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEE
Q 001039 849 EDAGFF-ISGSTDCLVKIWDPSLRGSELRATLKGHTRTVRAINSDRGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVS 927 (1179)
Q Consensus 849 ~d~~~L-asgs~Dg~I~lWd~~~~~~~~~~~l~~h~~~v~~~s~d~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~ 927 (1179)
.++..+ +.+-..+.+.+||++......+..-..|......+++....++.+...|.+.|++..+.+.+.....|...++
T Consensus 84 kegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgt 163 (615)
T KOG2247|consen 84 KEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGT 163 (615)
T ss_pred cccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhccccccee
Confidence 345444 4556688999999873322222222234455556788888999999999999999888777666656899999
Q ss_pred EEEEeCCCEEEEEEcCCeEEEEeCCCCeEEEEe--ccCCCcE--EEEE---EcCCCCEEEEEeCCCeEEEE--eC--CCC
Q 001039 928 CVRMLSGERVLTASHDGTVKMWDVRTDTCVATV--GRCSSAV--LCME---YDDSTGILAAGGRDAVANIW--DI--RAG 996 (1179)
Q Consensus 928 ~l~~s~~~~l~sgs~dg~I~iwd~~~~~~~~~~--~~~~~~v--~~l~---~sp~~~~l~sgs~dg~I~iw--D~--~~~ 996 (1179)
++++...++.+.++.|..+.+-...+.. .... .+..+.. .+++ |...|..+.+.-. |.+.+. .. ..+
T Consensus 164 q~av~lEd~vil~dcd~~L~v~~qeget-a~ltevggepdnm~~~y~k~n~w~kage~m~sVvs-gKkhl~yak~nE~D~ 241 (615)
T KOG2247|consen 164 QIAVTLEDYVILCDCDNTLSVTTQEGET-ASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVS-GKKHLMYAKYNELDE 241 (615)
T ss_pred EEEecccceeeecCcHHHHHHhhhccce-eeeeeccCccchhhhheeeeeccccccceeeeeee-cHHHHHHHhhcCCCC
Confidence 9999988889998888776665433322 2211 1111111 1121 2233333333211 111111 11 112
Q ss_pred ceeEEeecCCCCeEEEEEcCC-EEEEEeCCCcEEEEEccCCe
Q 001039 997 RQMHKFLGHTKWIRSIRMDRD-TVITGSDDWTARMWSISRGT 1037 (1179)
Q Consensus 997 ~~~~~~~~~~~~I~sl~~~~~-~l~sgs~dg~I~iwd~~~~~ 1037 (1179)
..--.++...+.+.|..|-.+ .+.-|..-|.|..-...+++
T Consensus 242 pval~fq~~~gni~cyrwylDg~i~igf~ag~iV~iS~h~ae 283 (615)
T KOG2247|consen 242 PVALQFQEKYGNIHCYRWYLDGYILIGFDAGYIVSISAHNAE 283 (615)
T ss_pred ccceEeeecCCceeEEEEeccccccccccceeEEEEeccchH
Confidence 222256666778888888655 77777777777777766654
No 500
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=69.67 E-value=2.4e+02 Score=33.46 Aligned_cols=178 Identities=12% Similarity=0.036 Sum_probs=94.6
Q ss_pred CCEEEEEeCCCcEEEEECCCCeEEEEeecCCCcEEEEEEe-CCCEEEEEEcCCeEEEEeCCC------------------
Q 001039 893 RGKVVSGSDDQSVLVWDKQTSQLLEELKGHDAQVSCVRML-SGERVLTASHDGTVKMWDVRT------------------ 953 (1179)
Q Consensus 893 ~~~l~sgs~dg~I~iwd~~t~~~~~~~~~h~~~V~~l~~s-~~~~l~sgs~dg~I~iwd~~~------------------ 953 (1179)
...+.+-+.||++.+++-+.......+.+ ---...+.|. ..+.+++++.+..+..|....
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~ 223 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDI 223 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccc
Confidence 46788889999999999775544444433 2222334555 466788888888888886421
Q ss_pred --CeE---EEEeccCCCcEEE---EEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEeecCCCCeEEEE-E------cCC-
Q 001039 954 --DTC---VATVGRCSSAVLC---MEYDDSTGILAAGGRDAVANIWDIRAGRQMHKFLGHTKWIRSIR-M------DRD- 1017 (1179)
Q Consensus 954 --~~~---~~~~~~~~~~v~~---l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~I~sl~-~------~~~- 1017 (1179)
++. .+++ .-...+.. +.++.....+++-+. .++.+.+- +|......+- .....++. + .++
T Consensus 224 ~~~k~l~~dWs~-nlGE~~l~i~v~~~~~~~~~IvvLge-r~Lf~l~~-~G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~ 299 (418)
T PF14727_consen 224 SSGKKLNPDWSF-NLGEQALDIQVVRFSSSESDIVVLGE-RSLFCLKD-NGSLRFQKRL-DYNPSCFCPYRVPWYNEPST 299 (418)
T ss_pred cccccccceeEE-ECCceeEEEEEEEcCCCCceEEEEec-ceEEEEcC-CCeEEEEEec-CCceeeEEEEEeecccCCCC
Confidence 000 1111 11222333 333333333444433 45666654 3433322222 22222222 1 222
Q ss_pred --EEEEEeCCCcEEEEEccCCeeeEEeecCCcCE--EEEEEecCCCEEEEEeCCCcEEEEEcCC
Q 001039 1018 --TVITGSDDWTARMWSISRGTCDAVLACHAGPV--QCVEYSSSDRGIITGSSDGLLRFWENDD 1077 (1179)
Q Consensus 1018 --~l~sgs~dg~I~iwd~~~~~~~~~~~~h~~~V--~~l~~spdg~~l~sgs~Dg~I~iwd~~~ 1077 (1179)
.++.++.++++.||. ..+.+...+....+| .-..+..-...|++-+.+|.+.+-=+.+
T Consensus 300 ~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 300 RLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred ceEEEEEecCCeEEEEe--CCeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 488899999999986 334444433323333 2222333355677778888888876666
Done!